Query 043597
Match_columns 340
No_of_seqs 171 out of 1225
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.9E-86 4.2E-91 636.3 23.7 306 25-339 1-309 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3.1E-48 6.7E-53 354.9 22.1 249 21-332 42-305 (305)
3 PF03198 Glyco_hydro_72: Gluca 99.3 2.3E-11 5E-16 115.9 15.4 233 25-333 30-294 (314)
4 PF07745 Glyco_hydro_53: Glyco 99.1 1E-08 2.2E-13 99.7 21.3 240 39-338 26-329 (332)
5 COG3867 Arabinogalactan endo-1 98.6 5.6E-06 1.2E-10 78.4 18.0 243 39-338 65-388 (403)
6 PRK10150 beta-D-glucuronidase; 98.3 0.00035 7.6E-09 73.4 25.2 253 25-337 295-584 (604)
7 PF00150 Cellulase: Cellulase 98.2 0.00023 4.9E-09 66.3 18.8 120 24-149 10-165 (281)
8 smart00633 Glyco_10 Glycosyl h 97.7 0.0045 9.7E-08 58.0 18.7 79 244-338 172-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.3 0.012 2.5E-07 54.9 15.9 163 112-334 64-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 97.1 0.035 7.7E-07 53.0 17.5 96 24-123 17-132 (298)
11 TIGR03356 BGL beta-galactosida 96.3 1.1 2.3E-05 45.4 21.6 45 40-87 57-120 (427)
12 PRK09936 hypothetical protein; 92.0 1.3 2.9E-05 42.4 9.9 79 24-102 21-115 (296)
13 PF01229 Glyco_hydro_39: Glyco 90.7 20 0.00043 36.8 17.8 248 40-335 43-350 (486)
14 PF02449 Glyco_hydro_42: Beta- 87.1 2.9 6.3E-05 41.2 8.5 82 40-125 13-140 (374)
15 PF00232 Glyco_hydro_1: Glycos 85.0 0.42 9.1E-06 48.7 1.3 277 40-336 61-441 (455)
16 cd02875 GH18_chitobiase Chitob 81.9 22 0.00047 35.1 11.9 132 53-204 55-191 (358)
17 PRK13511 6-phospho-beta-galact 79.3 2.9 6.3E-05 42.9 4.9 46 40-88 57-121 (469)
18 PF03662 Glyco_hydro_79n: Glyc 78.7 7.6 0.00017 37.9 7.4 174 66-271 114-301 (319)
19 cd02874 GH18_CFLE_spore_hydrol 77.3 25 0.00054 33.6 10.5 83 64-148 48-138 (313)
20 PRK09593 arb 6-phospho-beta-gl 73.0 7.6 0.00016 40.0 6.0 72 256-333 369-448 (478)
21 PLN02998 beta-glucosidase 70.9 5.4 0.00012 41.3 4.4 73 253-333 390-466 (497)
22 PRK09525 lacZ beta-D-galactosi 70.7 46 0.00099 37.7 11.9 97 25-125 353-465 (1027)
23 PLN02814 beta-glucosidase 70.7 5.6 0.00012 41.3 4.5 73 253-333 385-461 (504)
24 PRK10340 ebgA cryptic beta-D-g 69.0 42 0.00092 37.9 11.2 98 25-126 337-453 (1021)
25 smart00481 POLIIIAc DNA polyme 67.6 18 0.00038 26.2 5.5 44 37-83 15-63 (67)
26 cd00598 GH18_chitinase-like Th 66.3 39 0.00085 29.7 8.6 81 66-148 54-142 (210)
27 PLN02849 beta-glucosidase 65.3 8.6 0.00019 39.9 4.5 73 253-333 383-461 (503)
28 COG4782 Uncharacterized protei 64.5 24 0.00053 35.1 7.2 39 252-293 144-187 (377)
29 PRK09589 celA 6-phospho-beta-g 64.3 19 0.00041 37.1 6.8 46 40-88 70-135 (476)
30 PRK15014 6-phospho-beta-glucos 64.1 9.3 0.0002 39.4 4.5 73 255-333 368-448 (477)
31 PRK09852 cryptic 6-phospho-bet 61.4 16 0.00035 37.6 5.7 71 256-333 366-444 (474)
32 KOG0626 Beta-glucosidase, lact 52.5 33 0.00073 35.7 6.1 73 252-331 404-486 (524)
33 PF05990 DUF900: Alpha/beta hy 51.4 75 0.0016 29.2 7.9 38 252-292 46-88 (233)
34 PF00925 GTP_cyclohydro2: GTP 50.8 19 0.00042 31.6 3.7 38 42-82 131-168 (169)
35 cd02872 GH18_chitolectin_chito 48.8 1.1E+02 0.0023 29.9 8.9 72 73-146 69-150 (362)
36 PF14587 Glyco_hydr_30_2: O-Gl 48.1 3E+02 0.0066 27.7 13.0 93 65-158 108-227 (384)
37 TIGR00505 ribA GTP cyclohydrol 46.2 30 0.00064 31.1 4.2 33 43-78 131-163 (191)
38 PRK00393 ribA GTP cyclohydrola 45.2 31 0.00067 31.2 4.2 33 43-78 134-166 (197)
39 cd06545 GH18_3CO4_chitinase Th 44.0 93 0.002 28.7 7.3 81 65-148 50-133 (253)
40 PF02055 Glyco_hydro_30: O-Gly 43.8 3.9E+02 0.0085 27.7 12.7 59 97-155 207-278 (496)
41 TIGR01233 lacG 6-phospho-beta- 43.6 45 0.00098 34.2 5.5 46 40-88 56-120 (467)
42 PF02449 Glyco_hydro_42: Beta- 43.1 3.2E+02 0.0068 26.8 11.3 56 128-202 207-262 (374)
43 COG2159 Predicted metal-depend 41.5 1.4E+02 0.0031 28.5 8.4 97 133-271 112-210 (293)
44 smart00636 Glyco_18 Glycosyl h 41.4 1.8E+02 0.0038 27.8 9.1 78 67-146 57-142 (334)
45 KOG0078 GTP-binding protein SE 41.3 85 0.0019 28.8 6.3 63 55-124 61-128 (207)
46 PF01055 Glyco_hydro_31: Glyco 37.9 2E+02 0.0043 28.8 9.2 132 128-311 41-178 (441)
47 PF04909 Amidohydro_2: Amidohy 36.7 77 0.0017 28.6 5.5 54 132-199 83-137 (273)
48 PF14871 GHL6: Hypothetical gl 35.7 81 0.0018 26.6 5.0 43 38-83 1-66 (132)
49 cd00641 GTP_cyclohydro2 GTP cy 35.4 53 0.0012 29.4 4.1 36 43-81 133-168 (193)
50 PRK14330 (dimethylallyl)adenos 35.4 4.8E+02 0.01 26.2 13.4 73 114-204 250-331 (434)
51 PHA02754 hypothetical protein; 35.2 39 0.00085 24.7 2.5 26 131-156 15-42 (67)
52 COG3858 Predicted glycosyl hyd 34.6 1.6E+02 0.0035 29.9 7.6 90 63-157 149-248 (423)
53 PF13547 GTA_TIM: GTA TIM-barr 34.3 70 0.0015 30.8 4.8 83 111-206 17-113 (299)
54 cd06598 GH31_transferase_CtsZ 34.2 4.3E+02 0.0093 25.4 10.8 71 128-205 22-96 (317)
55 TIGR03632 bact_S11 30S ribosom 34.0 93 0.002 25.3 5.0 37 40-79 50-91 (108)
56 cd02876 GH18_SI-CLP Stabilin-1 34.0 4.2E+02 0.0092 25.2 12.6 83 64-148 54-148 (318)
57 PRK09989 hypothetical protein; 32.9 3.9E+02 0.0084 24.5 10.2 51 25-79 4-58 (258)
58 PRK13347 coproporphyrinogen II 32.9 56 0.0012 33.2 4.3 27 128-154 261-287 (453)
59 cd01543 PBP1_XylR Ligand-bindi 32.7 3.6E+02 0.0079 24.1 9.8 100 39-160 97-210 (265)
60 PF00331 Glyco_hydro_10: Glyco 32.6 63 0.0014 31.3 4.4 216 65-336 63-311 (320)
61 PF00704 Glyco_hydro_18: Glyco 32.5 2.8E+02 0.0061 26.2 8.9 113 71-204 70-196 (343)
62 PRK12485 bifunctional 3,4-dihy 32.1 52 0.0011 32.9 3.7 32 43-78 331-362 (369)
63 COG1433 Uncharacterized conser 31.1 95 0.0021 26.0 4.6 40 40-82 55-94 (121)
64 PRK14336 (dimethylallyl)adenos 30.1 5.8E+02 0.013 25.6 12.7 138 36-203 152-314 (418)
65 PF14488 DUF4434: Domain of un 29.9 46 0.001 29.2 2.7 20 65-84 69-88 (166)
66 TIGR01125 MiaB-like tRNA modif 29.9 4E+02 0.0086 26.8 9.8 141 37-206 164-328 (430)
67 PF15560 Imm8: Immunity protei 29.5 1.3E+02 0.0029 25.4 5.1 58 114-176 4-68 (133)
68 PRK14019 bifunctional 3,4-dihy 29.5 61 0.0013 32.3 3.7 35 43-81 328-362 (367)
69 KOG1412 Aspartate aminotransfe 29.0 1.8E+02 0.004 28.7 6.7 54 128-191 317-371 (410)
70 PRK14328 (dimethylallyl)adenos 28.8 6.1E+02 0.013 25.5 12.3 139 37-205 176-339 (439)
71 KOG0093 GTPase Rab3, small G p 28.6 1.2E+02 0.0027 26.6 4.9 60 56-124 71-137 (193)
72 COG0621 MiaB 2-methylthioadeni 28.0 6.7E+02 0.015 25.7 13.2 134 24-207 195-339 (437)
73 PF06117 DUF957: Enterobacteri 27.8 86 0.0019 23.3 3.3 40 94-146 11-55 (65)
74 TIGR03628 arch_S11P archaeal r 27.7 1.3E+02 0.0029 24.9 4.9 37 40-79 53-102 (114)
75 PRK09997 hydroxypyruvate isome 27.6 4.8E+02 0.01 23.8 11.1 49 27-79 6-58 (258)
76 PRK08815 GTP cyclohydrolase; P 27.6 79 0.0017 31.6 4.2 37 43-82 305-341 (375)
77 PF02811 PHP: PHP domain; Int 27.5 1.3E+02 0.0028 25.2 5.1 44 37-83 16-64 (175)
78 PRK09318 bifunctional 3,4-dihy 27.5 80 0.0017 31.7 4.2 37 43-82 320-356 (387)
79 PLN03059 beta-galactosidase; P 27.1 9.2E+02 0.02 27.0 14.7 117 38-158 57-223 (840)
80 PF00411 Ribosomal_S11: Riboso 27.0 1.5E+02 0.0032 24.2 5.0 36 41-79 51-91 (110)
81 PRK09314 bifunctional 3,4-dihy 26.6 80 0.0017 31.2 3.9 34 42-78 300-334 (339)
82 cd04743 NPD_PKS 2-Nitropropane 26.5 3.6E+02 0.0078 26.4 8.4 58 22-83 55-112 (320)
83 PRK09311 bifunctional 3,4-dihy 26.5 86 0.0019 31.7 4.2 37 43-82 339-375 (402)
84 PLN02831 Bifunctional GTP cycl 25.2 91 0.002 32.0 4.2 37 43-82 373-409 (450)
85 PRK09319 bifunctional 3,4-dihy 25.1 91 0.002 32.8 4.2 37 43-82 343-379 (555)
86 COG1453 Predicted oxidoreducta 24.2 57 0.0012 32.6 2.4 43 41-83 35-84 (391)
87 PRK11449 putative deoxyribonuc 23.8 3E+02 0.0064 25.7 7.1 36 254-291 89-124 (258)
88 PRK14332 (dimethylallyl)adenos 23.8 7.8E+02 0.017 25.0 14.0 194 36-265 182-397 (449)
89 CHL00041 rps11 ribosomal prote 23.7 1.8E+02 0.0039 24.0 5.0 36 40-78 63-103 (116)
90 PRK09607 rps11p 30S ribosomal 23.4 1.7E+02 0.0038 24.9 4.9 37 40-79 60-109 (132)
91 TIGR01579 MiaB-like-C MiaB-lik 23.3 7.4E+02 0.016 24.6 13.7 140 36-205 166-330 (414)
92 TIGR00640 acid_CoA_mut_C methy 23.0 2.2E+02 0.0048 23.8 5.6 44 37-83 40-95 (132)
93 cd04734 OYE_like_3_FMN Old yel 22.6 7.2E+02 0.016 24.2 13.4 127 164-296 62-207 (343)
94 PF14606 Lipase_GDSL_3: GDSL-l 22.2 4E+02 0.0088 23.8 7.2 53 236-291 76-132 (178)
95 PF12876 Cellulase-like: Sugar 22.2 2.4E+02 0.0053 21.5 5.3 46 110-156 7-63 (88)
96 TIGR03822 AblA_like_2 lysine-2 21.7 5E+02 0.011 25.1 8.5 11 53-63 136-146 (321)
97 COG2730 BglC Endoglucanase [Ca 21.6 5.9E+02 0.013 25.5 9.2 102 40-146 76-218 (407)
98 PF07799 DUF1643: Protein of u 21.4 87 0.0019 26.1 2.7 39 166-206 21-61 (136)
99 PF06953 ArsD: Arsenical resis 21.2 3.9E+02 0.0084 22.4 6.5 56 65-127 31-86 (123)
100 PRK05309 30S ribosomal protein 21.1 2.1E+02 0.0046 24.0 5.0 36 40-78 67-107 (128)
101 COG1058 CinA Predicted nucleot 21.1 2.7E+02 0.0057 26.4 6.1 34 113-149 3-36 (255)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.9e-86 Score=636.34 Aligned_cols=306 Identities=44% Similarity=0.781 Sum_probs=253.2
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEeeCCCchhhhhhcHHHHHHHHHHhh
Q 043597 25 VGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVPNEAINYVASSQDAADKWVQDHI 104 (340)
Q Consensus 25 ~Gv~Yg~~~~~~ps~~~v~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv~n~~~~~~a~~~~~a~~wv~~~v 104 (340)
||||||+.++|+|+|.+|++++|+ ++|++||||++|+++|+|++++||+|++||+|++++++++++..|..|++++|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks---~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv 77 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKS---NGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNV 77 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHH---TT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHT
T ss_pred CeEeccCccCCCCCHHHHHHHHHh---cccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhcc
Confidence 799999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCceEEEEEeecccccCCcHhHHHHHHHHHHHHHHHcCC-CceEEeeeeecccccccCCCCCcccCcchhhhhhh
Q 043597 105 ITYVRKGVRFRYLCVGNEVIPGILATCVEPAIMNLHNSVRKAGY-DFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSS 183 (340)
Q Consensus 105 ~~~~~~~~~I~~I~VGNEvl~~~~~~~ll~am~~v~~aL~~~gl-~~I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~ 183 (340)
.+|. +.++|++|+||||++.......|+|+|+++|++|++.|| ++|||+|+++++++..+||||+|.|++++.+.|++
T Consensus 78 ~~~~-~~~~i~~i~VGnEv~~~~~~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~ 156 (310)
T PF00332_consen 78 LPYL-PAVNIRYIAVGNEVLTGTDNAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDP 156 (310)
T ss_dssp CTCT-TTSEEEEEEEEES-TCCSGGGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHH
T ss_pred cccC-cccceeeeecccccccCccceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhH
Confidence 9998 889999999999999875444899999999999999999 58999999999999999999999999999999999
Q ss_pred hhHHhhhcCCceeeeccccccccCCCCCcccccccccCC-cccCCCCcccccHHHHHHHHHHHHHHHhcCCCCccEEEee
Q 043597 184 ITHCLYSLGSPLLINVYPYYALVEDPVHIPFEYALFTSR-TPIRDGHLEYYNLFDAMVDAFVAAMVRVVQREDVKLVVSE 262 (340)
Q Consensus 184 ~l~fL~~~~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~-~~~~~~~~~y~n~fda~~da~~~al~k~~g~~~~~vvItE 262 (340)
+++||.++++|||+|+||||.+..+|.+++|+||+|+++ ... |++++|+||||+|+|++++||+|+ |+++++|+|||
T Consensus 157 ~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~-g~~~~~vvv~E 234 (310)
T PF00332_consen 157 LLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKL-GFPNVPVVVGE 234 (310)
T ss_dssp HHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTT-T-TT--EEEEE
T ss_pred HHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHh-CCCCceeEEec
Confidence 999999999999999999999999999999999999998 333 668899999999999999999999 99999999999
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecCCCCCC-CCccceeeecCCCcccccCC
Q 043597 263 TGWPTDGRIGYAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNEDLKTP-EEEKNFGTFYPNFTEKYPLW 339 (340)
Q Consensus 263 TGWPs~G~~~~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~g-~~E~~wGlf~~d~~~ky~l~ 339 (340)
|||||+|+. +|+++||++|++++++++. .|||+||+..+++||||||||+||++ .+|||||||++||++||+|+
T Consensus 235 TGWPs~G~~-~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~ 309 (310)
T PF00332_consen 235 TGWPSAGDP-GATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLD 309 (310)
T ss_dssp E---SSSST-TCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS---
T ss_pred cccccCCCC-CCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCC
Confidence 999999997 8999999999999999994 89999999999999999999999995 59999999999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-48 Score=354.86 Aligned_cols=249 Identities=22% Similarity=0.272 Sum_probs=201.1
Q ss_pred ccCceeEEecCCCCC--CCCHHHHHHHHhccccCCcc-EEEEecCC----hHHHHHHhcCCCEEEEeeCCCchhhhhhcH
Q 043597 21 FSGDVGINYGREGDN--LPSPKQVIDFLTKNFSNKIG-LIRIYDAN----IEILEALSGTNLVVTIGVPNEAINYVASSQ 93 (340)
Q Consensus 21 ~~~~~Gv~Yg~~~~~--~ps~~~v~~llk~~~~~~~~-~VRiY~~d----~~vl~A~~~~gi~v~lGv~n~~~~~~a~~~ 93 (340)
+.+..||||+++.++ ||+.+|+..+|..+ ..++ .||+|++| .+|++|+...|+||+||||..+. +..+.
