Query 043596
Match_columns 96
No_of_seqs 105 out of 226
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 10:55:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_H RPL10, 60S ribosomal pr 100.0 2.9E-33 9.9E-38 214.0 8.0 79 8-86 132-210 (215)
2 3iz5_I 60S ribosomal protein L 100.0 5.4E-35 1.9E-39 224.7 -8.6 88 8-95 132-219 (224)
3 3j0l_J Ribosomal protein L10; 100.0 5.6E-33 1.9E-37 212.9 1.1 81 8-88 130-210 (219)
4 2zkr_h 60S ribosomal protein L 100.0 2.2E-29 7.5E-34 192.5 3.6 80 9-88 133-212 (214)
5 2pa2_A 60S ribosomal protein L 99.7 1.4E-17 4.6E-22 121.7 4.2 50 9-58 102-151 (151)
6 3j21_N 50S ribosomal protein L 98.7 4.3E-09 1.5E-13 78.8 3.2 39 8-46 129-169 (181)
7 1vq8_H 50S ribosomal protein L 98.7 1.4E-08 4.8E-13 75.3 4.2 39 8-46 130-168 (171)
8 1ffk_F Ribosomal protein L10E; 98.5 7.7E-08 2.6E-12 70.5 3.0 37 8-46 118-154 (157)
9 3bbo_O Ribosomal protein L16; 97.7 1.3E-05 4.3E-10 57.1 2.6 35 8-44 100-134 (135)
10 2zjr_J 50S ribosomal protein L 97.7 6E-06 2.1E-10 59.2 0.8 34 10-45 103-136 (142)
11 3r8s_M 50S ribosomal protein L 97.5 6.7E-05 2.3E-09 53.4 4.0 35 8-44 99-133 (136)
12 2ftc_I Mitochondrial ribosomal 97.2 0.00014 4.6E-09 50.5 2.4 31 8-39 87-117 (118)
13 3rtx_A MRNA-capping enzyme; gu 48.3 26 0.00088 27.4 4.8 36 23-67 32-67 (343)
14 1ofc_X ISWI protein; nuclear p 38.2 14 0.00047 29.0 1.8 18 46-63 107-124 (304)
15 2y9y_A Imitation switch protei 34.4 14 0.00048 29.9 1.3 18 46-63 120-137 (374)
16 2foj_A Ubiquitin carboxyl-term 33.5 16 0.00055 24.0 1.3 38 44-81 112-153 (155)
17 3kyh_C MRNA-capping enzyme sub 28.9 60 0.0021 26.7 4.2 23 23-45 31-55 (461)
18 2q2k_A Hypothetical protein; p 28.7 23 0.00079 22.3 1.3 12 19-30 50-61 (70)
19 2eg2_A Nitrogen regulatory pro 27.3 61 0.0021 20.7 3.3 36 11-46 60-96 (112)
20 3oc8_A Toxin coregulated pilus 25.8 22 0.00076 25.1 1.0 41 32-77 79-129 (137)
21 2ns1_B Nitrogen regulatory pro 25.3 54 0.0019 21.2 2.8 37 10-46 63-100 (116)
22 2gw8_A PII signal transduction 23.3 63 0.0021 20.7 2.8 37 10-46 61-98 (114)
23 3tsn_A 4-hydroxythreonine-4-ph 22.9 1E+02 0.0035 24.8 4.4 18 67-84 168-185 (367)
24 2obn_A Hypothetical protein; s 22.6 1.3E+02 0.0046 23.5 5.0 57 6-62 253-324 (349)
25 4aty_A Terephthalate 1,2-CIS-d 22.4 77 0.0026 24.5 3.6 19 66-84 174-192 (349)
26 2k9k_A TONB2; metal transport; 21.8 50 0.0017 20.5 2.0 20 18-38 66-85 (106)
27 2hi1_A 4-hydroxythreonine-4-ph 20.8 34 0.0012 27.0 1.2 45 26-84 130-177 (330)
28 2j9c_A GLNK1, hypothetical nit 20.5 80 0.0028 20.5 2.9 35 12-46 63-98 (119)
No 1
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H
Probab=99.98 E-value=2.9e-33 Score=214.04 Aligned_cols=79 Identities=39% Similarity=0.634 Sum_probs=77.0
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeEEecccccccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCC
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSENRIVPDGVNAKLFECHGPLANRQ 86 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Lv~DG~~vk~~~~~GpL~~~~ 86 (96)
.-++|+|+++++|.++|+||||||++|||++|||++|+|||||+|+++||++|++||+|++|||+|||+++||||++|.
