RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043596
         (96 letters)



>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 137

 Score = 68.3 bits (167), Expect = 6e-17
 Identities = 25/38 (65%), Positives = 27/38 (71%)

Query: 15  DGTDSNSHHAQEALRRAKFKFPVRQKIIVSRKWGFTKF 52
                N  H  EALRRAKFKFP RQKI +S+KWGFTKF
Sbjct: 100 RTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKF 137


>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 167

 Score = 41.3 bits (97), Expect = 2e-06
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 20  NSHHAQEALRRAKFKFPVRQKIIVS 44
              + +EA RRAK K      I  S
Sbjct: 138 PDPNVEEAWRRAKMKVTPTINIDSS 162


>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 163

 Score = 38.7 bits (90), Expect = 2e-05
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 15  DGTDSNSHHAQEALRRAKFKFPVRQKI 41
                ++ H +EA RRA  K     +I
Sbjct: 137 YCNVEDAEHVKEAFRRAYNKITPSCRI 163


>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
           [TaxId: 562]}
          Length = 131

 Score = 28.2 bits (63), Expect = 0.089
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 24  AQEALRRAKFKFPVRQKIIV 43
           A+EA + A  K P++   + 
Sbjct: 111 AREAFKLAAAKLPIKTTFVT 130


>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
           thermophilus [TaxId: 274]}
          Length = 136

 Score = 27.9 bits (62), Expect = 0.12
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 24  AQEALRRAKFKFPVRQKIIV 43
           A EALR A  K P++ KI+ 
Sbjct: 109 AMEALRIAGHKLPIKTKIVR 128


>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 88

 Score = 24.0 bits (52), Expect = 2.1
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 30 RAKFKFPVRQKIIVSRKWGFTKFSRAN 56
          +  F+F  + K  ++ +WG  K +R  
Sbjct: 28 KGTFQFSSKHKEALAHRWGIQKGNRKK 54


>d2c8aa1 d.166.1.1 (A:45-251) Exoenzyme c3 {Clostridium botulinum
           [TaxId: 1491]}
          Length = 207

 Score = 23.9 bits (51), Expect = 3.5
 Identities = 11/64 (17%), Positives = 19/64 (29%)

Query: 12  GCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSENRIVPDGV 71
           G  +G  SN     E L ++  K    + I++ R                + N  +    
Sbjct: 51  GVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTA 110

Query: 72  NAKL 75
             K 
Sbjct: 111 FEKA 114


>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5
           {Haemophilus influenzae [TaxId: 727]}
          Length = 163

 Score = 23.7 bits (50), Expect = 4.0
 Identities = 12/73 (16%), Positives = 19/73 (26%)

Query: 5   MQVDPTAGCNDGTDSNSHHAQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSEN 64
           +        ND    N+    E      F      +          K       R    +
Sbjct: 67  VDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYS 126

Query: 65  RIVPDGVNAKLFE 77
            +V +GV  K+F 
Sbjct: 127 MLVKNGVVEKMFI 139


>d1tme1_ b.121.4.1 (1:) Theilovirus capsid proteins {Theiler's
           murine encephalomyelitis virus, strain da [TaxId:
           12124]}
          Length = 256

 Score = 23.7 bits (51), Expect = 5.2
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 38  RQKIIVSRKWGFTKFSRANYLRCKSENRIVPDGVNA 73
              ++  + + F  FS   Y +C  E  +   G + 
Sbjct: 103 NFPLMTKQDYAFLCFSPFTYYKCDLEVTVSALGTDT 138


>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
          {Pseudomonas sp., strain 101 [TaxId: 306]}
          Length = 186

 Score = 23.4 bits (50), Expect = 6.4
 Identities = 5/27 (18%), Positives = 12/27 (44%)

Query: 68 PDGVNAKLFECHGPLANRQPGRAFLEA 94
          P  ++    +  G ++     R +LE+
Sbjct: 39 PKAIDFTPGQLLGSVSGELGLRKYLES 65


>d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat
           proteins {Mengovirus [TaxId: 12107]}
          Length = 268

 Score = 23.4 bits (50), Expect = 6.6
 Identities = 8/33 (24%), Positives = 13/33 (39%)

Query: 41  IIVSRKWGFTKFSRANYLRCKSENRIVPDGVNA 73
           +   + + F  FS   Y +C  E  + P    A
Sbjct: 106 LKTKQDYSFCLFSPFVYYKCDLEVTLSPHTSGA 138


>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
           thermophilus [TaxId: 274]}
          Length = 382

 Score = 22.8 bits (48), Expect = 9.0
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 24  AQEALRRAKFKFPVRQKIIVSRKWGFTKFSRANYLRCKSENRIVPDGVNAKLFECHGPLA 83
           A+ AL + K K+     I   R+    KF R N L    E  IV  G +  LF     + 
Sbjct: 53  ARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL 112

Query: 84  NRQPGRAFL 92
           +  PG   +
Sbjct: 113 D--PGDEVI 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 362,682
Number of extensions: 13868
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 13
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)