Query 043594
Match_columns 86
No_of_seqs 120 out of 1599
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 99.9 2.2E-23 4.9E-28 145.3 6.0 86 1-86 330-415 (697)
2 PLN03077 Protein ECB2; Provisi 99.9 1.3E-21 2.8E-26 138.8 7.2 86 1-86 293-378 (857)
3 PLN03081 pentatricopeptide (PP 99.8 2.7E-21 5.9E-26 134.9 7.5 86 1-86 128-213 (697)
4 PLN03077 Protein ECB2; Provisi 99.8 6E-21 1.3E-25 135.4 7.3 86 1-86 394-479 (857)
5 PLN03218 maturation of RBCL 1; 99.8 1.7E-20 3.7E-25 135.4 6.6 84 2-85 443-530 (1060)
6 PLN03218 maturation of RBCL 1; 99.8 4.2E-20 9.2E-25 133.4 6.9 85 2-86 655-743 (1060)
7 PF13041 PPR_2: PPR repeat fam 99.7 1.2E-17 2.6E-22 81.7 3.5 46 29-74 1-50 (50)
8 PF12854 PPR_1: PPR repeat 99.6 5.1E-15 1.1E-19 67.0 3.3 34 25-58 1-34 (34)
9 PF13041 PPR_2: PPR repeat fam 99.5 1.7E-14 3.6E-19 70.4 3.5 43 1-43 8-50 (50)
10 PF12854 PPR_1: PPR repeat 99.2 6.6E-12 1.4E-16 56.7 2.5 29 58-86 3-31 (34)
11 PF01535 PPR: PPR repeat; Int 98.7 4.6E-09 1E-13 45.7 1.4 30 32-61 1-30 (31)
12 TIGR00756 PPR pentatricopeptid 98.5 4.5E-08 9.8E-13 43.3 1.7 31 1-31 5-35 (35)
13 TIGR00756 PPR pentatricopeptid 98.5 4.2E-08 9.2E-13 43.4 1.4 28 32-59 1-28 (35)
14 PRK11788 tetratricopeptide rep 98.5 3.8E-07 8.3E-12 59.8 6.0 80 6-85 224-305 (389)
15 PF01535 PPR: PPR repeat; Int 98.5 5.9E-08 1.3E-12 42.1 1.5 24 63-86 1-24 (31)
16 PF13812 PPR_3: Pentatricopept 98.4 1E-07 2.2E-12 42.2 1.0 30 32-61 2-31 (34)
17 PF13812 PPR_3: Pentatricopept 98.4 2.6E-07 5.7E-12 40.8 2.3 29 1-29 6-34 (34)
18 PRK11788 tetratricopeptide rep 98.4 1.1E-06 2.3E-11 57.7 5.8 81 3-85 256-341 (389)
19 KOG4422 Uncharacterized conser 98.1 6.5E-06 1.4E-10 56.0 5.2 71 11-81 253-331 (625)
20 KOG4422 Uncharacterized conser 98.0 2.3E-05 4.9E-10 53.4 5.5 79 2-84 213-295 (625)
21 KOG4318 Bicoid mRNA stability 97.9 3E-05 6.5E-10 56.3 5.0 63 17-80 11-101 (1088)
22 TIGR02917 PEP_TPR_lipo putativ 97.8 7.5E-05 1.6E-09 52.7 6.3 78 6-84 577-657 (899)
23 TIGR02917 PEP_TPR_lipo putativ 97.8 8.3E-05 1.8E-09 52.4 6.5 19 37-55 709-727 (899)
24 PF10037 MRP-S27: Mitochondria 97.8 8.8E-05 1.9E-09 50.4 5.9 77 8-84 78-160 (429)
25 PF14559 TPR_19: Tetratricopep 97.8 0.00022 4.8E-09 35.9 6.2 62 8-70 3-66 (68)
26 PF06239 ECSIT: Evolutionarily 97.7 7.8E-05 1.7E-09 46.5 4.6 72 8-79 64-155 (228)
27 PF12895 Apc3: Anaphase-promot 97.7 0.00013 2.9E-09 38.5 4.9 77 9-85 2-81 (84)
28 PF08579 RPM2: Mitochondrial r 97.7 0.00015 3.3E-09 41.0 4.8 73 3-75 32-117 (120)
29 TIGR02552 LcrH_SycD type III s 97.7 0.00027 5.8E-09 40.0 5.9 80 5-85 26-108 (135)
30 PF10037 MRP-S27: Mitochondria 97.6 0.00012 2.5E-09 49.9 4.2 74 2-75 109-186 (429)
31 PRK15359 type III secretion sy 97.6 0.00032 7E-09 40.9 5.5 80 5-85 33-115 (144)
32 cd00189 TPR Tetratricopeptide 97.6 0.00022 4.8E-09 36.3 4.4 80 5-85 9-91 (100)
33 TIGR02521 type_IV_pilW type IV 97.6 0.00051 1.1E-08 41.1 6.5 78 7-85 42-122 (234)
34 PF09976 TPR_21: Tetratricopep 97.5 0.0015 3.2E-08 37.9 7.8 83 4-86 56-142 (145)
35 PF13429 TPR_15: Tetratricopep 97.2 0.00042 9.2E-09 44.0 3.3 76 8-84 192-270 (280)
36 TIGR02521 type_IV_pilW type IV 97.2 0.002 4.4E-08 38.5 6.1 47 37-83 141-190 (234)
37 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0036 7.8E-08 34.2 6.1 81 5-85 11-99 (119)
38 PF13429 TPR_15: Tetratricopep 97.1 0.0014 3E-08 41.7 4.8 81 4-84 118-202 (280)
39 PF04733 Coatomer_E: Coatomer 97.0 0.0016 3.5E-08 42.2 4.9 81 3-85 138-224 (290)
40 PRK11189 lipoprotein NlpI; Pro 97.0 0.0039 8.4E-08 40.3 6.3 79 6-85 74-155 (296)
41 PF12921 ATP13: Mitochondrial 97.0 0.0028 6E-08 36.4 5.0 24 61-84 51-74 (126)
42 PF12921 ATP13: Mitochondrial 97.0 0.0013 2.7E-08 37.9 3.4 70 2-71 8-97 (126)
43 PLN03088 SGT1, suppressor of 96.9 0.0043 9.2E-08 41.3 6.3 79 6-85 12-93 (356)
44 PF00637 Clathrin: Region in C 96.8 0.0024 5.2E-08 36.7 4.0 83 2-84 13-105 (143)
45 PRK10370 formate-dependent nit 96.8 0.0081 1.8E-07 36.8 6.5 80 5-85 82-167 (198)
46 cd05804 StaR_like StaR_like; a 96.8 0.0099 2.1E-07 38.7 7.1 80 5-85 123-209 (355)
47 KOG1915 Cell cycle control pro 96.7 0.008 1.7E-07 41.9 6.2 76 8-85 153-230 (677)
48 TIGR00990 3a0801s09 mitochondr 96.7 0.009 2E-07 42.1 6.6 74 9-83 378-454 (615)
49 PF09295 ChAPs: ChAPs (Chs5p-A 96.7 0.011 2.3E-07 40.1 6.6 49 37-85 240-291 (395)
50 PRK15174 Vi polysaccharide exp 96.6 0.011 2.3E-07 42.3 6.7 75 8-83 88-165 (656)
51 TIGR00990 3a0801s09 mitochondr 96.6 0.0097 2.1E-07 42.0 6.4 80 5-85 408-490 (615)
52 PRK10747 putative protoheme IX 96.6 0.016 3.4E-07 39.0 7.0 78 7-85 305-384 (398)
53 PRK12370 invasion protein regu 96.6 0.01 2.2E-07 41.5 6.2 47 9-56 351-397 (553)
54 PF14559 TPR_19: Tetratricopep 96.6 0.0014 3E-08 32.9 1.4 44 42-85 2-48 (68)
55 PF13432 TPR_16: Tetratricopep 96.5 0.0061 1.3E-07 30.3 3.7 53 5-58 6-58 (65)
56 PRK15174 Vi polysaccharide exp 96.5 0.012 2.5E-07 42.1 6.3 76 8-84 224-306 (656)
57 PF05843 Suf: Suppressor of fo 96.5 0.0024 5.3E-08 41.1 2.6 77 8-85 13-93 (280)
58 PRK11447 cellulose synthase su 96.5 0.018 3.8E-07 43.6 7.4 79 6-85 613-694 (1157)
59 PRK09782 bacteriophage N4 rece 96.4 0.015 3.3E-07 43.5 6.6 73 10-84 590-665 (987)
60 PRK12370 invasion protein regu 96.4 0.02 4.4E-07 40.1 6.7 79 5-85 381-464 (553)
61 PF13424 TPR_12: Tetratricopep 96.3 0.0022 4.7E-08 33.1 1.3 54 32-85 6-69 (78)
62 PRK02603 photosystem I assembl 96.3 0.028 6.1E-07 33.4 6.2 72 6-77 45-121 (172)
63 PRK10747 putative protoheme IX 96.3 0.026 5.6E-07 38.0 6.5 77 7-85 129-210 (398)
64 PF13432 TPR_16: Tetratricopep 96.3 0.0023 5E-08 31.9 1.2 47 39-85 5-54 (65)
65 PF12688 TPR_5: Tetratrico pep 96.2 0.042 9E-07 31.3 6.4 80 6-85 11-98 (120)
66 TIGR00540 hemY_coli hemY prote 96.2 0.053 1.2E-06 36.6 7.7 76 9-86 312-394 (409)
67 PRK09782 bacteriophage N4 rece 96.2 0.025 5.4E-07 42.4 6.5 79 6-85 552-632 (987)
68 PRK14574 hmsH outer membrane p 96.2 0.031 6.6E-07 41.2 6.9 76 7-85 45-125 (822)
69 CHL00033 ycf3 photosystem I as 96.1 0.072 1.6E-06 31.4 7.4 79 6-84 45-135 (168)
70 PRK10049 pgaA outer membrane p 96.1 0.042 9.1E-07 40.0 7.5 78 6-85 59-139 (765)
71 PF03704 BTAD: Bacterial trans 96.1 0.017 3.7E-07 33.3 4.6 49 8-57 74-122 (146)
72 PRK11447 cellulose synthase su 96.1 0.018 3.8E-07 43.6 5.6 76 5-85 582-660 (1157)
73 PRK15359 type III secretion sy 96.1 0.0079 1.7E-07 35.0 3.1 54 33-86 26-82 (144)
74 KOG1840 Kinesin light chain [C 96.0 0.021 4.5E-07 40.0 5.3 82 4-85 207-306 (508)
75 PF03704 BTAD: Bacterial trans 95.9 0.011 2.5E-07 34.0 3.2 54 33-86 64-120 (146)
76 PF05843 Suf: Suppressor of fo 95.8 0.055 1.2E-06 34.9 6.2 77 8-85 48-130 (280)
77 TIGR00540 hemY_coli hemY prote 95.8 0.044 9.6E-07 36.9 6.0 78 6-85 128-210 (409)
78 cd00189 TPR Tetratricopeptide 95.8 0.011 2.4E-07 29.7 2.5 52 34-85 3-57 (100)
79 PRK10049 pgaA outer membrane p 95.7 0.055 1.2E-06 39.4 6.4 77 8-85 27-106 (765)
80 PRK14574 hmsH outer membrane p 95.7 0.048 1E-06 40.2 6.1 82 4-85 300-390 (822)
81 KOG1840 Kinesin light chain [C 95.6 0.058 1.3E-06 37.8 6.1 81 5-85 376-473 (508)
82 PF13371 TPR_9: Tetratricopept 95.6 0.046 1E-06 27.5 4.4 54 4-58 3-56 (73)
83 KOG3081 Vesicle coat complex C 95.6 0.023 5.1E-07 36.8 3.7 78 8-85 149-230 (299)
84 smart00299 CLH Clathrin heavy 95.5 0.15 3.3E-06 29.1 6.8 81 2-84 13-104 (140)
85 PF04840 Vps16_C: Vps16, C-ter 95.4 0.058 1.3E-06 35.6 5.2 51 29-81 206-256 (319)
86 COG5010 TadD Flp pilus assembl 95.3 0.068 1.5E-06 34.3 5.2 79 6-85 110-191 (257)
87 PF13414 TPR_11: TPR repeat; P 95.3 0.014 3.1E-07 29.2 1.8 51 33-83 5-59 (69)
88 PF13371 TPR_9: Tetratricopept 95.2 0.021 4.6E-07 28.8 2.3 47 39-85 3-52 (73)
89 PRK11189 lipoprotein NlpI; Pro 95.1 0.16 3.5E-06 32.9 6.7 79 5-85 107-188 (296)
90 KOG3616 Selective LIM binding 95.0 0.07 1.5E-06 39.5 5.1 71 6-85 775-847 (1636)
91 KOG3785 Uncharacterized conser 94.9 0.093 2E-06 35.7 5.2 81 4-85 401-484 (557)
92 COG3063 PilF Tfp pilus assembl 94.9 0.28 6E-06 31.3 7.0 80 5-85 44-126 (250)
93 PRK15363 pathogenicity island 94.9 0.4 8.6E-06 28.7 7.3 80 6-86 45-127 (157)
94 PF09976 TPR_21: Tetratricopep 94.8 0.37 8E-06 27.8 7.1 77 8-85 23-108 (145)
95 TIGR02508 type_III_yscG type I 94.7 0.28 6E-06 27.5 5.9 56 14-70 23-78 (115)
96 KOG3941 Intermediate in Toll s 94.7 0.13 2.8E-06 34.1 5.2 70 9-78 85-174 (406)
97 PLN03098 LPA1 LOW PSII ACCUMUL 94.6 0.078 1.7E-06 36.6 4.3 56 30-85 74-135 (453)
98 PF13424 TPR_12: Tetratricopep 94.6 0.057 1.2E-06 27.6 3.0 52 5-56 14-71 (78)
99 cd05804 StaR_like StaR_like; a 94.4 0.14 3.1E-06 33.3 5.2 52 34-85 117-171 (355)
100 KOG4318 Bicoid mRNA stability 94.4 0.059 1.3E-06 40.1 3.5 75 4-81 212-290 (1088)
101 PRK15179 Vi polysaccharide bio 94.3 0.19 4.2E-06 36.6 6.0 79 5-85 129-211 (694)
102 PF06239 ECSIT: Evolutionarily 94.3 0.079 1.7E-06 33.4 3.6 37 11-47 118-154 (228)
103 COG4783 Putative Zn-dependent 94.2 0.27 5.8E-06 34.3 6.1 48 9-57 319-366 (484)
104 PF13414 TPR_11: TPR repeat; P 94.1 0.2 4.4E-06 24.8 4.4 50 6-56 13-63 (69)
105 KOG2002 TPR-containing nuclear 94.1 0.07 1.5E-06 39.8 3.5 78 6-84 656-738 (1018)
106 COG5107 RNA14 Pre-mRNA 3'-end 94.0 0.09 1.9E-06 36.8 3.7 78 7-85 408-489 (660)
107 PF09295 ChAPs: ChAPs (Chs5p-A 94.0 0.24 5.3E-06 33.7 5.7 51 6-58 244-295 (395)
108 TIGR02552 LcrH_SycD type III s 93.9 0.071 1.5E-06 29.9 2.7 54 32-85 18-74 (135)
109 TIGR03302 OM_YfiO outer membra 93.8 0.28 6E-06 30.2 5.4 75 9-85 128-226 (235)
110 KOG2003 TPR repeat-containing 93.8 0.17 3.8E-06 35.5 4.7 54 32-85 627-683 (840)
111 PF13176 TPR_7: Tetratricopept 93.6 0.062 1.3E-06 23.8 1.7 20 65-84 2-21 (36)
112 COG2956 Predicted N-acetylgluc 93.5 0.27 5.8E-06 33.0 5.1 80 5-84 78-163 (389)
113 PF13176 TPR_7: Tetratricopept 93.5 0.11 2.3E-06 23.0 2.4 24 33-56 1-24 (36)
114 PF08579 RPM2: Mitochondrial r 93.5 0.23 4.9E-06 28.4 4.1 32 12-43 85-116 (120)
115 KOG2076 RNA polymerase III tra 93.5 0.27 5.8E-06 36.6 5.4 83 3-85 421-506 (895)
116 PF04733 Coatomer_E: Coatomer 93.5 0.39 8.5E-06 31.3 5.8 68 10-78 181-251 (290)
117 PRK10803 tol-pal system protei 93.3 0.67 1.5E-05 29.8 6.6 76 8-85 155-240 (263)
118 TIGR03302 OM_YfiO outer membra 93.3 0.3 6.4E-06 30.1 4.9 79 5-85 42-138 (235)
119 COG5010 TadD Flp pilus assembl 93.2 0.82 1.8E-05 29.5 6.8 79 5-84 143-224 (257)
120 PF13428 TPR_14: Tetratricopep 93.2 0.11 2.5E-06 23.8 2.3 36 33-68 3-41 (44)
121 PRK10153 DNA-binding transcrip 93.1 0.44 9.6E-06 33.5 5.9 59 27-85 416-476 (517)
122 COG3071 HemY Uncharacterized e 93.0 0.55 1.2E-05 32.0 6.0 76 8-85 306-384 (400)
123 PF04840 Vps16_C: Vps16, C-ter 92.8 0.81 1.8E-05 30.3 6.6 69 3-83 215-283 (319)
124 PRK02603 photosystem I assembl 92.5 0.86 1.9E-05 27.0 6.0 55 31-85 35-95 (172)
125 PRK10370 formate-dependent nit 92.5 0.91 2E-05 27.8 6.2 74 11-85 54-133 (198)
126 PRK15179 Vi polysaccharide bio 92.4 0.87 1.9E-05 33.3 6.8 78 7-86 97-178 (694)
127 COG3629 DnrI DNA-binding trans 92.4 0.25 5.3E-06 32.2 3.7 55 31-85 153-210 (280)
128 KOG4626 O-linked N-acetylgluco 92.2 0.49 1.1E-05 34.6 5.2 47 8-56 298-345 (966)
129 PF12895 Apc3: Anaphase-promot 92.2 0.15 3.2E-06 26.6 2.1 51 4-56 33-83 (84)
130 TIGR02795 tol_pal_ybgF tol-pal 92.1 0.71 1.5E-05 24.8 5.0 56 4-59 47-104 (119)
131 PF09205 DUF1955: Domain of un 92.1 0.51 1.1E-05 27.9 4.4 56 3-59 93-148 (161)
132 PF13374 TPR_10: Tetratricopep 92.1 0.27 5.7E-06 21.7 2.7 26 32-57 3-28 (42)
133 PF12569 NARP1: NMDA receptor- 91.9 0.84 1.8E-05 32.3 6.1 50 8-58 240-289 (517)
134 PF07721 TPR_4: Tetratricopept 91.6 0.44 9.6E-06 19.4 2.9 20 36-55 6-25 (26)
135 KOG3785 Uncharacterized conser 91.4 0.86 1.9E-05 31.3 5.5 49 37-85 399-451 (557)
136 COG4783 Putative Zn-dependent 91.4 1.6 3.6E-05 30.6 6.9 76 6-83 350-429 (484)
137 CHL00033 ycf3 photosystem I as 91.4 0.56 1.2E-05 27.6 4.3 73 13-85 16-95 (168)
138 KOG2002 TPR-containing nuclear 91.3 0.066 1.4E-06 40.0 0.3 75 10-85 626-703 (1018)
139 KOG0553 TPR repeat-containing 91.0 1 2.2E-05 29.7 5.4 79 7-86 92-173 (304)
140 PLN03088 SGT1, suppressor of 90.8 1.2 2.6E-05 29.8 5.8 65 4-69 44-110 (356)
141 KOG1915 Cell cycle control pro 90.7 1 2.2E-05 32.0 5.4 77 8-85 119-197 (677)
142 PF11848 DUF3368: Domain of un 90.3 0.79 1.7E-05 21.8 3.4 34 7-40 13-46 (48)
143 KOG1173 Anaphase-promoting com 90.0 0.97 2.1E-05 32.3 4.9 78 9-86 427-513 (611)
144 KOG1914 mRNA cleavage and poly 90.0 1.2 2.6E-05 32.0 5.3 47 8-55 378-425 (656)
145 KOG3616 Selective LIM binding 89.8 1.2 2.6E-05 33.5 5.3 75 3-84 798-872 (1636)
146 COG3063 PilF Tfp pilus assembl 89.8 1.1 2.4E-05 28.7 4.7 80 5-85 78-162 (250)
147 KOG2053 Mitochondrial inherita 89.6 0.79 1.7E-05 34.3 4.4 68 9-77 56-125 (932)
148 KOG1070 rRNA processing protei 89.5 0.76 1.6E-05 36.2 4.3 71 11-84 1512-1586(1710)
149 KOG4626 O-linked N-acetylgluco 89.0 1.6 3.4E-05 32.1 5.4 81 4-85 328-411 (966)
150 PF13170 DUF4003: Protein of u 88.6 1.2 2.5E-05 29.3 4.3 66 12-79 78-156 (297)
151 KOG2280 Vacuolar assembly/sort 88.5 0.74 1.6E-05 33.9 3.6 70 4-84 723-792 (829)
152 PF12688 TPR_5: Tetratrico pep 88.3 2.5 5.5E-05 24.0 5.1 69 4-74 46-118 (120)
153 PF10602 RPN7: 26S proteasome 88.2 4 8.6E-05 24.7 6.2 52 32-83 37-94 (177)
154 KOG1155 Anaphase-promoting com 88.0 1.2 2.7E-05 31.3 4.3 59 27-85 427-489 (559)
155 PF13431 TPR_17: Tetratricopep 88.0 0.84 1.8E-05 19.9 2.4 22 61-82 12-33 (34)
156 KOG2053 Mitochondrial inherita 87.9 2.3 4.9E-05 32.1 5.7 76 8-85 21-100 (932)
157 KOG2047 mRNA splicing factor [ 87.5 0.65 1.4E-05 33.9 2.8 43 32-74 249-293 (835)
158 PF12569 NARP1: NMDA receptor- 87.3 3.3 7.1E-05 29.4 6.1 78 6-85 204-285 (517)
159 COG3071 HemY Uncharacterized e 87.1 1.5 3.2E-05 30.0 4.2 50 6-57 338-387 (400)
160 PLN03098 LPA1 LOW PSII ACCUMUL 87.0 2.6 5.6E-05 29.5 5.4 71 5-77 84-176 (453)
161 PF09477 Type_III_YscG: Bacter 86.9 4 8.7E-05 23.1 6.6 67 12-81 22-88 (116)
162 PRK10153 DNA-binding transcrip 86.2 2.3 5E-05 30.1 4.9 48 8-57 432-479 (517)
163 KOG1126 DNA-binding cell divis 86.2 1.9 4.1E-05 31.2 4.5 42 42-83 568-612 (638)
164 KOG0548 Molecular co-chaperone 85.9 2.2 4.7E-05 30.3 4.6 69 6-79 368-436 (539)
165 PF11207 DUF2989: Protein of u 85.9 5.6 0.00012 24.9 6.0 69 13-82 123-198 (203)
166 PF11846 DUF3366: Domain of un 85.7 3.1 6.8E-05 25.1 4.9 49 10-58 122-171 (193)
167 KOG1070 rRNA processing protei 85.6 3.3 7.1E-05 33.0 5.7 84 2-86 1536-1658(1710)
168 COG3629 DnrI DNA-binding trans 85.5 2.3 5E-05 27.9 4.3 68 3-71 160-236 (280)
169 KOG4570 Uncharacterized conser 85.2 1.6 3.5E-05 29.4 3.6 46 12-57 116-161 (418)
170 KOG1129 TPR repeat-containing 84.7 4.4 9.5E-05 27.7 5.4 80 4-85 231-313 (478)
171 KOG4162 Predicted calmodulin-b 84.7 2.1 4.5E-05 31.7 4.2 66 20-85 312-380 (799)
172 KOG0547 Translocase of outer m 84.7 1.6 3.4E-05 31.1 3.5 80 6-86 472-561 (606)
173 KOG1126 DNA-binding cell divis 84.1 2.7 6E-05 30.5 4.5 80 5-85 498-580 (638)
174 PF10366 Vps39_1: Vacuolar sor 83.7 5.2 0.00011 22.3 4.8 50 35-85 3-62 (108)
175 PRK14720 transcript cleavage f 83.7 1.3 2.8E-05 33.4 2.9 50 33-83 118-170 (906)
176 KOG1125 TPR repeat-containing 83.6 2.6 5.6E-05 30.2 4.2 78 8-85 406-487 (579)
177 PRK10803 tol-pal system protei 83.5 1.8 3.8E-05 27.9 3.2 55 31-85 143-203 (263)
178 PF00515 TPR_1: Tetratricopept 83.1 2.4 5.2E-05 17.8 2.7 26 32-57 2-27 (34)
179 COG2956 Predicted N-acetylgluc 82.9 6.5 0.00014 26.7 5.6 48 9-56 227-274 (389)
180 PF10366 Vps39_1: Vacuolar sor 82.4 2.6 5.5E-05 23.5 3.2 48 6-59 20-67 (108)
181 TIGR02561 HrpB1_HrpK type III 82.4 2.9 6.2E-05 25.0 3.5 64 8-75 22-89 (153)
182 PF09613 HrpB1_HrpK: Bacterial 82.1 3.9 8.4E-05 24.6 4.1 65 6-74 20-89 (160)
183 PF08311 Mad3_BUB1_I: Mad3/BUB 82.0 6.9 0.00015 22.3 5.0 37 49-85 81-122 (126)
184 KOG3941 Intermediate in Toll s 81.8 2.8 6.1E-05 28.0 3.6 33 15-47 142-174 (406)
185 PRK15363 pathogenicity island 81.1 4.7 0.0001 24.2 4.2 51 6-57 79-129 (157)
186 PRK15331 chaperone protein Sic 81.1 9.9 0.00021 23.0 6.1 77 8-85 49-128 (165)
187 PF13512 TPR_18: Tetratricopep 81.1 9 0.0002 22.6 5.4 69 8-76 22-96 (142)
188 PF10579 Rapsyn_N: Rapsyn N-te 80.7 6.7 0.00015 20.9 4.8 45 8-52 18-64 (80)
189 PF13929 mRNA_stabil: mRNA sta 80.4 3.3 7.2E-05 27.3 3.6 73 12-84 182-260 (292)
190 KOG1127 TPR repeat-containing 80.1 6.7 0.00014 30.4 5.4 49 9-59 575-624 (1238)
191 KOG1174 Anaphase-promoting com 79.4 5.1 0.00011 28.1 4.4 51 9-59 209-260 (564)
192 PF10300 DUF3808: Protein of u 79.4 12 0.00025 26.2 6.2 75 9-85 246-328 (468)
193 KOG3081 Vesicle coat complex C 78.8 3.9 8.5E-05 26.9 3.5 70 8-78 185-257 (299)
194 cd08326 CARD_CASP9 Caspase act 78.1 8.4 0.00018 20.5 4.2 63 15-81 18-80 (84)
195 KOG1128 Uncharacterized conser 78.1 3.2 6.9E-05 30.7 3.2 26 60-85 550-576 (777)
196 COG5107 RNA14 Pre-mRNA 3'-end 78.0 4.6 0.0001 28.7 3.8 58 28-85 39-99 (660)
197 PRK14720 transcript cleavage f 77.9 12 0.00025 28.7 6.1 53 4-58 124-176 (906)
198 PF07719 TPR_2: Tetratricopept 77.7 4.1 9E-05 16.8 2.7 24 34-57 4-27 (34)
199 KOG1914 mRNA cleavage and poly 77.6 5 0.00011 29.0 4.0 57 28-85 17-76 (656)
200 TIGR03504 FimV_Cterm FimV C-te 77.2 6.1 0.00013 18.4 3.1 23 4-26 7-29 (44)
201 KOG0547 Translocase of outer m 76.7 2 4.4E-05 30.5 1.9 75 6-82 125-203 (606)
202 PF14669 Asp_Glu_race_2: Putat 76.1 4.6 9.9E-05 25.4 3.1 56 2-57 138-207 (233)
203 KOG2003 TPR repeat-containing 75.9 10 0.00022 27.2 5.0 75 9-84 503-614 (840)
204 PF13181 TPR_8: Tetratricopept 75.3 5.1 0.00011 16.6 2.5 24 33-56 3-26 (34)
205 KOG1173 Anaphase-promoting com 75.2 12 0.00027 27.1 5.4 70 5-75 464-535 (611)
206 KOG2796 Uncharacterized conser 75.1 11 0.00023 25.2 4.7 52 8-59 224-280 (366)
207 KOG0550 Molecular chaperone (D 74.7 7.4 0.00016 27.2 4.1 71 7-81 260-333 (486)
208 COG2405 Predicted nucleic acid 74.6 6.4 0.00014 23.4 3.3 35 6-40 119-153 (157)
209 KOG1155 Anaphase-promoting com 73.4 6.7 0.00015 27.8 3.7 63 6-68 237-305 (559)
210 KOG0495 HAT repeat protein [RN 73.1 19 0.00041 27.0 5.9 76 8-84 596-673 (913)
211 COG3898 Uncharacterized membra 72.9 26 0.00056 24.7 6.3 76 9-85 97-211 (531)
212 PF04184 ST7: ST7 protein; In 72.9 30 0.00066 24.9 6.7 64 7-70 270-339 (539)
213 PRK04841 transcriptional regul 72.8 15 0.00034 27.2 5.7 79 7-85 463-554 (903)
214 KOG0985 Vesicle coat protein c 72.4 27 0.00059 27.7 6.7 53 2-56 1139-1191(1666)
215 KOG0548 Molecular co-chaperone 72.2 11 0.00023 27.1 4.5 79 6-85 12-93 (539)
216 KOG3060 Uncharacterized conser 71.9 9.9 0.00021 25.0 4.0 74 9-83 99-175 (289)
217 PRK04841 transcriptional regul 71.0 27 0.00059 25.9 6.6 80 6-85 541-635 (903)
218 PF09613 HrpB1_HrpK: Bacterial 70.3 21 0.00046 21.5 6.8 16 9-24 57-72 (160)
219 PF04124 Dor1: Dor1-like famil 70.2 6 0.00013 26.3 2.9 36 2-37 112-148 (338)
220 KOG2376 Signal recognition par 70.1 32 0.00068 25.3 6.4 75 6-85 120-198 (652)
221 PF07035 Mic1: Colon cancer-as 70.0 22 0.00047 21.6 6.4 39 17-55 15-53 (167)
222 KOG1125 TPR repeat-containing 69.9 7.8 0.00017 27.9 3.5 77 8-85 442-521 (579)
223 KOG4334 Uncharacterized conser 69.6 7.3 0.00016 27.8 3.2 35 10-44 539-573 (650)
224 cd07153 Fur_like Ferric uptake 69.6 9.1 0.0002 21.0 3.2 48 2-49 6-53 (116)
225 PF07079 DUF1347: Protein of u 69.5 8.6 0.00019 27.3 3.6 44 4-47 136-183 (549)
226 PF12926 MOZART2: Mitotic-spin 69.4 16 0.00035 19.8 4.1 42 17-58 29-70 (88)
227 cd08819 CARD_MDA5_2 Caspase ac 68.9 17 0.00036 19.8 6.5 68 14-83 20-87 (88)
228 KOG1129 TPR repeat-containing 68.5 12 0.00025 25.8 3.9 57 29-85 221-279 (478)
229 PF11491 DUF3213: Protein of u 67.9 0.73 1.6E-05 24.7 -1.4 25 23-47 16-40 (88)
230 PF02284 COX5A: Cytochrome c o 67.9 16 0.00034 20.6 3.8 56 15-70 29-87 (108)
231 PF07079 DUF1347: Protein of u 67.7 8.8 0.00019 27.2 3.3 68 8-75 91-180 (549)
232 PF11207 DUF2989: Protein of u 67.7 22 0.00047 22.3 4.8 49 4-52 148-199 (203)
233 KOG2076 RNA polymerase III tra 67.3 26 0.00055 26.8 5.7 78 8-85 389-472 (895)
234 KOG4648 Uncharacterized conser 67.3 6.4 0.00014 27.1 2.5 41 40-80 106-149 (536)
235 PF13525 YfiO: Outer membrane 67.1 26 0.00057 21.4 5.3 52 7-58 16-69 (203)
236 smart00028 TPR Tetratricopepti 67.1 6.5 0.00014 14.8 1.8 25 33-57 3-27 (34)
237 smart00777 Mad3_BUB1_I Mad3/BU 67.0 16 0.00034 21.1 3.8 38 49-86 81-123 (125)
238 KOG1128 Uncharacterized conser 66.9 11 0.00023 28.2 3.7 53 33-85 426-480 (777)
239 COG4700 Uncharacterized protei 66.3 30 0.00066 21.9 5.2 54 4-57 97-150 (251)
240 PRK15331 chaperone protein Sic 66.1 5.9 0.00013 24.0 2.0 44 42-85 48-94 (165)
241 PF14689 SPOB_a: Sensor_kinase 66.1 7.4 0.00016 19.4 2.1 20 3-22 30-49 (62)
242 PF04053 Coatomer_WDAD: Coatom 66.1 14 0.00029 25.8 4.0 42 42-85 329-370 (443)
243 COG4235 Cytochrome c biogenesi 65.8 25 0.00055 23.3 5.0 17 8-24 168-184 (287)
244 cd00923 Cyt_c_Oxidase_Va Cytoc 65.6 22 0.00047 19.9 4.1 57 14-70 25-84 (103)
245 PF13174 TPR_6: Tetratricopept 65.6 4.8 0.0001 16.4 1.2 19 7-25 11-29 (33)
246 KOG2223 Uncharacterized conser 65.5 14 0.00031 26.1 4.0 43 15-57 458-500 (586)
247 COG3947 Response regulator con 65.2 12 0.00025 25.2 3.4 45 34-78 282-329 (361)
248 PF11663 Toxin_YhaV: Toxin wit 64.4 5.7 0.00012 23.4 1.7 31 8-40 107-137 (140)
249 KOG2047 mRNA splicing factor [ 64.2 17 0.00037 27.1 4.3 24 62-85 248-271 (835)
250 PF13963 Transpos_assoc: Trans 64.1 4 8.6E-05 21.3 1.0 27 8-34 46-72 (77)
251 PF13929 mRNA_stabil: mRNA sta 63.6 41 0.00089 22.4 6.4 53 3-55 209-262 (292)
252 PF09205 DUF1955: Domain of un 63.3 17 0.00037 21.6 3.5 53 33-85 88-143 (161)
253 KOG4162 Predicted calmodulin-b 63.1 25 0.00053 26.5 4.9 75 10-86 698-778 (799)
254 PF10602 RPN7: 26S proteasome 63.1 23 0.00051 21.3 4.3 79 5-85 45-136 (177)
255 PRK10866 outer membrane biogen 62.9 24 0.00051 22.4 4.4 49 8-58 44-96 (243)
256 cd08332 CARD_CASP2 Caspase act 62.7 22 0.00049 19.1 4.0 63 15-81 22-84 (90)
257 COG5210 GTPase-activating prot 61.3 20 0.00044 25.2 4.2 43 15-57 361-403 (496)
258 smart00544 MA3 Domain in DAP-5 60.5 23 0.0005 19.3 3.7 21 3-23 9-29 (113)
259 PRK10564 maltose regulon perip 60.1 7.4 0.00016 25.8 1.8 26 60-85 254-280 (303)
260 KOG1156 N-terminal acetyltrans 59.6 52 0.0011 24.5 6.0 77 5-83 380-460 (700)
261 KOG4555 TPR repeat-containing 59.2 9.6 0.00021 22.7 2.0 51 6-57 53-103 (175)
262 KOG2376 Signal recognition par 59.1 35 0.00076 25.1 5.0 50 5-55 21-70 (652)
263 PF11846 DUF3366: Domain of un 59.1 16 0.00036 22.0 3.2 27 59-85 141-167 (193)
264 KOG3617 WD40 and TPR repeat-co 59.1 53 0.0011 25.7 6.0 69 8-85 812-881 (1416)
265 PF02607 B12-binding_2: B12 bi 58.7 6.6 0.00014 20.0 1.2 40 8-47 13-52 (79)
266 COG4235 Cytochrome c biogenesi 57.7 53 0.0012 21.8 5.8 60 11-71 208-269 (287)
267 PF13934 ELYS: Nuclear pore co 57.4 46 0.001 21.0 5.3 45 37-83 114-161 (226)
268 smart00386 HAT HAT (Half-A-TPR 57.4 13 0.00029 14.7 4.1 29 10-39 1-29 (33)
269 TIGR02328 conserved hypothetic 57.0 11 0.00023 21.6 1.9 19 14-32 53-71 (120)
270 KOG0553 TPR repeat-containing 56.7 42 0.00091 22.4 4.8 60 5-66 124-186 (304)
271 PF00566 RabGAP-TBC: Rab-GTPas 56.6 17 0.00036 21.8 2.9 40 16-55 149-188 (214)
272 KOG1127 TPR repeat-containing 56.1 11 0.00024 29.3 2.3 27 60-86 594-620 (1238)
273 KOG4555 TPR repeat-containing 55.3 41 0.00088 20.2 4.2 44 40-83 52-98 (175)
274 smart00164 TBC Domain in Tre-2 55.0 42 0.00091 20.0 4.5 24 61-84 166-189 (199)
275 smart00804 TAP_C C-terminal do 54.6 12 0.00027 18.8 1.8 23 10-32 39-62 (63)
276 KOG0985 Vesicle coat protein c 54.5 38 0.00082 27.0 4.8 51 31-83 1133-1187(1666)
277 PF04124 Dor1: Dor1-like famil 53.9 9.7 0.00021 25.4 1.7 24 62-85 106-129 (338)
278 PLN02789 farnesyltranstransfer 53.6 61 0.0013 21.6 5.3 23 61-83 141-163 (320)
279 PF12862 Apc5: Anaphase-promot 53.2 34 0.00074 18.2 4.9 52 7-58 9-68 (94)
280 PF14938 SNAP: Soluble NSF att 53.1 59 0.0013 20.9 5.5 53 5-58 164-223 (282)
281 PF09670 Cas_Cas02710: CRISPR- 53.0 65 0.0014 22.0 5.5 50 7-57 142-195 (379)
282 COG3118 Thioredoxin domain-con 52.0 46 0.001 22.3 4.4 52 6-58 144-195 (304)
283 cd04400 RhoGAP_fBEM3 RhoGAP_fB 51.6 53 0.0011 19.9 5.4 54 6-71 45-108 (190)
284 PF04034 DUF367: Domain of unk 51.1 48 0.001 19.3 4.9 52 32-83 67-120 (127)
285 PF13934 ELYS: Nuclear pore co 51.0 61 0.0013 20.4 5.3 76 3-81 115-195 (226)
286 KOG1174 Anaphase-promoting com 50.1 30 0.00065 24.6 3.5 56 27-82 327-388 (564)
287 COG4105 ComL DNA uptake lipopr 49.9 70 0.0015 20.9 5.0 50 8-57 46-97 (254)
288 PF14840 DNA_pol3_delt_C: Proc 49.9 30 0.00064 19.8 3.1 27 9-35 10-36 (125)
289 KOG4570 Uncharacterized conser 49.8 32 0.00069 23.5 3.5 39 46-84 115-157 (418)
290 PF04053 Coatomer_WDAD: Coatom 48.8 24 0.00053 24.6 3.0 71 9-85 331-425 (443)
291 cd07229 Pat_TGL3_like Triacylg 48.8 85 0.0018 21.8 5.5 62 17-78 172-253 (391)
292 COG4455 ImpE Protein of avirul 48.4 53 0.0012 21.3 4.2 68 3-71 8-81 (273)
293 PF00531 Death: Death domain; 48.0 33 0.00071 17.3 2.9 38 13-52 41-78 (83)
294 PF02847 MA3: MA3 domain; Int 47.6 11 0.00024 20.5 1.0 20 38-57 9-28 (113)
295 COG0735 Fur Fe2+/Zn2+ uptake r 47.3 38 0.00083 19.8 3.3 42 17-59 7-48 (145)
296 COG4455 ImpE Protein of avirul 47.1 31 0.00067 22.4 3.0 50 34-83 4-56 (273)
297 PF01475 FUR: Ferric uptake re 46.9 36 0.00079 18.8 3.1 45 4-48 15-59 (120)
298 KOG2214 Predicted esterase of 46.9 42 0.00091 24.2 3.9 20 59-78 313-332 (543)
299 PRK10564 maltose regulon perip 46.9 39 0.00085 22.6 3.6 32 28-59 253-285 (303)
300 cd08318 Death_NMPP84 Death dom 46.6 45 0.00097 17.6 4.1 23 63-85 64-86 (86)
301 cd04445 DEP_PLEK1 DEP (Disheve 46.1 29 0.00062 19.3 2.4 40 9-48 9-48 (99)
302 COG5108 RPO41 Mitochondrial DN 46.0 73 0.0016 24.3 5.0 71 1-71 33-112 (1117)
303 PF04184 ST7: ST7 protein; In 45.5 41 0.00089 24.2 3.6 43 43-85 271-318 (539)
304 PF10963 DUF2765: Protein of u 44.9 17 0.00038 19.4 1.5 34 26-59 11-44 (83)
305 KOG0403 Neoplastic transformat 44.4 52 0.0011 23.7 4.0 54 2-56 515-568 (645)
306 PF03013 Pyr_excise: Pyrimidin 44.3 17 0.00037 21.1 1.5 24 15-38 65-88 (130)
307 PF12796 Ank_2: Ankyrin repeat 44.2 30 0.00065 17.6 2.4 66 7-79 5-73 (89)
308 PF11817 Foie-gras_1: Foie gra 43.8 83 0.0018 19.9 5.4 52 32-83 179-239 (247)
309 KOG0037 Ca2+-binding protein, 43.6 79 0.0017 20.2 4.4 30 16-45 144-173 (221)
310 PF13762 MNE1: Mitochondrial s 43.1 55 0.0012 19.4 3.5 48 29-76 77-129 (145)
