BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043597
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 181/319 (56%), Gaps = 13/319 (4%)
Query: 25 VGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVPNE 84
+G+ YG G+NLP P +V+ SN I +R+YD N L+AL +N+ V + VP
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYK---SNNIARMRLYDPNQAALQALRNSNIQVLLDVPRS 57
Query: 85 AINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGI-LATCVEPAIMNLHNSV 143
+ +AS+ AA W++ +++ Y V FRY+ VGNE+IPG LA + PA+ N++N++
Sbjct: 58 DVQSLASNPSAAGDWIRRNVVAY-WPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNAL 116
Query: 144 RKAGY-DFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINVYPY 202
AG + I V+TAV VLGTSYPPS G F+ +S I L S G+PLL+NVYPY
Sbjct: 117 SSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPY 176
Query: 203 YALVEDPVHIPFEYALFT-SRTPIRDGHLEYYNLXXXXXXXXXXXXXXXXQREDVKLVVS 261
++ +P I YALFT S ++DG Y NL +V +VVS
Sbjct: 177 FSYTGNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVG-GANVAVVVS 235
Query: 262 ETGWPTDGRIGYAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNEDLKTPEE 321
E+GWP+ G A T A+TYN L H V G TPR+ +E YIF MFNE+ K
Sbjct: 236 ESGWPSAGGGAEASTSNAQTYNQNLIRH--VGGGTPRRPGKEIEAYIFEMFNENQKAGGI 293
Query: 322 EKNFGTFYPNFTEKYPLWR 340
E+NFG FYPN K P+++
Sbjct: 294 EQNFGLFYPN---KQPVYQ 309
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 207 bits (527), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 181/321 (56%), Gaps = 16/321 (4%)
Query: 25 VGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVPNE 84
VG+ YG +G+NLP +VI K+ I +RIYD N +LEAL G+N+ + +GVPN
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKS---NITRMRIYDPNQAVLEALRGSNIELILGVPNS 58
Query: 85 AINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIP-----GILATCVEPAIMNL 139
+ + + +A WVQ ++ + VRFRY+ VGNE+ P LA V PA+ N+
Sbjct: 59 DLQSLTNPSNA-KSWVQKNVRGFW-SSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNI 116
Query: 140 HNSVRKAGY-DFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLIN 198
H+++R AG D I V+TA+ ++G SYPPS G F DV ++ I L S+ SPLL N
Sbjct: 117 HDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLAN 176
Query: 199 VYPYYALVEDPVHIPFEYALFTSRT-PIRDGHLEYYNLXXXXXXXXXXXXXXXXQREDVK 257
+YPY+ +P I YALFTS + + DG Y NL ++
Sbjct: 177 IYPYFTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASG-GSLE 235
Query: 258 LVVSETGWPTDGRIGYAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNEDLK 317
+VVSE+GWP+ G A D RTY + L +H V TP++ +E Y+FAMF+E+ K
Sbjct: 236 VVVSESGWPSAGAFA-ATFDNGRTYLSNLIQH--VKRGTPKRPKRAIETYLFAMFDENKK 292
Query: 318 TPEEEKNFGTFYPNFTEKYPL 338
PE EK+FG F+PN +KY L
Sbjct: 293 QPEVEKHFGLFFPNKWQKYNL 313
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 165/315 (52%), Gaps = 12/315 (3%)
Query: 25 VGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVPNE 84
+G+ YG +NLP+ V+ SN I +R+Y N L+A+ GT + V +G PN+
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFK---SNGIKSMRLYAPNQAALQAVGGTGINVVVGAPND 57
Query: 85 AINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGILATCVEPAIMNLHNSVR 144
++ +A+S AA WV+ +I Y + V FRY+CVGNEV G V PA+ N+H ++
Sbjct: 58 VLSNLAASPAAAASWVKSNIQAYPK--VSFRYVCVGNEVAGGATRNLV-PAMKNVHGALV 114
Query: 145 KAGYDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINVYPYYA 204
AG I VTT+V+ +LG PPS G F + A M + L +PL+ N+YPY A
Sbjct: 115 AAGLGHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLA 174
Query: 205 LVEDPVHIPFEYALF-TSRTPIRDGHLEYYNLXXXXXXXXXXXXXXXXQREDVKLVVSET 263
+P + YALF S T +RDG Y NL VKLVVSE+
Sbjct: 175 WAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGG-SSVKLVVSES 233
Query: 264 GWPTDGRIGYAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNEDLKTPEEEK 323
GWP+ G A AR YN L H V TPR +E YIFAMFNE+ K E+
Sbjct: 234 GWPSGGGTA-ATPANARFYNQHLINH--VGRGTPRHPGA-IETYIFAMFNENQKDSGVEQ 289
Query: 324 NFGTFYPNFTEKYPL 338
N+G FYPN YP+
Sbjct: 290 NWGLFYPNMQHVYPI 304
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 169/320 (52%), Gaps = 16/320 (5%)
Query: 25 VGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVPNE 84
+G+ YG+ +NLPS + VI +N I +RIY + + AL G+N+ + + VPN+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYN---ANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQ 59
Query: 85 AINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPG----ILATCVEPAIMNLH 140
