Query 043596
Match_columns 96
No_of_seqs 105 out of 226
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 10:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pa2a1 d.41.4.1 (A:40-176) Ri 99.4 1.9E-13 1.4E-17 96.5 4.2 45 8-52 93-137 (137)
2 d1vqoh1 d.41.4.1 (H:1-163) Rib 97.5 2.8E-05 2E-09 55.2 3.6 34 8-41 130-163 (163)
3 d1jj2h_ d.41.4.1 (H:) Ribosoma 97.0 0.00021 1.5E-08 50.7 3.5 37 8-46 128-164 (167)
4 d1p16a2 d.142.2.3 (A:1-245) mR 77.2 2.4 0.00017 28.3 5.4 45 21-74 26-74 (245)
5 d2j01q1 d.41.4.2 (Q:6-141) Rib 65.4 1.3 9.4E-05 29.5 1.7 24 19-42 104-127 (136)
6 d2gyck1 d.41.4.2 (K:3-133) Rib 56.9 1 7.4E-05 29.9 -0.1 23 20-42 107-129 (131)
7 d1ptma_ c.77.1.3 (A:) 4-hydrox 40.8 5.1 0.00037 29.0 1.6 43 26-84 124-171 (329)
8 d2f06a1 d.58.18.11 (A:71-141) 32.9 13 0.00094 21.1 2.2 24 10-35 39-62 (71)
9 d1ckma2 d.142.2.3 (A:11-238) R 32.2 28 0.002 22.8 4.2 35 32-75 43-80 (228)
10 d2dlka1 g.37.1.1 (A:8-37) Zinc 29.5 5.6 0.00041 20.4 0.1 14 33-46 3-16 (30)
11 d2fiqa1 c.1.10.7 (A:1-420) Put 29.5 60 0.0044 24.7 6.2 50 11-63 16-70 (420)
12 d2v9va2 a.4.5.35 (A:438-510) C 27.0 27 0.002 19.3 3.0 24 57-81 49-72 (73)
13 d1u07a_ d.212.1.2 (A:) TonB {E 22.2 21 0.0016 20.5 1.9 19 20-39 53-71 (90)
14 d1lb6a_ b.8.1.1 (A:) TNF recep 21.1 14 0.00099 22.4 0.8 27 45-73 123-149 (155)
15 d1w96a1 b.84.2.1 (A:451-566) A 20.6 29 0.0021 21.6 2.4 35 3-37 48-84 (116)
No 1
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.36 E-value=1.9e-13 Score=96.53 Aligned_cols=45 Identities=56% Similarity=0.792 Sum_probs=42.8
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeEEeccccccccc
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRKWGFTKF 52 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~ 52 (96)
.-+++.|++.+.|.+.|.||||+|.+|+|++.||+||+|||||+|
T Consensus 93 G~ilfEi~g~~~~~~~Ak~ALr~Aa~KLP~~tkIvv~kk~gf~~~ 137 (137)
T d2pa2a1 93 GQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKF 137 (137)
T ss_dssp TBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESCCCCCBC
T ss_pred CcEEEEEeecccCHHHHHHHHHHHhccCCCcEEEEEecccccccC
Confidence 347899999999999999999999999999999999999999987
No 2
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=97.53 E-value=2.8e-05 Score=55.18 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=31.4
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeE
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKI 41 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI 41 (96)
.-++++|++.++|.++|+||||+|.+|||.+-+|
T Consensus 130 G~ilfei~~~~~~~~~akeALr~A~~KLP~~tkI 163 (163)
T d1vqoh1 130 GEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI 163 (163)
T ss_dssp TCEEEEEEECSTTHHHHHHHHHHHGGGSSSCEEE
T ss_pred CCEEEEEEeccccHHHHHHHHHHHhccCCCceEC
Confidence 4578999999999999999999999999998876
No 3
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=97.01 E-value=0.00021 Score=50.73 Aligned_cols=37 Identities=24% Similarity=0.066 Sum_probs=31.4
Q ss_pred CCceEEeeCCCCChhHHHHHHHhcCccCCCceeEEeccc
Q 043596 8 DPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRK 46 (96)
Q Consensus 8 ~~~~~~vRtKd~~~~~viEALRRAKfKFPGRQKI~vSkk 46 (96)
.-++++|.+.+. ++|.||||+|++|+|.+-||.++..