311 KOG3617 WD40 and TPR repeat-co 42.7 75 0.0016 24.9 4.7 47 6-58 738-784 (1416)
312 TIGR03236 dnd_assoc_1 dnd syst 42.7 36 0.00079 23.3 3.0 37 13-49 313-349 (363)
313 KOG1538 Uncharacterized conser 42.7 29 0.00064 26.1 2.7 51 35-85 777-840 (1081)
314 PRK11639 zinc uptake transcrip 42.4 44 0.00095 20.0 3.1 38 20-58 15-52 (169)
315 PF04388 Hamartin: Hamartin pr 42.1 1.4E+02 0.0031 22.2 6.4 66 9-77 18-83 (668)
316 KOG0991 Replication factor C, 42.1 41 0.00088 22.2 3.0 29 8-36 250-278 (333)
317 cd06182 CYPOR_like NADPH cytoc 41.7 90 0.002 20.0 4.7 16 62-77 246-261 (267)
318 COG4003 Uncharacterized protei 41.4 31 0.00066 18.7 2.0 25 2-26 37-61 (98)
319 PF09868 DUF2095: Uncharacteri 41.2 71 0.0015 18.4 4.1 24 36-59 66-89 (128)
320 KOG2280 Vacuolar assembly/sort 41.2 88 0.0019 23.8 4.8 71 9-85 697-767 (829)
321 cd04372 RhoGAP_chimaerin RhoGA 41.0 83 0.0018 19.1 5.7 54 7-72 39-102 (194)
322 KOG2796 Uncharacterized conser 41.0 84 0.0018 21.1 4.3 48 11-58 192-239 (366)
323 cd07209 Pat_hypo_Ecoli_Z1214_l 40.2 60 0.0013 20.0 3.6 52 18-70 16-73 (215)
324 PF13961 DUF4219: Domain of un 39.7 33 0.0007 14.1 2.1 22 61-82 5-26 (27)
325 COG1729 Uncharacterized protei 39.7 1.1E+02 0.0024 20.1 5.8 77 7-85 152-238 (262)
326 cd04386 RhoGAP_nadrin RhoGAP_n 39.6 90 0.002 19.1 5.4 35 7-41 43-84 (203)
327 smart00165 UBA Ubiquitin assoc 38.6 38 0.00081 14.5 4.2 33 17-53 3-35 (37)
328 PF02758 PYRIN: PAAD/DAPIN/Pyr 38.4 13 0.00029 19.5 0.4 29 32-60 47-75 (83)
329 PF07720 TPR_3: Tetratricopept 38.2 32 0.00069 15.1 1.6 14 71-84 10-23 (36)
330 COG3118 Thioredoxin domain-con 38.0 1.2E+02 0.0027 20.3 5.3 81 4-84 176-258 (304)
331 KOG0543 FKBP-type peptidyl-pro 37.6 1.4E+02 0.0031 20.8 6.0 81 5-85 217-314 (397)
332 KOG4609 Predicted phosphoglyce 37.6 73 0.0016 20.6 3.6 64 13-82 120-203 (284)
333 cd08305 Pyrin Pyrin: a protein 37.2 17 0.00038 18.7 0.7 29 33-61 39-67 (73)
334 cd07231 Pat_SDP1-like Sugar-De 37.1 85 0.0018 21.2 4.0 60 18-77 86-184 (323)
335 COG3682 Predicted transcriptio 37.0 86 0.0019 18.1 3.7 36 12-48 20-55 (123)
336 PF02184 HAT: HAT (Half-A-TPR) 36.6 43 0.00094 14.6 2.4 22 12-35 3-24 (32)
337 TIGR01529 argR_whole arginine 36.5 74 0.0016 18.7 3.4 38 3-40 7-44 (146)
338 PF04097 Nic96: Nup93/Nic96; 36.4 69 0.0015 23.4 3.8 43 32-75 113-158 (613)
339 cd04384 RhoGAP_CdGAP RhoGAP_Cd 35.6 1.1E+02 0.0023 18.8 5.4 35 7-41 40-82 (195)
340 PF07443 HARP: HepA-related pr 35.6 24 0.00052 17.4 1.0 15 45-59 6-20 (55)
341 cd08321 Pyrin_ASC-like Pyrin D 35.5 21 0.00045 18.9 0.9 29 33-61 47-75 (82)
342 TIGR01503 MthylAspMut_E methyl 35.5 25 0.00053 25.0 1.4 45 10-57 68-112 (480)
343 smart00540 LEM in nuclear memb 35.2 25 0.00053 16.5 1.0 20 16-35 9-28 (44)
344 cd04385 RhoGAP_ARAP RhoGAP_ARA 35.1 1E+02 0.0023 18.6 5.4 37 6-42 37-80 (184)
345 PF07875 Coat_F: Coat F domain 35.0 49 0.0011 16.3 2.2 18 12-29 44-61 (64)
346 PF05944 Phage_term_smal: Phag 34.7 51 0.0011 19.2 2.5 26 3-28 55-80 (132)
347 smart00324 RhoGAP GTPase-activ 34.5 98 0.0021 18.1 5.5 38 6-43 25-68 (174)
348 PF14518 Haem_oxygenas_2: Iron 34.2 79 0.0017 16.9 3.7 41 45-85 61-101 (106)
349 cd08780 Death_TRADD Death Doma 34.1 84 0.0018 17.1 5.0 50 35-84 36-87 (90)
350 KOG1920 IkappaB kinase complex 34.1 79 0.0017 25.3 3.9 52 3-57 972-1025(1265)
351 KOG1585 Protein required for f 34.1 1.3E+02 0.0028 20.0 4.4 42 12-55 74-115 (308)
352 PF12816 Vps8: Golgi CORVET co 34.0 1.2E+02 0.0025 18.8 4.1 50 29-79 20-69 (196)
353 COG3947 Response regulator con 33.6 1E+02 0.0022 21.0 3.9 54 4-58 287-340 (361)
354 KOG2114 Vacuolar assembly/sort 33.3 2.3E+02 0.0049 22.1 5.9 75 7-82 408-483 (933)
355 KOG3154 Uncharacterized conser 33.1 74 0.0016 20.5 3.1 50 34-83 150-201 (263)
356 PF10300 DUF3808: Protein of u 33.1 1.8E+02 0.0038 20.5 6.1 84 3-86 195-291 (468)
357 cd08320 Pyrin_NALPs Pyrin deat 33.0 20 0.00044 19.1 0.6 28 32-59 46-73 (86)
358 PF05119 Terminase_4: Phage te 32.8 71 0.0015 16.9 2.8 42 16-57 2-46 (100)
359 PF13281 DUF4071: Domain of un 32.3 1.7E+02 0.0037 20.2 5.4 50 36-85 146-205 (374)
360 PF02840 Prp18: Prp18 domain; 32.1 93 0.002 18.5 3.3 41 18-58 46-86 (144)
361 cd08789 CARD_IPS-1_RIG-I Caspa 32.0 85 0.0019 16.6 3.6 41 41-82 42-82 (84)
362 KOG4340 Uncharacterized conser 31.9 1.7E+02 0.0038 20.1 5.4 51 8-58 190-268 (459)
363 PF00356 LacI: Bacterial regul 31.6 64 0.0014 15.0 2.3 18 13-30 29-46 (46)
364 KOG1874 KEKE-like motif-contai 31.5 77 0.0017 25.6 3.5 39 28-67 254-292 (1477)
365 PF05261 Tra_M: TraM protein, 31.3 52 0.0011 19.1 2.1 43 5-47 6-48 (127)
366 cd08311 Death_p75NR Death doma 31.2 85 0.0018 16.4 4.1 19 63-81 55-73 (77)
367 PHA00439 exonuclease 31.0 43 0.00092 22.2 1.9 25 25-49 233-257 (286)
368 PF13646 HEAT_2: HEAT repeats; 30.7 79 0.0017 15.8 2.9 18 29-46 43-60 (88)
369 PF08542 Rep_fac_C: Replicatio 30.5 50 0.0011 17.1 1.9 35 9-44 17-51 (89)
370 PF11123 DNA_Packaging_2: DNA 30.4 92 0.002 16.5 3.2 31 13-44 14-44 (82)
371 PF07864 DUF1651: Protein of u 30.3 54 0.0012 16.8 1.9 20 11-30 51-70 (75)
372 PRK09462 fur ferric uptake reg 29.9 1.2E+02 0.0025 17.6 4.1 37 11-47 32-68 (148)
373 PRK02287 hypothetical protein; 29.7 1.4E+02 0.003 18.3 5.0 53 32-84 108-162 (171)
374 PF13627 LPAM_2: Prokaryotic l 29.6 40 0.00087 13.6 1.1 13 66-78 9-21 (24)
375 KOG2297 Predicted translation 29.4 33 0.00071 23.4 1.2 69 12-81 271-340 (412)
376 PF09543 DUF2379: Protein of u 29.0 1.2E+02 0.0026 17.5 3.8 48 12-59 53-102 (121)
377 TIGR02710 CRISPR-associated pr 28.5 2.1E+02 0.0045 19.9 6.1 53 6-58 140-198 (380)
378 cd01056 Euk_Ferritin eukaryoti 28.5 23 0.0005 20.8 0.4 22 12-33 51-72 (161)
379 PF14162 YozD: YozD-like prote 28.2 70 0.0015 15.6 1.9 19 14-32 13-31 (57)
380 KOG1538 Uncharacterized conser 28.1 1.4E+02 0.003 22.9 4.1 51 5-58 607-659 (1081)
381 COG0292 RplT Ribosomal protein 27.7 83 0.0018 18.0 2.4 45 26-71 68-112 (118)
382 PF03943 TAP_C: TAP C-terminal 27.6 7 0.00015 18.8 -1.6 20 11-30 28-48 (51)
383 PF07163 Pex26: Pex26 protein; 27.6 1.8E+02 0.0039 19.6 4.3 48 7-54 129-181 (309)
384 KOG4567 GTPase-activating prot 27.5 2.1E+02 0.0045 19.7 5.0 57 16-73 263-319 (370)
385 KOG0495 HAT repeat protein [RN 27.4 2.9E+02 0.0063 21.2 5.6 18 63-80 852-869 (913)
386 PHA02875 ankyrin repeat protei 27.4 1.4E+02 0.0029 20.1 3.9 18 38-55 39-56 (413)
387 TIGR02531 yecD_yerC TrpR-relat 27.3 86 0.0019 16.8 2.4 29 32-60 3-31 (88)
388 KOG1920 IkappaB kinase complex 27.1 1.4E+02 0.003 24.1 4.1 19 66-84 1003-1021(1265)
389 PF12169 DNA_pol3_gamma3: DNA 27.0 1.1E+02 0.0024 17.2 3.0 28 8-35 26-53 (143)
390 cd08304 DD_superfamily The Dea 26.9 97 0.0021 15.6 3.9 30 49-78 34-63 (69)
391 cd04406 RhoGAP_myosin_IXA RhoG 26.8 1.5E+02 0.0034 17.9 5.9 37 6-42 37-78 (186)
392 KOG1156 N-terminal acetyltrans 26.7 2.3E+02 0.0049 21.4 4.9 78 6-84 415-504 (700)
393 cd00280 TRFH Telomeric Repeat 26.2 1.8E+02 0.0038 18.3 6.6 46 12-57 85-137 (200)
394 KOG2041 WD40 repeat protein [G 26.1 49 0.0011 25.3 1.7 21 64-84 798-818 (1189)
395 PF04910 Tcf25: Transcriptiona 26.1 2.1E+02 0.0046 19.4 4.6 75 3-77 110-194 (360)
396 COG2987 HutU Urocanate hydrata 26.1 35 0.00075 24.4 0.9 47 10-56 239-290 (561)
397 COG0457 NrfG FOG: TPR repeat [ 26.0 1.3E+02 0.0028 16.7 5.9 79 6-84 140-224 (291)
398 cd04382 RhoGAP_MgcRacGAP RhoGA 25.9 1.7E+02 0.0036 18.0 5.6 38 6-43 39-81 (193)
399 COG0377 NuoB NADH:ubiquinone o 25.8 14 0.0003 22.9 -0.9 22 39-60 82-103 (194)
400 cd08325 CARD_CASP1-like Caspas 25.8 95 0.0021 16.3 2.4 59 15-77 18-77 (83)
401 PF11459 DUF2893: Protein of u 25.2 72 0.0016 16.5 1.8 13 46-58 19-31 (69)
402 PRK07143 hypothetical protein; 24.9 76 0.0016 20.8 2.3 44 42-85 122-171 (279)
403 KOG1498 26S proteasome regulat 24.6 1.3E+02 0.0029 21.2 3.4 31 34-67 134-164 (439)
404 KOG1687 NADH-ubiquinone oxidor 24.5 42 0.0009 19.9 0.9 13 48-60 87-99 (168)
405 cd01670 Death Death Domain: a 24.5 1.1E+02 0.0023 15.3 4.2 21 62-82 55-75 (79)
406 KOG1130 Predicted G-alpha GTPa 24.5 1.2E+02 0.0026 21.8 3.2 49 6-55 27-79 (639)
407 cd04389 RhoGAP_KIAA1688 RhoGAP 24.4 1.7E+02 0.0038 17.7 6.1 64 8-71 46-131 (187)
408 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 24.3 1.8E+02 0.0039 17.8 5.3 35 8-42 40-81 (196)
409 COG3046 Uncharacterized protei 24.2 1.8E+02 0.004 20.8 4.0 17 31-47 257-273 (505)
410 PRK11906 transcriptional regul 24.1 2.8E+02 0.006 19.9 6.0 71 12-83 320-393 (458)
411 PRK14962 DNA polymerase III su 23.9 1.7E+02 0.0037 20.7 4.0 38 8-45 255-292 (472)
412 cd04379 RhoGAP_SYD1 RhoGAP_SYD 23.8 1.9E+02 0.0042 17.9 5.6 54 7-72 41-104 (207)
413 COG3294 HD supefamily hydrolas 23.7 60 0.0013 21.1 1.6 20 13-32 67-86 (269)
414 TIGR02370 pyl_corrinoid methyl 23.4 88 0.0019 19.2 2.2 41 8-48 7-47 (197)
415 cd01671 CARD Caspase activatio 23.3 1.1E+02 0.0023 15.4 2.3 62 14-79 14-75 (80)
416 COG4397 Mu-like prophage major 22.8 1.4E+02 0.003 19.4 3.0 27 17-43 101-128 (308)
417 PF12554 MOZART1: Mitotic-spin 22.7 1.1E+02 0.0023 14.6 2.4 22 9-30 17-38 (48)
418 cd04395 RhoGAP_ARHGAP21 RhoGAP 22.6 1.9E+02 0.0042 17.5 5.5 35 7-41 41-83 (196)
419 PF10155 DUF2363: Uncharacteri 22.6 1.7E+02 0.0036 16.9 5.0 47 11-57 78-124 (126)
420 KOG2096 WD40 repeat protein [G 22.5 10 0.00022 25.8 -2.1 32 23-57 244-275 (420)
421 cd01055 Nonheme_Ferritin nonhe 22.5 44 0.00095 19.3 0.8 19 12-30 49-67 (156)
422 PF08461 HTH_12: Ribonuclease 22.5 1.2E+02 0.0026 15.2 3.5 45 2-46 3-47 (66)
423 KOG2041 WD40 repeat protein [G 22.3 1.7E+02 0.0037 22.6 3.8 53 26-83 847-899 (1189)
424 PF04090 RNA_pol_I_TF: RNA pol 22.2 79 0.0017 19.8 1.9 24 62-85 41-64 (199)
425 PF12968 DUF3856: Domain of Un 22.2 1.8E+02 0.0039 17.1 3.6 35 48-82 33-75 (144)
426 KOG2300 Uncharacterized conser 22.2 3E+02 0.0065 20.3 4.8 77 8-84 379-467 (629)
427 PF07218 RAP1: Rhoptry-associa 22.1 2.1E+02 0.0045 21.4 4.0 12 60-71 618-629 (782)
428 cd00904 Ferritin Ferritin iron 21.9 56 0.0012 19.3 1.1 21 12-32 51-71 (160)
429 PF14475 Mso1_Sec1_bdg: Sec1-b 21.9 1E+02 0.0023 14.2 2.1 18 29-46 18-35 (41)
430 cd04890 ACT_AK-like_1 ACT doma 21.9 90 0.002 14.7 1.8 26 8-33 10-35 (62)
431 PF00627 UBA: UBA/TS-N domain; 21.7 90 0.0019 13.4 4.4 32 17-53 4-36 (37)
432 PF05089 NAGLU: Alpha-N-acetyl 21.6 72 0.0016 21.7 1.7 20 11-30 93-112 (333)
433 cd08317 Death_ank Death domain 21.5 1.4E+02 0.003 15.5 4.4 18 63-80 62-79 (84)
434 cd04935 ACT_AKiii-DAPDC_1 ACT 21.4 1E+02 0.0022 15.7 2.0 27 7-33 10-36 (75)
435 cd04383 RhoGAP_srGAP RhoGAP_sr 21.3 2.1E+02 0.0044 17.4 6.0 36 7-42 41-83 (188)
436 PF09454 Vps23_core: Vps23 cor 21.2 29 0.00062 17.6 -0.2 29 29-57 6-34 (65)
437 PF08163 NUC194: NUC194 domain 21.0 1.4E+02 0.0029 20.8 2.9 40 31-70 130-171 (394)
438 cd04934 ACT_AK-Hom3_1 CT domai 20.8 1E+02 0.0022 15.6 1.9 29 5-33 8-36 (73)
439 smart00005 DEATH DEATH domain, 20.7 1.4E+02 0.003 15.2 5.0 20 63-82 64-83 (88)
440 PHA01782 hypothetical protein 20.7 2.2E+02 0.0047 17.5 5.9 58 19-78 22-82 (177)
441 COG2971 Predicted N-acetylgluc 20.6 2.8E+02 0.0061 18.7 5.9 69 14-85 157-229 (301)
442 cd02064 FAD_synthetase_N FAD s 20.5 1.1E+02 0.0023 18.4 2.2 24 62-85 144-167 (180)
443 PRK13713 conjugal transfer pro 20.5 1.8E+02 0.0039 16.7 2.9 34 12-45 6-39 (118)
444 PF05917 DUF874: Helicobacter 20.3 2.4E+02 0.0053 19.1 3.8 50 35-84 67-129 (398)
445 PF11838 ERAP1_C: ERAP1-like C 20.2 2.5E+02 0.0055 18.0 5.4 71 10-80 144-219 (324)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.89 E-value=2.2e-23 Score=145.25 Aligned_cols=86 Identities=20% Similarity=0.397 Sum_probs=83.0
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhH
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~ 80 (86)
++|++|++.|.+++|+++|++|.+.|+.||..++|+||++|+++|++++|.++|++|.+||++|||+||.+|++.|+.++
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC
Q 043594 81 CYTFIV 86 (86)
Q Consensus 81 a~~~f~ 86 (86)
|+++|+
T Consensus 410 A~~lf~ 415 (697)
T PLN03081 410 AVEMFE 415 (697)
T ss_pred HHHHHH
Confidence 999884
No 2
>PLN03077 Protein ECB2; Provisional
Probab=99.85 E-value=1.3e-21 Score=138.80 Aligned_cols=86 Identities=26% Similarity=0.404 Sum_probs=82.2
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhH
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~ 80 (86)
++|++|++.|+++.|.++|.+|.+.|+.||..+||+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC
Q 043594 81 CYTFIV 86 (86)
Q Consensus 81 a~~~f~ 86 (86)
|+++|+
T Consensus 373 A~~lf~ 378 (857)
T PLN03077 373 ALETYA 378 (857)
T ss_pred HHHHHH
Confidence 999874
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.85 E-value=2.7e-21 Score=134.87 Aligned_cols=86 Identities=26% Similarity=0.455 Sum_probs=83.2
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhH
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~ 80 (86)
++|.+|++.++++.+.++|..|.+.|+.||..+||+||++|+++|++++|.++|++|++||+++||+||++|++.|++++
T Consensus 128 ~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~ 207 (697)
T PLN03081 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE 207 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC
Q 043594 81 CYTFIV 86 (86)
Q Consensus 81 a~~~f~ 86 (86)
|+++|+
T Consensus 208 A~~lf~ 213 (697)
T PLN03081 208 AFALFR 213 (697)
T ss_pred HHHHHH
Confidence 999884
No 4
>PLN03077 Protein ECB2; Provisional
Probab=99.84 E-value=6e-21 Score=135.45 Aligned_cols=86 Identities=26% Similarity=0.467 Sum_probs=82.2
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhH
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~ 80 (86)
++|.+|++.|++++|.++|+.|.+.|+.|+..++|+||++|+++|++++|.++|++|.+||+++||+||.+|+++|+.++
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC
Q 043594 81 CYTFIV 86 (86)
Q Consensus 81 a~~~f~ 86 (86)
|+++|+
T Consensus 474 A~~lf~ 479 (857)
T PLN03077 474 ALIFFR 479 (857)
T ss_pred HHHHHH
Confidence 999884
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.82 E-value=1.7e-20 Score=135.43 Aligned_cols=84 Identities=25% Similarity=0.418 Sum_probs=63.3
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC----CCChhhHHHHHHHHhhcCC
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP----VRNVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~t~~~li~~~~~~g~ 77 (86)
+|++|++.|++++|.++|++|.+.|+.||..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 567777777777777777777777777777777777777777777777777777775 4677777777777777777
Q ss_pred hhHhhhcc
Q 043594 78 VDMCYTFI 85 (86)
Q Consensus 78 ~~~a~~~f 85 (86)
+++|+++|
T Consensus 523 ~eeAl~lf 530 (1060)
T PLN03218 523 VAKAFGAY 530 (1060)
T ss_pred HHHHHHHH
Confidence 77777665
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.81 E-value=4.2e-20 Score=133.40 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=69.8
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC----CCChhhHHHHHHHHhhcCC
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP----VRNVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~t~~~li~~~~~~g~ 77 (86)
+|++|++.|++++|.++|++|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 677788888888888888888888888888888888888888888888888888884 5788888888888888888
Q ss_pred hhHhhhccC
Q 043594 78 VDMCYTFIV 86 (86)
Q Consensus 78 ~~~a~~~f~ 86 (86)
+++|.++|+
T Consensus 735 ~eeAlelf~ 743 (1060)
T PLN03218 735 LPKALEVLS 743 (1060)
T ss_pred HHHHHHHHH
Confidence 888887763
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.70 E-value=1.2e-17 Score=81.70 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHhhcCCC----CCChhhHHHHHHHHhh
Q 043594 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMP----VRNVVSWTAIIAAFAQ 74 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~t~~~li~~~~~ 74 (86)
||..+||++|++|++.|++++|.++|++|. .||..|||+||++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999996 5999999999999986
No 8
>PF12854 PPR_1: PPR repeat
Probab=99.55 E-value=5.1e-15 Score=67.05 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=32.2
Q ss_pred HcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 25 SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 25 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999995
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.51 E-value=1.7e-14 Score=70.44 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=41.3
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK 43 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~ 43 (86)
++|++|++.|++++|.++|++|.+.|++||..||++||++|+|
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999999986
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.24 E-value=6.6e-12 Score=56.72 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=27.0
Q ss_pred CCCChhhHHHHHHHHhhcCChhHhhhccC
Q 043594 58 PVRNVVSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 58 ~~~~~~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
..||++|||+||++|++.|++++|.++|+
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 36999999999999999999999999984
No 11
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.74 E-value=4.6e-09 Score=45.71 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCCCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRN 61 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 61 (86)
++||++|++|++.|++++|.++|++|++.+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 478999999999999999999999887643
No 12
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.54 E-value=4.5e-08 Score=43.34 Aligned_cols=31 Identities=6% Similarity=0.060 Sum_probs=27.6
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHHcCCchH
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANV 31 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 31 (86)
++|++|++.|++++|.++|.+|.+.|+.||.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 4788999999999999999999999999873
No 13
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.53 E-value=4.2e-08 Score=43.43 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
.+||++|++|++.|++++|.++|++|.+
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999864
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.50 E-value=3.8e-07 Score=59.85 Aligned_cols=80 Identities=5% Similarity=-0.041 Sum_probs=39.0
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+.+.|++++|.+++.++.+.+-.....+++.+...|.+.|++++|...++++. .|+...++.+...+.+.|++++|.+
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHH
Confidence 34455555555555555443221223344555555555555555555555443 2444444555555555555555554
Q ss_pred cc
Q 043594 84 FI 85 (86)
Q Consensus 84 ~f 85 (86)
+|
T Consensus 304 ~l 305 (389)
T PRK11788 304 LL 305 (389)
T ss_pred HH
Confidence 43
No 15
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.50 E-value=5.9e-08 Score=42.07 Aligned_cols=24 Identities=8% Similarity=0.296 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhhcCChhHhhhccC
Q 043594 63 VSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 63 ~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
+|||+||++|++.|++++|.++|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFD 24 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHH
Confidence 589999999999999999999874
No 16
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.41 E-value=1e-07 Score=42.21 Aligned_cols=30 Identities=20% Similarity=0.435 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCCCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRN 61 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 61 (86)
.+||++|++|++.|+++.|.++|++|.+.+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 588999999999999999999999887533
No 17
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.40 E-value=2.6e-07 Score=40.83 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=27.3
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHHcCCc
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVA 29 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 29 (86)
++|.+|++.|+++.|.+++++|.+.|++|
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 37899999999999999999999999987
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.38 E-value=1.1e-06 Score=57.73 Aligned_cols=81 Identities=5% Similarity=0.016 Sum_probs=69.2
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhh---cCC
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQ---EWE 77 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~---~g~ 77 (86)
..++.+.|++++|.+.+..+.+. .|+..++..+...|.+.|++++|..+|+++. .|+..+++.++..+.. .|+
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCcc
Confidence 46778899999999999999886 4777777999999999999999999999875 4899999999988775 557
Q ss_pred hhHhhhcc
Q 043594 78 VDMCYTFI 85 (86)
Q Consensus 78 ~~~a~~~f 85 (86)
.++++.+|
T Consensus 334 ~~~a~~~~ 341 (389)
T PRK11788 334 AKESLLLL 341 (389)
T ss_pred chhHHHHH
Confidence 88887765
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=6.5e-06 Score=55.96 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=59.5
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHh----hcCCC----CCChhhHHHHHHHHhhcCChhHh
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM----FEKMP----VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~----~~~m~----~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+..++++..+|....+.||..|+|+++++..+.|+++.|+.- +-+|+ +|...+|.-+|.-+.|.++..+.
T Consensus 253 S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 253 SYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 3455688999999999999999999999999999998887764 44554 68999999999999999887553
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.3e-05 Score=53.42 Aligned_cols=79 Identities=9% Similarity=-0.030 Sum_probs=63.7
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC----CCChhhHHHHHHHHhhcCC
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP----VRNVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~t~~~li~~~~~~g~ 77 (86)
||.+.|+-...+.|.+++.+-.....+.+..++|.+|.+-+-.-. .++..+|. .||+.|+|++++...+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 678888888888999999988888888888999998865443222 56677775 4999999999999999999
Q ss_pred hhHhhhc
Q 043594 78 VDMCYTF 84 (86)
Q Consensus 78 ~~~a~~~ 84 (86)
++.|..-
T Consensus 289 F~~ar~a 295 (625)
T KOG4422|consen 289 FEDARKA 295 (625)
T ss_pred hHHHHHH
Confidence 9887653
No 21
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.87 E-value=3e-05 Score=56.32 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC----------------------------CCChhhHHHH
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP----------------------------VRNVVSWTAI 68 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----------------------------~~~~~t~~~l 68 (86)
..+..+...|+.|+-+||..+|.-||..|+++.|- +|.-|+ +|-.-||+.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 46788999999999999999999999999999998 777662 2456689999
Q ss_pred HHHHhhcCChhH
Q 043594 69 IAAFAQEWEVDM 80 (86)
Q Consensus 69 i~~~~~~g~~~~ 80 (86)
..+|.++||+..
T Consensus 90 l~ayr~hGDli~ 101 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHhccchHH
Confidence 999999999864
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.82 E-value=7.5e-05 Score=52.66 Aligned_cols=78 Identities=10% Similarity=-0.046 Sum_probs=38.2
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+.+.|++++|.+++..+.+.. +.+..+|..+...|.+.|++++|...|+++.+ | +...|..+...|.+.|++++|.
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555555554322 33444555555555555555555555554421 2 3344445555555555555554
Q ss_pred hc
Q 043594 83 TF 84 (86)
Q Consensus 83 ~~ 84 (86)
+.
T Consensus 656 ~~ 657 (899)
T TIGR02917 656 TS 657 (899)
T ss_pred HH
Confidence 44
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.81 E-value=8.3e-05 Score=52.43 Aligned_cols=19 Identities=0% Similarity=-0.109 Sum_probs=7.3
Q ss_pred HHHHHHhcCChHHHHHhhc
Q 043594 37 LISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 37 li~~y~~~g~~~~A~~~~~ 55 (86)
+...|.+.|++++|.+.|+
T Consensus 709 ~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333
No 24
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.78 E-value=8.8e-05 Score=50.43 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=35.7
Q ss_pred cCCchhHHHHHHHHHHHH--cCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC----CChhhHHHHHHHHhhcCChhHh
Q 043594 8 STRNIRGGTQYQCLAVRS--GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV----RNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~t~~~li~~~~~~g~~~~a 81 (86)
...++++++.+.-..... ....-+.|..++|.-|.+.|..+++..+++.=.. ||.+|+|.||+.+.+.|++..|
T Consensus 78 ~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A 157 (429)
T PF10037_consen 78 SKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSA 157 (429)
T ss_pred CHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHH
Confidence 333444444444333332 2222233444555555555555555555544321 4555555555555555555555
Q ss_pred hhc
Q 043594 82 YTF 84 (86)
Q Consensus 82 ~~~ 84 (86)
.++
T Consensus 158 ~~V 160 (429)
T PF10037_consen 158 AKV 160 (429)
T ss_pred HHH
Confidence 443
No 25
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.78 E-value=0.00022 Score=35.89 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=49.6
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CChhhHHHHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RNVVSWTAIIA 70 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~t~~~li~ 70 (86)
+.|++++|.+++..+.+.. +-+..++-.+...|.+.|++++|..++++... |+...|..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 5789999999999998874 23666777899999999999999999999874 77666666553
No 26
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.73 E-value=7.8e-05 Score=46.54 Aligned_cols=72 Identities=10% Similarity=-0.010 Sum_probs=61.6
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC----------------ChHHHHHhhcCCCC----CChhhHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG----------------ENIDVYKMFEKMPV----RNVVSWTA 67 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g----------------~~~~A~~~~~~m~~----~~~~t~~~ 67 (86)
+.|.++=...-+..|.+.|++-|..+|+.||+.+-+.. +-+-|.+++++|+. ||..|+..