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l--~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd--~~~~~ 117 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELL--ASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDD--IHDAV 117 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHh--ccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccc--hhhhH
Confidence 346789999999887 79999997766553 3343 99999987 46899999999999999998552 22222
Q ss_pred HHHHHHHHHhhhhhccCCceEEEEEeecccccCC--cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCc
Q 043597 94 DAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGI--LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQG 171 (340)
Q Consensus 94 ~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~~--~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g 171 (340)
+ .-+..++.++. .++.|++|+||||+|+|+ ++++|+.+|.++|.+|+.+|++ .||+|+++|.++.++ |
T Consensus 118 ~---~til~ay~~~~-~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~-gpV~T~dsw~~~~~n-p---- 187 (305)
T COG5309 118 E---KTILSAYLPYN-GWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD-GPVTTVDSWNVVINN-P---- 187 (305)
T ss_pred H---HHHHHHHhccC-CCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC-CceeecccceeeeCC-h----
Confidence 2 12556677776 789999999999999996 8999999999999999999994 689999999999873 1
Q ss_pred ccCcchhhhhhhhhHHhhhcCCceeeeccccccccCCCCCcccccccccCCcccCCCCcccccHHHHHHHHHHHHHHHhc
Q 043597 172 QFAPDVADVMSSITHCLYSLGSPLLINVYPYYALVEDPVHIPFEYALFTSRTPIRDGHLEYYNLFDAMVDAFVAAMVRVV 251 (340)
Q Consensus 172 ~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~~~~~~~~~~y~n~fda~~da~~~al~k~~ 251 (340)
-|+++.||+|+|.||||+.+...+ +.+ .++-.|++-++.+
T Consensus 188 ---------------~l~~~SDfia~N~~aYwd~~~~a~----------------~~~----~f~~~q~e~vqsa----- 227 (305)
T COG5309 188 ---------------ELCQASDFIAANAHAYWDGQTVAN----------------AAG----TFLLEQLERVQSA----- 227 (305)
T ss_pred ---------------HHhhhhhhhhcccchhccccchhh----------------hhh----HHHHHHHHHHHHh-----
Confidence 246688999999999999986432 122 2444556655544
Q ss_pred CCCCccEEEeeecCCCCCCCC---CCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecCCCCC-C--CCccce
Q 043597 252 QREDVKLVVSETGWPTDGRIG---YAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNEDLKT-P--EEEKNF 325 (340)
Q Consensus 252 g~~~~~vvItETGWPs~G~~~---~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~-g--~~E~~w 325 (340)
...+|+++|+||||||.|..+ .||++||++|+++++|.++ +-| +++|+||+|||+||. + ++|+||
T Consensus 228 ~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~-------~~G--~d~fvfeAFdd~WK~~~~y~VEkyw 298 (305)
T COG5309 228 CGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR-------SCG--YDVFVFEAFDDDWKADGSYGVEKYW 298 (305)
T ss_pred cCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh-------ccC--ccEEEeeeccccccCccccchhhce
Confidence 234599999999999999877 7999999999999999985 224 899999999999998 4 799999
Q ss_pred eeecCCC
Q 043597 326 GTFYPNF 332 (340)
Q Consensus 326 Glf~~d~ 332 (340)
|+++.++
T Consensus 299 Gv~~s~~ 305 (305)
T COG5309 299 GVLSSDR 305 (305)
T ss_pred eeeccCC
Confidence 9999875
No 3
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.35 E-value=2.3e-11 Score=115.87 Aligned_cols=233 Identities=21% Similarity=0.274 Sum_probs=115.1
Q ss_pred eeEEecCCCC-------C-CCCHHH---HHHHHhccccCCccEEEEecCCh-----HHHHHHhcCCCEEEEeeCCCchhh
Q 043597 25 VGINYGREGD-------N-LPSPKQ---VIDFLTKNFSNKIGLIRIYDANI-----EILEALSGTNLVVTIGVPNEAINY 88 (340)
Q Consensus 25 ~Gv~Yg~~~~-------~-~ps~~~---v~~llk~~~~~~~~~VRiY~~d~-----~vl~A~~~~gi~v~lGv~n~~~~~ 88 (340)
.||.|.|-++ | |-.+++ .+.+||. .|++.||+|..|| ..+.+|++.||-|++.+... -.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~---LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~s 105 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKE---LGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGS 105 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHH---HT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHH---cCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-Ccc
Confidence 6999998876 2 222332 3568899 7999999999884 58999999999999999875 223
Q ss_pred hhhcHHHHHHH-------HHHhhhhhccCCceEEEEEeecccccCC----cHhHHHHHHHHHHHHHHHcCCCceEEeeee
Q 043597 89 VASSQDAADKW-------VQDHIITYVRKGVRFRYLCVGNEVIPGI----LATCVEPAIMNLHNSVRKAGYDFIFVTTAV 157 (340)
Q Consensus 89 ~a~~~~~a~~w-------v~~~v~~~~~~~~~I~~I~VGNEvl~~~----~~~~ll~am~~v~~aL~~~gl~~I~VsT~~ 157 (340)
+.+... +..| ....|..|. ..+|+-+..+|||++... .++.+-.++|++|+-+++.+++.|||+-+-
T Consensus 106 I~r~~P-~~sw~~~l~~~~~~vid~fa-~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVGYsa 183 (314)
T PF03198_consen 106 INRSDP-APSWNTDLLDRYFAVIDAFA-KYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVGYSA 183 (314)
T ss_dssp --TTS-------HHHHHHHHHHHHHHT-T-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE
T ss_pred ccCCCC-cCCCCHHHHHHHHHHHHHhc-cCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEc
Confidence 433221 1223 334455554 568999999999999862 688899999999999999999889999764
Q ss_pred ecccccccCCCCCcccCcchhhhhhhhhHHhh-----hcCCceeeeccccccccCCCCCcccccccccCCcccCCCCccc
Q 043597 158 AANVLGTSYPPSQGQFAPDVADVMSSITHCLY-----SLGSPLLINVYPYYALVEDPVHIPFEYALFTSRTPIRDGHLEY 232 (340)
Q Consensus 158 ~~~~~~~s~pPs~g~F~~~~~~~l~~~l~fL~-----~~~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~~~~~~~~~~y 232 (340)
+- +- .+ ..++.++|. +..|++++|.|-+=... .|+ ...|
T Consensus 184 aD-~~---------~~-------r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~S-----------tf~--------~SGy 227 (314)
T PF03198_consen 184 AD-DA---------EI-------RQDLANYLNCGDDDERIDFFGLNSYEWCGDS-----------TFE--------TSGY 227 (314)
T ss_dssp ----T---------TT-------HHHHHHHTTBTT-----S-EEEEE----SS-------------HH--------HHSH
T ss_pred cC-Ch---------hH-------HHHHHHHhcCCCcccccceeeeccceecCCC-----------ccc--------cccH
Confidence 31 10 11 223444443 35699999998543211 121 0113
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCccEEEeeecCCCCCCCCCCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEee
Q 043597 233 YNLFDAMVDAFVAAMVRVVQREDVKLVVSETGWPTDGRIGYAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMF 312 (340)
Q Consensus 233 ~n~fda~~da~~~al~k~~g~~~~~vvItETGWPs~G~~~~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~f 312 (340)
..+.+ .. +++ .+||+.+|.|.-+.... .=.+-++.|-. -+..+-| | -.+||.+
T Consensus 228 ~~l~~--------~f---~~y-~vPvffSEyGCn~~~pR--~f~ev~aly~~-~Mt~v~S--------G----GivYEy~ 280 (314)
T PF03198_consen 228 DRLTK--------EF---SNY-SVPVFFSEYGCNTVTPR--TFTEVPALYSP-EMTDVWS--------G----GIVYEYF 280 (314)
T ss_dssp HHHHH--------HH---TT--SS-EEEEEE---SSSS-----THHHHHTSH-HHHTTEE--------E----EEES-SB
T ss_pred HHHHH--------Hh---hCC-CCCeEEcccCCCCCCCc--cchHhHHhhCc-cchhhee--------c----eEEEEEe
Confidence 32221 22 155 59999999999866632 11122222222 2233222 2 4566666
Q ss_pred cCCCCCCCCccceeeecCCCc
Q 043597 313 NEDLKTPEEEKNFGTFYPNFT 333 (340)
Q Consensus 313 De~wK~g~~E~~wGlf~~d~~ 333 (340)
-| +.+|||...++.
T Consensus 281 ~e-------~n~yGlV~~~~~ 294 (314)
T PF03198_consen 281 QE-------ANNYGLVEISGD 294 (314)
T ss_dssp ---------SSS--SEEE-TT
T ss_pred cc-------CCceEEEEEcCC
Confidence 55 467888876543
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.13 E-value=1e-08 Score=99.70 Aligned_cols=240 Identities=14% Similarity=0.113 Sum_probs=122.4
Q ss_pred HHHHHHHHhccccCCccEEEE--ec-------CC-hHH---HHHHhcCCCEEEEeeCCCch---------h------hhh
Q 043597 39 PKQVIDFLTKNFSNKIGLIRI--YD-------AN-IEI---LEALSGTNLVVTIGVPNEAI---------N------YVA 90 (340)
Q Consensus 39 ~~~v~~llk~~~~~~~~~VRi--Y~-------~d-~~v---l~A~~~~gi~v~lGv~n~~~---------~------~~a 90 (340)
..++.++||. .|++.||+ |. +| ..+ .+.+++.||+|+|..--+|- + +++
T Consensus 26 ~~d~~~ilk~---~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~ 102 (332)
T PF07745_consen 26 EKDLFQILKD---HGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFD 102 (332)
T ss_dssp B--HHHHHHH---TT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHH
T ss_pred CCCHHHHHHh---cCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHH
Confidence 3678999999 99986655 42 22 233 45556799999999876431 0 111
Q ss_pred hcHHHHHHHHHHhhhhhccCCceEEEEEeecccccC--------CcHhHHHHHHHHHHHHHHHcCCCceEE--eeeeecc
Q 043597 91 SSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPG--------ILATCVEPAIMNLHNSVRKAGYDFIFV--TTAVAAN 160 (340)
Q Consensus 91 ~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~--------~~~~~ll~am~~v~~aL~~~gl~~I~V--sT~~~~~ 160 (340)
+=..+...+.++.+.........++.|-||||.-.+ ...+.+...++.-.+++|+.+- ++|| ..+...+
T Consensus 103 ~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p-~~kV~lH~~~~~~ 181 (332)
T PF07745_consen 103 QLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP-NIKVMLHLANGGD 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS-TSEEEEEES-TTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC-CCcEEEEECCCCc
Confidence 111223334444343332235788899999998553 1567777777777788877554 3443 3322111
Q ss_pred cccccCCCCCcccCcchhhhhhhhhHHhhh---cCCceeeeccccccccCCCCCcccccccccCCcccCCCCcccccHHH
Q 043597 161 VLGTSYPPSQGQFAPDVADVMSSITHCLYS---LGSPLLINVYPYYALVEDPVHIPFEYALFTSRTPIRDGHLEYYNLFD 237 (340)
Q Consensus 161 ~~~~s~pPs~g~F~~~~~~~l~~~l~fL~~---~~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~~~~~~~~~~y~n~fd 237 (340)
. ...+-..+.|.+ .-|+++++.||||...- +-+.
