Query 043594
Match_columns 86
No_of_seqs 120 out of 1599
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 99.9 7.5E-23 2.6E-27 137.6 5.1 86 1-86 110-199 (501)
2 3spa_A Mtrpol, DNA-directed RN 99.9 3.3E-22 1.1E-26 142.4 4.4 85 1-85 132-224 (1134)
3 4g26_A Pentatricopeptide repea 99.8 9.4E-22 3.2E-26 132.3 6.4 83 3-85 33-128 (501)
4 3spa_A Mtrpol, DNA-directed RN 99.7 5.3E-18 1.8E-22 121.2 0.5 84 1-84 170-258 (1134)
5 2xpi_A Anaphase-promoting comp 99.2 6.3E-11 2.1E-15 79.0 6.4 83 2-86 90-174 (597)
6 2xpi_A Anaphase-promoting comp 99.1 1.6E-10 5.6E-15 77.0 6.6 83 2-86 123-224 (597)
7 1b89_A Protein (clathrin heavy 98.4 2.7E-08 9.2E-13 66.6 0.3 79 2-85 67-145 (449)
8 1na0_A Designed protein CTPR3; 98.4 9.2E-07 3.1E-11 47.2 6.4 81 4-85 17-100 (125)
9 1w3b_A UDP-N-acetylglucosamine 98.4 6.6E-07 2.2E-11 57.0 6.2 80 5-85 280-362 (388)
10 2fo7_A Synthetic consensus TPR 98.4 8.3E-07 2.9E-11 47.7 5.8 77 8-85 47-126 (136)
11 2fo7_A Synthetic consensus TPR 98.4 9.4E-07 3.2E-11 47.5 5.6 81 4-85 9-92 (136)
12 3mkr_A Coatomer subunit epsilo 98.3 3.4E-06 1.2E-10 52.8 7.9 80 4-85 73-153 (291)
13 1w3b_A UDP-N-acetylglucosamine 98.3 1.5E-06 5.2E-11 55.3 6.0 81 4-85 245-328 (388)
14 2gw1_A Mitochondrial precursor 98.2 2.3E-06 8E-11 55.7 6.0 79 5-85 15-96 (514)
15 2y4t_A DNAJ homolog subfamily 98.2 3.7E-06 1.3E-10 54.1 6.4 81 4-85 34-117 (450)
16 2y4t_A DNAJ homolog subfamily 98.2 2.7E-06 9.4E-11 54.8 5.2 79 6-85 153-234 (450)
17 3gyz_A Chaperone protein IPGC; 98.2 7.5E-06 2.6E-10 47.1 6.3 80 5-85 45-127 (151)
18 4gco_A Protein STI-1; structur 98.2 8.8E-06 3E-10 45.0 6.3 80 5-85 22-104 (126)
19 4eqf_A PEX5-related protein; a 98.1 5.3E-06 1.8E-10 52.3 5.7 82 4-85 185-270 (365)
20 1b89_A Protein (clathrin heavy 98.1 3.8E-06 1.3E-10 56.3 4.9 70 4-84 130-199 (449)
21 2ho1_A Type 4 fimbrial biogene 98.1 6.7E-06 2.3E-10 49.2 5.3 77 7-84 82-163 (252)
22 2vq2_A PILW, putative fimbrial 98.1 8.7E-06 3E-10 47.5 5.6 79 7-85 87-170 (225)
23 3as5_A MAMA; tetratricopeptide 98.1 1.4E-05 4.9E-10 45.1 6.2 76 8-84 54-132 (186)
24 2pl2_A Hypothetical conserved 98.1 9.3E-06 3.2E-10 48.5 5.6 80 5-86 127-209 (217)
25 1xnf_A Lipoprotein NLPI; TPR, 98.1 1.4E-05 4.9E-10 48.1 6.4 79 6-85 53-134 (275)
26 3as5_A MAMA; tetratricopeptide 98.1 1.2E-05 4.2E-10 45.3 5.8 80 5-85 85-167 (186)
27 4eqf_A PEX5-related protein; a 98.1 9.5E-06 3.2E-10 51.1 5.8 80 5-85 74-156 (365)
28 2kck_A TPR repeat; tetratricop 98.1 2E-05 6.8E-10 41.1 6.2 80 5-85 15-100 (112)
29 3k9i_A BH0479 protein; putativ 98.0 2.4E-06 8.2E-11 46.3 2.5 78 8-85 2-84 (117)
30 2xcb_A PCRH, regulatory protei 98.0 2.1E-05 7.3E-10 43.9 6.4 80 5-85 27-109 (142)
31 3uq3_A Heat shock protein STI1 98.0 5.5E-06 1.9E-10 49.3 4.1 79 5-85 14-102 (258)
32 2ho1_A Type 4 fimbrial biogene 98.0 1.9E-05 6.5E-10 47.2 6.5 78 7-84 116-197 (252)
33 2vgx_A Chaperone SYCD; alterna 98.0 2.3E-05 7.9E-10 44.4 6.4 80 5-85 30-112 (148)
34 2vq2_A PILW, putative fimbrial 98.0 2.5E-05 8.5E-10 45.5 6.4 77 7-84 53-135 (225)
35 3mkr_A Coatomer subunit epsilo 98.0 1E-05 3.6E-10 50.6 5.0 79 5-85 139-223 (291)
36 3upv_A Heat shock protein STI1 98.0 2.9E-05 9.9E-10 42.1 6.3 80 5-85 13-95 (126)
37 1elr_A TPR2A-domain of HOP; HO 98.0 1.1E-05 3.9E-10 43.2 4.4 80 5-85 13-102 (131)
38 1elw_A TPR1-domain of HOP; HOP 98.0 3.5E-05 1.2E-09 40.5 6.2 80 5-85 13-95 (118)
39 3cv0_A Peroxisome targeting si 98.0 3.1E-05 1.1E-09 47.5 6.7 77 7-84 183-262 (327)
40 3cv0_A Peroxisome targeting si 98.0 2.7E-05 9.1E-10 47.8 6.4 79 6-85 148-229 (327)
41 2lni_A Stress-induced-phosphop 98.0 2.1E-05 7.1E-10 42.4 5.2 80 5-85 25-107 (133)
42 3sz7_A HSC70 cochaperone (SGT) 97.9 3.5E-05 1.2E-09 43.8 6.4 80 5-85 20-102 (164)
43 2q7f_A YRRB protein; TPR, prot 97.9 2.2E-05 7.7E-10 46.4 5.7 9 44-52 104-112 (243)
44 1fch_A Peroxisomal targeting s 97.9 2.4E-05 8E-10 49.1 6.0 79 6-85 227-308 (368)
45 2q7f_A YRRB protein; TPR, prot 97.9 3.3E-05 1.1E-09 45.6 6.4 80 5-85 100-182 (243)
46 2vyi_A SGTA protein; chaperone 97.9 4.7E-05 1.6E-09 40.6 6.4 80 5-85 21-103 (131)
47 1fch_A Peroxisomal targeting s 97.9 2.9E-05 9.8E-10 48.7 6.0 80 5-85 73-155 (368)
48 3q49_B STIP1 homology and U bo 97.9 5.1E-05 1.7E-09 41.4 6.4 80 5-85 18-100 (137)
49 3uq3_A Heat shock protein STI1 97.9 4.6E-05 1.6E-09 45.2 6.4 80 5-85 148-230 (258)
50 2xev_A YBGF; tetratricopeptide 97.8 6.3E-05 2.2E-09 40.6 5.5 80 5-85 11-99 (129)
51 2dba_A Smooth muscle cell asso 97.8 7.3E-05 2.5E-09 41.0 5.8 79 5-85 37-122 (148)
52 3hym_B Cell division cycle pro 97.8 5.2E-05 1.8E-09 46.5 5.5 79 6-85 169-259 (330)
53 3hym_B Cell division cycle pro 97.8 4.4E-05 1.5E-09 46.9 5.1 82 4-85 201-293 (330)
54 1hh8_A P67PHOX, NCF-2, neutrop 97.8 4.4E-05 1.5E-09 44.6 4.7 77 5-85 15-94 (213)
55 1hxi_A PEX5, peroxisome target 97.7 5.2E-05 1.8E-09 41.5 4.6 80 5-85 26-108 (121)
56 1a17_A Serine/threonine protei 97.7 0.00013 4.4E-09 40.7 6.3 79 6-85 23-104 (166)
57 1xnf_A Lipoprotein NLPI; TPR, 97.7 5.7E-05 2E-09 45.4 5.0 80 6-85 15-100 (275)
58 4ga2_A E3 SUMO-protein ligase 97.7 8.6E-05 2.9E-09 42.0 5.5 79 5-84 40-121 (150)
59 3vtx_A MAMA; tetratricopeptide 97.7 0.00014 4.9E-09 41.6 6.4 79 6-85 83-164 (184)
60 4i17_A Hypothetical protein; T 97.7 0.00011 3.8E-09 43.5 5.9 80 6-85 17-99 (228)
61 4gcn_A Protein STI-1; structur 97.7 7.6E-05 2.6E-09 41.1 4.6 80 5-85 17-106 (127)
62 3u4t_A TPR repeat-containing p 97.7 8.2E-05 2.8E-09 44.8 4.9 79 7-85 48-131 (272)
63 3edt_B KLC 2, kinesin light ch 97.6 6.7E-05 2.3E-09 45.0 4.4 82 4-85 93-192 (283)
64 3ieg_A DNAJ homolog subfamily 97.6 0.00014 4.9E-09 44.9 6.0 81 4-85 128-211 (359)
65 3nf1_A KLC 1, kinesin light ch 97.6 6.7E-05 2.3E-09 45.7 4.3 82 4-85 161-301 (311)
66 3nf1_A KLC 1, kinesin light ch 97.6 6.8E-05 2.3E-09 45.7 4.2 82 4-85 35-134 (311)
67 2c2l_A CHIP, carboxy terminus 97.6 0.0003 1E-08 43.6 7.0 80 5-85 13-95 (281)
68 3ieg_A DNAJ homolog subfamily 97.6 0.00017 5.9E-09 44.5 5.8 80 5-85 12-94 (359)
69 1hh8_A P67PHOX, NCF-2, neutrop 97.6 0.00021 7.2E-09 41.7 5.8 80 5-85 46-144 (213)
70 3fp2_A TPR repeat-containing p 97.6 0.00012 4.2E-09 47.9 5.2 80 5-85 34-116 (537)
71 2ond_A Cleavage stimulation fa 97.6 0.00011 3.7E-09 45.9 4.6 73 13-85 81-157 (308)
72 3urz_A Uncharacterized protein 97.6 0.00019 6.4E-09 42.5 5.4 78 6-85 14-111 (208)
73 3qww_A SET and MYND domain-con 97.5 0.00019 6.6E-09 47.7 5.8 78 8-85 310-405 (433)
74 2l6j_A TPR repeat-containing p 97.5 0.00022 7.4E-09 37.3 4.9 80 5-85 13-101 (111)
75 3vtx_A MAMA; tetratricopeptide 97.5 0.0004 1.4E-08 39.7 6.4 51 6-57 15-65 (184)
76 3fp2_A TPR repeat-containing p 97.5 0.00032 1.1E-08 46.0 6.5 76 8-84 288-366 (537)
77 3u4t_A TPR repeat-containing p 97.5 0.00017 6E-09 43.3 4.9 80 5-85 12-97 (272)
78 2gw1_A Mitochondrial precursor 97.5 0.00012 4.1E-09 47.6 4.3 78 6-85 247-327 (514)
79 3n71_A Histone lysine methyltr 97.5 0.00023 7.9E-09 48.1 5.7 80 6-85 319-416 (490)
80 2pl2_A Hypothetical conserved 97.5 0.0002 6.7E-09 42.7 4.7 76 8-84 51-140 (217)
81 3rkv_A Putative peptidylprolyl 97.5 0.00032 1.1E-08 39.6 5.4 81 5-85 20-120 (162)
82 2e2e_A Formate-dependent nitri 97.5 0.00041 1.4E-08 39.5 5.8 80 5-85 53-138 (177)
83 3edt_B KLC 2, kinesin light ch 97.4 0.00014 4.8E-09 43.5 3.7 82 4-85 51-150 (283)
84 1p5q_A FKBP52, FK506-binding p 97.4 0.00044 1.5E-08 44.0 5.8 81 5-85 156-253 (336)
85 2fbn_A 70 kDa peptidylprolyl i 97.4 0.00061 2.1E-08 39.6 6.0 81 5-85 47-145 (198)
86 1wao_1 Serine/threonine protei 97.3 0.0013 4.4E-08 43.9 7.9 80 5-85 15-97 (477)
87 3mv2_B Coatomer subunit epsilo 97.3 0.00051 1.7E-08 44.1 5.6 81 3-85 143-234 (310)
88 4abn_A Tetratricopeptide repea 97.3 0.00033 1.1E-08 46.5 4.9 80 5-85 111-202 (474)
89 2ond_A Cleavage stimulation fa 97.3 0.00043 1.5E-08 43.1 5.1 76 9-85 182-264 (308)
90 3qwp_A SET and MYND domain-con 97.3 0.00029 9.8E-09 46.8 4.2 81 5-85 296-394 (429)
91 4gyw_A UDP-N-acetylglucosamine 97.3 0.00055 1.9E-08 48.2 5.7 76 8-84 21-99 (723)
92 4gyw_A UDP-N-acetylglucosamine 97.3 0.00055 1.9E-08 48.2 5.7 80 5-85 52-134 (723)
93 2kat_A Uncharacterized protein 97.2 0.00057 1.9E-08 36.4 4.4 71 14-85 3-76 (115)
94 1a17_A Serine/threonine protei 97.2 0.00088 3E-08 37.2 5.2 80 5-85 56-140 (166)
95 3qou_A Protein YBBN; thioredox 97.2 0.0051 1.7E-07 38.1 9.1 80 5-85 126-242 (287)
96 4i17_A Hypothetical protein; T 97.1 0.0018 6.1E-08 38.2 6.3 80 5-85 51-140 (228)
97 1na0_A Designed protein CTPR3; 97.1 0.0007 2.4E-08 35.5 4.0 56 30-85 8-66 (125)
98 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0018 6E-08 41.3 6.4 79 5-85 188-287 (338)
99 4ga2_A E3 SUMO-protein ligase 97.1 0.00017 5.8E-09 40.7 1.4 77 7-85 8-88 (150)
100 2e2e_A Formate-dependent nitri 97.1 0.00067 2.3E-08 38.6 3.9 80 5-85 19-104 (177)
101 3ro2_A PINS homolog, G-protein 97.1 0.00099 3.4E-08 40.5 4.9 81 5-85 14-106 (338)
102 2vsy_A XCC0866; transferase, g 97.0 0.0011 3.6E-08 44.6 5.0 75 9-84 36-113 (568)
103 3ma5_A Tetratricopeptide repea 97.0 0.00091 3.1E-08 35.1 3.9 51 6-57 17-67 (100)
104 1ihg_A Cyclophilin 40; ppiase 97.0 0.0033 1.1E-07 40.7 7.0 81 5-85 232-330 (370)
105 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.002 6.9E-08 42.6 6.0 81 5-85 277-374 (457)
106 1ouv_A Conserved hypothetical 96.9 0.0022 7.4E-08 38.8 5.4 17 9-25 55-71 (273)
107 3ro3_A PINS homolog, G-protein 96.9 0.00057 1.9E-08 37.4 2.6 81 5-85 18-112 (164)
108 1ouv_A Conserved hypothetical 96.9 0.0026 9E-08 38.5 5.7 77 6-85 16-101 (273)
109 2vsy_A XCC0866; transferase, g 96.9 0.0029 9.9E-08 42.5 6.3 80 5-85 66-151 (568)
110 3u3w_A Transcriptional activat 96.9 0.0022 7.6E-08 39.5 5.3 79 7-85 126-219 (293)
111 2ooe_A Cleavage stimulation fa 96.9 0.0009 3.1E-08 44.6 3.7 72 14-85 304-379 (530)
112 2h6f_A Protein farnesyltransfe 96.9 0.002 6.8E-08 42.0 5.2 78 7-85 108-189 (382)
113 2vyi_A SGTA protein; chaperone 96.8 0.0045 1.5E-07 32.5 5.8 73 5-78 55-130 (131)
114 4a1s_A PINS, partner of inscut 96.8 0.0017 5.7E-08 41.3 4.6 81 5-85 57-149 (411)
115 4abn_A Tetratricopeptide repea 96.8 0.0012 4E-08 43.9 3.9 75 10-85 193-281 (474)
116 3sf4_A G-protein-signaling mod 96.7 0.0026 9E-08 39.9 4.9 81 5-85 18-110 (406)
117 2l6j_A TPR repeat-containing p 96.7 0.0024 8.4E-08 33.1 4.1 57 29-85 2-61 (111)
118 2h6f_A Protein farnesyltransfe 96.7 0.002 6.9E-08 42.0 4.4 79 6-85 141-223 (382)
119 3gw4_A Uncharacterized protein 96.7 0.0015 5.1E-08 37.5 3.3 81 5-85 75-170 (203)
120 3ro2_A PINS homolog, G-protein 96.7 0.0019 6.4E-08 39.3 3.7 80 6-85 233-326 (338)
121 4a1s_A PINS, partner of inscut 96.6 0.0031 1.1E-07 40.0 4.7 81 5-85 272-366 (411)
122 1na3_A Designed protein CTPR2; 96.6 0.011 3.9E-07 29.4 6.1 68 6-74 19-89 (91)
123 2qfc_A PLCR protein; TPR, HTH, 96.6 0.0041 1.4E-07 38.3 5.1 80 6-85 125-219 (293)
124 1na3_A Designed protein CTPR2; 96.6 0.0035 1.2E-07 31.3 4.0 56 30-85 8-66 (91)
125 2lni_A Stress-induced-phosphop 96.6 0.0031 1.1E-07 33.5 4.0 58 28-85 13-73 (133)
126 3gw4_A Uncharacterized protein 96.6 0.0032 1.1E-07 36.0 4.3 78 7-85 3-89 (203)
127 2hr2_A Hypothetical protein; a 96.6 0.007 2.4E-07 35.3 5.6 80 6-85 21-125 (159)
128 1qqe_A Vesicular transport pro 96.5 0.005 1.7E-07 38.1 5.1 81 5-85 126-222 (292)
129 3gyz_A Chaperone protein IPGC; 96.5 0.0036 1.2E-07 35.7 4.0 55 31-85 36-93 (151)
130 3sf4_A G-protein-signaling mod 96.5 0.0034 1.2E-07 39.4 4.3 81 5-85 236-330 (406)
131 2ooe_A Cleavage stimulation fa 96.5 0.0058 2E-07 40.7 5.4 77 8-85 403-486 (530)
132 3mv2_B Coatomer subunit epsilo 96.5 0.0031 1.1E-07 40.4 3.9 82 4-85 108-201 (310)
133 1wao_1 Serine/threonine protei 96.5 0.0026 8.9E-08 42.4 3.6 80 5-85 49-133 (477)
134 2r5s_A Uncharacterized protein 96.4 0.0072 2.5E-07 34.4 5.1 69 15-85 93-167 (176)
135 3ro3_A PINS homolog, G-protein 96.4 0.0027 9.2E-08 34.6 3.1 81 5-85 58-152 (164)
136 1elw_A TPR1-domain of HOP; HOP 96.4 0.0047 1.6E-07 31.9 3.7 56 30-85 3-61 (118)
137 2dba_A Smooth muscle cell asso 96.3 0.0059 2E-07 33.0 4.0 57 29-85 26-88 (148)
138 3ulq_A Response regulator aspa 96.3 0.0064 2.2E-07 38.6 4.7 81 5-85 193-287 (383)
139 1qqe_A Vesicular transport pro 96.3 0.024 8.1E-07 35.0 7.1 82 4-85 166-263 (292)
140 3qky_A Outer membrane assembly 96.3 0.0096 3.3E-07 35.8 5.2 52 6-57 62-123 (261)
141 2kck_A TPR repeat; tetratricop 96.3 0.0024 8.2E-08 32.8 2.2 55 31-85 6-63 (112)
142 2ifu_A Gamma-SNAP; membrane fu 96.3 0.0042 1.4E-07 38.7 3.7 79 6-85 126-218 (307)
143 1elr_A TPR2A-domain of HOP; HO 96.2 0.0059 2E-07 32.1 3.7 55 31-85 4-61 (131)
144 2vgx_A Chaperone SYCD; alterna 96.2 0.007 2.4E-07 33.9 4.0 56 30-85 20-78 (148)
145 3q49_B STIP1 homology and U bo 96.2 0.0076 2.6E-07 32.4 4.1 57 29-85 7-66 (137)
146 3urz_A Uncharacterized protein 96.2 0.012 4E-07 34.6 5.0 70 5-75 63-135 (208)
147 3q15_A PSP28, response regulat 96.1 0.0059 2E-07 38.8 3.9 81 5-85 191-284 (378)
148 2qfc_A PLCR protein; TPR, HTH, 96.1 0.0048 1.6E-07 38.0 3.2 80 5-84 164-259 (293)
149 3sz7_A HSC70 cochaperone (SGT) 96.1 0.0082 2.8E-07 33.7 3.9 56 30-85 10-68 (164)
150 2ifu_A Gamma-SNAP; membrane fu 96.0 0.005 1.7E-07 38.3 3.1 80 5-85 85-178 (307)
151 3u3w_A Transcriptional activat 96.0 0.0052 1.8E-07 37.9 3.1 81 5-85 164-260 (293)
152 3upv_A Heat shock protein STI1 96.0 0.011 3.6E-07 31.6 4.0 55 31-85 4-61 (126)
153 2pzi_A Probable serine/threoni 96.0 0.0097 3.3E-07 41.3 4.5 78 8-85 403-490 (681)
154 3ma5_A Tetratricopeptide repea 95.9 0.022 7.5E-07 29.6 5.0 56 30-85 6-64 (100)
155 2kc7_A BFR218_protein; tetratr 95.9 0.0057 1.9E-07 31.3 2.6 53 5-58 9-62 (99)
156 3qky_A Outer membrane assembly 95.9 0.0066 2.3E-07 36.5 3.2 79 5-85 24-120 (261)
157 4gco_A Protein STI-1; structur 95.9 0.0057 1.9E-07 33.4 2.6 53 33-85 15-70 (126)
158 4f3v_A ESX-1 secretion system 95.9 0.0077 2.7E-07 38.1 3.5 78 6-85 112-194 (282)
159 2xcb_A PCRH, regulatory protei 95.9 0.013 4.3E-07 32.3 4.0 54 32-85 19-75 (142)
160 2yhc_A BAMD, UPF0169 lipoprote 95.8 0.01 3.4E-07 35.2 3.8 54 5-58 13-68 (225)
161 4gcn_A Protein STI-1; structur 95.8 0.014 4.8E-07 31.8 4.0 53 33-85 10-65 (127)
162 1p5q_A FKBP52, FK506-binding p 95.8 0.022 7.5E-07 36.1 5.4 77 5-82 205-284 (336)
163 3k9i_A BH0479 protein; putativ 95.8 0.031 1.1E-06 29.6 5.2 69 5-74 36-109 (117)
164 2p58_C Putative type III secre 95.7 0.099 3.4E-06 28.5 6.9 57 12-70 23-79 (116)
165 2pzi_A Probable serine/threoni 95.7 0.0099 3.4E-07 41.2 3.6 74 6-80 443-519 (681)
166 2uwj_G Type III export protein 95.6 0.095 3.2E-06 28.6 6.6 65 12-80 22-86 (115)
167 3qou_A Protein YBBN; thioredox 95.6 0.051 1.7E-06 33.5 6.5 60 27-86 113-175 (287)
168 3rjv_A Putative SEL1 repeat pr 95.5 0.024 8.2E-07 33.4 4.5 72 11-85 68-152 (212)
169 1hz4_A MALT regulatory protein 95.5 0.021 7.2E-07 35.9 4.4 81 5-85 102-197 (373)
170 3ulq_A Response regulator aspa 95.4 0.037 1.3E-06 35.1 5.4 51 6-56 234-289 (383)
171 1hz4_A MALT regulatory protein 95.4 0.084 2.9E-06 33.1 6.9 80 6-85 184-276 (373)
172 2kat_A Uncharacterized protein 95.3 0.051 1.7E-06 28.5 5.0 69 5-74 28-101 (115)
173 2r5s_A Uncharacterized protein 95.3 0.056 1.9E-06 30.6 5.5 54 5-59 15-68 (176)
174 3n71_A Histone lysine methyltr 95.1 0.02 6.9E-07 38.6 3.6 83 3-85 358-458 (490)
175 2yhc_A BAMD, UPF0169 lipoprote 95.1 0.015 5.2E-07 34.4 2.8 76 8-85 108-207 (225)
176 4e6h_A MRNA 3'-END-processing 94.9 0.073 2.5E-06 37.4 6.0 73 11-84 485-563 (679)
177 1xi4_A Clathrin heavy chain; a 94.8 0.073 2.5E-06 40.8 6.0 54 30-85 1104-1157(1630)
178 3rjv_A Putative SEL1 repeat pr 94.8 0.17 5.9E-06 29.6 6.8 76 6-85 28-112 (212)
179 1xi4_A Clathrin heavy chain; a 94.7 0.1 3.6E-06 40.0 6.7 50 3-54 1141-1190(1630)
180 2fbn_A 70 kDa peptidylprolyl i 94.7 0.059 2E-06 31.0 4.5 77 5-82 97-176 (198)
181 2kc7_A BFR218_protein; tetratr 94.6 0.025 8.5E-07 28.8 2.4 48 38-85 7-58 (99)
182 4g1t_A Interferon-induced prot 94.5 0.056 1.9E-06 34.9 4.4 82 5-86 343-454 (472)
183 3q15_A PSP28, response regulat 94.5 0.17 5.7E-06 32.1 6.5 51 6-56 232-286 (378)
184 1klx_A Cysteine rich protein B 94.4 0.032 1.1E-06 30.9 2.8 74 9-85 38-120 (138)
185 2xev_A YBGF; tetratricopeptide 94.4 0.15 5.3E-06 26.7 5.5 52 5-58 48-103 (129)
186 1kt0_A FKBP51, 51 kDa FK506-bi 94.3 0.085 2.9E-06 34.8 5.0 77 5-82 326-405 (457)
187 1klx_A Cysteine rich protein B 94.2 0.2 6.9E-06 27.5 5.8 77 4-85 3-84 (138)
188 4e6h_A MRNA 3'-END-processing 94.1 0.061 2.1E-06 37.8 4.1 78 8-86 446-528 (679)
189 2if4_A ATFKBP42; FKBP-like, al 94.0 0.17 5.8E-06 32.1 5.8 79 5-84 239-321 (338)
190 2xm6_A Protein corresponding t 93.9 0.16 5.6E-06 33.3 5.7 14 11-24 166-179 (490)
191 1hxi_A PEX5, peroxisome target 93.8 0.081 2.8E-06 28.4 3.6 53 5-58 60-112 (121)
192 4g1t_A Interferon-induced prot 93.8 0.067 2.3E-06 34.5 3.7 56 30-85 50-117 (472)
193 2c2l_A CHIP, carboxy terminus 93.6 0.095 3.3E-06 32.2 4.1 56 30-85 3-61 (281)
194 3qww_A SET and MYND domain-con 93.4 0.18 6.3E-06 33.5 5.3 55 3-57 347-408 (433)
195 3mkq_B Coatomer subunit alpha; 93.1 0.39 1.3E-05 28.4 5.9 72 8-85 17-112 (177)
196 2xm6_A Protein corresponding t 93.1 0.27 9.4E-06 32.2 5.8 7 76-82 201-207 (490)
197 2uy1_A Cleavage stimulation fa 93.1 0.47 1.6E-05 31.8 7.0 71 11-83 335-405 (493)
198 1ihg_A Cyclophilin 40; ppiase 92.7 0.21 7.1E-06 32.2 4.7 78 5-83 282-362 (370)
199 4b4t_Q 26S proteasome regulato 92.2 0.59 2E-05 29.7 6.3 78 8-85 107-198 (434)
200 3rkv_A Putative peptidylprolyl 91.8 0.39 1.3E-05 26.5 4.7 57 5-62 72-130 (162)
201 3qwp_A SET and MYND domain-con 91.7 0.31 1.1E-05 32.3 4.7 55 3-57 336-397 (429)
202 4f3v_A ESX-1 secretion system 91.5 0.6 2.1E-05 29.5 5.7 51 36-86 107-159 (282)
203 2v5f_A Prolyl 4-hydroxylase su 91.5 0.82 2.8E-05 23.8 5.7 56 6-61 15-78 (104)
204 1wy6_A Hypothetical protein ST 91.3 0.39 1.3E-05 27.8 4.2 56 3-59 98-153 (172)
205 1zu2_A Mitochondrial import re 90.8 0.078 2.7E-06 30.8 1.0 80 6-86 12-115 (158)
206 3mkq_A Coatomer beta'-subunit; 90.3 0.62 2.1E-05 32.1 5.3 44 9-58 665-708 (814)
207 3e4b_A ALGK; tetratricopeptide 90.2 1.9 6.6E-05 28.2 7.4 72 9-85 264-345 (452)
208 2v5f_A Prolyl 4-hydroxylase su 90.1 0.92 3.1E-05 23.6 4.9 56 30-85 4-69 (104)
209 4b4t_Q 26S proteasome regulato 89.9 0.59 2E-05 29.7 4.7 81 5-85 144-239 (434)
210 3bee_A Putative YFRE protein; 89.9 1.2 4E-05 23.0 5.1 48 12-61 25-75 (93)
211 1pc2_A Mitochondria fission pr 89.8 0.32 1.1E-05 28.1 3.0 46 11-58 50-98 (152)
212 3ly7_A Transcriptional activat 88.9 0.67 2.3E-05 30.5 4.4 58 28-85 274-333 (372)
213 2ff4_A Probable regulatory pro 88.8 1 3.6E-05 29.3 5.3 51 6-57 181-231 (388)
214 3bee_A Putative YFRE protein; 88.8 0.76 2.6E-05 23.7 3.9 56 30-85 5-66 (93)
215 3e4b_A ALGK; tetratricopeptide 88.4 1.3 4.5E-05 29.0 5.7 13 44-56 264-276 (452)
216 2hr2_A Hypothetical protein; a 87.9 0.31 1E-05 28.3 2.1 53 33-85 13-80 (159)
217 3ly7_A Transcriptional activat 86.7 1.5 5.3E-05 28.8 5.1 55 9-65 290-346 (372)
218 2ff4_A Probable regulatory pro 86.4 0.8 2.7E-05 29.8 3.7 52 35-86 175-229 (388)
219 3mkq_A Coatomer beta'-subunit; 86.1 1.5 5.1E-05 30.2 5.0 45 39-85 660-704 (814)
220 2uy1_A Cleavage stimulation fa 85.3 0.99 3.4E-05 30.3 3.7 76 9-85 299-377 (493)
221 3u64_A Protein TP_0956; tetrat 83.1 3.3 0.00011 26.5 5.2 72 12-85 179-263 (301)
222 4gns_B Protein CSD3, chitin bi 81.2 4.1 0.00014 29.3 5.6 49 8-58 349-398 (754)
223 1v54_E Cytochrome C oxidase po 78.7 4.6 0.00016 21.9 4.1 57 14-70 28-87 (109)
224 4h7y_A Dual specificity protei 77.4 7.2 0.00024 22.7 4.9 61 10-71 74-137 (161)
225 1pc2_A Mitochondria fission pr 76.6 7.4 0.00025 22.3 4.9 82 3-85 5-94 (152)
226 3mkq_B Coatomer subunit alpha; 72.3 3.9 0.00013 24.1 3.0 44 40-85 14-57 (177)
227 2nsz_A Programmed cell death p 72.1 3.4 0.00012 22.8 2.7 41 3-44 14-54 (129)
228 2cos_A Serine/threonine protei 72.0 6 0.00021 18.7 3.1 44 13-61 7-52 (54)
229 3dra_A Protein farnesyltransfe 71.6 16 0.00055 23.0 6.6 73 12-85 202-281 (306)
230 3ygs_P Procaspase 9; apoptosis 70.2 4.2 0.00014 21.3 2.7 64 17-82 25-88 (97)
231 4gns_B Protein CSD3, chitin bi 69.2 2.8 9.5E-05 30.1 2.2 47 39-85 345-394 (754)
232 3lvg_A Clathrin heavy chain 1; 68.9 1.2 4.2E-05 31.0 0.4 78 3-85 90-167 (624)
233 1dce_A Protein (RAB geranylger 67.2 27 0.00093 23.8 6.8 63 11-74 124-190 (567)
234 2nsz_A Programmed cell death p 66.5 8.7 0.0003 21.1 3.6 43 33-75 9-54 (129)
235 2ion_A PDCD4, programmed cell 65.1 2.7 9.2E-05 24.0 1.3 21 3-23 16-36 (152)
236 3cqc_A Nuclear pore complex pr 64.3 4.9 0.00017 25.2 2.5 27 33-59 36-62 (270)
237 2p1h_A APAF-1, apoptotic prote 63.3 13 0.00046 18.9 5.1 63 15-81 24-86 (94)
238 1zu2_A Mitochondrial import re 62.9 14 0.00047 21.2 4.0 59 11-71 61-133 (158)
239 2ion_A PDCD4, programmed cell 62.8 11 0.00037 21.5 3.6 42 33-74 11-55 (152)
240 2y69_E Cytochrome C oxidase su 62.8 19 0.00066 20.6 4.8 56 15-70 72-130 (152)
241 4a1g_A Mitotic checkpoint seri 62.4 14 0.00048 21.2 4.0 44 13-56 82-126 (152)
242 3esl_A Checkpoint serine/threo 60.5 25 0.00086 21.1 5.8 46 11-56 94-140 (202)
243 3u64_A Protein TP_0956; tetrat 59.9 18 0.00062 23.1 4.5 60 9-68 217-283 (301)
244 3f3f_C Nucleoporin NUP85; stru 59.6 2.7 9.4E-05 29.2 0.8 71 9-81 494-568 (570)
245 1wy6_A Hypothetical protein ST 58.4 22 0.00074 20.7 4.2 55 31-85 91-148 (172)
246 3mwm_A ZUR, putative metal upt 58.0 13 0.00044 20.5 3.3 47 2-48 19-65 (139)
247 2o03_A Probable zinc uptake re 57.4 10 0.00035 20.6 2.8 47 2-48 16-62 (131)
248 1dce_A Protein (RAB geranylger 56.9 43 0.0015 22.9 6.3 73 12-85 89-167 (567)
249 2fu4_A Ferric uptake regulatio 55.1 18 0.0006 17.7 3.6 58 20-78 6-68 (83)
250 4aez_C MAD3, mitotic spindle c 54.8 32 0.0011 21.0 4.8 45 12-56 130-175 (223)
251 1oai_A Nuclear RNA export fact 54.4 14 0.00046 17.7 2.6 24 9-32 33-57 (59)
252 1mzb_A Ferric uptake regulatio 53.2 15 0.0005 20.2 3.0 36 12-47 34-69 (136)
253 1dp3_A TRAM protein; helix-loo 53.1 18 0.00061 17.2 2.9 43 4-46 4-46 (55)
254 2wvi_A Mitotic checkpoint seri 53.0 31 0.0011 20.0 4.8 44 13-56 77-121 (164)
255 1k1a_A B-cell lymphoma 3-encod 52.7 13 0.00045 21.3 2.9 56 2-57 12-69 (241)
256 3txn_A 26S proteasome regulato 52.5 47 0.0016 21.9 7.0 82 4-85 107-204 (394)
257 2xig_A Ferric uptake regulatio 52.1 17 0.0006 20.3 3.2 61 17-78 13-77 (150)
258 2yqf_A Ankyrin-1; death domain 51.3 26 0.00089 18.6 4.0 46 12-59 58-103 (111)
259 1nzn_A CGI-135 protein, fissio 47.7 34 0.0012 18.9 4.3 46 12-57 54-100 (126)
260 2fe3_A Peroxide operon regulat 47.5 14 0.00047 20.5 2.3 60 18-78 9-72 (145)
261 2ko4_A Mediator of RNA polymer 45.5 30 0.001 17.7 3.1 23 52-74 24-48 (81)
262 1ug3_A EIF4GI, eukaryotic prot 45.4 1.6 5.3E-05 28.1 -2.1 26 35-60 15-40 (339)
263 4ets_A Ferric uptake regulatio 44.9 27 0.00092 19.8 3.3 40 18-58 20-59 (162)
264 2w57_A Ferric uptake regulatio 44.6 33 0.0011 19.1 3.6 36 12-47 33-68 (150)