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ 143 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQM 143 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45778888888999999999999999999999998732 23778889999974 99999999
Q ss_pred HHHHHhhcCChh
Q 043594 68 IIAAFAQEWEVD 79 (86)
Q Consensus 68 li~~~~~~g~~~ 79 (86)
|+..|++.+..-
T Consensus 144 ll~iFG~~s~p~ 155 (228)
T PF06239_consen 144 LLNIFGRKSHPM 155 (228)
T ss_pred HHHHhccccHHH
Confidence 999999988653
No 27
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=0.00013 Score=38.47 Aligned_cols=77 Identities=9% Similarity=-0.016 Sum_probs=57.3
Q ss_pred CCchhHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhcCChHHHHHhhcCCC-CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 9 TRNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMP-VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.|++++|..+++.+.+..- .++...+-.+-.+|.+.|++++|..++++.. .| +....-.+-..|.+.|+.++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5789999999999988764 2355555558899999999999999998832 12 3233334457799999999999876
No 28
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.67 E-value=0.00015 Score=41.04 Aligned_cols=73 Identities=10% Similarity=0.166 Sum_probs=59.5
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhcC--------ChHHHHHhhcCCC----CCChhhHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCG--------ENIDVYKMFEKMP----VRNVVSWTAII 69 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~y~~~g--------~~~~A~~~~~~m~----~~~~~t~~~li 69 (86)
|..|...+++..-.-+|..+++.|+ -|+..+|+.++.+-++-. ++-+...+|+.|. .|+..|||.+|
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4456667999999999999999999 999999999999988742 3445566777664 69999999999
Q ss_pred HHHhhc
Q 043594 70 AAFAQE 75 (86)
Q Consensus 70 ~~~~~~ 75 (86)
....+.
T Consensus 112 ~~Llkg 117 (120)
T PF08579_consen 112 GSLLKG 117 (120)
T ss_pred HHHHHh
Confidence 887654
No 29
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.65 E-value=0.00027 Score=40.04 Aligned_cols=80 Identities=8% Similarity=-0.047 Sum_probs=66.1
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|+.++|.+.+......+ ..+...+..+-..|.+.|++++|...|++.. ..+..+|..+-..|...|+.++|
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHH
Confidence 4556799999999999988865 4477788888899999999999999999764 23566777777899999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 105 ~~~~ 108 (135)
T TIGR02552 105 LKAL 108 (135)
T ss_pred HHHH
Confidence 8776
No 30
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.00012 Score=49.85 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=64.0
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC----CChhhHHHHHHHHhhc
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV----RNVVSWTAIIAAFAQE 75 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~t~~~li~~~~~~ 75 (86)
++.-|-+.|..+++..+...=...|+-||.+++|.||+.+.+.|++..|.++..+|.. .+..|+.--+.+|.+.
T Consensus 109 ~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 109 LVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 5677888899999999999999999999999999999999999999999999998852 3556777777777666
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.57 E-value=0.00032 Score=40.85 Aligned_cols=80 Identities=5% Similarity=-0.149 Sum_probs=66.4
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a 81 (86)
++...|++++|...+....... ..+...+..+-..+.+.|++++|...|++... | +..+|..+-..+.+.|+.++|
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 3456799999999999987754 33677888888899999999999999998753 4 677888888999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 112 i~~~ 115 (144)
T PRK15359 112 REAF 115 (144)
T ss_pred HHHH
Confidence 8876
No 32
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.00022 Score=36.33 Aligned_cols=80 Identities=13% Similarity=0.008 Sum_probs=64.1
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|.+.+....+.. +.+..++..+-..|...|++++|.+.|++.. ..+..+|..+...+...|+.++|
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence 3456789999999999987764 2344677888889999999999999998754 23556888888999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 88 ~~~~ 91 (100)
T cd00189 88 LEAY 91 (100)
T ss_pred HHHH
Confidence 8765
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.56 E-value=0.00051 Score=41.12 Aligned_cols=78 Identities=9% Similarity=-0.016 Sum_probs=40.1
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
...|++++|.+.+.+..+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+-..|...|++++|.+
T Consensus 42 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 42 LEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 34555666666666555432 22344555555555566666666665554321 233444455555555555555554
Q ss_pred cc
Q 043594 84 FI 85 (86)
Q Consensus 84 ~f 85 (86)
.|
T Consensus 121 ~~ 122 (234)
T TIGR02521 121 QF 122 (234)
T ss_pred HH
Confidence 43
No 34
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.52 E-value=0.0015 Score=37.92 Aligned_cols=83 Identities=6% Similarity=-0.008 Sum_probs=60.7
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchH--HHHHHHHHHHHhcCChHHHHHhhcCCCCCC--hhhHHHHHHHHhhcCChh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANV--YVGSSLISFCGKCGENIDVYKMFEKMPVRN--VVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~t~~~li~~~~~~g~~~ 79 (86)
..+...|++++|...+.......-.|+. ...-.|-..+...|++++|...++..+.+. ...+...=+.|.+.|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 3455679999999999999987733322 233345677788999999999998865432 334444557799999999
Q ss_pred HhhhccC
Q 043594 80 MCYTFIV 86 (86)
Q Consensus 80 ~a~~~f~ 86 (86)
+|...|+
T Consensus 136 ~A~~~y~ 142 (145)
T PF09976_consen 136 EARAAYQ 142 (145)
T ss_pred HHHHHHH
Confidence 9998763
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.21 E-value=0.00042 Score=44.05 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=29.6
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
..|+.+++.+++....+.. +.|+..+..+-.+|...|+.++|...|++.. .| |..+...+-+.+.+.|+.++|.++
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3444444444544444433 3344444555555555555555555555432 13 344444455555555555555544
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.20 E-value=0.002 Score=38.50 Aligned_cols=47 Identities=9% Similarity=-0.094 Sum_probs=19.3
Q ss_pred HHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 37 LISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 37 li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+-..|.+.|++++|...|++... | +...|..+...+.+.|+.++|.+
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 33344444444444444443221 1 22334444444444444444443
No 37
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.10 E-value=0.0036 Score=34.20 Aligned_cols=81 Identities=7% Similarity=-0.140 Sum_probs=62.6
Q ss_pred chhcCCchhHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC----hhhHHHHHHHHhhcC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGF--VANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN----VVSWTAIIAAFAQEW 76 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~----~~t~~~li~~~~~~g 76 (86)
.+.+.|+.++|.+.+..+.+..= ......+-.+-..|.+.|+++.|...|++.. .|+ ..++..+-..+.+.|
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 90 (119)
T TIGR02795 11 LVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELG 90 (119)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhC
Confidence 45578999999999999987531 1123455668889999999999999999875 244 345777778899999
Q ss_pred ChhHhhhcc
Q 043594 77 EVDMCYTFI 85 (86)
Q Consensus 77 ~~~~a~~~f 85 (86)
+.++|.+.|
T Consensus 91 ~~~~A~~~~ 99 (119)
T TIGR02795 91 DKEKAKATL 99 (119)
T ss_pred ChHHHHHHH
Confidence 999998765
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.09 E-value=0.0014 Score=41.68 Aligned_cols=81 Identities=6% Similarity=-0.096 Sum_probs=50.0
Q ss_pred cchhcCCchhHHHHHHHHHHHH-cCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRS-GFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~ 79 (86)
..+.+.++++++.++++.+... ..+.++..|..+-..|-+.|+.++|.+.+++.. .| |....+.++..+...|+.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 3445667777777777776543 245566777777777777788888877777664 35 3556677777777777776
Q ss_pred Hhhhc
Q 043594 80 MCYTF 84 (86)
Q Consensus 80 ~a~~~ 84 (86)
++.++
T Consensus 198 ~~~~~ 202 (280)
T PF13429_consen 198 EAREA 202 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 39
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.05 E-value=0.0016 Score=42.22 Aligned_cols=81 Identities=6% Similarity=-0.006 Sum_probs=53.3
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHH---HHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcC
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYV---GSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEW 76 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g 76 (86)
+..+.+.++++.|.+.++.|.+.. .|..+ ..+.|+.+.-...+.+|.-+|+++.+ +++.+.|.+...+...|
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 355667888888888888887643 34332 23333433334578888888888764 46677778888888888
Q ss_pred ChhHhhhcc
Q 043594 77 EVDMCYTFI 85 (86)
Q Consensus 77 ~~~~a~~~f 85 (86)
++++|.+++
T Consensus 216 ~~~eAe~~L 224 (290)
T PF04733_consen 216 HYEEAEELL 224 (290)
T ss_dssp -HHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888887654
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.01 E-value=0.0039 Score=40.33 Aligned_cols=79 Identities=9% Similarity=-0.095 Sum_probs=60.5
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+...|+.++|...+.+..+.. ..++..|+.+=..|...|++++|.+.|++.. .| +..+|..+-..+...|+.++|+
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446688888888888877753 2346688888888889999999999888764 35 4567777777888888888888
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 153 ~~~ 155 (296)
T PRK11189 153 DDL 155 (296)
T ss_pred HHH
Confidence 765
No 41
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.00 E-value=0.0028 Score=36.43 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=11.5
Q ss_pred ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 61 NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 61 ~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
+..+-.+++.+|+.+|++..|+++
T Consensus 51 t~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 51 TSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred CHHHHHHHHHHHHhcccHHHHHHH
Confidence 344444455555555555544443
No 42
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.96 E-value=0.0013 Score=37.87 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=55.5
Q ss_pred hhcchhcCCchhHHHHHHHHH---------------HHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----CC
Q 043594 2 PVTSCGSTRNIRGGTQYQCLA---------------VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-----RN 61 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m---------------~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~ 61 (86)
+|-++++.|+++..+.+.+.. ..+.+.|+..+..+++.+|+..|++..|.++.+.... -+
T Consensus 8 ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~ 87 (126)
T PF12921_consen 8 IIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIP 87 (126)
T ss_pred HHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCC
Confidence 577889999999888877654 1124678999999999999999999999999997653 13
Q ss_pred hhhHHHHHHH
Q 043594 62 VVSWTAIIAA 71 (86)
Q Consensus 62 ~~t~~~li~~ 71 (86)
-.+|..|+.=
T Consensus 88 ~~~W~~Ll~W 97 (126)
T PF12921_consen 88 KEFWRRLLEW 97 (126)
T ss_pred HHHHHHHHHH
Confidence 5678887743
No 43
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.95 E-value=0.0043 Score=41.28 Aligned_cols=79 Identities=9% Similarity=-0.124 Sum_probs=65.3
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
....|++++|.+++.+.++.. .-+...+..+-.+|.+.|++++|...+++... | +...|..+-.+|.+.|++++|.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 346789999999999998864 23566777888899999999999999998753 4 5677888888999999999999
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 91 ~~~ 93 (356)
T PLN03088 91 AAL 93 (356)
T ss_pred HHH
Confidence 876
No 44
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.84 E-value=0.0024 Score=36.75 Aligned_cols=83 Identities=7% Similarity=0.013 Sum_probs=62.4
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCC----------ChhhHHHHHHH
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR----------NVVSWTAIIAA 71 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----------~~~t~~~li~~ 71 (86)
+++.+.+.+.+....+.++.+.+.+-..+....+.++..|++.++.++..++++....- ..--|...+--
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~L 92 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYL 92 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHH
Confidence 56778888899999999999998887788999999999999999999999999965431 12234555556
Q ss_pred HhhcCChhHhhhc
Q 043594 72 FAQEWEVDMCYTF 84 (86)
Q Consensus 72 ~~~~g~~~~a~~~ 84 (86)
|.+.|+.++|+++
T Consensus 93 y~~~~~~~~al~i 105 (143)
T PF00637_consen 93 YSKLGNHDEALEI 105 (143)
T ss_dssp HHCCTTHTTCSST
T ss_pred HHHcccHHHHHHH
Confidence 6666666666653
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.84 E-value=0.0081 Score=36.84 Aligned_cols=80 Identities=9% Similarity=-0.010 Sum_probs=63.4
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHH-HHhcCC--hHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISF-CGKCGE--NIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-y~~~g~--~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~ 78 (86)
.+...|++++|.+.++...+.. ..|..++..+-.. |...|+ .++|.+++++..+ | |..++..+-..+.+.|++
T Consensus 82 ~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 82 YYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 4567899999999999888865 2356667776665 467777 5999999998753 4 677888888999999999
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|...|
T Consensus 161 ~~Ai~~~ 167 (198)
T PRK10370 161 AQAIELW 167 (198)
T ss_pred HHHHHHH
Confidence 9999876
No 46
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.82 E-value=0.0099 Score=38.68 Aligned_cols=80 Identities=5% Similarity=0.034 Sum_probs=63.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----CCh--hhHHHHHHHHhhcCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-----RNV--VSWTAIIAAFAQEWE 77 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~--~t~~~li~~~~~~g~ 77 (86)
.+...|++++|.+.+....+.. +.+...+..+-..|...|++++|...+++... |+. ..|-.+-..+...|+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 3456789999999999998865 34466778888899999999999999987643 232 345577888999999
Q ss_pred hhHhhhcc
Q 043594 78 VDMCYTFI 85 (86)
Q Consensus 78 ~~~a~~~f 85 (86)
.++|.++|
T Consensus 202 ~~~A~~~~ 209 (355)
T cd05804 202 YEAALAIY 209 (355)
T ss_pred HHHHHHHH
Confidence 99998876
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.008 Score=41.91 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=64.2
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC--CCCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM--PVRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..|++..|.|+|.+... .+||...|.+.|+.=.+-..++.|+.+++.. .+|++.+|---..-=-++|.+..|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 35888999999998765 6899999999999999999999999999985 4799999887777777888887777665
No 48
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.69 E-value=0.009 Score=42.12 Aligned_cols=74 Identities=9% Similarity=-0.098 Sum_probs=30.2
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
.|++++|.+.+....+.. ..++.++..+-..|...|++++|...|++.. .| +...|..+-..+.+.|+.++|+.
T Consensus 378 ~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344444444444443331 1123344444444444444444444444332 12 23333333344444444444443
No 49
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.67 E-value=0.011 Score=40.14 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=35.0
Q ss_pred HHHHHHhcCChHHHHHhhcCCC--CCC-hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 37 LISFCGKCGENIDVYKMFEKMP--VRN-VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 37 li~~y~~~g~~~~A~~~~~~m~--~~~-~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
-...+.+.++.+.|..+.++.. .|+ ..+|..|...|.+.|++++|+..+
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3344555566666666666554 364 469999999999999999998654
No 50
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.64 E-value=0.011 Score=42.30 Aligned_cols=75 Identities=9% Similarity=-0.105 Sum_probs=36.7
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
..|+.++|.+.+..+.+.. +.+...+..+-..|.+.|++++|.+.|++... | +...|..+...+.+.|+.++|..
T Consensus 88 ~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHH
Confidence 3455555555555555432 11233444444555555555555555554432 2 33445555555555555555544
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.63 E-value=0.0097 Score=41.96 Aligned_cols=80 Identities=6% Similarity=-0.112 Sum_probs=65.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|...+....+.. +.+...+..+-..|.+.|++++|...|++.. .| +...|+.+-..+...|++++|
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 3556799999999999988764 2346677778888999999999999999864 34 467888889999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 487 ~~~~ 490 (615)
T TIGR00990 487 IEKF 490 (615)
T ss_pred HHHH
Confidence 8766
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.59 E-value=0.016 Score=39.02 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=58.4
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhhc
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
...++.+++.+..+...+.. +-|+...-++=..+.+.|++++|++.|+... .|+..+|..|-..+-+.|+.++|.+.
T Consensus 305 l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred ccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34577777777777776543 2344456677788888888999999888775 48888888888888899998888776
Q ss_pred c
Q 043594 85 I 85 (86)
Q Consensus 85 f 85 (86)
+
T Consensus 384 ~ 384 (398)
T PRK10747 384 R 384 (398)
T ss_pred H
Confidence 5
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=96.59 E-value=0.01 Score=41.55 Aligned_cols=47 Identities=6% Similarity=-0.178 Sum_probs=18.5
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
.|++++|.+.+++..+.+ +.+...+..+-..|...|++++|...+++
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444444444332 11222333333344444444444444443
No 54
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.57 E-value=0.0014 Score=32.91 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=36.8
Q ss_pred HhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 42 GKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 42 ~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.+.|++++|.+.|++.. .| |...+-.+...|.+.|++++|.+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 48 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELL 48 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46799999999999875 35 6777888999999999999999876
No 55
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.53 E-value=0.0061 Score=30.30 Aligned_cols=53 Identities=9% Similarity=-0.071 Sum_probs=38.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+.+.|++++|..++...++.. .-+...+..+-..+...|++++|...|++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456788888888888887765 3366677777788888888888888887653
No 56
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.52 E-value=0.012 Score=42.13 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=35.0
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHH----HHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID----VYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~ 80 (86)
+.|+.++|.+.+....+.. ..+...+..+-..|...|++++ |...|++.. .| +...+..+-..+.+.|++++
T Consensus 224 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 224 AVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4455555555555554432 2233344444455555555543 444444432 12 23344455555555555555
Q ss_pred hhhc
Q 043594 81 CYTF 84 (86)
Q Consensus 81 a~~~ 84 (86)
|...
T Consensus 303 A~~~ 306 (656)
T PRK15174 303 AIPL 306 (656)
T ss_pred HHHH
Confidence 5443
No 57
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.51 E-value=0.0024 Score=41.09 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=41.0
Q ss_pred cCCchhHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhhh
Q 043594 8 STRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+.+.++.|.++|.+..+.+ +..++++..+++..++ .++.+.|..+|+.... .+...|..-|+-+.+.|+.+.|..
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~ 91 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARA 91 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHH
Confidence 3444666666666665543 4455555555555332 2444456666665432 345556666666666666666665
Q ss_pred cc
Q 043594 84 FI 85 (86)
Q Consensus 84 ~f 85 (86)
+|
T Consensus 92 lf 93 (280)
T PF05843_consen 92 LF 93 (280)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 58
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.51 E-value=0.018 Score=43.59 Aligned_cols=79 Identities=10% Similarity=0.025 Sum_probs=46.8
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+.+.|+.++|.+.+....+.. +.++..+..+...|...|+.++|.+.++...+ | +..++..+-..+.+.|+.++|.
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH
Confidence 345566666666666666542 22445666666666666777777766665542 2 3344455555666666666666
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
++|
T Consensus 692 ~~~ 694 (1157)
T PRK11447 692 RTF 694 (1157)
T ss_pred HHH
Confidence 554
No 59
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.43 E-value=0.015 Score=43.50 Aligned_cols=73 Identities=4% Similarity=-0.156 Sum_probs=37.5
Q ss_pred CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
|+.++|...+.+..+.. |+...+..+-..+.+.|+.++|...|++.. .| +...++.+-..+...|+.++|++.
T Consensus 590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55555555555554432 444455555555555666666666555443 13 233444444455555555555444
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=96.37 E-value=0.02 Score=40.06 Aligned_cols=79 Identities=4% Similarity=-0.024 Sum_probs=53.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhcCChHHHHHhhcCCC---CCC-hhhHHHHHHHHhhcCChh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVY-VGSSLISFCGKCGENIDVYKMFEKMP---VRN-VVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~---~~~-~~t~~~li~~~~~~g~~~ 79 (86)
.+...|+.++|.+.+.+..+.. |+.. .+..+...+...|++++|...+++.. .|+ ...+..+-..+...|+.+
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 3556788888988888887754 4322 23334445666788888988887753 243 334566667788889988
Q ss_pred Hhhhcc
Q 043594 80 MCYTFI 85 (86)
Q Consensus 80 ~a~~~f 85 (86)
+|.+.+
T Consensus 459 eA~~~~ 464 (553)
T PRK12370 459 LARKLT 464 (553)
T ss_pred HHHHHH
Confidence 888765
No 61
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.31 E-value=0.0022 Score=33.12 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCC---------CCC-hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMP---------VRN-VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~---------~~~-~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.+++.+=..|...|++++|.+.|++.. .|+ ..+++.|-..|.+.|+.++|.+.|
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 69 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYY 69 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 467777788888888888888887642 133 456777778888888888888765
No 62
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.30 E-value=0.028 Score=33.37 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=54.8
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCch--HHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVAN--VYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~ 77 (86)
+...|++++|...+.+..+..-.+. ...+..+-..|.+.|++++|...+++... | +...+..+-..|...|+
T Consensus 45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 4567999999999999987653332 46788888999999999999999987642 4 45566666667777666
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.26 E-value=0.026 Score=37.97 Aligned_cols=77 Identities=9% Similarity=-0.078 Sum_probs=59.1
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHH--HHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGS--SLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.|+.+.+.+.+..+.+. .|+..... .....+...|+.+.|...+++..+ | +......+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4678889999999888763 46654433 335678889999999999988753 4 566778888999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+++
T Consensus 207 ~~~l 210 (398)
T PRK10747 207 LDIL 210 (398)
T ss_pred HHHH
Confidence 8665
No 64
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.25 E-value=0.0023 Score=31.88 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=39.3
Q ss_pred HHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 39 SFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 39 ~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..+.+.|++++|...|++... | +...|..+-..+.+.|++++|...|
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 54 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYY 54 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 467889999999999998753 5 5677888889999999999999876
No 65
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.24 E-value=0.042 Score=31.33 Aligned_cols=80 Identities=10% Similarity=0.000 Sum_probs=58.2
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHH--HHHHHHHHHHhcCChHHHHHhhcCCC--CCC---hhh-HHHHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVY--VGSSLISFCGKCGENIDVYKMFEKMP--VRN---VVS-WTAIIAAFAQEWE 77 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~--~~~---~~t-~~~li~~~~~~g~ 77 (86)
+-..|+.++|..+|......|+..... .+--+=+.|-.-|++++|..+|++.. .|+ ... ...+-.++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 446799999999999999999876633 34444577778899999999999764 254 222 2223346788899
Q ss_pred hhHhhhcc
Q 043594 78 VDMCYTFI 85 (86)
Q Consensus 78 ~~~a~~~f 85 (86)
.++|++.+
T Consensus 91 ~~eAl~~~ 98 (120)
T PF12688_consen 91 PKEALEWL 98 (120)
T ss_pred HHHHHHHH
Confidence 99998754
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.18 E-value=0.053 Score=36.55 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=58.9
Q ss_pred CCchhHHHHHHHHHHHHcCCchH---HHHHHHHHHHHhcCChHHHHHhhc--CC--CCCChhhHHHHHHHHhhcCChhHh
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANV---YVGSSLISFCGKCGENIDVYKMFE--KM--PVRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~~~--~m--~~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.++.+.+.+..+...+. .|+. ....++=..|.+.|++++|++.|+ .. ..||...+..+-..+.+.|+.++|
T Consensus 312 ~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45666777777766654 3433 456677788889999999999999 34 258888888999999999999999
Q ss_pred hhccC
Q 043594 82 YTFIV 86 (86)
Q Consensus 82 ~~~f~ 86 (86)
.++|+
T Consensus 390 ~~~~~ 394 (409)
T TIGR00540 390 AAMRQ 394 (409)
T ss_pred HHHHH
Confidence 88763
No 67
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.17 E-value=0.025 Score=42.45 Aligned_cols=79 Identities=10% Similarity=-0.008 Sum_probs=54.8
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+.+.|+.++|.+.+....+.. ..+...+..+.....+.|++++|...|++.. .|+...|..+-..+.+.|+.++|.+
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456677888888887777654 2222233333333445588888888888765 3777788888888999999999887
Q ss_pred cc
Q 043594 84 FI 85 (86)
Q Consensus 84 ~f 85 (86)
.|
T Consensus 631 ~l 632 (987)
T PRK09782 631 DL 632 (987)
T ss_pred HH
Confidence 65
No 68
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.16 E-value=0.031 Score=41.22 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=40.8
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchH--HHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHH---HHHhhcCChhHh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANV--YVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAII---AAFAQEWEVDMC 81 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li---~~~~~~g~~~~a 81 (86)
.+.|+.++|...+.+..+.. |+. .++ .++..+...|+.++|...+++...|+...+..+. ..|...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 35566666666666665543 332 123 5556666666666666666665555333332222 245555666666
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
+++|
T Consensus 122 iely 125 (822)
T PRK14574 122 LALW 125 (822)
T ss_pred HHHH
Confidence 6554
No 69
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.15 E-value=0.072 Score=31.43 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=57.9
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHh-------
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVA--NVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFA------- 73 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~------- 73 (86)
+...|++++|...+....+..-.+ ...++..+=..|.+.|+.++|.+.+++... | ...+++.+-..|.
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~ 124 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAI 124 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHH
Confidence 345789999999999987764222 235788888899999999999999987642 3 4456666666677
Q ss_pred hcCChhHhhhc
Q 043594 74 QEWEVDMCYTF 84 (86)
Q Consensus 74 ~~g~~~~a~~~ 84 (86)
+.|+.++|...
T Consensus 125 ~~g~~~~A~~~ 135 (168)
T CHL00033 125 EQGDSEIAEAW 135 (168)
T ss_pred HcccHHHHHHH
Confidence 77787765543
No 70
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.14 E-value=0.042 Score=39.97 Aligned_cols=78 Identities=8% Similarity=-0.064 Sum_probs=41.4
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+.+.|++++|.+++....+.. +.++..+..+...+...|+.++|...+++.. .| +.. |..+-..+.+.|+.++|+
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al 136 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDEL 136 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHH
Confidence 344556666666666555442 1223344455555566666666666666543 23 233 555555566666666665
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
..|
T Consensus 137 ~~l 139 (765)
T PRK10049 137 RAM 139 (765)
T ss_pred HHH
Confidence 544
No 71
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.13 E-value=0.017 Score=33.27 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=23.5
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
..|+++++.++...+.... +.|...|..+|.+|.+.|+...|.++|+++
T Consensus 74 ~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4455555555555554433 234445555555555555555555555544
No 72
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.12 E-value=0.018 Score=43.60 Aligned_cols=76 Identities=5% Similarity=0.028 Sum_probs=62.6
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|+.++|.+++. ....++..+..+-..|.+.|+.++|.+.|++.. .| |...+..+...|...|+.++|
T Consensus 582 ~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 582 RLRDSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4556788888988876 234566677788899999999999999999875 34 678899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 657 ~~~l 660 (1157)
T PRK11447 657 RAQL 660 (1157)
T ss_pred HHHH
Confidence 9876
No 73
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.10 E-value=0.0079 Score=34.99 Aligned_cols=54 Identities=9% Similarity=-0.077 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhhccC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
.+-.+-..+...|++++|...|+.... | +...|..+-..+.+.|++++|...|+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 355566777889999999999997653 3 67888999999999999999998763
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.05 E-value=0.021 Score=39.98 Aligned_cols=82 Identities=9% Similarity=0.035 Sum_probs=60.1
Q ss_pred cchhcCCchhHHHHHHHHHHHH---cCCchHHHHHH----HHHHHHhcCChHHHHHhhcCCC----------CCC-hhhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRS---GFVANVYVGSS----LISFCGKCGENIDVYKMFEKMP----------VRN-VVSW 65 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~----li~~y~~~g~~~~A~~~~~~m~----------~~~-~~t~ 65 (86)
..|...|+++.|.+++++.++. +.-.+...+.. +=..|...+++.+|..+|+++- .|. ..++
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4677889999999999998765 11133333333 4457888899999999999773 232 3567
Q ss_pred HHHHHHHhhcCChhHhhhcc
Q 043594 66 TAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 66 ~~li~~~~~~g~~~~a~~~f 85 (86)
+.|-..|.+.|++++|...+
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~ 306 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYC 306 (508)
T ss_pred HHHHHHHhccCChHHHHHHH
Confidence 77778899999999998654
No 75
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.94 E-value=0.011 Score=34.00 Aligned_cols=54 Identities=7% Similarity=0.069 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhccC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
....++..+...|++++|..+.+... .| |...|-.+|.+|.+.|+..+|.++|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYE 120 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 45566677778999999999999875 34 67899999999999999999998763
No 76
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.81 E-value=0.055 Score=34.89 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=60.5
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC----hhhHHHHHHHHhhcCChhHh
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN----VVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~t~~~li~~~~~~g~~~~a 81 (86)
..++...|..||+...+. +..+...|..-|+.+.+.++.+.|+.+|++... |. -..|...|.-=.+.|+++.+
T Consensus 48 ~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v 126 (280)
T PF05843_consen 48 CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESV 126 (280)
T ss_dssp TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHH
Confidence 356777799999999876 667888999999999999999999999998653 22 34899999999999998877
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.++.
T Consensus 127 ~~v~ 130 (280)
T PF05843_consen 127 RKVE 130 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 77
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.80 E-value=0.044 Score=36.94 Aligned_cols=78 Identities=10% Similarity=-0.106 Sum_probs=57.4
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHH--HHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVY--VGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~ 80 (86)
....|+.+.+.+.+....+.- |+.. +--.....+...|+.+.|.+.++++.+ | +...+..+...|.+.|++++
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 345688888888888876543 4442 333346777788999999998888753 5 55677888889999999998
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|.+++
T Consensus 206 a~~~l 210 (409)
T TIGR00540 206 LDDII 210 (409)
T ss_pred HHHHH
Confidence 87765
No 78
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.78 E-value=0.011 Score=29.70 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 34 GSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 34 ~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+..+...+...|++++|...|++... | +..+|..+-..+...|++++|.+.|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 57 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDY 57 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999997642 3 4467888888899999999998876
No 79
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.68 E-value=0.055 Score=39.39 Aligned_cols=77 Identities=6% Similarity=-0.174 Sum_probs=40.8
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
-.|+.++|.+++....... ..+...+..+-..+.+.|++++|.++|++.. .| +...+..+...+.+.|+.++|...
T Consensus 27 ~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555566665555554421 2333345555556666666666666666532 12 344455555556666666666544
Q ss_pred c
Q 043594 85 I 85 (86)
Q Consensus 85 f 85 (86)
+
T Consensus 106 l 106 (765)
T PRK10049 106 A 106 (765)
T ss_pred H
Confidence 3
No 80
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.66 E-value=0.048 Score=40.24 Aligned_cols=82 Identities=7% Similarity=-0.015 Sum_probs=69.0
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---------CChhhHHHHHHHHhh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---------RNVVSWTAIIAAFAQ 74 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~t~~~li~~~~~ 74 (86)
-++.+.++..++.+.+..+...|.+.-..+--++-++|...++.++|..+|++.-. ++......|.-+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 45667788999999999999999776677899999999999999999999998632 134445789999999
Q ss_pred cCChhHhhhcc
Q 043594 75 EWEVDMCYTFI 85 (86)
Q Consensus 75 ~g~~~~a~~~f 85 (86)
.+++++|..++
T Consensus 380 ~e~~~~A~~~l 390 (822)
T PRK14574 380 SEQLDKAYQFA 390 (822)
T ss_pred cccHHHHHHHH
Confidence 99999998765
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.60 E-value=0.058 Score=37.80 Aligned_cols=81 Identities=7% Similarity=-0.021 Sum_probs=62.8
Q ss_pred chhcCCchhHHHHHHHHHHHHc----CCch---HHHHHHHHHHHHhcCChHHHHHhhcCCC---------CCCh-hhHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSG----FVAN---VYVGSSLISFCGKCGENIDVYKMFEKMP---------VRNV-VSWTA 67 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~---------~~~~-~t~~~ 67 (86)
.+-+.|.+.+|.++|...+... .+.+ ....+-|=..|.+.+..++|.++|++-. .|++ .+|..
T Consensus 376 l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~n 455 (508)
T KOG1840|consen 376 LYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLN 455 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHH
Confidence 3557899999999999986642 3222 4456666778889999999999998742 3554 67999
Q ss_pred HHHHHhhcCChhHhhhcc
Q 043594 68 IIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 68 li~~~~~~g~~~~a~~~f 85 (86)
|...|-+.|++++|.++-
T Consensus 456 L~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 456 LAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHHHHHHcccHHHHHHHH
Confidence 999999999999998763
No 82
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.59 E-value=0.046 Score=27.54 Aligned_cols=54 Identities=6% Similarity=-0.117 Sum_probs=43.6
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
..+.+.+++++|.++++.+.+.. +.++..+...=..|.+.|++++|.+.|++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35667889999999999998874 3366677777788899999999999998764
No 83
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.023 Score=36.80 Aligned_cols=78 Identities=6% Similarity=0.006 Sum_probs=54.3
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhhh
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVY-VGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+..+++.|++..+.|....-.-... .-++.|+...-.+.+.+|.-+|++|.+ |+..+-|.+...+...|++++|..
T Consensus 149 k~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 4455677777777777654222222 334556655666889999999999986 555666777788888999999987
Q ss_pred cc
Q 043594 84 FI 85 (86)
Q Consensus 84 ~f 85 (86)
++
T Consensus 229 lL 230 (299)
T KOG3081|consen 229 LL 230 (299)
T ss_pred HH
Confidence 64
No 84
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.47 E-value=0.15 Score=29.09 Aligned_cols=81 Identities=10% Similarity=0.059 Sum_probs=54.8
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc-CCCCCC----------hhhHHHHHH
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE-KMPVRN----------VVSWTAIIA 70 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~-~m~~~~----------~~t~~~li~ 70 (86)
++..+.+.+........++.+.+.+ ..++...|.++..|++.. .++..+.++ ....-| .--|...+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHH
Confidence 4566777788999999999998887 478889999999999874 456666776 322111 112455555
Q ss_pred HHhhcCChhHhhhc
Q 043594 71 AFAQEWEVDMCYTF 84 (86)
Q Consensus 71 ~~~~~g~~~~a~~~ 84 (86)
-|.+.|+.++|+++
T Consensus 91 l~~k~~~~~~Al~~ 104 (140)
T smart00299 91 LYKKDGNFKDAIVT 104 (140)
T ss_pred HHHhhcCHHHHHHH
Confidence 56666666665543
No 85
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.35 E-value=0.058 Score=35.63 Aligned_cols=51 Identities=6% Similarity=-0.043 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHh
Q 043594 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a 81 (86)
||-.-|-..|.+|+..|++++-.++-.+ .+.++-|--.+..|.+.|...+|
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 5555555555666655555555554433 12223334444444444444443
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.33 E-value=0.068 Score=34.31 Aligned_cols=79 Identities=8% Similarity=-0.064 Sum_probs=49.1
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
-.+.|++.+|...+.+..... ++|...||.+=-+|-+.|+.++|+.-|.+-.+ .+....|-|--.|.-.|+.+.|.