T Consensus 182 ~-----------------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l--------------------------~~l~ 218 (332)
T PF07745_consen 182 N-----------------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTL--------------------------EDLK 218 (332)
T ss_dssp H-----------------HHHHHHHHHHHHTTGG-SEEEEEE-STTST-H--------------------------HHHH
T ss_pred h-----------------HHHHHHHHHHHhcCCCcceEEEecCCCCcchH--------------------------HHHH
Confidence 0 111222233332 23999999999998721 0122
Q ss_pred HHHHHHHHHHHHhcCCCCccEEEeeecCCCCCCC-----C-----------CCCHHHHHHHHHHHHHhHHhcCCCCCCCC
Q 043597 238 AMVDAFVAAMVRVVQREDVKLVVSETGWPTDGRI-----G-----------YAITDYARTYNNKLREHAIVSGRTPRKAD 301 (340)
Q Consensus 238 a~~da~~~al~k~~g~~~~~vvItETGWPs~G~~-----~-----------~as~~na~~y~~~~i~~~~~~~Gtp~rpg 301 (340)
..++ .|.+. + +|+|+|.|||||..-.. + -+|++.|++|++++++.+.+-.+ +
T Consensus 219 ~~l~----~l~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~ 286 (332)
T PF07745_consen 219 NNLN----DLASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----G 286 (332)
T ss_dssp HHHH----HHHHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------T
T ss_pred HHHH----HHHHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----C
Confidence 2222 23322 3 68999999999999211 1 25899999999999999875211 1
Q ss_pred CceeEEEEE-eecCCCC-----CC-CCccceeeecCCCcccccC
Q 043597 302 INLEVYIFA-MFNEDLK-----TP-EEEKNFGTFYPNFTEKYPL 338 (340)
Q Consensus 302 ~~~~~y~F~-~fDe~wK-----~g-~~E~~wGlf~~d~~~ky~l 338 (340)
+.+=+|+-| ..-..+. .| ..|.. +||+.+|++--.|
T Consensus 287 ~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 287 GGLGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp TEEEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred CeEEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 124455444 2222221 12 23333 8999888764433
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=5.6e-06 Score=78.43 Aligned_cols=243 Identities=16% Similarity=0.232 Sum_probs=130.5
Q ss_pred HHHHHHHHhccccCCccEEEE--e----cCC-----------h---HHHHHHhcCCCEEEEeeCCCchhhhhhcHH---H
Q 043597 39 PKQVIDFLTKNFSNKIGLIRI--Y----DAN-----------I---EILEALSGTNLVVTIGVPNEAINYVASSQD---A 95 (340)
Q Consensus 39 ~~~v~~llk~~~~~~~~~VRi--Y----~~d-----------~---~vl~A~~~~gi~v~lGv~n~~~~~~a~~~~---~ 95 (340)
..+..+.||. .|++.||+ | +.| . .+-+.+++.||||++..-.+|. . +++. .
T Consensus 65 ~qD~~~iLK~---~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDf--w-aDPakQ~k 138 (403)
T COG3867 65 RQDALQILKN---HGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDF--W-ADPAKQKK 138 (403)
T ss_pred HHHHHHHHHH---cCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhh--c-cChhhcCC
Confidence 3556789999 89986655 4 333 1 2334456789999998776541 1 0110 0
Q ss_pred HHHH-------HHHhhh--------hhccCCceEEEEEeecccccC------C--cHhHHHHHHHHHHHHHHHcCCCceE
Q 043597 96 ADKW-------VQDHII--------TYVRKGVRFRYLCVGNEVIPG------I--LATCVEPAIMNLHNSVRKAGYDFIF 152 (340)
Q Consensus 96 a~~w-------v~~~v~--------~~~~~~~~I~~I~VGNEvl~~------~--~~~~ll~am~~v~~aL~~~gl~~I~ 152 (340)
-.+| +++.|- ...+-...+..+-||||.-.. + ....+...++.--+++|... ..||
T Consensus 139 PkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~-p~ik 217 (403)
T COG3867 139 PKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS-PTIK 217 (403)
T ss_pred cHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC-CCce
Confidence 0112 222222 222234678889999999643 1 23344444444444544322 2455
Q ss_pred EeeeeecccccccCCCCCcccCcchhhhhhhhhHHhhhcCCceeeeccccccccCCCCCcccccccccCCcccCCCCccc
Q 043597 153 VTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINVYPYYALVEDPVHIPFEYALFTSRTPIRDGHLEY 232 (340)
Q Consensus 153 VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~~~~~~~~~~y 232 (340)
|--- +.+ |-..+.|+-=....-+.-++| |.|+.--||||.+.-+
T Consensus 218 v~lH-----la~--g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~------------------------ 261 (403)
T COG3867 218 VALH-----LAE--GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN------------------------ 261 (403)
T ss_pred EEEE-----ecC--CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH------------------------
Confidence 5432 222 223344431111111222222 8899999999998532
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCccEEEeeecC--------------CCCCCCC--CCCHHHHHHHHHHHHHhHHhcCCC
Q 043597 233 YNLFDAMVDAFVAAMVRVVQREDVKLVVSETGW--------------PTDGRIG--YAITDYARTYNNKLREHAIVSGRT 296 (340)
Q Consensus 233 ~n~fda~~da~~~al~k~~g~~~~~vvItETGW--------------Ps~G~~~--~as~~na~~y~~~~i~~~~~~~Gt 296 (340)
|| ...++ .+.. -+ +|.|+|.||+. |+.+... -.++.-|++|.+++|+.+.+ .
T Consensus 262 -nL-~~nl~----dia~--rY-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---v 329 (403)
T COG3867 262 -NL-TTNLN----DIAS--RY-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---V 329 (403)
T ss_pred -HH-HhHHH----HHHH--Hh-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---C
Confidence 11 11111 2222 13 68999999998 6666432 47889999999999999864 2
Q ss_pred CCCCCCceeEEEEE------------------ee-cCCCCCCCCccceeeecCCCcccccC
Q 043597 297 PRKADINLEVYIFA------------------MF-NEDLKTPEEEKNFGTFYPNFTEKYPL 338 (340)
Q Consensus 297 p~rpg~~~~~y~F~------------------~f-De~wK~g~~E~~wGlf~~d~~~ky~l 338 (340)
|...| .-+|+.| .| .|+|+.|..--+=-||+.+|.|--+|
T Consensus 330 p~~~G--lGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNqaLfdf~G~~LPSl 388 (403)
T COG3867 330 PKSNG--LGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQALFDFNGHPLPSL 388 (403)
T ss_pred CCCCc--eEEEEecccceeccCCCccccchhhccCcccccCCCccchhhhhhccCCcCcch
Confidence 23223 3344433 22 24555543333444777777665443
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.28 E-value=0.00035 Score=73.37 Aligned_cols=253 Identities=12% Similarity=0.037 Sum_probs=138.9
Q ss_pred eeEEecCCC---CCCCCHHH---HHHHHhccccCCccEEEEec--CChHHHHHHhcCCCEEEEeeCCCc-----------
Q 043597 25 VGINYGREG---DNLPSPKQ---VIDFLTKNFSNKIGLIRIYD--ANIEILEALSGTNLVVTIGVPNEA----------- 85 (340)
Q Consensus 25 ~Gv~Yg~~~---~~~ps~~~---v~~llk~~~~~~~~~VRiY~--~d~~vl~A~~~~gi~v~lGv~n~~----------- 85 (340)
.|+|+-... ...++.+. .+++||. .|++.||+-. .++..+.+|-..||-|+.=++...
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~---~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~ 371 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKW---IGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEA 371 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHH---CCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccc
Confidence 477763221 11244444 3568898 8999999953 357899999999998885443210
Q ss_pred ----hhhhh------hcHHHHHHHHHHhhhhhccCCceEEEEEeecccccCCcHhHHHHHHHHHHHHHHHcCCCceEEee
Q 043597 86 ----INYVA------SSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGILATCVEPAIMNLHNSVRKAGYDFIFVTT 155 (340)
Q Consensus 86 ----~~~~a------~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~~~~~~ll~am~~v~~aL~~~gl~~I~VsT 155 (340)
..... +.......-++..|..+. ....|..=.+|||.-... +..-..++.+.+.+++..-. =+|+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~-NHPSIi~Ws~gNE~~~~~--~~~~~~~~~l~~~~k~~Dpt-R~vt~ 447 (604)
T PRK10150 372 GNKPKETYSEEAVNGETQQAHLQAIRELIARDK-NHPSVVMWSIANEPASRE--QGAREYFAPLAELTRKLDPT-RPVTC 447 (604)
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHhcc-CCceEEEEeeccCCCccc--hhHHHHHHHHHHHHHhhCCC-CceEE
Confidence 00110 011222333666777765 445688999999974331 22223444444545444321 24555
Q ss_pred eeecccccccCCCCCcccCcchhhhhhhhhHHhhhcCCceeeeccccccccCCCCCcccccccccCCcccCCCCcccccH
Q 043597 156 AVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINVYPYYALVEDPVHIPFEYALFTSRTPIRDGHLEYYNL 235 (340)
Q Consensus 156 ~~~~~~~~~s~pPs~g~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~~~~~~~~~~y~n~ 235 (340)
+..+. . +|.. +-+.+..|+++.|.|+=|-..... . .. ....
T Consensus 448 ~~~~~---~--~~~~---------------~~~~~~~Dv~~~N~Y~~wy~~~~~--~----~~-------------~~~~ 488 (604)
T PRK10150 448 VNVMF---A--TPDT---------------DTVSDLVDVLCLNRYYGWYVDSGD--L----ET-------------AEKV 488 (604)
T ss_pred Eeccc---C--Cccc---------------ccccCcccEEEEcccceecCCCCC--H----HH-------------HHHH
Confidence 43210 0 1100 011234588889987533211100 0 00 0011
Q ss_pred HHHHHHHHHHHHHHhcCCCCccEEEeeecCCCCC----CCC-CCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEE
Q 043597 236 FDAMVDAFVAAMVRVVQREDVKLVVSETGWPTDG----RIG-YAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFA 310 (340)
Q Consensus 236 fda~~da~~~al~k~~g~~~~~vvItETGWPs~G----~~~-~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~ 310 (340)
++..++ ...+ .+ +||++++|.|+.+.- ..+ .-|.+.|..|++...+.+.. +|. -+=.|+..
T Consensus 489 ~~~~~~----~~~~--~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~ 554 (604)
T PRK10150 489 LEKELL----AWQE--KL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWN 554 (604)
T ss_pred HHHHHH----HHHH--hc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEe
Confidence 222221 1112 23 799999999976632 222 45788999998887776642 233 34589999
Q ss_pred eecCCCCCC---CCccceeeecCCCccccc
Q 043597 311 MFNEDLKTP---EEEKNFGTFYPNFTEKYP 337 (340)
Q Consensus 311 ~fDe~wK~g---~~E~~wGlf~~d~~~ky~ 337 (340)
+||-....| .-..+.||++.||+||-.
T Consensus 555 ~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~ 584 (604)
T PRK10150 555 FADFATSQGILRVGGNKKGIFTRDRQPKSA 584 (604)
T ss_pred eeccCCCCCCcccCCCcceeEcCCCCChHH
Confidence 999554432 112478999999999853
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.16 E-value=0.00023 Score=66.26 Aligned_cols=120 Identities=16% Similarity=0.057 Sum_probs=78.5
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHhccccCCccEEEEecC-------------C-------hHHHHHHhcCCCEEEEeeCC
Q 043597 24 DVGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDA-------------N-------IEILEALSGTNLVVTIGVPN 83 (340)
Q Consensus 24 ~~Gv~Yg~~~~~~ps~~~v~~llk~~~~~~~~~VRiY~~-------------d-------~~vl~A~~~~gi~v~lGv~n 83 (340)
..|+|-. ..+.. ..++.++.+|+ .|++.|||.-. + ..+|+++++.||+|+|.+..
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~---~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKA---LGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHH---TTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHH---CCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4566655 22112 67888999999 89999999721 1 24788999999999999886
Q ss_pred Cc----hhhhhhcHHHHHHHHHH----hhhhhccCCceEEEEEeecccccCCc--------HhHHHHHHHHHHHHHHHcC
Q 043597 84 EA----INYVASSQDAADKWVQD----HIITYVRKGVRFRYLCVGNEVIPGIL--------ATCVEPAIMNLHNSVRKAG 147 (340)
Q Consensus 84 ~~----~~~~a~~~~~a~~wv~~----~v~~~~~~~~~I~~I~VGNEvl~~~~--------~~~ll~am~~v~~aL~~~g 147 (340)
.. -............|+++ ....|. ....|.++=+.||...... ...+.+.++.+.+++|+.+
T Consensus 85 ~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~-~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~ 163 (281)
T PF00150_consen 85 APGWANGGDGYGNNDTAQAWFKSFWRALAKRYK-DNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAAD 163 (281)
T ss_dssp STTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHT-TTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTT
T ss_pred CccccccccccccchhhHHHHHhhhhhhccccC-CCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcC
Confidence 30 01111122222333322 333442 3456789999999988632 2678899999999999998
Q ss_pred CC
Q 043597 148 YD 149 (340)
Q Consensus 148 l~ 149 (340)
-+
T Consensus 164 ~~ 165 (281)
T PF00150_consen 164 PN 165 (281)
T ss_dssp SS
T ss_pred Cc
Confidence 74
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.71 E-value=0.0045 Score=58.01 Aligned_cols=79 Identities=11% Similarity=0.077 Sum_probs=53.9
Q ss_pred HHHHHHhcCCCCccEEEeeecCCCCCCCCCCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecC-CCCCCCCc
Q 043597 244 VAAMVRVVQREDVKLVVSETGWPTDGRIGYAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNE-DLKTPEEE 322 (340)
Q Consensus 244 ~~al~k~~g~~~~~vvItETGWPs~G~~~~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe-~wK~g~~E 322 (340)
...|++. +.-++||.|||.+-|..+ +++.|+.+++++++.+.+. | + ..-.++..+.|. .|.++
T Consensus 172 ~~~l~~~-~~~g~pi~iTE~dv~~~~-----~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~--- 235 (254)
T smart00633 172 RAALDRF-ASLGLEIQITELDISGYP-----NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG--- 235 (254)
T ss_pred HHHHHHH-HHcCCceEEEEeecCCCC-----cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC---
Confidence 3445544 334899999999998753 4488999999999988653 2 2 123555555553 35432
Q ss_pred cceeeecCCCcccccC
Q 043597 323 KNFGTFYPNFTEKYPL 338 (340)
Q Consensus 323 ~~wGlf~~d~~~ky~l 338 (340)
.+-|||+.|++||-..