265 4b4t_R RPN7, 26S proteasome re 42.7 9 0.00031 25.2 1.2 51 33-83 133-189 (429)
266 3l6a_A Eukaryotic translation 42.5 23 0.00079 23.0 3.0 29 33-61 14-42 (364)
267 2d2s_A Exocyst complex compone 42.2 50 0.0017 20.1 4.4 83 3-85 25-114 (235)
268 2rg8_A Programmed cell death p 41.4 16 0.00053 21.1 1.9 29 33-61 12-40 (165)
269 3hzj_A Rabgap1L, RAB GTPase-ac 40.6 25 0.00087 21.9 3.0 41 17-57 175-215 (310)
270 3eiq_C Programmed cell death p 40.3 15 0.00051 24.0 1.9 27 34-60 220-246 (358)
271 2zu6_B Programmed cell death p 39.8 14 0.00047 23.6 1.6 26 35-60 170-195 (307)
272 1ug3_A EIF4GI, eukaryotic prot 39.5 28 0.00095 22.2 3.0 73 2-75 17-90 (339)
273 2qq8_A TBC1 domain family memb 39.5 26 0.0009 22.2 2.9 40 17-56 214-253 (334)
274 2zu6_B Programmed cell death p 38.6 36 0.0012 21.6 3.4 72 2-74 172-245 (307)
275 2r9g_A AAA ATPase, central reg 38.1 60 0.002 19.6 4.1 43 2-45 17-62 (204)
276 3bge_A Predicted ATPase; struc 37.2 44 0.0015 20.1 3.4 40 2-41 10-52 (201)
277 3dra_A Protein farnesyltransfe 36.9 77 0.0026 19.8 6.4 13 45-57 124-136 (306)
278 2keb_A DNA polymerase subunit 36.8 50 0.0017 17.6 4.0 41 13-55 26-66 (101)
279 2km6_A Nacht, LRR and PYD doma 36.3 11 0.00038 20.2 0.7 31 31-61 54-84 (106)
280 4fhn_B Nucleoporin NUP120; pro 35.4 68 0.0023 23.9 4.8 78 5-82 908-991 (1139)
281 2hm2_Q ASC2, pyrin-only protei 34.7 15 0.00051 18.8 1.0 29 32-60 51-79 (89)
282 4b4t_P 26S proteasome regulato 34.0 43 0.0015 22.2 3.4 81 5-85 146-241 (445)
283 2qfz_A TBC1 domain family memb 32.2 42 0.0014 21.2 3.0 43 16-58 229-271 (345)
284 1fad_A Protein (FADD protein); 32.1 55 0.0019 16.7 3.3 41 13-55 55-95 (99)
285 3qye_A TBC1 domain family memb 32.0 27 0.00091 22.0 2.0 38 18-55 210-247 (331)
286 1zbp_A Hypothetical protein VP 32.0 97 0.0033 19.5 5.5 52 5-57 6-57 (273)
287 3ezx_A MMCP 1, monomethylamine 31.5 20 0.0007 21.4 1.4 40 8-47 14-53 (215)
288 1fkm_A Protein (GYP1P), ORF YO 31.2 59 0.002 21.2 3.6 42 16-57 216-257 (396)
289 3eyy_A Putative iron uptake re 30.8 25 0.00086 19.5 1.6 36 21-58 9-44 (145)
290 2jp7_A MRNA export factor MEX6 30.8 16 0.00055 17.3 0.7 21 11-32 34-54 (57)
291 4b4t_R RPN7, 26S proteasome re 29.9 91 0.0031 20.4 4.4 52 6-57 141-194 (429)
292 4a1n_A Nuclease EXOG, mitochon 29.4 26 0.00087 22.7 1.6 26 8-33 278-303 (335)
293 3qf2_A Nacht, LRR and PYD doma 29.3 11 0.00039 20.3 -0.0 27 32-58 51-77 (110)
294 4ewi_A Nacht, LRR and PYD doma 29.3 20 0.0007 19.4 1.0 29 31-59 55-83 (113)
295 3o48_A Mitochondria fission 1 29.2 80 0.0027 17.7 5.0 48 10-58 57-105 (134)
296 2f40_A Hypothetical protein PF 28.9 1.4 4.7E-05 23.2 -3.5 25 23-47 26-50 (96)
297 3t5v_B Nuclear mRNA export pro 28.6 46 0.0016 22.4 2.8 53 32-84 177-242 (455)
298 3bqo_A Telomeric repeat-bindin 28.6 39 0.0013 20.5 2.2 21 36-56 122-142 (211)
299 2qx5_A Nucleoporin NIC96; mRNA 27.5 47 0.0016 23.6 2.8 43 32-75 154-199 (661)
300 4b4t_S RPN3, 26S proteasome re 27.3 1E+02 0.0036 21.3 4.4 31 31-61 231-261 (523)
301 2l6a_A Nacht, LRR and PYD doma 26.7 19 0.00066 19.1 0.6 28 32-59 57-84 (102)
302 2etb_A Transient receptor pote 26.7 3.7 0.00013 24.3 -2.5 52 4-56 7-68 (256)
303 1zl8_A LIN-7; heterodimer, alp 26.0 40 0.0014 15.7 1.5 25 9-33 6-30 (53)
304 1ucp_A Pycard, ASC, apoptosis- 26.0 11 0.00038 19.4 -0.4 29 33-61 52-80 (91)
305 3ffl_A Anaphase-promoting comp 24.6 93 0.0032 18.1 3.3 80 5-85 29-145 (167)
306 3q7a_A Farnesyltransferase alp 24.3 1.5E+02 0.0051 19.1 6.0 73 11-84 69-147 (349)
307 3ph0_C ASCG; type III secretio 24.2 70 0.0024 15.3 3.4 36 34-82 25-60 (61)
308 2fv2_A RCD1 required for cell 23.7 1.2E+02 0.0041 19.1 3.8 52 6-57 183-235 (268)
309 2b7e_A PRE-mRNA processing pro 23.7 71 0.0024 15.2 2.6 30 12-41 2-31 (59)
310 3rjo_A Endoplasmic reticulum a 23.5 55 0.0019 21.3 2.4 30 3-32 204-240 (419)
311 3f3f_C Nucleoporin NUP85; stru 23.4 1.3E+02 0.0044 21.1 4.3 74 11-85 174-265 (570)
312 1pbw_A Rhogap domain, phosphat 23.3 71 0.0024 18.8 2.7 13 30-42 75-87 (216)
313 2ovj_A Mgcracgap, RAC GTPase-a 23.3 1.2E+02 0.004 17.6 6.2 38 6-43 39-82 (201)
314 2of5_H Leucine-rich repeat and 22.8 98 0.0033 16.5 4.3 46 12-58 53-98 (118)
315 1f7c_A Rhogap protein; GTPase 22.8 1.3E+02 0.0044 17.9 5.5 38 6-43 59-106 (231)
316 1y8m_A FIS1; mitochondria, unk 22.7 1.1E+02 0.0039 17.3 5.5 48 10-58 56-104 (144)
317 1ixm_A SPO0B, protein (sporula 22.7 36 0.0012 20.0 1.3 45 12-58 15-59 (192)
318 2dhy_A CUE domain-containing p 22.4 80 0.0027 15.4 2.7 16 43-58 44-59 (67)
319 3kea_A K1L; tropism, ANK repea 22.3 1.3E+02 0.0046 17.9 5.1 63 18-80 110-176 (285)
320 2ymb_A MITD1, MIT domain-conta 21.8 19 0.00066 22.5 0.0 42 16-57 3-49 (257)
321 2osa_A N-chimaerin; RHO-GAP, G 21.4 1.3E+02 0.0044 17.4 6.9 38 6-43 46-91 (202)
322 3lvg_A Clathrin heavy chain 1; 21.3 34 0.0012 24.1 1.1 56 30-85 82-139 (624)
323 2q97_T Toxofilin, actin, alpha 20.9 1E+02 0.0036 16.7 2.8 40 17-56 69-109 (129)
324 2bn5_A PSI; nuclear protein, s 20.9 52 0.0018 13.8 1.3 21 38-58 9-29 (33)
325 2end_A Endonuclease V; 1.45A { 20.9 58 0.002 18.4 1.8 15 16-30 72-86 (138)
326 1vcs_A Vesicle transport throu 20.9 1E+02 0.0035 16.1 3.9 34 10-43 45-81 (102)
327 3b7b_A Euchromatic histone-lys 20.6 80 0.0028 17.9 2.6 39 18-56 26-66 (237)
328 1lqv_C Vitamin-K dependent pro 20.3 60 0.002 13.6 1.4 10 46-55 23-32 (33)
329 2e2a_A Protein (enzyme IIA); h 20.2 43 0.0015 17.9 1.2 37 19-58 11-47 (105)
330 2dzn_A Probable 26S proteasome 20.1 88 0.003 17.6 2.7 21 37-57 39-59 (228)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.87 E-value=7.5e-23 Score=137.64 Aligned_cols=86 Identities=9% Similarity=-0.010 Sum_probs=81.2
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC----CCChhhHHHHHHHHhhcC
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP----VRNVVSWTAIIAAFAQEW 76 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~t~~~li~~~~~~g 76 (86)
+||++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..|||+||.+|++.|
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g 189 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK 189 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCC
Confidence 4789999999999999999999999999999999999999999999999999999996 589999999999999999
Q ss_pred ChhHhhhccC
Q 043594 77 EVDMCYTFIV 86 (86)
Q Consensus 77 ~~~~a~~~f~ 86 (86)
++++|.++|+
T Consensus 190 ~~d~A~~ll~ 199 (501)
T 4g26_A 190 NADKVYKTLQ 199 (501)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998873
No 2
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=3.3e-22 Score=142.42 Aligned_cols=85 Identities=6% Similarity=0.037 Sum_probs=78.7
Q ss_pred ChhcchhcCCchhHHHHHHHHHH---HHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC----CCChhhHHHHHHHHh
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAV---RSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP----VRNVVSWTAIIAAFA 73 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~t~~~li~~~~ 73 (86)
++|++||+.|++++|.++|.+|. +.|+.||++|||+||++||+.|++++|.++|++|. .||++|||+||++++
T Consensus 132 aLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glc 211 (1134)
T 3spa_A 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211 (1134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998875 56999999999999999999999999999999996 599999999999999
Q ss_pred hcCCh-hHhhhcc
Q 043594 74 QEWEV-DMCYTFI 85 (86)
Q Consensus 74 ~~g~~-~~a~~~f 85 (86)
+.|+. ++|.++|
T Consensus 212 K~G~~~e~A~~Ll 224 (1134)
T 3spa_A 212 RQDQDAGTIERCL 224 (1134)
T ss_dssp HHTCCHHHHHHHH
T ss_pred hCCCcHHHHHHHH
Confidence 99985 7787776
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.85 E-value=9.4e-22 Score=132.32 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=43.1
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC---------hHHHHHhhcCCC----CCChhhHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGE---------NIDVYKMFEKMP----VRNVVSWTAII 69 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~---------~~~A~~~~~~m~----~~~~~t~~~li 69 (86)
|++|++.|++++|.++|++|.+.|++||.++||+||++|++++. +++|.++|++|. .||.+|||+||
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45555555555555555555555555555555555555554433 344555555543 24555555555
Q ss_pred HHHhhcCChhHhhhcc
Q 043594 70 AAFAQEWEVDMCYTFI 85 (86)
Q Consensus 70 ~~~~~~g~~~~a~~~f 85 (86)
.+|++.|++++|.++|
T Consensus 113 ~~~~~~g~~~~A~~l~ 128 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMV 128 (501)
T ss_dssp HHHHHHTCHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHH
Confidence 5555555555554443
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=5.3e-18 Score=121.16 Aligned_cols=84 Identities=5% Similarity=0.056 Sum_probs=77.3
Q ss_pred ChhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh-HHHHHhhcCCC----CCChhhHHHHHHHHhhc
Q 043594 1 MPVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN-IDVYKMFEKMP----VRNVVSWTAIIAAFAQE 75 (86)
Q Consensus 1 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~----~~~~~t~~~li~~~~~~ 75 (86)
+||++||+.|++++|.++|.+|.+.|+.||.+|||+||+++|+.|+. ++|.++|++|. .||.+|||++|+++.+.
T Consensus 170 tLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 48999999999999999999999999999999999999999999985 78999999996 59999999999999998
Q ss_pred CChhHhhhc
Q 043594 76 WEVDMCYTF 84 (86)
Q Consensus 76 g~~~~a~~~ 84 (86)
+-++...++
T Consensus 250 ~vL~~Vrkv 258 (1134)
T 3spa_A 250 TVLKAVHKV 258 (1134)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHh
Confidence 877666554
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.16 E-value=6.3e-11 Score=79.02 Aligned_cols=83 Identities=6% Similarity=-0.074 Sum_probs=75.9
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChh
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~ 79 (86)
++.++.+.|++++|.+++.+|.+ ..||..++..+..+|.+.|++++|..+|+++. .+|..+|+.++.+|.+.|+++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHH
Confidence 46778899999999999999985 45888999999999999999999999999994 579999999999999999999
Q ss_pred HhhhccC
Q 043594 80 MCYTFIV 86 (86)
Q Consensus 80 ~a~~~f~ 86 (86)
+|.++|+
T Consensus 168 ~A~~~~~ 174 (597)
T 2xpi_A 168 GALNLLG 174 (597)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999874
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.11 E-value=1.6e-10 Score=77.03 Aligned_cols=83 Identities=5% Similarity=-0.183 Sum_probs=72.8
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC-CC------------------Ch
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP-VR------------------NV 62 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~------------------~~ 62 (86)
+..+|.+.|++++|.++|..+... .+++.+++.++.+|.++|++++|.++|+++. .. +.
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 456788999999999999988643 6889999999999999999999999999643 32 48
Q ss_pred hhHHHHHHHHhhcCChhHhhhccC
Q 043594 63 VSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 63 ~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
.+|+.++.+|.+.|++++|.++|+
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~ 224 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYK 224 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999998873
No 7
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.44 E-value=2.7e-08 Score=66.57 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=18.0
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHh
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a 81 (86)
+++++...|++++|...+....+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+-..|...|++++|
T Consensus 67 V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 67 VVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp --------------------------------------------CHHHHTTTTTC---C----------------CTTTH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHH
Confidence 356777889999999977766664 56688999999999999999999999975 7778999999999999999888
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
..+|
T Consensus 142 ~~~Y 145 (449)
T 1b89_A 142 KLLY 145 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 8
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=9.2e-07 Score=47.16 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=69.2
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~ 80 (86)
..+...|++++|.+++..+.+.. ..+..++..+...|.+.|++++|...|+++. ..+..+|..+...|.+.|++++
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 95 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHH
Confidence 34567899999999999998864 3457788899999999999999999999875 2467889999999999999999
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|.+.|
T Consensus 96 A~~~~ 100 (125)
T 1na0_A 96 AIEYY 100 (125)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=6.6e-07 Score=57.00 Aligned_cols=80 Identities=8% Similarity=0.053 Sum_probs=50.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+..+.+.. +.+..+++.+...|.+.|++++|.+.|+++.+ | +..+|..+...|.+.|++++|
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 3445566666666666666542 34555666666666666777777766666543 3 345666777777777777777
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 359 ~~~~ 362 (388)
T 1w3b_A 359 LMHY 362 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 10
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.41 E-value=8.3e-07 Score=47.71 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=38.2
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
..|++++|.+++..+.+.+ +.+...+..+...|.+.|++++|.+.|+++.. .+..+|..+...|.+.|+.++|.+.
T Consensus 47 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 125 (136)
T 2fo7_A 47 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHH
Confidence 3445555555555554433 22334444555555555555555555554421 2344455555555555555555544
Q ss_pred c
Q 043594 85 I 85 (86)
Q Consensus 85 f 85 (86)
|
T Consensus 126 ~ 126 (136)
T 2fo7_A 126 Y 126 (136)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.38 E-value=9.4e-07 Score=47.49 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=68.4
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~ 80 (86)
..+...|++++|.+++..+.+.. +.+...+..+...|...|++++|...|+++. ..+...|..+...|.+.|++++
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 87 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHH
Confidence 44567899999999999998865 3457788889999999999999999999874 2356788999999999999999
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|.+.|
T Consensus 88 A~~~~ 92 (136)
T 2fo7_A 88 AIEYY 92 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 12
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.33 E-value=3.4e-06 Score=52.81 Aligned_cols=80 Identities=4% Similarity=-0.162 Sum_probs=66.1
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchH-HHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANV-YVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
..+...++.++|.+.++.+.+.+..|+. ..+..+-..|.+.|++++|.+.+++ ..+...+..+...|.+.|+.++|.
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4566778899999999999988766654 4555555889999999999999998 457788999999999999999998
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 151 ~~l 153 (291)
T 3mkr_A 151 KEL 153 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=1.5e-06 Score=55.32 Aligned_cols=81 Identities=6% Similarity=-0.097 Sum_probs=58.6
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~ 80 (86)
..+.+.|++++|.+.+..+.+.. +.++.++..+...|.+.|++++|.+.|+++. .++..+|+.+...|.+.|++++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Confidence 34556777888888887777653 2245577777788888888888888887764 2366778888888888888888
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|.+.|
T Consensus 324 A~~~~ 328 (388)
T 1w3b_A 324 AVRLY 328 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87665
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.3e-06 Score=55.71 Aligned_cols=79 Identities=11% Similarity=-0.064 Sum_probs=71.1
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+..+.+.. ||+.++..+...|.+.|++++|...|++.. .| +..+|..+...|.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHH
Confidence 4567899999999999999987 899999999999999999999999999875 34 567899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 93 ~~~~ 96 (514)
T 2gw1_A 93 MFDL 96 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.22 E-value=3.7e-06 Score=54.14 Aligned_cols=81 Identities=7% Similarity=-0.111 Sum_probs=70.7
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~ 80 (86)
..+.+.|++++|.+++..+.+.. +.+..++..+...|.+.|++++|...|+++.+ | +..+|..+...|.+.|++++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 45678899999999999998763 44688999999999999999999999998753 4 57889999999999999999
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|.+.|
T Consensus 113 A~~~~ 117 (450)
T 2y4t_A 113 AEDDF 117 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.18 E-value=2.7e-06 Score=54.77 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=70.1
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+.+.|++++|.+.+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|+.+...|.+.|++++|.
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 667899999999999998864 44678899999999999999999999998753 46889999999999999999999
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 232 ~~~ 234 (450)
T 2y4t_A 232 SEV 234 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 17
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.16 E-value=7.5e-06 Score=47.06 Aligned_cols=80 Identities=5% Similarity=-0.163 Sum_probs=68.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.|....+.. +.++..|..+=..|.+.|++++|.+.|++.. .| +...|..+=..|.+.|+.++|
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 3557899999999999998874 3467788899999999999999999999874 35 577899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 124 ~~~~ 127 (151)
T 3gyz_A 124 KECF 127 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 18
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.15 E-value=8.8e-06 Score=45.04 Aligned_cols=80 Identities=10% Similarity=-0.075 Sum_probs=68.8
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+-+.|++++|.+.|...++.. +.++.+|..+-..|.+.|++++|.+.|++.. ..+...|..+-..|.+.|++++|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKA 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHH
Confidence 3567899999999999998864 3467788889999999999999999999764 24678899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 101 ~~~~ 104 (126)
T 4gco_A 101 QRAY 104 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.13 E-value=5.3e-06 Score=52.31 Aligned_cols=82 Identities=12% Similarity=0.020 Sum_probs=54.6
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCC-chHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~ 79 (86)
..+.+.|++++|.+++..+.+..-. +++.++..+-..|.+.|++++|.+.|++.. ..+..+|+.+...|.+.|+++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSE 264 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3455677777777777777776421 146677777777777777777777777653 235667777777777777777
Q ss_pred Hhhhcc
Q 043594 80 MCYTFI 85 (86)
Q Consensus 80 ~a~~~f 85 (86)
+|.+.|
T Consensus 265 ~A~~~~ 270 (365)
T 4eqf_A 265 EAVEAY 270 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777655
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.11 E-value=3.8e-06 Score=56.32 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=48.0
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
..|.+.|.+++|...|..+ ..|..+.+.+.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|..
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHH
Confidence 4566777777777777755 367777777888888888888777763 67888888888888888887754
Q ss_pred c
Q 043594 84 F 84 (86)
Q Consensus 84 ~ 84 (86)
.
T Consensus 199 ~ 199 (449)
T 1b89_A 199 C 199 (449)
T ss_dssp T
T ss_pred H
Confidence 3
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.08 E-value=6.7e-06 Score=49.19 Aligned_cols=77 Identities=9% Similarity=-0.054 Sum_probs=33.7
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC----C-ChhhHHHHHHHHhhcCChhHh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV----R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.|++++|.+.+....+.. ..+..++..+...|.+.|++++|.+.|++... | +...|..+...|.+.|++++|
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 34444455555444444432 12333444444444445555555544444322 2 223344444444444444444
Q ss_pred hhc
Q 043594 82 YTF 84 (86)
Q Consensus 82 ~~~ 84 (86)
.+.
T Consensus 161 ~~~ 163 (252)
T 2ho1_A 161 KEY 163 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 22
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.08 E-value=8.7e-06 Score=47.49 Aligned_cols=79 Identities=5% Similarity=-0.122 Sum_probs=40.4
Q ss_pred hcC-CchhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHh
Q 043594 7 GST-RNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 7 ~~~-~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a 81 (86)
... |++++|.+.+..+.+.+..| +...+..+...|.+.|++++|...|++..+ | +...|..+...|.+.|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 344 55555555555555422222 234555555555555555555555554431 2 344555555555555555555
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 167 ~~~~ 170 (225)
T 2vq2_A 167 DYYF 170 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 23
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.06 E-value=1.4e-05 Score=45.06 Aligned_cols=76 Identities=14% Similarity=-0.015 Sum_probs=34.5
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
..|++++|.+.+....+.. +.+..++..+...|...|++++|.+.|++.. ..+...|..+...|.+.|++++|.+.
T Consensus 54 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 54 KTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 4445555555555544432 2233444444445555555555555554432 12334444444444444544444443
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.06 E-value=9.3e-06 Score=48.50 Aligned_cols=80 Identities=8% Similarity=-0.064 Sum_probs=58.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|.+.+....+.. .++..+..+-..|...|++++|...|++.. .| +...|..+-..+.+.|+.++|
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 4557899999999999999888 778888999999999999999999999764 34 567888889999999999999
Q ss_pred hhccC
Q 043594 82 YTFIV 86 (86)
Q Consensus 82 ~~~f~ 86 (86)
.+.|+
T Consensus 205 ~~~~~ 209 (217)
T 2pl2_A 205 ARAAA 209 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 88764
No 25
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.06 E-value=1.4e-05 Score=48.08 Aligned_cols=79 Identities=10% Similarity=-0.126 Sum_probs=49.3
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+...|++++|.+.+....+.. +.+..++..+-..|...|++++|.+.|++..+ | +..+|..+-..|.+.|++++|.