T Consensus 128 G~ilfei~~~~e--~~akeALr~A~~KLP~~~kI~~~p~ 164 (167)
T d1jj2h_ 128 ANHIFIAWVNPD--PNVEEAWRRAKMKVTPTINIDSSPA 164 (167)
T ss_dssp TCEEEEEEESSC--CCHHHHHHHHTTSSSSCEEEEECSC
T ss_pred CCEEEEEecCCH--HHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 346888988754 6899999999999999999998853
No 4
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]}
Probab=77.24 E-value=2.4 Score=28.28 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=30.7
Q ss_pred hhHHHHHHHhcCccCCCceeEEecccccccccChHHHHh-hhhcCeee---ccCceEE
Q 043596 21 SHHAQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLR-CKSENRIV---PDGVNAK 74 (96)
Q Consensus 21 ~~~viEALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~-~~~eg~Lv---~DG~~vk 74 (96)
+..|-|-|-|-+-.|||-|-|-+|+ +.+.+ +..+..++ .||.-+.
T Consensus 26 ~~~v~~~~~~~~~~FpG~qPvs~~~---------~~~~~~L~~~~Y~v~eK~DG~R~l 74 (245)
T d1p16a2 26 RLMVAELLGRRNTGFPGSQPVSFER---------RHLEETLMQKDYFVCEKTDGLRCL 74 (245)
T ss_dssp HHHHHHHHTCSCCSCCCEEEEECCH---------HHHHTHHHHSCEEEEEEECSEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCcccccH---------HHHHhhhCcCCEEEEECcCCeEEE
Confidence 3446677777788899999996554 55654 55556665 6776654
No 5
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}
Probab=65.37 E-value=1.3 Score=29.50 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=20.8
Q ss_pred CChhHHHHHHHhcCccCCCceeEE
Q 043596 19 SNSHHAQEALRRAKFKFPVRQKII 42 (96)
Q Consensus 19 ~~~~~viEALRRAKfKFPGRQKI~ 42 (96)
-+...|.|||+.|..|+|.+=+++
T Consensus 104 v~~~~a~~al~~a~~KLP~k~k~V 127 (136)
T d2j01q1 104 VTEEQAMEALRIAGHKLPIKTKIV 127 (136)
T ss_dssp SCHHHHHHHHHHHHHHSSSCEEEE
T ss_pred CCHHHHHHHHHHHHhhCCCcEEEE
Confidence 356789999999999999988873
No 6
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}
Probab=56.95 E-value=1 Score=29.86 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.6
Q ss_pred ChhHHHHHHHhcCccCCCceeEE
Q 043596 20 NSHHAQEALRRAKFKFPVRQKII 42 (96)
Q Consensus 20 ~~~~viEALRRAKfKFPGRQKI~ 42 (96)
+...|.|||+.|.+|+|.+=+++
T Consensus 107 ~e~~a~~al~~aa~KLP~k~k~i 129 (131)
T d2gyck1 107 PEELAREAFKLAAAKLPIKTTFV 129 (131)
T ss_dssp SCCSSHHHHHHHTTTSSSCBCCC
T ss_pred CHHHHHHHHHHHHhhCCCcEEEE
Confidence 56779999999999999987664
No 7
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]}