T Consensus 132 Gqilfei~g~~~~~~~A~eALr~A~~KlP~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~k~~~~~gpl~~~~ 210 (215)
T 4a17_H 132 GSILFSVRVKEPHVKYAIDALTRAKAKFPGRQKVVTSQKWGFTKLTRAQYSRLRNQKKLVTDGSNVKVIGERGPLSRLE 210 (215)
T ss_dssp TCEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESBCTTSSSBHHHHHHHHHTTCEEEETTEEEECCTTSCTTTSG
T ss_pred CCEEEEEEecCCCHHHHHHHHHHHhhhCCCceEEEEccccCCCccCHHHHHHHHHCCeEecCCccEEEccCCCCHHHHh
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999995
No 2
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_I 1s1i_I 3jyw_I
Probab=99.97 E-value=5.4e-35 Score=224.67 Aligned_cols=88 Identities=59% Similarity=0.927 Sum_probs=84.7
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeEEecccccccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCCC
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSENRIVPDGVNAKLFECHGPLANRQP 87 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Lv~DG~~vk~~~~~GpL~~~~~ 87 (96)
.-++|+|+++++|+++|+||||||++|||++|||++|+|||||+|+++||++|++||+|++|||+|||+++||||++|.+
T Consensus 132 Gqilfei~g~~~~~~~A~eALrrA~~KLP~ktkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~vk~~~~~gpl~~~~~ 211 (224)
T 3iz5_I 132 GQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAP 211 (224)
T ss_dssp CCSEECCCCCCCCSSCSSSSSSCCCSCCCCCEEEEECCTTTEEEEEEECCSSSCSHHHHHHHHHHHTSSSCEECCCCCSS
T ss_pred CCEEEEEEecCcCHHHHHHHHHHHhhhCCCceEEEEecccCccccCHHHHHHHHHcCcEecCCcceEEcCCCCChHHcCc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccC
Q 043596 88 GRAFLEAT 95 (96)
Q Consensus 88 ~~~~~~~~ 95 (96)
+.+|+.++
T Consensus 212 ~~~~~~~~ 219 (224)
T 3iz5_I 212 GKAFLAET 219 (224)
T ss_dssp TTHHHHHH
T ss_pred ccccccch
Confidence 99988764
No 3
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I
Probab=99.97 E-value=5.6e-33 Score=212.93 Aligned_cols=81 Identities=37% Similarity=0.601 Sum_probs=78.0
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeEEecccccccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCCC
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSENRIVPDGVNAKLFECHGPLANRQP 87 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Lv~DG~~vk~~~~~GpL~~~~~ 87 (96)
.-++|+|+++++|+++|+||||||++|||++|||++|+|||||+|+++||++|++||+|++|||+|||+++||||++|..
T Consensus 130 Gqilfei~g~~~~~~~A~eALr~A~~KLP~~tkiv~~~kwgft~~~~~~~~~~~~~~~l~~dg~~~k~~~~~gpl~~~~~ 209 (219)
T 3j0l_J 130 GQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSLENNIR 209 (219)
T ss_dssp TCEESCCCCCGGGHHHHHHHHHHHHHSSSCCCCCEECCCSSSSSCSCHHHHTTTTSCCSCCCSSSCCCSCCSSSCHHHHH
T ss_pred CCEEEEEEecCcCHHHHHHHHHHHhhhCCCCeEEEEecccCccccCHHHHHHHHHCCeEecCCccEEEccCCCCHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 043596 88 G 88 (96)
Q Consensus 88 ~ 88 (96)
.