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 53 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH
Confidence 445566666666666666653 22455666666666667777777766665532 3 4556666666677777777766
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 132 ~~~ 134 (275)
T 1xnf_A 132 DDL 134 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 26
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.06 E-value=1.2e-05 Score=45.35 Aligned_cols=80 Identities=10% Similarity=-0.048 Sum_probs=68.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|.+.+....+.. +.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|+.++|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 4556799999999999998874 44677888899999999999999999998642 3668899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 164 ~~~~ 167 (186)
T 3as5_A 164 LPHF 167 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.06 E-value=9.5e-06 Score=51.14 Aligned_cols=80 Identities=5% Similarity=-0.064 Sum_probs=69.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+++..+.+.. +.+..++..+-..|.+.|++++|.+.|++..+ | +..+|..+...|.+.|++++|
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHH
Confidence 4557799999999999998875 44678999999999999999999999998752 4 578999999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 153 ~~~~ 156 (365)
T 4eqf_A 153 CEAL 156 (365)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 28
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=2e-05 Score=41.15 Aligned_cols=80 Identities=8% Similarity=-0.157 Sum_probs=67.6
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC---ChhhHHHHHHHHhhc-CCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR---NVVSWTAIIAAFAQE-WEV 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~---~~~t~~~li~~~~~~-g~~ 78 (86)
.+.+.|++++|...+....+.. ..+...+..+-..|.+.|++++|.+.|++.. .| +...|..+-..|.+. |+.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKE 93 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCS
T ss_pred HHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCH
Confidence 4567899999999999998874 3456788888899999999999999999764 23 577899999999999 999
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|.+.|
T Consensus 94 ~~A~~~~ 100 (112)
T 2kck_A 94 VEAEIAE 100 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 29
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=2.4e-06 Score=46.33 Aligned_cols=78 Identities=10% Similarity=-0.115 Sum_probs=60.3
Q ss_pred cCCchhHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 8 STRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
..|++++|...+.+..+.+ -+.+...+..+-..|.+.|++++|...|++.. .| +..+|..+-..|.+.|+.++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4578899999999988764 23356688888899999999999999999875 24 5677888889999999999998
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 82 ~~~ 84 (117)
T 3k9i_A 82 ELL 84 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 30
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.03 E-value=2.1e-05 Score=43.87 Aligned_cols=80 Identities=5% Similarity=-0.235 Sum_probs=67.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|...+....+.. +.+...|..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|++++|
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 105 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 3557899999999999998864 3366788888899999999999999999764 24 567788888999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 106 ~~~~ 109 (142)
T 2xcb_A 106 ESGF 109 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=5.5e-06 Score=49.31 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=69.8
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC--------hhhHHHHHHHHhh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN--------VVSWTAIIAAFAQ 74 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~--------~~t~~~li~~~~~ 74 (86)
.+.+.|++++|.+.+....+.. .+...+..+-..|...|++++|.+.|++..+ |+ ..+|..+-..|.+
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK 91 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH
Confidence 4567899999999999999988 8889999999999999999999999998753 22 5788999999999
Q ss_pred cCChhHhhhcc
Q 043594 75 EWEVDMCYTFI 85 (86)
Q Consensus 75 ~g~~~~a~~~f 85 (86)
.|++++|.+.|
T Consensus 92 ~~~~~~A~~~~ 102 (258)
T 3uq3_A 92 LGDLKKTIEYY 102 (258)
T ss_dssp TTCHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 99999999876
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.03 E-value=1.9e-05 Score=47.19 Aligned_cols=78 Identities=13% Similarity=-0.026 Sum_probs=36.1
Q ss_pred hcCCchhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
...|++++|.+++..+.+.+..| +...+..+...|.+.|++++|.+.|++..+ | +..+|..+...|.+.|+.++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555555544422222 333444444555555555555555554321 2 3444445555555555555554
Q ss_pred hc
Q 043594 83 TF 84 (86)
Q Consensus 83 ~~ 84 (86)
+.
T Consensus 196 ~~ 197 (252)
T 2ho1_A 196 QY 197 (252)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.01 E-value=2.3e-05 Score=44.40 Aligned_cols=80 Identities=5% Similarity=-0.231 Sum_probs=67.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|...+....+.. +.++..|..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|+.++|
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A 108 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 3557899999999999998864 3367788888889999999999999999864 34 667888888999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 109 ~~~~ 112 (148)
T 2vgx_A 109 ESGL 112 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.99 E-value=2.5e-05 Score=45.51 Aligned_cols=77 Identities=6% Similarity=-0.053 Sum_probs=34.7
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc-CChHHHHHhhcCCCC----C-ChhhHHHHHHHHhhcCChhH
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC-GENIDVYKMFEKMPV----R-NVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~~----~-~~~t~~~li~~~~~~g~~~~ 80 (86)
...|++++|.+.+....+.. +.+..++..+...|... |++++|...|++..+ | +...|..+...|.+.|++++
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 53 QYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 34444555555555444432 12333444444455555 555555555444322 1 12344444445555555555
Q ss_pred hhhc
Q 043594 81 CYTF 84 (86)
Q Consensus 81 a~~~ 84 (86)
|.+.
T Consensus 132 A~~~ 135 (225)
T 2vq2_A 132 AEAY 135 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.99 E-value=1e-05 Score=50.61 Aligned_cols=79 Identities=8% Similarity=0.033 Sum_probs=42.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHH---HHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYV---GSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~ 78 (86)
.+.+.|+.++|.+.+..+.+.. |+... ..+.+..+...|++++|..+|+++.+ .+...|+.+-..|.+.|++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 3445566666666666665553 43321 12233333344666666666665531 2455566666666666666
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|.+.|
T Consensus 217 ~eA~~~l 223 (291)
T 3mkr_A 217 EAAEGVL 223 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 36
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.9e-05 Score=42.13 Aligned_cols=80 Identities=8% Similarity=-0.130 Sum_probs=68.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+....+.. +.+...+..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|+.++|
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 91 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 91 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 3557899999999999998864 3467789999999999999999999999764 24 577888899999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 92 ~~~~ 95 (126)
T 3upv_A 92 LETL 95 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 37
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.97 E-value=1.1e-05 Score=43.15 Aligned_cols=80 Identities=13% Similarity=0.048 Sum_probs=67.4
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-C-------hhhHHHHHHHHhh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-N-------VVSWTAIIAAFAQ 74 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~-------~~t~~~li~~~~~ 74 (86)
.+...|++++|...+....+.. +.+...+..+-..|...|++++|...|++... | + ..+|..+-..|.+
T Consensus 13 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 91 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998875 34677888899999999999999999997642 2 2 6678888899999
Q ss_pred cCChhHhhhcc
Q 043594 75 EWEVDMCYTFI 85 (86)
Q Consensus 75 ~g~~~~a~~~f 85 (86)
.|++++|.+.|
T Consensus 92 ~~~~~~A~~~~ 102 (131)
T 1elr_A 92 EEKYKDAIHFY 102 (131)
T ss_dssp TTCHHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 99999998876
No 38
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.96 E-value=3.5e-05 Score=40.47 Aligned_cols=80 Identities=16% Similarity=-0.026 Sum_probs=67.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|.+.+....+.. +.+...+..+-..|.+.|++++|...+++.. .| +...|..+-..|.+.|+.++|
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 91 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 91 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHH
Confidence 4557899999999999998864 3367788888899999999999999998764 24 577888899999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 92 ~~~~ 95 (118)
T 1elw_A 92 KRTY 95 (118)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 39
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.96 E-value=3.1e-05 Score=47.53 Aligned_cols=77 Identities=8% Similarity=0.003 Sum_probs=33.7
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
.+.|++++|.+.+....+.. +.+..++..+...|.+.|++++|.+.|++..+ | +..+|..+...|.+.|++++|.+
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 34444455555444444432 12233444444444444555555444444321 1 23344444444444444444443
Q ss_pred c
Q 043594 84 F 84 (86)
Q Consensus 84 ~ 84 (86)
.
T Consensus 262 ~ 262 (327)
T 3cv0_A 262 Q 262 (327)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.96 E-value=2.7e-05 Score=47.81 Aligned_cols=79 Identities=9% Similarity=0.023 Sum_probs=68.8
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+...|++++|.+++..+.+.. +.+..++..+...|.+.|++++|.+.|++.. .| +..+|..+...|.+.|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 567889999999999998875 3467899999999999999999999999864 23 5788999999999999999999
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 227 ~~~ 229 (327)
T 3cv0_A 227 DAY 229 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 41
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.95 E-value=2.1e-05 Score=42.38 Aligned_cols=80 Identities=13% Similarity=-0.015 Sum_probs=66.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+....+.. ..+..++..+-..|...|++++|...|++..+ | +...|..+-..|.+.|++++|
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A 103 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 103 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHH
Confidence 4567899999999999988753 23677888888999999999999999987642 3 567888888999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 104 ~~~~ 107 (133)
T 2lni_A 104 MDVY 107 (133)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 42
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.95 E-value=3.5e-05 Score=43.77 Aligned_cols=80 Identities=10% Similarity=-0.044 Sum_probs=68.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+....+.. ..+...+..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|++++|
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 98 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGA 98 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Confidence 4567899999999999998875 3367788999999999999999999999764 24 578899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 99 ~~~~ 102 (164)
T 3sz7_A 99 KEAY 102 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.95 E-value=2.2e-05 Score=46.39 Aligned_cols=9 Identities=0% Similarity=-0.289 Sum_probs=3.2
Q ss_pred cCChHHHHH
Q 043594 44 CGENIDVYK 52 (86)
Q Consensus 44 ~g~~~~A~~ 52 (86)
.|++++|.+
T Consensus 104 ~~~~~~A~~ 112 (243)
T 2q7f_A 104 KEMYKEAKD 112 (243)
T ss_dssp TTCHHHHHH
T ss_pred hccHHHHHH
Confidence 333333333
No 44
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.95 E-value=2.4e-05 Score=49.06 Aligned_cols=79 Identities=4% Similarity=-0.090 Sum_probs=40.5
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+.+.|++++|.+.+....+.. +.+..++..+...|.+.|++++|...|++.. .| +..+|..+-..|.+.|++++|.
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 305 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 305 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 334555555555555555442 2234455555555555555555555555442 12 3445555555555555555555
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 306 ~~~ 308 (368)
T 1fch_A 306 EHF 308 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.94 E-value=3.3e-05 Score=45.64 Aligned_cols=80 Identities=11% Similarity=-0.034 Sum_probs=61.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|.+.+..+.+.. +.+..++..+...|.+.|++++|...+++.. ..+...|..+...|.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 4556788888888888887764 3456677788888888888888888888764 23567788888888888888888
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 179 ~~~~ 182 (243)
T 2q7f_A 179 LSQF 182 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 46
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.93 E-value=4.7e-05 Score=40.59 Aligned_cols=80 Identities=10% Similarity=-0.011 Sum_probs=66.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|.+.+....+.. ..+...+..+-..|...|++++|.+.+++.. .| +...|..+-..|.+.|++++|
T Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 99 (131)
T 2vyi_A 21 EQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEA 99 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHH
Confidence 4557899999999999998764 3467788888899999999999999998764 24 567888888999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 100 ~~~~ 103 (131)
T 2vyi_A 100 VAYY 103 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 47
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.91 E-value=2.9e-05 Score=48.66 Aligned_cols=80 Identities=9% Similarity=-0.003 Sum_probs=69.1
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+..+.+.. +.+..++..+-..|.+.|++++|.+.|++.. ..+..+|..+...|.+.|+.++|
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4567899999999999998864 4467789999999999999999999999764 24678899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 152 ~~~~ 155 (368)
T 1fch_A 152 CEIL 155 (368)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 48
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.91 E-value=5.1e-05 Score=41.37 Aligned_cols=80 Identities=6% Similarity=-0.175 Sum_probs=68.0
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|...+....+.. +.+...+..+-..|...|++++|...|++.. .| +...|..+-..|.+.|++++|
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 96 (137)
T 3q49_B 18 RLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA 96 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHH
Confidence 4567899999999999998875 3357788899999999999999999999764 24 577899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 97 ~~~~ 100 (137)
T 3q49_B 97 IANL 100 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.89 E-value=4.6e-05 Score=45.24 Aligned_cols=80 Identities=8% Similarity=-0.130 Sum_probs=63.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|.+.+....+.. +.+..++..+-..|.+.|++++|...|++.. .| +..+|..+-..|.+.|+.++|
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4556788999999998888764 3356788888888999999999999888764 23 567788888889999999988
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 227 ~~~~ 230 (258)
T 3uq3_A 227 LETL 230 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 50
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.80 E-value=6.3e-05 Score=40.56 Aligned_cols=80 Identities=6% Similarity=-0.221 Sum_probs=63.4
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchH---HHHHHHHHHHHhcCChHHHHHhhcCCC--CCC----hhhHHHHHHHHhhc
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANV---YVGSSLISFCGKCGENIDVYKMFEKMP--VRN----VVSWTAIIAAFAQE 75 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~----~~t~~~li~~~~~~ 75 (86)
.+.+.|++++|...+....+..= .+. ..+..+-..|.+.|++++|...|++.. .|+ ..++..+-..|.+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 34578999999999999988641 122 467777788999999999999999864 243 45577788889999
Q ss_pred CChhHhhhcc
Q 043594 76 WEVDMCYTFI 85 (86)
Q Consensus 76 g~~~~a~~~f 85 (86)
|+.++|.+.|
T Consensus 90 g~~~~A~~~~ 99 (129)
T 2xev_A 90 GKNTEAQQTL 99 (129)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999876
No 51
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=7.3e-05 Score=40.96 Aligned_cols=79 Identities=10% Similarity=-0.115 Sum_probs=66.4
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch----HHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN----VYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~ 77 (86)
.+.+.|++++|.+.+....+. .|+ ...+..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|+
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 114 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCC
Confidence 456789999999999998875 355 6788888899999999999999998764 24 66788888899999999
Q ss_pred hhHhhhcc
Q 043594 78 VDMCYTFI 85 (86)
Q Consensus 78 ~~~a~~~f 85 (86)
.++|.+.|
T Consensus 115 ~~~A~~~~ 122 (148)
T 2dba_A 115 LDQAVLDL 122 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 52
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.78 E-value=5.2e-05 Score=46.54 Aligned_cols=79 Identities=11% Similarity=-0.014 Sum_probs=46.6
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC------------CCChhhHHHHHHHHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP------------VRNVVSWTAIIAAFA 73 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~------------~~~~~t~~~li~~~~ 73 (86)
+...|++++|.+.+....+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+-..|.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 445566666666666665543 2345566666666666666666666665442 112346666666666
Q ss_pred hcCChhHhhhcc
Q 043594 74 QEWEVDMCYTFI 85 (86)
Q Consensus 74 ~~g~~~~a~~~f 85 (86)
+.|++++|.+.|
T Consensus 248 ~~g~~~~A~~~~ 259 (330)
T 3hym_B 248 KLKKYAEALDYH 259 (330)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhcCHHHHHHHH
Confidence 666666666554
No 53
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.78 E-value=4.4e-05 Score=46.89 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=66.5
Q ss_pred cchhcCCchhHHHHHHHHHHHHc--------CCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSG--------FVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAF 72 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g--------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~ 72 (86)
..+.+.|++++|.+.+....+.. ...+..++..+-..|.+.|++++|...|++.. ..+..+|..+-..|
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 280 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH 280 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 34567899999999999987753 13345688899999999999999999999764 23677889999999
Q ss_pred hhcCChhHhhhcc
Q 043594 73 AQEWEVDMCYTFI 85 (86)
Q Consensus 73 ~~~g~~~~a~~~f 85 (86)
.+.|+.++|.+.|
T Consensus 281 ~~~g~~~~A~~~~ 293 (330)
T 3hym_B 281 SLMGNFENAVDYF 293 (330)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 9999999998876
No 54
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.76 E-value=4.4e-05 Score=44.62 Aligned_cols=77 Identities=8% Similarity=-0.002 Sum_probs=66.0
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a 81 (86)
.+...|++++|.+.+... +.|+...+..+-..|.+.|++++|.+.|++.. ..+...|..+-..|.+.|+.++|
T Consensus 15 ~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHH
Confidence 345679999999988876 47788999999999999999999999999764 23667899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 91 ~~~~ 94 (213)
T 1hh8_A 91 IKDL 94 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 55
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.74 E-value=5.2e-05 Score=41.50 Aligned_cols=80 Identities=8% Similarity=-0.070 Sum_probs=67.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|...+...++.. +.+...|..+=..|.+.|++++|...|++.. .| +...|..+-..|.+.|+.++|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4557899999999999998864 2366778888889999999999999999765 34 567888999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 105 ~~~~ 108 (121)
T 1hxi_A 105 LASL 108 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 56
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.74 E-value=0.00013 Score=40.70 Aligned_cols=79 Identities=4% Similarity=-0.156 Sum_probs=55.4
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+...|++++|...+....+.. +.+..++..+-..|...|++++|...|++.. .| +..+|..+-..|.+.|+.++|.
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 101 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 101 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHH
Confidence 445677888888887777653 2346677777777778888888888777653 23 4566777777778888888877
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 102 ~~~ 104 (166)
T 1a17_A 102 RDY 104 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.73 E-value=5.7e-05 Score=45.39 Aligned_cols=80 Identities=9% Similarity=-0.140 Sum_probs=67.6
Q ss_pred hhcCCchhHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGF---VANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVD 79 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~ 79 (86)
....|++++|.+.+..+.+..- ..+..++..+-..|...|++++|...|++.. .| +..+|..+-..|.+.|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 4466889999999999988642 1256788899999999999999999999875 24 6789999999999999999
Q ss_pred Hhhhcc
Q 043594 80 MCYTFI 85 (86)
Q Consensus 80 ~a~~~f 85 (86)
+|.+.|
T Consensus 95 ~A~~~~ 100 (275)
T 1xnf_A 95 AAYEAF 100 (275)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 58
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.73 E-value=8.6e-05 Score=41.98 Aligned_cols=79 Identities=6% Similarity=-0.063 Sum_probs=63.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+...++.. +-++..|..+-..|.+.|++++|...|++.. .| +..+|..+-..|.+.|+.++|
T Consensus 40 ~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence 4567899999999999988864 3356788888899999999999999998765 35 567888888889999988776
Q ss_pred hhc
Q 043594 82 YTF 84 (86)
Q Consensus 82 ~~~ 84 (86)
.+.
T Consensus 119 a~~ 121 (150)
T 4ga2_A 119 AKY 121 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.72 E-value=0.00014 Score=41.59 Aligned_cols=79 Identities=11% Similarity=-0.008 Sum_probs=61.4
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+...++.+.+.+.+....+.. +.+...+..+-..|.+.|++++|.+.|++.. .| +..+|..+-..|.+.|+.++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 345677888888888777653 3356677788888889999999999998764 24 5678888889999999999998
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 162 ~~~ 164 (184)
T 3vtx_A 162 KYF 164 (184)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.70 E-value=0.00011 Score=43.50 Aligned_cols=80 Identities=5% Similarity=-0.102 Sum_probs=67.6
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+.+.|++++|.+.+....+..-.++...+..+-..|.+.|++++|.+.|++.. .| +..+|..+-..|.+.|+.++|.
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 96 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYI 96 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHH
Confidence 45689999999999999987744667777778899999999999999999764 34 5678888999999999999999
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 97 ~~~ 99 (228)
T 4i17_A 97 ATL 99 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 61
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.67 E-value=7.6e-05 Score=41.13 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=63.4
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC--------hhhHHHHHHHHhh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN--------VVSWTAIIAAFAQ 74 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~--------~~t~~~li~~~~~ 74 (86)
.+-+.|++++|.+.|...++.. +-+...|+.+=..|.+.|++++|.+.|++..+ |+ ..+|..+=..|..
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH
Confidence 4567899999999999998864 33567888899999999999999999987642 21 1256666677888
Q ss_pred cCChhHhhhcc
Q 043594 75 EWEVDMCYTFI 85 (86)
Q Consensus 75 ~g~~~~a~~~f 85 (86)
.|++++|++.|
T Consensus 96 ~~~~~~A~~~~ 106 (127)
T 4gcn_A 96 QNDLSLAVQWF 106 (127)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99999998876
No 62
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.65 E-value=8.2e-05 Score=44.78 Aligned_cols=79 Identities=5% Similarity=-0.114 Sum_probs=36.1
Q ss_pred hcCCchhHHHHHHHHHHHHcCCch--HHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVAN--VYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a 81 (86)
...|++++|.+.+....+..-.|+ ...+..+-..|.+.|++++|.+.|++..+ | +..+|..+-..|.+.|++++|
T Consensus 48 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 48 YELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence 344555555555555544221111 11244444555555555555555554321 2 334455555555555555555
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 128 ~~~~ 131 (272)
T 3u4t_A 128 IQYM 131 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.65 E-value=6.7e-05 Score=44.95 Aligned_cols=82 Identities=9% Similarity=0.043 Sum_probs=66.6
Q ss_pred cchhcCCchhHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC----------C-ChhhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSG-------FVANVYVGSSLISFCGKCGENIDVYKMFEKMPV----------R-NVVSW 65 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g-------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~t~ 65 (86)
..+...|++++|.+.+....+.. -.....++..+-..|...|++++|...|++... | ...+|
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 35667899999999999987762 133466888899999999999999999987631 2 35678
Q ss_pred HHHHHHHhhcCChhHhhhcc
Q 043594 66 TAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 66 ~~li~~~~~~g~~~~a~~~f 85 (86)
..+-..|.+.|++++|.+.|
T Consensus 173 ~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 88999999999999999876
No 64
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.64 E-value=0.00014 Score=44.90 Aligned_cols=81 Identities=9% Similarity=-0.009 Sum_probs=69.4
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~ 80 (86)
..+...|++++|.+++..+.+.. +.++.++..+-..|.+.|++++|...|++..+ .+..+|..+...|.+.|++++
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34567899999999999998864 34677889999999999999999999997643 367889999999999999999
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|.+.|
T Consensus 207 A~~~~ 211 (359)
T 3ieg_A 207 SLSEV 211 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.63 E-value=6.7e-05 Score=45.70 Aligned_cols=82 Identities=11% Similarity=0.040 Sum_probs=66.2
Q ss_pred cchhcCCchhHHHHHHHHHHHH------cCCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----------------
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRS------GFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV----------------- 59 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------------- 59 (86)
..+...|++++|.+++....+. +-.| ...++..+-..|.+.|++++|.+.|++..+
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 3466789999999999999876 3233 455788899999999999999999876531
Q ss_pred ----------------------------------C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 60 ----------------------------------R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 60 ----------------------------------~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
| +..+|..+-..|.+.|+.++|.+.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 3457888999999999999999876
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.61 E-value=6.8e-05 Score=45.66 Aligned_cols=82 Identities=5% Similarity=-0.043 Sum_probs=67.4
Q ss_pred cchhcCCchhHHHHHHHHHHHH-------cCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC----------C-ChhhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRS-------GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV----------R-NVVSW 65 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~t~ 65 (86)
..+...|++++|..++..+.+. .......++..+-..|...|++++|...|++... | ...+|
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3456789999999999999875 3444567888999999999999999999987631 2 35678
Q ss_pred HHHHHHHhhcCChhHhhhcc
Q 043594 66 TAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 66 ~~li~~~~~~g~~~~a~~~f 85 (86)
..+-..|...|++++|.+.|
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~ 134 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLC 134 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHH
Confidence 88999999999999999876
No 67
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.60 E-value=0.0003 Score=43.63 Aligned_cols=80 Identities=6% Similarity=-0.171 Sum_probs=68.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|...+....+.. ..+...+..+-..|.+.|++++|...+++..+ | +...|..+-..|.+.|++++|
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 13 RLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4557899999999999998864 23677888999999999999999999997653 4 567888899999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 92 ~~~~ 95 (281)
T 2c2l_A 92 IANL 95 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 68
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.59 E-value=0.00017 Score=44.55 Aligned_cols=80 Identities=8% Similarity=-0.113 Sum_probs=68.8
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|...+..+.+.. +.++.++..+-..|...|++++|...|++.. .| +...|..+-..|.+.|+.++|
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHH
Confidence 4567899999999999998864 3457788899999999999999999999875 34 667899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 91 ~~~~ 94 (359)
T 3ieg_A 91 EDDF 94 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.57 E-value=0.00021 Score=41.67 Aligned_cols=80 Identities=9% Similarity=-0.086 Sum_probs=66.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-Ch----------------hhH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NV----------------VSW 65 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~----------------~t~ 65 (86)
.+.+.|++++|.+.+....+.. +.+...+..+-..|.+.|++++|.+.|++..+ | +. ..|
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 46 MYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHH
Confidence 4567899999999999998875 34667888999999999999999999987642 2 22 678
Q ss_pred HHHHHHHhhcCChhHhhhcc
Q 043594 66 TAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 66 ~~li~~~~~~g~~~~a~~~f 85 (86)
..+-..|.+.|+.++|.+.|
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHH
Confidence 88889999999999998876
No 70
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.57 E-value=0.00012 Score=47.93 Aligned_cols=80 Identities=10% Similarity=-0.040 Sum_probs=68.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+..+.+.. +.++..+..+-..|.+.|++++|.+.|++.. .| +..+|..+...|.+.|++++|
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 112 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHH
Confidence 4567899999999999999875 4467899999999999999999999999875 24 678899999999999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 113 ~~~~ 116 (537)
T 3fp2_A 113 MFDL 116 (537)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.56 E-value=0.00011 Score=45.90 Aligned_cols=73 Identities=4% Similarity=-0.030 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC-hh-hHHHHHHHHhhcCChhHhhhcc
Q 043594 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN-VV-SWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~-t~~~li~~~~~~g~~~~a~~~f 85 (86)
++|..++.+.++.--+-+...|..+...+.+.|++++|.++|++..+ |+ .. .|..+...+.+.|++++|.++|
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77888887777632222455788888888888888888888886542 43 33 6888888888888888887765
No 72
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.55 E-value=0.00019 Score=42.49 Aligned_cols=78 Identities=9% Similarity=-0.048 Sum_probs=60.6
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCch-HHHHHH----------------HHHHHHhcCChHHHHHhhcCCC--CC-ChhhH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVAN-VYVGSS----------------LISFCGKCGENIDVYKMFEKMP--VR-NVVSW 65 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~----------------li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~ 65 (86)
+.+.|++++|.+.+....+.. |+ +..+.. +-..|.+.|++++|...|++.. .| +...|
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 91 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCL 91 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 446788999999999887753 43 334444 7778888999999999998764 34 66788
Q ss_pred HHHHHHHhhcCChhHhhhcc
Q 043594 66 TAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 66 ~~li~~~~~~g~~~~a~~~f 85 (86)
..+-..|.+.|+.++|.+.|
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~ 111 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMY 111 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 88888899999999998776
No 73
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.53 E-value=0.00019 Score=47.74 Aligned_cols=78 Identities=10% Similarity=-0.025 Sum_probs=63.2
Q ss_pred cCCchhHHHHHHHHHHHH---cCC---ch-HHHHHHHHHHHHhcCChHHHHHhhcCCC----------CCCh-hhHHHHH
Q 043594 8 STRNIRGGTQYQCLAVRS---GFV---AN-VYVGSSLISFCGKCGENIDVYKMFEKMP----------VRNV-VSWTAII 69 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~---g~~---~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~----------~~~~-~t~~~li 69 (86)
+.|++++|..++.+..+. -+. |+ ..+++.|-..|...|++++|..++++.. +|++ .+++.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999888664 122 33 4589999999999999999999999763 3554 6799999
Q ss_pred HHHhhcCChhHhhhcc
Q 043594 70 AAFAQEWEVDMCYTFI 85 (86)
Q Consensus 70 ~~~~~~g~~~~a~~~f 85 (86)
..|...|+.++|..+|
T Consensus 390 ~~~~~qg~~~eA~~~~ 405 (433)
T 3qww_A 390 RLYMGLENKAAGEKAL 405 (433)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhccCHHHHHHHH
Confidence 9999999999999876
No 74
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00022 Score=37.32 Aligned_cols=80 Identities=13% Similarity=-0.116 Sum_probs=61.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC-------hhhHHHHHHHHhhc
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN-------VVSWTAIIAAFAQE 75 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~-------~~t~~~li~~~~~~ 75 (86)
.+.+.|++++|.+.+....+.. +.+...+..+-..|.+.|++++|.+.|++.. .|+ ...+..+-..+...
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 91 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAV 91 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998864 3367788888899999999999999999764 244 44556666677777
Q ss_pred CChhHhhhcc
Q 043594 76 WEVDMCYTFI 85 (86)
Q Consensus 76 g~~~~a~~~f 85 (86)
|+.++|.+.|
T Consensus 92 ~~~~~a~~~~ 101 (111)
T 2l6j_A 92 GSVQIPVVEV 101 (111)
T ss_dssp HCCCCCSSSS
T ss_pred HhHhhhHhHH
Confidence 7777776654
No 75
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.52 E-value=0.0004 Score=39.66 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=35.0
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
+.+.|++++|.+.+....+.. +-++..+..+-..|.+.|++++|...++..
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445677788888877777653 224556777777777777777777776654
No 76
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.51 E-value=0.00032 Score=45.98 Aligned_cols=76 Identities=11% Similarity=-0.041 Sum_probs=33.7
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
+.|++++|.+.+....+.. +.+..++..+-..|...|++++|.+.|++.. .| +..+|..+-..|.+.|++++|.+.