T Consensus 110 ~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 345667777777776665543 56667777777777777777777776665432 23444555555566666666665
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
.++
T Consensus 189 ~ll 191 (257)
T COG5010 189 TLL 191 (257)
T ss_pred HHH
Confidence 543
No 87
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.31 E-value=0.014 Score=29.20 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcC-ChhHhhh
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEW-EVDMCYT 83 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g-~~~~a~~ 83 (86)
+|..+=..+...|++++|...|++.. .| +...|..+=.+|.+.| ++++|++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH
Confidence 33333344444455555555444432 12 2334444444444444 3444443
No 88
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.17 E-value=0.021 Score=28.83 Aligned_cols=47 Identities=6% Similarity=0.012 Sum_probs=39.9
Q ss_pred HHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 39 SFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 39 ~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..|.+.+++++|.++++.+.. | +...|...=..|.+.|++++|.+.|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDL 52 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHH
Confidence 568899999999999998863 5 5667777888899999999999876
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.12 E-value=0.16 Score=32.88 Aligned_cols=79 Identities=5% Similarity=-0.218 Sum_probs=52.8
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|.+.+....+.. | +...+..+-..|...|++++|.+.|+... .|+.........-+...++.++|
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A 184 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQA 184 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHH
Confidence 3557789999999988888653 4 35577777778888899999999888754 24332112212223456677887
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 185 ~~~l 188 (296)
T PRK11189 185 KENL 188 (296)
T ss_pred HHHH
Confidence 7655
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.04 E-value=0.07 Score=39.52 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=43.7
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCC--ChhhHHHHHHHHhhcCChhHhhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
|++.|+++.|+++|.+- -.++--|+||++.|++++|.++-++.-.| .++.|-+--.-.-+.|++.+|.+
T Consensus 775 yan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 775 YANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred hccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 55666676666666432 13455677888888888888777766544 33445544455556666666655
Q ss_pred cc
Q 043594 84 FI 85 (86)
Q Consensus 84 ~f 85 (86)
+|
T Consensus 846 ly 847 (1636)
T KOG3616|consen 846 LY 847 (1636)
T ss_pred ee
Confidence 54
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.093 Score=35.73 Aligned_cols=81 Identities=11% Similarity=-0.050 Sum_probs=54.4
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHH-HHHHHhcCChHHHHHhhcCCCCC-ChhhHHHHH-HHHhhcCChhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSL-ISFCGKCGENIDVYKMFEKMPVR-NVVSWTAII-AAFAQEWEVDM 80 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~y~~~g~~~~A~~~~~~m~~~-~~~t~~~li-~~~~~~g~~~~ 80 (86)
.+.+..|+..+|+++|-++....++ |..+|-++ -.+|.+++..+-|.++|-.+..| +.++.--+| .-|.+++.+.-
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888666544444 44455444 47888888888888888887765 445555555 55778887776
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|-+.|
T Consensus 480 aaKAF 484 (557)
T KOG3785|consen 480 AAKAF 484 (557)
T ss_pred HHHhh
Confidence 66554
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.90 E-value=0.28 Score=31.33 Aligned_cols=80 Identities=10% Similarity=-0.061 Sum_probs=49.6
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
+|-..|+...|++-++..++.. +.+..+|.++-..|-+.|..+.|.+-|+.-. .| +.-+-|--=.-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3556777888888777777754 2344477777777888888888888777542 12 333333333334556666666
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
..-|
T Consensus 123 ~q~F 126 (250)
T COG3063 123 MQQF 126 (250)
T ss_pred HHHH
Confidence 5544
No 93
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.87 E-value=0.4 Score=28.71 Aligned_cols=80 Identities=8% Similarity=-0.113 Sum_probs=57.2
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+...|++++|+.+|..+...... +..-|=.|=.++-..|++++|.+.|...- .| |..++=-+=..+...|+.++|.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 34679999999999999887532 33334444455556799999999998643 34 4555556667788899999888
Q ss_pred hccC
Q 043594 83 TFIV 86 (86)
Q Consensus 83 ~~f~ 86 (86)
+-|+
T Consensus 124 ~aF~ 127 (157)
T PRK15363 124 KALK 127 (157)
T ss_pred HHHH
Confidence 7763
No 94
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.81 E-value=0.37 Score=27.76 Aligned_cols=77 Identities=9% Similarity=0.023 Sum_probs=55.8
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHH-HHH--HHHHHHhcCChHHHHHhhcCCCC--CCh----hhHHHHHHHHhhcCCh
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYV-GSS--LISFCGKCGENIDVYKMFEKMPV--RNV----VSWTAIIAAFAQEWEV 78 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~--li~~y~~~g~~~~A~~~~~~m~~--~~~----~t~~~li~~~~~~g~~ 78 (86)
..++...+.+.++.+.+.. ..++.. ... +-..+...|++++|...|+.... ||. ...-.|-..+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 4688888999999998864 223232 222 33778889999999999998753 332 3445567889999999
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|+..+
T Consensus 102 d~Al~~L 108 (145)
T PF09976_consen 102 DEALATL 108 (145)
T ss_pred HHHHHHH
Confidence 9998765
No 95
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=94.69 E-value=0.28 Score=27.52 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHH
Q 043594 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70 (86)
Q Consensus 14 ~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~ 70 (86)
+|.-|-+-+...+-. ...+-=+-+++....|++++|..+.+..+.||+..|-.|-.
T Consensus 23 EA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce 78 (115)
T TIGR02508 23 EANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE 78 (115)
T ss_pred HHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH
Confidence 444444433333322 44444455678889999999999999999999999987744
No 96
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.66 E-value=0.13 Score=34.08 Aligned_cols=70 Identities=13% Similarity=-0.039 Sum_probs=56.9
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh----------------HHHHHhhcCCC----CCChhhHHHH
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN----------------IDVYKMFEKMP----VRNVVSWTAI 68 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~----------------~~A~~~~~~m~----~~~~~t~~~l 68 (86)
.+.++--..-++.|...|++-|.-+|+.||+.+-|-.-. +.+.+++++|. -||-.+--.|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 345555666778899999999999999999998875432 56788999996 4899999999
Q ss_pred HHHHhhcCCh
Q 043594 69 IAAFAQEWEV 78 (86)
Q Consensus 69 i~~~~~~g~~ 78 (86)
|.+|++.|-.
T Consensus 165 vn~FGr~~~p 174 (406)
T KOG3941|consen 165 VNAFGRWNFP 174 (406)
T ss_pred HHHhcccccc
Confidence 9999998854
No 97
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.61 E-value=0.078 Score=36.62 Aligned_cols=56 Identities=14% Similarity=-0.051 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCCh----hhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNV----VSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~----~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+...++.+=..|.+.|++++|...|++-. .||. .+|..+-.+|.+.|+.++|++.|
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~L 135 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCL 135 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34466666667777777777777776643 3542 34777777777777777776544
No 98
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.58 E-value=0.057 Score=27.64 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=40.1
Q ss_pred chhcCCchhHHHHHHHHHHHHc--CC---ch-HHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSG--FV---AN-VYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g--~~---~~-~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
.+...|++++|...+.+..+.. +. |+ ..+++.+-..|.+.|++++|.+.+++
T Consensus 14 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 14 VYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567899999999999987651 22 33 55778888899999999999999875
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.44 E-value=0.14 Score=33.29 Aligned_cols=52 Identities=8% Similarity=-0.049 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 34 GSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 34 ~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...+-..+...|++++|...+++..+ | +...+..+-..|...|++++|.+.+
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444567778888888888887653 3 4566777778888899999888765
No 100
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=94.38 E-value=0.059 Score=40.11 Aligned_cols=75 Identities=7% Similarity=-0.055 Sum_probs=52.8
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC----CCChhhHHHHHHHHhhcCChh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP----VRNVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~t~~~li~~~~~~g~~~ 79 (86)
.+-.-+|+++.|+.+..+|.+.|+..+..-|-.|+-+ .+....+..+...|. +||..|+.--+-.+..+|...
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 3444578888888888888888888777766666655 677777777777775 478888877776666666544
Q ss_pred Hh
Q 043594 80 MC 81 (86)
Q Consensus 80 ~a 81 (86)
.+
T Consensus 289 ~~ 290 (1088)
T KOG4318|consen 289 YG 290 (1088)
T ss_pred hc
Confidence 33
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.34 E-value=0.19 Score=36.55 Aligned_cols=79 Identities=9% Similarity=0.038 Sum_probs=45.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhcCChHHHHHhhcCCCC--CC-hhhHHHHHHHHhhcCChhH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVY-VGSSLISFCGKCGENIDVYKMFEKMPV--RN-VVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~t~~~li~~~~~~g~~~~ 80 (86)
.+.+.+.+++|....++..... ||.. ..+.+=..+.+.|++++|.++|++... || ..+|.++=..+-..|+.++
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3445566666666666665543 3333 333444555556777777777766542 32 4556666666666677666
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|...|
T Consensus 207 A~~~~ 211 (694)
T PRK15179 207 ARDVL 211 (694)
T ss_pred HHHHH
Confidence 66554
No 102
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=94.30 E-value=0.079 Score=33.40 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
..+-|.+++++|...|+.||..++..|++.+++.+..
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 3456889999999999999999999999999887654
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.17 E-value=0.27 Score=34.27 Aligned_cols=48 Identities=6% Similarity=-0.059 Sum_probs=28.9
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
.|..+.|+..+..+.+. .+-|+..+....+.+.+.++.++|.+.++.+
T Consensus 319 ~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka 366 (484)
T COG4783 319 AGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKA 366 (484)
T ss_pred hcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45566666666665443 2334555555566666666666666666655
No 104
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.12 E-value=0.2 Score=24.84 Aligned_cols=50 Identities=18% Similarity=0.046 Sum_probs=42.5
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC-ChHHHHHhhcC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG-ENIDVYKMFEK 56 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~ 56 (86)
+.+.|++++|.+.|...++.. +.++..+..+=.+|.+.| ++++|.+.|++
T Consensus 13 ~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 13 YFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 456899999999999999975 446778888889999999 79999998875
No 105
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.07 Score=39.82 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=62.6
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC-----CCChhhHHHHHHHHhhcCChhH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-----VRNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~t~~~li~~~~~~g~~~~ 80 (86)
++..|+++.|..||..+....- -+.-+|-.+-+.|..+|++..|.++|+..- +-+...-+.|-.++.++|++.+
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 5678999999999999988764 233467778899999999999999999753 2366677888899999999988
Q ss_pred hhhc
Q 043594 81 CYTF 84 (86)
Q Consensus 81 a~~~ 84 (86)
|.+.
T Consensus 735 ak~~ 738 (1018)
T KOG2002|consen 735 AKEA 738 (1018)
T ss_pred HHHH
Confidence 8753
No 106
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.05 E-value=0.09 Score=36.77 Aligned_cols=78 Identities=12% Similarity=0.242 Sum_probs=58.4
Q ss_pred hcCCchhHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhcCChHHHHHhhcC-CC-CCChhhH-HHHHHHHhhcCChhHhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEK-MP-VRNVVSW-TAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-m~-~~~~~t~-~~li~~~~~~g~~~~a~ 82 (86)
-+..-+..|..+|....+.| ..+++++++++|.-|+. |+..-|..+|+- |. .||+..| +--+.-..+-|+-+.|.
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHH
Confidence 34455778899999999999 78899999999997764 777788888883 33 3666554 45566677777777777
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
.+|
T Consensus 487 aLF 489 (660)
T COG5107 487 ALF 489 (660)
T ss_pred HHH
Confidence 666
No 107
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.00 E-value=0.24 Score=33.74 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=45.0
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVY-VGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
+-+.++.+.|.++..+.++. .|+.+ +|..|...|.+.|++++|...++.+|
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 45678889999999998885 47666 99999999999999999999999986
No 108
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.92 E-value=0.071 Score=29.93 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.....+...|.+.|++++|...|+...+ | +...|..+-..|.+.|++++|...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888899999999999987642 4 6678888889999999999998765
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.83 E-value=0.28 Score=30.21 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=55.9
Q ss_pred CCchhHHHHHHHHHHHHcCCchHH-HHH-----------------HHHHHHHhcCChHHHHHhhcCCCC--CC----hhh
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVY-VGS-----------------SLISFCGKCGENIDVYKMFEKMPV--RN----VVS 64 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~-~~~-----------------~li~~y~~~g~~~~A~~~~~~m~~--~~----~~t 64 (86)
.|+.++|.+.+..+.+.. |+.. .+. .+-..|.+.|+.++|...|++... |+ ...
T Consensus 128 ~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a 205 (235)
T TIGR03302 128 QTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEA 205 (235)
T ss_pred HHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHH
Confidence 367788888888887753 3321 211 344668889999999999998642 32 468
Q ss_pred HHHHHHHHhhcCChhHhhhcc
Q 043594 65 WTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 65 ~~~li~~~~~~g~~~~a~~~f 85 (86)
|..+...+.+.|+.++|...+
T Consensus 206 ~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 206 LARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 899999999999999998765
No 110
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.77 E-value=0.17 Score=35.54 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCC--CCCChhhHHHHHHHH-hhcCChhHhhhcc
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKM--PVRNVVSWTAIIAAF-AQEWEVDMCYTFI 85 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~t~~~li~~~-~~~g~~~~a~~~f 85 (86)
.+.-=|-..|..-.-+++|...|+.. .+|+.+-|-.||..| -|.|+..+|+++|
T Consensus 627 e~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33333334444444455555555543 368999999988665 4578888888876
No 111
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.62 E-value=0.062 Score=23.77 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=8.7
Q ss_pred HHHHHHHHhhcCChhHhhhc
Q 043594 65 WTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 65 ~~~li~~~~~~g~~~~a~~~ 84 (86)
|+.|=..|.+.|++++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~ 21 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEY 21 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 34444444444444444443
No 112
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.54 E-value=0.27 Score=33.00 Aligned_cols=80 Identities=8% Similarity=-0.012 Sum_probs=58.4
Q ss_pred chhcCCchhHHHHHHHHHHHH-cCCchHHH--HHHHHHHHHhcCChHHHHHhhcCCCC-CC--hhhHHHHHHHHhhcCCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRS-GFVANVYV--GSSLISFCGKCGENIDVYKMFEKMPV-RN--VVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~m~~-~~--~~t~~~li~~~~~~g~~ 78 (86)
-|.+.|.+|.|..+|.-+.++ +...+... .=-|=.=|.+.|.++.|+++|....+ |+ ...---|+.-|-...+|
T Consensus 78 LfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW 157 (389)
T COG2956 78 LFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW 157 (389)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence 456778899999999988775 34333332 23344668889999999999998765 32 33456688999999999
Q ss_pred hHhhhc
Q 043594 79 DMCYTF 84 (86)
Q Consensus 79 ~~a~~~ 84 (86)
++|+++
T Consensus 158 ~KAId~ 163 (389)
T COG2956 158 EKAIDV 163 (389)
T ss_pred HHHHHH
Confidence 998864
No 113
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.53 E-value=0.11 Score=22.97 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
+++.|=..|.+.|++++|.++|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467788899999999999999986
No 114
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=93.48 E-value=0.23 Score=28.35 Aligned_cols=32 Identities=6% Similarity=-0.183 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGK 43 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~ 43 (86)
+-+..-++.+|...+++|+.-+|+.+|....+
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 45677899999999999999999999998876
No 115
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.47 E-value=0.27 Score=36.56 Aligned_cols=83 Identities=11% Similarity=0.086 Sum_probs=67.1
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChh
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~ 79 (86)
-.++-+.|.+.+|..++..+...-.--+..+|=.+-.+|-..|..+.|.+.|+... .| ++-.--+|-+-+-+.|+.+
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH
Confidence 35677889999999999999887555568899999999999999999999999875 35 3445566667788999999
Q ss_pred Hhhhcc
Q 043594 80 MCYTFI 85 (86)
Q Consensus 80 ~a~~~f 85 (86)
+|.+.+
T Consensus 501 kalEtL 506 (895)
T KOG2076|consen 501 KALETL 506 (895)
T ss_pred HHHHHH
Confidence 998764
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.47 E-value=0.39 Score=31.28 Aligned_cols=68 Identities=7% Similarity=-0.062 Sum_probs=51.5
Q ss_pred CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCCh
Q 043594 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~ 78 (86)
..+.+|..+|.++.. .+.+++.+.|.+.-++...|++++|.+++++.-+ .|..|..-+|......|+.
T Consensus 181 e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp TCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred hhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 468999999999755 4678999999999999999999999999987543 2455666677777777766
No 117
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.30 E-value=0.67 Score=29.84 Aligned_cols=76 Identities=7% Similarity=-0.095 Sum_probs=56.1
Q ss_pred cCCchhHHHHHHHHHHHHcCCchH----HHHHHHHHHHHhcCChHHHHHhhcCCCC--CC----hhhHHHHHHHHhhcCC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANV----YVGSSLISFCGKCGENIDVYKMFEKMPV--RN----VVSWTAIIAAFAQEWE 77 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~t~~~li~~~~~~g~ 77 (86)
+.|++++|...|..+++.- |+. ..+=-+-..|...|++++|...|+.+.. |+ ...+--+...|.+.|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 4688999999999998763 332 3444566788899999999999998862 43 2334444566778999
Q ss_pred hhHhhhcc
Q 043594 78 VDMCYTFI 85 (86)
Q Consensus 78 ~~~a~~~f 85 (86)
.++|.++|
T Consensus 233 ~~~A~~~~ 240 (263)
T PRK10803 233 TAKAKAVY 240 (263)
T ss_pred HHHHHHHH
Confidence 99998876
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.29 E-value=0.3 Score=30.08 Aligned_cols=79 Identities=6% Similarity=-0.083 Sum_probs=54.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch----HHHHHHHHHHHHhcCChHHHHHhhcCCCC--CChh----hHHHHHHHHhh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN----VYVGSSLISFCGKCGENIDVYKMFEKMPV--RNVV----SWTAIIAAFAQ 74 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~----t~~~li~~~~~ 74 (86)
.+-+.|++++|...+.++.+.. |+ ...+-.+-..|.+.|++++|...|++..+ |+.. ++..+-..+.+
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence 4557899999999999987753 32 23566777889999999999999998752 4221 34433344444
Q ss_pred c--------CChhHhhhcc
Q 043594 75 E--------WEVDMCYTFI 85 (86)
Q Consensus 75 ~--------g~~~~a~~~f 85 (86)
. |+.++|.+.|
T Consensus 120 ~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 120 QIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred hcccccCCHHHHHHHHHHH
Confidence 3 6677777655
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.23 E-value=0.82 Score=29.50 Aligned_cols=79 Identities=5% Similarity=-0.096 Sum_probs=63.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a 81 (86)
+|.+.|++++|..-|.+..+.- .-++...|.|--.|.-.|+.++|+.++.+-. ..|...-.-|.-.-+..|++++|
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 4668999999999999888763 2356677778778888999999999998653 23777777788888899999998
Q ss_pred hhc
Q 043594 82 YTF 84 (86)
Q Consensus 82 ~~~ 84 (86)
.++
T Consensus 222 ~~i 224 (257)
T COG5010 222 EDI 224 (257)
T ss_pred Hhh
Confidence 765
No 120
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.20 E-value=0.11 Score=23.85 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHH
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAI 68 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~l 68 (86)
++..+-..|.+.|++++|.++|++..+ | |...|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 455666778888888888888887753 4 34444443
No 121
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.07 E-value=0.44 Score=33.53 Aligned_cols=59 Identities=7% Similarity=-0.014 Sum_probs=46.9
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 27 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...++..+-++--.+...|++++|...+++.. .|+...|..+-..|...|+.++|.+.|
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34455677777666667899999999999875 477788888889999999999998765
No 122
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.03 E-value=0.55 Score=32.02 Aligned_cols=76 Identities=9% Similarity=-0.115 Sum_probs=54.7
Q ss_pred cCCchhHHHHHHHHHHH-HcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
+.++...-.+..++..+ .+- ++-.+.+|=.-|.+.+.+.+|.+.|+.-. .|+..+|+-+-.+|-+-|+..+|.++
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 34444444444444433 222 34667777778889999999999999653 48999999999999999999998876
Q ss_pred c
Q 043594 85 I 85 (86)
Q Consensus 85 f 85 (86)
+
T Consensus 384 r 384 (400)
T COG3071 384 R 384 (400)
T ss_pred H
Confidence 5
No 123
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.79 E-value=0.81 Score=30.31 Aligned_cols=69 Identities=7% Similarity=0.071 Sum_probs=49.0
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhh
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
|.++++.++|++-.++-.. +-.+.-|-.+++.+.+.|...+|...... +++..-+..|.++|++.+|.
T Consensus 215 i~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k------~~~~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 215 IKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPK------IPDEERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHh------CChHHHHHHHHHCCCHHHHH
Confidence 5677788888776664321 23457777788888888888888888876 33355677888888888876
Q ss_pred h
Q 043594 83 T 83 (86)
Q Consensus 83 ~ 83 (86)
+
T Consensus 283 ~ 283 (319)
T PF04840_consen 283 Q 283 (319)
T ss_pred H
Confidence 4
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=92.54 E-value=0.86 Score=26.96 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC----hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMPV--RN----VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...+..+-..|...|++++|...|++... |+ ...|..+-..|.+.|+.++|.+.+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34566677788889999999999997642 32 357888889999999999998765
No 125
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=92.53 E-value=0.91 Score=27.82 Aligned_cols=74 Identities=11% Similarity=-0.010 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHH-HhhcCC--hhHhhhc
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAA-FAQEWE--VDMCYTF 84 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~-~~~~g~--~~~a~~~ 84 (86)
+.+++...+....+.. ..|...|..+-..|...|++++|...|++... | |...|..+-.. |.+.|+ .++|.++
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3344444444444433 44667888888999999999999999997652 4 66777777776 467776 4788776
Q ss_pred c
Q 043594 85 I 85 (86)
Q Consensus 85 f 85 (86)
+
T Consensus 133 l 133 (198)
T PRK10370 133 I 133 (198)
T ss_pred H
Confidence 5
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.41 E-value=0.87 Score=33.30 Aligned_cols=78 Identities=3% Similarity=-0.209 Sum_probs=61.4
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhcCChHHHHHhhcCCC--CCCh-hhHHHHHHHHhhcCChhHhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVY-VGSSLISFCGKCGENIDVYKMFEKMP--VRNV-VSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~-~t~~~li~~~~~~g~~~~a~ 82 (86)
...|..++|..++...... .||.. ....+...+.+.+++++|...+++.- .||. ...+.+-..+.+.|+.++|.
T Consensus 97 ~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHH
Confidence 4578899999999988875 46544 66777788899999999999999875 3544 44566667899999999999
Q ss_pred hccC
Q 043594 83 TFIV 86 (86)
Q Consensus 83 ~~f~ 86 (86)
++|+
T Consensus 175 ~~y~ 178 (694)
T PRK15179 175 ACFE 178 (694)
T ss_pred HHHH
Confidence 8874
No 127
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.37 E-value=0.25 Score=32.25 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..++..++..+..+|+.+.+...+++..+ | |...|.-||.+|.+.|+...|++.|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 44777888899999999999988887653 3 7788999999999999999988765
No 128
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.21 E-value=0.49 Score=34.57 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=20.8
Q ss_pred cCCchhHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
..|.++.|...+++.... +|+ +-.||.|-.++-..|++.+|++.+++
T Consensus 298 eqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred ccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 344444444444444332 222 22444444444444555555544443
No 129
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.17 E-value=0.15 Score=26.60 Aligned_cols=51 Identities=14% Similarity=-0.007 Sum_probs=35.1
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
.++-+.|++++|.+++.. .+.+.. +....-.+-.+|.+.|++++|.++|++
T Consensus 33 ~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 456688999999999988 333221 222333445778899999999999864
No 130
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=92.14 E-value=0.71 Score=24.83 Aligned_cols=56 Identities=5% Similarity=-0.132 Sum_probs=44.1
Q ss_pred cchhcCCchhHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
..+.+.|++++|.+.+..+.+.. ......++..+-..|.+.|+.++|...+++..+
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 45667899999999999998753 222355677777888999999999999998753
No 131
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.10 E-value=0.51 Score=27.90 Aligned_cols=56 Identities=5% Similarity=-0.117 Sum_probs=34.3
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
|+...+.|.-++..++...+.+ +-++++...-.+-++|.+-|...+|.+++.+.++
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4455566777777777777776 3466777777777888888888888777765443
No 132
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.05 E-value=0.27 Score=21.68 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
.+++.|-..|...|++++|..++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 46788888899999999999888764
No 133
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=91.89 E-value=0.84 Score=32.26 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=28.3
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
+.|++.+|-+..+...... .-|-++-+..+..+.++|++++|.+++....
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 4566666655555554443 2355566666666666666666666555443
No 134
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.56 E-value=0.44 Score=19.39 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=12.5
Q ss_pred HHHHHHHhcCChHHHHHhhc
Q 043594 36 SLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 36 ~li~~y~~~g~~~~A~~~~~ 55 (86)
.+-..+...|++++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455666677777766655
No 135
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.43 E-value=0.86 Score=31.27 Aligned_cols=49 Identities=8% Similarity=0.278 Sum_probs=39.9
Q ss_pred HHHHHHhcCChHHHHHhhcCCCCC---ChhhHHHHH-HHHhhcCChhHhhhcc
Q 043594 37 LISFCGKCGENIDVYKMFEKMPVR---NVVSWTAII-AAFAQEWEVDMCYTFI 85 (86)
Q Consensus 37 li~~y~~~g~~~~A~~~~~~m~~~---~~~t~~~li-~~~~~~g~~~~a~~~f 85 (86)
+-.+++.-|...+|+++|=.+..| |-.+|-+++ ..|.++|++.-|.++|
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 455667779999999999988764 677887776 6799999999998765
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=91.41 E-value=1.6 Score=30.55 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=61.3
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
+.+.++..+|.+.++.++.. .|+ ..++-.+=.+|.+.|+..+|...++.-. .| |...|..|-.+|...|+..++
T Consensus 350 ~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 34678888998888888775 466 5566667789999999999999998764 34 788999999999999998887
Q ss_pred hh
Q 043594 82 YT 83 (86)
Q Consensus 82 ~~ 83 (86)
..
T Consensus 428 ~~ 429 (484)
T COG4783 428 LL 429 (484)
T ss_pred HH
Confidence 54
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=91.39 E-value=0.56 Score=27.59 Aligned_cols=73 Identities=5% Similarity=-0.141 Sum_probs=52.4
Q ss_pred hHHHHHHHHHH-HHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC----hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 13 RGGTQYQCLAV-RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN----VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 13 ~~a~~~~~~m~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~----~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.++...+..+. ..+-.--...+..+...+...|++++|...|++.. .|+ ..+|..+=..|.+.|+.++|.+.|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444445553 33333346677788888888999999999999763 232 347888889999999999999875
No 138
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.34 E-value=0.066 Score=39.97 Aligned_cols=75 Identities=9% Similarity=0.174 Sum_probs=59.3
Q ss_pred CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCC---ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR---NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+..+.|.++|..+.+.. +.|.+.-|=+=-.++.+|++.+|.++|.+..+. +.-+|--+-..|...|++..|++.|
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 45678889998888753 335556665666678899999999999998753 4567888889999999999999877
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.00 E-value=1 Score=29.71 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=62.0
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
.+.+++.+|.+.|.+.++.. .-|++-|.----+|++-|.++.|.+=-+.-.. | ..-+|..|=.+|.-.|++++|.+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 45688889999999888753 34677788888999999999999886665443 3 35678888899999999999988
Q ss_pred ccC
Q 043594 84 FIV 86 (86)
Q Consensus 84 ~f~ 86 (86)
.|+
T Consensus 171 ayk 173 (304)
T KOG0553|consen 171 AYK 173 (304)
T ss_pred HHH
Confidence 753
No 140
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.78 E-value=1.2 Score=29.77 Aligned_cols=65 Identities=14% Similarity=-0.028 Sum_probs=48.9
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAII 69 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li 69 (86)
.++.+.|++++|...+.+.++.. ..+...|..+-..|...|++++|...|++.. .|+......++
T Consensus 44 ~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 44 QANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35667899999999999998864 2356678888889999999999999999875 35433333333
No 141
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.69 E-value=1 Score=31.95 Aligned_cols=77 Identities=12% Similarity=0.015 Sum_probs=54.0
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC--CCCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM--PVRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+...+..|..+|++.+..==+ -.-.|=.-+.|=-.-|++..|+++|+.= .+||...|++.|.-=.|.+.++.|..++
T Consensus 119 knk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IY 197 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIY 197 (677)
T ss_pred hhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566777777766654211 2224444444555568888888888863 2799999999999999999999998776
No 142
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=90.28 E-value=0.79 Score=21.76 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=28.8
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISF 40 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 40 (86)
-+.|.+++++.+++.|.+.|+..++.++..++.-
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3568888999999999999999999988887753
No 143
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=0.97 Score=32.33 Aligned_cols=78 Identities=9% Similarity=0.008 Sum_probs=56.9
Q ss_pred CCchhHHHHHHHHHHHH--cCCc----hHHHHHHHHHHHHhcCChHHHHHhhcCC---CCCChhhHHHHHHHHhhcCChh
Q 043594 9 TRNIRGGTQYQCLAVRS--GFVA----NVYVGSSLISFCGKCGENIDVYKMFEKM---PVRNVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~--g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m---~~~~~~t~~~li~~~~~~g~~~ 79 (86)
.+.+.+|..+|...+.. ..-+ -..+++.|=..|-++++.++|...|++- ...|..+++++=-.|...|+++
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 45677777777666511 1111 2346777778888999999999999863 4568888888888899999999
Q ss_pred HhhhccC
Q 043594 80 MCYTFIV 86 (86)
Q Consensus 80 ~a~~~f~ 86 (86)
.|++.|+
T Consensus 507 ~Aid~fh 513 (611)
T KOG1173|consen 507 KAIDHFH 513 (611)
T ss_pred HHHHHHH
Confidence 9988763
No 144
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.97 E-value=1.2 Score=31.95 Aligned_cols=47 Identities=13% Similarity=0.307 Sum_probs=37.2
Q ss_pred cCCchhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
+..-+..|+.+|....+.+-.+ ++++.+++|..||. ++..-|.++|+
T Consensus 378 R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 4455778889999999888777 88999999998775 56667777776
No 145
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.81 E-value=1.2 Score=33.49 Aligned_cols=75 Identities=8% Similarity=0.021 Sum_probs=56.0
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhh
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
|..|.++|.+.+|.++-.+.. |=+....+|-+--.-.-+.|++.+|+++|-.+.+||.. |..|-+.|..+..+
T Consensus 798 i~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMI 870 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHH
Confidence 567889999999887765442 33344556666666677889999999999999889876 77888888777766
Q ss_pred hc
Q 043594 83 TF 84 (86)
Q Consensus 83 ~~ 84 (86)
++
T Consensus 871 rl 872 (1636)
T KOG3616|consen 871 RL 872 (1636)
T ss_pred HH
Confidence 54
No 146
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.78 E-value=1.1 Score=28.67 Aligned_cols=80 Identities=10% Similarity=-0.039 Sum_probs=56.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC-CCC----hhhHHHHHHHHhhcCChh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VRN----VVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~~----~~t~~~li~~~~~~g~~~ 79 (86)
.|.+.|..+.|.+-|....+.. +-+--+.|..=-.+|..|++++|...|++-. .|+ ..||.-+--...+.|+.+
T Consensus 78 ~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 78 YYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFD 156 (250)
T ss_pred HHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCch
Confidence 3556788888888888776643 1234466666667888899999999888654 343 346766666777888888
Q ss_pred Hhhhcc
Q 043594 80 MCYTFI 85 (86)
Q Consensus 80 ~a~~~f 85 (86)
.|.+.|
T Consensus 157 ~A~~~l 162 (250)
T COG3063 157 QAEEYL 162 (250)
T ss_pred hHHHHH
Confidence 887765
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.57 E-value=0.79 Score=34.31 Aligned_cols=68 Identities=7% Similarity=-0.063 Sum_probs=29.4
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CChhhHHHHHHHHhhcCC
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RNVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~t~~~li~~~~~~g~ 77 (86)
.|..++|..+++.....+.. |..|..++...|-..|+.++|..+|+...+ |+..--..+..+|.|-++
T Consensus 56 ~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKS 125 (932)
T ss_pred hcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 34444444444433333322 444444555555555555555555544432 333333334444444443
No 148
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.51 E-value=0.76 Score=36.20 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHHHcCCchH-HHHHHHHHHHHhcCChHHHHHhhcCCCCC---ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 11 NIRGGTQYQCLAVRSGFVANV-YVGSSLISFCGKCGENIDVYKMFEKMPVR---NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
.-+...++|++..+.. |+ .+|..|...|-+.++.++|-++++.|-++ ...+|...+....+.++-++|.++
T Consensus 1512 ~eesl~kVFeRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1512 TEESLKKVFERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred cHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHH
Confidence 3444555555555543 22 35666667777777777777777776532 345666666666666665555444
No 149
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.02 E-value=1.6 Score=32.12 Aligned_cols=81 Identities=9% Similarity=0.055 Sum_probs=63.4
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC-hhhHHHHHHHHhhcCChhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN-VVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~t~~~li~~~~~~g~~~~ 80 (86)
.++-..|++.+|.+.+.......- -..-..+.|-..|...|.+++|..+|...-+ |+ ...+|-|-+-|-+.|++++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHH
Confidence 455677999999999988877642 2344778888899999999999999987653 44 3568888899999999999
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|+..+
T Consensus 407 Ai~~Y 411 (966)
T KOG4626|consen 407 AIMCY 411 (966)
T ss_pred HHHHH
Confidence 98654
No 150
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.61 E-value=1.2 Score=29.31 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHh--c----CChHHHHHhhcCCCC-------CChhhHHHHHHHHhhcCCh
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGK--C----GENIDVYKMFEKMPV-------RNVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~--~----g~~~~A~~~~~~m~~-------~~~~t~~~li~~~~~~g~~ 78 (86)
+++...++..|.+.||.-+.++|-+-...... . -...+|..+|+.|.+ ++-+++.+|+.+ +.+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 66778899999999999998887764333333 2 345788899999963 466777777766 44444
Q ss_pred h
Q 043594 79 D 79 (86)
Q Consensus 79 ~ 79 (86)
+
T Consensus 156 e 156 (297)
T PF13170_consen 156 E 156 (297)
T ss_pred H
Confidence 3
No 151
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.53 E-value=0.74 Score=33.94 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=48.2
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
.+++..+++++-+++-+.+. .+.-|-.++..+.+.|+.++|.+.+..... .. -...+|.+.|++.+|.+
T Consensus 723 ~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--l~---ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--LQ---EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC--hH---HHHHHHHHhccHHHHHH
Confidence 45566666666655544332 245566678888999999999998886543 11 56788999999988875
Q ss_pred c
Q 043594 84 F 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 792 ~ 792 (829)
T KOG2280|consen 792 L 792 (829)
T ss_pred H
Confidence 3
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.27 E-value=2.5 Score=24.00 Aligned_cols=69 Identities=7% Similarity=-0.017 Sum_probs=47.5
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCch----HHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVAN----VYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~ 74 (86)
+.+...|+.++|..++......- |+ ..+...+-..+...|+.++|...+-+..-++...|.--|..|..
T Consensus 46 stlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 46 STLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667899999999999887652 33 22222333466778999999998876544555567666666653
No 153
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.16 E-value=4 Score=24.69 Aligned_cols=52 Identities=10% Similarity=-0.035 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCCCC------hhhHHHHHHHHhhcCChhHhhh
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPVRN------VVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~t~~~li~~~~~~g~~~~a~~ 83 (86)
..+..+-+-|++.|+.++|.+.|.++.+.. +..+-.+|......|++..+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~ 94 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEK 94 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 478888899999999999999999987542 3345667777777778776654
No 154
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=1.2 Score=31.29 Aligned_cols=59 Identities=5% Similarity=0.052 Sum_probs=49.0
Q ss_pred CCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 27 FVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 27 ~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
++| |++.|.+|=+.|.+-+++++|.++|..... .+...+..|-..|=+-++..+|...|
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445 788999999999999999999999997653 34477888888899988888887655
No 155
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.96 E-value=0.84 Score=19.87 Aligned_cols=22 Identities=5% Similarity=0.188 Sum_probs=13.1
Q ss_pred ChhhHHHHHHHHhhcCChhHhh
Q 043594 61 NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 61 ~~~t~~~li~~~~~~g~~~~a~ 82 (86)
|..+|+-|=..|.+.|+.++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555666666666666666654
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.87 E-value=2.3 Score=32.05 Aligned_cols=76 Identities=8% Similarity=0.033 Sum_probs=57.6
Q ss_pred cCCchhHHHHHHHHHHHH-cCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhhh
Q 043594 8 STRNIRGGTQYQCLAVRS-GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
..+++.+|.+..+.+.+. +-.+-..++.+++ ..|.|+.++|..+++.... -|..|-.++-..|-+.|+.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 457788888888777554 4444444444443 3578999999999998754 278899999999999999999998
Q ss_pred cc
Q 043594 84 FI 85 (86)
Q Consensus 84 ~f 85 (86)
+|
T Consensus 99 ~Y 100 (932)
T KOG2053|consen 99 LY 100 (932)
T ss_pred HH
Confidence 76
No 157
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.52 E-value=0.65 Score=33.90 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCC--CChhhHHHHHHHHhh
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPV--RNVVSWTAIIAAFAQ 74 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~t~~~li~~~~~ 74 (86)
+.|++|-+.|.+.|++++|+++|++-.. -.+--|+.+.++|++
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 4888888888888888888888886432 233345556666654
No 158
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=87.28 E-value=3.3 Score=29.38 Aligned_cols=78 Identities=5% Similarity=-0.032 Sum_probs=59.6
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhcCChHHHHHhhcCCCCC---ChhhHHHHHHHHhhcCChhHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPVR---NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~t~~~li~~~~~~g~~~~a 81 (86)
+...|+.++|.+..+..+.. .|+ +-.|-.--..|-+.|++++|.+.+++-..- |-..=|-...-+.|+|++++|
T Consensus 204 yd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A 281 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEA 281 (517)
T ss_pred HHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHH
Confidence 45678899998888877775 465 346777777888999999999999876653 444556677888999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+++
T Consensus 282 ~~~~ 285 (517)
T PF12569_consen 282 EKTA 285 (517)
T ss_pred HHHH
Confidence 8754
No 159
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=87.14 E-value=1.5 Score=30.01 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=43.4
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
|-+.+.+.+|...++.-. ..+|+..+|+-+-+.|-+.|+.++|.+++++-
T Consensus 338 ~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 338 ALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 557788999999999444 46799999999999999999999999998863
No 160
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=87.01 E-value=2.6 Score=29.45 Aligned_cols=71 Identities=8% Similarity=-0.078 Sum_probs=54.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchH----HHHHHHHHHHHhcCChHHHHHhhcCCCC------------CCh------
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANV----YVGSSLISFCGKCGENIDVYKMFEKMPV------------RNV------ 62 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~m~~------------~~~------ 62 (86)
++.+.|++++|...++..++.. |+. ..|..+-.+|.+.|++++|.+.+++..+ ||.