Probab=40.81 E-value=5.1 Score=28.98 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=28.2
Q ss_pred HHHHhcCccCCCceeEEecccccccccChHHHHhhhhcC-e----eeccCceEEEeCCCCCCCC
Q 043596 26 EALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSEN-R----IVPDGVNAKLFECHGPLAN 84 (96)
Q Consensus 26 EALRRAKfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg-~----Lv~DG~~vk~~~~~GpL~~ 84 (96)
|+|..|.|+|||+- ||..-+... . |..++-.|-.+..|=||.+
T Consensus 124 ~~i~~ag~~f~GHT----------------E~La~~~~~~~~~Mml~~~~L~V~~vTtHipLk~ 171 (329)
T d1ptma_ 124 GVINDAGIPFTGHT----------------EFFEERSQAKKVVMMLATEELRVALATTHLPLRD 171 (329)
T ss_dssp HHHHHTTCCCCCHH----------------HHHHHHTTCSCCEEEEESSSCEEEESSCSSCGGG
T ss_pred hhhhhcCCccceee----------------eehhccccccchHHHHHhhhhheeeeeecchhhh
Confidence 45666789999953 333222111 1 2477888999999999976
No 8
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=32.90 E-value=13 Score=21.13 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=18.0
Q ss_pred ceEEeeCCCCChhHHHHHHHhcCccC
Q 043596 10 TAGCNDGTDSNSHHAQEALRRAKFKF 35 (96)
Q Consensus 10 ~~~~vRtKd~~~~~viEALRRAKfKF 35 (96)
.++-+|+ .+-+.|+|+|+.+.|++
T Consensus 39 ~~~vl~v--dd~~~a~~~L~~~G~~v 62 (71)
T d2f06a1 39 ANVVIRP--SNMDKCIEVLKEKKVDL 62 (71)
T ss_dssp EEEEEEE--SCHHHHHHHHHHTTCEE
T ss_pred EEEEEEE--CCHHHHHHHHHHCCCEE
Confidence 3455666 46789999999998764
No 9
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]}
Probab=32.25 E-value=28 Score=22.79 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=23.4
Q ss_pred CccCCCceeEEecccccccccChHHHHhhhhcCeee---ccCceEEE
Q 043596 32 KFKFPVRQKIIVSRKWGFTKFSRANYLRCKSENRIV---PDGVNAKL 75 (96)
Q Consensus 32 KfKFPGRQKI~vSkkWGFTk~~r~ey~~~~~eg~Lv---~DG~~vk~ 75 (96)
+..|||.|.+-++ +.....+..+..++ .||..+.+
T Consensus 43 ~~~f~g~~pvsl~---------~~~~~~l~~~~Y~vseK~DG~R~ll 80 (228)
T d1ckma2 43 FPRLPGPNPVSIE---------RKDFEKLKQNKYVVSEKTDGIRFMM 80 (228)
T ss_dssp SCCCSSEEEEECC---------GGGHHHHHHSCEEEEEEECSEEEEE
T ss_pred CCcCCCCCCcccc---------hHHHhhhccCCeEEEEeecCEEEEE
Confidence 4569999999554 45666676666664 67765443
No 10
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.53 E-value=5.6 Score=20.38 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=10.9
Q ss_pred ccCCCceeEEeccc
Q 043596 33 FKFPVRQKIIVSRK 46 (96)
Q Consensus 33 fKFPGRQKI~vSkk 46 (96)
..|||.-||+-++.