T Consensus 288 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444455555444444432 1223344444444445555555555444432 12 233444444444444444444443
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.51 E-value=0.00017 Score=43.31 Aligned_cols=80 Identities=5% Similarity=-0.151 Sum_probs=64.6
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CCh----hhHHHHHHHHhhcCCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RNV----VSWTAIIAAFAQEWEV 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~----~t~~~li~~~~~~g~~ 78 (86)
.+...|++++|.+.+....+.. +.+...+..+-..|.+.|++++|.+.|++..+ ++. .+|..+-..|.+.|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 4567899999999999998764 22444788888899999999999999987643 222 2488889999999999
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|.+.|
T Consensus 91 ~~A~~~~ 97 (272)
T 3u4t_A 91 SLAIQQY 97 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 78
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00012 Score=47.61 Aligned_cols=78 Identities=10% Similarity=-0.091 Sum_probs=45.2
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+...|++++|.+++..+.+.. |+..++..+...|...|++++|...|++... .+..+|..+...|.+.|++++|.
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 445566666666666666554 2255566666666666666666666665421 24455556666666666666665
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
+.|
T Consensus 325 ~~~ 327 (514)
T 2gw1_A 325 KDF 327 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 79
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.49 E-value=0.00023 Score=48.06 Aligned_cols=80 Identities=6% Similarity=-0.114 Sum_probs=64.9
Q ss_pred hhcCCchhHHHHHHHHHHHHc---C---Cc-hHHHHHHHHHHHHhcCChHHHHHhhcCCC----------CCCh-hhHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSG---F---VA-NVYVGSSLISFCGKCGENIDVYKMFEKMP----------VRNV-VSWTA 67 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g---~---~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~----------~~~~-~t~~~ 67 (86)
+...|++++|..++.+..+.. + .| ...+++.|-..|...|++++|..++++.. +|++ .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446799999999998886642 2 23 34589999999999999999999998752 3544 67899
Q ss_pred HHHHHhhcCChhHhhhcc
Q 043594 68 IIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 68 li~~~~~~g~~~~a~~~f 85 (86)
|-..|...|++++|..+|
T Consensus 399 La~~~~~~G~~~eA~~~~ 416 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMI 416 (490)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 999999999999999876
No 80
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.47 E-value=0.0002 Score=42.67 Aligned_cols=76 Identities=8% Similarity=-0.197 Sum_probs=34.7
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc-----------CChHHHHHhhcCCC--CC-ChhhHHHHHHHHh
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC-----------GENIDVYKMFEKMP--VR-NVVSWTAIIAAFA 73 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~ 73 (86)
+.|++++|.+.+....+.. +.+...+..+-..|.+. |++++|...|++.. .| +...|..+=..|.
T Consensus 51 ~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~ 129 (217)
T 2pl2_A 51 KLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA 129 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455555555555544432 11233444444444444 55555555554432 12 2344444444455
Q ss_pred hcCChhHhhhc
Q 043594 74 QEWEVDMCYTF 84 (86)
Q Consensus 74 ~~g~~~~a~~~ 84 (86)
+.|++++|++.
T Consensus 130 ~~g~~~~A~~~ 140 (217)
T 2pl2_A 130 LLGERDKAEAS 140 (217)
T ss_dssp HTTCHHHHHHH
T ss_pred HcCChHHHHHH
Confidence 55555555443
No 81
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.46 E-value=0.00032 Score=39.59 Aligned_cols=81 Identities=9% Similarity=-0.038 Sum_probs=66.0
Q ss_pred chhcCCchhHHHHHHHHHHHHc-----------------CCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-Chhh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSG-----------------FVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVS 64 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g-----------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t 64 (86)
.+.+.|++++|...|...++.- -+.+..++..+-.+|.+.|++++|...+++.. .| +...
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a 99 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKA 99 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHH
Confidence 3557899999999999987751 12244688888899999999999999998764 24 6778
Q ss_pred HHHHHHHHhhcCChhHhhhcc
Q 043594 65 WTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 65 ~~~li~~~~~~g~~~~a~~~f 85 (86)
|..+-.+|...|++++|.+.|
T Consensus 100 ~~~~g~~~~~~g~~~~A~~~~ 120 (162)
T 3rkv_A 100 LFRRAKARIAAWKLDEAEEDL 120 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHH
Confidence 899999999999999998765
No 82
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.45 E-value=0.00041 Score=39.53 Aligned_cols=80 Identities=6% Similarity=-0.051 Sum_probs=57.4
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHH-HHhcCCh--HHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISF-CGKCGEN--IDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-y~~~g~~--~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~ 78 (86)
.+...|++++|.+.+....+.. ..+...+..+-.. |...|++ ++|...|++.. .| +...|..+-..|.+.|+.
T Consensus 53 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 131 (177)
T 2e2e_A 53 YYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY 131 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccH
Confidence 3456788888888888887754 2245566666666 6678887 88888888764 24 456777777888888888
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|.+.|
T Consensus 132 ~~A~~~~ 138 (177)
T 2e2e_A 132 AQAIELW 138 (177)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.42 E-value=0.00014 Score=43.49 Aligned_cols=82 Identities=6% Similarity=-0.032 Sum_probs=66.7
Q ss_pred cchhcCCchhHHHHHHHHHHHH------cCCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC----------C-ChhhH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRS------GFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV----------R-NVVSW 65 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~t~ 65 (86)
..+...|++++|.+.+....+. +-.| ...++..+-..|...|++++|.+.|++... | ...+|
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3456789999999999998776 3233 466889999999999999999999987631 2 35678
Q ss_pred HHHHHHHhhcCChhHhhhcc
Q 043594 66 TAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 66 ~~li~~~~~~g~~~~a~~~f 85 (86)
..+-..|.+.|++++|.+.|
T Consensus 131 ~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 131 NNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 88999999999999999876
No 84
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.38 E-value=0.00044 Score=44.00 Aligned_cols=81 Identities=7% Similarity=-0.200 Sum_probs=64.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch--------------HHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN--------------VYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTA 67 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~ 67 (86)
.+.+.|++++|.+.+....+..-... ..++..+-..|.+.|++++|...|++.. .| +...|..
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 235 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 235 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34567889999999998887652221 4788888899999999999999998764 23 6778888
Q ss_pred HHHHHhhcCChhHhhhcc
Q 043594 68 IIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 68 li~~~~~~g~~~~a~~~f 85 (86)
+-.+|.+.|++++|.+.|
T Consensus 236 lg~~~~~~g~~~~A~~~~ 253 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADF 253 (336)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 889999999999998766
No 85
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.37 E-value=0.00061 Score=39.64 Aligned_cols=81 Identities=10% Similarity=-0.101 Sum_probs=64.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcC-Cc--------------hHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGF-VA--------------NVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWT 66 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~-~~--------------~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~ 66 (86)
.+.+.|++++|.+.+....+..- .| ...++..+-..|.+.|++++|...+++.. ..+...|.
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 126 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALY 126 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34567999999999999887431 12 12678888888999999999999998764 23667888
Q ss_pred HHHHHHhhcCChhHhhhcc
Q 043594 67 AIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 67 ~li~~~~~~g~~~~a~~~f 85 (86)
.+-..|.+.|++++|.+.|
T Consensus 127 ~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 127 KLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp HHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHH
Confidence 8889999999999998876
No 86
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.34 E-value=0.0013 Score=43.89 Aligned_cols=80 Identities=4% Similarity=-0.152 Sum_probs=64.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+.+..+.. ..+..++..+-..|.+.|++++|.+.|++.. .| +..+|..+-..|.+.|+.++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4557789999999999888863 2347788888899999999999999988754 23 567888888889999999999
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
.+.|
T Consensus 94 ~~~~ 97 (477)
T 1wao_1 94 LRDY 97 (477)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.33 E-value=0.00051 Score=44.06 Aligned_cols=81 Identities=5% Similarity=0.001 Sum_probs=57.9
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCc-----hHHHHHHHHHHHH--hcC--ChHHHHHhhcCCCC--CChhhHHHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVA-----NVYVGSSLISFCG--KCG--ENIDVYKMFEKMPV--RNVVSWTAIIAA 71 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~y~--~~g--~~~~A~~~~~~m~~--~~~~t~~~li~~ 71 (86)
+..+.+.|+.+.|.++++.|.+. .| +..+..-|..++. ..| +.++|..+|+++.+ |+..+-..++.+
T Consensus 143 vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~ 220 (310)
T 3mv2_B 143 IEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNL 220 (310)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 34566788999999999999775 46 3555566665533 234 89999999998864 443344556668
Q ss_pred HhhcCChhHhhhcc
Q 043594 72 FAQEWEVDMCYTFI 85 (86)
Q Consensus 72 ~~~~g~~~~a~~~f 85 (86)
+.+.|++++|.+.+
T Consensus 221 ~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 221 HLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 89999999998765
No 88
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.32 E-value=0.00033 Score=46.52 Aligned_cols=80 Identities=16% Similarity=0.003 Sum_probs=66.9
Q ss_pred chhcCCch-hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhc------
Q 043594 5 SCGSTRNI-RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQE------ 75 (86)
Q Consensus 5 ~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~------ 75 (86)
.+...|++ ++|.+.+....+.. +.+...|..+-..|.+.|++++|.+.|++.. .|+..+|..+-..|.+.
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~ 189 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGD 189 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHH
T ss_pred HHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChh
Confidence 45577899 99999999998864 2346788999999999999999999999764 47778888888999998
Q ss_pred ---CChhHhhhcc
Q 043594 76 ---WEVDMCYTFI 85 (86)
Q Consensus 76 ---g~~~~a~~~f 85 (86)
|++++|.+.|
T Consensus 190 ~~~g~~~~A~~~~ 202 (474)
T 4abn_A 190 EHSRHVMDSVRQA 202 (474)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHH
Confidence 9999998776
No 89
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.31 E-value=0.00043 Score=43.13 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=59.1
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----C--ChhhHHHHHHHHhhcCChhHh
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-----R--NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~--~~~t~~~li~~~~~~g~~~~a 81 (86)
.|+.++|.++|....+.. .-++..|..++..+.+.|++++|..+|++... | ....|..++..+.+.|+.++|
T Consensus 182 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 588888888888887753 23567888888888889999999998886532 2 345788888888888998888
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
..++
T Consensus 261 ~~~~ 264 (308)
T 2ond_A 261 LKVE 264 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 90
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.28 E-value=0.00029 Score=46.76 Aligned_cols=81 Identities=6% Similarity=-0.129 Sum_probs=64.9
Q ss_pred chhcCCchhHHHHHHHHHHHHc---CCc----hHHHHHHHHHHHHhcCChHHHHHhhcCCC----------CCCh-hhHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSG---FVA----NVYVGSSLISFCGKCGENIDVYKMFEKMP----------VRNV-VSWT 66 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~----------~~~~-~t~~ 66 (86)
.+.+.|++++|..++.+..+.. +.| ...+++.|...|...|++++|..++++.. .|++ .+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 4556788999999999887541 222 24588999999999999999999999763 3443 6789
Q ss_pred HHHHHHhhcCChhHhhhcc
Q 043594 67 AIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 67 ~li~~~~~~g~~~~a~~~f 85 (86)
.|-..|...|+.++|..++
T Consensus 376 nLa~~~~~~g~~~eA~~~~ 394 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNL 394 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999875
No 91
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.27 E-value=0.00055 Score=48.16 Aligned_cols=76 Identities=11% Similarity=0.019 Sum_probs=34.3
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
+.|++++|.+.|.+.++.. .-+...++.+=..|.+.|++++|.+.|++.. .| +..+|+.+=..|.+.|+.++|++.
T Consensus 21 ~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~ 99 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQC 99 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555555544432 1123344444455555555555555554432 12 233444444444444444444443
No 92
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.27 E-value=0.00055 Score=48.19 Aligned_cols=80 Identities=4% Similarity=-0.094 Sum_probs=54.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
.+.+.|++++|.+.+.+.++.. .-+...|..+=..|.+.|++++|.+.|++.. .| +..+|+.+-..|.+.|++++|
T Consensus 52 ~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA 130 (723)
T 4gyw_A 52 VLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3456677777777777776653 1235567777777777777777777777653 23 456677777777777777777
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
++.|
T Consensus 131 i~~~ 134 (723)
T 4gyw_A 131 IASY 134 (723)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 93
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.23 E-value=0.00057 Score=36.38 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 14 ~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
++.+.+....+.. +.+...+..+-..|.+.|++++|...|++.. .| +..+|..+-..|.+.|+.++|.+.|
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555554432 2345677777777888888888888887654 23 4567777777888888888887665
No 94
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.20 E-value=0.00088 Score=37.17 Aligned_cols=80 Identities=5% Similarity=-0.185 Sum_probs=62.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHH--HHHHHhhcCChh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTA--IIAAFAQEWEVD 79 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~--li~~~~~~g~~~ 79 (86)
.+...|++++|.+.+....+.. +.+...+..+-..|.+.|++++|...|++..+ | +...+.. +...+.+.|+++
T Consensus 56 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 134 (166)
T 1a17_A 56 AYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 134 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998874 34567888888999999999999999998642 3 4445533 344478889999
Q ss_pred Hhhhcc
Q 043594 80 MCYTFI 85 (86)
Q Consensus 80 ~a~~~f 85 (86)
+|++.+
T Consensus 135 ~A~~~~ 140 (166)
T 1a17_A 135 RAIAGD 140 (166)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 998765
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.20 E-value=0.0051 Score=38.10 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=60.6
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-------------------------
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV------------------------- 59 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------------------------- 59 (86)
.+...|++++|.+++.+..+.. +-+...+..+-..|.+.|++++|...+++...
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a 204 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPE 204 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCcc
Confidence 3456899999999999998764 23556788888999999999999999998742
Q ss_pred -----------C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 60 -----------R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 60 -----------~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
| +...+..+-..|.+.|+.++|.+.|
T Consensus 205 ~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 205 IQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2 3445666667777777777777654
No 96
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.14 E-value=0.0018 Score=38.20 Aligned_cols=80 Identities=8% Similarity=0.025 Sum_probs=64.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC-h-------hhHHHHHHHHhh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN-V-------VSWTAIIAAFAQ 74 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~-~-------~t~~~li~~~~~ 74 (86)
.+.+.|++++|.+.+....+.. +.+...+..+-..|.+.|++++|.+.|++.. .|+ . .+|..+=..+.+
T Consensus 51 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~ 129 (228)
T 4i17_A 51 CADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ 129 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH
Confidence 4557899999999999998754 2366788889999999999999999999764 243 3 346777778899
Q ss_pred cCChhHhhhcc
Q 043594 75 EWEVDMCYTFI 85 (86)
Q Consensus 75 ~g~~~~a~~~f 85 (86)
.|++++|.+.|
T Consensus 130 ~~~~~~A~~~~ 140 (228)
T 4i17_A 130 AGNIEKAEENY 140 (228)
T ss_dssp TTCHHHHHHHH
T ss_pred hccHHHHHHHH
Confidence 99999999876
No 97
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.12 E-value=0.0007 Score=35.53 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+...+..+...|.+.|++++|.+.|+++.. | +..+|..+...|.+.|++++|...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 66 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 356788888999999999999999998752 3 6778999999999999999998876
No 98
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.11 E-value=0.0018 Score=41.28 Aligned_cols=79 Identities=10% Similarity=-0.097 Sum_probs=64.6
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHH------------------HHHHHHHHHHhcCChHHHHHhhcCCC--CC-Chh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVY------------------VGSSLISFCGKCGENIDVYKMFEKMP--VR-NVV 63 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~------------------~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~ 63 (86)
.+.+.|++++|.+.|....+.. |+.. .|..+-..|.+.|++++|...|++.. .| +..
T Consensus 188 ~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 265 (338)
T 2if4_A 188 SLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK 265 (338)
T ss_dssp HTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3557889999999999887753 4433 78888889999999999999998764 24 677
Q ss_pred hHHHHHHHHhhcCChhHhhhcc
Q 043594 64 SWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 64 t~~~li~~~~~~g~~~~a~~~f 85 (86)
.|..+-.+|.+.|++++|.+.|
T Consensus 266 a~~~lg~a~~~~g~~~~A~~~l 287 (338)
T 2if4_A 266 ALFRRGKAKAELGQMDSARDDF 287 (338)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 8899999999999999998766
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.09 E-value=0.00017 Score=40.74 Aligned_cols=77 Identities=8% Similarity=-0.123 Sum_probs=58.7
Q ss_pred hcCCchhHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
...|++++|.+.+..... ..|+ +..+-.+=..|.+.|++++|.+.|++.. .| +..+|..+-..|.+.|++++|.
T Consensus 8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 345677777776665543 2343 3345566788999999999999999864 34 6788999999999999999999
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
..|
T Consensus 86 ~~~ 88 (150)
T 4ga2_A 86 ECY 88 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 100
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.08 E-value=0.00067 Score=38.62 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=60.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHH-HhhcCCh--
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAA-FAQEWEV-- 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~-~~~~g~~-- 78 (86)
.+...|++++|...+....+.. +.+...+..+-..|...|++++|...|++..+ | +...|..+-.. |.+.|+.
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3556788999999999888764 34667888999999999999999999998653 3 56677777778 7789998
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|.+.|
T Consensus 98 ~~A~~~~ 104 (177)
T 2e2e_A 98 AQTRAMI 104 (177)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
No 101
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.07 E-value=0.00099 Score=40.50 Aligned_cols=81 Identities=10% Similarity=-0.062 Sum_probs=64.8
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch---HHHHHHHHHHHHhcCChHHHHHhhcCCCC--------C-ChhhHHHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN---VYVGSSLISFCGKCGENIDVYKMFEKMPV--------R-NVVSWTAIIAAF 72 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~-~~~t~~~li~~~ 72 (86)
.+...|++++|...+....+..-... ..++..+-..|...|++++|.+.+++..+ | ...+|..+-..|
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 34578999999999999988742211 46788888999999999999999987531 1 356788888999
Q ss_pred hhcCChhHhhhcc
Q 043594 73 AQEWEVDMCYTFI 85 (86)
Q Consensus 73 ~~~g~~~~a~~~f 85 (86)
...|++++|.+.|
T Consensus 94 ~~~g~~~~A~~~~ 106 (338)
T 3ro2_A 94 KVLGNFDEAIVCC 106 (338)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHccCHHHHHHHH
Confidence 9999999998765
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.03 E-value=0.0011 Score=44.64 Aligned_cols=75 Identities=4% Similarity=-0.129 Sum_probs=32.7
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
.|++++|.+.+.+..+.. ..+...+..+-..|.+.|++++|.+.|++.. .| +...|..+-..|.+.|+.++|.+.
T Consensus 36 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 113 (568)
T 2vsy_A 36 MGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA 113 (568)
T ss_dssp HTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344445544444444332 1123344444444444555555555444332 12 233444444444444444444443
No 103
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.02 E-value=0.00091 Score=35.09 Aligned_cols=51 Identities=10% Similarity=-0.089 Sum_probs=27.9
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
+.+.|++++|.+.+....+.. +.+...|..+-..|.+.|++++|.+.|++.
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334556666666666665543 113345555555666666666666666543
No 104
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.00 E-value=0.0033 Score=40.65 Aligned_cols=81 Identities=7% Similarity=-0.113 Sum_probs=65.2
Q ss_pred chhcCCchhHHHHHHHHHHHH--------------cCC-chHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRS--------------GFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWT 66 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~--------------g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~ 66 (86)
.+.+.|++++|.+.+....+. ... .+..+|..+-..|.+.|++++|.+.+++..+ | +...|.
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 311 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALY 311 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHH
Confidence 355789999999999988762 022 2456888888999999999999999987643 4 567888
Q ss_pred HHHHHHhhcCChhHhhhcc
Q 043594 67 AIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 67 ~li~~~~~~g~~~~a~~~f 85 (86)
.+-.+|.+.|+.++|.+.|
T Consensus 312 ~lg~~~~~~g~~~eA~~~l 330 (370)
T 1ihg_A 312 RRAQGWQGLKEYDQALADL 330 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHH
Confidence 8889999999999998765
No 105
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.99 E-value=0.002 Score=42.63 Aligned_cols=81 Identities=10% Similarity=-0.237 Sum_probs=65.1
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch--------------HHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN--------------VYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTA 67 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~ 67 (86)
.+.+.|++++|...|...++..-... ...|..+-.+|.+.|++++|...|++..+ | +...|..
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 356 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYR 356 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHH
Confidence 35578899999999999887532111 57888888999999999999999997642 3 6778888
Q ss_pred HHHHHhhcCChhHhhhcc
Q 043594 68 IIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 68 li~~~~~~g~~~~a~~~f 85 (86)
+-.+|.+.|++++|...|
T Consensus 357 ~g~a~~~~g~~~~A~~~~ 374 (457)
T 1kt0_A 357 RGEAQLLMNEFESAKGDF 374 (457)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHH
Confidence 889999999999998766
No 106
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.93 E-value=0.0022 Score=38.84 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=6.9
Q ss_pred CCchhHHHHHHHHHHHH
Q 043594 9 TRNIRGGTQYQCLAVRS 25 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~ 25 (86)
.+++++|.+.+....+.
T Consensus 55 ~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL 71 (273)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC
Confidence 33444444444444333
No 107
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.92 E-value=0.00057 Score=37.36 Aligned_cols=81 Identities=10% Similarity=-0.026 Sum_probs=58.4
Q ss_pred chhcCCchhHHHHHHHHHHHHcCC-ch----HHHHHHHHHHHHhcCChHHHHHhhcCCCC-----CC----hhhHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFV-AN----VYVGSSLISFCGKCGENIDVYKMFEKMPV-----RN----VVSWTAIIA 70 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~t~~~li~ 70 (86)
.+...|++++|.+.+....+..-. ++ ..++..+-..|...|++++|.+.|++..+ ++ ..++..+-.
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 97 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 97 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 345678899999988887654211 11 24777788888899999999998887531 11 446777778
Q ss_pred HHhhcCChhHhhhcc
Q 043594 71 AFAQEWEVDMCYTFI 85 (86)
Q Consensus 71 ~~~~~g~~~~a~~~f 85 (86)
.|...|++++|.+.|
T Consensus 98 ~~~~~~~~~~A~~~~ 112 (164)
T 3ro3_A 98 TYTLLQDYEKAIDYH 112 (164)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH
Confidence 888999999988765
No 108
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.90 E-value=0.0026 Score=38.47 Aligned_cols=77 Identities=5% Similarity=-0.084 Sum_probs=63.0
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHh----cCChHHHHHhhcCCCC-CChhhHHHHHHHHhh----cC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK----CGENIDVYKMFEKMPV-RNVVSWTAIIAAFAQ----EW 76 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~t~~~li~~~~~----~g 76 (86)
+...|++++|.+.+....+.+ ++..+..+-..|.. .|++++|.+.|++..+ .+..++..+-..|.+ .|
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 92 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQ 92 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCccc
Confidence 456789999999999998843 45677778888888 9999999999997643 366778888888888 99
Q ss_pred ChhHhhhcc
Q 043594 77 EVDMCYTFI 85 (86)
Q Consensus 77 ~~~~a~~~f 85 (86)
+.++|++.|
T Consensus 93 ~~~~A~~~~ 101 (273)
T 1ouv_A 93 NTNKALQYY 101 (273)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998776
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.90 E-value=0.0029 Score=42.51 Aligned_cols=80 Identities=5% Similarity=-0.084 Sum_probs=67.4
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhc---CCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQE---WEV 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~---g~~ 78 (86)
.+...|++++|.+.+.+..+.. ..+...+..+-..|.+.|++++|.+.|++.. .| +...|..+...|.+. |+.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~ 144 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccH
Confidence 4567899999999999998874 3356788899999999999999999999864 24 567888899999999 999
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|.+.|
T Consensus 145 ~~A~~~~ 151 (568)
T 2vsy_A 145 DVLSAQV 151 (568)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.89 E-value=0.0022 Score=39.54 Aligned_cols=79 Identities=8% Similarity=0.016 Sum_probs=57.6
Q ss_pred hcCCchhHHHHHHHHHHHHcCCc-h----HHHHHHHHHHHHhcCChHHHHHhhcCCC-------C--C-ChhhHHHHHHH
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVA-N----VYVGSSLISFCGKCGENIDVYKMFEKMP-------V--R-NVVSWTAIIAA 71 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~-~----~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~--~-~~~t~~~li~~ 71 (86)
...+++++|.+.+....+..... | ..+++.+-..|...|++++|...|++.. . + ...+|+.+-..
T Consensus 126 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 3u3w_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp TTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 45568888888888887743222 2 2368888888888999998888888654 1 1 12367788888
Q ss_pred HhhcCChhHhhhcc
Q 043594 72 FAQEWEVDMCYTFI 85 (86)
Q Consensus 72 ~~~~g~~~~a~~~f 85 (86)
|.+.|+.++|.+.|
T Consensus 206 y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 206 LYLDSRYEESLYQV 219 (293)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHH
Confidence 99999999988765
No 111
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.87 E-value=0.0009 Score=44.55 Aligned_cols=72 Identities=4% Similarity=-0.030 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC-h-hhHHHHHHHHhhcCChhHhhhcc
Q 043594 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN-V-VSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 14 ~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~-~-~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+|.+++.+..+.-.+.+...|..+...+.+.|++++|..+|++.. .|+ . ..|..+...+.+.|+.++|.++|
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 556666555542122245566666666666666666666666543 232 1 35666666555666666665554
No 112
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.86 E-value=0.002 Score=42.02 Aligned_cols=78 Identities=10% Similarity=-0.042 Sum_probs=45.8
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC-hHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhh
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGE-NIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
.+.|+.++|.+.+...++.. .-+...|+.+-..|.+.|+ +++|...|++... | +...|+.+-..|.+.|++++|+
T Consensus 108 ~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 34566666776666666543 2234566666666666665 7777666665532 2 4455666666666666666665
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
..|
T Consensus 187 ~~~ 189 (382)
T 2h6f_A 187 EFI 189 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 113
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.85 E-value=0.0045 Score=32.54 Aligned_cols=73 Identities=12% Similarity=-0.036 Sum_probs=58.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~ 78 (86)
.+...|++++|.+.+....+.. ..+...+..+-..|.+.|++++|...|++.. .| +...|..+...+.+.|+.
T Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 55 AYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 4567899999999999998864 3356788888899999999999999999764 24 567788787888777764
No 114
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.85 E-value=0.0017 Score=41.26 Aligned_cols=81 Identities=11% Similarity=-0.029 Sum_probs=64.6
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch---HHHHHHHHHHHHhcCChHHHHHhhcCCCC--------C-ChhhHHHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN---VYVGSSLISFCGKCGENIDVYKMFEKMPV--------R-NVVSWTAIIAAF 72 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~-~~~t~~~li~~~ 72 (86)
.+...|++++|.+.+....+..-... ..++..+-..|...|++++|...|++..+ | ...+|..+-..|
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 136 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 34578999999999999988742211 24788888999999999999999887531 2 356788888999
Q ss_pred hhcCChhHhhhcc
Q 043594 73 AQEWEVDMCYTFI 85 (86)
Q Consensus 73 ~~~g~~~~a~~~f 85 (86)
...|++++|.+.|
T Consensus 137 ~~~g~~~~A~~~~ 149 (411)
T 4a1s_A 137 KVMGRFDEAAICC 149 (411)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHH
Confidence 9999999998876
No 115
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.83 E-value=0.0012 Score=43.89 Aligned_cols=75 Identities=12% Similarity=-0.081 Sum_probs=53.5
Q ss_pred CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc--------CChHHHHHhhcCCC--CC----ChhhHHHHHHHHhhc
Q 043594 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC--------GENIDVYKMFEKMP--VR----NVVSWTAIIAAFAQE 75 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~--------g~~~~A~~~~~~m~--~~----~~~t~~~li~~~~~~ 75 (86)
|++++|.+.+.+..+.. ..+...|..+-..|... |++++|.+.|++.. .| +...|..+-..|.+.
T Consensus 193 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~ 271 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE 271 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc
Confidence 77778888887777754 23456777777777777 77888888777653 24 566777777778888
Q ss_pred CChhHhhhcc
Q 043594 76 WEVDMCYTFI 85 (86)
Q Consensus 76 g~~~~a~~~f 85 (86)
|++++|.+.|
T Consensus 272 g~~~~A~~~~ 281 (474)
T 4abn_A 272 ESYGEALEGF 281 (474)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8888877655
No 116
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.75 E-value=0.0026 Score=39.94 Aligned_cols=81 Identities=10% Similarity=-0.047 Sum_probs=64.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCc-h--HHHHHHHHHHHHhcCChHHHHHhhcCCCC--------C-ChhhHHHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVA-N--VYVGSSLISFCGKCGENIDVYKMFEKMPV--------R-NVVSWTAIIAAF 72 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~-~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~-~~~t~~~li~~~ 72 (86)
.+.+.|++++|...+....+..-.. . ..++..+-..|...|++++|...|++... | ...+|..+-..|
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3557899999999999998874221 1 35788888999999999999999886521 1 245788888999
Q ss_pred hhcCChhHhhhcc
Q 043594 73 AQEWEVDMCYTFI 85 (86)
Q Consensus 73 ~~~g~~~~a~~~f 85 (86)
...|++++|.+.|
T Consensus 98 ~~~g~~~~A~~~~ 110 (406)
T 3sf4_A 98 KVLGNFDEAIVCC 110 (406)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 9999999998765
No 117
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0024 Score=33.10 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
++...+..+-..|.+.|++++|.+.|++.. .| +...|..+-..|.+.|++++|.+.|
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 355677778888999999999999999764 24 6778888889999999999998765
No 118
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.72 E-value=0.002 Score=41.98 Aligned_cols=79 Identities=9% Similarity=0.023 Sum_probs=57.8
Q ss_pred hhcCCc-hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHHHHhhcCChhHh
Q 043594 6 CGSTRN-IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 6 ~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~g~~~~a 81 (86)
+.+.|+ +++|.+.+...++.. .-+...|+.+-..|.+.|++++|...|++... .+...|..+-..+.+.|++++|
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence 345675 888888888887764 22456777777788888888888888887642 3667787777888888888887
Q ss_pred hhcc
Q 043594 82 YTFI 85 (86)
Q Consensus 82 ~~~f 85 (86)
++.|
T Consensus 220 l~~~ 223 (382)
T 2h6f_A 220 LQYV 223 (382)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 119
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.70 E-value=0.0015 Score=37.46 Aligned_cols=81 Identities=10% Similarity=-0.061 Sum_probs=60.7
Q ss_pred chhcCCchhHHHHHHHHHHHH----cCC--chHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----CC----hhhHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRS----GFV--ANVYVGSSLISFCGKCGENIDVYKMFEKMPV-----RN----VVSWTAII 69 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~----g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~t~~~li 69 (86)
.+...|++++|.+.+.+..+. +-. .....+..+-..|...|++++|...+++... ++ ..++..+-
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 455789999999999887664 212 2345677888899999999999999887531 12 23457777
Q ss_pred HHHhhcCChhHhhhcc
Q 043594 70 AAFAQEWEVDMCYTFI 85 (86)
Q Consensus 70 ~~~~~~g~~~~a~~~f 85 (86)
..|.+.|++++|.+.|
T Consensus 155 ~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHW 170 (203)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHH
Confidence 8899999999998765
No 120
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.66 E-value=0.0019 Score=39.26 Aligned_cols=80 Identities=10% Similarity=-0.054 Sum_probs=51.4
Q ss_pred hhcCCchhHHHHHHHHHHHHc--C--Cc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----CC----hhhHHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSG--F--VA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV-----RN----VVSWTAIIAA 71 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g--~--~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~t~~~li~~ 71 (86)
+...|++++|.+.+....+.. . .+ ...++..+-..|...|++++|...+++..+ ++ ..+|..+-..