T Consensus 84 AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~DpdL~plR~~ 161 (453)
T PLN03098 84 SLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILNDPDLAPFRAS 161 (453)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHhCcchhhhccc
Confidence 5667899999999999988864 653 4689999999999999999998886532 222
Q ss_pred hhHHHHHHHHhhcCC
Q 043594 63 VSWTAIIAAFAQEWE 77 (86)
Q Consensus 63 ~t~~~li~~~~~~g~ 77 (86)
..|..++.+..+.|.
T Consensus 162 pef~eLlee~rk~G~ 176 (453)
T PLN03098 162 PEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHHHHHHHHhCC
Confidence 245667777766665
No 161
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=86.86 E-value=4 Score=23.14 Aligned_cols=67 Identities=10% Similarity=-0.020 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHh
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a 81 (86)
-++|.-|.+-+...+- ....+-=+-+..+.+.|++++|...=...+.||+..|-+|-. .|.|.-+++
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~ 88 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASAL 88 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHH
Confidence 4677778777777664 344444455677889999999966666667799999987643 344544443
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=86.23 E-value=2.3 Score=30.08 Aligned_cols=48 Identities=10% Similarity=-0.110 Sum_probs=42.9
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
..|++++|.+.+++....+ |+...|..+-..|...|+.++|.+.|++-
T Consensus 432 ~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3589999999999988876 68889999999999999999999999874
No 163
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.21 E-value=1.9 Score=31.25 Aligned_cols=42 Identities=7% Similarity=0.126 Sum_probs=21.2
Q ss_pred HhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 42 GKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 42 ~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
...++.++|...+++.++ | +...|-.+-..|-+-|+-+.|+.
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 334455555555554432 3 33445555555666666555553
No 164
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=2.2 Score=30.34 Aligned_cols=69 Identities=13% Similarity=0.004 Sum_probs=51.3
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~ 79 (86)
+-+.|++..|...+.++++.. +-|...|+..--+|.+.|.+..|..--+...+.|. ..+.||.|.|-..
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p----~~~kgy~RKg~al 436 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP----NFIKAYLRKGAAL 436 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc----hHHHHHHHHHHHH
Confidence 456799999999999999887 66888999999999999999988886554443222 1245555555433
No 165
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.87 E-value=5.6 Score=24.90 Aligned_cols=69 Identities=4% Similarity=-0.001 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC-------CCCChhhHHHHHHHHhhcCChhHhh
Q 043594 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM-------PVRNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-------~~~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
++|.+.|-.+...+---|+...-+|-..|. ..+.++|..++.+. ..+|...+.+|.+.|-+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 467777777888776677778878777776 56777777766644 2468889999999999999999885
No 166
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.69 E-value=3.1 Score=25.15 Aligned_cols=49 Identities=10% Similarity=-0.071 Sum_probs=34.4
Q ss_pred CchhHHHHHHHHHHH-HcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 10 RNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+.+......+-..+ ....|++.++..++..+...|+.++|.+..+++.
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444433 3467888888888888899999999988888775
No 167
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=85.60 E-value=3.3 Score=32.98 Aligned_cols=84 Identities=8% Similarity=0.055 Sum_probs=56.0
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc--------------------------
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE-------------------------- 55 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~-------------------------- 55 (86)
|+.-|.+....++|-++++.|.+. +.-...+|....+...+..+-+.|..++.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 344566778888999999999663 22455566666666666655444444444
Q ss_pred ----------CCC--CC-ChhhHHHHHHHHhhcCChhHhhhccC
Q 043594 56 ----------KMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 56 ----------~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
... .| -.-.|+..|+.=.++|+.+.+.++|+
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 322 11 34568999999999999888888874
No 168
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.49 E-value=2.3 Score=27.85 Aligned_cols=68 Identities=3% Similarity=-0.162 Sum_probs=51.9
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---------CCChhhHHHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---------VRNVVSWTAIIAA 71 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---------~~~~~t~~~li~~ 71 (86)
+.++...|+++.+...+.++.... .-|...|-.+|.+|.+.|+...|...|+++. +|-..++......
T Consensus 160 ae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 160 AEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 345556677888888888887754 4578899999999999999999999999874 3555555555444
No 169
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.24 E-value=1.6 Score=29.44 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
..++.-+...-+.-|+-||.++++.+|+.+.+.+.+.+|-.+.-.|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3445555555567788888888888888888888888877766554
No 170
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.74 E-value=4.4 Score=27.70 Aligned_cols=80 Identities=4% Similarity=-0.180 Sum_probs=50.9
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CChhhHH-HHHHHHhhcCChhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RNVVSWT-AIIAAFAQEWEVDM 80 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~t~~-~li~~~~~~g~~~~ 80 (86)
+++-+.|...+|++-+..-.+.- |.+-||--|-+.|-+-.+.+.|..+|.+-.+ |..+||- .+-..+-..++.++
T Consensus 231 kCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 34556778888887777666553 4455666677888888888888888876542 5444443 23344555556666
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|.+++
T Consensus 309 a~~lY 313 (478)
T KOG1129|consen 309 ALQLY 313 (478)
T ss_pred HHHHH
Confidence 65554
No 171
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=84.73 E-value=2.1 Score=31.71 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=53.2
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 20 CLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 20 ~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.++....++.|+.+|..|.-+..++|+++.+-+.|++... .....|+.+-..|.-+|.-..|..+.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHH
Confidence 3444456888999999999999999999999999997542 34567888888888888877777654
No 172
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.68 E-value=1.6 Score=31.05 Aligned_cols=80 Identities=10% Similarity=0.007 Sum_probs=56.9
Q ss_pred hhcCCchhHHHHHHHHHHHHcC-------CchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhc
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGF-------VANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQE 75 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~ 75 (86)
+.+.+++++|.+-|+...+.-= .+-+.+--+++-.--+ +++..|.+++++-.+ +....|-+|-..-.+.
T Consensus 472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQR 550 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 4566788899888888766421 1223333333332233 889999999987765 3567899999999999
Q ss_pred CChhHhhhccC
Q 043594 76 WEVDMCYTFIV 86 (86)
Q Consensus 76 g~~~~a~~~f~ 86 (86)
|++++|+++|+
T Consensus 551 ~~i~eAielFE 561 (606)
T KOG0547|consen 551 GKIDEAIELFE 561 (606)
T ss_pred hhHHHHHHHHH
Confidence 99999999984
No 173
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.10 E-value=2.7 Score=30.48 Aligned_cols=80 Identities=8% Similarity=-0.105 Sum_probs=58.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.|.+.++.|+-.|...+..+ .-+.++...+-..+-+.|+.++|.++|++.. ..|+.+-=-...-+...++.++|
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence 3567788888888888777655 3356677777788889999999999999764 34665544556666777888888
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
+..+
T Consensus 577 l~~L 580 (638)
T KOG1126|consen 577 LQEL 580 (638)
T ss_pred HHHH
Confidence 7665
No 174
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=83.67 E-value=5.2 Score=22.28 Aligned_cols=50 Identities=2% Similarity=-0.048 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCChHHHHHhhcCC--CCC--------ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 35 SSLISFCGKCGENIDVYKMFEKM--PVR--------NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 35 ~~li~~y~~~g~~~~A~~~~~~m--~~~--------~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
++|+.+|... +......+++.= +.+ ...-|..|+.-|...|..++|++++
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll 62 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELL 62 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHH
Confidence 4556666665 444444444421 111 2335889999999999999998876
No 175
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=83.66 E-value=1.3 Score=33.41 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
..-.+-.+|-+.|+.++|..++++..+ | |..+-|-+--.|... ++++|.+
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 444444445555555555555554432 1 333444444444444 4444443
No 176
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.62 E-value=2.6 Score=30.21 Aligned_cols=78 Identities=15% Similarity=0.068 Sum_probs=52.2
Q ss_pred cCCchhHHHHHHHHHHH-HcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 8 STRNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+...+....++|-++.. .+-.+|+-+.+.|==-|--.|.+++|.++|+... +| |...||-|=...+...+-++|+.
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIs 485 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAIS 485 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHH
Confidence 33445566666666644 4544566666666556677888999999888653 35 56778887777777777777765
Q ss_pred cc
Q 043594 84 FI 85 (86)
Q Consensus 84 ~f 85 (86)
-|
T Consensus 486 AY 487 (579)
T KOG1125|consen 486 AY 487 (579)
T ss_pred HH
Confidence 44
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.51 E-value=1.8 Score=27.93 Aligned_cols=55 Identities=7% Similarity=-0.091 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCC--CCCh----hhHHHHHHHHhhcCChhHhhhcc
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMP--VRNV----VSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~----~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...|..-+.-+.+.|++++|...|+.+. .|+. ..+--+-..|...|+.++|...|
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f 203 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYF 203 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3457777776677899999999999886 3543 35556668899999999999876
No 178
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.08 E-value=2.4 Score=17.77 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
.+|..+=..|...|++++|.+.|++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 35566667777778888887777654
No 179
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=82.91 E-value=6.5 Score=26.69 Aligned_cols=48 Identities=6% Similarity=-0.025 Sum_probs=25.2
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
.|++..|.+.++.+.+.+-..-+.+...|..+|...|+.++....+.+
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 355555555555555555444444555555555555555555554443
No 180
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=82.44 E-value=2.6 Score=23.54 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=33.9
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
+.+..+...-.++-..+.+.+ -|..|+..|-..|..++|.+++.+..+
T Consensus 20 llr~~N~C~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 20 LLRLPNYCDLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHccCCcCCHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 333334444444545555554 589999999999999999999987654
No 181
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.38 E-value=2.9 Score=25.00 Aligned_cols=64 Identities=5% Similarity=-0.023 Sum_probs=41.0
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHH---HHHHHHHHHHhcCChHHHHHhhcCCCCCC-hhhHHHHHHHHhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVY---VGSSLISFCGKCGENIDVYKMFEKMPVRN-VVSWTAIIAAFAQE 75 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~t~~~li~~~~~~ 75 (86)
..++.++++.++..|... +|+.. ++...+ +...|++.+|..+|++..+.. ...|..-+.++|-.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 356777888888877553 34433 444333 467889999999999887643 44566655555543
No 182
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.12 E-value=3.9 Score=24.62 Aligned_cols=65 Identities=8% Similarity=-0.071 Sum_probs=42.3
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHH---HHHHHHHHHHhcCChHHHHHhhcCCCCC--ChhhHHHHHHHHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVY---VGSSLISFCGKCGENIDVYKMFEKMPVR--NVVSWTAIIAAFAQ 74 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~t~~~li~~~~~ 74 (86)
-.+.++.+.++.++..+... +|... ++...+ +.+.|++.+|..+|+++.+. ....-..|+.-|.+
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34567888898888888664 34433 444443 47889999999999998753 33333445544443
No 183
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=82.03 E-value=6.9 Score=22.32 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=16.8
Q ss_pred HHHHhhcCCCCC-----ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 49 DVYKMFEKMPVR-----NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 49 ~A~~~~~~m~~~-----~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
++.++|+.|... -..-|...-.-+-+.|++.+|.++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555554321 2223444444455555555555544
No 184
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=81.79 E-value=2.8 Score=28.03 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
+..++++|...|+.||-.+-..||..+++.+..
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 568999999999999999999999999998754
No 185
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=81.06 E-value=4.7 Score=24.17 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=41.9
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
|...|++.+|.+.|........ -|+..+=.+=.+|.+.|+.+.|++.|+..
T Consensus 79 ~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 79 CQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3457899999999999988773 56666666777899999999999999964
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=81.05 E-value=9.9 Score=23.03 Aligned_cols=77 Identities=5% Similarity=-0.057 Sum_probs=45.7
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC---CCCChhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM---PVRNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m---~~~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
..|++++|+.+|..+...++. |..-|-.|=..|=..+.+++|...|.-. ..-|....=-+=..|..-|+.++|.+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 568888888888888776532 2333445555555568888888877632 111222222223456666777777665
Q ss_pred c
Q 043594 85 I 85 (86)
Q Consensus 85 f 85 (86)
|
T Consensus 128 f 128 (165)
T PRK15331 128 F 128 (165)
T ss_pred H
Confidence 4
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=81.05 E-value=9 Score=22.59 Aligned_cols=69 Identities=7% Similarity=-0.091 Sum_probs=47.4
Q ss_pred cCCchhHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC--hhhHHHHHHHHhhcC
Q 043594 8 STRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN--VVSWTAIIAAFAQEW 76 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~--~~t~~~li~~~~~~g 76 (86)
+.|++++|.+.|+.+..+= -+-....-=-|+.+|.+.|++++|...+++... |+ -+-|--.+.|++.-.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 5689999999999887751 122334555688999999999999999998752 32 134555555544433
No 188
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.72 E-value=6.7 Score=20.88 Aligned_cols=45 Identities=13% Similarity=-0.047 Sum_probs=30.5
Q ss_pred cCCchhHHHHHHHHHHHHcCCc-hH-HHHHHHHHHHHhcCChHHHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVA-NV-YVGSSLISFCGKCGENIDVYK 52 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~-~~-~~~~~li~~y~~~g~~~~A~~ 52 (86)
....-.+|...|....+.-..| +- .+...++.+|+.-|+++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776654433 32 277778888888888877765
No 189
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.37 E-value=3.3 Score=27.29 Aligned_cols=73 Identities=8% Similarity=0.097 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHH-HcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC-----CCChhhHHHHHHHHhhcCChhHhhhc
Q 043594 12 IRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-----VRNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 12 ~~~a~~~~~~m~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
...-.++...+.. .|-.++..+.-.+|..+++.+++.+-.++++.-. ..|.-.|...|..-...||..-...+
T Consensus 182 l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 182 LNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred hhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 3444556666654 3567888899999999999999999999988653 24788999999999999998655443
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=80.13 E-value=6.7 Score=30.38 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=33.4
Q ss_pred CCchhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 9 TRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
+++..++..-|....+ ..| |...|..+..+|.++|++..|.++|++...
T Consensus 575 a~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred ccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 3444444443333333 334 566889999999999999999999987764
No 191
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.44 E-value=5.1 Score=28.14 Aligned_cols=51 Identities=10% Similarity=-0.021 Sum_probs=39.5
Q ss_pred CCchhHHHHHHHHHHH-HcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 9 TRNIRGGTQYQCLAVR-SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
.++-..+-+.+..+.+ .-++.|+....++-+.|...|+.++|...|++...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 3444455555555544 45788899999999999999999999999998654
No 192
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=79.41 E-value=12 Score=26.24 Aligned_cols=75 Identities=5% Similarity=-0.017 Sum_probs=52.2
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHH-HHHHhcCChHHHHHhhcCCCC-------CChhhHHHHHHHHhhcCChhH
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLI-SFCGKCGENIDVYKMFEKMPV-------RNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~y~~~g~~~~A~~~~~~m~~-------~~~~t~~~li~~~~~~g~~~~ 80 (86)
....+.++++...+.++ -|+...|.-.- ..+...|++++|.+.|++... -....+--+...+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45678888888888775 58887776666 344457999999999996432 123334445556777788888
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|.+.|
T Consensus 324 A~~~f 328 (468)
T PF10300_consen 324 AAEYF 328 (468)
T ss_pred HHHHH
Confidence 87665
No 193
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.81 E-value=3.9 Score=26.88 Aligned_cols=70 Identities=6% Similarity=-0.094 Sum_probs=49.9
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCC---ChhhHHHHHHHHhhcCCh
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR---NVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~t~~~li~~~~~~g~~ 78 (86)
-.+.+..|.-+|.+|-.. ..|++.+.|=..-.+...|++++|..++++.-.+ |..|..-+|..-...|..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 345588899999999652 5688888888888889999999999999987543 344444444444444443
No 194
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=78.08 E-value=8.4 Score=20.51 Aligned_cols=63 Identities=8% Similarity=0.089 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHh
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a 81 (86)
...++.++.+.|+--.. -.=..-+...+.+.|.++.+-.+.+...+|.+..++.-..|..+-|
T Consensus 18 ~~~v~~~L~~~~Vlt~~----~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTPD----MIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCHH----HHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 45677888777742221 2222334567789999999999999999999999999888876544
No 195
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=78.07 E-value=3.2 Score=30.72 Aligned_cols=26 Identities=8% Similarity=0.280 Sum_probs=18.2
Q ss_pred CC-hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 60 RN-VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 60 ~~-~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
|| ..+||.+=.+|.+.|+-.+|...+
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 53 456888888888887777776544
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=77.97 E-value=4.6 Score=28.72 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHhhcCCCCC---ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVR---NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 28 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+-|..+|=.||.-|...|..++.++++++|..| -..+|.--|++=...++++....+|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf 99 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLF 99 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHH
Confidence 446779999999999999999999999999875 2356777777766666666555544
No 197
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=77.94 E-value=12 Score=28.69 Aligned_cols=53 Identities=8% Similarity=-0.053 Sum_probs=46.5
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+|.+.|+.+++.++|+++.+.. .-|+.+.|-+-..|+.. ++++|.+++.+..
T Consensus 124 ~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 124 EAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 45667899999999999999988 66788999999999999 9999999988643
No 198
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.74 E-value=4.1 Score=16.78 Aligned_cols=24 Identities=21% Similarity=0.067 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCC
Q 043594 34 GSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 34 ~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
+..+=..|.+.|++++|.+.|++.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344445677788888888887754
No 199
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=77.58 E-value=5 Score=28.97 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC-hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN-VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 28 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.-|.-+|+.||.-+... .++++++.++++.. |. ...|..-|.+-.+.++++....+|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF 76 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLF 76 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34677999999877666 89999999998864 53 467888888888888888888776
No 200
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.16 E-value=6.1 Score=18.42 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=14.5
Q ss_pred cchhcCCchhHHHHHHHHHHHHc
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSG 26 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g 26 (86)
.+|...|+.+.|++++.++...|
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHcCChHHHHHHHHHHHHcC
Confidence 45566667777777776666543
No 201
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.75 E-value=2 Score=30.53 Aligned_cols=75 Identities=13% Similarity=0.015 Sum_probs=46.7
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC-hhhHHHHHHHHhhcCChhHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPV--RN-VVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~t~~~li~~~~~~g~~~~a 81 (86)
|-++|.+++|.+.+...+.. .|| ++-|+..-.+|..-|++++..+---+-.+ |+ +-.+.-=-+++=+-|++++|
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHH
Confidence 44567777777777776664 366 66777777777777777766654433322 33 33444445666666666666
Q ss_pred h
Q 043594 82 Y 82 (86)
Q Consensus 82 ~ 82 (86)
+
T Consensus 203 l 203 (606)
T KOG0547|consen 203 L 203 (606)
T ss_pred H
Confidence 5
No 202
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=76.08 E-value=4.6 Score=25.43 Aligned_cols=56 Identities=9% Similarity=-0.072 Sum_probs=42.3
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcC--------------CchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGF--------------VANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~--------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
++-.|.+.-.+.+++++++.|-+..+ .+--.+.|.-...+.++|.++.|..++++=
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 34456666678888888887765433 344568889999999999999999999864
No 203
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.91 E-value=10 Score=27.19 Aligned_cols=75 Identities=8% Similarity=0.105 Sum_probs=51.8
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC---------------------C---------
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM---------------------P--------- 58 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m---------------------~--------- 58 (86)
.|++++|.+.+.+.....-......||+=+. |-+.|++++|.++|-.. .
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5788888888888877665555666665554 45678888888877643 0
Q ss_pred ------CC-ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 59 ------VR-NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 59 ------~~-~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
-| |....+-|-.-|-+.|+-..|++.
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 13 455667777788888888877754
No 204
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.29 E-value=5.1 Score=16.60 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
+|..+=..|...|+.++|.+.|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555677778888888887775
No 205
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.22 E-value=12 Score=27.05 Aligned_cols=70 Identities=9% Similarity=0.018 Sum_probs=56.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhc
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQE 75 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~ 75 (86)
++.+.+..++|...+....... +-|+.+++++=-.|...|.++.|.+.|.+-- .||-.+-+.|++-+...
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 4567778888888888877654 5578889999899999999999999999754 68887888888766654
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.08 E-value=11 Score=25.15 Aligned_cols=52 Identities=8% Similarity=0.051 Sum_probs=33.3
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHH-----HHhcCChHHHHHhhcCCCC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISF-----CGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-----y~~~g~~~~A~~~~~~m~~ 59 (86)
+.|++..|+..|+++.|..-..|....+.++.. |.-+.++.+|...|++++.
T Consensus 224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc
Confidence 467777777788777776555555555555543 3334666677777766654
No 207
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=74.67 E-value=7.4 Score=27.23 Aligned_cols=71 Identities=10% Similarity=-0.036 Sum_probs=49.3
Q ss_pred hcCCchhHHHHHHHHHHHH---cCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHh
Q 043594 7 GSTRNIRGGTQYQCLAVRS---GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.|++..|.+.+.+-+.. +..|+...|-..-....+.|++++|..--++...-|. +.|.+|.+.++...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~----syikall~ra~c~l~ 333 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS----SYIKALLRRANCHLA 333 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH----HHHHHHHHHHHHHHH
Confidence 4678899999999888764 4666677777777777888999999887776555443 345555555444433
No 208
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=74.55 E-value=6.4 Score=23.40 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=29.4
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISF 40 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 40 (86)
+-..|-+.+.+++.++|.+.||.....+++-++.-
T Consensus 119 ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 119 AKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 44568888999999999999999999888877754
No 209
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.38 E-value=6.7 Score=27.85 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=42.2
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C----ChhhHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R----NVVSWTAI 68 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~~~t~~~l 68 (86)
+......+++.+=.......|+..+...-+-.-..+-...+++.|..+|+++.. | |..+|+-+
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 333445566666667777778877777666666666777889999999998753 3 45555543
No 210
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=73.07 E-value=19 Score=26.97 Aligned_cols=76 Identities=7% Similarity=-0.063 Sum_probs=45.0
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
.+|++..|..++.......= .+.-+|=+-+..-+....++.|+.+|.+.. .|..-.|.-=+.----.+.+++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 45777777777777766542 244567777777777777777777777654 24444443333333333444555443
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=72.95 E-value=26 Score=24.67 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=48.8
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHh--cCChHHHHHhhcCCC----------------------------
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK--CGENIDVYKMFEKMP---------------------------- 58 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~m~---------------------------- 58 (86)
+|+-..|.++-.+-.+. +..|..-.--|+.+-.. .|+.++|++-|+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 45666665554433221 34444444445544433 588999999998882
Q ss_pred --------CCCh-hhHHHHHHHHhhcCChhHhhhcc
Q 043594 59 --------VRNV-VSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 59 --------~~~~-~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.|.. -.|.+.+..-+..|+|+.|+++.
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 1221 25778999999999999999875
No 212
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=72.87 E-value=30 Score=24.86 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=49.7
Q ss_pred hcCCchhHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CC--hhhHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSG-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RN--VVSWTAIIA 70 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~--~~t~~~li~ 70 (86)
-+.|..++|.+.+.+|.+.. ...+..+.-.||.++...+++.+++.++++-.+ |. ..+||..+-
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 36799999999999998754 333556888999999999999999999887542 33 356777553
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=72.84 E-value=15 Score=27.19 Aligned_cols=79 Identities=11% Similarity=-0.034 Sum_probs=53.2
Q ss_pred hcCCchhHHHHHHHHHHHHcCCch----HHHHHHHHHHHHhcCChHHHHHhhcCCCC-------CC--hhhHHHHHHHHh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVAN----VYVGSSLISFCGKCGENIDVYKMFEKMPV-------RN--VVSWTAIIAAFA 73 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~~--~~t~~~li~~~~ 73 (86)
...|++++|...+.+..+.--..+ ....+.+-..+...|++++|...+++... +. ..+++.+-..+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 357889999998888766311112 13445555667789999999998887641 22 234455566788
Q ss_pred hcCChhHhhhcc
Q 043594 74 QEWEVDMCYTFI 85 (86)
Q Consensus 74 ~~g~~~~a~~~f 85 (86)
..|++++|.+.+
T Consensus 543 ~~G~~~~A~~~~ 554 (903)
T PRK04841 543 AQGFLQAAYETQ 554 (903)
T ss_pred HCCCHHHHHHHH
Confidence 899999997654
No 214
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.43 E-value=27 Score=27.70 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=34.6
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
++..+++.|.+++....+....+..-+| .+=+.||-+|++-+++.+-+++...
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~g 1191 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIAG 1191 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhcC
Confidence 3556667777777776666555555444 3456777788888887777766653
No 215
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.23 E-value=11 Score=27.08 Aligned_cols=79 Identities=11% Similarity=-0.058 Sum_probs=59.7
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC-hhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN-VVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~-~~t~~~li~~~~~~g~~~~a~ 82 (86)
....|+++.|..+|.+.+... ++|.+.|+.-..+|.+.|++++|.+==.+.. .|+ .--|+-.=.+..--|++++|+
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 346799999999999887765 3488899999999999999998877544433 243 345666666777778888887
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
.-|
T Consensus 91 ~ay 93 (539)
T KOG0548|consen 91 LAY 93 (539)
T ss_pred HHH
Confidence 654
No 216
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.90 E-value=9.9 Score=24.95 Aligned_cols=74 Identities=11% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhhh
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
.|+.++|.++++.+.... +.|..++--=|-..-..|+.-+|.+-+.+--+ -|...|.-+-..|..-|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 355666666666665554 33444444333333344444444443333221 266777777777777777777753
No 217
>PRK04841 transcriptional regulator MalT; Provisional
Probab=71.02 E-value=27 Score=25.94 Aligned_cols=80 Identities=5% Similarity=-0.081 Sum_probs=52.5
Q ss_pred hhcCCchhHHHHHHHHHHHH----cCC--c-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC------C--ChhhHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRS----GFV--A-NVYVGSSLISFCGKCGENIDVYKMFEKMPV------R--NVVSWTAIIA 70 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~--~~~t~~~li~ 70 (86)
+...|++++|.+.+.+.... |.. + ...++..+-..+...|++++|...+++... + ...++..+-.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 34578999999888876553 221 1 233444555667778999999988886531 1 1234444556
Q ss_pred HHhhcCChhHhhhcc
Q 043594 71 AFAQEWEVDMCYTFI 85 (86)
Q Consensus 71 ~~~~~g~~~~a~~~f 85 (86)
.+...|+.++|.+.+
T Consensus 621 ~~~~~G~~~~A~~~l 635 (903)
T PRK04841 621 ISLARGDLDNARRYL 635 (903)
T ss_pred HHHHcCCHHHHHHHH
Confidence 788899999887654
No 218
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.26 E-value=21 Score=21.51 Aligned_cols=16 Identities=0% Similarity=-0.197 Sum_probs=7.6
Q ss_pred CCchhHHHHHHHHHHH
Q 043594 9 TRNIRGGTQYQCLAVR 24 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~ 24 (86)
.|++.+|.++++.+..
T Consensus 57 r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 57 RGDWDDALRLLRELEE 72 (160)
T ss_pred hCCHHHHHHHHHHHhc
Confidence 3445555555555433
No 219
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=70.16 E-value=6 Score=26.34 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=24.8
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHc-CCchHHHHHHH
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSG-FVANVYVGSSL 37 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~l 37 (86)
+++.|.+.|.+++|.+++.+..+.. -.|+..+...+
T Consensus 112 Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 112 LMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 6778888888888888888886643 34554444433
No 220
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.07 E-value=32 Score=25.28 Aligned_cols=75 Identities=5% Similarity=0.049 Sum_probs=39.1
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHH---HHhhcCChhHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA---AFAQEWEVDMC 81 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~---~~~~~g~~~~a 81 (86)
|-+.+++++|..+|.++.+.+..- |.-.-..++..-.. -.+. +.+..++.-..||..+.+ .++..|++.+|
T Consensus 120 lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 120 LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 456677888888888887766422 22222222222111 1111 233333322334444442 35678899999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
++++
T Consensus 195 ~elL 198 (652)
T KOG2376|consen 195 IELL 198 (652)
T ss_pred HHHH
Confidence 8875
No 221
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=70.01 E-value=22 Score=21.55 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
+...-+.+.++.|+..++..+|+.+.+.|+...-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 455556677999999999999999999999887777665
No 222
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.88 E-value=7.8 Score=27.94 Aligned_cols=77 Identities=4% Similarity=-0.076 Sum_probs=60.7
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC-hhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN-VVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~-~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
-.|.+++|..-|...+... +-|..+||-|=...+...+.++|...|.+.. +|+ +-++.-|=-.|..-|.+++|.+.
T Consensus 442 ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred cchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 3578889988888887753 3366799999999999999999999999875 465 44665666678889999998865
Q ss_pred c
Q 043594 85 I 85 (86)
Q Consensus 85 f 85 (86)
|
T Consensus 521 l 521 (579)
T KOG1125|consen 521 L 521 (579)
T ss_pred H
Confidence 4
No 223
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=69.60 E-value=7.3 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=30.4
Q ss_pred CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 043594 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC 44 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~ 44 (86)
.+..+++|+-.+-+-.-++|...+|.+|+.+|++.
T Consensus 539 knkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 539 KNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred echhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 45678888888887778899999999999999985
No 224
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=69.60 E-value=9.1 Score=21.02 Aligned_cols=48 Identities=4% Similarity=-0.110 Sum_probs=35.9
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHH
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID 49 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~ 49 (86)
++......+..-.|.++++.+.+.+...+..|.=-.|+.+...|-+.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 345555556667899999999998877777777777788888887653
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=69.54 E-value=8.6 Score=27.27 Aligned_cols=44 Identities=9% Similarity=-0.128 Sum_probs=33.5
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCC----chHHHHHHHHHHHHhcCCh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFV----ANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~y~~~g~~ 47 (86)
.+.-..|.+++|+.+..+|...=++ .+.-+||-++-+++++=-+
T Consensus 136 ~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfL 183 (549)
T PF07079_consen 136 HSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFL 183 (549)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHH
Confidence 4455789999999888888765444 8889999988888875433
No 226
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=69.41 E-value=16 Score=19.80 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
++|+.....|+..|+.+|..+++-.--+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 789989999999999999999998877777777777887775
No 227
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.89 E-value=17 Score=19.76 Aligned_cols=68 Identities=4% Similarity=0.086 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhh
Q 043594 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 14 ~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+..+++..+...|+--+ --...+-..-...|+.+.|+++.+..+ +..-.|+..+++.-..|.-+-|-+
T Consensus 20 ~~~~v~d~ll~~~ilT~-~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGLLTE-EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCCCCH-HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 35577788877774222 222222222235699999999999999 788888999999998887766544
No 228
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.52 E-value=12 Score=25.76 Aligned_cols=57 Identities=5% Similarity=-0.024 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.|..=-+-|=++|.+-|.+++|.+.|++-. .|-+.||--|-..|.+-.+++.|+.+|
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~ 279 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVI 279 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHH
Confidence 344444556788999999999999998653 477889999999999999999998876
No 229
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=67.86 E-value=0.73 Score=24.69 Aligned_cols=25 Identities=16% Similarity=-0.015 Sum_probs=13.0
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 23 VRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 23 ~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
++-.+..+..+|.+.|++|+|.|.+
T Consensus 16 ~QYeLsk~~~vyRvFiNgYar~g~V 40 (88)
T PF11491_consen 16 KQYELSKNEAVYRVFINGYARNGFV 40 (88)
T ss_dssp HHHTTTTTTTB------TTSS--EE
T ss_pred HHHHhhcccceeeeeecccccceEE
Confidence 4456677888999999999999865
No 230
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.85 E-value=16 Score=20.58 Aligned_cols=56 Identities=7% Similarity=0.030 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHH
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIA 70 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~ 70 (86)
..+-+..+....+-|++.+..+.+.++-|-.++.-|..+|+.+.. +....|.-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 344445555567889999999999999999999999999997752 22226666554
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=67.75 E-value=8.8 Score=27.23 Aligned_cols=68 Identities=7% Similarity=0.063 Sum_probs=49.8
Q ss_pred cCCchhHHHHHHHHHHHH--cCC------------chHHHHHHHHHHHHhcCChHHHHHhhcCCCC--------CChhhH
Q 043594 8 STRNIRGGTQYQCLAVRS--GFV------------ANVYVGSSLISFCGKCGENIDVYKMFEKMPV--------RNVVSW 65 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~--g~~------------~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~~~t~ 65 (86)
+.+..++|.+.+...... +-+ +|-+.-+...++....|++.+++.++++|.+ =|+.+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567788888888877655 322 3455567778888999999999999999853 267788
Q ss_pred HHHHHHHhhc
Q 043594 66 TAIIAAFAQE 75 (86)
Q Consensus 66 ~~li~~~~~~ 75 (86)
|.++-.++|.
T Consensus 171 d~~vlmlsrS 180 (549)
T PF07079_consen 171 DRAVLMLSRS 180 (549)
T ss_pred HHHHHHHhHH
Confidence 8866555553
No 232
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.68 E-value=22 Score=22.35 Aligned_cols=49 Identities=18% Similarity=0.012 Sum_probs=39.7
Q ss_pred cchhcCCchhHHHHHHHHHHHH---cCCchHHHHHHHHHHHHhcCChHHHHH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRS---GFVANVYVGSSLISFCGKCGENIDVYK 52 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~y~~~g~~~~A~~ 52 (86)
..|--..+.+++.+++-+.... +-.+|+-++.+|.+.|-+.|+.+.|.-
T Consensus 148 AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 148 ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 3444567889999998888764 347899999999999999999998863
No 233
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=67.27 E-value=26 Score=26.80 Aligned_cols=78 Identities=10% Similarity=0.136 Sum_probs=60.7
Q ss_pred cCCchhHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhcCChHHHHHhhcCCCC----CChhhHHHHHHHHhhcCChhHh
Q 043594 8 STRNIRGGTQYQCLAVRSGF--VANVYVGSSLISFCGKCGENIDVYKMFEKMPV----RNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~t~~~li~~~~~~g~~~~a 81 (86)
+....+..+-+........+ .-++-.+--+.++|...|++.+|..+|..+.. .+...|--+-..|-.-|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 33444555556666666663 33556888999999999999999999998863 2677898888999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 469 ~e~y 472 (895)
T KOG2076|consen 469 IEFY 472 (895)
T ss_pred HHHH
Confidence 8876
No 234
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.26 E-value=6.4 Score=27.13 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=28.4
Q ss_pred HHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhH
Q 043594 40 FCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 40 ~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~ 80 (86)
-|.+.|.+++|.++|..-. .| |.+++.---.+|.+...+-.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~ 149 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQ 149 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHH
Confidence 4778899999999887543 35 67777666666666655443
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=67.13 E-value=26 Score=21.35 Aligned_cols=52 Identities=8% Similarity=-0.100 Sum_probs=37.1
Q ss_pred hcCCchhHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 7 GSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
-..|++.+|.+.|..+...- -+.-....=-+..+|.+.|++++|...|++..
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46799999999999998752 11222233456688899999999999999874
No 236
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.10 E-value=6.5 Score=14.79 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
.+..+-..|...|++++|...|++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445556677778888888777654
No 237
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=67.03 E-value=16 Score=21.05 Aligned_cols=38 Identities=3% Similarity=0.031 Sum_probs=21.0
Q ss_pred HHHHhhcCCCCCChhh-----HHHHHHHHhhcCChhHhhhccC
Q 043594 49 DVYKMFEKMPVRNVVS-----WTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 49 ~A~~~~~~m~~~~~~t-----~~~li~~~~~~g~~~~a~~~f~ 86 (86)
+..++|.-|....+-+ |...-.-+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556666665443332 3333444556677777777663
No 238
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=66.85 E-value=11 Score=28.15 Aligned_cols=53 Identities=4% Similarity=-0.070 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCC--CChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPV--RNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
-|.-.|.+|+..|+..+|..+..+-.+ ||..-|..+-+.-..---+++|.+++
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawEls 480 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELS 480 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHh
Confidence 455566677777777777776654332 45555555545444444445555443
No 239
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=66.30 E-value=30 Score=21.94 Aligned_cols=54 Identities=9% Similarity=-0.055 Sum_probs=40.5
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
.+....|+..+|...|.+-...-+.-|.-..-.+-.+...-++...|...++..