T Consensus 210 ~ 210 (219)
T 3j0l_J 210 E 210 (219)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.95 E-value=2.2e-29 Score=192.45 Aligned_cols=80 Identities=43% Similarity=0.668 Sum_probs=36.0
Q ss_pred CceEEeeCCCCChhHHHHHHHhcCccCCCceeEEecccccccccChHHHHhhhhcCeeeccCceEEEeCCCCCCCCCCCC
Q 043596 9 PTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSENRIVPDGVNAKLFECHGPLANRQPG 88 (96)
Q Consensus 9 ~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Lv~DG~~vk~~~~~GpL~~~~~~ 88 (96)
-++++|++++.+.++|.||||+|++|||++|||++|++||||+|+++||++|+++|+|++|||+|||+++||||++|...
T Consensus 133 qilfEi~~~~v~~~~A~eALr~A~~KLP~ktkiv~~~~~gft~~~~~~~~~~~~~~~~~~dg~~~~~~~~~g~l~~~~~~ 212 (214)
T 2zkr_h 133 QVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPLDKWRAL 212 (214)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC-------------------------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCccccCHHHHHHHHHCCeEecCCceEEEECCCCChHHhhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999754
No 5
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=99.68 E-value=1.4e-17 Score=121.73 Aligned_cols=50 Identities=50% Similarity=0.733 Sum_probs=42.8
Q ss_pred CceEEeeCCCCChhHHHHHHHhcCccCCCceeEEecccccccccChHHHH
Q 043596 9 PTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYL 58 (96)
Q Consensus 9 ~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~ 58 (96)
-++++|++++.+.++|.||||||++|||++|||++|++||||+|+++||+
T Consensus 102 ~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~~~gft~~~~~~~~ 151 (151)
T 2pa2_A 102 QVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFE 151 (151)
T ss_dssp BEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCCCCCBC------
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCCCCCChhhCC
Confidence 47899999999999999999999999999999999999999999999995
No 6
>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.74 E-value=4.3e-09 Score=78.81 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCce--eEEeccc
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQ--KIIVSRK 46 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQ--KI~vSkk 46 (96)
.-++|+|+++++|.++|+||||||++|||++| ||++|+.
T Consensus 129 Gqilfei~~~~~~~~~A~eAlr~A~~KlP~~t~~kiv~~~~ 169 (181)
T 3j21_N 129 DQKILSIRVNRQHLKFAIEGARRAAMKFPCKCYYRIYDKEG 169 (181)
T ss_dssp SEEEEEEEECSTTHHHHHHHHHHHHHSSSSCCSSCEEECCC
T ss_pred CCEEEEEEecCCCHHHHHHHHHHHhccCCCCeeeEEEEecc
Confidence 34799999999999999999999999999999 9999975
No 7
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=98.67 E-value=1.4e-08 Score=75.34 Aligned_cols=39 Identities=23% Similarity=0.122 Sum_probs=36.6
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeEEeccc
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRK 46 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSkk 46 (96)
.-++++|++++.+.++|.||||+|++|||++|||+++++
T Consensus 130 G~ilfei~~~~v~~~~A~eAlr~A~~KLP~ktkiv~~~~ 168 (171)
T 1vq8_H 130 GEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPA 168 (171)
T ss_dssp TCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECSC
T ss_pred CCEEEEEECcCCCHHHHHHHHHHHHhhCCCcEEEEEecC
Confidence 347899999999999999999999999999999999876
No 8
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=98.45 E-value=7.7e-08 Score=70.48 Aligned_cols=37 Identities=19% Similarity=-0.057 Sum_probs=33.7
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeEEeccc
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRK 46 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSkk 46 (96)
.-++|+|++.+++ +|.||||+|++|||++|||++|++
T Consensus 118 G~ilfei~gv~~~--~A~eAlr~A~~KlP~ktkiv~~~~ 154 (157)
T 1ffk_F 118 ANHDFIAWVNPDP--AVEFAWRRAYMKVTPTVNIDSSPA 154 (157)
T ss_pred CCEEEEEeccCHH--HHHHHHHHHHhhCCCcEEEEEecC
Confidence 3478999999877 999999999999999999999886
No 9
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=97.75 E-value=1.3e-05 Score=57.05 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeEEec
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVS 44 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vS 44 (96)
.-+++.|++ .+.++|.||||+|.+|+|++++|++|
T Consensus 100 G~ilfEi~g--v~~~~A~eAlr~a~~KLP~~~kiv~~ 134 (135)
T 3bbo_O 100 GRILYEISG--VAENIARRAVAIAASKMPIRTQFIIS 134 (135)
T ss_dssp TCEEEEECS--SCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCEEEEEec--CCHHHHHHHHHHHHhhCCCcEEEEec
Confidence 347899999 79999999999999999999999875
No 10
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...