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 312 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 312 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 445677777777777665432 1 11 144666667777778888888777776531 11 3456677777
Q ss_pred HhhcCChhHhhhcc
Q 043594 72 FAQEWEVDMCYTFI 85 (86)
Q Consensus 72 ~~~~g~~~~a~~~f 85 (86)
|.+.|++++|.+.|
T Consensus 313 ~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 313 YTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHcCChHHHHHHH
Confidence 88888888877665
No 121
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.62 E-value=0.0031 Score=40.00 Aligned_cols=81 Identities=6% Similarity=-0.145 Sum_probs=57.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcC--C---chHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----C----ChhhHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGF--V---ANVYVGSSLISFCGKCGENIDVYKMFEKMPV-----R----NVVSWTAIIA 70 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~--~---~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~----~~~t~~~li~ 70 (86)
.+...|++++|.+.+....+..- . ....++..+-..|.+.|++++|...|++..+ + ...+|..+-.
T Consensus 272 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 351 (411)
T 4a1s_A 272 SHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGN 351 (411)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 45677888888888887765421 1 1245777778888888888888888886532 1 1346777788
Q ss_pred HHhhcCChhHhhhcc
Q 043594 71 AFAQEWEVDMCYTFI 85 (86)
Q Consensus 71 ~~~~~g~~~~a~~~f 85 (86)
.|.+.|+.++|.+.|
T Consensus 352 ~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 352 AHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHH
Confidence 888888888888765
No 122
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.62 E-value=0.011 Score=29.35 Aligned_cols=68 Identities=13% Similarity=-0.010 Sum_probs=44.5
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQ 74 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~ 74 (86)
+.+.|++++|.+.+....+.. +.+..++..+-..|.+.|++++|...|++.. .| +...+..+-..+.+
T Consensus 19 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 446678888888888777654 2345667777777888888888888877653 23 34455554444433
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.62 E-value=0.0041 Score=38.32 Aligned_cols=80 Identities=8% Similarity=0.007 Sum_probs=59.9
Q ss_pred hhcCCchhHHHHHHHHHHHHcC---Cch--HHHHHHHHHHHHhcCChHHHHHhhcCCC-----CCC-----hhhHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGF---VAN--VYVGSSLISFCGKCGENIDVYKMFEKMP-----VRN-----VVSWTAIIA 70 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~---~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~-----~~t~~~li~ 70 (86)
+...|++++|.+.+....+... .+. ..+++.+-..|...|++++|...|++.. .|+ ..+|+.+-.
T Consensus 125 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 3466788899888888765321 111 4588888899999999999999888753 122 257888888
Q ss_pred HHhhcCChhHhhhcc
Q 043594 71 AFAQEWEVDMCYTFI 85 (86)
Q Consensus 71 ~~~~~g~~~~a~~~f 85 (86)
.|.+.|++++|.+.|
T Consensus 205 ~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 205 ALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH
Confidence 999999999998776
No 124
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.61 E-value=0.0035 Score=31.34 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+...+..+-..|.+.|++++|...|++.. .| +..+|..+-..|.+.|++++|.+.|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45577778888999999999999999764 23 5678888999999999999998865
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.60 E-value=0.0031 Score=33.51 Aligned_cols=58 Identities=9% Similarity=0.046 Sum_probs=49.5
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 28 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..+...+..+-..|.+.|++++|...|++... | +..+|..+-..|.+.|++++|.+.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 73 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHH
Confidence 45677888888999999999999999997542 3 6788999999999999999998876
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.60 E-value=0.0032 Score=36.01 Aligned_cols=78 Identities=4% Similarity=-0.187 Sum_probs=57.0
Q ss_pred hcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---------CChhhHHHHHHHHhhcCC
Q 043594 7 GSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---------RNVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 7 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~t~~~li~~~~~~g~ 77 (86)
...|++++|.+++..+.. .-.....++..+-..|...|++++|...|++... ....+++.+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 357899999995554432 2224677888888999999999999998886532 134577888889999999
Q ss_pred hhHhhhcc
Q 043594 78 VDMCYTFI 85 (86)
Q Consensus 78 ~~~a~~~f 85 (86)
+++|.+.|
T Consensus 82 ~~~A~~~~ 89 (203)
T 3gw4_A 82 WDAARRCF 89 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 127
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.59 E-value=0.007 Score=35.27 Aligned_cols=80 Identities=6% Similarity=-0.095 Sum_probs=63.8
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCc-----------hHHHHHHHHHHHHhcCChHHHHHhhcCCC---------CC-Chhh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVA-----------NVYVGSSLISFCGKCGENIDVYKMFEKMP---------VR-NVVS 64 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~-----------~~~~~~~li~~y~~~g~~~~A~~~~~~m~---------~~-~~~t 64 (86)
+.+.|++++|.+.|....+..=.. +...|+.+=.++.+.|++++|...|++.. .| +...
T Consensus 21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A 100 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 100 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence 446799999999999998764220 23388999999999999999999988653 44 4567
Q ss_pred H----HHHHHHHhhcCChhHhhhcc
Q 043594 65 W----TAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 65 ~----~~li~~~~~~g~~~~a~~~f 85 (86)
| ...=.++...|+.++|++.|
T Consensus 101 ~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 101 WISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 8 88888999999999999876
No 128
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.54 E-value=0.005 Score=38.05 Aligned_cols=81 Identities=6% Similarity=-0.150 Sum_probs=60.6
Q ss_pred chhcC-CchhHHHHHHHHHHHHc--CCc--h-HHHHHHHHHHHHhcCChHHHHHhhcCCCC--CCh--h------hHHHH
Q 043594 5 SCGST-RNIRGGTQYQCLAVRSG--FVA--N-VYVGSSLISFCGKCGENIDVYKMFEKMPV--RNV--V------SWTAI 68 (86)
Q Consensus 5 ~~~~~-~~~~~a~~~~~~m~~~g--~~~--~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~--~------t~~~l 68 (86)
.+.+. |++++|.+.+.+..+.. ... . ..+++.+-..|.+.|++++|...|++..+ |+. . +|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 34454 99999999999887642 111 1 35688888999999999999999997632 221 1 46777
Q ss_pred HHHHhhcCChhHhhhcc
Q 043594 69 IAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 69 i~~~~~~g~~~~a~~~f 85 (86)
-..|...|+.++|...|
T Consensus 206 g~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 78899999999998765
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.52 E-value=0.0036 Score=35.69 Aligned_cols=55 Identities=11% Similarity=-0.105 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...+..+=..|.+.|++++|...|++.. .| +...|..+=..|.+.|++++|++.|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4466777788899999999999999875 35 6788999999999999999999876
No 130
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.51 E-value=0.0034 Score=39.42 Aligned_cols=81 Identities=10% Similarity=-0.085 Sum_probs=51.6
Q ss_pred chhcCCchhHHHHHHHHHHHHc----CCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----CC----hhhHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSG----FVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV-----RN----VVSWTAIIA 70 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~t~~~li~ 70 (86)
.+...|++++|.+.+....+.. -.+ ...++..+-..|.+.|++++|...|++..+ ++ ..+|..+-.
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3456677777777777765431 111 144666677777777888877777776431 11 446666777
Q ss_pred HHhhcCChhHhhhcc
Q 043594 71 AFAQEWEVDMCYTFI 85 (86)
Q Consensus 71 ~~~~~g~~~~a~~~f 85 (86)
.|.+.|++++|.+.|
T Consensus 316 ~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 316 AYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 777778887777654
No 131
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=96.48 E-value=0.0058 Score=40.67 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=55.6
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----C--ChhhHHHHHHHHhhcCChhH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-----R--NVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~--~~~t~~~li~~~~~~g~~~~ 80 (86)
..|+.++|..+|+...+.. +.++.+|..++..+.+.|+.++|+.+|++... | ....|...+.-..+.|+.+.
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4677888888888877653 23567888888888888888888888886532 2 13367777777778888877
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
+.+++
T Consensus 482 ~~~~~ 486 (530)
T 2ooe_A 482 ILKVE 486 (530)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 132
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.47 E-value=0.0031 Score=40.42 Aligned_cols=82 Identities=4% Similarity=-0.083 Sum_probs=58.8
Q ss_pred cchhcCCchhHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-----ChhhHHHHHHH--Hh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-----NVVSWTAIIAA--FA 73 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-----~~~t~~~li~~--~~ 73 (86)
.++...|++++|.+++...+..|- .-+...+..++..|.+.|+.+.|.+.+++|.+ | +..+..-|..+ ..
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF 187 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHH
Confidence 345567899999998887755542 23666888888999999999999999998864 5 24555555555 22
Q ss_pred h--cCChhHhhhcc
Q 043594 74 Q--EWEVDMCYTFI 85 (86)
Q Consensus 74 ~--~g~~~~a~~~f 85 (86)
. .++..+|+.+|
T Consensus 188 ~~g~~~~q~A~~~f 201 (310)
T 3mv2_B 188 ATNKETATSNFYYY 201 (310)
T ss_dssp HHTCSTTTHHHHHH
T ss_pred HhCCccHHHHHHHH
Confidence 2 33888888776
No 133
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.46 E-value=0.0026 Score=42.44 Aligned_cols=80 Identities=5% Similarity=-0.175 Sum_probs=60.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHH--HhhcCChh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAA--FAQEWEVD 79 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~--~~~~g~~~ 79 (86)
++.+.|++++|.+.+.+..+.. ..+...+..+-..|.+.|++++|.+.|++.. .| +...+..+-.+ +.+.|+++
T Consensus 49 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~ 127 (477)
T 1wao_1 49 AYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 127 (477)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998863 3356788888999999999999999999764 24 44556665555 88889999
Q ss_pred Hhhhcc
Q 043594 80 MCYTFI 85 (86)
Q Consensus 80 ~a~~~f 85 (86)
+|.+.+
T Consensus 128 ~A~~~~ 133 (477)
T 1wao_1 128 RAIAGD 133 (477)
T ss_dssp CC----
T ss_pred HHhccc
Confidence 998765
No 134
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.45 E-value=0.0072 Score=34.43 Aligned_cols=69 Identities=4% Similarity=-0.054 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC---hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 15 GTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN---VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 15 a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~---~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+.+.+....+. .| ++..+..+-..|.+.|++++|...|++.. .|+ ...|..+...|...|+.++|...|
T Consensus 93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 34445444443 34 46778888889999999999999998764 243 558899999999999999988765
No 135
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.43 E-value=0.0027 Score=34.55 Aligned_cols=81 Identities=10% Similarity=-0.054 Sum_probs=61.0
Q ss_pred chhcCCchhHHHHHHHHHHHHc--C--Cc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----C----ChhhHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSG--F--VA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV-----R----NVVSWTAIIA 70 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g--~--~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~----~~~t~~~li~ 70 (86)
.+...|++++|.+.+....+.. . .+ ...++..+-..|...|++++|.+.+++..+ + ...++..+-.
T Consensus 58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 137 (164)
T 3ro3_A 58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN 137 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHH
Confidence 4557899999999999876642 1 11 245677788889999999999999886531 1 1346777888
Q ss_pred HHhhcCChhHhhhcc
Q 043594 71 AFAQEWEVDMCYTFI 85 (86)
Q Consensus 71 ~~~~~g~~~~a~~~f 85 (86)
.|.+.|+.++|.+.|
T Consensus 138 ~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 138 AYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHccCHHHHHHHH
Confidence 899999999998765
No 136
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.38 E-value=0.0047 Score=31.92 Aligned_cols=56 Identities=16% Similarity=0.033 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+...+..+-..+...|++++|...|++.. .| +...|..+-..|.+.|++++|.+.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHH
Confidence 45567778888999999999999999864 24 6778888899999999999998765
No 137
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.31 E-value=0.0059 Score=33.04 Aligned_cols=57 Identities=14% Similarity=-0.051 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC----hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN----VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~----~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.+...+..+-..|.+.|++++|.+.|++.. .|+ ...|..+-..|.+.|++++|.+.|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 88 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEA 88 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 356678888889999999999999999764 355 677888889999999999998765
No 138
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.31 E-value=0.0064 Score=38.61 Aligned_cols=81 Identities=6% Similarity=-0.106 Sum_probs=62.6
Q ss_pred chhcCCchhHHHHHHHHHHHHc----CCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC--------CC-hhhHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSG----FVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV--------RN-VVSWTAIIA 70 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~-~~t~~~li~ 70 (86)
.+...|++++|.+.+....+.. -.+ ...++..+=..|...|++++|.+.|++..+ |+ ..++..+-.
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 4567799999999998887642 111 224788888999999999999998886532 32 456888889
Q ss_pred HHhhcCChhHhhhcc
Q 043594 71 AFAQEWEVDMCYTFI 85 (86)
Q Consensus 71 ~~~~~g~~~~a~~~f 85 (86)
.|.+.|+.++|.+.|
T Consensus 273 ~~~~~g~~~~A~~~~ 287 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYH 287 (383)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 999999999998876
No 139
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.30 E-value=0.024 Score=34.99 Aligned_cols=82 Identities=5% Similarity=-0.095 Sum_probs=57.6
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchH------HHHHHHHHHHHhcCChHHHHHhhcCCCC--CChh------hHHHHH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANV------YVGSSLISFCGKCGENIDVYKMFEKMPV--RNVV------SWTAII 69 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~------t~~~li 69 (86)
..+.+.|++++|...+....+..-.... ..+..+-..|...|++++|...|++..+ |+.. .+..++
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 3456789999999999999886533322 1567777889999999999999998753 3321 344566
Q ss_pred HHHh--hcCChhHhhhcc
Q 043594 70 AAFA--QEWEVDMCYTFI 85 (86)
Q Consensus 70 ~~~~--~~g~~~~a~~~f 85 (86)
.+|. ..+++++|++.|
T Consensus 246 ~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHTTCTTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh
Confidence 6664 456788888765
No 140
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.29 E-value=0.0096 Score=35.81 Aligned_cols=52 Identities=4% Similarity=-0.221 Sum_probs=26.7
Q ss_pred hhcCCchhHHHHHHHHHHHHc--CCchHHHHHHHHHHHHh--------cCChHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGK--------CGENIDVYKMFEKM 57 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~y~~--------~g~~~~A~~~~~~m 57 (86)
+.+.|++++|...+....+.. -......+..+-..|.+ .|++++|...|++.
T Consensus 62 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 62 YYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 344556666666666665542 11122334444445555 56666666666654
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.29 E-value=0.0024 Score=32.84 Aligned_cols=55 Identities=11% Similarity=-0.070 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...+..+-..|.+.|++++|...|++.. ..+..+|..+-..|.+.|++++|.+.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 63 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4466777788899999999999999764 236778888999999999999999876
No 142
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.28 E-value=0.0042 Score=38.70 Aligned_cols=79 Identities=5% Similarity=-0.142 Sum_probs=49.7
Q ss_pred hhcCCchhHHHHHHHHHHHHcCC----c-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----CC----hhhHHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFV----A-NVYVGSSLISFCGKCGENIDVYKMFEKMPV-----RN----VVSWTAIIAA 71 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~----~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~t~~~li~~ 71 (86)
+.+ |++++|.+.+.+..+..-. + ...+++.+-..|.+.|++++|...|++... ++ ..+|..+...
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~ 204 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLV 204 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 344 7777777777776553211 1 134667777778888888888887776532 11 1245556666
Q ss_pred HhhcCChhHhhhcc
Q 043594 72 FAQEWEVDMCYTFI 85 (86)
Q Consensus 72 ~~~~g~~~~a~~~f 85 (86)
+...|+.++|.+.|
T Consensus 205 ~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 205 QLHRADYVAAQKCV 218 (307)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 67778888877655
No 143
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.22 E-value=0.0059 Score=32.12 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...+..+-..|...|++++|...|++.. ..+...|..+-..|.+.|++++|...|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 61 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4567777888999999999999999764 236778888999999999999998875
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.20 E-value=0.007 Score=33.93 Aligned_cols=56 Identities=13% Similarity=-0.035 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+...+..+-..+.+.|++++|...|++.. .| +...|..+-..|.+.|++++|++.|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34466777788999999999999999764 34 6788888889999999999999876
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.20 E-value=0.0076 Score=32.40 Aligned_cols=57 Identities=4% Similarity=-0.169 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 29 ANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 29 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.+...+..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|++++|...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 66 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 66 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 456778888889999999999999999764 24 5778999999999999999998765
No 146
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.16 E-value=0.012 Score=34.59 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=54.0
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhc
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQE 75 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~ 75 (86)
.+.+.|++++|.+.+....+.. +-++..+..+-..|...|++++|...|++.. .| +..+|..+-..|...
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999998864 3356788888899999999999999999874 34 456666665555433
No 147
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.15 E-value=0.0059 Score=38.82 Aligned_cols=81 Identities=7% Similarity=-0.005 Sum_probs=62.4
Q ss_pred chhcCCchhHHHHHHHHHHHH----cCC-chHHHHHHHHHHHHhcCChHHHHHhhcCCCC-------C-ChhhHHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRS----GFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMPV-------R-NVVSWTAIIAA 71 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~-~~~t~~~li~~ 71 (86)
.+...|++++|.+.+....+. +-. ....+++.+=..|...|++++|.+.|++..+ | ...++..+-..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 456789999999999888664 211 1234677788889999999999999987532 3 24567788889
Q ss_pred HhhcCChhHhhhcc
Q 043594 72 FAQEWEVDMCYTFI 85 (86)
Q Consensus 72 ~~~~g~~~~a~~~f 85 (86)
|.+.|+.++|.+.|
T Consensus 271 ~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 271 LCKAGQTQKAFQFI 284 (378)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHH
Confidence 99999999998876
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.09 E-value=0.0048 Score=38.01 Aligned_cols=80 Identities=5% Similarity=-0.210 Sum_probs=61.1
Q ss_pred chhcCCchhHHHHHHHHHHHH---c-CCc--hHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC-------hhhHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRS---G-FVA--NVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN-------VVSWTAII 69 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~---g-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-------~~t~~~li 69 (86)
.+...|++++|.+.+....+. . -.+ ...+++.+-..|.+.|++++|...|++..+ ++ ..+|..+-
T Consensus 164 ~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg 243 (293)
T 2qfc_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456789999999999998742 1 111 225888899999999999999999986531 11 45678888
Q ss_pred HHHhhcCChhHh-hhc
Q 043594 70 AAFAQEWEVDMC-YTF 84 (86)
Q Consensus 70 ~~~~~~g~~~~a-~~~ 84 (86)
..|.+.|+.++| .+.
T Consensus 244 ~~y~~~g~~~~Ai~~~ 259 (293)
T 2qfc_A 244 ECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCcHHHHHHH
Confidence 899999999999 543
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.07 E-value=0.0082 Score=33.69 Aligned_cols=56 Identities=9% Similarity=-0.083 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+...+..+-..|.+.|++++|.+.|++.. .| +...|..+-..|.+.|++++|++.|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 68 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDA 68 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45677778888999999999999999864 34 6788999999999999999999876
No 150
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.05 E-value=0.005 Score=38.33 Aligned_cols=80 Identities=5% Similarity=-0.060 Sum_probs=59.8
Q ss_pred chhcCCchhHHHHHHHHHHHHcC---Cc--hHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C---C----hhhHHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGF---VA--NVYVGSSLISFCGKCGENIDVYKMFEKMPV--R---N----VVSWTAIIA 70 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~---~~--~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~----~~t~~~li~ 70 (86)
.+.+.|++++|.+.+....+.-- .+ -..+++.+-..|.+ |++++|...|++..+ | + ..+|+.+-.
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 163 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 45567889999998888765421 12 24577778888888 999999999986532 1 1 457788889
Q ss_pred HHhhcCChhHhhhcc
Q 043594 71 AFAQEWEVDMCYTFI 85 (86)
Q Consensus 71 ~~~~~g~~~~a~~~f 85 (86)
.|.+.|++++|++.|
T Consensus 164 ~~~~~g~~~~A~~~~ 178 (307)
T 2ifu_A 164 LLVRQQKFDEAAASL 178 (307)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 999999999998876
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.03 E-value=0.0052 Score=37.86 Aligned_cols=81 Identities=5% Similarity=-0.223 Sum_probs=61.6
Q ss_pred chhcCCchhHHHHHHHHHHHH-----cCCch-HHHHHHHHHHHHhcCChHHHHHhhcCCCC--------CC-hhhHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRS-----GFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMPV--------RN-VVSWTAII 69 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~-----g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~--------~~-~~t~~~li 69 (86)
.+...|++++|.+.+....+. +..+. ..++..+-..|.+.|++++|...+++..+ +. ..+|..+=
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 243 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 466789999999999998752 22232 33788888999999999999999986531 11 45677888
Q ss_pred HHHhhcCC-hhHhhhcc
Q 043594 70 AAFAQEWE-VDMCYTFI 85 (86)
Q Consensus 70 ~~~~~~g~-~~~a~~~f 85 (86)
..|.+.|+ .++|.+.|
T Consensus 244 ~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 244 ECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHH
Confidence 88999994 68888765
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.011 Score=31.63 Aligned_cols=55 Identities=9% Similarity=-0.094 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...+..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|++++|++.|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3456666678899999999999999764 24 6788999999999999999998865
No 153
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.96 E-value=0.0097 Score=41.28 Aligned_cols=78 Identities=6% Similarity=-0.175 Sum_probs=49.6
Q ss_pred cCCchhHHHHHHHHHHH------HcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCC
Q 043594 8 STRNIRGGTQYQCLAVR------SGFVA-NVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWE 77 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~------~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~ 77 (86)
..|+.++|.+.+....+ ....| +...+..+-..|.+.|++++|.+.|++..+ | +...|..+=..|.+.|+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC
Confidence 45667777777777661 01223 344666666777777777777777776542 3 45566666677777777
Q ss_pred hhHhhhcc
Q 043594 78 VDMCYTFI 85 (86)
Q Consensus 78 ~~~a~~~f 85 (86)
+++|.+.|
T Consensus 483 ~~~A~~~~ 490 (681)
T 2pzi_A 483 YDSATKHF 490 (681)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 154
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.93 E-value=0.022 Score=29.57 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
++..+..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|++++|.+.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56678888899999999999999999875 34 5678999999999999999999876
No 155
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.92 E-value=0.0057 Score=31.32 Aligned_cols=53 Identities=8% Similarity=-0.091 Sum_probs=43.6
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVY-VGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+.+.|++++|.+.+....+.. ..+.. .+..+-..|.+.|++++|.+.|++..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456799999999999998864 23455 78888889999999999999999764
No 156
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.91 E-value=0.0066 Score=36.53 Aligned_cols=79 Identities=6% Similarity=-0.070 Sum_probs=61.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch----HHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC----hhhHHHHHHHHhh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN----VYVGSSLISFCGKCGENIDVYKMFEKMPV--RN----VVSWTAIIAAFAQ 74 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~t~~~li~~~~~ 74 (86)
.+-+.|++++|.+.+..+.+.. |+ ...+..+-..|.+.|++++|...|++... |+ ..+|..+-..|.+
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~ 101 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK 101 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence 3456899999999999998764 32 56777788889999999999999998742 42 3456666677877
Q ss_pred --------cCChhHhhhcc
Q 043594 75 --------EWEVDMCYTFI 85 (86)
Q Consensus 75 --------~g~~~~a~~~f 85 (86)
.|++++|.+.|
T Consensus 102 ~~~~~~~~~~~~~~A~~~~ 120 (261)
T 3qky_A 102 LSPPYELDQTDTRKAIEAF 120 (261)
T ss_dssp HCCCTTSCCHHHHHHHHHH
T ss_pred hcccccccchhHHHHHHHH
Confidence 89999998876
No 157
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.90 E-value=0.0057 Score=33.42 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.+...=..|.+.|++++|.+.|++.. .| +..+|..+-..|.+.|++++|++.|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 70 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHH
Confidence 45555567899999999999999864 34 6788999999999999999999865
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.89 E-value=0.0077 Score=38.11 Aligned_cols=78 Identities=13% Similarity=-0.075 Sum_probs=45.5
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-CC----hhhHHHHHHHHhhcCChhH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RN----VVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~----~~t~~~li~~~~~~g~~~~ 80 (86)
+...|++++|.+++..+...+ |+....-.+-..|.+.+++++|...|++... |+ ...+..+=.++.+.|++++
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~e 189 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTE 189 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHH
Confidence 445677777777777665533 4433444444466667777777777765432 21 1234444456677777777
Q ss_pred hhhcc
Q 043594 81 CYTFI 85 (86)
Q Consensus 81 a~~~f 85 (86)
|++.|
T Consensus 190 Al~~l 194 (282)
T 4f3v_A 190 AERRL 194 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.87 E-value=0.013 Score=32.26 Aligned_cols=54 Identities=11% Similarity=-0.109 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..+..+-..+.+.|++++|...|++.. .| +...|..+-..|.+.|++++|.+.|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345556677889999999999999864 34 6778888889999999999998876
No 160
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.85 E-value=0.01 Score=35.20 Aligned_cols=54 Identities=11% Similarity=-0.176 Sum_probs=43.0
Q ss_pred chhcCCchhHHHHHHHHHHHHcC-Cc-hHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGF-VA-NVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~-~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+.+.|++++|.+.+..+.+..= .| ....+..+-..|.+.|++++|...|++..
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34567999999999999988631 11 23567778889999999999999999875
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.82 E-value=0.014 Score=31.76 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.+.-+=..|.+.|++++|.+.|++.. .| +..+|+.+=..|.+.|++++|++.|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 44445567889999999999999764 34 6778999999999999999998765
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.81 E-value=0.022 Score=36.11 Aligned_cols=77 Identities=9% Similarity=-0.190 Sum_probs=64.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
++.+.|++++|.+.+....+.. +.+...+..+-..|.+.|++++|...|++.. .| +...|..+-..+.+.|+.++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998874 3467788889999999999999999999764 34 567888888899999988887
Q ss_pred h
Q 043594 82 Y 82 (86)
Q Consensus 82 ~ 82 (86)
.