T Consensus 97 ~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 455677888888888888777667777777777777777778888887777754
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=66.14 E-value=5.9 Score=23.99 Aligned_cols=44 Identities=9% Similarity=-0.074 Sum_probs=33.5
Q ss_pred HhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 42 GKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 42 ~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...|++++|..+|.-.. .| |.--|..|=..|-..++.++|++.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y 94 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLY 94 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999654 33 4445677777788888898888765
No 241
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=66.11 E-value=7.4 Score=19.37 Aligned_cols=20 Identities=5% Similarity=-0.086 Sum_probs=8.8
Q ss_pred hcchhcCCchhHHHHHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLA 22 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m 22 (86)
|.++...|++++|.+....+
T Consensus 30 I~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 34444444444444444444
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.08 E-value=14 Score=25.85 Aligned_cols=42 Identities=5% Similarity=0.090 Sum_probs=28.2
Q ss_pred HhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 42 GKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 42 ~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.++|+++.|.++-++. ++...|..|=+...+.|+++-|.+.|
T Consensus 329 l~lg~L~~A~~~a~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL--DDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp HHCT-HHHHHHHCCCC--STHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HhcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444444433 35678999999999999998887765
No 243
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=65.82 E-value=25 Score=23.25 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=7.9
Q ss_pred cCCchhHHHHHHHHHHH
Q 043594 8 STRNIRGGTQYQCLAVR 24 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~ 24 (86)
..|+++.|..-|....+
T Consensus 168 ~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 168 ALGRASDALLAYRNALR 184 (287)
T ss_pred HhcchhHHHHHHHHHHH
Confidence 34444555544444433
No 244
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=65.60 E-value=22 Score=19.86 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHH
Q 043594 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIA 70 (86)
Q Consensus 14 ~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~ 70 (86)
+..+-+..+....+-|++.+..+-+.++-|-.++.-|..+|+..+. .+...|.-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 4555566666778899999999999999999999999999997652 23345665554
No 245
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.59 E-value=4.8 Score=16.39 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=11.3
Q ss_pred hcCCchhHHHHHHHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRS 25 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~ 25 (86)
.+.|+.++|.+++.++++.
T Consensus 11 ~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 11 YKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 3456666666666666543
No 246
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=65.49 E-value=14 Score=26.11 Aligned_cols=43 Identities=5% Similarity=0.026 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
--++|.++.+..+.||.+++.-+-..|.+.=-++-|-.+++-.
T Consensus 458 lp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy 500 (586)
T KOG2223|consen 458 LPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVY 500 (586)
T ss_pred cHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhhee
Confidence 3478999999999999999999999999998888888877743
No 247
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.17 E-value=12 Score=25.21 Aligned_cols=45 Identities=7% Similarity=0.026 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCCh
Q 043594 34 GSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 34 ~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~ 78 (86)
.+..-+.|..+|.+.+|.++-+.... -+...|-.|+..+...||-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 33344556666666666666655432 2445555666666666653
No 248
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.36 E-value=5.7 Score=23.38 Aligned_cols=31 Identities=6% Similarity=-0.099 Sum_probs=23.4
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISF 40 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 40 (86)
+.|.-..|-.+|..|+++|-.||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 346667788999999999988874 6666653
No 249
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=64.23 E-value=17 Score=27.08 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 62 VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 62 ~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..-|++|-+-|.+.|.+++|.++|
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 357999999999999999999886
No 250
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=64.10 E-value=4 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=21.3
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVG 34 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~ 34 (86)
+........++..++...||.++-.+|
T Consensus 46 ~N~~~~~~~~V~~HL~~~Gf~~~Y~~W 72 (77)
T PF13963_consen 46 KNEKRQSRDDVHEHLVCRGFMPNYTVW 72 (77)
T ss_pred ccCccCCHHHHHHHHHHhCCCCCCCee
Confidence 344557888999999999999976554
No 251
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.60 E-value=41 Score=22.37 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=30.4
Q ss_pred hcchhcCCchhHHHHHHHHHHHH-cCCchHHHHHHHHHHHHhcCChHHHHHhhc
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRS-GFVANVYVGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
|..+++.++++.-.++|..-... +...|.+.|..+|+.-.+.|+..-.+++.+
T Consensus 209 l~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 209 LEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 44555566666665555555444 445566666666666666666655555554
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=63.32 E-value=17 Score=21.65 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
-++.-++...+.|+-+.-.++..+.. +++....--+-++|.+-|+..++-+++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 44555666777777777777777653 466666677779999999999887764
No 253
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=63.12 E-value=25 Score=26.51 Aligned_cols=75 Identities=11% Similarity=0.048 Sum_probs=56.3
Q ss_pred CchhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHH--hhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 10 RNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYK--MFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~--~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
|...+|++.|..... +.| ++.+.+++-.++.+-|+..-|.+ +..++.. | |...|--+=..+-+.|+.++|.+
T Consensus 698 ~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 455666665554443 445 45588899999999998888887 7777753 3 67889999899999999999988
Q ss_pred ccC
Q 043594 84 FIV 86 (86)
Q Consensus 84 ~f~ 86 (86)
.|+
T Consensus 776 cf~ 778 (799)
T KOG4162|consen 776 CFQ 778 (799)
T ss_pred HHH
Confidence 773
No 254
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=63.09 E-value=23 Score=21.34 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=52.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHH--HHHHHHHHHHhcCChHHHHHhhcCCCC----C-C------hhhHHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVY--VGSSLISFCGKCGENIDVYKMFEKMPV----R-N------VVSWTAIIAA 71 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~~----~-~------~~t~~~li~~ 71 (86)
=+.+.|+.+.|.+.+.++......+... .+=.+|....-.|++..+....++... + | ..+|..|-
T Consensus 45 ~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~-- 122 (177)
T PF10602_consen 45 HYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA-- 122 (177)
T ss_pred HHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH--
Confidence 3678899999999999998876655444 556777777778888777777665431 1 1 12233332
Q ss_pred HhhcCChhHhhhcc
Q 043594 72 FAQEWEVDMCYTFI 85 (86)
Q Consensus 72 ~~~~g~~~~a~~~f 85 (86)
+...|++.+|-+.|
T Consensus 123 ~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 123 NLAQRDFKEAAELF 136 (177)
T ss_pred HHHhchHHHHHHHH
Confidence 33456777776655
No 255
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=62.91 E-value=24 Score=22.42 Aligned_cols=49 Identities=10% Similarity=-0.101 Sum_probs=33.2
Q ss_pred cCCchhHHHHHHHHHHHHcCCchH-HHHH---HHHHHHHhcCChHHHHHhhcCCC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANV-YVGS---SLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~-~~~~---~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
+.|++++|.+.|+.+...- |+. ..-. -+..+|.+.+++++|...|++..
T Consensus 44 ~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3578888888888887743 322 2222 23466778888888888888764
No 256
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=62.70 E-value=22 Score=19.05 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHh
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a 81 (86)
...++.++...|+-.+.. +. ...+..-+.+.+.++++-.+.+...+|.++..++-..|..+-|
T Consensus 22 ~~~v~~~L~~~gvlt~~~-~~---~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~La 84 (90)
T cd08332 22 LDELLIHLLQKDILTDSM-AE---SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEHLC 84 (90)
T ss_pred HHHHHHHHHHcCCCCHHH-HH---HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHHHH
Confidence 445777777777533222 11 2223446779999999999999999999999999776655443
No 257
>COG5210 GTPase-activating protein [General function prediction only]
Probab=61.34 E-value=20 Score=25.19 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
..+++.++.+.|+.+..+++.-++..+.+...++.|..+++-+
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~l 403 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCL 403 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999865
No 258
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=60.51 E-value=23 Score=19.29 Aligned_cols=21 Identities=5% Similarity=-0.094 Sum_probs=12.1
Q ss_pred hcchhcCCchhHHHHHHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLAV 23 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~ 23 (86)
|..|...+++++|.+-+.++.
T Consensus 9 l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 9 IEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHcCCHHHHHHHHHHhC
Confidence 344555666666666655553
No 259
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.09 E-value=7.4 Score=25.85 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.3
Q ss_pred CChhh-HHHHHHHHhhcCChhHhhhcc
Q 043594 60 RNVVS-WTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 60 ~~~~t-~~~li~~~~~~g~~~~a~~~f 85 (86)
||..+ ||.-|..-.+.||+++|+.+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~Ll 280 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLL 280 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45444 689999999999999999875
No 260
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=59.55 E-value=52 Score=24.48 Aligned_cols=77 Identities=6% Similarity=-0.016 Sum_probs=44.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVY-VGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~ 80 (86)
-+-+.|+++.|....+.... ..|+.+ .|-+=-.++...|.+++|...+++..+ ||...=+--..-..+.+..++
T Consensus 380 h~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHH
Confidence 34566777777777665543 345444 444444677888888888888887654 343311112223345566666
Q ss_pred hhh
Q 043594 81 CYT 83 (86)
Q Consensus 81 a~~ 83 (86)
|.+
T Consensus 458 A~~ 460 (700)
T KOG1156|consen 458 AEE 460 (700)
T ss_pred HHH
Confidence 554
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=59.22 E-value=9.6 Score=22.72 Aligned_cols=51 Identities=8% Similarity=0.017 Sum_probs=33.5
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
.+..|+++.|.+.|......- +-.+..||.--.+|--.|+.++|.+=+++-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 456677777777777665432 234567777777777777777777766654
No 262
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.13 E-value=35 Score=25.07 Aligned_cols=50 Identities=6% Similarity=-0.071 Sum_probs=30.8
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
-+.+.+++++|.+....+...+ +-|...+..=+=+....+++++|..+.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik 70 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK 70 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH
Confidence 3456677778887777777766 3334444444445566666666665554
No 263
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.12 E-value=16 Score=21.99 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=24.0
Q ss_pred CCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 59 VRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 59 ~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.|+..+|..++..+...|+.++|.+..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~ 167 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWL 167 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 489999999999999999999997653
No 264
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=59.09 E-value=53 Score=25.66 Aligned_cols=69 Identities=6% Similarity=0.023 Sum_probs=39.7
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCC-hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN-VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..|.+++|++++.+..+.. .|=+.|-..|.+++|.++-+.-..-. -.||.---.-+-..+|++.|++.|
T Consensus 812 eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3567778888887776643 33355667788888887766422111 123333333344456666666655
No 265
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=58.67 E-value=6.6 Score=20.01 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=31.5
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
-.++.+.+.++..+..+.|+.|.......+.-+.-+-|+.
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999889999888888888777665544
No 266
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=57.72 E-value=53 Score=21.78 Aligned_cols=60 Identities=12% Similarity=-0.039 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CChhhHHHHHHH
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RNVVSWTAIIAA 71 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~t~~~li~~ 71 (86)
+-.++.++++++.+.. +-|+..-.-|-..+...|++.+|...|+.|-. |.-..|.++|..
T Consensus 208 ~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 208 MTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred ccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 3457778888887753 23444455555777888888888888888863 555667766654
No 267
>PF13934 ELYS: Nuclear pore complex assembly
Probab=57.42 E-value=46 Score=20.96 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=23.5
Q ss_pred HHHHHHhcCChHHHHHhhcCCCCCChhh---HHHHHHHHhhcCChhHhhh
Q 043594 37 LISFCGKCGENIDVYKMFEKMPVRNVVS---WTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 37 li~~y~~~g~~~~A~~~~~~m~~~~~~t---~~~li~~~~~~g~~~~a~~ 83 (86)
++....+.|+.+-|..++..+.. ...+ -+.++.. ..++.+.||+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p-~l~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP-PLSSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC-CCCCHHHHHHHHHH-HHcCCHHHHHH
Confidence 55555556777777777765442 2222 2222333 55566666654
No 268
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.38 E-value=13 Score=14.71 Aligned_cols=29 Identities=10% Similarity=-0.079 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHHHHcCCchHHHHHHHHH
Q 043594 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLIS 39 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 39 (86)
|+.+.+..+|..+.+.. ..+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45667777777776543 244555554443
No 269
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=56.99 E-value=11 Score=21.58 Aligned_cols=19 Identities=5% Similarity=-0.171 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCCchHH
Q 043594 14 GGTQYQCLAVRSGFVANVY 32 (86)
Q Consensus 14 ~a~~~~~~m~~~g~~~~~~ 32 (86)
--..+.++|.++|.+||..
T Consensus 53 yH~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 53 YHLLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHHHcCCCCChh
Confidence 3457889999999999883
No 270
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.65 E-value=42 Score=22.43 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=40.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWT 66 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~ 66 (86)
++++.|..+.|.+=....++ +.|+ ...|..|=.+|...|++++|.+.|+.-. +|+-.+|=
T Consensus 124 Ay~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 124 AYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHH
Confidence 56667777666544333333 3343 4488888899999999999999998765 46555543
No 271
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=56.62 E-value=17 Score=21.83 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc
Q 043594 16 TQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 16 ~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
.+++.++.+.|+.+....++-++..++++=..+.+..+||
T Consensus 149 P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD 188 (214)
T PF00566_consen 149 PELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD 188 (214)
T ss_dssp HHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH
Confidence 4688888888999999999999999998888889999998
No 272
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=56.08 E-value=11 Score=29.28 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=24.3
Q ss_pred CChhhHHHHHHHHhhcCChhHhhhccC
Q 043594 60 RNVVSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 60 ~~~~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
.|.-.|..+-.+|.++|....|.++|+
T Consensus 594 kD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 594 KDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred hhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 377899999999999999999999883
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=55.35 E-value=41 Score=20.15 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=35.3
Q ss_pred HHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHhhh
Q 043594 40 FCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 40 ~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+.+..|+++.|.+.|.+-. ..+...||-=-.++--.|+.++|++
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALd 98 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALD 98 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHH
Confidence 4678899999999998753 2367788888888888888888875
No 274
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=54.97 E-value=42 Score=20.03 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=10.2
Q ss_pred ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 61 NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 61 ~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
...+..-++.-+.+.-.++.+.++
T Consensus 166 ~~~~~~W~~~lF~~~~~~~~~~ri 189 (199)
T smart00164 166 SLYALRWFLTLFARELPLEIVLRI 189 (199)
T ss_pred hhHHHHHHHHHHHhhCCHHHHHHH
Confidence 334444444444444444444433
No 275
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=54.64 E-value=12 Score=18.84 Aligned_cols=23 Identities=4% Similarity=0.032 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHHHHc-CCchHH
Q 043594 10 RNIRGGTQYQCLAVRSG-FVANVY 32 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g-~~~~~~ 32 (86)
=+++.|.+.|..+...| +.|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 35778888898887755 666544
No 276
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.45 E-value=38 Score=26.97 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhc----CCCCCChhhHHHHHHHHhhcCChhHhhh
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFE----KMPVRNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~----~m~~~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+..|--+|+...+.|.+++-...+. .+.+|.+. +.||-+|++.+++.+-.+
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHH
Confidence 4445555555555555555554433 22334433 556666666666555443
No 277
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=53.86 E-value=9.7 Score=25.35 Aligned_cols=24 Identities=0% Similarity=0.080 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 62 VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 62 ~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+.---+|++.|.++|.+++|+++.
T Consensus 106 iLElP~Lm~~ci~~g~y~eALel~ 129 (338)
T PF04124_consen 106 ILELPQLMDTCIRNGNYSEALELS 129 (338)
T ss_pred HHhhHHHHHHHHhcccHhhHHHHH
Confidence 333457899999999999999874
No 278
>PLN02789 farnesyltranstransferase
Probab=53.59 E-value=61 Score=21.56 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=10.4
Q ss_pred ChhhHHHHHHHHhhcCChhHhhh
Q 043594 61 NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 61 ~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
|..+|+-.-..+.+.|+++++++
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444444444444444444443
No 279
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.17 E-value=34 Score=18.15 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=31.4
Q ss_pred hcCCchhHH----HHHHHHHHHHcCCch--HHHHH--HHHHHHHhcCChHHHHHhhcCCC
Q 043594 7 GSTRNIRGG----TQYQCLAVRSGFVAN--VYVGS--SLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 7 ~~~~~~~~a----~~~~~~m~~~g~~~~--~~~~~--~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
-+.|++.+| .+.|+.....+..++ ...+. .+-..+...|+.++|.+.+++-.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 356777777 455555444444331 22222 23345667899999999999864
No 280
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=53.08 E-value=59 Score=20.88 Aligned_cols=53 Identities=6% Similarity=-0.046 Sum_probs=35.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcC-----CchHH--HHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGF-----VANVY--VGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+.+.|++++|.++|.++.+... +++.. ..+++ -.+...|++..|.+.|++..
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~-l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI-LCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH-HHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 45678899999999999987543 22332 23343 36677899999999999754
No 281
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.03 E-value=65 Score=21.98 Aligned_cols=50 Identities=8% Similarity=-0.049 Sum_probs=37.4
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHH--HHHHHHHHHHh--cCChHHHHHhhcCC
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVY--VGSSLISFCGK--CGENIDVYKMFEKM 57 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~y~~--~g~~~~A~~~~~~m 57 (86)
-+.+++..|.+++..+.+. +.++.. .+..+..+|-. .-++++|.+.++..
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3678999999999999887 666555 56666677765 56777888877754
No 282
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.99 E-value=46 Score=22.26 Aligned_cols=52 Identities=8% Similarity=-0.015 Sum_probs=38.3
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
....|++.++..+++......=+. .-.--.+...|...|+.+.|..+++.++
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 345788888888888887754222 3344556778888899999999999875
No 283
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=51.57 E-value=53 Score=19.90 Aligned_cols=54 Identities=7% Similarity=-0.047 Sum_probs=29.6
Q ss_pred hhcCCchhHHHHHHHHHHHHc--------CCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCC--ChhhHHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSG--------FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NVVSWTAIIAA 71 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g--------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~t~~~li~~ 71 (86)
|...|+..+..++-+.+.+.+ -..|+.+..++++.| |+++++| ....|..++..
T Consensus 45 FR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~va~lLK~f------------lreLP~PLi~~~~~~~~~~~ 108 (190)
T cd04400 45 FRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLY------------LRELPTLILGGELHNDFKRL 108 (190)
T ss_pred eeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHHHHHHHHHH------------HHhCCcccCCHHHHHHHHHH
Confidence 344566666666666554432 124667777777766 5556654 33444544443
No 284
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=51.06 E-value=48 Score=19.26 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCC-CCChhhHHH-HHHHHhhcCChhHhhh
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMP-VRNVVSWTA-IIAAFAQEWEVDMCYT 83 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~-~~~~~t~~~-li~~~~~~g~~~~a~~ 83 (86)
.+.-++..++.=+|..+.|.++++... .++-...|. ++..|.++.+-++..+
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~ 120 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIE 120 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 355677778888899999999999875 344444453 8899999988777654
No 285
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.00 E-value=61 Score=20.42 Aligned_cols=76 Identities=5% Similarity=-0.083 Sum_probs=44.6
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCC-hhhHHHHHHHHh----hcCC
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN-VVSWTAIIAAFA----QEWE 77 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~t~~~li~~~~----~~g~ 77 (86)
+.++...|+.+.|.+++.-+.-..-.+ .....++.. ..++.+.+|..+-+..+++. -..|..++..+. +.+.
T Consensus 115 l~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~ 191 (226)
T PF13934_consen 115 LQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGR 191 (226)
T ss_pred HHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhH
Confidence 445555677776766665433222222 222333333 77899999999988777643 346777776666 5555
Q ss_pred hhHh
Q 043594 78 VDMC 81 (86)
Q Consensus 78 ~~~a 81 (86)
+++-
T Consensus 192 ~~~L 195 (226)
T PF13934_consen 192 LDEL 195 (226)
T ss_pred HHHH
Confidence 4443
No 286
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=30 Score=24.57 Aligned_cols=56 Identities=5% Similarity=0.039 Sum_probs=39.0
Q ss_pred CCchHHHHHHHH---HHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 27 FVANVYVGSSLI---SFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 27 ~~~~~~~~~~li---~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
++.|+...-++| ...-..|++++|.=.|++-+ .| +.-+|..|+..|.-.|.+.||.
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 344444444444 33445688888888887544 34 7889999999999999998886
No 287
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=49.92 E-value=70 Score=20.86 Aligned_cols=50 Identities=12% Similarity=-0.058 Sum_probs=35.0
Q ss_pred cCCchhHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 8 STRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
+.|++++|...|+.+...- -+...-+.=-++-++-+.++.+.|...+++.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4688888888888887542 1223334455566777888998888888876
No 288
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=49.90 E-value=30 Score=19.77 Aligned_cols=27 Identities=4% Similarity=-0.029 Sum_probs=21.5
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHH
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGS 35 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~ 35 (86)
.|+...+..++..+...|.+|-...|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 588999999999999999999888775
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.77 E-value=32 Score=23.55 Aligned_cols=39 Identities=3% Similarity=0.036 Sum_probs=28.9
Q ss_pred ChHHHHHhhcCCC----CCChhhHHHHHHHHhhcCChhHhhhc
Q 043594 46 ENIDVYKMFEKMP----VRNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 46 ~~~~A~~~~~~m~----~~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
+.+++.-+...-. -||-++++.+|+.+.+.++..+|.++
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~v 157 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASV 157 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHH
Confidence 3345555444433 27999999999999999999988764
No 290
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=48.83 E-value=24 Score=24.63 Aligned_cols=71 Identities=10% Similarity=-0.067 Sum_probs=45.1
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCC-----------Ch-------------hh
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-----------NV-------------VS 64 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~-------------~t 64 (86)
.|+++.|.++-. -..++..|..|=+...++|+++-|++.|.+...- |. --
T Consensus 331 lg~L~~A~~~a~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 331 LGNLDIALEIAK------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp CT-HHHHHHHCC------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred cCCHHHHHHHHH------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 455555544433 2346779999999999999999999999987531 11 12
Q ss_pred HHHHHHHHhhcCChhHhhhcc
Q 043594 65 WTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 65 ~~~li~~~~~~g~~~~a~~~f 85 (86)
+|....++.-.|++++..+++
T Consensus 405 ~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 405 INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 455556666666666666554
No 291
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=48.75 E-value=85 Score=21.78 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc--------------------CCCCCChhhHHHHHHHHhhcC
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE--------------------KMPVRNVVSWTAIIAAFAQEW 76 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~--------------------~m~~~~~~t~~~li~~~~~~g 76 (86)
....+..+.|.-.|...+-..+..+...--+++|.+.-. -...||+..|+++...|+--|
T Consensus 172 ~~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~ 251 (391)
T cd07229 172 RRIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSA 251 (391)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCcc
Confidence 334455566766777777777777766667778774332 223589999999998887665
Q ss_pred Ch
Q 043594 77 EV 78 (86)
Q Consensus 77 ~~ 78 (86)
-+
T Consensus 252 ~~ 253 (391)
T cd07229 252 AL 253 (391)
T ss_pred cc
Confidence 44
No 292
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.35 E-value=53 Score=21.34 Aligned_cols=68 Identities=6% Similarity=0.039 Sum_probs=45.3
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc---CCCC---CChhhHHHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE---KMPV---RNVVSWTAIIAA 71 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~---~m~~---~~~~t~~~li~~ 71 (86)
++.+-+.+.+.++.+...+=+|.. ..|.-.-..++.-||-.|++++|..-++ +|.. +....|..+|..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345667778888888777666654 2345566677789999999999987555 3431 345566666654
No 293
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=48.03 E-value=33 Score=17.34 Aligned_cols=38 Identities=13% Similarity=-0.133 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHH
Q 043594 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYK 52 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 52 (86)
+.+.+++...... .+...+...|+.++-++|+.+-|..
T Consensus 41 ~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~ 78 (83)
T PF00531_consen 41 EQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEK 78 (83)
T ss_dssp HHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHH
Confidence 3444444444443 2233344555555555555544443
No 294
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=47.61 E-value=11 Score=20.53 Aligned_cols=20 Identities=5% Similarity=0.077 Sum_probs=8.6
Q ss_pred HHHHHhcCChHHHHHhhcCC
Q 043594 38 ISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 38 i~~y~~~g~~~~A~~~~~~m 57 (86)
|.-|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444444444444444
No 295
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.32 E-value=38 Score=19.76 Aligned_cols=42 Identities=5% Similarity=0.068 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
++...+.+.|+++++. =-.+++.....+..-.|.++++++.+
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~ 48 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELRE 48 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4455566667666443 23455666666666777777777653
No 296
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=47.08 E-value=31 Score=22.39 Aligned_cols=50 Identities=6% Similarity=-0.130 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 34 GSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 34 ~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
.+..++-+.+.+++++|....++-. +| |.-+-..++.-|+-.|++++|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHH
Confidence 3445666777788888887666432 34 67778899999999999999974
No 297
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.94 E-value=36 Score=18.79 Aligned_cols=45 Identities=4% Similarity=-0.127 Sum_probs=25.8
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI 48 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~ 48 (86)
+........-.|.++++.+.+.+...+..|.=--|+.+.+.|-+.
T Consensus 15 ~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 15 ELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 334444446677888888887776666554333445566666543
No 298
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=46.91 E-value=42 Score=24.19 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.7
Q ss_pred CCChhhHHHHHHHHhhcCCh
Q 043594 59 VRNVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 59 ~~~~~t~~~li~~~~~~g~~ 78 (86)
.||+..|+++...|+--|-+
T Consensus 313 aPnVLIWSAV~aScs~pgif 332 (543)
T KOG2214|consen 313 APNVLIWSAVCASCSVPGIF 332 (543)
T ss_pred CCceehhHHHHHhccccccc
Confidence 48999999999999876654
No 299
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.87 E-value=39 Score=22.58 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=21.5
Q ss_pred CchHH-HHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 28 VANVY-VGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 28 ~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
.||.. =||.-|.--.+.|++++|..+.+|-+.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~ 285 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAER 285 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34433 456777777777777777777777654
No 300
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=46.64 E-value=45 Score=17.64 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=12.7
Q ss_pred hhHHHHHHHHhhcCChhHhhhcc
Q 043594 63 VSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 63 ~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.|...|+.++-+.|.-+-|..+|
T Consensus 64 AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 64 ATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred ccHHHHHHHHHHcCcHHHHHhhC
Confidence 45555666666665555554443
No 301
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=46.11 E-value=29 Score=19.26 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=33.3
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChH
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI 48 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~ 48 (86)
..+.+.+.+...+.....+-|+.++-+.+|+.+.+...+.
T Consensus 9 MqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~ 48 (99)
T cd04445 9 MKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVR 48 (99)
T ss_pred HhCcccchhhhhHHHhhccccceecccHHHHHHHHhhccc
Confidence 4566777788888888888999999999999999887664
No 302
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.00 E-value=73 Score=24.27 Aligned_cols=71 Identities=8% Similarity=0.014 Sum_probs=42.3
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHH--cCCchHHHHHHHHHHHHhcCChH------HHHHhhcCCC-CCChhhHHHHHHH
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRS--GFVANVYVGSSLISFCGKCGENI------DVYKMFEKMP-VRNVVSWTAIIAA 71 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~y~~~g~~~------~A~~~~~~m~-~~~~~t~~~li~~ 71 (86)
+++.+|...|++-.++++++..... |-+.=..-+|--|....+.|.++ .|.+.+++-. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 4677888888888888888877654 22223335556666666667653 3444444322 3456666665544
No 303
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=45.55 E-value=41 Score=24.24 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=33.6
Q ss_pred hcCChHHHHHhhcCCC--CCC---hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 43 KCGENIDVYKMFEKMP--VRN---VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 43 ~~g~~~~A~~~~~~m~--~~~---~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+.|+.++|.+.|.+|- .|. ......||..+...+...++..++
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 4599999999999985 242 336677999999999888887664
No 304
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=44.91 E-value=17 Score=19.43 Aligned_cols=34 Identities=6% Similarity=-0.088 Sum_probs=27.4
Q ss_pred cCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 26 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
.|.|+...||.+++.....+.+.-|..++.+...
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 4788999999999998888888888777766543
No 305
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=44.36 E-value=52 Score=23.67 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=33.4
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
||.-|--.|++.+|.+-..++--. +-.+..++-++|...-+.|+-..-.+++++
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~ 568 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKE 568 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 456667778888886655443221 223567788888888887775544444443
No 306
>PF03013 Pyr_excise: Pyrimidine dimer DNA glycosylase; InterPro: IPR004260 Pyrimidine dimer DNA glycosylases are enzymes responsible for initiating the base excision repair pathway, excising pyrimidine dimers by hydrolysis of the glycosylic bond of the 5' pyrimidine, followed by the intra-pyrimidine phosphodiester bond []. One such enzyme is T4 endonuclease V, an enzyme responsible for the first step of a pyrimidine-dimer-specific excision-repair pathway []. Bacteriophage T4 that are deficient in these enzymes are extremely sensitive to UV.; PDB: 2FCC_B 1ENJ_A 1ENI_A 1ENK_A 1VAS_A 2END_A.
Probab=44.29 E-value=17 Score=21.08 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHH
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLI 38 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li 38 (86)
-..++++|.++|+.|+..-.+.+.
T Consensus 65 h~~l~~EM~~RGY~~~~~~~~~~~ 88 (130)
T PF03013_consen 65 HQLLMAEMQRRGYKPNSPWFDDLD 88 (130)
T ss_dssp HHHHHHHHHHTT---S--S----T
T ss_pred HHHHHHHHHHcCCCCChhhhhccc
Confidence 357899999999999877666444
No 307
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=44.20 E-value=30 Score=17.59 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=37.7
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCCh---hhHHHHHHHHhhcCChh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNV---VSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~---~t~~~li~~~~~~g~~~ 79 (86)
++.|+++ +.+.+.+.+...+. .+..+...+..|+.+-+..+++.-..++. .-++.|..+ +..|..+
T Consensus 5 ~~~~~~~----~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~ 73 (89)
T PF12796_consen 5 AQNGNLE----ILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYA-AENGNLE 73 (89)
T ss_dssp HHTTTHH----HHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTHHH
T ss_pred HHcCCHH----HHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHH-HHcCCHH
Confidence 3445544 44555556655554 44466677788999888888886554433 234444443 3444443
No 308
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.75 E-value=83 Score=19.92 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCC-----C----CChhhHHHHHHHHhhcCChhHhhh
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMP-----V----RNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~-----~----~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
.+.--|-.-|.+.|++++|.++|+.+. + +...+-..+...+.+.|+.+..+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344445577889999999999999873 1 122334556677778888777654
No 309
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=43.56 E-value=79 Score=20.18 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 043594 16 TQYQCLAVRSGFVANVYVGSSLISFCGKCG 45 (86)
Q Consensus 16 ~~~~~~m~~~g~~~~~~~~~~li~~y~~~g 45 (86)
.++...+...|+..++.+++.|++=|.+.+
T Consensus 144 sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~ 173 (221)
T KOG0037|consen 144 SELRQALTQLGYRLSPQFYNLLVRKYDRFG 173 (221)
T ss_pred HHHHHHHHHcCcCCCHHHHHHHHHHhcccc
Confidence 467778888999999999999999999764
No 310
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.13 E-value=55 Score=19.41 Aligned_cols=48 Identities=6% Similarity=0.086 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHhcCC-hHHHHHhhcCCCC----CChhhHHHHHHHHhhcC
Q 043594 29 ANVYVGSSLISFCGKCGE-NIDVYKMFEKMPV----RNVVSWTAIIAAFAQEW 76 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~-~~~A~~~~~~m~~----~~~~t~~~li~~~~~~g 76 (86)
.|.-+|++++.+.++... ---+..+|+-|++ ....-|..||+++.+.-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 466688888888877766 4556667766653 35566888888887763
No 311
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=42.75 E-value=75 Score=24.91 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=34.5
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
|.-.|+.|.|.+-...+. +..+|..|-+|+.+-.+++-|.-++-.|.
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 344577777765554433 45689999999999999988888888874
No 312
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=42.70 E-value=36 Score=23.31 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHH
Q 043594 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID 49 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~ 49 (86)
-.-.+++.+..++|+-.|..+-..+|..|=+-|.+++
T Consensus 313 l~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~lEK 349 (363)
T TIGR03236 313 LPLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLER 349 (363)
T ss_pred chHHHHHHHHHhcCceeCchhHHHHHHHHHHhCcccc
Confidence 3567899999999999999999999999998887753
No 313
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=42.69 E-value=29 Score=26.11 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCChHHHHHhhcCCCC--CChhh-----------HHHHHHHHhhcCChhHhhhcc
Q 043594 35 SSLISFCGKCGENIDVYKMFEKMPV--RNVVS-----------WTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 35 ~~li~~y~~~g~~~~A~~~~~~m~~--~~~~t-----------~~~li~~~~~~g~~~~a~~~f 85 (86)
.+++.++...+++++|..+-+.-++ ||+.. |.--=.+|.+.|+-.||.+++
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vL 840 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVL 840 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHH
Confidence 4577888889999999999888775 45431 334457899999999998775
No 314
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.37 E-value=44 Score=20.03 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=21.2
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 20 CLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 20 ~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
+.+.+.|++++..=. +++.......+.-.|.++++.+.
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~ 52 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLR 52 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHH
Confidence 334556766655433 33344444455667777777665
No 315
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=42.11 E-value=1.4e+02 Score=22.18 Aligned_cols=66 Identities=3% Similarity=-0.029 Sum_probs=47.2
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCC
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~ 77 (86)
.+..+++++++.+....+ -+....|.||+.|.+.|.. .|.+++-...+|...-+-..|+.|.....
T Consensus 18 ~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~y~~~t~s~-~~~~il~~~~~P~~K~~~~~l~~~~~~~~ 83 (668)
T PF04388_consen 18 LSVLEEIKALLQELLNSD--REPWLVNGLVDYYLSTNSQ-RALEILVGVQEPHDKHLFDKLNDYFVKPS 83 (668)
T ss_pred hhhHHHHHHHHHHHhhcc--chHHHHHHHHHHHhhcCcH-HHHHHHHhcCCccHHHHHHHHHHHHcCch
Confidence 345666666666665543 4568899999999998887 46666667788866767777777776654
No 316
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.07 E-value=41 Score=22.20 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=24.3
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSS 36 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 36 (86)
..+++++|.+++.++-+.|+.|...+-|.
T Consensus 250 ~~~~~~~A~~il~~lw~lgysp~Dii~~~ 278 (333)
T KOG0991|consen 250 LKRNIDEALKILAELWKLGYSPEDIITTL 278 (333)
T ss_pred HhccHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 45789999999999999999998766543
No 317
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=41.72 E-value=90 Score=19.99 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHhhcCC
Q 043594 62 VVSWTAIIAAFAQEWE 77 (86)
Q Consensus 62 ~~t~~~li~~~~~~g~ 77 (86)
...+-..++-+-+.|+
T Consensus 246 ~~~~~~~~~~~~~~~~ 261 (267)
T cd06182 246 ESDAEEYLKELEDEGR 261 (267)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3334444444444443
No 318
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.44 E-value=31 Score=18.69 Aligned_cols=25 Identities=4% Similarity=-0.065 Sum_probs=17.8
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHc
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSG 26 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g 26 (86)
+++=+.+..-.++|.++...|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555666778888888888887
No 319
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.22 E-value=71 Score=18.40 Aligned_cols=24 Identities=8% Similarity=0.403 Sum_probs=17.4
Q ss_pred HHHHHHHhcCChHHHHHhhcCCCC
Q 043594 36 SLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 36 ~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
++|+..-+|...++|.++.+=|.+
T Consensus 66 tViD~lrRC~T~EEALEVInylek 89 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEK 89 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHH
Confidence 356667788888888888876653
No 320
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.18 E-value=88 Score=23.83 Aligned_cols=71 Identities=7% Similarity=0.016 Sum_probs=48.7
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.|.-.+|+++-.+.. -||-..|--=+.+++..+++++-+++=.++..| .=|-=.+.+|.+.|+.+||.+.+
T Consensus 697 ~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskksP--IGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 697 IGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKSP--IGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred ccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCC--CCchhHHHHHHhcccHHHHhhhh
Confidence 444455544433322 367778888888888888888888887777654 33455578888888888887654
No 321
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=41.02 E-value=83 Score=19.14 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=28.9
Q ss_pred hcCCchhHHHHHHHHHHHHcCC--------chHHHHHHHHHHHHhcCChHHHHHhhcCCCCC--ChhhHHHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFV--------ANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NVVSWTAIIAAF 72 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~--------~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~t~~~li~~~ 72 (86)
...|+..+.+++-..+.+.|-. +|+.+...+++.| |+++++| ....|..++.+.