+ +A+ +A + WVQD+I + V+F+Y+ VGNEV PG A V PA+ N++
Sbjct: 60 DLEALANPSNA-NGWVQDNIRNHF-PDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIY 117
Query: 141 NSVRKAG-YDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINV 199
N++ AG + I V+T+ + +L +YPP F + ++ I L PLL N+
Sbjct: 118 NALSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANI 177
Query: 200 YPYYALVEDPVHIPFEYALFTSRTPIRDGHLEYYNLXXXXXXXXXXXXXXXXQREDVKLV 259
YPY+ +++ +P YALF + R Y NL ++++++
Sbjct: 178 YPYFGHIDNTNAVPLSYALFNQQ---RRNDTGYQNLFDALVDSMYFATEKLGG-QNIEII 233
Query: 260 VSETGWPTDGRIGYAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNEDLKTP 319
VSE+GWP++G + + ARTY L H TP+K +E Y+FAMF+E+ K
Sbjct: 234 VSESGWPSEGHPAATLKN-ARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKG 292
Query: 320 E-EEKNFGTFYPNFTEKYPL 338
E EK+FG F P+ KY L
Sbjct: 293 EASEKHFGLFNPDQRPKYQL 312
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 168/320 (52%), Gaps = 16/320 (5%)
Query: 25 VGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVPNE 84
+G+ YG+ +NLPS + VI +N I +RIY + + AL G+N+ + + VPN+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYN---ANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQ 59
Query: 85 AINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPG----ILATCVEPAIMNLH 140
+ +A+ +A + WVQD+I + V+F+Y+ VGNEV PG A V PA+ N++
Sbjct: 60 DLEALANPSNA-NGWVQDNIRNHF-PDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIY 117
Query: 141 NSVRKAG-YDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINV 199
N++ AG + I V+T+ + +L +YPP F + ++ I L PLL N+
Sbjct: 118 NALSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANI 177
Query: 200 YPYYALVEDPVHIPFEYALFTSRTPIRDGHLEYYNLXXXXXXXXXXXXXXXXQREDVKLV 259
YPY+ +++ +P YALF + R Y NL ++++++
Sbjct: 178 YPYFGHIDNTNAVPLSYALFNQQ---RRNDTGYQNLFDALVDSMYFATEKLGG-QNIEII 233
Query: 260 VSETGWPTDGRIGYAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNEDLKTP 319
VS +GWP++G + + ARTY L H TP+K +E Y+FAMF+E+ K
Sbjct: 234 VSASGWPSEGHPAATLKN-ARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKG 292
Query: 320 E-EEKNFGTFYPNFTEKYPL 338
E EK+FG F P+ KY L
Sbjct: 293 EASEKHFGLFNPDQRPKYQL 312
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 171/318 (53%), Gaps = 22/318 (6%)
Query: 25 VGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDANIEILEAL--SGTNLVVTIGVP 82
+G+ YG G+NLPS V+ S I +RIY A+ + L AL SG L++ IG
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYR---SKGINGMRIYFADGQALSALRNSGIGLILDIG-- 55
Query: 83 NEAINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGILATCVEPAIMNLHNS 142
N+ + +A+S A WVQ+++ Y V +Y+ GNEV G + + PA+ NL+ +
Sbjct: 56 NDQLANIAASTSNAASWVQNNVRPYY-PAVNIKYIAAGNEVQGGATQSIL-PAMRNLNAA 113
Query: 143 VRKAGYDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINVYPY 202
+ AG I V+T++ + + S+PPS G F M+ + L S G+PLL NVYPY
Sbjct: 114 LSAAGLGAIKVSTSIRFDEVANSFPPSAGVFK---NAYMTDVARLLASTGAPLLANVYPY 170
Query: 203 YALVEDPVHIPFEYALFTSRTPIRDGH--LEYYNLXXXXXXXXXXXXXXXXQREDVKLVV 260
+A ++P I YA F T +RD + L Y +L VK+VV
Sbjct: 171 FAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGA-PAVKVVV 229
Query: 261 SETGWPTDGRIGYAIT-DYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNEDLKTP 319
SE+GWP+ G G+A + ARTYN L H V G TP+K + LE YIFAMFNE+ KT
Sbjct: 230 SESGWPSAG--GFAASAGNARTYNQGLINH--VGGGTPKKREA-LETYIFAMFNENQKTG 284
Query: 320 EE-EKNFGTFYPNFTEKY 336
+ E++FG F P+ + Y
Sbjct: 285 DATERSFGLFNPDKSPAY 302
>pdb|3KOW|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOX|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOY|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOZ|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KP0|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP1|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
Length = 763
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 36 LPSPKQVIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVP 82
LP+ K+V +F F+ K+ L + N E+++ GT + + VP
Sbjct: 526 LPTSKRVAEFAAIEFAKKMNLEEVEVINREVMQEAEGTRIELKGRVP 572
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,167,460
Number of Sequences: 62578
Number of extensions: 415061
Number of successful extensions: 1010
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 8
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)