T Consensus 284 ~ 284 (336)
T 1p5q_A 284 E 284 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 163
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.76 E-value=0.031 Score=29.59 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=52.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----CChhhHHHHHHHHhh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-----RNVVSWTAIIAAFAQ 74 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~t~~~li~~~~~ 74 (86)
.+.+.|++++|.+.+....+.. +-+..++..+-..|.+.|++++|...|++... |++..|...|..|.+
T Consensus 36 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 36 TFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 4567899999999999998875 23466888888999999999999999987642 344455555555544
No 164
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=95.73 E-value=0.099 Score=28.52 Aligned_cols=57 Identities=12% Similarity=0.034 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHH
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIA 70 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~ 70 (86)
-++|.-|-+-+...+- ...+-=+-++.....|++++|..+.+..+.||+..|-.|-.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce 79 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE 79 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH
Confidence 3456556555555554 44454555678889999999999999999999999988754
No 165
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.68 E-value=0.0099 Score=41.25 Aligned_cols=74 Identities=9% Similarity=-0.159 Sum_probs=41.3
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~ 80 (86)
+.+.|++++|.+.+....+.. .-+...+..+=..|.+.|++++|.+.|++.. .| +...|..+-..|.+.|++++
T Consensus 443 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 443 LLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred HHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence 345566777777777666643 2234456666666666777777777666542 12 33444444444545554444
No 166
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=95.64 E-value=0.095 Score=28.55 Aligned_cols=65 Identities=12% Similarity=-0.041 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhH
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~ 80 (86)
-++|.-|-+-+...+- ...+-=+-++.....|++++|..+.+..+.||+.+|-.|-. .|.|.-++
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~ 86 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAA 86 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHH
Confidence 3456556555555554 44454555678889999999999999999999999988754 24444443
No 167
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.63 E-value=0.051 Score=33.51 Aligned_cols=60 Identities=3% Similarity=-0.129 Sum_probs=49.8
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhccC
Q 043594 27 FVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 27 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
...+...+-.+-..+.+.|++++|...|++.. .| +...+..+-..|.+.|+.++|.+.|+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45556677777788899999999999999874 35 56788999999999999999998764
No 168
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.52 E-value=0.024 Score=33.42 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHh----cCChHHHHHhhcCCCCCC-----hhhHHHHHHHHhh----cCC
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK----CGENIDVYKMFEKMPVRN-----VVSWTAIIAAFAQ----EWE 77 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~-----~~t~~~li~~~~~----~g~ 77 (86)
+.++|.+.+....+.| ++..+..|=..|.. .+++++|.+.|++..+.+ ..++..|=..|.+ .++
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 4555555555554443 23344444444444 455555555555544321 3555555555555 555
Q ss_pred hhHhhhcc
Q 043594 78 VDMCYTFI 85 (86)
Q Consensus 78 ~~~a~~~f 85 (86)
.++|++.|
T Consensus 145 ~~~A~~~~ 152 (212)
T 3rjv_A 145 DVKASEYF 152 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 169
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.49 E-value=0.021 Score=35.89 Aligned_cols=81 Identities=5% Similarity=-0.124 Sum_probs=60.5
Q ss_pred chhcCCchhHHHHHHHHHHHHc----CC--c-hHHHHHHHHHHHHhcCChHHHHHhhcCCC----C---C-ChhhHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSG----FV--A-NVYVGSSLISFCGKCGENIDVYKMFEKMP----V---R-NVVSWTAII 69 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g----~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~---~-~~~t~~~li 69 (86)
.+...|++++|.+.+.+..+.. .. | ....+..+-..|...|++++|...+++.. . + ...+|..+-
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 3456799999999998886642 21 3 34566677788999999999999998642 1 1 234677788
Q ss_pred HHHhhcCChhHhhhcc
Q 043594 70 AAFAQEWEVDMCYTFI 85 (86)
Q Consensus 70 ~~~~~~g~~~~a~~~f 85 (86)
..+...|++++|.+.+
T Consensus 182 ~~~~~~g~~~~A~~~l 197 (373)
T 1hz4_A 182 QCSLARGDLDNARSQL 197 (373)
T ss_dssp HHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 8899999999998765
No 170
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.44 E-value=0.037 Score=35.07 Aligned_cols=51 Identities=12% Similarity=-0.043 Sum_probs=24.7
Q ss_pred hhcCCchhHHHHHHHHHHHH----cC-CchHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 6 CGSTRNIRGGTQYQCLAVRS----GF-VANVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
+...|++++|.+.+....+. +. .....++..+-..|.+.|++++|...|++
T Consensus 234 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 234 KNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33445555555555554442 22 33344555555555555555555555443
No 171
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.36 E-value=0.084 Score=33.11 Aligned_cols=80 Identities=6% Similarity=-0.083 Sum_probs=55.6
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCch-HHHHH-----HHHHHHHhcCChHHHHHhhcCCCCCC-------hhhHHHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVAN-VYVGS-----SLISFCGKCGENIDVYKMFEKMPVRN-------VVSWTAIIAAF 72 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~-----~li~~y~~~g~~~~A~~~~~~m~~~~-------~~t~~~li~~~ 72 (86)
+...|++++|.+.+.+..+..-.++ ...+. .....+...|++++|...+++...++ ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 4457889999999998876532221 11121 23345778999999999998875432 22466777889
Q ss_pred hhcCChhHhhhcc
Q 043594 73 AQEWEVDMCYTFI 85 (86)
Q Consensus 73 ~~~g~~~~a~~~f 85 (86)
...|+.++|.+.+
T Consensus 264 ~~~g~~~~A~~~l 276 (373)
T 1hz4_A 264 ILLGEFEPAEIVL 276 (373)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 9999999998765
No 172
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.32 E-value=0.051 Score=28.46 Aligned_cols=69 Identities=6% Similarity=-0.083 Sum_probs=51.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-----CChhhHHHHHHHHhh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-----RNVVSWTAIIAAFAQ 74 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~t~~~li~~~~~ 74 (86)
.+...|++++|.+.+....+.. ..+...+..+-..|.+.|++++|...|++..+ ++......+...+.+
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 28 TYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4567899999999999998865 33466888888999999999999999997642 344444444444433
No 173
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=95.30 E-value=0.056 Score=30.63 Aligned_cols=54 Identities=4% Similarity=-0.176 Sum_probs=43.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
.+.+.|++++|...+....+.. +.+...+..+-..|.+.|++++|...|++...
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 3557899999999999886643 23566788888999999999999999999864
No 174
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.13 E-value=0.02 Score=38.64 Aligned_cols=83 Identities=7% Similarity=-0.236 Sum_probs=60.6
Q ss_pred hcchhcCCchhHHHHHHHHHHHH-----c-CCch-HHHHHHHHHHHHhcCChHHHHHhhcCCC----------CCChh-h
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRS-----G-FVAN-VYVGSSLISFCGKCGENIDVYKMFEKMP----------VRNVV-S 64 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~----------~~~~~-t 64 (86)
-..|...|++++|..++.+..+. | -.|+ ..+++.|-..|...|++++|..++++.. +|++. +
T Consensus 358 a~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 437 (490)
T 3n71_A 358 SEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDL 437 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 34677889999999999988654 2 2333 4588999999999999999999988652 24433 3
Q ss_pred HHHHHHHHhhcCChhHhhhcc
Q 043594 65 WTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 65 ~~~li~~~~~~g~~~~a~~~f 85 (86)
.+.|-..+...|..++|..+|
T Consensus 438 ~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 438 EAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556777777777776554
No 175
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.13 E-value=0.015 Score=34.40 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=57.5
Q ss_pred cCCchhHHHHHHHHHHHHcCCchH-HHHH-----------------HHHHHHHhcCChHHHHHhhcCCC--CCCh----h
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANV-YVGS-----------------SLISFCGKCGENIDVYKMFEKMP--VRNV----V 63 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~-~~~~-----------------~li~~y~~~g~~~~A~~~~~~m~--~~~~----~ 63 (86)
+.|+.++|.+.+..+++.- |+. ..+. .+-..|.+.|++++|...|+++. .|+. .
T Consensus 108 ~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 185 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD 185 (225)
T ss_dssp CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence 3578899999999887752 332 2222 33456888999999999999875 3543 4
Q ss_pred hHHHHHHHHhhcCChhHhhhcc
Q 043594 64 SWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 64 t~~~li~~~~~~g~~~~a~~~f 85 (86)
.+..+...|.+.|+.++|.+.|
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHH
Confidence 6888999999999999998865
No 176
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.89 E-value=0.073 Score=37.40 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C----ChhhHHHHHHHHhhcCChhHhhhc
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R----NVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
+.+.|.++|+..++. +.-+...|...++...+.|+.+.|+.+|+.... | ....|...+.--.+.|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356666666666554 333444555556655556666666666665432 2 224566666666666666555443
No 177
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.81 E-value=0.073 Score=40.80 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
++.+|..+=.++-+.|++++|.+.|.+- .|...|.-++..|.+.|++++|++.|
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777888888888888888888653 46667777888888888888888765
No 178
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=94.81 E-value=0.17 Score=29.65 Aligned_cols=76 Identities=11% Similarity=0.033 Sum_probs=58.1
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC----ChHHHHHhhcCCCCC-ChhhHHHHHHHHhh----cC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG----ENIDVYKMFEKMPVR-NVVSWTAIIAAFAQ----EW 76 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~m~~~-~~~t~~~li~~~~~----~g 76 (86)
+...++.++|.+.+....+.| ++..+..|=..|.. | +.++|.+.|++..++ +..++..|=..|.. .+
T Consensus 28 ~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~ 103 (212)
T 3rjv_A 28 WVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGAT 103 (212)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSC
T ss_pred HhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcc
Confidence 335688999999999988876 45666667777777 6 899999999877554 56677777777776 78
Q ss_pred ChhHhhhcc
Q 043594 77 EVDMCYTFI 85 (86)
Q Consensus 77 ~~~~a~~~f 85 (86)
+.++|++.|
T Consensus 104 d~~~A~~~~ 112 (212)
T 3rjv_A 104 DVAHAITLL 112 (212)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888888766
No 179
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.74 E-value=0.1 Score=40.01 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=28.7
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhh
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMF 54 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 54 (86)
...|.+.|+++++.+.+....+.. +++.+.+.+...|++.+++++..++.
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 345666777777777776554433 44444444666666666666544443
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.73 E-value=0.059 Score=31.01 Aligned_cols=77 Identities=9% Similarity=-0.123 Sum_probs=58.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
++.+.|++++|...+....+.. ..+...+..+-..|...|++++|.+.|++.. .| +...+..+-..+.+.++..++
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999998873 3456788888899999999999999999764 34 556777777777766666555
Q ss_pred h
Q 043594 82 Y 82 (86)
Q Consensus 82 ~ 82 (86)
.
T Consensus 176 ~ 176 (198)
T 2fbn_A 176 D 176 (198)
T ss_dssp -
T ss_pred H
Confidence 4
No 181
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.60 E-value=0.025 Score=28.78 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=39.6
Q ss_pred HHHHHhcCChHHHHHhhcCCC--CC-Chh-hHHHHHHHHhhcCChhHhhhcc
Q 043594 38 ISFCGKCGENIDVYKMFEKMP--VR-NVV-SWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 38 i~~y~~~g~~~~A~~~~~~m~--~~-~~~-t~~~li~~~~~~g~~~~a~~~f 85 (86)
-..|.+.|++++|...|++.. .| +.. .|..+-..|.+.|++++|.+.|
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~ 58 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNY 58 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345778899999999999764 34 456 7888888999999999999876
No 182
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.52 E-value=0.056 Score=34.86 Aligned_cols=82 Identities=2% Similarity=-0.199 Sum_probs=49.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHH--HHHHHHH-HHHhcCChHHHHHhhcCCC-----------------------
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVY--VGSSLIS-FCGKCGENIDVYKMFEKMP----------------------- 58 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~-~y~~~g~~~~A~~~~~~m~----------------------- 58 (86)
.+.+.|++++|.+.|....+....+... ++..+-. .+...|+.++|...|++..
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~ 422 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMR 422 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 4567788999999998887765443322 2222221 2345688888888776431
Q ss_pred ---CC-ChhhHHHHHHHHhhcCChhHhhhccC
Q 043594 59 ---VR-NVVSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 59 ---~~-~~~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
.| +..+|+.|=..|.+.|+.++|++.|+
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 13 56778888888888899998888764
No 183
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.46 E-value=0.17 Score=32.06 Aligned_cols=51 Identities=12% Similarity=-0.053 Sum_probs=27.9
Q ss_pred hhcCCchhHHHHHHHHHHH----HcCCchHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 6 CGSTRNIRGGTQYQCLAVR----SGFVANVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~----~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
+...|++++|.+.+....+ .+.+....++..+-..|.+.|+.++|...+++
T Consensus 232 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 232 YDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445566666665555544 13333355566666666666666666665553
No 184
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.45 E-value=0.032 Score=30.91 Aligned_cols=74 Identities=9% Similarity=-0.143 Sum_probs=43.2
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHh----cCChHHHHHhhcCCCC-CChhhHHHHHHHHhh----cCChh
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGK----CGENIDVYKMFEKMPV-RNVVSWTAIIAAFAQ----EWEVD 79 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~t~~~li~~~~~----~g~~~ 79 (86)
.+.+++|.+.+....+.| ++..+..|=.+|.. .++.++|.+.|++-.+ -+..++..|=..|.+ .++.+
T Consensus 38 g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~ 114 (138)
T 1klx_A 38 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEK 114 (138)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHH
Confidence 344555666666665554 34455555555555 5667777777765433 355556666666666 66777
Q ss_pred Hhhhcc
Q 043594 80 MCYTFI 85 (86)
Q Consensus 80 ~a~~~f 85 (86)
+|.+.|
T Consensus 115 ~A~~~~ 120 (138)
T 1klx_A 115 QAVKTF 120 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.45 E-value=0.15 Score=26.71 Aligned_cols=52 Identities=15% Similarity=-0.082 Sum_probs=43.3
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch----HHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN----VYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+.+.|++++|...+....+.. |+ +..+..+-..|.+.|+.++|...|++..
T Consensus 48 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 48 SYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4557899999999999998864 33 5567778888999999999999999875
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.31 E-value=0.085 Score=34.83 Aligned_cols=77 Identities=14% Similarity=-0.159 Sum_probs=61.2
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a 81 (86)
++.+.|++++|.+.+...++.. ..+...+..+-.+|.+.|++++|...|++..+ | +...|..+-..+.+.|+.+++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998875 33577888888999999999999999997643 4 567788888888888877766
Q ss_pred h
Q 043594 82 Y 82 (86)
Q Consensus 82 ~ 82 (86)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 5
No 187
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.21 E-value=0.2 Score=27.53 Aligned_cols=77 Identities=6% Similarity=0.012 Sum_probs=56.5
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC-CChhhHHHHHHHHhh----cCCh
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV-RNVVSWTAIIAAFAQ----EWEV 78 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~t~~~li~~~~~----~g~~ 78 (86)
.+....++.++|.+.+....+.| .|+.. |=..|...+.+++|.+.|++-.+ -+...+..|=..|.+ .++.
T Consensus 3 ~G~g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 3 GGGTVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCcCCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccH
Confidence 44455677889999999988888 33333 55677777888889999886543 466677777777777 7888
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|++.|
T Consensus 78 ~~A~~~~ 84 (138)
T 1klx_A 78 RKAAQYY 84 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888766
No 188
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.06 E-value=0.061 Score=37.79 Aligned_cols=78 Identities=8% Similarity=0.031 Sum_probs=58.7
Q ss_pred cCCchhHHHHHHHHHHHH-c-CCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHHHhhcCChhHhh
Q 043594 8 STRNIRGGTQYQCLAVRS-G-FVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~-g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+.|.++.|.++|....+. + ..+...+..+.+.... .++.+.|+++|+...+ | +...|...+.-..+.|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 457789999999999886 3 4556666666666432 3569999999997643 3 5567788888888899999999
Q ss_pred hccC
Q 043594 83 TFIV 86 (86)
Q Consensus 83 ~~f~ 86 (86)
.+|+
T Consensus 525 ~lfe 528 (679)
T 4e6h_A 525 SLFE 528 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8873
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.01 E-value=0.17 Score=32.05 Aligned_cols=79 Identities=6% Similarity=-0.160 Sum_probs=45.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C-ChhhHHHHHHH-HhhcCChhH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R-NVVSWTAIIAA-FAQEWEVDM 80 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~t~~~li~~-~~~~g~~~~ 80 (86)
++.+.|++++|...+...++.. ..+...+..+-.+|...|++++|...|++..+ | +...+..|-.. ....+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999998864 33577888899999999999999999998753 4 33444444433 223344444
Q ss_pred hhhc
Q 043594 81 CYTF 84 (86)
Q Consensus 81 a~~~ 84 (86)
+.+.
T Consensus 318 a~~~ 321 (338)
T 2if4_A 318 QKEM 321 (338)
T ss_dssp ----
T ss_pred HHHH
Confidence 4443
No 190
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=93.86 E-value=0.16 Score=33.33 Aligned_cols=14 Identities=7% Similarity=0.033 Sum_probs=5.7
Q ss_pred chhHHHHHHHHHHH
Q 043594 11 NIRGGTQYQCLAVR 24 (86)
Q Consensus 11 ~~~~a~~~~~~m~~ 24 (86)
+.++|.+.+....+
T Consensus 166 d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 166 DYVMAREWYSKAAE 179 (490)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 34444444444433
No 191
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=93.83 E-value=0.081 Score=28.39 Aligned_cols=53 Identities=6% Similarity=-0.170 Sum_probs=43.9
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+...|+.++|...+.+..+.. .-+...+..+-..|.+.|++++|...|++..
T Consensus 60 ~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 60 TQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4557899999999999998865 2245688888899999999999999998754
No 192
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=93.80 E-value=0.067 Score=34.49 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCC-----------CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMP-----------VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~-----------~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
...+||.|=..|...|+.++|.+.|++-. +| ..++|+-+-..|...|+.++|...|
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~ 117 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 35678988889999999999999987531 23 4578999999999999999998765
No 193
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.65 E-value=0.095 Score=32.21 Aligned_cols=56 Identities=4% Similarity=-0.174 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+...+..+-..|.+.|++++|...|++.. .| +...|..+-..|.+.|++++|.+.|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 61 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34566677788899999999999999764 35 6778888999999999999998765
No 194
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.37 E-value=0.18 Score=33.48 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=44.8
Q ss_pred hcchhcCCchhHHHHHHHHHHHH-----c-CCch-HHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRS-----G-FVAN-VYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
-.+|...|++++|..++.+..+. | -.|+ ..+++.|=..|...|++++|..++++.
T Consensus 347 a~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 347 MGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 35677889999999999998654 2 3444 447899999999999999999999864
No 195
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.39 Score=28.39 Aligned_cols=72 Identities=7% Similarity=-0.044 Sum_probs=53.8
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCC-----------Chh-------------
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR-----------NVV------------- 63 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~~------------- 63 (86)
..|+++.|.++-..+ -+...|..|=+...+.|+++-|+++|.+...- |..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g 90 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRE 90 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCc
Confidence 568899998887655 46779999999999999999999999987531 111
Q ss_pred hHHHHHHHHhhcCChhHhhhcc
Q 043594 64 SWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 64 t~~~li~~~~~~g~~~~a~~~f 85 (86)
-+|.-...+.-.|+++++.++|
T Consensus 91 ~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 91 DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHH
Confidence 1455566666777777777665
No 196
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=93.10 E-value=0.27 Score=32.25 Aligned_cols=7 Identities=0% Similarity=-0.163 Sum_probs=2.6
Q ss_pred CChhHhh
Q 043594 76 WEVDMCY 82 (86)
Q Consensus 76 g~~~~a~ 82 (86)
++.++|+
T Consensus 201 ~~~~~A~ 207 (490)
T 2xm6_A 201 RNDAISA 207 (490)
T ss_dssp CCHHHHH
T ss_pred cCHHHHH
Confidence 3333333
No 197
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.09 E-value=0.47 Score=31.83 Aligned_cols=71 Identities=7% Similarity=0.117 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhh
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+.+.|..+|+...+.- .-++..+...++...+.|+.+.|+.+|+... .....|...+.-=.+.|+.+.+.+
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3555555555554432 1112233444555555555555555555542 234445555544444455544443
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.67 E-value=0.21 Score=32.20 Aligned_cols=78 Identities=6% Similarity=-0.158 Sum_probs=61.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a 81 (86)
++.+.|++++|.+.+....+.. ..+...+..+-.+|.+.|++++|.+.|++.. .| +...+..+-..+.+.++.+++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999998753 2356688888899999999999999999764 34 566777777778877777776
Q ss_pred hh
Q 043594 82 YT 83 (86)
Q Consensus 82 ~~ 83 (86)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.59 Score=29.68 Aligned_cols=78 Identities=5% Similarity=-0.068 Sum_probs=58.3
Q ss_pred cCCchhHHHHHHHHHHHH----cCC-chHHHHHHHHHHHHhcCChHHHHHhhcCCC--------CCC-hhhHHHHHHHHh
Q 043594 8 STRNIRGGTQYQCLAVRS----GFV-ANVYVGSSLISFCGKCGENIDVYKMFEKMP--------VRN-VVSWTAIIAAFA 73 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--------~~~-~~t~~~li~~~~ 73 (86)
..|+.+++.+++...... +-. .-..++..+...|...|++++|..++++.. .|. +.+|..+...|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 356777888877776542 222 235678889999999999999999888642 222 457888999999
Q ss_pred hcCChhHhhhcc
Q 043594 74 QEWEVDMCYTFI 85 (86)
Q Consensus 74 ~~g~~~~a~~~f 85 (86)
..|++++|..++
T Consensus 187 ~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 187 KLRNLAKSKASL 198 (434)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhCcHHHHHHHH
Confidence 999999998765
No 200
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.81 E-value=0.39 Score=26.50 Aligned_cols=57 Identities=2% Similarity=-0.189 Sum_probs=46.5
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNV 62 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~ 62 (86)
++.+.|++++|...+...++.. +.++..|..+-.+|...|++++|...|++.. .|+.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 4557899999999999998874 3456788888899999999999999999764 3543
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.70 E-value=0.31 Score=32.25 Aligned_cols=55 Identities=7% Similarity=-0.096 Sum_probs=44.1
Q ss_pred hcchhcCCchhHHHHHHHHHHHH-----c-CCch-HHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRS-----G-FVAN-VYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
..+|...|++++|..++.+..+. | -.|+ ..+++.|-..|...|++++|..++++.
T Consensus 336 ~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 336 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35677889999999999988654 2 3343 447888999999999999999998865
No 202
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=91.55 E-value=0.6 Score=29.46 Aligned_cols=51 Identities=8% Similarity=-0.005 Sum_probs=40.4
Q ss_pred HHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhhccC
Q 043594 36 SLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 36 ~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
.....+...|++++|.++|+... .|+-...-.+-..+.+.|++++|+..|+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566788899999999999986 4644466666668999999999998763
No 203
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.46 E-value=0.82 Score=23.75 Aligned_cols=56 Identities=13% Similarity=-0.038 Sum_probs=44.4
Q ss_pred hhcCCchhHHHHHHHHHHHHc------CCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSG------FVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRN 61 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~ 61 (86)
+-+.+++.+|..-+....+.- -.+...++..|-.+|.+.|++++|...+++.. .|+
T Consensus 15 ~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 15 AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 446788999999888886642 23467788999999999999999999999764 354
No 204
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.27 E-value=0.39 Score=27.84 Aligned_cols=56 Identities=4% Similarity=-0.078 Sum_probs=36.9
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
|+.....|.-++..++...+.. +-+|++...-.+-++|.+-|+..+|.+++.+.++
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444556666777777776544 4466677777777788888888887777776543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=90.84 E-value=0.078 Score=30.79 Aligned_cols=80 Identities=10% Similarity=-0.098 Sum_probs=57.6
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh----------HHHHHhhcCCC--CC-ChhhHHHHHHHH
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN----------IDVYKMFEKMP--VR-NVVSWTAIIAAF 72 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~----------~~A~~~~~~m~--~~-~~~t~~~li~~~ 72 (86)
..+.+.+++|.+.+....+.. ..+...|+.+=..+...|++ ++|...|++.. .| +..+|..+=.+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 345567888888888888765 23555666666666666654 58999888764 35 567888888888
Q ss_pred hhcC-----------ChhHhhhccC
Q 043594 73 AQEW-----------EVDMCYTFIV 86 (86)
Q Consensus 73 ~~~g-----------~~~~a~~~f~ 86 (86)
.+.| ++++|++.|+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHH
Confidence 8764 8999988763
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.32 E-value=0.62 Score=32.12 Aligned_cols=44 Identities=5% Similarity=-0.228 Sum_probs=31.1
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.|++++|.++.. .-.+...|..+-..+.+.|+++.|.++|.++.
T Consensus 665 ~~~~~~A~~~~~------~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 665 VGQLTLARDLLT------DESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HTCHHHHHHHHT------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH------hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345555544432 22456788888888999999999999888775
No 207
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=90.24 E-value=1.9 Score=28.22 Aligned_cols=72 Identities=10% Similarity=-0.025 Sum_probs=39.0
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC-----ChHHHHHhhcCCCCC-ChhhHHHHHHHHhh----cCCh
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG-----ENIDVYKMFEKMPVR-NVVSWTAIIAAFAQ----EWEV 78 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g-----~~~~A~~~~~~m~~~-~~~t~~~li~~~~~----~g~~ 78 (86)
.++.++|.+.+....+.| ++..+..|=.+|. .| +.++|...|++-. | +...+..|=..|.+ ..+.
T Consensus 264 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCH
Confidence 556666666666666655 3344444444444 34 6677777776655 4 33444444444443 2266
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
++|++.|
T Consensus 339 ~~A~~~~ 345 (452)
T 3e4b_A 339 QKALDHL 345 (452)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.12 E-value=0.92 Score=23.57 Aligned_cols=56 Identities=11% Similarity=-0.038 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCC----------CCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMP----------VRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~----------~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
++.-+-.|=..+.+.|+++.|...|++.. .+....+..|-.+|.+.|+.++|...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34445556677888899999998887642 123557888899999999999998765
No 209
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.89 E-value=0.59 Score=29.66 Aligned_cols=81 Identities=5% Similarity=-0.145 Sum_probs=59.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCC----c-hHHHHHHHHHHHHhcCChHHHHHhhcCCC-------CC-C--hhhHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFV----A-NVYVGSSLISFCGKCGENIDVYKMFEKMP-------VR-N--VVSWTAII 69 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~----~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~-~--~~t~~~li 69 (86)
.+...|++++|..++....+.-.. + ...++..+...|...|++++|...+++.. .| . ...+..+.
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 455678999999999988664221 2 24588888999999999999999987642 22 1 24566677
Q ss_pred HHHhhcCChhHhhhcc
Q 043594 70 AAFAQEWEVDMCYTFI 85 (86)
Q Consensus 70 ~~~~~~g~~~~a~~~f 85 (86)
..+...|++++|...|
T Consensus 224 ~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHH
Confidence 7788889999887654
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.88 E-value=1.2 Score=23.02 Aligned_cols=48 Identities=4% Similarity=-0.275 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHcCCchH-HHHHHHHHHHHhcCChHHHHHhhcCCCC--CC
Q 043594 12 IRGGTQYQCLAVRSGFVANV-YVGSSLISFCGKCGENIDVYKMFEKMPV--RN 61 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~ 61 (86)
.++|.+++.+..+.. |+. .....+=..+.+.|++++|...|+++.+ |+
T Consensus 25 ~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 688999998888854 544 4455555788899999999999998753 55
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.80 E-value=0.32 Score=28.07 Aligned_cols=46 Identities=17% Similarity=0.041 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 11 NIRGGTQYQCLAVRSGFVA---NVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
++++|..++....+.. .| -...|+.-+ +|.+.|++++|++.++...
T Consensus 50 ~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv-~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKG-SKEEQRDYVFYLAV-GNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH-HHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CccchHHHHHHHHH-HHHHccCHHHHHHHHHHHH
Confidence 5556666666666654 22 222344333 3466677777776666553
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=88.89 E-value=0.67 Score=30.48 Aligned_cols=58 Identities=3% Similarity=-0.145 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 28 VANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 28 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..++.++.++-..+...|++++|...+++.. .|+...|..+=..+.-.|+.++|.+.|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5567777777666777788888888888765 366555655556678888888887765
No 213
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.80 E-value=1 Score=29.29 Aligned_cols=51 Identities=6% Similarity=-0.136 Sum_probs=30.7
Q ss_pred hhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
+...|+..++......+... -..+...+..+|.+|.++|+..+|.+.|++.