T Consensus 39 R~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~f------------lReLP~pLi~~~~~~~~~~~~ 102 (194)
T cd04372 39 RVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKLY------------FRDLPIPVITYDTYPKFIDAA 102 (194)
T ss_pred ecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHHH------------HHhCCCccCCHHHHHHHHHHH
Confidence 3456666666666555543321 2555666666655 4555554 334455555543
No 322
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.95 E-value=84 Score=21.14 Aligned_cols=48 Identities=10% Similarity=-0.055 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+.-...++..+++..-+.++...+.|..+-...|+.+.|...|+..+
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344455666777776667788899999999999999999999999543
No 323
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=40.23 E-value=60 Score=20.03 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCchHH---HHHHHHHHHHhcCC---hHHHHHhhcCCCCCChhhHHHHHH
Q 043594 18 YQCLAVRSGFVANVY---VGSSLISFCGKCGE---NIDVYKMFEKMPVRNVVSWTAIIA 70 (86)
Q Consensus 18 ~~~~m~~~g~~~~~~---~~~~li~~y~~~g~---~~~A~~~~~~m~~~~~~t~~~li~ 70 (86)
+++.+.+.|+.+|.. +.-+++.+...+|. .++..+++.++...++. +..++.
T Consensus 16 vl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~~~~~~l~~~~~~~~~~~~~-l~~~~~ 73 (215)
T cd07209 16 VLKALAEAGIEPDIISGTSIGAINGALIAGGDPEAVERLEKLWRELSREDVF-LRGLLD 73 (215)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCcHHHHHHHHHHHhCChhhHH-HHHHHH
Confidence 567777888888866 56677777777887 78888999888766655 444443
No 324
>PF13961 DUF4219: Domain of unknown function (DUF4219)
Probab=39.68 E-value=33 Score=14.05 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=15.2
Q ss_pred ChhhHHHHHHHHhhcCChhHhh
Q 043594 61 NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 61 ~~~t~~~li~~~~~~g~~~~a~ 82 (86)
|-.+|..-+..+.+..++.++.
T Consensus 5 NY~~W~~~M~~~L~~~~lW~vV 26 (27)
T PF13961_consen 5 NYSTWKIRMKAYLESQDLWDVV 26 (27)
T ss_pred CHHHHHHHHHHHHHHcchhhhh
Confidence 5567777777777777766554
No 325
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.68 E-value=1.1e+02 Score=20.08 Aligned_cols=77 Identities=10% Similarity=0.015 Sum_probs=48.2
Q ss_pred hcCCchhHHHHHHHHHHHHc----CCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC----hhhHHHHHHHHhhcC
Q 043594 7 GSTRNIRGGTQYQCLAVRSG----FVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN----VVSWTAIIAAFAQEW 76 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~t~~~li~~~~~~g 76 (86)
-+.|++..|.+-|..-++.. ..||..-| |-..+...|++++|-.+|..+.. |+ .-+.=-|-....+.|
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 35677888888888887752 33444444 56777888888888888887642 21 122223334456666
Q ss_pred ChhHhhhcc
Q 043594 77 EVDMCYTFI 85 (86)
Q Consensus 77 ~~~~a~~~f 85 (86)
+-++|...|
T Consensus 230 ~~d~A~atl 238 (262)
T COG1729 230 NTDEACATL 238 (262)
T ss_pred CHHHHHHHH
Confidence 666666554
No 326
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=39.59 E-value=90 Score=19.12 Aligned_cols=35 Identities=6% Similarity=-0.108 Sum_probs=18.1
Q ss_pred hcCCchhHHHHHHHHHHHHcCCc-------hHHHHHHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVA-------NVYVGSSLISFC 41 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~-------~~~~~~~li~~y 41 (86)
...|+..+.+++-..+....+.+ |+.+...+++.|
T Consensus 43 R~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~lK~f 84 (203)
T cd04386 43 RVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASALKSY 84 (203)
T ss_pred eCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHHHHH
Confidence 34455555555555554332222 455666666655
No 327
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=38.61 E-value=38 Score=14.47 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHh
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKM 53 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 53 (86)
+....+...|+..+.. +.......|+++.|...
T Consensus 3 ~~v~~L~~mGf~~~~a----~~aL~~~~~d~~~A~~~ 35 (37)
T smart00165 3 EKIDQLLEMGFSREEA----LKALRAANGNVERAAEY 35 (37)
T ss_pred HHHHHHHHcCCCHHHH----HHHHHHhCCCHHHHHHH
Confidence 3456667778766521 12222334667776554
No 328
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=38.41 E-value=13 Score=19.48 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPVR 60 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 60 (86)
-+.+.|+..|...+-++-+.++|++|...
T Consensus 47 ~la~lLv~~y~~~~A~~vt~~il~~m~~~ 75 (83)
T PF02758_consen 47 DLADLLVQHYGEQRAWEVTLKILEKMNRN 75 (83)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHcChH
Confidence 46677777777777777777777777643
No 329
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=38.17 E-value=32 Score=15.14 Aligned_cols=14 Identities=29% Similarity=0.327 Sum_probs=6.6
Q ss_pred HHhhcCChhHhhhc
Q 043594 71 AFAQEWEVDMCYTF 84 (86)
Q Consensus 71 ~~~~~g~~~~a~~~ 84 (86)
.+-..|+.++|.++
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 34455555555554
No 330
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.99 E-value=1.2e+02 Score=20.30 Aligned_cols=81 Identities=4% Similarity=-0.051 Sum_probs=42.3
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC-CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
..+...|+++.|..+++.+...--........+-|..+.+.....+..++-.+.- .| |+..--.+-..+...|+.++|
T Consensus 176 ~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~A 255 (304)
T COG3118 176 ECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAA 255 (304)
T ss_pred HHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3455667777777777766443222222333344444444444433333333222 34 445555566777777777777
Q ss_pred hhc
Q 043594 82 YTF 84 (86)
Q Consensus 82 ~~~ 84 (86)
++.
T Consensus 256 le~ 258 (304)
T COG3118 256 LEH 258 (304)
T ss_pred HHH
Confidence 654
No 331
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.59 E-value=1.4e+02 Score=20.84 Aligned_cols=81 Identities=15% Similarity=-0.025 Sum_probs=44.9
Q ss_pred chhcCCchhHHHHHHHHHHHH-----cC---------CchHHHHHHHHHHHHhcCChHHHHHhhcCC---CCCChhhHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRS-----GF---------VANVYVGSSLISFCGKCGENIDVYKMFEKM---PVRNVVSWTA 67 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~-----g~---------~~~~~~~~~li~~y~~~g~~~~A~~~~~~m---~~~~~~t~~~ 67 (86)
.+-+.|++..|..-|+..++. ++ ..-..++..|.-+|.|.+++.+|.+.-+.. ..+|+-..--
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyR 296 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYR 296 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHH
Confidence 345667777777777664332 11 122445666667777777777777765543 3344432222
Q ss_pred HHHHHhhcCChhHhhhcc
Q 043594 68 IIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 68 li~~~~~~g~~~~a~~~f 85 (86)
==.+|...|+++.|...|
T Consensus 297 rG~A~l~~~e~~~A~~df 314 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDF 314 (397)
T ss_pred HHHHHHhhccHHHHHHHH
Confidence 224455556666666554
No 332
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=37.55 E-value=73 Score=20.62 Aligned_cols=64 Identities=9% Similarity=0.187 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC-------------------CCChhhHHHHHHHHh
Q 043594 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-------------------VRNVVSWTAIIAAFA 73 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------------------~~~~~t~~~li~~~~ 73 (86)
++|+-.=.++...|++.|-++.++|+.+- +-|.-++++++ .|.+.+|-.+-..|.
T Consensus 120 eQAE~tGkRL~elglk~d~vv~StM~RA~------ETadIIlk~l~d~lk~~s~~ll~EGaP~ppdPp~k~wrp~~~qy~ 193 (284)
T KOG4609|consen 120 EQAELTGKRLAELGLKFDKVVASTMVRAT------ETADIILKHLPDDLKRVSCPLLREGAPYPPDPPVKHWRPLDPQYY 193 (284)
T ss_pred HHHHHHhHHHHHcCCchhhhhhhhhhhhH------HHHHHHHHhCCCccceecccccccCCCCCCCCCcccCCccChHhh
Confidence 46777777888899999999999998764 33333444332 357788988888888
Q ss_pred hcC-ChhHhh
Q 043594 74 QEW-EVDMCY 82 (86)
Q Consensus 74 ~~g-~~~~a~ 82 (86)
+.| .++.|+
T Consensus 194 rdgaRIEaaf 203 (284)
T KOG4609|consen 194 RDGARIEAAF 203 (284)
T ss_pred hcchHHHHHH
Confidence 877 555554
No 333
>cd08305 Pyrin Pyrin: a protein-protein interaction domain. The Pyrin domain (or PYD), also called DAPIN or PAAD, is a subfamily of the Death Domain (DD) superfamily and it functions in several signaling pathways. The Pyrin domain is found at the N-terminus of a variety of proteins and serves as a linker that recruits other domains into signaling complexes. Pyrin-containing proteins include NALPs, ASC (Apoptosis-associated speck-like protein containing a CARD), and the interferon-inducible p200 (IFI-200) family of proteins which includes the human IFI-16, myeloid cell nuclear differentiation antigen (MNDA) and absent in melanoma (AIM) 2. NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case
Probab=37.15 E-value=17 Score=18.72 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCCCC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPVRN 61 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 61 (86)
+.+-|+..|....-++.+..+|++|...|
T Consensus 39 la~lL~~~y~~~~a~~~t~~i~~~m~~~d 67 (73)
T cd08305 39 IADLMEQKFGAVSALDKLINIFEDMPLRS 67 (73)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHcChHH
Confidence 56677777777777888888888876433
No 334
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=37.13 E-value=85 Score=21.24 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCchHH---HHHHHHHHHHhcCChHHHHHhhcCC------------------------------------C
Q 043594 18 YQCLAVRSGFVANVY---VGSSLISFCGKCGENIDVYKMFEKM------------------------------------P 58 (86)
Q Consensus 18 ~~~~m~~~g~~~~~~---~~~~li~~y~~~g~~~~A~~~~~~m------------------------------------~ 58 (86)
+.+.+.+.|+.|+.. +--+++.+....+..++-.+++++. .
T Consensus 86 VlkaL~e~gl~p~~i~GsSaGAivaa~~~~~t~~El~~~~~~~~gd~TF~Eay~~tgr~lnI~v~~~~~~~~~~lln~~T 165 (323)
T cd07231 86 VVRTLVEHQLLPRVIAGSSVGSIVCAIIATRTDEELQSFFRALLGDLTFQEAYDRTGRILGITVCPPRKSEPPRLLNYLT 165 (323)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHHHHHcCcccHHHHHhccCCEEEEEEecccCCCCceeeccCC
Confidence 455566677777654 3445555555555555555554322 2
Q ss_pred CCChhhHHHHHHHHhhcCC
Q 043594 59 VRNVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 59 ~~~~~t~~~li~~~~~~g~ 77 (86)
.||+..|+++...|+--|-
T Consensus 166 ~Pnv~I~sAv~aS~a~P~i 184 (323)
T cd07231 166 SPHVVIWSAVAASCAFPGL 184 (323)
T ss_pred CCCcHHHHHHHHHcCChhh
Confidence 4788889888877765443
No 335
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=37.05 E-value=86 Score=18.12 Aligned_cols=36 Identities=8% Similarity=-0.272 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChH
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI 48 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~ 48 (86)
...+.++++.+.+. .++...|..+||.-+++.|-+.
T Consensus 20 ~~t~~eI~~~l~~~-~ews~sTV~TLl~RL~KKg~l~ 55 (123)
T COG3682 20 PATVREIIEELPAD-REWSYSTVKTLLNRLVKKGLLT 55 (123)
T ss_pred CccHHHHHHHHhhc-ccccHHHHHHHHHHHHhccchh
Confidence 34577889988777 7888899999999999988663
No 336
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.56 E-value=43 Score=14.56 Aligned_cols=22 Identities=9% Similarity=-0.254 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHH
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGS 35 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~ 35 (86)
++.|..||++.+.. .|++.+|-
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 45666666666553 36655553
No 337
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=36.46 E-value=74 Score=18.67 Aligned_cols=38 Identities=11% Similarity=-0.003 Sum_probs=29.5
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISF 40 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 40 (86)
|...-+.+.+....+++..+.+.|+..+..|.+-.+.-
T Consensus 7 i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~e 44 (146)
T TIGR01529 7 IKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRE 44 (146)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 34455677788899999999999999888777665543
No 338
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=36.40 E-value=69 Score=23.37 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhc
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQE 75 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~ 75 (86)
.+| ++|-.+.|||++++|.++..+.. ++....+-..+..|...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 344 56777889999999999883332 23344556666666554
No 339
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=35.57 E-value=1.1e+02 Score=18.79 Aligned_cols=35 Identities=9% Similarity=-0.056 Sum_probs=18.5
Q ss_pred hcCCchhHHHHHHHHHHHHcC--------CchHHHHHHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSGF--------VANVYVGSSLISFC 41 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~--------~~~~~~~~~li~~y 41 (86)
...|...+..++-..+.+.+. ..|+.+...+++.|
T Consensus 40 R~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~f 82 (195)
T cd04384 40 RLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCKLY 82 (195)
T ss_pred eCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHHHHH
Confidence 345655565555555433221 12566666666666
No 340
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=35.56 E-value=24 Score=17.39 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=10.0
Q ss_pred CChHHHHHhhcCCCC
Q 043594 45 GENIDVYKMFEKMPV 59 (86)
Q Consensus 45 g~~~~A~~~~~~m~~ 59 (86)
|-.++..++|.+|+.
T Consensus 6 gy~~~lI~vFK~~pS 20 (55)
T PF07443_consen 6 GYHEELIAVFKQMPS 20 (55)
T ss_pred cCCHHHHHHHHcCcc
Confidence 445667777777774
No 341
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=35.49 E-value=21 Score=18.90 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCCCC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPVRN 61 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 61 (86)
+.+.|++.|...+-++-+.++|+.|...+
T Consensus 47 la~lLv~~y~~~~A~~vt~~il~~in~~~ 75 (82)
T cd08321 47 LVDKMVQFYGEEYAVEVTVKILRKMNQNE 75 (82)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHhcchH
Confidence 56777888887778888888888876543
No 342
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.48 E-value=25 Score=24.97 Aligned_cols=45 Identities=9% Similarity=-0.076 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
..+++..+++..+.+.| .+| +.+.-|++|.|.+++++|..-+++=
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s 112 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKES 112 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhh
Confidence 45677777888887776 233 5566789999999999999888753
No 343
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=35.25 E-value=25 Score=16.47 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCchHHHHH
Q 043594 16 TQYQCLAVRSGFVANVYVGS 35 (86)
Q Consensus 16 ~~~~~~m~~~g~~~~~~~~~ 35 (86)
.++..++.+.|+.|-+++-+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~s 28 (44)
T smart00540 9 AELRAELKQYGLPPGPITDT 28 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcc
Confidence 47888999999988776544
No 344
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=35.07 E-value=1e+02 Score=18.55 Aligned_cols=37 Identities=3% Similarity=-0.199 Sum_probs=22.0
Q ss_pred hhcCCchhHHHHHHHHHHHH--cC-----CchHHHHHHHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRS--GF-----VANVYVGSSLISFCG 42 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~--g~-----~~~~~~~~~li~~y~ 42 (86)
|...|+..+..++.+.+.+. +. ..|+.+...+++.|.
T Consensus 37 FR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yL 80 (184)
T cd04385 37 YRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFL 80 (184)
T ss_pred eeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 34566777777777666442 22 236677777776663
No 345
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=35.04 E-value=49 Score=16.25 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHcCCc
Q 043594 12 IRGGTQYQCLAVRSGFVA 29 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~ 29 (86)
.+...++|..|.+.|.-|
T Consensus 44 ~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 44 QQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHHcCCcC
Confidence 456678888888888654
No 346
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=34.71 E-value=51 Score=19.18 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=21.2
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCC
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFV 28 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~ 28 (86)
+-.+-..|+++.|.++....++.|+.
T Consensus 55 mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 55 MVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 34456789999999999999999863
No 347
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=34.51 E-value=98 Score=18.07 Aligned_cols=38 Identities=5% Similarity=-0.161 Sum_probs=22.8
Q ss_pred hhcCCchhHHHHHHHHHHHHcC------CchHHHHHHHHHHHHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGF------VANVYVGSSLISFCGK 43 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~------~~~~~~~~~li~~y~~ 43 (86)
|...|+..+..++.+.+...+. ..|+.+..++++.|.+
T Consensus 25 FR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr 68 (174)
T smart00324 25 YRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLR 68 (174)
T ss_pred eecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 4455666666676666655433 2466677777776643
No 348
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=34.16 E-value=79 Score=16.90 Aligned_cols=41 Identities=2% Similarity=-0.070 Sum_probs=24.7
Q ss_pred CChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 45 GENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 45 g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..+.++.-.+--++......|..++.++-+.|--+++..+|
T Consensus 61 ~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r~g~~~~~~~yf 101 (106)
T PF14518_consen 61 SHYPEALGALLATESSVPQIYRRLIKGLRRLGLDEEDLEYF 101 (106)
T ss_dssp SSTHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--TTTTHHH
T ss_pred hhHHHHHHHHHHHhhcChHHHHHHHHHHHHcCCCccccchh
Confidence 44455555554333344556889999999998655665554
No 349
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=34.15 E-value=84 Score=17.15 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhhc
Q 043594 35 SSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 35 ~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
..+-.-|-+.|..+.+.+.+..-. +..-.|-..|+.++-.++.-.-|.++
T Consensus 36 D~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 36 DNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHH
Confidence 334444555555555555555321 22225555555555555554444443
No 350
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=34.12 E-value=79 Score=25.32 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=28.4
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHH--HHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVY--VGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
|.++-.+|+++++..+..++... -|.. +--.|++-+...++.-+|-++..+-
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34555566666666666655322 1222 2245566666667766666666554
No 351
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.05 E-value=1.3e+02 Score=19.99 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
.++|-.+..+|.+.. --+..++--..+|..+|+.+-|-..++
T Consensus 74 yEqaamLake~~kls--Evvdl~eKAs~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLS--EVVDLYEKASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence 344444444444421 223467777888888888766655554
No 352
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=34.00 E-value=1.2e+02 Score=18.77 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChh
Q 043594 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~ 79 (86)
+.+.+...+|+-|...|+.+..+++.=.+.. ...-.+.++.-|-+.|-.+
T Consensus 20 lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~-~~LDidq~i~lC~~~~Lyd 69 (196)
T PF12816_consen 20 LPPEVFKALVEHYASKGRLERLEQLILHLDP-SSLDIDQVIKLCKKHGLYD 69 (196)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCH-HhcCHHHHHHHHHHCCCCC
Confidence 4568899999999999999999888877642 1112244566666666554
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.63 E-value=1e+02 Score=21.00 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=44.4
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
++|..+|.+.+|-+++....+.. +.+...+--|+..+..-|+--.|.+-++.+.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 56788999999999998887764 5677888899999999999888877777653
No 354
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.31 E-value=2.3e+02 Score=22.14 Aligned_cols=75 Identities=11% Similarity=0.046 Sum_probs=46.7
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCC-hhhHHHHHHHHhhcCChhHhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN-VVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~t~~~li~~~~~~g~~~~a~ 82 (86)
-++..+.+.-.++..+.+.|+.. .-.-+.|+..|.+.++.++-.++.+....-. .+-.-+.+.-+-+.+..++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHH
Confidence 34444555556667777778644 3345688999999999999988888765211 112344555555555555554
No 355
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.13 E-value=74 Score=20.52 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCCCCC-hhhH-HHHHHHHhhcCChhHhhh
Q 043594 34 GSSLISFCGKCGENIDVYKMFEKMPVRN-VVSW-TAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 34 ~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~t~-~~li~~~~~~g~~~~a~~ 83 (86)
.-+|-..+.-||..++|..+++...=-. -... --|++.|.++.+-++..+
T Consensus 150 vEAlaA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~ 201 (263)
T KOG3154|consen 150 VEALAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVE 201 (263)
T ss_pred HHHHHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHH
Confidence 3445555566777788877777654211 1111 236777777777666554
No 356
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=33.10 E-value=1.8e+02 Score=20.54 Aligned_cols=84 Identities=8% Similarity=-0.067 Sum_probs=54.7
Q ss_pred hcchhcCCchhHHHHHHHHHHHH-cCCch-----HHHHHHHHHHHHh----cCChHHHHHhhcCCCC--CChhhHHHHH-
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRS-GFVAN-----VYVGSSLISFCGK----CGENIDVYKMFEKMPV--RNVVSWTAII- 69 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~-g~~~~-----~~~~~~li~~y~~----~g~~~~A~~~~~~m~~--~~~~t~~~li- 69 (86)
|+..+=.|+=+.|.+.+.+-.+. |++.. ...|..++..++- ....+.|.++++.+.+ |+..-|.-.-
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g 274 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG 274 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 33444456767777766665543 33322 2345555544443 4677889999999875 8988886655
Q ss_pred HHHhhcCChhHhhhccC
Q 043594 70 AAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 70 ~~~~~~g~~~~a~~~f~ 86 (86)
..+...|++++|++.|+
T Consensus 275 R~~~~~g~~~~Ai~~~~ 291 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFE 291 (468)
T ss_pred HHHHHhcCHHHHHHHHH
Confidence 44777899999998774
No 357
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=32.95 E-value=20 Score=19.12 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
-+.+.|+..|....-++-+..+|+.|-.
T Consensus 46 dLa~lLv~~y~~~~A~~~t~~if~~mn~ 73 (86)
T cd08320 46 DLAELLVEHYGGQQAWDVTLSIFEKMNL 73 (86)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHCh
Confidence 3577788888888888888888888754
No 358
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=32.78 E-value=71 Score=16.88 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=24.3
Q ss_pred HHHHHHHHHH--cCCchHHHHHHHHHHHHhc-CChHHHHHhhcCC
Q 043594 16 TQYQCLAVRS--GFVANVYVGSSLISFCGKC-GENIDVYKMFEKM 57 (86)
Q Consensus 16 ~~~~~~m~~~--g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m 57 (86)
+++|.++... ...+-..+...+|..||.. ..+.++.+.+++.
T Consensus 2 k~~w~~i~~~L~~~~~l~~~D~~~l~~yc~~~~~~~~~~~~l~~~ 46 (100)
T PF05119_consen 2 KKEWKRIVPELKELGILSNLDVPLLERYCEAYSRYREAEKELKKE 46 (100)
T ss_pred hHHHHHHHHHHHHcCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445544332 1223344666777778774 6777777777753
No 359
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=32.33 E-value=1.7e+02 Score=20.22 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=33.7
Q ss_pred HHHHHHHhcCChHHHHHhhcCCCCC---Chh-hH---HHHHHHHhh---cCChhHhhhcc
Q 043594 36 SLISFCGKCGENIDVYKMFEKMPVR---NVV-SW---TAIIAAFAQ---EWEVDMCYTFI 85 (86)
Q Consensus 36 ~li~~y~~~g~~~~A~~~~~~m~~~---~~~-t~---~~li~~~~~---~g~~~~a~~~f 85 (86)
.++-+|-...+++.-.++.+.++.+ ++. +- --..-++.| .|+-++|.+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il 205 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQIL 205 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 3444688889999999999988753 211 11 123356667 88999998764
No 360
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=32.07 E-value=93 Score=18.47 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 18 YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 18 ~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
++..+.+..+++|...-=.-|--++..+++.+|.+.|=+|.
T Consensus 46 L~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~Ls 86 (144)
T PF02840_consen 46 LFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKLS 86 (144)
T ss_dssp HHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66777777788887755555556788999999999988773
No 361
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=31.97 E-value=85 Score=16.60 Aligned_cols=41 Identities=7% Similarity=0.062 Sum_probs=29.4
Q ss_pred HHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhh
Q 043594 41 CGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 41 y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
....|+.+.|..+++.++ +-.--|..++++.-..|..+-|-
T Consensus 42 ~~~~G~~~aa~~Ll~~L~-r~~~Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 42 ENNSGNIKAAWTLLDTLV-RRDNWLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HhcCChHHHHHHHHHHHh-ccCChHHHHHHHHHHcCCHHHHH
Confidence 345688888888888777 45556678888888887766554
No 362
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.92 E-value=1.7e+02 Score=20.12 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.0
Q ss_pred cCCchhHHHHHHHHHHHHcCCch-------------HH--------HHHHHHH-------HHHhcCChHHHHHhhcCCC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVAN-------------VY--------VGSSLIS-------FCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~-------------~~--------~~~~li~-------~y~~~g~~~~A~~~~~~m~ 58 (86)
+.|+.++|.++..+++.+|++-. +. .-++++. .+.+-|+.+.|++.+-.|+
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP 268 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP 268 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence 56788899999999998887432 11 2233333 3456789999999888886
No 363
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=31.55 E-value=64 Score=15.01 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHcCCch
Q 043594 13 RGGTQYQCLAVRSGFVAN 30 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~ 30 (86)
+..+++.+.+.+.|+.||
T Consensus 29 ~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 29 ETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 345678888888999886
No 364
>KOG1874 consensus KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 [Transcription]
Probab=31.50 E-value=77 Score=25.62 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=30.5
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHH
Q 043594 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67 (86)
Q Consensus 28 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~ 67 (86)
.+|..... |+.++...|++..|..++++++..+.++-.-
T Consensus 254 ~~dnq~lG-Lle~lL~~gdw~~A~~l~dr~p~~~~vs~~~ 292 (1477)
T KOG1874|consen 254 LRDNQKLG-LLEGLLIHGDWRHAQDLRDRLPPYYAVSHSL 292 (1477)
T ss_pred ccchhhhh-hHHHhhhcccHHHHHHHHHhccccchhhhhH
Confidence 34555555 8899999999999999999999766665444
No 365
>PF05261 Tra_M: TraM protein, DNA-binding; InterPro: IPR007925 The TraM protein is an essential part of the DNA transfer machinery of the conjugative resistance plasmid R1 (IncFII). On the basis of mutational analyses, it was shown that the essential transfer protein TraM has at least two functions. First, a functional TraM protein was found to be required for normal levels of transfer gene expression. Second, experimental evidence was obtained that TraM stimulates efficient site-specific single-stranded DNA cleavage at the oriT, in vivo. Furthermore, a specific interaction of the cytoplasmic TraM protein with the membrane protein TraD was demonstrated, suggesting that the TraM protein creates a physical link between the relaxosomal nucleoprotein complex and the membrane-bound DNA transfer apparatus [].; GO: 0003677 DNA binding, 0000746 conjugation; PDB: 3ON0_A 3OMY_B 1DP3_A 2G9E_A 3D8A_B 2G7O_A.
Probab=31.29 E-value=52 Score=19.10 Aligned_cols=43 Identities=14% Similarity=-0.082 Sum_probs=29.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
.|.+..-.++-..|...=...|-.+....+++..+++..-|..
T Consensus 6 ~y~s~~v~~~I~~iVe~r~qeGA~~~dvs~SSv~smLlELGLr 48 (127)
T PF05261_consen 6 IYVSNKVLEEINDIVEERRQEGATEKDVSFSSVSSMLLELGLR 48 (127)
T ss_dssp CE--HCHHHHHHHHHHHHHCCT-TTTT--HHHHHHHHHHCCCC
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhHH
Confidence 3444455666677777777789999999999999999998854
No 366
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=31.25 E-value=85 Score=16.36 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=10.0
Q ss_pred hhHHHHHHHHhhcCChhHh
Q 043594 63 VSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 63 ~t~~~li~~~~~~g~~~~a 81 (86)
.|...|+.++-+.|..+-+
T Consensus 55 ATv~~L~~aL~~i~R~Di~ 73 (77)
T cd08311 55 ATLDALCTALRRIQREDIA 73 (77)
T ss_pred chHHHHHHHHHHcChHHHH
Confidence 5555555555555554443
No 367
>PHA00439 exonuclease
Probab=31.03 E-value=43 Score=22.19 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=17.5
Q ss_pred HcCCchHHHHHHHHHHHHhcCChHH
Q 043594 25 SGFVANVYVGSSLISFCGKCGENID 49 (86)
Q Consensus 25 ~g~~~~~~~~~~li~~y~~~g~~~~ 49 (86)
.+-.+....|.++++.|.++|.-++
T Consensus 233 ~~~~~~~~~w~~~v~~~~k~g~~e~ 257 (286)
T PHA00439 233 RAPEPEETLWDCIVTLGAKAGMTEE 257 (286)
T ss_pred cCCCccccHHHHHHHHHHHcCCCHH
Confidence 3344455788888888888887654
No 368
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=30.70 E-value=79 Score=15.84 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=9.0
Q ss_pred chHHHHHHHHHHHHhcCC
Q 043594 29 ANVYVGSSLISFCGKCGE 46 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~ 46 (86)
+|+.+-...+.+.++-|.
T Consensus 43 ~~~~vr~~a~~aL~~i~~ 60 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIGD 60 (88)
T ss_dssp SSHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 445555555555555443
No 369
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=30.50 E-value=50 Score=17.06 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=22.3
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC 44 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~ 44 (86)
.+++.++......+...|+.++.. .+.+.....+.
T Consensus 17 ~~~~~~~~~~~~~l~~~G~s~~~I-l~~l~~~l~~~ 51 (89)
T PF08542_consen 17 NGDFKEARKKLYELLVEGYSASDI-LKQLHEVLVES 51 (89)
T ss_dssp HTCHHHHHHHHHHHHHTT--HHHH-HHHHHHHHHTS
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHh
Confidence 458899999888888888877554 34444444443
No 370
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=30.36 E-value=92 Score=16.49 Aligned_cols=31 Identities=3% Similarity=-0.178 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 043594 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKC 44 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~ 44 (86)
+.|.+++..+... -+.++-.||++-....++
T Consensus 14 EmA~~mL~DLr~d-ekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 14 EMAQQMLADLRDD-EKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHhcch-hhcChHHHHHHHHHHHHc
Confidence 3455555554332 245678899988887765
No 371
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=30.31 E-value=54 Score=16.83 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHcCCch
Q 043594 11 NIRGGTQYQCLAVRSGFVAN 30 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~ 30 (86)
..++|.+.+.+|.+.|.++.
T Consensus 51 ~~~~A~e~W~~L~~~GW~~~ 70 (75)
T PF07864_consen 51 TREEARELWKELQKTGWRRC 70 (75)
T ss_pred EHHHHHHHHHHHHHcCCEEC
Confidence 47899999999999997664
No 372
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.89 E-value=1.2e+02 Score=17.55 Aligned_cols=37 Identities=5% Similarity=-0.072 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
..-.|.+|++.+.+.+...+..|.=--|+.+...|-+
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4556777777777766555555444445556666555
No 373
>PRK02287 hypothetical protein; Provisional
Probab=29.71 E-value=1.4e+02 Score=18.31 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCC-CCChhhHH-HHHHHHhhcCChhHhhhc
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMP-VRNVVSWT-AIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~-~~~~~t~~-~li~~~~~~g~~~~a~~~ 84 (86)
.+.-++..++.=+|..+.|.++++... .++-..-| -++..|.++.+-++..++
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~ 162 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEI 162 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 355677888888999999999988654 22222223 478999998888776543
No 374
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=29.63 E-value=40 Score=13.63 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=7.4
Q ss_pred HHHHHHHhhcCCh
Q 043594 66 TAIIAAFAQEWEV 78 (86)
Q Consensus 66 ~~li~~~~~~g~~ 78 (86)
...++||++.|..
T Consensus 9 ~~~LsgCG~KGpL 21 (24)
T PF13627_consen 9 ALALSGCGQKGPL 21 (24)
T ss_pred HHHHHhcccCCCC
Confidence 3455666666643
No 375
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.43 E-value=33 Score=23.38 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=37.0
Q ss_pred hhHHHH-HHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHh
Q 043594 12 IRGGTQ-YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 12 ~~~a~~-~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a 81 (86)
+++... +-++|.+.++ |++.+...+.++-...+.+.+-+++-.+-.-+.+-+|.-|+.+++..|+.+-.
T Consensus 271 ~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 271 VKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHH
Confidence 444333 3344445444 66554444444444444444433333322224577888999999988887654
No 376
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=29.04 E-value=1.2e+02 Score=17.45 Aligned_cols=48 Identities=8% Similarity=-0.055 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHh--cCChHHHHHhhcCCCC
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGK--CGENIDVYKMFEKMPV 59 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~m~~ 59 (86)
...|..++.++.++--.-+....+++..+|-. .|+++.|.+.+++.-.
T Consensus 53 ~~~A~~LL~ei~rRIr~GS~RL~~al~r~~~~~daGD~dgARq~m~dvLA 102 (121)
T PF09543_consen 53 DEGAAALLREIRRRIRDGSRRLSRALHRMYRLRDAGDLDGARQEMRDVLA 102 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHh
Confidence 45566777777665444577888888888775 6999999998887643
No 377
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.53 E-value=2.1e+02 Score=19.92 Aligned_cols=53 Identities=8% Similarity=-0.210 Sum_probs=37.5
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHH----HHHHHHHHHh--cCChHHHHHhhcCCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYV----GSSLISFCGK--CGENIDVYKMFEKMP 58 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~li~~y~~--~g~~~~A~~~~~~m~ 58 (86)
+-+.+++..|.+++..+......|+... +-.+..+|.. .-++++|.+.++.+.
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~ 198 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPL 198 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhcc
Confidence 4467889999999999998876555543 3444444443 467788999998643
No 378
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=28.51 E-value=23 Score=20.83 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHcCCchHHH
Q 043594 12 IRGGTQYQCLAVRSGFVANVYV 33 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~ 33 (86)
...|.++.+++..+|-.|+...
T Consensus 51 ~~HA~~l~~~i~~rgg~~~~~~ 72 (161)
T cd01056 51 REHAEKLIKYQNKRGGRVVLQD 72 (161)
T ss_pred HHHHHHHHHHHHHcCCeeecCC
Confidence 5678899999999988776543
No 379
>PF14162 YozD: YozD-like protein
Probab=28.18 E-value=70 Score=15.62 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCchHH
Q 043594 14 GGTQYQCLAVRSGFVANVY 32 (86)
Q Consensus 14 ~a~~~~~~m~~~g~~~~~~ 32 (86)
-|.=.|.++.++|+-|+..
T Consensus 13 IAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 13 IAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHHccCCCcHH
Confidence 4566788999999988753
No 380
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=28.12 E-value=1.4e+02 Score=22.85 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=32.0
Q ss_pred chhcCCchhHHHHH--HHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 5 SCGSTRNIRGGTQY--QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 5 ~~~~~~~~~~a~~~--~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
+|-+.++..-.+.+ ++++.++|-.||..... +.++-.|++.+|-++|.+--
T Consensus 607 AY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 607 AYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHHcC
Confidence 44444554433332 45667778888877644 34556788888888888654
No 381
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=27.67 E-value=83 Score=17.98 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=28.3
Q ss_pred cCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHH
Q 043594 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAA 71 (86)
Q Consensus 26 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~ 71 (86)
....+-.+|+-+|+++-++| ++-=++++.+|--.|...|+.++..