T Consensus 236 ~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 236 GAPLLFDANYQPKPAY 251 (254)
T ss_pred CCceeECCCCCCChhh
Confidence 5789999999988643
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.33 E-value=0.012 Score=54.90 Aligned_cols=163 Identities=13% Similarity=0.004 Sum_probs=95.4
Q ss_pred ceEEEEEeecccccC---C-cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcccCcchhhhhhhhhHH
Q 043597 112 VRFRYLCVGNEVIPG---I-LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHC 187 (340)
Q Consensus 112 ~~I~~I~VGNEvl~~---~-~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~~l~f 187 (340)
..++.|..=||.=.. + ++++.+...+++.+.|+.. ++++..+..-.. ...+|+ -.+-|.+.++-
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~---~~~l~sPa~~~~--~~~~~~-------g~~Wl~~F~~~ 131 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP---GVKLGSPAVAFT--NGGTPG-------GLDWLSQFLSA 131 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC---CcEEECCeeccc--CCCCCC-------ccHHHHHHHHh
Confidence 357788888998654 2 7888888888877777753 466666532100 000011 11234444443
Q ss_pred hh--hcCCceeeeccccccccCCCCCcccccccccCCcccCCCCcccccHHHHHHHHHHHHHHHhcCCCCccEEEeeecC
Q 043597 188 LY--SLGSPLLINVYPYYALVEDPVHIPFEYALFTSRTPIRDGHLEYYNLFDAMVDAFVAAMVRVVQREDVKLVVSETGW 265 (340)
Q Consensus 188 L~--~~~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~~~~~~~~~~y~n~fda~~da~~~al~k~~g~~~~~vvItETGW 265 (340)
+. ...|++.+|.| ..+. .-|...++. ..++. +|||+|||.|+
T Consensus 132 ~~~~~~~D~iavH~Y-----~~~~------------------------~~~~~~i~~---~~~~~----~kPIWITEf~~ 175 (239)
T PF11790_consen 132 CARGCRVDFIAVHWY-----GGDA------------------------DDFKDYIDD---LHNRY----GKPIWITEFGC 175 (239)
T ss_pred cccCCCccEEEEecC-----CcCH------------------------HHHHHHHHH---HHHHh----CCCEEEEeecc
Confidence 32 24477766666 1100 012233333 33333 39999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecCCCCCCCCccceeeecCCCcc
Q 043597 266 PTDGRIGYAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNEDLKTPEEEKNFGTFYPNFTE 334 (340)
Q Consensus 266 Ps~G~~~~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe~wK~g~~E~~wGlf~~d~~~ 334 (340)
...+. ..+.+.++.|++..+..+.+. +. --.++||...+ .+. .....-.|++.+|++
T Consensus 176 ~~~~~--~~~~~~~~~fl~~~~~~ld~~------~~-VeryawF~~~~-~~~--~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 176 WNGGS--QGSDEQQASFLRQALPWLDSQ------PY-VERYAWFGFMN-DGS--GVNPNSALLDADGSL 232 (239)
T ss_pred cCCCC--CCCHHHHHHHHHHHHHHHhcC------CC-eeEEEeccccc-ccC--CCccccccccCCCCc
Confidence 87332 589999999999999998532 23 45688888323 222 345566677777754
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.14 E-value=0.035 Score=52.96 Aligned_cols=96 Identities=13% Similarity=0.161 Sum_probs=57.3
Q ss_pred ceeEEecCCCCC---CCCHHHH---HHHHhccccCCccEEEEec--CChHHHHHHhcCCCEEEEeeCCCch---hhh---
Q 043597 24 DVGINYGREGDN---LPSPKQV---IDFLTKNFSNKIGLIRIYD--ANIEILEALSGTNLVVTIGVPNEAI---NYV--- 89 (340)
Q Consensus 24 ~~Gv~Yg~~~~~---~ps~~~v---~~llk~~~~~~~~~VRiY~--~d~~vl~A~~~~gi~v~lGv~n~~~---~~~--- 89 (340)
..|||+...... .++.++. ++++|. .|++.||+.. .++..+.+|-..||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~---~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~ 93 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKE---MGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNC 93 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHH---TT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHh---cCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCcc
Confidence 359998764332 2455554 457888 8999999964 3588999999999999987765110 000
Q ss_pred ---hhc---HHHHHHHHHHhhhhhccCCceEEEEEeeccc
Q 043597 90 ---ASS---QDAADKWVQDHIITYVRKGVRFRYLCVGNEV 123 (340)
Q Consensus 90 ---a~~---~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEv 123 (340)
..+ .+.+.+.+++.|..+. ....|..=.+|||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~~-NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 94 NYDADDPEFRENAEQELREMVRRDR-NHPSIIMWSLGNES 132 (298)
T ss_dssp SCTTTSGGHHHHHHHHHHHHHHHHT-T-TTEEEEEEEESS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCc-CcCchheeecCccC
Confidence 011 2333445677777765 34567888899999
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=96.28 E-value=1.1 Score=45.45 Aligned_cols=45 Identities=7% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHHHHHHhccccCCccEEEEe--------c----CC-------hHHHHHHhcCCCEEEEeeCCCchh
Q 043597 40 KQVIDFLTKNFSNKIGLIRIY--------D----AN-------IEILEALSGTNLVVTIGVPNEAIN 87 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY--------~----~d-------~~vl~A~~~~gi~v~lGv~n~~~~ 87 (340)
++.+++||+ .|++.+|+= + .| .+++.++.+.||+++|.+.--+++
T Consensus 57 ~eDi~l~~~---~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P 120 (427)
T TIGR03356 57 EEDVALMKE---LGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP 120 (427)
T ss_pred HHHHHHHHH---cCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc
Confidence 456789999 899999863 1 12 258899999999999999644433
No 12
>PRK09936 hypothetical protein; Provisional
Probab=92.05 E-value=1.3 Score=42.40 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=50.9
Q ss_pred ceeEEecCCCCCC-CCHHHHHHHHhccccCCccEEEEe-----cCC--------hHHHHHHhcCCCEEEEeeCCCc--hh
Q 043597 24 DVGINYGREGDNL-PSPKQVIDFLTKNFSNKIGLIRIY-----DAN--------IEILEALSGTNLVVTIGVPNEA--IN 87 (340)
Q Consensus 24 ~~Gv~Yg~~~~~~-ps~~~v~~llk~~~~~~~~~VRiY-----~~d--------~~vl~A~~~~gi~v~lGv~n~~--~~ 87 (340)
.-|+=|.|...|. -+++|-.++++.+-..|++.+=+= +.| .+.|+++...||+|.||++-|. -+
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~q 100 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFFM 100 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHHH
Confidence 4577799998884 577777665444223788765442 223 4688999999999999999864 12
Q ss_pred hhhhcHHHHHHHHHH
Q 043597 88 YVASSQDAADKWVQD 102 (340)
Q Consensus 88 ~~a~~~~~a~~wv~~ 102 (340)
.+..|.++-++|++.
T Consensus 101 ~~~~d~~~~~~yl~~ 115 (296)
T PRK09936 101 HQKQDGAALESYLNR 115 (296)
T ss_pred HHhcCchhHHHHHHH
Confidence 333343333445543
No 13
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=90.73 E-value=20 Score=36.84 Aligned_cols=248 Identities=12% Similarity=0.054 Sum_probs=113.9
Q ss_pred HHHHHHHhccccCCccEEEEecC---C--------------------hHHHHHHhcCCCEEEEeeCC--Cchhh-----h
Q 043597 40 KQVIDFLTKNFSNKIGLIRIYDA---N--------------------IEILEALSGTNLVVTIGVPN--EAINY-----V 89 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY~~---d--------------------~~vl~A~~~~gi~v~lGv~n--~~~~~-----~ 89 (340)
+|+..+.+. .||+.||+.+. | -.++..+.+.|++-+|-+-- ..+.+ +
T Consensus 43 ~~l~~~~~~---~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~ 119 (486)
T PF01229_consen 43 EQLRELQEE---LGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVF 119 (486)
T ss_dssp HHHHHHHCC---S--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EET
T ss_pred HHHHHHHhc---cCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccc
Confidence 344445555 79999998731 1 14788889999998665542 11100 0
Q ss_pred --------hhcHHHH----HHHHHHhhhhhccCCceEE--EEEeecccccC-----CcHhHHHHHHHHHHHHHHHcCCCc
Q 043597 90 --------ASSQDAA----DKWVQDHIITYVRKGVRFR--YLCVGNEVIPG-----ILATCVEPAIMNLHNSVRKAGYDF 150 (340)
Q Consensus 90 --------a~~~~~a----~~wv~~~v~~~~~~~~~I~--~I~VGNEvl~~-----~~~~~ll~am~~v~~aL~~~gl~~ 150 (340)
..+..+- .++++..+..|. ...|. ..=|=||.=.. +...+-....+.+.++||+.. ..
T Consensus 120 ~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG--~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~-p~ 196 (486)
T PF01229_consen 120 WYKGNISPPKDYEKWRDLVRAFARHYIDRYG--IEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD-PE 196 (486)
T ss_dssp TTTEE-S-BS-HHHHHHHHHHHHHHHHHHHH--HHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH--TT
T ss_pred cccCCcCCcccHHHHHHHHHHHHHHHHhhcC--CccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 0122222 233333344442 11111 45578886433 245566677777888888765 35
Q ss_pred eEEeeeeecccccccCCCCCcccCcchhhhhhhhhHHhhhc---CCceeeeccccccccCCCCCcccccccccCCcccCC
Q 043597 151 IFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSL---GSPLLINVYPYYALVEDPVHIPFEYALFTSRTPIRD 227 (340)
Q Consensus 151 I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~~l~fL~~~---~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~~~~~~ 227 (340)
++|+-+-.. + +. ...+...++|+.+. -|++..|.||+-......... ....
T Consensus 197 ~~vGGp~~~--~--~~-----------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~---~~~~-------- 250 (486)
T PF01229_consen 197 LKVGGPAFA--W--AY-----------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENM---YERI-------- 250 (486)
T ss_dssp SEEEEEEEE--T--T------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-E---EEEB--------
T ss_pred CcccCcccc--c--cH-----------HHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhH---Hhhh--------
Confidence 788877110 0 00 12356667777653 388899999864332211100 0000
Q ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCCccEEEeeecCCCCCCCC---CCCHHHHHHHHHHHHHhHHhcCCCCCCCCCce
Q 043597 228 GHLEYYNLFDAMVDAFVAAMVRVVQREDVKLVVSETGWPTDGRIG---YAITDYARTYNNKLREHAIVSGRTPRKADINL 304 (340)
Q Consensus 228 ~~~~y~n~fda~~da~~~al~k~~g~~~~~vvItETGWPs~G~~~---~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~ 304 (340)
. ....+++...+ +...+... +.+++++.+|| |.+.-.+. .-|.-+|+-..+++++... ..+
T Consensus 251 ~--~~~~~~~~~~~-~~~~~~~e-~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~----------~~l 314 (486)
T PF01229_consen 251 E--DSRRLFPELKE-TRPIINDE-ADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDG----------AFL 314 (486)
T ss_dssp ----HHHHHHHHHH-HHHHHHTS-SSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGG----------GT-
T ss_pred h--hHHHHHHHHHH-HHHHHhhc-cCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhh----------hhh
Confidence 0 01112222222 21233333 67899999999 87776543 4555666655555665541 113
Q ss_pred eEEEE---E-eecCCCCC-CCCccceeeecCCCccc
Q 043597 305 EVYIF---A-MFNEDLKT-PEEEKNFGTFYPNFTEK 335 (340)
Q Consensus 305 ~~y~F---~-~fDe~wK~-g~~E~~wGlf~~d~~~k 335 (340)
+.|-+ + .|.|+--+ ..+-.-|||++.+|-+|
T Consensus 315 ~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 315 DSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred hhhhccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 33222 1 23332221 23445599999998555
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=87.12 E-value=2.9 Score=41.24 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=52.9
Q ss_pred HHHHHHHhccccCCccEEEEecC-------C---------hHHHHHHhcCCCEEEEeeCCCchhh---------------
Q 043597 40 KQVIDFLTKNFSNKIGLIRIYDA-------N---------IEILEALSGTNLVVTIGVPNEAINY--------------- 88 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY~~-------d---------~~vl~A~~~~gi~v~lGv~n~~~~~--------------- 88 (340)
++.+++||. .|++.|||-.. . ..+|..+++.||+|+|+++....+.
T Consensus 13 ~~d~~~m~~---~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~ 89 (374)
T PF02449_consen 13 EEDLRLMKE---AGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDAD 89 (374)
T ss_dssp HHHHHHHHH---HT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TT
T ss_pred HHHHHHHHH---cCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCC
Confidence 556778888 89999997421 1 2588889999999999997432110
Q ss_pred -----------hhh-c---HHHHHHHHHHhhhhhccCCceEEEEEeeccccc
Q 043597 89 -----------VAS-S---QDAADKWVQDHIITYVRKGVRFRYLCVGNEVIP 125 (340)
Q Consensus 89 -----------~a~-~---~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~ 125 (340)
..- + ...+.+.++..+..|. ....|.++.|+||.-.
T Consensus 90 g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~-~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 90 GRRRGFGSRQHYCPNSPAYREYARRFIRALAERYG-DHPAVIGWQIDNEPGY 140 (374)
T ss_dssp TSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHT-TTTTEEEEEECCSTTC
T ss_pred CCcCccCCccccchhHHHHHHHHHHHHHHHHhhcc-ccceEEEEEeccccCc
Confidence 000 1 2344555666666665 5567999999999765
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=84.95 E-value=0.42 Score=48.68 Aligned_cols=277 Identities=15% Similarity=0.155 Sum_probs=131.1
Q ss_pred HHHHHHHhccccCCccEEEEe--------c-----CC-------hHHHHHHhcCCCEEEEeeCCCchhhhhh------cH
Q 043597 40 KQVIDFLTKNFSNKIGLIRIY--------D-----AN-------IEILEALSGTNLVVTIGVPNEAINYVAS------SQ 93 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY--------~-----~d-------~~vl~A~~~~gi~v~lGv~n~~~~~~a~------~~ 93 (340)
+|.+++||+ .|++..|+= + .| .+++..+...||+.+|.+.--+++..-. ++
T Consensus 61 ~eDi~l~~~---lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~ 137 (455)
T PF00232_consen 61 KEDIALMKE---LGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNR 137 (455)
T ss_dssp HHHHHHHHH---HT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGST
T ss_pred hHHHHHHHh---hccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCH
Confidence 567889999 899999875 1 12 2588999999999999998655543111 11
Q ss_pred HHH---HHHHHHhhhhhccCCceEEEEEeecccccC-------C-------c-------HhHHHHHHHHHHHHHHHcCCC
Q 043597 94 DAA---DKWVQDHIITYVRKGVRFRYLCVGNEVIPG-------I-------L-------ATCVEPAIMNLHNSVRKAGYD 149 (340)
Q Consensus 94 ~~a---~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~-------~-------~-------~~~ll~am~~v~~aL~~~gl~ 149 (340)
..+ .+..+.-+..| .+.|+.-+.=||...- + . ...++-|-..+.+++++.+-
T Consensus 138 ~~~~~F~~Ya~~~~~~~---gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~- 213 (455)
T PF00232_consen 138 ETVDWFARYAEFVFERF---GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP- 213 (455)
T ss_dssp HHHHHHHHHHHHHHHHH---TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHh---CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc-
Confidence 111 11222223333 3567788888897531 0 1 23345555555566666553
Q ss_pred ceEEeeeeeccccc--ccC---------------------CCCCcccCcchhhhhhh----------hhHHhhhcCCcee
Q 043597 150 FIFVTTAVAANVLG--TSY---------------------PPSQGQFAPDVADVMSS----------ITHCLYSLGSPLL 196 (340)
Q Consensus 150 ~I~VsT~~~~~~~~--~s~---------------------pPs~g~F~~~~~~~l~~----------~l~fL~~~~d~~~ 196 (340)
+.+|+.++...... +.. |--.|.|..++...+.. -+..|....|+++
T Consensus 214 ~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlG 293 (455)
T PF00232_consen 214 DGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLG 293 (455)
T ss_dssp TSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEE
T ss_pred ceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhh
Confidence 35666665543221 000 11112222111111111 1233456789999
Q ss_pred eeccccccccCCC-CCcccccc---ccc----CCcccCCCCcccccHHHHHHHHHHHHHHHhcCCCCccEEEeeecCCCC
Q 043597 197 INVYPYYALVEDP-VHIPFEYA---LFT----SRTPIRDGHLEYYNLFDAMVDAFVAAMVRVVQREDVKLVVSETGWPTD 268 (340)
Q Consensus 197 vN~yPyf~~~~~~-~~~~l~~a---lf~----~~~~~~~~~~~y~n~fda~~da~~~al~k~~g~~~~~vvItETGWPs~ 268 (340)
+|-|.=---...+ ......+. .+. +.....+.+..+. =..+.+.+. -+.+ -++++||+|||.|++..