Probab=97.74 E-value=6e-06 Score=59.20 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=31.5
Q ss_pred ceEEeeCCCCChhHHHHHHHhcCccCCCceeEEecc
Q 043596 10 TAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSR 45 (96)
Q Consensus 10 ~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSk 45 (96)
++++|++ .+.++|.||||+|.+|+|++++|++++
T Consensus 103 ilfEi~g--v~~~~A~eAlr~A~~KLP~~~kiv~~~ 136 (142)
T 2zjr_J 103 VMFEVAG--VTEEQAKEAFRLAGHKLPIQTKMVKRE 136 (142)
T ss_dssp EEECCCS--SCSTTTTTHHHHHHHTCSSCEEEECSC
T ss_pred EEEEEeC--CCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 6888988 889999999999999999999999876
No 11
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=97.55 E-value=6.7e-05 Score=53.42 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=30.6
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeEEec
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVS 44 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vS 44 (96)
.-+++.|++ .+.++|.||||+|.+|+|++++|++-
T Consensus 99 G~ilfEi~g--~~~~~A~eAlr~a~~KLP~~~kiv~~ 133 (136)
T 3r8s_M 99 GKVLYEMDG--VPEELAREAFKLAAAKLPIKTTFVTK 133 (136)
T ss_dssp TCEEEEEES--SCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred CCEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 347889998 48999999999999999999998753
No 12
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=97.24 E-value=0.00014 Score=50.54 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=27.7
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCce
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQ 39 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQ 39 (96)
.-++++|++ +.+.++|.||||+|.+|+|++-
T Consensus 87 G~ilfEi~g-~~~~~~a~eAlr~a~~KlP~~~ 117 (118)
T 2ftc_I 87 GRLVVEMGG-RCEFEEVQGFLDQVAHKLPFAA 117 (118)
T ss_pred CCEEEEEec-cCCHHHHHHHHHHHHhhCCCCC
Confidence 347899999 5999999999999999999974
No 13
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=48.31 E-value=26 Score=27.40 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=23.4
Q ss_pred HHHHHHHhcCccCCCceeEEecccccccccChHHHHhhhhcCeee
Q 043596 23 HAQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSENRIV 67 (96)
Q Consensus 23 ~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Lv 67 (96)
.+.+-|.+.+--|||-|-|-. +|..+..|..+...+
T Consensus 32 ~v~~~~~~~~~~FPGsqPVS~---------~r~nl~~L~~~~y~v 67 (343)
T 3rtx_A 32 KCHQFCGWEGSGFPGAQPVSM---------DKQNIRLLEQKPYKV 67 (343)
T ss_dssp HHHHHTTCCSSSCCSEEEEEC---------CTTGGGHHHHSCEEE
T ss_pred HHHHHhCCCCCCCCCceeecc---------chhhHHhhccCCEEE
Confidence 344555566778999999944 445555666666553
No 14
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=38.17 E-value=14 Score=28.99 Aligned_cols=18 Identities=17% Similarity=0.433 Sum_probs=15.2
Q ss_pred cccccccChHHHHhhhhc
Q 043596 46 KWGFTKFSRANYLRCKSE 63 (96)
Q Consensus 46 kWGFTk~~r~ey~~~~~e 63 (96)
.+||++|+|.||......