T Consensus 3 cdf~gc~kifsnrq 16 (30)
T d2dlka1 3 CDFPGCGRIFSNRQ 16 (30)
T ss_dssp CSSTTTCCEESSHH
T ss_pred CCCCCchhhhccHH
Confidence 36999999976654
No 11
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1 GatZ {Escherichia coli [TaxId: 562]}
Probab=29.49 E-value=60 Score=24.73 Aligned_cols=50 Identities=14% Similarity=-0.001 Sum_probs=32.4
Q ss_pred eEEeeCCCCChhHHHHHHHhcCcc-CCCceeEEecc----cccccccChHHHHhhhhc
Q 043596 11 AGCNDGTDSNSHHAQEALRRAKFK-FPVRQKIIVSR----KWGFTKFSRANYLRCKSE 63 (96)
Q Consensus 11 ~~~vRtKd~~~~~viEALRRAKfK-FPGRQKI~vSk----kWGFTk~~r~ey~~~~~e 63 (96)
+.||.| +|...+.-||+.|+-+ +|= =.+--|+ .-|+|.++..+|.+...+
T Consensus 16 i~SvCs--a~p~Vi~Aal~~a~~~~~pv-lieAT~NQVnq~GGYtGmtp~dF~~~V~~ 70 (420)
T d2fiqa1 16 ICSVCS--AHPLVIEAALAFDRNSTRKV-LIEATSNQVNQFGGYTGMTPADFREFVFA 70 (420)
T ss_dssp EEEECC--CCHHHHHHHHHHTTTSCCCE-EEEEETTTBSTTCTTTTBCHHHHHHHHHH
T ss_pred eeeeCC--CCHHHHHHHHHHHHhcCCCE-EEEecccccccCCCCCCCCHHHHHHHHHH
Confidence 456665 4556666679998765 441 1111222 349999999999988764
No 12
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=26.99 E-value=27 Score=19.33 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=18.6
Q ss_pred HHhhhhcCeeeccCceEEEeCCCCC
Q 043596 57 YLRCKSENRIVPDGVNAKLFECHGP 81 (96)
Q Consensus 57 y~~~~~eg~Lv~DG~~vk~~~~~Gp 81 (96)
...|.++|.|+.+|..|. ++++-|
T Consensus 49 L~~l~~~g~l~~~g~~v~-L~~f~p 72 (73)
T d2v9va2 49 LEEWSREGRLQLAANTVA-LAGFTP 72 (73)
T ss_dssp HHHHHHTTSEEECSSEEE-ETTCCC
T ss_pred HHHHHHCCChheeCCEEE-CCCCCC
Confidence 356789999999999887 555544
No 13
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Probab=22.18 E-value=21 Score=20.46 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=15.4
Q ss_pred ChhHHHHHHHhcCccCCCce
Q 043596 20 NSHHAQEALRRAKFKFPVRQ 39 (96)
Q Consensus 20 ~~~~viEALRRAKfKFPGRQ 39 (96)
-...|++|+++++|+ ||.+
T Consensus 53 ld~aa~~av~~~~f~-P~~~ 71 (90)
T d1u07a_ 53 FEREVKNAMRRWRYE-PGKP 71 (90)
T ss_dssp SHHHHHHHHTTCEEC-TTCC
T ss_pred HHHHHHHHHHhCCCC-CCCC
Confidence 578999999999886 6654
No 14
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.06 E-value=14 Score=22.36 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=18.7
Q ss_pred ccccccccChHHHHhhhhcCeeeccCceE
Q 043596 45 RKWGFTKFSRANYLRCKSENRIVPDGVNA 73 (96)
Q Consensus 45 kkWGFTk~~r~ey~~~~~eg~Lv~DG~~v 73 (96)
..|||.+|-.-+.+ .++|.|+.|-..+
T Consensus 123 ~~~G~~~fi~~~~L--~~~gyl~dD~l~I 149 (155)
T d1lb6a_ 123 KGFGYVTFMHLEAL--RQRTFIKDDTLLV 149 (155)
T ss_dssp EEEEEEEEEEGGGG--GTSCCCBTTBEEE
T ss_pred CCcChHHeeEHHHh--ccCCCEECCEEEE
Confidence 35999998776665 3678887665443
No 15
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.59 E-value=29 Score=21.55 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=27.9
Q ss_pred CCCccCCceEEeeCCCCChhHHHHHHHhc--CccCCC
Q 043596 3 PSMQVDPTAGCNDGTDSNSHHAQEALRRA--KFKFPV 37 (96)
Q Consensus 3 ~~~~~~~~~~~vRtKd~~~~~viEALRRA--KfKFPG 37 (96)
.|...||.+.-|=+...+++.|++-|+|| .+..-|
T Consensus 48 v~~~YDsmlAKlI~~g~~R~~Ai~rl~~aL~e~~I~G 84 (116)
T d1w96a1 48 IHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRG 84 (116)
T ss_dssp SCSSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTCC
T ss_pred cccccChHHHHHHHHhccHHHHHHHHHHHHHhceEec
Confidence 46778999888888888999999999988 444444
Done!