T Consensus 294 iNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~--P~Gl~~~L~-~l~~--~Y~~~pI~ITENG~~~~ 368 (455)
T PF00232_consen 294 INYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIY--PEGLRDVLR-YLKD--RYGNPPIYITENGIGDP 368 (455)
T ss_dssp EEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBE--THHHHHHHH-HHHH--HHTSSEEEEEEE---EE
T ss_pred hccccceeeccCccccccccccCCccccccccccccccccCcccc--cchHhhhhh-hhcc--ccCCCcEEEeccccccc
Confidence 9998533222222 11111111 010 0000011111110 112222222 2322 26789999999999888
Q ss_pred CCCC------CCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecCC-CCCCCCccceeeecCC------Cccc
Q 043597 269 GRIG------YAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNED-LKTPEEEKNFGTFYPN------FTEK 335 (340)
Q Consensus 269 G~~~------~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe~-wK~g~~E~~wGlf~~d------~~~k 335 (340)
.... .--+.--+.++..+.+.+ ..|-+ -.-+|..++.|-- |. .+..+.|||++-| |+||
T Consensus 369 ~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai--~dGv~-----V~GY~~WSl~Dn~Ew~-~Gy~~rfGl~~VD~~~~~~R~pK 440 (455)
T PF00232_consen 369 DEVDDGKVDDDYRIDYLQDHLNQVLKAI--EDGVN-----VRGYFAWSLLDNFEWA-EGYKKRFGLVYVDFFDTLKRTPK 440 (455)
T ss_dssp TTCTTSHBSHHHHHHHHHHHHHHHHHHH--HTT-E-----EEEEEEETSB---BGG-GGGGSE--SEEEETTTTTEEEEB
T ss_pred ccccccCcCcHHHHHHHHHHHHHHHhhh--ccCCC-----eeeEeeeccccccccc-cCccCccCceEEcCCCCcCeeec
Confidence 7532 122333355555555555 33432 1236677777732 32 2578999999999 6766
Q ss_pred c
Q 043597 336 Y 336 (340)
Q Consensus 336 y 336 (340)
-
T Consensus 441 ~ 441 (455)
T PF00232_consen 441 K 441 (455)
T ss_dssp H
T ss_pred c
Confidence 3
No 16
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=81.87 E-value=22 Score=35.12 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=74.5
Q ss_pred CccEEEEec-CChHHHHHHhcCCCEEEEeeCCCchhhhhhcHHHHHHHHHHhhhhhccCCceEEEEEeecccccC---Cc
Q 043597 53 KIGLIRIYD-ANIEILEALSGTNLVVTIGVPNEAINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPG---IL 128 (340)
Q Consensus 53 ~~~~VRiY~-~d~~vl~A~~~~gi~v~lGv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~---~~ 128 (340)
.+++|-+|+ .|++++..+.+.|++|++..-.. .+ ..+++....+++++.+. +. ..-...+|-+==|-... ..
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~siv~-~~-~~~gfDGIdIDwE~p~~~~~~d 130 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQKVE-LA-KSQFMDGINIDIEQPITKGSPE 130 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHHHH-HH-HHhCCCeEEEcccCCCCCCcch
Confidence 467888885 47899999999999999864322 22 23454444455554332 22 11124455444343321 23
Q ss_pred HhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcccC-cchhhhhhhhhHHhhhcCCceeeecccccc
Q 043597 129 ATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQFA-PDVADVMSSITHCLYSLGSPLLINVYPYYA 204 (340)
Q Consensus 129 ~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F~-~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~ 204 (340)
...+...|+++|++|++.+.+ ..++.+..+ .|+....+ -| +.-|++..|++.+-.|=|..
T Consensus 131 ~~~~t~llkelr~~l~~~~~~-~~Lsvav~~-------~p~~~~~~~yd--------~~~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 131 YYALTELVKETTKAFKKENPG-YQISFDVAW-------SPSCIDKRCYD--------YTGIADASDFLVVMDYDEQS 191 (358)
T ss_pred HHHHHHHHHHHHHHHhhcCCC-cEEEEEEec-------CcccccccccC--------HHHHHhhCCEeeEEeecccC
Confidence 567889999999999987642 224433221 12111110 01 12345677888899987653
No 17
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=79.30 E-value=2.9 Score=42.89 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=35.7
Q ss_pred HHHHHHHhccccCCccEEEEe---------c---CC-------hHHHHHHhcCCCEEEEeeCCCchhh
Q 043597 40 KQVIDFLTKNFSNKIGLIRIY---------D---AN-------IEILEALSGTNLVVTIGVPNEAINY 88 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY---------~---~d-------~~vl~A~~~~gi~v~lGv~n~~~~~ 88 (340)
+|.+++||+ .|++..|+= + .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 57 ~eDi~L~~~---lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEE---FGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHH---hCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 567899999 899888753 1 13 3589999999999999998766554
No 18
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=78.66 E-value=7.6 Score=37.91 Aligned_cols=174 Identities=14% Similarity=0.158 Sum_probs=69.6
Q ss_pred HHHHHhcCCCEEEEeeCCCchhhhhhcHHHHHHHHHHhhhhhcc----CCceEEEEEeecccccCC-----cHhHHHHHH
Q 043597 66 ILEALSGTNLVVTIGVPNEAINYVASSQDAADKWVQDHIITYVR----KGVRFRYLCVGNEVIPGI-----LATCVEPAI 136 (340)
Q Consensus 66 vl~A~~~~gi~v~lGv~n~~~~~~a~~~~~a~~wv~~~v~~~~~----~~~~I~~I~VGNEvl~~~-----~~~~ll~am 136 (340)
+-+-+..+|.+|+.|+..-.-.....+....-.|=-++-+.+.+ ..-+|.+-=.|||.-... ++.++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 44455679999999997421111111112334676666544331 223577777899975431 678888888
Q ss_pred HHHHHHHHHcCCC----ceEEeeeeecccccccCCCCCcccCcchhhhhhhhhHHhhh-cCCceeeeccccccccCCCCC
Q 043597 137 MNLHNSVRKAGYD----FIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYS-LGSPLLINVYPYYALVEDPVH 211 (340)
Q Consensus 137 ~~v~~aL~~~gl~----~I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~~l~fL~~-~~d~~~vN~yPyf~~~~~~~~ 211 (340)
..+|+.|+.. ++ +-+|.-|.. .|.. ..+++.|+-..+ ..|.+.-|.|+ .....++.
T Consensus 194 ~~Lr~il~~i-y~~~~~~P~v~gP~~-------------~~d~---~w~~~FL~~~g~~~vD~vT~H~Y~-lg~g~d~~- 254 (319)
T PF03662_consen 194 IQLRKILNEI-YKNALPGPLVVGPGG-------------FFDA---DWLKEFLKASGPGVVDAVTWHHYN-LGSGRDPA- 254 (319)
T ss_dssp ---HHHHHHH-HHH-TT---EEEEEE-------------SS-G---GGHHHHHHHTTTT--SEEEEEEEE-E--TT-TT-
T ss_pred HHHHHHHHHH-HhcCCCCCeEECCCC-------------CCCH---HHHHHHHHhcCCCccCEEEEEecC-CCCCchHH-
Confidence 8888888763 21 123444432 1222 224554444444 36888888885 33322221
Q ss_pred cccccccccCCcccCCCCcccccHHHHHHHHHHHHHHHhcCCCCccEEEeeecCCCCCCC
Q 043597 212 IPFEYALFTSRTPIRDGHLEYYNLFDAMVDAFVAAMVRVVQREDVKLVVSETGWPTDGRI 271 (340)
Q Consensus 212 ~~l~~alf~~~~~~~~~~~~y~n~fda~~da~~~al~k~~g~~~~~vvItETGWPs~G~~ 271 (340)
+.-.+.+| .|-+-+..++..+...+++. .++++++++|||=...|+.
T Consensus 255 --l~~~~l~p---------~~Ld~~~~~~~~~~~~v~~~--~p~~~~WlGEtg~Ay~gG~ 301 (319)
T PF03662_consen 255 --LIEDFLNP---------SYLDTLADTFQKLQQVVQEY--GPGKPVWLGETGSAYNGGA 301 (319)
T ss_dssp ---HHHHTS-----------HHHHHHHHHHHHH-----H--HH---EEEEEEEEESTT--
T ss_pred --HHHHhcCh---------hhhhHHHHHHHHHhhhhccc--CCCCCeEEeCcccccCCCC
Confidence 10111111 11122223333333334443 3789999999996665554
No 19
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=77.31 E-value=25 Score=33.62 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=51.6
Q ss_pred hHHHHHHhcCCCEEEEeeCCCc--------hhhhhhcHHHHHHHHHHhhhhhccCCceEEEEEeecccccCCcHhHHHHH
Q 043597 64 IEILEALSGTNLVVTIGVPNEA--------INYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGILATCVEPA 135 (340)
Q Consensus 64 ~~vl~A~~~~gi~v~lGv~n~~--------~~~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~~~~~~ll~a 135 (340)
+.++.++++.|+||++.|.+.. ...+.+++....+.++ ++..+. ..-.+.+|-+-=|.+..+.....+..
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l-~~~~~DGidiDwE~~~~~d~~~~~~f 125 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALA-KKYGYDGVNIDFENVPPEDREAYTQF 125 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHH-HHhCCCcEEEecccCCHHHHHHHHHH
Confidence 6788888888999999887642 2334455443333333 232322 11124455555565544456678899
Q ss_pred HHHHHHHHHHcCC
Q 043597 136 IMNLHNSVRKAGY 148 (340)
Q Consensus 136 m~~v~~aL~~~gl 148 (340)
++.+|.+|++.|+
T Consensus 126 l~~lr~~l~~~~~ 138 (313)
T cd02874 126 LRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHhhhcCc
Confidence 9999999987775
No 20
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=72.97 E-value=7.6 Score=39.99 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=43.9
Q ss_pred ccEEEeeecCCCCCCCC-------CCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecC-CCCCCCCccceee
Q 043597 256 VKLVVSETGWPTDGRIG-------YAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNE-DLKTPEEEKNFGT 327 (340)
Q Consensus 256 ~~vvItETGWPs~G~~~-------~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe-~wK~g~~E~~wGl 327 (340)
+||+|||-|........ .-=++--+.+++.+.+.+. ..|-+-+ -||.-++.|- .|..|+.++.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~v~-----GY~~WSl~Dn~EW~~G~y~~RfGl 442 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVELL-----GYTTWGCIDLVSAGTGEMKKRYGF 442 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchHhhcccCCCccCeece
Confidence 58999999998654321 1113344455555555541 2454332 2777777773 3655558999999
Q ss_pred ecCCCc
Q 043597 328 FYPNFT 333 (340)
Q Consensus 328 f~~d~~ 333 (340)
++-|..
T Consensus 443 ~~VD~~ 448 (478)
T PRK09593 443 IYVDRD 448 (478)
T ss_pred EEECCC
Confidence 998754
No 21
>PLN02998 beta-glucosidase
Probab=70.90 E-value=5.4 Score=41.29 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=44.3
Q ss_pred CCCccEEEeeecCCCCCCCC---CCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecC-CCCCCCCccceeee
Q 043597 253 REDVKLVVSETGWPTDGRIG---YAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNE-DLKTPEEEKNFGTF 328 (340)
Q Consensus 253 ~~~~~vvItETGWPs~G~~~---~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe-~wK~g~~E~~wGlf 328 (340)
+++.||+|||-|+....+.. .-=++--+.+++.+.+.+ ..|-+-+ =||.-++.|- .|.. +.++.|||+
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi--~dGv~V~-----GY~~WSl~DnfEW~~-Gy~~RfGLv 461 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSL--RKGSDVK-----GYFQWSLMDVFELFG-GYERSFGLL 461 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHH--HcCCCEE-----EEeeccchhhhchhc-cccCccceE
Confidence 55558999999998753210 122334455555555555 3454322 2667777772 2443 488999999
Q ss_pred cCCCc
Q 043597 329 YPNFT 333 (340)
Q Consensus 329 ~~d~~ 333 (340)
+-|..
T Consensus 462 ~VD~~ 466 (497)
T PLN02998 462 YVDFK 466 (497)
T ss_pred EECCC
Confidence 88754
No 22
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=70.69 E-value=46 Score=37.73 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=61.2
Q ss_pred eeEEecCCCC---CCCCHHHH---HHHHhccccCCccEEEEec--CChHHHHHHhcCCCEEEEeeCCCch-----hhhhh
Q 043597 25 VGINYGREGD---NLPSPKQV---IDFLTKNFSNKIGLIRIYD--ANIEILEALSGTNLVVTIGVPNEAI-----NYVAS 91 (340)
Q Consensus 25 ~Gv~Yg~~~~---~~ps~~~v---~~llk~~~~~~~~~VRiY~--~d~~vl~A~~~~gi~v~lGv~n~~~-----~~~a~ 91 (340)
.|+|+-.... ...+++++ ++++|. .|++.||+-. .++..++.|-..||-|+--++.+.. ..+..
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~---~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~ 429 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQ---HNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSD 429 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHH---CCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCC
Confidence 4788754322 23456554 568888 8999999954 3578999999999988876543210 01111
Q ss_pred cH---HHHHHHHHHhhhhhccCCceEEEEEeeccccc
Q 043597 92 SQ---DAADKWVQDHIITYVRKGVRFRYLCVGNEVIP 125 (340)
Q Consensus 92 ~~---~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~ 125 (340)
++ .+..+-++..|.... ....|..=++|||.-.
T Consensus 430 dp~~~~~~~~~~~~mV~Rdr-NHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 430 DPRWLPAMSERVTRMVQRDR-NHPSIIIWSLGNESGH 465 (1027)
T ss_pred CHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCccCCCc
Confidence 22 222333556666654 3467889999999744
No 23
>PLN02814 beta-glucosidase
Probab=70.68 E-value=5.6 Score=41.25 Aligned_cols=73 Identities=15% Similarity=0.362 Sum_probs=44.2
Q ss_pred CCCccEEEeeecCCCCCCCC---CCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecC-CCCCCCCccceeee
Q 043597 253 REDVKLVVSETGWPTDGRIG---YAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNE-DLKTPEEEKNFGTF 328 (340)
Q Consensus 253 ~~~~~vvItETGWPs~G~~~---~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe-~wK~g~~E~~wGlf 328 (340)
+++.||+|||-|++...+.. .-=++--+.+++.+.+.+ ..|-|-+ =||.-++.|- .|.. +.++.|||+
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai--~dGv~V~-----GY~~WSllDnfEW~~-Gy~~RfGLv 456 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAI--KNGSDTR-----GYFVWSMIDLYELLG-GYTTSFGMY 456 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHH--HcCCCEE-----EEeeccchhhhchhc-cccCccceE
Confidence 55668999999997553211 112333444555555555 2454332 2677777772 3543 489999999
Q ss_pred cCCCc
Q 043597 329 YPNFT 333 (340)
Q Consensus 329 ~~d~~ 333 (340)
+-|.+
T Consensus 457 yVD~~ 461 (504)
T PLN02814 457 YVNFS 461 (504)
T ss_pred EECCC
Confidence 98754
No 24
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=69.04 E-value=42 Score=37.94 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=60.7
Q ss_pred eeEEecCCCC---CCCCHHHH---HHHHhccccCCccEEEEecC--ChHHHHHHhcCCCEEEEeeCCCc--------hhh
Q 043597 25 VGINYGREGD---NLPSPKQV---IDFLTKNFSNKIGLIRIYDA--NIEILEALSGTNLVVTIGVPNEA--------INY 88 (340)
Q Consensus 25 ~Gv~Yg~~~~---~~ps~~~v---~~llk~~~~~~~~~VRiY~~--d~~vl~A~~~~gi~v~lGv~n~~--------~~~ 88 (340)
.|+|+-.... ...+++.+ +++||+ .|++.||+-.. ++..+.+|-..||-|+--++.+. ...