T Consensus 107 ~eGF~~W~rrdf~~Fi~a 124 (304)
T 1ofc_X 107 SQGFTAWTKRDFNQFIKA 124 (304)
T ss_dssp TSSCTTCCHHHHHHHHHH
T ss_pred HhhhcccCHHHHHHHHHH
Confidence 589999999999876554
No 15
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=34.44 E-value=14 Score=29.93 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.4
Q ss_pred cccccccChHHHHhhhhc
Q 043596 46 KWGFTKFSRANYLRCKSE 63 (96)
Q Consensus 46 kWGFTk~~r~ey~~~~~e 63 (96)
.+||++|+|.||..+...
T Consensus 120 ~eGF~~WnrrDF~~FI~a 137 (374)
T 2y9y_A 120 SEGFTNWNKLEFRKFITV 137 (374)
T ss_dssp HHCCCCSCHHHHHHHHHH
T ss_pred HhhhcccCHHHHHHHHHH
Confidence 589999999999887654
No 16
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=33.47 E-value=16 Score=23.97 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred cccccccccChHHHHhhhhcCeeeccC----ceEEEeCCCCC
Q 043596 44 SRKWGFTKFSRANYLRCKSENRIVPDG----VNAKLFECHGP 81 (96)
Q Consensus 44 SkkWGFTk~~r~ey~~~~~eg~Lv~DG----~~vk~~~~~Gp 81 (96)
+..|||++|-.-+-+.-.++|.|+.|- |.|+.....|-
T Consensus 112 ~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 112 ENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp BCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred CCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence 356999998554332222556665443 66776665553
No 17
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=28.92 E-value=60 Score=26.67 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=15.4
Q ss_pred HHHHHHHhcCc--cCCCceeEEecc
Q 043596 23 HAQEALRRAKF--KFPVRQKIIVSR 45 (96)
Q Consensus 23 ~viEALRRAKf--KFPGRQKI~vSk 45 (96)
.|.+-|.+.+- .|||.|-|-+|+
T Consensus 31 ~v~~l~~~~~~~~~FPGsqPVS~~r 55 (461)
T 3kyh_C 31 MVCKLLNSPKPTKTFPGSQPVSFQH 55 (461)
T ss_dssp HHHHHTTSCGGGSSCSSCEEEECCH
T ss_pred HHHHHHCCCCCCCcCCCCcceeecH
Confidence 34444444455 899999996655
No 18
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=28.68 E-value=23 Score=22.33 Aligned_cols=12 Identities=50% Similarity=0.808 Sum_probs=9.9
Q ss_pred CChhHHHHHHHh
Q 043596 19 SNSHHAQEALRR 30 (96)
Q Consensus 19 ~~~~~viEALRR 30 (96)
...+|+.|||||
T Consensus 50 tktahirealrr 61 (70)
T 2q2k_A 50 TKTAHIREALRR 61 (70)
T ss_dssp CHHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 346899999998
No 19
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=27.28 E-value=61 Score=20.66 Aligned_cols=36 Identities=11% Similarity=-0.083 Sum_probs=28.6
Q ss_pred eEEeeCCCCChhHHHHHHHhcCc-cCCCceeEEeccc
Q 043596 11 AGCNDGTDSNSHHAQEALRRAKF-KFPVRQKIIVSRK 46 (96)
Q Consensus 11 ~~~vRtKd~~~~~viEALRRAKf-KFPGRQKI~vSkk 46 (96)
...+=+.|...+.+++|++.+-. --||-=||+|+.=
T Consensus 60 ~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~pV 96 (112)
T 2eg2_A 60 KIEVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPV 96 (112)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHCCSSTTCCEEEEEEC
T ss_pred EEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEh
Confidence 45666788999999999998644 4788889999864
No 20
>3oc8_A Toxin coregulated pilus biosynthesis protein F; immunoglobulin-like fold, cell adhesion; 2.10A {Vibrio cholerae}
Probab=25.76 E-value=22 Score=25.07 Aligned_cols=41 Identities=32% Similarity=0.476 Sum_probs=26.5
Q ss_pred CccCCCceeEEecccc---cc----cccChHHHHhhhhcCee---eccCceEEEeC
Q 043596 32 KFKFPVRQKIIVSRKW---GF----TKFSRANYLRCKSENRI---VPDGVNAKLFE 77 (96)
Q Consensus 32 KfKFPGRQKI~vSkkW---GF----Tk~~r~ey~~~~~eg~L---v~DG~~vk~~~ 77 (96)
.--|||+|.--+|.+- || |-|+...| .-++ ..||.+|++..