T Consensus 181 ~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 181 EIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33456666666555555433 2345566777777777777777777666654
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.76 E-value=0.76 Score=23.75 Aligned_cols=56 Identities=7% Similarity=-0.086 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHhcCC---hHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGE---NIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~---~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
|+-.+..+-.++...++ .++|..+|++.. .| ++.++..+=..+.+.|++++|++.|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44455555555543333 699999999765 35 5566666668899999999999876
No 215
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=88.45 E-value=1.3 Score=29.00 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=6.0
Q ss_pred cCChHHHHHhhcC
Q 043594 44 CGENIDVYKMFEK 56 (86)
Q Consensus 44 ~g~~~~A~~~~~~ 56 (86)
.|+.++|.+.|++
T Consensus 264 ~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 264 LGDVEQMMKYLDN 276 (452)
T ss_dssp GCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4444444444443
No 216
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=87.88 E-value=0.31 Score=28.27 Aligned_cols=53 Identities=11% Similarity=-0.063 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCC--CC--------h-----hhHHHHHHHHhhcCChhHhhhcc
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPV--RN--------V-----VSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~~--------~-----~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.+...=..+.+.|++++|.+.|++..+ |+ . ..|+-+=.++.+.|++++|+..|
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~ 80 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA 80 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 334444567889999999999997642 33 2 28999999999999999998765
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=86.66 E-value=1.5 Score=28.78 Aligned_cols=55 Identities=7% Similarity=-0.145 Sum_probs=44.7
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC--CCChhhH
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP--VRNVVSW 65 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~t~ 65 (86)
.|++++|.+.+++....+ |+...|..+=..+.-.|+.++|.+.|++-- .|...||
T Consensus 290 ~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp HTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 599999999999999987 787777666677888999999999998653 4555444
No 218
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.44 E-value=0.8 Score=29.85 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhccC
Q 043594 35 SSLISFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFIV 86 (86)
Q Consensus 35 ~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f~ 86 (86)
..++..+...|+.++|........ .| +...|-.+|.++.+.|+..+|++.|+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~ 229 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR 229 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 346677788999999988777654 34 67789999999999999999998763
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.06 E-value=1.5 Score=30.24 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=36.9
Q ss_pred HHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 39 SFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 39 ~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+.+..+|++++|.++.+.+. +...|..|-..+.+.|+++.|.+.|
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y 704 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAF 704 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHH
Confidence 44567888888888888765 4678999999999999999998876
No 220
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=85.29 E-value=0.99 Score=30.27 Aligned_cols=76 Identities=9% Similarity=0.125 Sum_probs=49.4
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CC-hhhHHHHHHHHhhcCChhHhhhcc
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--RN-VVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
.+.++.|.++++.....+..++..+..+.+.... .++.+.|+.+|+...+ |+ ...|...++-..+.|+.+.|..+|
T Consensus 299 ~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 299 KRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4568889999998821222333444445555433 2369999999986532 32 344677777778889999888776
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=83.07 E-value=3.3 Score=26.54 Aligned_cols=72 Identities=11% Similarity=-0.000 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHcCCch---HHHHHHHHHHHHh-----cCChHHHHHhhcCCC--CC--ChhhHHHHHHHHhhc-CCh
Q 043594 12 IRGGTQYQCLAVRSGFVAN---VYVGSSLISFCGK-----CGENIDVYKMFEKMP--VR--NVVSWTAIIAAFAQE-WEV 78 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~y~~-----~g~~~~A~~~~~~m~--~~--~~~t~~~li~~~~~~-g~~ 78 (86)
..+++.+.++..+ +.|+ ...|..|-..|.+ .|+.++|++.|++-. .| ++.++...-..+++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3344444444444 4455 5688889899999 599999999999764 35 477788888888885 888
Q ss_pred hHhhhcc
Q 043594 79 DMCYTFI 85 (86)
Q Consensus 79 ~~a~~~f 85 (86)
+++.+.+
T Consensus 257 ~~a~~~L 263 (301)
T 3u64_A 257 AGFDEAL 263 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 222
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.22 E-value=4.1 Score=29.27 Aligned_cols=49 Identities=10% Similarity=-0.070 Sum_probs=39.6
Q ss_pred cCCchhHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 8 STRNIRGGTQYQCLAVRSGFVAN-VYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
+.|+++.|.++-.+.+.. .|+ -.+|-.|...|.+.|+++.|.-.++.+|
T Consensus 349 ~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 349 NRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 467888888888776654 354 5599999999999999999999999885
No 223
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.67 E-value=4.6 Score=21.93 Aligned_cols=57 Identities=9% Similarity=0.065 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC---CChhhHHHHHH
Q 043594 14 GGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV---RNVVSWTAIIA 70 (86)
Q Consensus 14 ~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~t~~~li~ 70 (86)
+..+-+..+....+-|++.+..+.+.++-|-.++.-|..+|+.++. +...+|.-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 4555566666677899999999999999999999999999997752 33445666654
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.38 E-value=7.2 Score=22.71 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=44.4
Q ss_pred CchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcC---CCCCChhhHHHHHHH
Q 043594 10 RNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK---MPVRNVVSWTAIIAA 71 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---m~~~~~~t~~~li~~ 71 (86)
++++.|.++|..+++.+ +-=..+|-.--..=.+.|++..|++++.. |..++.....+.|.-
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 78999999999998863 22267777766777789999999999985 444445555555543
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=76.58 E-value=7.4 Score=22.28 Aligned_cols=82 Identities=5% Similarity=-0.108 Sum_probs=58.1
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC---ChHHHHHhhcCCCC---C--ChhhHHHHHHHHhh
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG---ENIDVYKMFEKMPV---R--NVVSWTAIIAAFAQ 74 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~~---~--~~~t~~~li~~~~~ 74 (86)
|+..-....+..+++-|....+.|- ++.-+.-.+--+++++. +++++..+|++... | +...+--|=-+|.+
T Consensus 5 l~~~l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 5 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp CSCSCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Confidence 4444455667788888888877765 56666666666788888 66789888887642 3 23344455667899
Q ss_pred cCChhHhhhcc
Q 043594 75 EWEVDMCYTFI 85 (86)
Q Consensus 75 ~g~~~~a~~~f 85 (86)
.|+.++|.+.|
T Consensus 84 l~~Y~~A~~y~ 94 (152)
T 1pc2_A 84 LKEYEKALKYV 94 (152)
T ss_dssp TSCHHHHHHHH
T ss_pred ccCHHHHHHHH
Confidence 99999999876
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=72.28 E-value=3.9 Score=24.11 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=36.4
Q ss_pred HHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 40 FCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 40 ~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
-...+|+++.|.++-+++. +...|..|=....+.|+++-|.+.|
T Consensus 14 LAL~lg~l~~A~e~a~~l~--~~~~Wk~Lg~~AL~~gn~~lAe~cy 57 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN--DSITWERLIQEALAQGNASLAEMIY 57 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC--CHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4567899999999987653 5778999999999999998888765
No 227
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=72.06 E-value=3.4 Score=22.83 Aligned_cols=41 Identities=7% Similarity=-0.024 Sum_probs=20.2
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC 44 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~ 44 (86)
|+-|-..|+.++|.+-++++....+ ...++..++..+.=+.
T Consensus 14 l~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~ 54 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLEST 54 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCC
Confidence 4445556666666666666543322 2233444444444443
No 228
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=72.05 E-value=6 Score=18.73 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC--hHHHHHhhcCCCCCC
Q 043594 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGE--NIDVYKMFEKMPVRN 61 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~--~~~A~~~~~~m~~~~ 61 (86)
+.-.|.+..++..||.++-..+ +..+.|. ++.|.+.+.+|..|+
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~-----Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGR-----ALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHH-----HHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred hhHHHHHHHHHHcCCCHHHHHH-----HHHHhCcccHHHHHHHHHHhcCCC
Confidence 4556778889999998864333 4455555 999999999988765
No 229
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=71.62 E-value=16 Score=22.98 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHH-HHHhhcCCCC------CChhhHHHHHHHHhhcCChhHhhhc
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENID-VYKMFEKMPV------RNVVSWTAIIAAFAQEWEVDMCYTF 84 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~m~~------~~~~t~~~li~~~~~~g~~~~a~~~ 84 (86)
++++.+....++... .-|...|+-+-..+.+.|+..+ +.++.++..+ ++...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 667777777777764 3467788888888888887444 4456655432 3667888999999999999999887
Q ss_pred c
Q 043594 85 I 85 (86)
Q Consensus 85 f 85 (86)
+
T Consensus 281 ~ 281 (306)
T 3dra_A 281 Y 281 (306)
T ss_dssp H
T ss_pred H
Confidence 6
No 230
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=70.17 E-value=4.2 Score=21.29 Aligned_cols=64 Identities=6% Similarity=0.036 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhh
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
.++.++...|+-.. .-...+-. .....+.+.|+++++.++.+....|.+++++....|+.+-|-
T Consensus 25 ~vld~L~~~~vlt~-~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELFRP-HMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSSCH-HHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCCCH-HHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46667777664322 22222211 101257899999999999999999999999998878776553
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=69.16 E-value=2.8 Score=30.11 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=38.6
Q ss_pred HHHHhcCChHHHHHhhcCCC--CC-ChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 39 SFCGKCGENIDVYKMFEKMP--VR-NVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 39 ~~y~~~g~~~~A~~~~~~m~--~~-~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+.+-+.|+++-|.++-++-. .| +-.||-.|...|.+.|+++.|+-.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 44556799999999888754 35 5789999999999999999998543
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=68.92 E-value=1.2 Score=31.00 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=47.7
Q ss_pred hcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhh
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
+.++.++|.+++-...+...++. .-++.+=+.|+-+|+|.+++.+-++++.. ||+.--..+=+-|...|..+.|.
T Consensus 90 i~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAK 164 (624)
T 3lvg_A 90 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAK 164 (624)
T ss_dssp HHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHH
Confidence 44555666666665555544333 34566777888888888887765555544 55544445556666666666665
Q ss_pred hcc
Q 043594 83 TFI 85 (86)
Q Consensus 83 ~~f 85 (86)
-+|
T Consensus 165 ily 167 (624)
T 3lvg_A 165 LLY 167 (624)
T ss_dssp TTG
T ss_pred HHH
Confidence 444
No 233
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=67.18 E-value=27 Score=23.85 Aligned_cols=63 Identities=10% Similarity=0.006 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC-ChHHHHHhhcCCCC--C-ChhhHHHHHHHHhh
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG-ENIDVYKMFEKMPV--R-NVVSWTAIIAAFAQ 74 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~~--~-~~~t~~~li~~~~~ 74 (86)
+++++.+.++.+.+.. .-|...|+-.--...+.| ..+++.+.++++.+ | |..+|+-.-..+.+
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 5688888888888865 235667777666677778 88889999888875 3 66778765555544
No 234
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=66.49 E-value=8.7 Score=21.12 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCCCC---hhhHHHHHHHHhhc
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPVRN---VVSWTAIIAAFAQE 75 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~t~~~li~~~~~~ 75 (86)
..+.+|.=|...|+.++|...++++..|. .++...+..+.=+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~ 54 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLEST 54 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCC
Confidence 45678888999999999999999987652 23344444444444
No 235
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=65.12 E-value=2.7 Score=24.02 Aligned_cols=21 Identities=5% Similarity=-0.130 Sum_probs=11.6
Q ss_pred hcchhcCCchhHHHHHHHHHH
Q 043594 3 VTSCGSTRNIRGGTQYQCLAV 23 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~ 23 (86)
|.-|-..|+.++|.+.+.++.
T Consensus 16 L~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 16 LKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHhC
Confidence 444555566666666555553
No 236
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=64.33 E-value=4.9 Score=25.18 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
--|.|+.-+..+|++..|+++|+.++.
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 457888999999999999999998874
No 237
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=63.28 E-value=13 Score=18.92 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHh
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a 81 (86)
...++.++...|+-.+.- +..+.. .....++|+.+++.++.+....|..++.+..+.|..+-|
T Consensus 24 v~~lld~L~~~~vlt~~~-~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISE-EEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSCHHH-HHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHH-HHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 456777777777533222 222222 367889999999999999999999999999888875544
No 238
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=62.94 E-value=14 Score=21.23 Aligned_cols=59 Identities=5% Similarity=-0.146 Sum_probs=42.7
Q ss_pred chhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhc-----------CChHHHHHhhcCCC--CCChhhHHHHHHH
Q 043594 11 NIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKC-----------GENIDVYKMFEKMP--VRNVVSWTAIIAA 71 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~--~~~~~t~~~li~~ 71 (86)
.+++|...+++.++.. | +...|..+=.+|.+. |++++|.+.|++.. +|+...|.--+..
T Consensus 61 ~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 61 MIQEAITKFEEALLID--PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3668888888888864 4 445777777888776 48999999999775 5776666554443
No 239
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=62.83 E-value=11 Score=21.45 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCCCC---hhhHHHHHHHHhh
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPVRN---VVSWTAIIAAFAQ 74 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~t~~~li~~~~~ 74 (86)
..+.+|.=|...|++++|...++++..|. .++...+..+.=+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~ 55 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLES 55 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 45678888999999999999999987652 2334444444444
No 240
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.81 E-value=19 Score=20.61 Aligned_cols=56 Identities=9% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC---CCChhhHHHHHH
Q 043594 15 GTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP---VRNVVSWTAIIA 70 (86)
Q Consensus 15 a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~t~~~li~ 70 (86)
..+-+..+....+-|++.+..+-+.++-+-.++.-|..+|+.++ .+.-..|.-++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33344444455677888888888888888888888888888664 233344555554
No 241
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.35 E-value=14 Score=21.17 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 13 RGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
+...++|..|...|+-- -...|-.--..+-..|++.+|.++|+.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 126 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQR 126 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44677777777766433 344566666666677888888777764
No 242
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.45 E-value=25 Score=21.15 Aligned_cols=46 Identities=7% Similarity=-0.020 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 11 NIRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
+..+..++|..|...|+-- -...|-.--..+-..|++.+|.++|+.
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3558899999998887543 455777777888889999999999984
No 243
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=59.92 E-value=18 Score=23.14 Aligned_cols=60 Identities=2% Similarity=-0.174 Sum_probs=44.3
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc-CChHHHHHhhcCCCC------CChhhHHHH
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKC-GENIDVYKMFEKMPV------RNVVSWTAI 68 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~m~~------~~~~t~~~l 68 (86)
.|+.++|+++|++.++.+=.-+.-++...-+.+++. |+.++|.+.+++... |+....|++
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 489999999999999976222355666677888885 999999999997532 555445544
No 244
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=59.58 E-value=2.7 Score=29.23 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=33.1
Q ss_pred CCchhHHHHHHHHHHHH-cCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCCC---ChhhHHHHHHHHhhcCChhHh
Q 043594 9 TRNIRGGTQYQCLAVRS-GFVANVYVGSSLISFCGKCGENIDVYKMFEKMPVR---NVVSWTAIIAAFAQEWEVDMC 81 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~t~~~li~~~~~~g~~~~a 81 (86)
..+...+++..+++..+ -+.. .--.--++..|.+-|..+.|+++++.+..+ +...| .-+..|+|+|+++.+
T Consensus 494 ~~~~~~gr~~IselLpr~Pl~T-ndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 494 TGTRSAKKMVIAELLPHYPFVT-NDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SSCHHHHHHHHHHHGGGCCCCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred ccchhHHHHHHHHHhccCCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 34455666666666543 2333 234566778888889999999988877542 34455 556778888887764
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=58.40 E-value=22 Score=20.65 Aligned_cols=55 Identities=9% Similarity=-0.045 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCC-C--CCChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKM-P--VRNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m-~--~~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
..-++.-++.....|+-+.-.++..++ . +|+....-.+-++|.+-|+..+|.+++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 344566677777888888888887774 2 356666667779999999999988764
No 246
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=58.03 E-value=13 Score=20.54 Aligned_cols=47 Identities=9% Similarity=0.039 Sum_probs=31.2
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChH
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI 48 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~ 48 (86)
+|..+...+..-.|.+|++.+.+.+-..+..|.=--|+.+...|-+.
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34555555566778888888887766556655555566677777654
No 247
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=57.39 E-value=10 Score=20.64 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=31.6
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChH
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENI 48 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~ 48 (86)
+|..+...+..-.|.+|++.+.+.+-..+..|.=--|+.+...|-+.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 34455555666788888888888765556665555667777777653
No 248
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=56.88 E-value=43 Score=22.88 Aligned_cols=73 Identities=10% Similarity=0.000 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC--ChHHHHHhhcCCC---CCChhhHHHHHHHHhhcC-ChhHhhhcc
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG--ENIDVYKMFEKMP---VRNVVSWTAIIAAFAQEW-EVDMCYTFI 85 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~---~~~~~t~~~li~~~~~~g-~~~~a~~~f 85 (86)
++++.+.++.+.+.. .-+..+|+----.+.+.| +++++.+.++++. .+|..+|+---....+.| ..+++++.+
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 788888888888754 335567887777778888 6799999999885 357889988777777778 777776653
No 249
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=55.12 E-value=18 Score=17.70 Aligned_cols=58 Identities=5% Similarity=0.130 Sum_probs=32.7
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcC-ChHHHHHhhcCCC----CCChhhHHHHHHHHhhcCCh
Q 043594 20 CLAVRSGFVANVYVGSSLISFCGKCG-ENIDVYKMFEKMP----VRNVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 20 ~~m~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~----~~~~~t~~~li~~~~~~g~~ 78 (86)
..+.+.|++++..- -.++......+ ..-.+.++++.+. ..+..|-.-.+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34666777776654 34555555554 4556666766662 22444545556666666654
No 250
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.77 E-value=32 Score=21.03 Aligned_cols=45 Identities=7% Similarity=0.036 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 12 IRGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
.+...++|..|...|+-- -...|-.--..+-..|++.+|.++|+.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356677888887776533 345666666677777888888888774
No 251
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=54.37 E-value=14 Score=17.66 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHHHHHHc-CCchHH
Q 043594 9 TRNIRGGTQYQCLAVRSG-FVANVY 32 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g-~~~~~~ 32 (86)
.=+++.|.+.|..+...| +.|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 346889999999987654 666654
No 252
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=53.23 E-value=15 Score=20.15 Aligned_cols=36 Identities=6% Similarity=-0.080 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
.-.|.+|++.+.+.+-..+..|.=--|+.+...|-+
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344555555554444333333333333444444433
No 253
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=53.07 E-value=18 Score=17.15 Aligned_cols=43 Identities=12% Similarity=-0.117 Sum_probs=34.1
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGE 46 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~ 46 (86)
..|.+..-.++-..+...=...|-.+....+++..+++..-|.
T Consensus 4 q~Yvs~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLGL 46 (55)
T 1dp3_A 4 QAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGL 46 (55)
T ss_dssp SSCCCCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHTT
T ss_pred eeehhhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhH
Confidence 3455556667777788888888999999999999999988774
No 254
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.99 E-value=31 Score=19.95 Aligned_cols=44 Identities=7% Similarity=-0.114 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 13 RGGTQYQCLAVRSGFVA-NVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
+...++|..|...|+-- -...|-.--..+-..|++.+|.++|+.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44667788887776433 344566666666677888888888773
No 255
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.68 E-value=13 Score=21.35 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=36.3
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHH--HHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVY--VGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
.|...+..|+.+..+.+.+.+.+.|..++.. ...+.+...+..|+.+-...+++.=
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3445566788888888887777777655433 2234455566778888777777643
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=52.49 E-value=47 Score=21.88 Aligned_cols=82 Identities=9% Similarity=-0.065 Sum_probs=50.8
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHhcCChHHHHHhhcCC--------CCCChhhHHHHHH
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVAN-----VYVGSSLISFCGKCGENIDVYKMFEKM--------PVRNVVSWTAIIA 70 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~y~~~g~~~~A~~~~~~m--------~~~~~~t~~~li~ 70 (86)
.-+-..|++.+|.+++..+.+.--..| .-++-.-+.+|...|++.++...+.+- ++|.+..---+.+
T Consensus 107 ~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~ 186 (394)
T 3txn_A 107 ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQS 186 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHh
Confidence 345567899999888888877532222 235666678888889998888777543 2233322222222
Q ss_pred H--Hh-hcCChhHhhhcc
Q 043594 71 A--FA-QEWEVDMCYTFI 85 (86)
Q Consensus 71 ~--~~-~~g~~~~a~~~f 85 (86)
| +. ..+++.+|...|
T Consensus 187 Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 187 GILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHhccCHHHHHHHH
Confidence 2 33 677888877655
No 257
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=52.12 E-value=17 Score=20.28 Aligned_cols=61 Identities=10% Similarity=0.146 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C--ChhhHHHHHHHHhhcCCh
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R--NVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~--~~~t~~~li~~~~~~g~~ 78 (86)
++-..+.+.|++++..= -.+++.....+..-.|.++++.+.+ | +..|----|..+...|-+
T Consensus 13 ~~~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 13 RLRMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34455667777775542 2344555556667788888887742 2 343433345556666554
No 258
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=51.28 E-value=26 Score=18.57 Aligned_cols=46 Identities=9% Similarity=-0.157 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
.+++.+++....... ....+...|+.++-++|+-+-|..+-....+
T Consensus 58 ~eq~~~mL~~W~~~~--g~~AT~~~L~~aL~~i~r~diae~l~~~~~~ 103 (111)
T 2yqf_A 58 LEQSVALLNLWVIRE--GQNANMENLYTALQSIDRGEIVNMLEGSGRQ 103 (111)
T ss_dssp HHHHHHHHHHHHHHH--TTSCCHHHHHHHHHHTTCCHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHhh--CCCchHHHHHHHHHHcCcHHHHHHHHHhccC
Confidence 456666666665542 1234788999999999999999888776544
No 259
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=47.67 E-value=34 Score=18.87 Aligned_cols=46 Identities=15% Similarity=-0.069 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHH-HHHHHHhcCChHHHHHhhcCC
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSS-LISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~~m 57 (86)
+.++..++..+.+.+-..+.+-+-- |--+|.|.|++++|++.++.+
T Consensus 54 ~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 54 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3446666666655431112222211 113566667777777766655
No 260
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.49 E-value=14 Score=20.54 Aligned_cols=60 Identities=7% Similarity=0.010 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCCC--C--ChhhHHHHHHHHhhcCCh
Q 043594 18 YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMPV--R--NVVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 18 ~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~--~~~t~~~li~~~~~~g~~ 78 (86)
+-..+.+.|++++..=. .+++.....+..-.|.++++.+.+ | +..|----|..+...|-+
T Consensus 9 ~~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 9 ALETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34456777877765432 344555556667788888887743 3 334433345666666654
No 261
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=45.55 E-value=30 Score=17.71 Aligned_cols=23 Identities=22% Similarity=0.606 Sum_probs=14.5
Q ss_pred HhhcCCCC--CChhhHHHHHHHHhh
Q 043594 52 KMFEKMPV--RNVVSWTAIIAAFAQ 74 (86)
Q Consensus 52 ~~~~~m~~--~~~~t~~~li~~~~~ 74 (86)
.++++++. |++-||+-+..-+-+
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTT
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHc
Confidence 45666663 688888876654433
No 262
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.36 E-value=1.6 Score=28.07 Aligned_cols=26 Identities=4% Similarity=0.051 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCChHHHHHhhcCCCCC
Q 043594 35 SSLISFCGKCGENIDVYKMFEKMPVR 60 (86)
Q Consensus 35 ~~li~~y~~~g~~~~A~~~~~~m~~~ 60 (86)
+.++.=|...|++++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34445555555555555555555433
No 263
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=44.90 E-value=27 Score=19.84 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 18 YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 18 ~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
+-+.+.+.|++++.. =-++++.....+..-.|.++++.+.
T Consensus 20 ~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~ 59 (162)
T 4ets_A 20 FKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIK 59 (162)
T ss_dssp HHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 334446677777543 3455566666667777888877663
No 264
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.59 E-value=33 Score=19.09 Aligned_cols=36 Identities=6% Similarity=-0.087 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
.-.|.+|++.+.+.+-..+..|.=--|+.+...|-+
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 334455555554443333333333333444444433
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.74 E-value=9 Score=25.22 Aligned_cols=51 Identities=10% Similarity=-0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCC----C--ChhhHHHHHHHHhhcCChhHhhh
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPV----R--NVVSWTAIIAAFAQEWEVDMCYT 83 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~----~--~~~t~~~li~~~~~~g~~~~a~~ 83 (86)
+...+-+.|.++|++++|.+.|.++.+ + -+..|-.+|..+...+++..+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 556677778888888888888877642 1 23345666677777777766654
No 266
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=42.47 E-value=23 Score=23.04 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCCCC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPVRN 61 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 61 (86)
...++|.=|...|++++|...++++..|+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 45677777888888888888888877664
No 267
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.21 E-value=50 Score=20.06 Aligned_cols=83 Identities=6% Similarity=-0.075 Sum_probs=43.1
Q ss_pred hcchhcCCchhHHHHHHHHHHHH--cCCc----hHHHHHHHHHHHHhcCChHHHHHhhcCCC-CCChhhHHHHHHHHhhc
Q 043594 3 VTSCGSTRNIRGGTQYQCLAVRS--GFVA----NVYVGSSLISFCGKCGENIDVYKMFEKMP-VRNVVSWTAIIAAFAQE 75 (86)
Q Consensus 3 l~~~~~~~~~~~a~~~~~~m~~~--g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~~~~t~~~li~~~~~~ 75 (86)
|+.+-..+++++|.++.++..+. ++++ +.......+..-.....-.-+..+.++.. .++...-...++...|-
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~~~~r~~v~~L~rL 104 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEIVHLKSGTENMIKL 104 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Confidence 34555667888888888777553 3432 11122222222222222222333333221 23444556667888888
Q ss_pred CChhHhhhcc
Q 043594 76 WEVDMCYTFI 85 (86)
Q Consensus 76 g~~~~a~~~f 85 (86)
|+.++|.++|
T Consensus 105 g~~~~A~~lf 114 (235)
T 2d2s_A 105 GLPEQALDLF 114 (235)
T ss_dssp TCHHHHHHHH
T ss_pred CChhHHHHHH
Confidence 8888888776
No 268
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=41.36 E-value=16 Score=21.06 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCCCC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPVRN 61 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 61 (86)
....+|+=|...|+.++|...++++..|+
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~ 40 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE 40 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 45678888999999999999999987664
No 269
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=40.56 E-value=25 Score=21.89 Aligned_cols=41 Identities=7% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
+++.++.+.|+.|..+++.=++..+++.=.++.+..++|-+
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~ 215 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLL 215 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 57777878888888888777887777766677777777754
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.35 E-value=15 Score=24.00 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCCCC
Q 043594 34 GSSLISFCGKCGENIDVYKMFEKMPVR 60 (86)
Q Consensus 34 ~~~li~~y~~~g~~~~A~~~~~~m~~~ 60 (86)
.+.+|.=|...|+.++|..+++++..|
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p 246 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP 246 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC
Confidence 455666666667777777777666554
No 271
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.76 E-value=14 Score=23.55 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCChHHHHHhhcCCCCC
Q 043594 35 SSLISFCGKCGENIDVYKMFEKMPVR 60 (86)
Q Consensus 35 ~~li~~y~~~g~~~~A~~~~~~m~~~ 60 (86)
+.++.=|...|+.++|.++++++..|
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p 195 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVP 195 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 34555566666666666666666544
No 272
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.50 E-value=28 Score=22.21 Aligned_cols=73 Identities=5% Similarity=0.043 Sum_probs=48.4
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC-ChHHHHHhhcCCCCCChhhHHHHHHHHhhc
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG-ENIDVYKMFEKMPVRNVVSWTAIIAAFAQE 75 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~~~~~~t~~~li~~~~~~ 75 (86)
+|.-|-..|++++|.+.+.++....+. ..++..++..+.=+.. ..+.+-.++..+.+.++.|-..+..||.+-
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~ 90 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEI 90 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 456677789999998888888655443 3445555555554432 234555567766667888888888888664
No 273
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=39.48 E-value=26 Score=22.19 Aligned_cols=40 Identities=5% Similarity=0.099 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcC
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
+++.++.+.|+.|..+++.=++..+++.=.++.+..++|-
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~ 253 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDV 253 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHH
Confidence 3555555666666666555555555555455555555553
No 274
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.63 E-value=36 Score=21.60 Aligned_cols=72 Identities=8% Similarity=0.055 Sum_probs=46.1
Q ss_pred hhcchhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC--hHHHHHhhcCCCCCChhhHHHHHHHHhh
Q 043594 2 PVTSCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGE--NIDVYKMFEKMPVRNVVSWTAIIAAFAQ 74 (86)
Q Consensus 2 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~--~~~A~~~~~~m~~~~~~t~~~li~~~~~ 74 (86)
+|.-|-..|+.++|.+.+.++....+. ..++..++..+.=+.+. .+...+++..+...++.|=+.+..|+.+
T Consensus 172 lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 172 LLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 455666778888888888888654433 34566666666665432 3445566666666677777777777654
No 275
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.05 E-value=60 Score=19.60 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=28.2
Q ss_pred hhcchh---cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 043594 2 PVTSCG---STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG 45 (86)
Q Consensus 2 ll~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g 45 (86)
+|+++- +..+.+-|.-.+.+|++.| .|.-..=..++-+.---|
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 345554 4578999999999999999 665444444444443334
No 276
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=37.21 E-value=44 Score=20.14 Aligned_cols=40 Identities=5% Similarity=-0.114 Sum_probs=27.7
Q ss_pred hhcchh---cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 043594 2 PVTSCG---STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFC 41 (86)
Q Consensus 2 ll~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y 41 (86)
+|+++- +..+.+-|...+.+|++.|-.|.-..=..++-+.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345554 4578999999999999999877544444444443
No 277
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=36.88 E-value=77 Score=19.84 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=5.5
Q ss_pred CChHHHHHhhcCC
Q 043594 45 GENIDVYKMFEKM 57 (86)
Q Consensus 45 g~~~~A~~~~~~m 57 (86)
++++++.++++++
T Consensus 124 ~~~~~EL~~~~~~ 136 (306)
T 3dra_A 124 FDPYREFDILEAM 136 (306)
T ss_dssp CCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3444444444433
No 278
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.80 E-value=50 Score=17.63 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc
Q 043594 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
-.+.+|-++....|+.|+.-+...++..+...+- ++.++.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l--da~e~Ve 66 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ--NEEGMVG 66 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHH
Confidence 3577888999999999999999999998888774 2555433
No 279
>2km6_A Nacht, LRR and PYD domains-containing protein 7; NLRP7, pyrin domain, innate immune system, NALP, ATP-binding mutation, leucine-rich repeat; NMR {Homo sapiens}
Probab=36.29 E-value=11 Score=20.19 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCCCCC
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 61 (86)
.-+.+.|+..|....-++-+..+|++|...|
T Consensus 54 ~dLa~lLv~~y~e~~A~~vt~~if~~mn~~d 84 (106)
T 2km6_A 54 KKLAEILVNTSSENWIRNATVNILEEMNLTE 84 (106)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHcCHHH
Confidence 3466777777887777788888888776544
No 280
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.37 E-value=68 Score=23.93 Aligned_cols=78 Identities=5% Similarity=-0.003 Sum_probs=48.7
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCch----HHHHHHHHHHHHhcCChHHHHHhhcCCCCCC--hhhHHHHHHHHhhcCCh
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVAN----VYVGSSLISFCGKCGENIDVYKMFEKMPVRN--VVSWTAIIAAFAQEWEV 78 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~t~~~li~~~~~~g~~ 78 (86)
-|.+.+..+.+.++-.......-+-+ ...|+.+.+.+..-|++++|...+-.++.+. -.....||...+..|..
T Consensus 908 LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 908 KLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCh
Confidence 34455566666555554444322111 1268888888999999999988887665332 23456677777777776
Q ss_pred hHhh
Q 043594 79 DMCY 82 (86)
Q Consensus 79 ~~a~ 82 (86)
++-+
T Consensus 988 ~~L~ 991 (1139)
T 4fhn_B 988 NQLL 991 (1139)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6543
No 281
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=34.73 E-value=15 Score=18.85 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPVR 60 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 60 (86)
-+.+.|++.|....-++-+..+|++|...