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~---~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~ 413 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQ---HNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISR 413 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHH---CCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccc
Confidence 4788643321 12355544 568888 89999999753 46789999999998887543211 001
Q ss_pred hhhcH---HHHHHHHHHhhhhhccCCceEEEEEeecccccC
Q 043597 89 VASSQ---DAADKWVQDHIITYVRKGVRFRYLCVGNEVIPG 126 (340)
Q Consensus 89 ~a~~~---~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~ 126 (340)
+..++ .+..+-++..|..+. ....|..=++|||.-.+
T Consensus 414 ~~~~p~~~~~~~~~~~~mV~Rdr-NHPSIi~WslGNE~~~g 453 (1021)
T PRK10340 414 ITDDPQWEKVYVDRIVRHIHAQK-NHPSIIIWSLGNESGYG 453 (1021)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccCcccc
Confidence 11222 222333666777764 34678888999998543
No 25
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=67.63 E-value=18 Score=26.24 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=36.0
Q ss_pred CCHHHHHHHHhccccCCccEEEEecCC-----hHHHHHHhcCCCEEEEeeCC
Q 043597 37 PSPKQVIDFLTKNFSNKIGLIRIYDAN-----IEILEALSGTNLVVTIGVPN 83 (340)
Q Consensus 37 ps~~~v~~llk~~~~~~~~~VRiY~~d-----~~vl~A~~~~gi~v~lGv~n 83 (340)
-++++.++..+. +|++.|=+=|-+ +...+.++..|++++.|+..
T Consensus 15 ~~~~~~~~~a~~---~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKE---LGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHH---cCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 468899999998 899999888776 45667777899999999864
No 26
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=66.26 E-value=39 Score=29.71 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHhcC--CCEEEEeeCCCchh---hhhhcHHHHHHHHHHhhhhhccCCceEEEEEeecccccCC---cHhHHHHHHH
Q 043597 66 ILEALSGT--NLVVTIGVPNEAIN---YVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGI---LATCVEPAIM 137 (340)
Q Consensus 66 vl~A~~~~--gi~v~lGv~n~~~~---~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~~---~~~~ll~am~ 137 (340)
-++.+++. |+||++.+...... .++++.....+.++ ++..+. ..-.+.+|-+==|..... ....++..|+
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v-~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFL-KTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHH-HHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 45555554 99999988864322 23444443333322 222232 112344444433443322 2578999999
Q ss_pred HHHHHHHHcCC
Q 043597 138 NLHNSVRKAGY 148 (340)
Q Consensus 138 ~v~~aL~~~gl 148 (340)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 27
>PLN02849 beta-glucosidase
Probab=65.28 E-value=8.6 Score=39.88 Aligned_cols=73 Identities=15% Similarity=0.319 Sum_probs=43.8
Q ss_pred CCCccEEEeeecCCCCCCCC-----CCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecC-CCCCCCCcccee
Q 043597 253 REDVKLVVSETGWPTDGRIG-----YAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNE-DLKTPEEEKNFG 326 (340)
Q Consensus 253 ~~~~~vvItETGWPs~G~~~-----~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe-~wK~g~~E~~wG 326 (340)
+++.||+|||-|++...... .-=++.-+.+++.+.+.+ ..|-+-+ =||.-++.|- .|.. +.++.||
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai--~dGv~V~-----GY~~WSl~DnfEW~~-Gy~~RfG 454 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAV--RNGSDTR-----GYFVWSFMDLYELLK-GYEFSFG 454 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHH--HcCCCEE-----EEeeccchhhhchhc-cccCccc
Confidence 55558999999998654211 112333445555555555 2454322 2667777773 2433 4899999
Q ss_pred eecCCCc
Q 043597 327 TFYPNFT 333 (340)
Q Consensus 327 lf~~d~~ 333 (340)
|++-|..
T Consensus 455 Li~VD~~ 461 (503)
T PLN02849 455 LYSVNFS 461 (503)
T ss_pred eEEECCC
Confidence 9988754
No 28
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.48 E-value=24 Score=35.07 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=30.4
Q ss_pred CCCCccEEEeeecCCCCCCCC-----CCCHHHHHHHHHHHHHhHHhc
Q 043597 252 QREDVKLVVSETGWPTDGRIG-----YAITDYARTYNNKLREHAIVS 293 (340)
Q Consensus 252 g~~~~~vvItETGWPs~G~~~-----~as~~na~~y~~~~i~~~~~~ 293 (340)
|.+..+|+.| |||.|.-. ..|...++.-+.++++.+...
T Consensus 144 g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 144 GNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred CCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 7778889887 99999853 577777777788888888643
No 29
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=64.30 E-value=19 Score=37.05 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=35.3
Q ss_pred HHHHHHHhccccCCccEEEE-------ec------CC-------hHHHHHHhcCCCEEEEeeCCCchhh
Q 043597 40 KQVIDFLTKNFSNKIGLIRI-------YD------AN-------IEILEALSGTNLVVTIGVPNEAINY 88 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRi-------Y~------~d-------~~vl~A~~~~gi~v~lGv~n~~~~~ 88 (340)
++.+++||+ +|++.-|+ += .| .+++.+|.+.||+-+|.++--+++.
T Consensus 70 ~eDi~Lm~~---lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 70 KEDIALFAE---MGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred HHHHHHHHH---cCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 567889999 89888775 31 23 2588999999999999998766553
No 30
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=64.07 E-value=9.3 Score=39.36 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=43.1
Q ss_pred CccEEEeeecCCCCCCC--CC-----CCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecC-CCCCCCCcccee
Q 043597 255 DVKLVVSETGWPTDGRI--GY-----AITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNE-DLKTPEEEKNFG 326 (340)
Q Consensus 255 ~~~vvItETGWPs~G~~--~~-----as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe-~wK~g~~E~~wG 326 (340)
++||+|||-|....... ++ -=++--+.+++.+.+.+. ..|-+-+ -||.-++.|- .|..|+.++.||
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~v~-----GY~~WSl~DnfEw~~G~y~~RfG 441 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVDLM-----GYTPWGCIDCVSFTTGQYSKRYG 441 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchhhhcccCCCccCccc
Confidence 36899999999864421 11 112333444444544441 1343322 2677777773 365566899999
Q ss_pred eecCCCc
Q 043597 327 TFYPNFT 333 (340)
Q Consensus 327 lf~~d~~ 333 (340)
|++-|.+
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9987654
No 31
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=61.35 E-value=16 Score=37.55 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=42.6
Q ss_pred ccEEEeeecCCCCCCCC--C-----CCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecC-CCCCCCCccceee
Q 043597 256 VKLVVSETGWPTDGRIG--Y-----AITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNE-DLKTPEEEKNFGT 327 (340)
Q Consensus 256 ~~vvItETGWPs~G~~~--~-----as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe-~wK~g~~E~~wGl 327 (340)
+||+|||-|........ + -=+.--+.+++.+.+.+ ..|-+-+ -||.-++.|- .|..|+..+.|||
T Consensus 366 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai--~dGv~V~-----GY~~WSl~Dn~Ew~~G~y~~RfGL 438 (474)
T PRK09852 366 KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAI--ADGIPLM-----GYTTWGCIDLVSASTGEMSKRYGF 438 (474)
T ss_pred CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHH--HCCCCEE-----EEEeecccccccccCCCccceeee
Confidence 58999999998544211 1 11233344555555554 2454322 2677777773 2554558899999
Q ss_pred ecCCCc
Q 043597 328 FYPNFT 333 (340)
Q Consensus 328 f~~d~~ 333 (340)
++-|.+
T Consensus 439 v~VD~~ 444 (474)
T PRK09852 439 VYVDRD 444 (474)
T ss_pred EEECCC
Confidence 998754
No 32
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=52.55 E-value=33 Score=35.66 Aligned_cols=73 Identities=8% Similarity=0.153 Sum_probs=49.7
Q ss_pred CCCCccEEEeeecCCCCCCCC---------CCCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeEEEEEeecCC-CCCCCC
Q 043597 252 QREDVKLVVSETGWPTDGRIG---------YAITDYARTYNNKLREHAIVSGRTPRKADINLEVYIFAMFNED-LKTPEE 321 (340)
Q Consensus 252 g~~~~~vvItETGWPs~G~~~---------~as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~fDe~-wK~g~~ 321 (340)
.++|.+|.|+|-|-+...+.. ..=.+..+.|++.+.+++.. .|. . ..-+|..++-|-. |.. +.
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-n----v~GYf~WSLmDnfEw~~-Gy 476 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-N----VKGYFVWSLLDNFEWLD-GY 476 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-c----eeeEEEeEcccchhhhc-Cc
Confidence 478999999999999876542 23355667777777777642 221 1 2338899988843 543 56
Q ss_pred ccceeeecCC
Q 043597 322 EKNFGTFYPN 331 (340)
Q Consensus 322 E~~wGlf~~d 331 (340)
.-.||||+-|
T Consensus 477 ~~RFGlyyVD 486 (524)
T KOG0626|consen 477 KVRFGLYYVD 486 (524)
T ss_pred ccccccEEEe
Confidence 6889999853
No 33
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=51.44 E-value=75 Score=29.25 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCCCccEEEeeecCCCCCCCC-----CCCHHHHHHHHHHHHHhHHh
Q 043597 252 QREDVKLVVSETGWPTDGRIG-----YAITDYARTYNNKLREHAIV 292 (340)
Q Consensus 252 g~~~~~vvItETGWPs~G~~~-----~as~~na~~y~~~~i~~~~~ 292 (340)
++++.+|+. .|||.|... ..+....+..+.++++.+..
T Consensus 46 ~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 46 GFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred CCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 666655555 599999753 34555556666667776643
No 34
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=50.79 E-value=19 Score=31.61 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=27.0
Q ss_pred HHHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEeeC
Q 043597 42 VIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVP 82 (340)
Q Consensus 42 v~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv~ 82 (340)
-++.|+. .|+++||+.+.+|.=+.++.+.||+|.=-++
T Consensus 131 gaqIL~d---LGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRD---LGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHH---TT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHH---cCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 3678999 8999999999999999999999999875443
No 35
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=48.77 E-value=1.1e+02 Score=29.86 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=39.6
Q ss_pred CCCEEEEeeC--CC---chhhhhhcHHHHHHHHHHhhhhhccCCceEEEEEeecccccC-----CcHhHHHHHHHHHHHH
Q 043597 73 TNLVVTIGVP--NE---AINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPG-----ILATCVEPAIMNLHNS 142 (340)
Q Consensus 73 ~gi~v~lGv~--n~---~~~~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~-----~~~~~ll~am~~v~~a 142 (340)
.++||++.|- .. ....+++++....+.++..+ .+. ..-.+.+|-+==|.... .....++..|+.+|++
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv-~~l-~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~ 146 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAI-AFL-RKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREA 146 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHH-HHH-HHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHH
Confidence 5899998874 22 23445555544444444332 222 11123344433333221 2456788999999999
Q ss_pred HHHc
Q 043597 143 VRKA 146 (340)
Q Consensus 143 L~~~ 146 (340)
|++.
T Consensus 147 l~~~ 150 (362)
T cd02872 147 FEPE 150 (362)
T ss_pred HHhh
Confidence 9987
No 36
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=48.08 E-value=3e+02 Score=27.66 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCEEEEeeCCCch----------------hhhhhc-HHHHHHHHHHhhhhhccCCceEEEEEeecccccC-
Q 043597 65 EILEALSGTNLVVTIGVPNEAI----------------NYVASS-QDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPG- 126 (340)
Q Consensus 65 ~vl~A~~~~gi~v~lGv~n~~~----------------~~~a~~-~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~- 126 (340)
-.|+++++.|+..+++.-|+.- ..+..+ .++-...+.+-++.|..-...|++|.-=||.-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 4889999999999998877421 011111 1222233444444442225789999999999865
Q ss_pred --C-------cHhHHHHHHHHHHHHHHHcCCCceEEeeeee
Q 043597 127 --I-------LATCVEPAIMNLHNSVRKAGYDFIFVTTAVA 158 (340)
Q Consensus 127 --~-------~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~ 158 (340)
. +.++....|+.++++|++.||+ .+|..+++
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~-t~I~~~Ea 227 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLS-TKISACEA 227 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S--EEEEEEE
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCC-ceEEecch
Confidence 1 6778899999999999999994 23555544
No 37
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=46.20 E-value=30 Score=31.10 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEE
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVT 78 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~ 78 (340)
.|.|+. .|+++||+.+.++.=+.++.+.||+|.
T Consensus 131 AQIL~d---LGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILED---LGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 678999 899999999998878889999999987
No 38
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=45.24 E-value=31 Score=31.17 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=30.1
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEE
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVT 78 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~ 78 (340)
+|.|+. .|+++||+.+.++.=+.++.+.||+|.
T Consensus 134 AQIL~d---LGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKA---LGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999 899999999998877889999999997
No 39
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=43.96 E-value=93 Score=28.75 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCEEEEeeCCCch---hhhhhcHHHHHHHHHHhhhhhccCCceEEEEEeecccccCCcHhHHHHHHHHHHH
Q 043597 65 EILEALSGTNLVVTIGVPNEAI---NYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGILATCVEPAIMNLHN 141 (340)
Q Consensus 65 ~vl~A~~~~gi~v~lGv~n~~~---~~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~~~~~~ll~am~~v~~ 141 (340)
..+++++..|+||++.|..... ..+.+++....+++++.+ .+. ..-.+.+|-+==|-.... .......++++|+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv-~~~-~~~~~DGIdiDwE~~~~~-~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKII-NYV-VSYNLDGIDVDLEGPDVT-FGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHH-HHH-HHhCCCceeEEeeccCcc-HhHHHHHHHHHHH
Confidence 4566777789999988876432 224445444444444332 222 111234444443443221 4567788999999
Q ss_pred HHHHcCC
Q 043597 142 SVRKAGY 148 (340)
Q Consensus 142 aL~~~gl 148 (340)
+|++.|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9987764
No 40
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=43.79 E-value=3.9e+02 Score=27.73 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=43.3
Q ss_pred HHHHHHhhhhhccCCceEEEEEeecccccC-------C----cHhHHHHHHHH-HHHHHHHcCC-CceEEee
Q 043597 97 DKWVQDHIITYVRKGVRFRYLCVGNEVIPG-------I----LATCVEPAIMN-LHNSVRKAGY-DFIFVTT 155 (340)
Q Consensus 97 ~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~-------~----~~~~ll~am~~-v~~aL~~~gl-~~I~VsT 155 (340)
...+.+-|+.|.+....|.+|++.||.... + ++++....|++ +.-+|++.|+ .++|+=.