T Consensus 79 snn~~gkkiy~vstnd~hngyqwsntmfsnsky-----rtqvvltk~dgsgvklys 129 (137)
T 3oc8_A 79 SNNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNY-----KTQILLTKGDGSGVKLYS 129 (137)
T ss_dssp SCCCTTEEEEEEECCHHHHTSHHHHHHTTCTTC-----EEEEEEEETTSCSCCEEC
T ss_pred CCCCCCceEEEEecccccccceechhhccCCCc-----eEEEEEEecCCCceEEeh
Confidence 3469999999999863 43 44444433 2222 37999999765
No 21
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=25.34 E-value=54 Score=21.16 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=29.6
Q ss_pred ceEEeeCCCCChhHHHHHHHhcCcc-CCCceeEEeccc
Q 043596 10 TAGCNDGTDSNSHHAQEALRRAKFK-FPVRQKIIVSRK 46 (96)
Q Consensus 10 ~~~~vRtKd~~~~~viEALRRAKfK-FPGRQKI~vSkk 46 (96)
+...+-+.|...+.|++|++.+-.. -||-=||+|+.=
T Consensus 63 ~~ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pV 100 (116)
T 2ns1_B 63 VKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAEL 100 (116)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEh
Confidence 4455667789999999999987555 889899999864
No 22
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=23.35 E-value=63 Score=20.73 Aligned_cols=37 Identities=14% Similarity=-0.150 Sum_probs=29.1
Q ss_pred ceEEeeCCCCChhHHHHHHHhcCc-cCCCceeEEeccc
Q 043596 10 TAGCNDGTDSNSHHAQEALRRAKF-KFPVRQKIIVSRK 46 (96)
Q Consensus 10 ~~~~vRtKd~~~~~viEALRRAKf-KFPGRQKI~vSkk 46 (96)
+...+=+.|...+.+++|++.+-. --||-=||+|+.=
T Consensus 61 ~~ieivv~d~~v~~vv~~I~~~~~tg~~GdGkiFV~pV 98 (114)
T 2gw8_A 61 IKIELVLADDAVERAIDVIVEVARSGKIGDGKIFVLPV 98 (114)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHCCSSTTCCEEEEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHHHhCCCCCCCEEEEEEEh
Confidence 455666778899999999998644 4788889999864
No 23
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=22.88 E-value=1e+02 Score=24.80 Aligned_cols=18 Identities=33% Similarity=0.289 Sum_probs=14.7
Q ss_pred eccCceEEEeCCCCCCCC
Q 043596 67 VPDGVNAKLFECHGPLAN 84 (96)
Q Consensus 67 v~DG~~vk~~~~~GpL~~ 84 (96)
..++-.|-+...|=||.+
T Consensus 168 ~~~~LrV~lvT~HipL~~ 185 (367)
T 3tsn_A 168 GCKELFVGLFSEHIPLAK 185 (367)
T ss_dssp EETTEEEEESSCSSCGGG
T ss_pred ccCCcEEEEecccccHHH
Confidence 467788888999999875
No 24
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=22.57 E-value=1.3e+02 Score=23.51 Aligned_cols=57 Identities=5% Similarity=-0.006 Sum_probs=38.1
Q ss_pred ccCCceEEeeCCCCCh--------------hHHHHHHHhcCccCCCceeEEeccc-ccccccChHHHHhhhh
Q 043596 6 QVDPTAGCNDGTDSNS--------------HHAQEALRRAKFKFPVRQKIIVSRK-WGFTKFSRANYLRCKS 62 (96)
Q Consensus 6 ~~~~~~~~vRtKd~~~--------------~~viEALRRAKfKFPGRQKI~vSkk-WGFTk~~r~ey~~~~~ 62 (96)
|.|+++.|.|.+..+. -+.+|+|.+++--|+|-+-+=|+=+ .+-+.-..+++.++.+
T Consensus 253 ~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~~~~~~~ie 324 (349)