T Consensus 51 dla~lLv~~y~~~~A~~vt~~if~~mn~~ 79 (89)
T 2hm2_Q 51 DLTDKLVASYYEDYAAELVVAVLRDMRML 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHcCHH
Confidence 36777888888888888888888888653
No 282
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.00 E-value=43 Score=22.17 Aligned_cols=81 Identities=7% Similarity=0.026 Sum_probs=56.5
Q ss_pred chhcCCchhHHHHHHHHHHHH--cCCch---HHHHHHHHHHHHhcCChHHHHHhhcCCC--------CCC--hhhHHHHH
Q 043594 5 SCGSTRNIRGGTQYQCLAVRS--GFVAN---VYVGSSLISFCGKCGENIDVYKMFEKMP--------VRN--VVSWTAII 69 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~--------~~~--~~t~~~li 69 (86)
-+-..|++.+|..+...+... |.... ...+--.+..|...+++..|..++..+. .|+ ..-+..++
T Consensus 146 i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~ 225 (445)
T 4b4t_P 146 IKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLV 225 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 344678999999999998654 32222 3466777888999999999998877652 222 23456677
Q ss_pred HHHhhcCChhHhhhcc
Q 043594 70 AAFAQEWEVDMCYTFI 85 (86)
Q Consensus 70 ~~~~~~g~~~~a~~~f 85 (86)
.-+...+++.+|.+.|
T Consensus 226 ~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 226 KISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHCCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHH
Confidence 7777788888776544
No 283
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=32.21 E-value=42 Score=21.22 Aligned_cols=43 Identities=2% Similarity=-0.161 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 16 TQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 16 ~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+++.++.+.|+.|..+++.=++..+++.=.++.+..++|.+-
T Consensus 229 P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l 271 (345)
T 2qfz_A 229 EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQ 271 (345)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 3678888889999999999999999999888999999999764
No 284
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=32.10 E-value=55 Score=16.72 Aligned_cols=41 Identities=10% Similarity=-0.062 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc
Q 043594 13 RGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 13 ~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
+++.+++....... ....|...|+.++-++|+-+-|..+-+
T Consensus 55 eq~~~mL~~W~~~~--g~~At~~~L~~AL~~~~~~~iae~i~~ 95 (99)
T 1fad_A 55 ERVRESLKVWKNAE--KKNASVAGLVKALRTCRLNLVADLVEE 95 (99)
T ss_dssp HHHHHHHHHHHHHH--GGGGSHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCCcHHHHHHHHHHCCcHHHHHHHHH
Confidence 45555555554432 123366777777777777666665543
No 285
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=31.98 E-value=27 Score=22.00 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=16.3
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhc
Q 043594 18 YQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFE 55 (86)
Q Consensus 18 ~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 55 (86)
++.++.+.|+.|..++..=++..+++.=.++.+..++|
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD 247 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFD 247 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHH
Confidence 44444444444444444444444444333444444433
No 286
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=31.96 E-value=97 Score=19.52 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=40.0
Q ss_pred chhcCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 5 SCGSTRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
..-+.|+++++.+-...-+|.. ..|.-.=..++.-+|-.|+++.|.+-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4557888888888777777764 446667777889999999999998866643
No 287
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=31.50 E-value=20 Score=21.38 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=32.4
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
-.++-+.+.++..+....|..|.....+.++.+.-+-|+.
T Consensus 14 ~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~l 53 (215)
T 3ezx_A 14 VNQNVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGDK 53 (215)
T ss_dssp HTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999888888888877665544
No 288
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=31.20 E-value=59 Score=21.21 Aligned_cols=42 Identities=5% Similarity=-0.140 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 16 TQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 16 ~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
.+++.++.+.|+.|..+.+.=++..+++.=.++.+..++|.+
T Consensus 216 P~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~ 257 (396)
T 1fkm_A 216 ADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTY 257 (396)
T ss_dssp HHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 367888888899998888888888888877777777777643
No 289
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.83 E-value=25 Score=19.49 Aligned_cols=36 Identities=3% Similarity=-0.016 Sum_probs=16.9
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 21 LAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 21 ~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+.+.|++++..= -++++.....+ .-.|.++++.+.
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~ 44 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVR 44 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHH
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3445566554431 22233333334 456666666553
No 290
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=30.78 E-value=16 Score=17.31 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHHHcCCchHH
Q 043594 11 NIRGGTQYQCLAVRSGFVANVY 32 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~ 32 (86)
+++.|.+.|... +..++|+.+
T Consensus 34 d~~~A~~~F~~~-~~~IP~eAF 54 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPREAF 54 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHHh
Confidence 567777777775 445666654
No 291
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.92 E-value=91 Score=20.41 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=39.5
Q ss_pred hhcCCchhHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRSG--FVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
+.+.|+.+.|.+++.++.... ...-.-.+=.+|..+...+++..+....++.
T Consensus 141 ~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 141 YAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 457799999999999997764 3334456777788888889988887766654
No 292
>4a1n_A Nuclease EXOG, mitochondrial; hydrolase; 2.80A {Homo sapiens}
Probab=29.38 E-value=26 Score=22.73 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=19.7
Q ss_pred cCCchhHHHHHHHHHHHHcCCchHHH
Q 043594 8 STRNIRGGTQYQCLAVRSGFVANVYV 33 (86)
Q Consensus 8 ~~~~~~~a~~~~~~m~~~g~~~~~~~ 33 (86)
-++.+.+..+++.++++.|++||..+
T Consensus 278 ~a~~~~~l~~~~~~~~~~~~~~~~~~ 303 (335)
T 4a1n_A 278 GARSVLRLEKIMVNLKNAEIEPDDYF 303 (335)
T ss_dssp C--CTTCHHHHHHHHHC-CCCCCHHH
T ss_pred hhcCHHHHHHHHHHHHHcCCChhHHH
Confidence 35678888999999999999999854
No 293
>3qf2_A Nacht, LRR and PYD domains-containing protein 3; six helix bundle, apoptosis; 1.70A {Homo sapiens}
Probab=29.32 E-value=11 Score=20.26 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
-+.+.|+..|....-++-+..+|++|.
T Consensus 51 dLA~lLv~~y~~~~A~~vt~~if~~mn 77 (110)
T 3qf2_A 51 DLATLMIDFNGEEKAWAMAVWIFAAIN 77 (110)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHcC
Confidence 356667777777777777777777774
No 294
>4ewi_A Nacht, LRR and PYD domains-containing protein 4; NLR proteins, death domain, pyrin domain, NLRP4, ASC, innate system, inflammasome, apoptosis; 2.28A {Homo sapiens}
Probab=29.25 E-value=20 Score=19.37 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
.-+.+.|+..|....-++-+..+|++|..
T Consensus 55 ~dLa~lLv~~y~~~~A~~vtl~if~~mn~ 83 (113)
T 4ewi_A 55 EELANLLIKHYEEQQAWNITLRIFQKMDR 83 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHhCH
Confidence 34778888999998899999999999864
No 295
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=29.21 E-value=80 Score=17.67 Aligned_cols=48 Identities=15% Similarity=0.018 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 10 RNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.++..|..++..+.+.+- ..-...| -|--+|.|.|++++|++..+.+-
T Consensus 57 ~d~~~GI~LLe~l~~~~~~~~Rd~LY-yLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 57 NDERLGVKILTDIYKEAESRRRECLY-YLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchhHHHHH-HHHHHHHHhhhHHHHHHHHHHHH
Confidence 356678888888887762 1112233 23346788899999998888653
No 296
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=28.92 E-value=1.4 Score=23.15 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=20.5
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCCh
Q 043594 23 VRSGFVANVYVGSSLISFCGKCGEN 47 (86)
Q Consensus 23 ~~~g~~~~~~~~~~li~~y~~~g~~ 47 (86)
++--+.-+..+|.++|++|++.|.+
T Consensus 26 ~QYeL~k~~avyRvFiNgYAk~g~V 50 (96)
T 2f40_A 26 VQYELSTRDEFYRVFINPYAKVAEV 50 (96)
T ss_dssp HHHTTTTTTTBCCCCCCTTTTCCEE
T ss_pred HHHHhhcchhhhhheeccccccceE
Confidence 4456777888999999999999865
No 297
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.57 E-value=46 Score=22.41 Aligned_cols=53 Identities=8% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCCC------------ChhhHHHHH-HHHhhcCChhHhhhc
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPVR------------NVVSWTAII-AAFAQEWEVDMCYTF 84 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~------------~~~t~~~li-~~~~~~g~~~~a~~~ 84 (86)
++.|.+.+.|.+.++++-+..++..+..+ ..++|.=-+ .-+...+++.+|.+-
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~ 242 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQ 242 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHH
Confidence 56888999999999999999999976421 344554433 224566777777653
No 298
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.56 E-value=39 Score=20.48 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.3
Q ss_pred HHHHHHHhcCChHHHHHhhcC
Q 043594 36 SLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 36 ~li~~y~~~g~~~~A~~~~~~ 56 (86)
..|-.|.+.|.+++|.++|+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr 142 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFER 142 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHH
Confidence 456678999999999999998
No 299
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=27.48 E-value=47 Score=23.55 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCC-CC--hhhHHHHHHHHhhc
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPV-RN--VVSWTAIIAAFAQE 75 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~--~~t~~~li~~~~~~ 75 (86)
.+| ++|-.+.|||.+++|.++.++... .+ ...|.+.+..|+.+
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 355 567778899999999998887642 11 13666667777643
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.31 E-value=1e+02 Score=21.29 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHhhcCCCCCC
Q 043594 31 VYVGSSLISFCGKCGENIDVYKMFEKMPVRN 61 (86)
Q Consensus 31 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 61 (86)
..++|.++..|...+.++.|..+....+-|.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~ 261 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPH 261 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCc
Confidence 5688999999999999999999999877663
No 301
>2l6a_A Nacht, LRR and PYD domains-containing protein 12; NLRP12, pyrin, death domain, signaling protein; NMR {Homo sapiens}
Probab=26.71 E-value=19 Score=19.08 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHhhcCCCC
Q 043594 32 YVGSSLISFCGKCGENIDVYKMFEKMPV 59 (86)
Q Consensus 32 ~~~~~li~~y~~~g~~~~A~~~~~~m~~ 59 (86)
-+.+.|+..|....-++-+..+|++|..
T Consensus 57 dLa~lLv~~y~e~~A~~vt~~if~~mn~ 84 (102)
T 2l6a_A 57 EMAQLLITHFGPEEAWRLALSTFERINR 84 (102)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHcCH
Confidence 3667777778777777888888887753
No 302
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.70 E-value=3.7 Score=24.26 Aligned_cols=52 Identities=10% Similarity=-0.180 Sum_probs=35.4
Q ss_pred cchhcCCchhHHHHHHHHHHHHcCCchH-------HHHHHHHHHHHhc---CChHHHHHhhcC
Q 043594 4 TSCGSTRNIRGGTQYQCLAVRSGFVANV-------YVGSSLISFCGKC---GENIDVYKMFEK 56 (86)
Q Consensus 4 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~y~~~---g~~~~A~~~~~~ 56 (86)
...+..|+.+..+.+.+.+.+.|..++. .-.+. +...+.. |+.+-+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhc
Confidence 3445678888888899988888876554 33344 4444555 888777777764
No 303
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.98 E-value=40 Score=15.71 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.2
Q ss_pred CCchhHHHHHHHHHHHHcCCchHHH
Q 043594 9 TRNIRGGTQYQCLAVRSGFVANVYV 33 (86)
Q Consensus 9 ~~~~~~a~~~~~~m~~~g~~~~~~~ 33 (86)
.+++..|.++.+.+.++|--|....
T Consensus 6 ~RDv~RaiELle~lq~sgevp~~KL 30 (53)
T 1zl8_A 6 ERDVQRILELMEHVQKTGEVNNAKL 30 (53)
T ss_dssp HHHHHHHHHHHHHHGGGSSSTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcHHH
Confidence 3578889999999999887665543
No 304
>1ucp_A Pycard, ASC, apoptosis-associated speck-like protein containing A CARD; death domain fold; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=25.98 E-value=11 Score=19.45 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCCCCC
Q 043594 33 VGSSLISFCGKCGENIDVYKMFEKMPVRN 61 (86)
Q Consensus 33 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~ 61 (86)
+.+.|++.|....-++-+..+|++|...+
T Consensus 52 la~lLv~~y~~~~A~~vt~~if~~mn~~d 80 (91)
T 1ucp_A 52 LTDKLVSFYLETYGAELTANVLRDMGLQE 80 (91)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHcCHHH
Confidence 55666777777777777777777776543
No 305
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=24.62 E-value=93 Score=18.07 Aligned_cols=80 Identities=5% Similarity=-0.062 Sum_probs=51.3
Q ss_pred chhcCCchhHHHHHHHHHHHH-cCCchH-------HHHHHHHHHHHhcCChHHHHHhhcCC-------C-CCCh------
Q 043594 5 SCGSTRNIRGGTQYQCLAVRS-GFVANV-------YVGSSLISFCGKCGENIDVYKMFEKM-------P-VRNV------ 62 (86)
Q Consensus 5 ~~~~~~~~~~a~~~~~~m~~~-g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~m-------~-~~~~------ 62 (86)
...+.+.++.|.-+.+.+... +-.||. .+...+-+++...|.+..|...|++. . .|..
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~ 108 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN 108 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 344567777787777776543 233442 25666778999999999999999873 1 1211
Q ss_pred ---------------hhHHHHHHHHhhcCChhHhhhcc
Q 043594 63 ---------------VSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 63 ---------------~t~~~li~~~~~~g~~~~a~~~f 85 (86)
+-|- +-..|.+-|+.++|+.++
T Consensus 109 ~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 109 SASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp --------CCCCHHHHHHH-HHHHHHHTTCHHHHHHHH
T ss_pred cCCCcccccccchHHHHHH-HHHHHHHHCCHHHHHHHH
Confidence 1122 446688888888888654
No 306
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=24.31 E-value=1.5e+02 Score=19.13 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC-ChHHHHHhhcCCCC---CChhhHHHHHHHHhhc-C-ChhHhhhc
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCG-ENIDVYKMFEKMPV---RNVVSWTAIIAAFAQE-W-EVDMCYTF 84 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~m~~---~~~~t~~~li~~~~~~-g-~~~~a~~~ 84 (86)
.-++|.++.+.++... .-+..+|+.-=..+...| .++++.++++.+.. ++..+|+---..+.+. + +.++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3456777777776654 123345666555555666 47788887776642 3556676655444444 4 55555544
No 307
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=24.20 E-value=70 Score=15.31 Aligned_cols=36 Identities=3% Similarity=0.118 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCCCCChhhHHHHHHHHhhcCChhHhh
Q 043594 34 GSSLISFCGKCGENIDVYKMFEKMPVRNVVSWTAIIAAFAQEWEVDMCY 82 (86)
Q Consensus 34 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~t~~~li~~~~~~g~~~~a~ 82 (86)
-+++.+.+...|..+++..+.. ++.....|+.++|+
T Consensus 25 A~tIA~~L~~~~~~eE~v~mIr-------------~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 25 AASIADWLAQEECMAECVTLIR-------------LSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHTSSTTHHHHHHHH-------------HHHHHHC-------
T ss_pred HHHHHHHHHhCCCHHHHHHHHH-------------HHHHHccchHhHhh
Confidence 4555566666666555555443 34455566665553
No 308
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.72 E-value=1.2e+02 Score=19.11 Aligned_cols=52 Identities=6% Similarity=-0.005 Sum_probs=41.9
Q ss_pred hhcCCchhHHHHHHHHHHHH-cCCchHHHHHHHHHHHHhcCChHHHHHhhcCC
Q 043594 6 CGSTRNIRGGTQYQCLAVRS-GFVANVYVGSSLISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 57 (86)
|....++-....+++.|+.. .-+|+++..--+|..|.+--+-..|++.+.+-
T Consensus 183 C~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 183 CQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp TSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 44455666777788888775 36899999999999999999999999988753
No 309
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.66 E-value=71 Score=15.23 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFC 41 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y 41 (86)
.++|++.|.+|++..--+..-+|.-.|...
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367888888887765334455777777666
No 310
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.53 E-value=55 Score=21.32 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=18.6
Q ss_pred hcchhcCCc---hhHHHHHHHHHHHHc----CCchHH
Q 043594 3 VTSCGSTRN---IRGGTQYQCLAVRSG----FVANVY 32 (86)
Q Consensus 3 l~~~~~~~~---~~~a~~~~~~m~~~g----~~~~~~ 32 (86)
++..|..|+ +.+|.++|......+ +.||..
T Consensus 204 l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr 240 (419)
T 3rjo_A 204 LLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT 240 (419)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Confidence 344445554 668888888877642 666643
No 311
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.41 E-value=1.3e+02 Score=21.11 Aligned_cols=74 Identities=11% Similarity=0.093 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHHHHcCCchHHH--------HHHHHHHHHhc-CC--hHHHHHhhcC-----CCCC--ChhhHHHHHHHH
Q 043594 11 NIRGGTQYQCLAVRSGFVANVYV--------GSSLISFCGKC-GE--NIDVYKMFEK-----MPVR--NVVSWTAIIAAF 72 (86)
Q Consensus 11 ~~~~a~~~~~~m~~~g~~~~~~~--------~~~li~~y~~~-g~--~~~A~~~~~~-----m~~~--~~~t~~~li~~~ 72 (86)
.++++.-++..+...-|.+|... ..-|++.-=+. +. -+...+++.. .++| +..-| .+|..+
T Consensus 174 ~l~~~l~Il~cl~a~~F~~d~~~~~~~~~~~~e~Ll~WVN~~d~eP~~E~~~eVm~~~~~~~~~~P~eHp~FW-~~v~~L 252 (570)
T 3f3f_C 174 ELEESLTVLNCLRTMYFILDGQDVEENRSEFIESLLNWINRSDGEPDEEYIEQVFSVKDSTAGKKVFETQYFW-KLLNQL 252 (570)
T ss_dssp HHHHHHHHHHHHHHHHSSSTTSCGGGGHHHHHHHHHHHHHHHCCCSCHHHHHHHTTC----CCSSSSCSHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHhccCCCCHHHHHHHHhcccccCCCCCCCCccHH-HHHHHH
Confidence 45566666666666666554432 23444433222 22 3567778875 4555 55677 788888
Q ss_pred hhcCChhHhhhcc
Q 043594 73 AQEWEVDMCYTFI 85 (86)
Q Consensus 73 ~~~g~~~~a~~~f 85 (86)
.-.|.+++|..++
T Consensus 253 vLRGl~~qA~~~L 265 (570)
T 3f3f_C 253 VLRGLLSQAIGCI 265 (570)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcccHHHHHHHH
Confidence 8889999888765
No 312
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=23.30 E-value=71 Score=18.83 Aligned_cols=13 Identities=15% Similarity=-0.105 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHH
Q 043594 30 NVYVGSSLISFCG 42 (86)
Q Consensus 30 ~~~~~~~li~~y~ 42 (86)
|+.+...+++.|.
T Consensus 75 dv~~va~lLK~fl 87 (216)
T 1pbw_A 75 DVHVLADAFKRYL 87 (216)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5666666666553
No 313
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=23.28 E-value=1.2e+02 Score=17.61 Aligned_cols=38 Identities=11% Similarity=-0.095 Sum_probs=22.3
Q ss_pred hhcCCchhHHHHHHHHHHHHcC-----C-chHHHHHHHHHHHHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSGF-----V-ANVYVGSSLISFCGK 43 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g~-----~-~~~~~~~~li~~y~~ 43 (86)
|...|+..+..++-..+.+..- . .|+.+...+++.|.+
T Consensus 39 fR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flr 82 (201)
T 2ovj_A 39 YRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLR 82 (201)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHH
T ss_pred eeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHH
Confidence 4456666666666665544321 1 267777777777754
No 314
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.79 E-value=98 Score=16.51 Aligned_cols=46 Identities=2% Similarity=-0.231 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.+++.+++....+..- ....+...|+.++-++|+-+-|.++-..+.
T Consensus 53 ~eq~~~mL~~W~~~~g-~~~Atv~~L~~aL~~~~r~diae~l~~~ie 98 (118)
T 2of5_H 53 DEQIRHMLFSWAERQA-GQPGAVGLLVQALEQSDRQDVAEEVRAVLE 98 (118)
T ss_dssp HHHHHHHHHHHHHTTS-SCSSHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 3466666666655421 125788899999999999998888777653
No 315
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=22.77 E-value=1.3e+02 Score=17.90 Aligned_cols=38 Identities=3% Similarity=-0.180 Sum_probs=20.0
Q ss_pred hhcCCchhHHHHHHHHHHHHc------C----CchHHHHHHHHHHHHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSG------F----VANVYVGSSLISFCGK 43 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g------~----~~~~~~~~~li~~y~~ 43 (86)
|...|...+..++.......| + ..|+.+...+++.|.+
T Consensus 59 fR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flR 106 (231)
T 1f7c_A 59 YRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLR 106 (231)
T ss_dssp TTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHH
T ss_pred eeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHH
Confidence 334555555555554332211 1 2467777777777644
No 316
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.75 E-value=1.1e+02 Score=17.26 Aligned_cols=48 Identities=15% Similarity=0.018 Sum_probs=32.5
Q ss_pred CchhHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 10 RNIRGGTQYQCLAVRSGF-VANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 10 ~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
.++.++..++..+.+.+- ..-...|- |--+|.|.|++++|++..+.+-
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYy-LAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYY-LTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHH-HHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHH-HHHHHHHhhhHHHHHHHHHHHH
Confidence 456788888888888652 12222332 2347889999999999888763
No 317
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=22.66 E-value=36 Score=19.98 Aligned_cols=45 Identities=18% Similarity=0.003 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 12 IRGGTQYQCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 12 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
+.+.+++...+..... |-.--=-+|.++..-|++++|.++.+++.
T Consensus 15 l~~~~~~~~~LR~qrH--df~NkLqvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 15 TALTNELIHLLGHSRH--DWMNKLQLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444321 22222346889999999999999998764
No 318
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=80 Score=15.37 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=9.0
Q ss_pred hcCChHHHHHhhcCCC
Q 043594 43 KCGENIDVYKMFEKMP 58 (86)
Q Consensus 43 ~~g~~~~A~~~~~~m~ 58 (86)
..|+++.|.+.+-+|.
T Consensus 44 ~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 44 NSGAVDATIDQLLQMN 59 (67)
T ss_dssp HTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcC
Confidence 3456666666555544
No 319
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=22.29 E-value=1.3e+02 Score=17.91 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCchHHHH---HHHHHHHHhcCChHHHHHhhcCCCCC-ChhhHHHHHHHHhhcCChhH
Q 043594 18 YQCLAVRSGFVANVYVG---SSLISFCGKCGENIDVYKMFEKMPVR-NVVSWTAIIAAFAQEWEVDM 80 (86)
Q Consensus 18 ~~~~m~~~g~~~~~~~~---~~li~~y~~~g~~~~A~~~~~~m~~~-~~~t~~~li~~~~~~g~~~~ 80 (86)
+.+.+.+.|..++.... .+.+...+..|..+-+..+++.-..+ +...-.+.+.-.++.|..+-
T Consensus 110 ~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 34444455555543321 34455556667777666666654332 22123333444445555543
No 320
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=21.79 E-value=19 Score=22.48 Aligned_cols=42 Identities=5% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCchHHHHHH--HHHHHH---hcCChHHHHHhhcCC
Q 043594 16 TQYQCLAVRSGFVANVYVGSS--LISFCG---KCGENIDVYKMFEKM 57 (86)
Q Consensus 16 ~~~~~~m~~~g~~~~~~~~~~--li~~y~---~~g~~~~A~~~~~~m 57 (86)
...|.+|.++|+-.|+.+-++ ++.--. +.|++++|..+|.+-
T Consensus 3 ~~~~~~m~ks~~g~dp~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~ea 49 (257)
T 2ymb_A 3 HHHHHHMAKSGLRQDPQSTAAATVLKRAVELDSESRYPQALVCYQEG 49 (257)
T ss_dssp -----------------------------------------------
T ss_pred cchhhhhhhccCCCChhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345778999988777665554 343333 358889998888764
No 321
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=21.42 E-value=1.3e+02 Score=17.39 Aligned_cols=38 Identities=5% Similarity=-0.044 Sum_probs=23.4
Q ss_pred hhcCCchhHHHHHHHHHHHHc----CC----chHHHHHHHHHHHHh
Q 043594 6 CGSTRNIRGGTQYQCLAVRSG----FV----ANVYVGSSLISFCGK 43 (86)
Q Consensus 6 ~~~~~~~~~a~~~~~~m~~~g----~~----~~~~~~~~li~~y~~ 43 (86)
|...|+..+..++-..+.+.| +. .|+.+...+++.|.+
T Consensus 46 fR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flr 91 (202)
T 2osa_A 46 YRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFR 91 (202)
T ss_dssp TTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHH
T ss_pred eeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHH
Confidence 445677667777766665543 22 366777777777644
No 322
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=21.31 E-value=34 Score=24.12 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHhhcCCCC--CChhhHHHHHHHHhhcCChhHhhhcc
Q 043594 30 NVYVGSSLISFCGKCGENIDVYKMFEKMPV--RNVVSWTAIIAAFAQEWEVDMCYTFI 85 (86)
Q Consensus 30 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~t~~~li~~~~~~g~~~~a~~~f 85 (86)
|+..|.-+|....+.|.+++-...+.-..+ ++...=+.||-+|++.++..+-.++.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl 139 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH
Confidence 455677777777788888777776664332 34444488999999999887765543
No 323
>2q97_T Toxofilin, actin, alpha skeletal muscle; structural protein, structural protein-cell invasion complex; HET: HIC ATP; 2.50A {Toxoplasma gondii}
Probab=20.94 E-value=1e+02 Score=16.67 Aligned_cols=40 Identities=15% Similarity=-0.081 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHh-cCChHHHHHhhcC
Q 043594 17 QYQCLAVRSGFVANVYVGSSLISFCGK-CGENIDVYKMFEK 56 (86)
Q Consensus 17 ~~~~~m~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~ 56 (86)
+-|+...+.-...++.+=..||+.|-+ .+.++.|+.+|..
T Consensus 69 ~aYEqvq~dl~~mSPEtKa~LIen~~kEk~~~~~Ar~LF~r 109 (129)
T 2q97_T 69 KAYEQVQRDLSQLSPETKALLIENQRKEKTLLEKARKLFQR 109 (129)
T ss_dssp HHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776667778888999999987 5888999999975
No 324
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=20.90 E-value=52 Score=13.77 Aligned_cols=21 Identities=5% Similarity=0.116 Sum_probs=13.6
Q ss_pred HHHHHhcCChHHHHHhhcCCC
Q 043594 38 ISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 38 i~~y~~~g~~~~A~~~~~~m~ 58 (86)
+..|-+-|..++|..+-.+|.
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 345666688888877755544
No 325
>2end_A Endonuclease V; 1.45A {Enterobacteria phage T4} SCOP: a.18.1.1 PDB: 1enj_A 1eni_A 1enk_A 2fcc_A* 1vas_A*
Probab=20.86 E-value=58 Score=18.40 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCch
Q 043594 16 TQYQCLAVRSGFVAN 30 (86)
Q Consensus 16 ~~~~~~m~~~g~~~~ 30 (86)
.+++++|.++|+.++
T Consensus 72 ~~L~~Em~~RGy~~~ 86 (138)
T 2end_A 72 IELIAECLKRGFNIK 86 (138)
T ss_dssp HHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHcCCCCC
Confidence 478999999998754
No 326
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.85 E-value=1e+02 Score=16.06 Aligned_cols=34 Identities=3% Similarity=-0.082 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHH--HHHcCCchHH-HHHHHHHHHHh
Q 043594 10 RNIRGGTQYQCLA--VRSGFVANVY-VGSSLISFCGK 43 (86)
Q Consensus 10 ~~~~~a~~~~~~m--~~~g~~~~~~-~~~~li~~y~~ 43 (86)
..+++|.++...| ...+++|+.. .++.=|..|-+
T Consensus 45 ~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~ 81 (102)
T 1vcs_A 45 KQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQ 81 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHH
Confidence 3478888888888 3356666543 56666666643
No 327
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.56 E-value=80 Score=17.89 Aligned_cols=39 Identities=8% Similarity=-0.016 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCchHH--HHHHHHHHHHhcCChHHHHHhhcC
Q 043594 18 YQCLAVRSGFVANVY--VGSSLISFCGKCGENIDVYKMFEK 56 (86)
Q Consensus 18 ~~~~m~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~ 56 (86)
+.+.+.+.|..++.. ...+.+...++.|+.+-+..+++.
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 344445555544432 122344445566777766666664
No 328
>1lqv_C Vitamin-K dependent protein C; GLA (gamma-carboxyglutamic acid) residues, phospholipid BIND groove, Ca ION binding, blood clotting; HET: CGU NAG NDG PTY; 1.60A {Homo sapiens} SCOP: g.32.1.1 PDB: 3jtc_C*
Probab=20.30 E-value=60 Score=13.63 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=6.0
Q ss_pred ChHHHHHhhc
Q 043594 46 ENIDVYKMFE 55 (86)
Q Consensus 46 ~~~~A~~~~~ 55 (86)
.+++|+++|+
T Consensus 23 s~EEarEvfe 32 (33)
T 1lqv_C 23 DFEEAKEIFQ 32 (33)
T ss_dssp CHHHHHHHHC
T ss_pred CHHHHHHHhc
Confidence 4566666664
No 329
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.18 E-value=43 Score=17.87 Aligned_cols=37 Identities=5% Similarity=-0.068 Sum_probs=23.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhcCChHHHHHhhcCCC
Q 043594 19 QCLAVRSGFVANVYVGSSLISFCGKCGENIDVYKMFEKMP 58 (86)
Q Consensus 19 ~~~m~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 58 (86)
+.-+...| |.++.--=---.++.|++++|.+.+++-.
T Consensus 11 m~iI~~aG---~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 11 FEIVAYAG---DARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHh---HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444555 44433333334678999999999998753
No 330
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.11 E-value=88 Score=17.55 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=12.9
Q ss_pred HHHHHHhcCChHHHHHhhcCC
Q 043594 37 LISFCGKCGENIDVYKMFEKM 57 (86)
Q Consensus 37 li~~y~~~g~~~~A~~~~~~m 57 (86)
.+...++.|+.+-+..+++.-
T Consensus 39 ~L~~A~~~~~~~~v~~Ll~~~ 59 (228)
T 2dzn_A 39 PLHWSVSFQAHEITSFLLSKM 59 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHhcc
Confidence 344455667777776666655
Done!