T Consensus 207 A~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 207 ADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp HHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 345667788886446899999999999852 1 57778888887 9999999998 5687644
No 41
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=43.56 E-value=45 Score=34.24 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=35.0
Q ss_pred HHHHHHHhccccCCccEEEEe-------c-----CC-------hHHHHHHhcCCCEEEEeeCCCchhh
Q 043597 40 KQVIDFLTKNFSNKIGLIRIY-------D-----AN-------IEILEALSGTNLVVTIGVPNEAINY 88 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY-------~-----~d-------~~vl~A~~~~gi~v~lGv~n~~~~~ 88 (340)
++.++|||+ +|++..|+= - .| .+++.+|.+.||+-+|.+.--+++.
T Consensus 56 ~eDi~L~~~---lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEE---YGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHH---cCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 567889999 888877752 1 12 2588999999999999999766554
No 42
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=43.09 E-value=3.2e+02 Score=26.81 Aligned_cols=56 Identities=14% Similarity=-0.052 Sum_probs=32.8
Q ss_pred cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcccCcchhhhhhhhhHHhhhcCCceeeecccc
Q 043597 128 LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINVYPY 202 (340)
Q Consensus 128 ~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPy 202 (340)
....+...++..++.+++.. .+.+|+|-.... +... .| .. -+++..|++..|.||.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~~-p~~~vt~n~~~~-~~~~---------~d-------~~-~~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 207 QSDRVAEFFRWQADIIREYD-PDHPVTTNFMGS-WFNG---------ID-------YF-KWAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-TT-EEE-EE-TT----S---------S--------HH-HHGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCceEEeCcccc-ccCc---------CC-------HH-HHHhhCCcceeccccC
Confidence 35667788888999999886 346788753221 0000 11 11 1356779999999998
No 43
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=41.53 E-value=1.4e+02 Score=28.49 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcccCcchhhhhhhhhHHhhhcCCceeeeccccccccCCCCCc
Q 043597 133 EPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINVYPYYALVEDPVHI 212 (340)
Q Consensus 133 l~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~~~~~~~~ 212 (340)
-.+..++++..+..|..++++..... .+.|+ .+.+.|+..++.+.+-|+.++.=+......-
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~------~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~---- 173 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQ------GFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGAGL---- 173 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEeccccc------CCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCccc----
Confidence 34667778888887875566654321 11121 1347899999999999999966443333211
Q ss_pred ccccccccCCcccCCCCcccccHHHHHHHHHHHHHHHhcCCCCccEEEeeec--CCCCCCC
Q 043597 213 PFEYALFTSRTPIRDGHLEYYNLFDAMVDAFVAAMVRVVQREDVKLVVSETG--WPTDGRI 271 (340)
Q Consensus 213 ~l~~alf~~~~~~~~~~~~y~n~fda~~da~~~al~k~~g~~~~~vvItETG--WPs~G~~ 271 (340)
....+.+ ..+|- ... -+|+++||+++.| +|..-..
T Consensus 174 --~~~~~~p----------------~~~~~---va~---~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 174 --EKGHSDP----------------LYLDD---VAR---KFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred --ccCCCCc----------------hHHHH---HHH---HCCCCcEEEEecCCCCchhHHH
Confidence 0000000 02222 122 3799999999999 8877654
No 44
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=41.40 E-value=1.8e+02 Score=27.82 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHhc--CCCEEEEeeCC----CchhhhhhcHHHHHHHHHHhhhhhccCCceEEEEEeecccccC--CcHhHHHHHHHH
Q 043597 67 LEALSG--TNLVVTIGVPN----EAINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPG--ILATCVEPAIMN 138 (340)
Q Consensus 67 l~A~~~--~gi~v~lGv~n----~~~~~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~--~~~~~ll~am~~ 138 (340)
+.++++ .++||++.|.. +....+.++.....+.+++ |..+. ..-...+|-+==|.... .....++..|+.
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~~-i~~~~-~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDS-IVSFL-KKYGFDGIDIDWEYPGARGDDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHHH-HHHHH-HHcCCCeEEECCcCCCCCccHHHHHHHHHHH
Confidence 445554 48999998865 2234455554433333332 22222 11235555554344332 234578889999
Q ss_pred HHHHHHHc
Q 043597 139 LHNSVRKA 146 (340)
Q Consensus 139 v~~aL~~~ 146 (340)
+|+.|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999864
No 45
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.30 E-value=85 Score=28.79 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=40.5
Q ss_pred cEEEEecCC-----hHHHHHHhcCCCEEEEeeCCCchhhhhhcHHHHHHHHHHhhhhhccCCceEEEEEeecccc
Q 043597 55 GLIRIYDAN-----IEILEALSGTNLVVTIGVPNEAINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVI 124 (340)
Q Consensus 55 ~~VRiY~~d-----~~vl~A~~~~gi~v~lGv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl 124 (340)
-++++||+- ..+.++....-+.+++..-.....++ .....|++ +|+.|. ...+.-+.|||-.=
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W~~-~I~e~a--~~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNWIK-NIDEHA--SDDVVKILVGNKCD 128 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHHHH-HHHhhC--CCCCcEEEeecccc
Confidence 478899876 45777766544555555554444455 23345775 677875 34788999999763
No 46
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.94 E-value=2e+02 Score=28.81 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=71.4
Q ss_pred cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCccc--CcchhhhhhhhhHHhhhcCCceeeeccccccc
Q 043597 128 LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQF--APDVADVMSSITHCLYSLGSPLLINVYPYYAL 205 (340)
Q Consensus 128 ~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F--~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~ 205 (340)
+..++...+++.|+. +||++.-..-.-+...+ +.| .++.-+.++.+++.|.+.+=-++++++|+...
T Consensus 41 ~~~~v~~~i~~~~~~-------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN-------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHT-------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET
T ss_pred CHHHHHHHHHHHHHc-------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccCC
Confidence 355555555555542 47777765433343322 233 33333568889999999999999999998776
Q ss_pred cCCCCCcccccccccCCcccCCCCcccccHHHHHHHHHHHHHHHhcCC----CCccEEEeeecCCCCCCCCCCCHHHHHH
Q 043597 206 VEDPVHIPFEYALFTSRTPIRDGHLEYYNLFDAMVDAFVAAMVRVVQR----EDVKLVVSETGWPTDGRIGYAITDYART 281 (340)
Q Consensus 206 ~~~~~~~~l~~alf~~~~~~~~~~~~y~n~fda~~da~~~al~k~~g~----~~~~vvItETGWPs~G~~~~as~~na~~ 281 (340)
... +|. .++. +.+ . |+ ++-...+++. ||-.+.-..-+-.+++.
T Consensus 110 ~~~------~~~-----------------~~~~-------~~~-~-~~~v~~~~g~~~~~~~-w~g~~~~~Dftnp~a~~ 156 (441)
T PF01055_consen 110 DSP------DYE-----------------NYDE-------AKE-K-GYLVKNPDGSPYIGRV-WPGKGGFIDFTNPEARD 156 (441)
T ss_dssp TTT------B-H-----------------HHHH-------HHH-T-T-BEBCTTSSB-EEEE-TTEEEEEB-TTSHHHHH
T ss_pred CCC------cch-----------------hhhh-------Hhh-c-CceeecccCCcccccc-cCCcccccCCCChhHHH
Confidence 542 111 2221 111 1 22 2235677777 88443221345455888
Q ss_pred HHHHHHHhHHhcCCCCCCCCCceeEEEEEe
Q 043597 282 YNNKLREHAIVSGRTPRKADINLEVYIFAM 311 (340)
Q Consensus 282 y~~~~i~~~~~~~Gtp~rpg~~~~~y~F~~ 311 (340)
++++.++.+.... | ++.++..+
T Consensus 157 w~~~~~~~~~~~~------G--vdg~w~D~ 178 (441)
T PF01055_consen 157 WWKEQLKELLDDY------G--VDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHHTTS------T---SEEEEES
T ss_pred HHHHHHHHHHhcc------C--CceEEeec
Confidence 8877777765321 3 88888876
No 47
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=36.67 E-value=77 Score=28.62 Aligned_cols=54 Identities=22% Similarity=0.406 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcccCcchhhhh-hhhhHHhhhcCCceeeec
Q 043597 132 VEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVM-SSITHCLYSLGSPLLINV 199 (340)
Q Consensus 132 ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l-~~~l~fL~~~~d~~~vN~ 199 (340)
.-.+++.+.+.+...|+..|++.+.... +.| +- +.+ .++++.+.+.+=|+.+|+
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~------~~~-------~~-~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGG------FDP-------DD-PRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETT------CCT-------TS-GHCHHHHHHHHHHHT-EEEEEE
T ss_pred chhHHHHHHHhccccceeeeEecCCCCc------ccc-------cc-HHHHHHHHHHHHhhccceeeec
Confidence 3467888888888889866887764321 111 11 223 488898888887777774
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=35.74 E-value=81 Score=26.60 Aligned_cols=43 Identities=23% Similarity=0.293 Sum_probs=31.9
Q ss_pred CHHHHHHHHhccccCCccEEEEecC---------------------C--hHHHHHHhcCCCEEEEeeCC
Q 043597 38 SPKQVIDFLTKNFSNKIGLIRIYDA---------------------N--IEILEALSGTNLVVTIGVPN 83 (340)
Q Consensus 38 s~~~v~~llk~~~~~~~~~VRiY~~---------------------d--~~vl~A~~~~gi~v~lGv~n 83 (340)
++++.++.||. .+++.|-+|.- | .++++|+++.||+|++-+..
T Consensus 1 D~~~~~~~lk~---~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 1 DPEQFVDTLKE---AHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CHHHHHHHHHH---hCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 36777888887 67777777642 1 35789999999999887764
No 49
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=35.40 E-value=53 Score=29.44 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=30.9
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEee
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGV 81 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv 81 (340)
+|.|+. .|++++|+.+..+.=+.++.+.|++|.=-+
T Consensus 133 AQIL~d---LGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRD---LGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHH---cCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 678999 899999999998877889999999997333
No 50
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.39 E-value=4.8e+02 Score=26.25 Aligned_cols=73 Identities=7% Similarity=0.023 Sum_probs=40.9
Q ss_pred EEEEEeecccccC--------C-cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcccCcchhhhhhhh
Q 043597 114 FRYLCVGNEVIPG--------I-LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSI 184 (340)
Q Consensus 114 I~~I~VGNEvl~~--------~-~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~~ 184 (340)
...+.+|=|-... . +..+...+++.+|+.. ..+.++|..-. .+| .|-...+...
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----~~i~i~~d~Iv-----GfP-------gET~edf~~t 312 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV-----PDASISSDIIV-----GFP-------TETEEDFMET 312 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----CCCEEEEEEEE-----ECC-------CCCHHHHHHH
Confidence 4567777555432 1 5667777777777653 23566664321 343 2223457777
Q ss_pred hHHhhhcCCceeeecccccc
Q 043597 185 THCLYSLGSPLLINVYPYYA 204 (340)
Q Consensus 185 l~fL~~~~d~~~vN~yPyf~ 204 (340)
++|+.+.. +-.+++++|-.
T Consensus 313 l~fi~~~~-~~~~~~~~~sp 331 (434)
T PRK14330 313 VDLVEKAQ-FERLNLAIYSP 331 (434)
T ss_pred HHHHHhcC-CCEEeeeeccC
Confidence 88887644 33455555543
No 51
>PHA02754 hypothetical protein; Provisional
Probab=35.21 E-value=39 Score=24.66 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHcCC--CceEEeee
Q 043597 131 CVEPAIMNLHNSVRKAGY--DFIFVTTA 156 (340)
Q Consensus 131 ~ll~am~~v~~aL~~~gl--~~I~VsT~ 156 (340)
..-.+|+++|..|..+|. ++|++-|.
T Consensus 15 ~Fke~MRelkD~LSe~GiYi~RIkai~~ 42 (67)
T PHA02754 15 DFKEAMRELKDILSEAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHHHhhCceEEEEEEEEEe
Confidence 345799999999999997 67875543
No 52
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=34.61 E-value=1.6e+02 Score=29.87 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=57.4
Q ss_pred ChHHHHHHhcCCCEEEEeeCCCc--hhhhh--------hcHHHHHHHHHHhhhhhccCCceEEEEEeecccccCCcHhHH
Q 043597 63 NIEILEALSGTNLVVTIGVPNEA--INYVA--------SSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGILATCV 132 (340)
Q Consensus 63 d~~vl~A~~~~gi~v~lGv~n~~--~~~~a--------~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~~~~~~l 132 (340)
+..+++..+..+++.++++.|.. ...+. .++.+-.+-+. ++..-. ...-++++.+.=|.+....-+..
T Consensus 149 ~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~-~ii~~l-~~~Gyrgv~iDfE~v~~~DR~~y 226 (423)
T COG3858 149 NENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLIN-NIITLL-DARGYRGVNIDFENVGPGDRELY 226 (423)
T ss_pred CcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHH-HHHHHH-HhcCcccEEechhhCCHHHHHHH
Confidence 35688888889999999999866 22221 12221112122 221111 22347788888888876666677
Q ss_pred HHHHHHHHHHHHHcCCCceEEeeee
Q 043597 133 EPAIMNLHNSVRKAGYDFIFVTTAV 157 (340)
Q Consensus 133 l~am~~v~~aL~~~gl~~I~VsT~~ 157 (340)
---||+++.+|.+.|+ .++++.
T Consensus 227 t~flR~~r~~l~~~G~---~~siAv 248 (423)
T COG3858 227 TDFLRQVRDALHSGGY---TVSIAV 248 (423)
T ss_pred HHHHHHHHHHhccCCe---EEEEEe
Confidence 7889999999999886 455543
No 53
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=34.31 E-value=70 Score=30.84 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=55.9
Q ss_pred CceEEEEEeeccccc----CC------cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCc----ccCcc
Q 043597 111 GVRFRYLCVGNEVIP----GI------LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQG----QFAPD 176 (340)
Q Consensus 111 ~~~I~~I~VGNEvl~----~~------~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g----~F~~~ 176 (340)
...|....+|+|..- |+ ....|...+.+||+.|- ..+|||-+-.|+-+.. +.|.-| .|+
T Consensus 17 aggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~ilG----~~~kitYAADWsEY~~-~~p~dg~gd~~f~-- 89 (299)
T PF13547_consen 17 AGGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAILG----PGTKITYAADWSEYFG-YQPADGSGDVYFH-- 89 (299)
T ss_pred cCCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHhC----CCceEEEeccCHHhcC-cCCCCCCCccccc--
Confidence 356899999999753 11 34678888888888872 2478999988888764 445544 343
Q ss_pred hhhhhhhhhHHhhhcCCceeeecccccccc
Q 043597 177 VADVMSSITHCLYSLGSPLLINVYPYYALV 206 (340)
Q Consensus 177 ~~~~l~~~l~fL~~~~d~~~vN~yPyf~~~ 206 (340)
|-|+.. ....|+++|+-|.=.+--
T Consensus 90 ----LDpLWa--~~~IDfIGID~Y~PLSDw 113 (299)
T PF13547_consen 90 ----LDPLWA--DPNIDFIGIDNYFPLSDW 113 (299)
T ss_pred ----Cccccc--CCcCCEEEeecccccCCC
Confidence 444442 356799999988655433
No 54
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.21 E-value=4.3e+02 Score=25.38 Aligned_cols=71 Identities=11% Similarity=0.012 Sum_probs=40.7
Q ss_pred cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCC--CCcccC--cchhhhhhhhhHHhhhcCCceeeeccccc
Q 043597 128 LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPP--SQGQFA--PDVADVMSSITHCLYSLGSPLLINVYPYY 203 (340)
Q Consensus 128 ~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pP--s~g~F~--~~~~~~l~~~l~fL~~~~d~~~vN~yPyf 203 (340)
+.++++..++++++ .+ ||++.-.--.-|.....+ ..|.|+ ++.-|..+.+++-|.+.+=-++++++|+.