T Consensus 68 A~R~~GlsYS~fi~gLkkA~-I~inRKvLadlAi~d~~aF~~lv~~ 112 (118)
T COG0292 68 AARENGLSYSRFINGLKKAG-IEIDRKVLADLAINDPAAFAALVEK 112 (118)
T ss_pred HHHHcCCcHHHHHHHHHHcC-chhhHHHHHHHHhcCHHHHHHHHHH
Confidence 34455667778887776654 3444556666665677777777653
No 382
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=27.62 E-value=7 Score=18.78 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=11.2
Q ss_pred chhHHHHHHHHHHHHc-CCch
Q 043594 11 NIRGGTQYQCLAVRSG-FVAN 30 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g-~~~~ 30 (86)
+++.|.+.|..+...| ++|+
T Consensus 28 d~~~A~~~F~~l~~~~~IP~e 48 (51)
T PF03943_consen 28 DYERALQNFEELKAQGKIPPE 48 (51)
T ss_dssp -CCHHHHHHHHCCCTT-S-CC
T ss_pred CHHHHHHHHHHHHHcCCCChH
Confidence 4667777777665544 4444
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=27.59 E-value=1.8e+02 Score=19.57 Aligned_cols=48 Identities=2% Similarity=-0.102 Sum_probs=19.6
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc-----CChHHHHHhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC-----GENIDVYKMF 54 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~-----g~~~~A~~~~ 54 (86)
+|.+....+.++-....+.--.-+..-|.++...|... |.+.+|+++.
T Consensus 129 sKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 129 SKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34444444444444443321112222344444444432 5555555544
No 384
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.54 E-value=2.1e+02 Score=19.66 Aligned_cols=57 Identities=5% Similarity=0.002 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHh
Q 043594 16 TQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFA 73 (86)
Q Consensus 16 ~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~ 73 (86)
.++|.+|...++.|.-+.+.=+--.++.+=.+.+...+++..-. |..-|-.|+.-||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-ChhhhHHHHHHHH
Confidence 47899999999999999888888888888888888888887642 2222444444444
No 385
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=27.41 E-value=2.9e+02 Score=21.25 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=8.6
Q ss_pred hhHHHHHHHHhhcCChhH
Q 043594 63 VSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 63 ~t~~~li~~~~~~g~~~~ 80 (86)
-+|--+..-+.++|.-+.
T Consensus 852 D~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEED 869 (913)
T ss_pred hHHHHHHHHHHHhCCHHH
Confidence 445545555555554333
No 386
>PHA02875 ankyrin repeat protein; Provisional
Probab=27.37 E-value=1.4e+02 Score=20.11 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=7.7
Q ss_pred HHHHHhcCChHHHHHhhc
Q 043594 38 ISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 38 i~~y~~~g~~~~A~~~~~ 55 (86)
+...++.|+.+-+.-+++
T Consensus 39 L~~A~~~~~~~~v~~Ll~ 56 (413)
T PHA02875 39 IKLAMKFRDSEAIKLLMK 56 (413)
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 333444444444444433
No 387
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=27.31 E-value=86 Score=16.84 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPVR 60 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 60 (86)
..|..+++.....++.+++..+|+....|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~t~ 31 (88)
T TIGR02531 3 ELLDELFDAILTLKNREECYRFFDDIATI 31 (88)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHhCCH
Confidence 35677888888888888888888877644
No 388
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=27.13 E-value=1.4e+02 Score=24.13 Aligned_cols=19 Identities=0% Similarity=0.073 Sum_probs=10.4
Q ss_pred HHHHHHHhhcCChhHhhhc
Q 043594 66 TAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 66 ~~li~~~~~~g~~~~a~~~ 84 (86)
-.|++-+...++.-+|-++
T Consensus 1003 ~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHHHHHHHHcccchhHHHH
Confidence 4555666666655555443
No 389
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=26.99 E-value=1.1e+02 Score=17.25 Aligned_cols=28 Identities=4% Similarity=0.005 Sum_probs=20.3
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGS 35 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 35 (86)
-.|+..++.++.+++...|..|..++-.
T Consensus 26 ~~~d~~~~l~~~~~l~~~G~d~~~~l~~ 53 (143)
T PF12169_consen 26 LEGDAAEALELLNELLEQGKDPKQFLDD 53 (143)
T ss_dssp HTT-HHHHHHHHHHHHHCT--HHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4688999999999999999888765443
No 390
>cd08304 DD_superfamily The Death Domain Superfamily of protein-protein interaction domains. The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.
Probab=26.92 E-value=97 Score=15.61 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=13.6
Q ss_pred HHHHhhcCCCCCChhhHHHHHHHHhhcCCh
Q 043594 49 DVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 49 ~A~~~~~~m~~~~~~t~~~li~~~~~~g~~ 78 (86)
.|.++++..+.....+++.++..+-+.|..
T Consensus 34 ~a~~ll~~l~~~~~~a~~~~~~vL~~~~~~ 63 (69)
T cd08304 34 AANELLNILESQYNHTLQLLFALFEDLGLH 63 (69)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHcCCH
Confidence 344444444333344444444444444443
No 391
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=26.76 E-value=1.5e+02 Score=17.92 Aligned_cols=37 Identities=8% Similarity=-0.140 Sum_probs=20.7
Q ss_pred hhcCCchhHHHHHHHHHHHHc--C---CchHHHHHHHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSG--F---VANVYVGSSLISFCG 42 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g--~---~~~~~~~~~li~~y~ 42 (86)
|...|+..+.+++-..+...+ . ..|+.+..++++.|.
T Consensus 37 FR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fL 78 (186)
T cd04406 37 YRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWL 78 (186)
T ss_pred eeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHH
Confidence 334566666666666554322 1 225667777777663
No 392
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=26.65 E-value=2.3e+02 Score=21.40 Aligned_cols=78 Identities=9% Similarity=0.111 Sum_probs=55.6
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-C-Ch--------hhHHHHH--HHHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-R-NV--------VSWTAII--AAFA 73 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~-~~--------~t~~~li--~~~~ 73 (86)
+..+|++++|-..+.+..... .+|..+-+--.+...++.++++|.++...... . +. -.|=-+= .+|.
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~ 493 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYL 493 (700)
T ss_pred HHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHH
Confidence 467899999999999888765 47888877888888899999999998776542 1 11 1343333 3477
Q ss_pred hcCChhHhhhc
Q 043594 74 QEWEVDMCYTF 84 (86)
Q Consensus 74 ~~g~~~~a~~~ 84 (86)
|.|++..|++=
T Consensus 494 r~~k~g~ALKk 504 (700)
T KOG1156|consen 494 RQNKLGLALKK 504 (700)
T ss_pred HHHHHHHHHHH
Confidence 77777666643
No 393
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.17 E-value=1.8e+02 Score=18.35 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHcCCch-------HHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 12 IRGGTQYQCLAVRSGFVAN-------VYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
++.|..+|+.+.+.--.|. ..+--..+-.|.+.|.+++|.++++..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 4566777777665432221 112234456788999999999999875
No 394
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=26.15 E-value=49 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=10.5
Q ss_pred hHHHHHHHHhhcCChhHhhhc
Q 043594 64 SWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 64 t~~~li~~~~~~g~~~~a~~~ 84 (86)
.|+.+=.-++....|++|.+.
T Consensus 798 A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555443
No 395
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.12 E-value=2.1e+02 Score=19.43 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=55.3
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHH-hcCChHHHHHhhcCCCC---CC------hhhHHHHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCG-KCGENIDVYKMFEKMPV---RN------VVSWTAIIAAF 72 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~-~~g~~~~A~~~~~~m~~---~~------~~t~~~li~~~ 72 (86)
|....+.|.++.|.++.+-+....-.-|+.-.-.+|+.|+ ++++++--.++.++... ++ ...|+.-+.-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 4567789999999999999999887778999999999988 57888777777776432 22 24566666555
Q ss_pred hhcCC
Q 043594 73 AQEWE 77 (86)
Q Consensus 73 ~~~g~ 77 (86)
...++
T Consensus 190 ~l~~~ 194 (360)
T PF04910_consen 190 RLEKE 194 (360)
T ss_pred HhcCc
Confidence 54443
No 396
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=26.08 E-value=35 Score=24.37 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=33.9
Q ss_pred CchhHHHHHHHHHHHHcCCchHH----HHHHHHHHHHhcCC-hHHHHHhhcC
Q 043594 10 RNIRGGTQYQCLAVRSGFVANVY----VGSSLISFCGKCGE-NIDVYKMFEK 56 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~y~~~g~-~~~A~~~~~~ 56 (86)
|-...|-+++.++.++|++||.. +..-.+++|+-.|- ++++.++-++
T Consensus 239 gl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~lr~~ 290 (561)
T COG2987 239 GLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADELREE 290 (561)
T ss_pred EEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHHHhh
Confidence 34556788999999999999865 46677888887763 4555555443
No 397
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=26.00 E-value=1.3e+02 Score=16.70 Aligned_cols=79 Identities=6% Similarity=-0.062 Sum_probs=41.8
Q ss_pred hhcCCchhHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC--hhhHHHHHHHHhhcCChh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGF--VANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN--VVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~--~~t~~~li~~~~~~g~~~ 79 (86)
+...|.++.+...+.......- ......+......+...++.+.|...+.+... ++ ...+..+-..+...++.+
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 3456667777777776644111 12233333333445566677777776665542 22 344555555666665555
Q ss_pred Hhhhc
Q 043594 80 MCYTF 84 (86)
Q Consensus 80 ~a~~~ 84 (86)
+|...
T Consensus 220 ~a~~~ 224 (291)
T COG0457 220 EALEY 224 (291)
T ss_pred HHHHH
Confidence 55443
No 398
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=25.95 E-value=1.7e+02 Score=17.96 Aligned_cols=38 Identities=8% Similarity=-0.088 Sum_probs=22.1
Q ss_pred hhcCCchhHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGF-----VANVYVGSSLISFCGK 43 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~~~~li~~y~~ 43 (86)
|...|+..+..++-+.+.+... ..|+.+..++++-|.+
T Consensus 39 FRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLR 81 (193)
T cd04382 39 YRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLR 81 (193)
T ss_pred eecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHH
Confidence 3445666666666666653221 2267777777776643
No 399
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=25.77 E-value=14 Score=22.89 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=16.0
Q ss_pred HHHHhcCChHHHHHhhcCCCCC
Q 043594 39 SFCGKCGENIDVYKMFEKMPVR 60 (86)
Q Consensus 39 ~~y~~~g~~~~A~~~~~~m~~~ 60 (86)
.++.-.......+.++++|++|
T Consensus 82 aGt~t~Kmap~lr~~YdQMPeP 103 (194)
T COG0377 82 AGTLTNKMAPALRRVYDQMPEP 103 (194)
T ss_pred eccchHHHHHHHHHHHHhCCCC
Confidence 4555555556778899999987
No 400
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=25.77 E-value=95 Score=16.32 Aligned_cols=59 Identities=3% Similarity=-0.163 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHH-hcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCC
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLISFCG-KCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li~~y~-~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~ 77 (86)
...+++.+...++- +..-... ... ..-..++|+.+.+.+..+...+++.++......+.
T Consensus 18 i~~llD~Ll~~~Vl-~~~E~e~---i~~~~~t~~dkar~Lid~v~~KG~~A~~iF~~~L~~~d~ 77 (83)
T cd08325 18 INGLLDDLLEKNVL-NEEEMEK---IKEENNTIMDKARVLVDSVTEKGQEAGQIFIKHLLNRDK 77 (83)
T ss_pred HHHHHHHHHHcCCC-CHHHHHH---HHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCh
Confidence 34566666666532 2221111 122 22368899999998888888888888888776653
No 401
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=25.15 E-value=72 Score=16.46 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=6.1
Q ss_pred ChHHHHHhhcCCC
Q 043594 46 ENIDVYKMFEKMP 58 (86)
Q Consensus 46 ~~~~A~~~~~~m~ 58 (86)
.+++|..+|+.+.
T Consensus 19 s~e~a~~l~egL~ 31 (69)
T PF11459_consen 19 SFEEADELMEGLR 31 (69)
T ss_pred CHHHHHHHHHHHh
Confidence 3444555555443
No 402
>PRK07143 hypothetical protein; Provisional
Probab=24.93 E-value=76 Score=20.85 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=30.5
Q ss_pred HhcCChHHHHHhhcCCC--C----CChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 42 GKCGENIDVYKMFEKMP--V----RNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 42 ~~~g~~~~A~~~~~~m~--~----~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
-+.|+.+.-.+.+++.. + .+...-+|.|.-+.+.|++++|-+++
T Consensus 122 ~r~G~~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G~i~~A~~lL 171 (279)
T PRK07143 122 NASWNADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFGDIELLNSLL 171 (279)
T ss_pred CCCCCHHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcCCHHHHHHHc
Confidence 35577777777653111 1 23345688999999999999998775
No 403
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=24.56 E-value=1.3e+02 Score=21.15 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHH
Q 043594 34 GSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA 67 (86)
Q Consensus 34 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~ 67 (86)
-..|..-+-.+|++++|.+++.+.+ +.||.+
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~---VETygs 164 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQ---VETYGS 164 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhh
Confidence 3445566678999999999988765 445544
No 404
>KOG1687 consensus NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit [Energy production and conversion]
Probab=24.47 E-value=42 Score=19.91 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=10.4
Q ss_pred HHHHHhhcCCCCC
Q 043594 48 IDVYKMFEKMPVR 60 (86)
Q Consensus 48 ~~A~~~~~~m~~~ 60 (86)
..-++++++|++|
T Consensus 87 PalrkvYdQMPEp 99 (168)
T KOG1687|consen 87 PALRKVYDQMPEP 99 (168)
T ss_pred HHHHHHHhhCCCC
Confidence 4556799999987
No 405
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=24.47 E-value=1.1e+02 Score=15.27 Aligned_cols=21 Identities=14% Similarity=-0.007 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHhhcCChhHhh
Q 043594 62 VVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 62 ~~t~~~li~~~~~~g~~~~a~ 82 (86)
..|...|+.++-+.|..+.|.
T Consensus 55 ~at~~~L~~aL~~~~~~~~a~ 75 (79)
T cd01670 55 NATVGNLIEALREIGRRDDAA 75 (79)
T ss_pred CcHHHHHHHHHHHcCHHHHHH
Confidence 455566666666665544443
No 406
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=24.47 E-value=1.2e+02 Score=21.79 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=35.3
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHH----HHHHHHHHHHhcCChHHHHHhhc
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVY----VGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
+|+.|+.+.+..+|+..++.|- -|.. +|+-|=++|.--+++++|.+.-.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 5788999999999999988883 3433 44444566667788888887543
No 407
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.37 E-value=1.7e+02 Score=17.70 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=35.1
Q ss_pred cCCchhHHHHHHHHHHHHcCC----chHHHHHHHHHHHHhc------------------CChHHHHHhhcCCCCCChhhH
Q 043594 8 STRNIRGGTQYQCLAVRSGFV----ANVYVGSSLISFCGKC------------------GENIDVYKMFEKMPVRNVVSW 65 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~y~~~------------------g~~~~A~~~~~~m~~~~~~t~ 65 (86)
..|+..+.+++-..+.+..+. .|+.+...+++.|.+. .+.+++.++++.++.+|-.+.
T Consensus 46 ~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lLK~fLReLpePli~~~~~~~~i~~~~~~~~~~~li~~LP~~n~~~L 125 (187)
T cd04389 46 VPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLLKLWLRELEEPLIPDALYQQCISASEDPDKAVEIVQKLPIINRLVL 125 (187)
T ss_pred CCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcCHHHHHHHHHhCCHHHHHHH
Confidence 445555555555555443332 2566666666655432 345566666777776665555
Q ss_pred HHHHHH
Q 043594 66 TAIIAA 71 (86)
Q Consensus 66 ~~li~~ 71 (86)
.-++.-
T Consensus 126 ~~l~~~ 131 (187)
T cd04389 126 CYLINF 131 (187)
T ss_pred HHHHHH
Confidence 544433
No 408
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=24.30 E-value=1.8e+02 Score=17.84 Aligned_cols=35 Identities=3% Similarity=-0.179 Sum_probs=18.1
Q ss_pred cCCchhHHHHHHHHHHHHcC-------CchHHHHHHHHHHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGF-------VANVYVGSSLISFCG 42 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~li~~y~ 42 (86)
..|...+..++-+.+.+.+. ..|+.+...+++.|.
T Consensus 40 ~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fL 81 (196)
T cd04387 40 ISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLYF 81 (196)
T ss_pred eCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHH
Confidence 34555555555555443221 135666666666664
No 409
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=24.18 E-value=1.8e+02 Score=20.75 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhcCCh
Q 043594 31 VYVGSSLISFCGKCGEN 47 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~ 47 (86)
+..|.++|+.+..+|.+
T Consensus 257 ~~L~HSllS~alNigLL 273 (505)
T COG3046 257 PHLWHSLLSFALNIGLL 273 (505)
T ss_pred chhHHHHHHHHhhccCC
Confidence 33444444444444443
No 410
>PRK11906 transcriptional regulator; Provisional
Probab=24.07 E-value=2.8e+02 Score=19.90 Aligned_cols=71 Identities=6% Similarity=-0.024 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCCh-hhHHHHHHHHhhcCChhHhhh
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNV-VSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~-~t~~~li~~~~~~g~~~~a~~ 83 (86)
..+|.++-...+..+ .-|+.....+=....-.|+++.|...|++-. .||. .+|...=....-+|+.++|.+
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444444444433 2233333333333444555777777776543 3432 223222223344566666654
No 411
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.95 E-value=1.7e+02 Score=20.71 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=28.4
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG 45 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g 45 (86)
..++.+.|..++.+|...|..|..+.-..+..++-.-|
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 46889999999999999999887765555555444333
No 412
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.75 E-value=1.9e+02 Score=17.94 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=28.5
Q ss_pred hcCCchhHHHHHHHHHHHHc--C--C----chHHHHHHHHHHHHhcCChHHHHHhhcCCCCC--ChhhHHHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSG--F--V----ANVYVGSSLISFCGKCGENIDVYKMFEKMPVR--NVVSWTAIIAAF 72 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g--~--~----~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~t~~~li~~~ 72 (86)
...|...+.+++-+.+.+.+ . . +|+.+...+++.| |+++++| ....|..++.+.
T Consensus 41 R~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lLK~f------------LReLPePLip~~~y~~~~~~~ 104 (207)
T cd04379 41 RLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDY------------LRELPEPLITPQLYEMVLEAL 104 (207)
T ss_pred eeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHHHHH------------HHhCCCccCCHHHHHHHHHHH
Confidence 34566666666666554432 1 1 2556666666665 4555554 333445555544
No 413
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=23.75 E-value=60 Score=21.06 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHcCCchHH
Q 043594 13 RGGTQYQCLAVRSGFVANVY 32 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~ 32 (86)
..|.++++.+.+.|++|+..
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v 86 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGV 86 (269)
T ss_pred chHHHHHHHHHhcCCCcccc
Confidence 35789999999999999744
No 414
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.36 E-value=88 Score=19.17 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=32.3
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI 48 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~ 48 (86)
-.++-+++.++..+....|..|-......+.-+.-+-|+..
T Consensus 7 l~~d~~~~~~~v~~~l~~g~~~~~i~~~~l~p~m~~iG~~w 47 (197)
T TIGR02370 7 FEGEEDDVVEGAQKALDAGIDPIELIEKGLMAGMGVVGKLF 47 (197)
T ss_pred HhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999888887788777776655543
No 415
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.31 E-value=1.1e+02 Score=15.37 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChh
Q 043594 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 14 ~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~ 79 (86)
....++.++...|+-. ..-+..+-. ...+.+++.++++.+..++..+|..++.++-+.+..+
T Consensus 14 ~~~~il~~L~~~~vlt-~~e~~~i~~---~~~~~~k~~~Lld~l~~kg~~af~~F~~~L~~~~~~~ 75 (80)
T cd01671 14 DVEDVLDHLLSDGVLT-EEEYEKIRS---ESTRQDKARKLLDILPRKGPKAFQSFLQALQETDQPH 75 (80)
T ss_pred cHHHHHHHHHHcCCCC-HHHHHHHHc---CCChHHHHHHHHHHHHhcChHHHHHHHHHHHhcCChh
Confidence 4456677777766432 222222222 2337788889999888888899999999887776444
No 416
>COG4397 Mu-like prophage major head subunit gpT [General function prediction only]
Probab=22.77 E-value=1.4e+02 Score=19.43 Aligned_cols=27 Identities=7% Similarity=-0.167 Sum_probs=20.3
Q ss_pred HHHHHH-HHHcCCchHHHHHHHHHHHHh
Q 043594 17 QYQCLA-VRSGFVANVYVGSSLISFCGK 43 (86)
Q Consensus 17 ~~~~~m-~~~g~~~~~~~~~~li~~y~~ 43 (86)
-++.+| ...+.+||..++.+|-++...
T Consensus 101 Pl~~EmGRAaav~pDELVFaaL~~g~~t 128 (308)
T COG4397 101 PLFQEMGRAAAVQPDELVFAALRDGIST 128 (308)
T ss_pred HHHHHHhHhhccCchHHHHHHHHhhhhh
Confidence 467778 446799999999888776653
No 417
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=22.67 E-value=1.1e+02 Score=14.62 Aligned_cols=22 Identities=14% Similarity=-0.070 Sum_probs=10.7
Q ss_pred CCchhHHHHHHHHHHHHcCCch
Q 043594 9 TRNIRGGTQYQCLAVRSGFVAN 30 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~ 30 (86)
.|--.++..+.=.+...|+.|.
T Consensus 17 tgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 17 TGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred CCCCHHHHHHHHHHHHCCCCHH
Confidence 3444445555555555554443
No 418
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.65 E-value=1.9e+02 Score=17.55 Aligned_cols=35 Identities=29% Similarity=0.150 Sum_probs=17.7
Q ss_pred hcCCchhHHHHHHHHHHHHcCC--------chHHHHHHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFV--------ANVYVGSSLISFC 41 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~--------~~~~~~~~li~~y 41 (86)
...|+..+..++-..+-+.+.. .|+.+..++++-|
T Consensus 41 R~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~llK~f 83 (196)
T cd04395 41 RVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSF 83 (196)
T ss_pred eCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHHHHH
Confidence 3455555555655554443322 2445556666555
No 419
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=22.61 E-value=1.7e+02 Score=16.86 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
.++..-.+...+.+.++....-.+.-+=..+.+..++.+|..+|+-+
T Consensus 78 ~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 78 LVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 34444455566666676555666666666677777777777777643
No 420
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=22.51 E-value=10 Score=25.76 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=26.7
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 23 VRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 23 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
...||.||+.+|-.+ |.+-|.++++.++|+--
T Consensus 244 a~~gFTpDVkVwE~~---f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 244 AVSGFTPDVKVWEPI---FTKDGTFQEVKRVFSLK 275 (420)
T ss_pred EEecCCCCceEEEEE---eccCcchhhhhhhheec
Confidence 346899999998874 78999999999999853
No 421
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=22.50 E-value=44 Score=19.28 Aligned_cols=19 Identities=5% Similarity=-0.106 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHcCCch
Q 043594 12 IRGGTQYQCLAVRSGFVAN 30 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~ 30 (86)
...|.++.+++...|..|+
T Consensus 49 ~~HA~~l~~~i~~~gg~~~ 67 (156)
T cd01055 49 REHAMKFFDYLNDRGGRVE 67 (156)
T ss_pred HHHHHHHHHHHHHCCCCee
Confidence 5678888888888885553
No 422
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=22.48 E-value=1.2e+02 Score=15.15 Aligned_cols=45 Identities=9% Similarity=-0.125 Sum_probs=35.6
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGE 46 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~ 46 (86)
+|....+.+..-...++-+.+...|+..+..+..-.+...-+.|-
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Gl 47 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGL 47 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCC
Confidence 355566777777888888888888988888888888888877773
No 423
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=22.33 E-value=1.7e+02 Score=22.62 Aligned_cols=53 Identities=2% Similarity=-0.024 Sum_probs=30.8
Q ss_pred cCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhh
Q 043594 26 GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 26 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
.+.-|......+-+|+.+-|.-++|.+.|-+-..|-.. +..|..-++|.+|.+
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaA-----v~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAA-----VHTCVELNQWGEAVE 899 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHH-----HHHHHHHHHHHHHHH
Confidence 45556666667777777777777777776665544322 344444444444443
No 424
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.22 E-value=79 Score=19.79 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 62 VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 62 ~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+..-++++.-|.-.|+++.|.+.|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf 64 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAF 64 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHH
Confidence 345677888888888888887765
No 425
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=22.18 E-value=1.8e+02 Score=17.10 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=21.0
Q ss_pred HHHHHhhcCCCC--------CChhhHHHHHHHHhhcCChhHhh
Q 043594 48 IDVYKMFEKMPV--------RNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 48 ~~A~~~~~~m~~--------~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
.+|.++-..||. -|...+..|-.++.+-|++++++
T Consensus 33 r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 33 RKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHH
Confidence 345555555552 15566777777788888777765
No 426
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=3e+02 Score=20.28 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=51.2
Q ss_pred cCCchhHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHH--------HHHHH--hhc
Q 043594 8 STRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTA--------IIAAF--AQE 75 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~--------li~~~--~~~ 75 (86)
..+..+.|+.-|....+.- ...-.+....+--.|.+.|+-++-.++.+.+..+|..++++ .+.|+ ...
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 4677888888777776543 33334444555677999999999999999988777666544 12221 245
Q ss_pred CChhHhhhc
Q 043594 76 WEVDMCYTF 84 (86)
Q Consensus 76 g~~~~a~~~ 84 (86)
|++.||..+
T Consensus 459 n~lnEaK~~ 467 (629)
T KOG2300|consen 459 NDLNEAKRF 467 (629)
T ss_pred ccHHHHHHH
Confidence 667776654
No 427
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=22.09 E-value=2.1e+02 Score=21.36 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=7.5
Q ss_pred CChhhHHHHHHH
Q 043594 60 RNVVSWTAIIAA 71 (86)
Q Consensus 60 ~~~~t~~~li~~ 71 (86)
+|+..||.+|++
T Consensus 618 KN~iIYNaVISg 629 (782)
T PF07218_consen 618 KNMIIYNAVISG 629 (782)
T ss_pred hhhHhHHHHHHH
Confidence 466666666665
No 428
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=21.90 E-value=56 Score=19.25 Aligned_cols=21 Identities=5% Similarity=-0.039 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHcCCchHH
Q 043594 12 IRGGTQYQCLAVRSGFVANVY 32 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~ 32 (86)
...|.++++++.++|-.|+..
T Consensus 51 ~~HA~~l~~yi~~rgg~~~l~ 71 (160)
T cd00904 51 REHAEKFYKYQNERGGRVELQ 71 (160)
T ss_pred HHHHHHHHHHHHHCCCccccC
Confidence 457889999999988776543
No 429
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=21.90 E-value=1e+02 Score=14.20 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHhcCC
Q 043594 29 ANVYVGSSLISFCGKCGE 46 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~ 46 (86)
-|..+.++|+..|-..|+
T Consensus 18 ddT~v~r~l~~yY~~k~~ 35 (41)
T PF14475_consen 18 DDTHVHRVLRKYYTEKGR 35 (41)
T ss_pred chhHHHHHHHHHHHHcCC
Confidence 356788888888887654
No 430
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=21.87 E-value=90 Score=14.72 Aligned_cols=26 Identities=4% Similarity=-0.037 Sum_probs=19.9
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYV 33 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~ 33 (86)
..+..+-+.++|+.+.+.|+.++..+
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEe
Confidence 44667778889999999988877663
No 431
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=21.73 E-value=90 Score=13.41 Aligned_cols=32 Identities=9% Similarity=-0.035 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHh-cCChHHHHHh
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGK-CGENIDVYKM 53 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~ 53 (86)
+....+...||..+ .. ..++-+ .|+++.|.+.
T Consensus 4 ~~v~~L~~mGf~~~-~~----~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 4 EKVQQLMEMGFSRE-QA----REALRACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHHTS-HH-HH----HHHHHHTTTSHHHHHHH
T ss_pred HHHHHHHHcCCCHH-HH----HHHHHHcCCCHHHHHHh
Confidence 34556666687665 22 223333 3577777654
No 432
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=21.63 E-value=72 Score=21.68 Aligned_cols=20 Identities=5% Similarity=-0.152 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHcCCch
Q 043594 11 NIRGGTQYQCLAVRSGFVAN 30 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~ 30 (86)
..+..++|+++|++.|++|-
T Consensus 93 q~~Lq~kIl~RmreLGm~PV 112 (333)
T PF05089_consen 93 QAELQKKILDRMRELGMTPV 112 (333)
T ss_dssp HHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHHHHHHcCCccc
Confidence 45678899999999998874
No 433
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=21.46 E-value=1.4e+02 Score=15.50 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=9.0
Q ss_pred hhHHHHHHHHhhcCChhH
Q 043594 63 VSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 63 ~t~~~li~~~~~~g~~~~ 80 (86)
.|...|+.++-+.|.-+-
T Consensus 62 at~~~L~~AL~~i~r~Di 79 (84)
T cd08317 62 ATGNSLEKALKKIGRDDI 79 (84)
T ss_pred chHHHHHHHHHHcChHHH
Confidence 444555555555554443
No 434
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.45 E-value=1e+02 Score=15.70 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=20.5
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYV 33 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~ 33 (86)
...+..+-+.++|+.+.+.|+.+|..+
T Consensus 10 ~~~~~~g~~~~IF~~La~~~I~vDmI~ 36 (75)
T cd04935 10 GMWQQVGFLADVFAPFKKHGVSVDLVS 36 (75)
T ss_pred CCCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 344556778889999999998887663
No 435
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=21.35 E-value=2.1e+02 Score=17.39 Aligned_cols=36 Identities=3% Similarity=-0.140 Sum_probs=19.7
Q ss_pred hcCCchhHHHHHHHHHHHHcC-------CchHHHHHHHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSGF-------VANVYVGSSLISFCG 42 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~li~~y~ 42 (86)
...|+..+..++-+.+.+..- ..|+.+...+++.|.
T Consensus 41 Rv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK~fL 83 (188)
T cd04383 41 RVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLKLYF 83 (188)
T ss_pred ecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHHHHH
Confidence 345666666666555544221 235566777777663
No 436
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.22 E-value=29 Score=17.57 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=13.7
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 29 ANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
|....++-+++.+++---++++...+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~a 34 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRA 34 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544444444444443
No 437
>PF08163 NUC194: NUC194 domain; InterPro: IPR012582 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This is domain B in the catalytic subunit of DNA-dependent protein kinases.; GO: 0003677 DNA binding, 0004677 DNA-dependent protein kinase activity, 0005524 ATP binding, 0006303 double-strand break repair via nonhomologous end joining, 0005634 nucleus
Probab=21.01 E-value=1.4e+02 Score=20.80 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHH--hhcCCCCCChhhHHHHHH
Q 043594 31 VYVGSSLISFCGKCGENIDVYK--MFEKMPVRNVVSWTAIIA 70 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~--~~~~m~~~~~~t~~~li~ 70 (86)
...||+++..-++-..=++-.. +|.+.++++...|.-+|+
T Consensus 130 cAAYncl~avIs~Tq~~ekfy~~flF~e~~~K~~~lWenlID 171 (394)
T PF08163_consen 130 CAAYNCLIAVISCTQTDEKFYQVFLFKENPEKNEFLWENLID 171 (394)
T ss_pred HHHHHHHHHHHHhccchHhHHHhhhccCCCcccchhHHhhCC
Confidence 4577888877766433344333 566777788888887775
No 438
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=20.80 E-value=1e+02 Score=15.63 Aligned_cols=29 Identities=3% Similarity=-0.135 Sum_probs=21.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYV 33 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 33 (86)
.....+..+-+.++|+.+.+.|+.+|..+
T Consensus 8 ~~~m~~~~g~~~~If~~la~~~I~vd~I~ 36 (73)
T cd04934 8 SNKKSLSHGFLARIFAILDKYRLSVDLIS 36 (73)
T ss_pred cccCccccCHHHHHHHHHHHcCCcEEEEE
Confidence 33445667778889999999999888664
No 439
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=20.69 E-value=1.4e+02 Score=15.23 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=11.7
Q ss_pred hhHHHHHHHHhhcCChhHhh
Q 043594 63 VSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 63 ~t~~~li~~~~~~g~~~~a~ 82 (86)
.|...|+.++-+.|..+-|.
T Consensus 64 at~~~L~~aL~~~~~~d~a~ 83 (88)
T smart00005 64 ATLGTLLEALRKMGRDDAVE 83 (88)
T ss_pred hHHHHHHHHHHHcChHHHHH
Confidence 45666666666666555443
No 440
>PHA01782 hypothetical protein
Probab=20.68 E-value=2.2e+02 Score=17.46 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=37.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHH---hcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCCh
Q 043594 19 QCLAVRSGFVANVYVGSSLISFCG---KCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 19 ~~~m~~~g~~~~~~~~~~li~~y~---~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~ 78 (86)
...+...|=..|..+..+=++... .+|++.-|..+|+.|++- .--|+|..=+.+.|.+
T Consensus 22 i~aI~~~gk~LDe~iQ~tglsil~HvdeHGDVt~a~kL~~aMPKG--sRrnAL~~wlv~~Gkv 82 (177)
T PHA01782 22 IDAIAVRGKELDEAIQLTGLSILNHVDEHGDVTVAKKLYEAMPKG--SRRNALAEWLVKFGKV 82 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccc--chhhHHHHHHHHhCCc
Confidence 344455666777776666555544 479999999999999852 2224555555555543
No 441
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=20.58 E-value=2.8e+02 Score=18.67 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=36.8
Q ss_pred HHHHHHHHHHH--HcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCC--hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 14 GGTQYQCLAVR--SGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRN--VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 14 ~a~~~~~~m~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
-+.++..+..+ .|..+...+...++. +.+. ++++......+-..++ +-.++-.+..+++.||+ .|.++|
T Consensus 157 ig~~~L~~~lra~DG~~~~t~L~d~v~~-~f~~-d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~-~A~~Il 229 (301)
T COG2971 157 IGREALQEALRAFDGRREATPLTDAVMA-EFNL-DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDP-VAIRIL 229 (301)
T ss_pred HHHHHHHHHHHHhcCCccCChHHHHHHH-HhCC-CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCH-HHHHHH
Confidence 34444444433 255555544444443 3333 6666666555444333 66677777777777776 344443
No 442
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=20.50 E-value=1.1e+02 Score=18.37 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 62 VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 62 ~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...-+|.|.-+.+.|++++|-+++
T Consensus 144 ~~iSST~IR~~i~~G~i~~an~lL 167 (180)
T cd02064 144 ERVSSTRIREALAEGDVELANELL 167 (180)
T ss_pred cEEcHHHHHHHHHhCCHHHHHHHc
Confidence 345688899999999999998764
No 443
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=20.48 E-value=1.8e+02 Score=16.70 Aligned_cols=34 Identities=15% Similarity=-0.115 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG 45 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g 45 (86)
+++-.+|..+=...|-.+..++++++.+++..-|
T Consensus 6 ~e~I~~iVe~RrqEGA~~~Dvs~SSv~sMLLELG 39 (118)
T PRK13713 6 YEKINAIVEERRQEGAREKDVSFSSVASMLLELG 39 (118)
T ss_pred HHHHHHHHHHHHHcCCCccCccHHHHHHHHHHHh
Confidence 3455566666677799999999999999988766
No 444
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=20.27 E-value=2.4e+02 Score=19.08 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCChHHHHHhhcCC----CCCC---------hhhHHHHHHHHhhcCChhHhhhc
Q 043594 35 SSLISFCGKCGENIDVYKMFEKM----PVRN---------VVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 35 ~~li~~y~~~g~~~~A~~~~~~m----~~~~---------~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
..++..+..||+..++.+-...- ..|| +.+-++|+-+-|..||.++-+++
T Consensus 67 alvvlthvaCk~aKelDDkvqdkskqaekeNqinWwkysGltiaTslLlaaC~agD~~KqiEl 129 (398)
T PF05917_consen 67 ALVVLTHVACKKAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSAGDIDKQIEL 129 (398)
T ss_pred hhHhhHHHHhcccchhhHHHhhhhhhccCccccchhhhccHHHHHHHHHHHHhccchhHHHHH
Confidence 34455667788888877776322 2344 44558899999999999876554
No 445
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.15 E-value=2.5e+02 Score=17.98 Aligned_cols=71 Identities=6% Similarity=-0.055 Sum_probs=38.3
Q ss_pred CchhHHHHHHHHHHHHcC----CchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-CChhhHHHHHHHHhhcCChhH
Q 043594 10 RNIRGGTQYQCLAVRSGF----VANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~t~~~li~~~~~~g~~~~ 80 (86)
....++.+.+......+- ..++-.-.+++....+.|..+.-..+++.... ++..-...++.+.+-..+.+.
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~ 219 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPEL 219 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHH
Confidence 346677888888777422 34555666666777777776655555554432 344445566666655555443
Done!