T 2obn_A 253 QPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAAKEAIAHTI 324 (349)
T ss_dssp CCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHHHHHHHHHH
Confidence 5677899999776555 7888999999999999887766633 3333223334444443
No 25
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=22.44 E-value=77 Score=24.53 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=15.4
Q ss_pred eeccCceEEEeCCCCCCCC
Q 043596 66 IVPDGVNAKLFECHGPLAN 84 (96)
Q Consensus 66 Lv~DG~~vk~~~~~GpL~~ 84 (96)
|..++-.|-.+..|=||.+
T Consensus 174 l~~~~LrV~~vTtHipLk~ 192 (349)
T 4aty_A 174 LIGGGLRIVHATLHEGIAS 192 (349)
T ss_dssp EEETTEEEEESSCSSCHHH
T ss_pred hcCCCcceeecccccchhc
Confidence 4578888999999988864
No 26
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=21.85 E-value=50 Score=20.51 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=15.2
Q ss_pred CCChhHHHHHHHhcCccCCCc
Q 043596 18 DSNSHHAQEALRRAKFKFPVR 38 (96)
Q Consensus 18 d~~~~~viEALRRAKfKFPGR 38 (96)
..-...|++|+++++|+ |+.
T Consensus 66 ~~ld~aAl~av~~~~f~-P~~ 85 (106)
T 2k9k_A 66 RMFEREAMQALKKWKYQ-PQI 85 (106)
T ss_dssp SSSHHHHHHHHHHCCCC-CCC
T ss_pred HHHHHHHHHHHHhCCCC-CCC
Confidence 35667899999998884 753
No 27
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=20.77 E-value=34 Score=27.04 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=27.6
Q ss_pred HHHHhcCccCCCceeEEecccccccccChHHHHhhhhcCe---eeccCceEEEeCCCCCCCC
Q 043596 26 EALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSENR---IVPDGVNAKLFECHGPLAN 84 (96)
Q Consensus 26 EALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~---Lv~DG~~vk~~~~~GpL~~ 84 (96)
|||..|.|+|||+ |.|-.+.+. .+.- |..++-.|-+...|=||.+
T Consensus 130 ~~i~~aG~~f~GH-----------TE~la~~~g---~~~~~Mml~~~~LrV~lvT~HipL~~ 177 (330)
T 2hi1_A 130 EALHLAGHNYPGH-----------TELLATLTH---SRDYAMVLYTDKLKVIHVSTHIALRK 177 (330)
T ss_dssp HHHHHTTCCCSSH-----------HHHHHHHTT---CCCCEEEEECSSCEEEESCCSSCHHH
T ss_pred HHHHhcCCCCCCH-----------HHHHHHHhC---CCCeEEEEecCCcEEEEeecCccHHH
Confidence 5666678999995 333332221 0111 3467778888899988764
No 28
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=20.48 E-value=80 Score=20.46 Aligned_cols=35 Identities=11% Similarity=-0.061 Sum_probs=27.8
Q ss_pred EEeeCCCCChhHHHHHHHhcC-ccCCCceeEEeccc
Q 043596 12 GCNDGTDSNSHHAQEALRRAK-FKFPVRQKIIVSRK 46 (96)
Q Consensus 12 ~~vRtKd~~~~~viEALRRAK-fKFPGRQKI~vSkk 46 (96)
..+=+.|...+.+++|++.+- ---||-=||+|+.=
T Consensus 63 ieivv~de~v~~vv~~I~~~~~tg~~GdGkiFV~pV 98 (119)
T 2j9c_A 63 IELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPV 98 (119)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHCCSSTTCEEEEEEEE
T ss_pred EEEEEcHHHHHHHHHHHHHHhcCCCCCCEEEEEEEh
Confidence 456667889999999999864 44788889999864
Done!