T Consensus 22 ~~~~v~~~~~~~~~----~~---iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v 94 (317)
T cd06598 22 NWQEVDDTIKTLRE----KD---FPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFV 94 (317)
T ss_pred CHHHHHHHHHHHHH----hC---CCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcc
Confidence 45566666666554 33 565554322122111100 123442 33345577888999988888999999998
Q ss_pred cc
Q 043597 204 AL 205 (340)
Q Consensus 204 ~~ 205 (340)
..
T Consensus 95 ~~ 96 (317)
T cd06598 95 LK 96 (317)
T ss_pred cC
Confidence 64
No 55
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=34.04 E-value=93 Score=25.33 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHHHHHHhccccCCccEEEEec--CC---hHHHHHHhcCCCEEEE
Q 043597 40 KQVIDFLTKNFSNKIGLIRIYD--AN---IEILEALSGTNLVVTI 79 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY~--~d---~~vl~A~~~~gi~v~l 79 (340)
+++.+.++. +|+..|+++- .. ..+|++++..|+++.-
T Consensus 50 ~~~~~~~~~---~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKE---FGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHH---cCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 345567777 8999999883 33 5699999999998653
No 56
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=33.97 E-value=4.2e+02 Score=25.23 Aligned_cols=83 Identities=10% Similarity=0.095 Sum_probs=44.2
Q ss_pred hHHHHHHhc--CCCEEE--E--eeCCC-chhhhhhcHHHHHHHHHHhhhhhccCCceEEEEEee-ccccc----CCcHhH
Q 043597 64 IEILEALSG--TNLVVT--I--GVPNE-AINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVG-NEVIP----GILATC 131 (340)
Q Consensus 64 ~~vl~A~~~--~gi~v~--l--Gv~n~-~~~~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VG-NEvl~----~~~~~~ 131 (340)
...+.+++. .++||+ + |=|.. ....+++++....+++++.+ .+. ..-.+.+|-+= =|... .+....
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~~-~~~-~~~~~DGidiD~we~p~~~~~~~d~~~ 131 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLLV-TTA-KKNHFDGIVLEVWSQLAAYGVPDKRKE 131 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHHH-HHH-HHcCCCcEEEechhhhcccCCHHHHHH
Confidence 334455554 579998 4 43543 24556666655455444332 332 11123344332 11111 114466
Q ss_pred HHHHHHHHHHHHHHcCC
Q 043597 132 VEPAIMNLHNSVRKAGY 148 (340)
Q Consensus 132 ll~am~~v~~aL~~~gl 148 (340)
++..|+.+|++|++.|+
T Consensus 132 ~~~~l~el~~~l~~~~~ 148 (318)
T cd02876 132 LIQLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 78999999999988775
No 57
>PRK09989 hypothetical protein; Provisional
Probab=32.91 E-value=3.9e+02 Score=24.45 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=37.3
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhccccCCccEEEEe---cCC-hHHHHHHhcCCCEEEE
Q 043597 25 VGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIY---DAN-IEILEALSGTNLVVTI 79 (340)
Q Consensus 25 ~Gv~Yg~~~~~~ps~~~v~~llk~~~~~~~~~VRiY---~~d-~~vl~A~~~~gi~v~l 79 (340)
..+|.+....++ |-++.++.++. .||+.|-+. +-+ .++.+.++++||++..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~---~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARK---AGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHH---cCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 456666665555 45678888888 899999984 333 4577788899999876
No 58
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=32.87 E-value=56 Score=33.21 Aligned_cols=27 Identities=19% Similarity=-0.004 Sum_probs=19.6
Q ss_pred cHhHHHHHHHHHHHHHHHcCCCceEEe
Q 043597 128 LATCVEPAIMNLHNSVRKAGYDFIFVT 154 (340)
Q Consensus 128 ~~~~ll~am~~v~~aL~~~gl~~I~Vs 154 (340)
...+.+.-++.+.+.|.++||.++.++
T Consensus 261 ~~~~~~~~~~~~~~~L~~~Gy~~~~~~ 287 (453)
T PRK13347 261 DAEERLRQARAVADRLLAAGYVPIGLD 287 (453)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 355667777789999999999544443
No 59
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.69 E-value=3.6e+02 Score=24.09 Aligned_cols=100 Identities=9% Similarity=0.111 Sum_probs=49.4
Q ss_pred HHHHHHHHhccccCCccEEEEecCC---------hHHHHHHhcCCCEEEE--eeCCCchhhhhhcHHHHHHHHHHhhhhh
Q 043597 39 PKQVIDFLTKNFSNKIGLIRIYDAN---------IEILEALSGTNLVVTI--GVPNEAINYVASSQDAADKWVQDHIITY 107 (340)
Q Consensus 39 ~~~v~~llk~~~~~~~~~VRiY~~d---------~~vl~A~~~~gi~v~l--Gv~n~~~~~~a~~~~~a~~wv~~~v~~~ 107 (340)
..++.+.+.. +|.++|=+.+.. ....++++..|+++.. ..+.....+.......+.+|++++
T Consensus 97 g~~~~~~l~~---~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 169 (265)
T cd01543 97 GRMAAEHFLE---RGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL---- 169 (265)
T ss_pred HHHHHHHHHH---CCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC----
Confidence 3445565555 677777655432 1234566677877621 111111111212223444454421
Q ss_pred ccCCceEEEEEeecccccCCcHhHHHHHHHHHHHHHHHcCC---CceEEeeeeecc
Q 043597 108 VRKGVRFRYLCVGNEVIPGILATCVEPAIMNLHNSVRKAGY---DFIFVTTAVAAN 160 (340)
Q Consensus 108 ~~~~~~I~~I~VGNEvl~~~~~~~ll~am~~v~~aL~~~gl---~~I~VsT~~~~~ 160 (340)
..+++|+..|+.+. + -+.++|++.|+ ++|.|.+-+...
T Consensus 170 ----~~~~ai~~~~d~~a-------~----g~~~~l~~~g~~vp~di~vigfd~~~ 210 (265)
T cd01543 170 ----PKPVGIFACTDARA-------R----QLLEACRRAGIAVPEEVAVLGVDNDE 210 (265)
T ss_pred ----CCCcEEEecChHHH-------H----HHHHHHHHhCCCCCCceEEEeeCCch
Confidence 13567877776642 1 23345566676 467776666543
No 60
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=32.63 E-value=63 Score=31.30 Aligned_cols=216 Identities=14% Similarity=0.064 Sum_probs=106.6
Q ss_pred HHHHHHhcCCCEEE--EeeCCCchhh-hhh-----------cHHHHHHHHHHhhhhhccCC-ceEEEEEeecccccCCc-
Q 043597 65 EILEALSGTNLVVT--IGVPNEAINY-VAS-----------SQDAADKWVQDHIITYVRKG-VRFRYLCVGNEVIPGIL- 128 (340)
Q Consensus 65 ~vl~A~~~~gi~v~--lGv~n~~~~~-~a~-----------~~~~a~~wv~~~v~~~~~~~-~~I~~I~VGNEvl~~~~- 128 (340)
.+++-++..||+|- .=||-...+. +.. -.....+++++.+..| .. .+|...=|=||++..+.
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y--~~~g~i~~WDVvNE~i~~~~~ 140 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY--KDKGRIYAWDVVNEAIDDDGN 140 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT--TTTTTESEEEEEES-B-TTSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh--ccccceEEEEEeeecccCCCc
Confidence 46777778888764 3344332222 111 1233456677766666 33 47889888899997531
Q ss_pred --------H------hHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcccCcchhhhhhhhhHHhhhcCCc
Q 043597 129 --------A------TCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSP 194 (340)
Q Consensus 129 --------~------~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~~l~fL~~~~d~ 194 (340)
. ..+..+.+-.|++..++ +.---+ .+++ .++-...+..+++.|.+.+-+
T Consensus 141 ~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a-----~L~~ND-y~~~-----------~~~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 141 PGGLRDSPWYDALGPDYIADAFRAAREADPNA-----KLFYND-YNIE-----------SPAKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTS-----EEEEEE-SSTT-----------STHHHHHHHHHHHHHHHTTHC
T ss_pred cccccCChhhhcccHhHHHHHHHHHHHhCCCc-----EEEecc-cccc-----------chHHHHHHHHHHHHHHhCCCc
Confidence 2 34445555566655422 222111 1111 111123355666666654322
Q ss_pred eeeeccccccccCCCCCcccccccccCCcccCCCCcccccHHHHHHHHHHHHHHHhcCCCCccEEEeeecCCCCCCCC-C
Q 043597 195 LLINVYPYYALVEDPVHIPFEYALFTSRTPIRDGHLEYYNLFDAMVDAFVAAMVRVVQREDVKLVVSETGWPTDGRIG-Y 273 (340)
Q Consensus 195 ~~vN~yPyf~~~~~~~~~~l~~alf~~~~~~~~~~~~y~n~fda~~da~~~al~k~~g~~~~~vvItETGWPs~G~~~-~ 273 (340)
+|--=||.+ .... +. .+.+..+|++. ..-+++|.|||--=....... .
T Consensus 204 -------------------IdgIG~Q~H-~~~~----~~------~~~i~~~l~~~-~~~Gl~i~ITElDv~~~~~~~~~ 252 (320)
T PF00331_consen 204 -------------------IDGIGLQSH-FDAG----YP------PEQIWNALDRF-ASLGLPIHITELDVRDDDNPPDA 252 (320)
T ss_dssp -------------------S-EEEEEEE-EETT----SS------HHHHHHHHHHH-HTTTSEEEEEEEEEESSSTTSCH
T ss_pred -------------------cceechhhc-cCCC----CC------HHHHHHHHHHH-HHcCCceEEEeeeecCCCCCcch
Confidence 222222221 0000 00 33444456665 445699999998544443321 2
Q ss_pred CCHHHHHHHHHHHHHhHHhcCCCCCCCCCceeE-EEEEeecCC-CCCCCCccceeeecCCCcccc
Q 043597 274 AITDYARTYNNKLREHAIVSGRTPRKADINLEV-YIFAMFNED-LKTPEEEKNFGTFYPNFTEKY 336 (340)
Q Consensus 274 as~~na~~y~~~~i~~~~~~~Gtp~rpg~~~~~-y~F~~fDe~-wK~g~~E~~wGlf~~d~~~ky 336 (340)
...+.|+.+++++++.+.+.. +. .++. .+-.+.|.. |.+...-.+=+||+.|.+||-
T Consensus 253 ~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 253 EEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKP 311 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-H
T ss_pred HHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCH
Confidence 347778899999999887531 01 1333 444455533 554211244579999999985
No 61
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=32.45 E-value=2.8e+02 Score=26.17 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=59.3
Q ss_pred hcCCCEEEEeeCCC-----chhhhhhcHHHHHHH---HHHhhhhhccCCceEEEEEeecccccCC----cHhHHHHHHHH
Q 043597 71 SGTNLVVTIGVPNE-----AINYVASSQDAADKW---VQDHIITYVRKGVRFRYLCVGNEVIPGI----LATCVEPAIMN 138 (340)
Q Consensus 71 ~~~gi~v~lGv~n~-----~~~~~a~~~~~a~~w---v~~~v~~~~~~~~~I~~I~VGNEvl~~~----~~~~ll~am~~ 138 (340)
++.|+||++.|... ....+.++.+..... +.+.+..| .+.+|-+==|..... ........|+.
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y-----~~DGidiD~e~~~~~~~~~~~~~~~~~l~~ 144 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKY-----GFDGIDIDWEYPSSSGDPQDKDNYTAFLKE 144 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHH-----T-SEEEEEESSTTSTSSTTHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhccc-----Ccceeeeeeeeccccccchhhhhhhhhhhh
Confidence 45699998877654 233444443322222 33334444 355666644554432 57788899999
Q ss_pred HHHHHHHcCC--CceEEeeeeecccccccCCCCCcccCcchhhhhhhhhHHhhhcCCceeeecccccc
Q 043597 139 LHNSVRKAGY--DFIFVTTAVAANVLGTSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINVYPYYA 204 (340)
Q Consensus 139 v~~aL~~~gl--~~I~VsT~~~~~~~~~s~pPs~g~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~ 204 (340)
+|.+|++.+- +...++.+...... ....+ -+.-|.+..|++.+-.|-|..
T Consensus 145 L~~~l~~~~~~~~~~~ls~a~p~~~~--------------~~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 145 LRKALKRANRSGKGYILSVAVPPSPD--------------YYDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHHHHHSTSEEEEEEECSHH--------------HHTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hhhhhcccccccceeEEeeccccccc--------------ccccc--ccccccccccccccccccCCC
Confidence 9999988521 12334444211100 00111 123455677888888887766
No 62
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=32.07 E-value=52 Score=32.86 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEE
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVT 78 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~ 78 (340)
.+.|+. .|+++||+. .+|.=..++.+.||+|.
T Consensus 331 AqILr~---LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQD---LGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHH---cCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 679999 899999999 67888888999999987
No 63
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=95 Score=26.00 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEeeC
Q 043597 40 KQVIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVP 82 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv~ 82 (340)
..+.++|+. +|++.|=+...-+..+.+|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~---~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVD---EGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHH---cCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 357889999 8999999988889999999999999999977
No 64
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.14 E-value=5.8e+02 Score=25.61 Aligned_cols=138 Identities=13% Similarity=0.120 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHhccccCCccEEEEecCC--------------hHHHHHHhc-CCC-EEEEeeCCCchhhhhhcHHHHHHH
Q 043597 36 LPSPKQVIDFLTKNFSNKIGLIRIYDAN--------------IEILEALSG-TNL-VVTIGVPNEAINYVASSQDAADKW 99 (340)
Q Consensus 36 ~ps~~~v~~llk~~~~~~~~~VRiY~~d--------------~~vl~A~~~-~gi-~v~lGv~n~~~~~~a~~~~~a~~w 99 (340)
.-++++|++.++.+...|++.|.+.+.| .++|+++.. .|+ .+-++..+. ..+. ...
T Consensus 152 srs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~i~--~el---- 223 (418)
T PRK14336 152 SRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHP--KDIS--QKL---- 223 (418)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccCh--hhcC--HHH----
Confidence 4567888765554333689888888654 135555554 232 343332211 1121 111
Q ss_pred HHHhhhhhccCCceEEEEEeeccccc----C----C-cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCC
Q 043597 100 VQDHIITYVRKGVRFRYLCVGNEVIP----G----I-LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQ 170 (340)
Q Consensus 100 v~~~v~~~~~~~~~I~~I~VGNEvl~----~----~-~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~ 170 (340)
+ +.+..+ + .....+.+|=|-.. + . +..+...+++.+|+++ .++.++|..-. .||
T Consensus 224 l-~~l~~~--~-~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----pgi~i~~d~Iv-----GfP--- 286 (418)
T PRK14336 224 I-DAMAHL--P-KVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAM-----PDISLQTDLIV-----GFP--- 286 (418)
T ss_pred H-HHHHhc--C-ccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhC-----CCCEEEEEEEE-----ECC---
Confidence 1 112111 1 12345666644332 1 2 5777888888887764 24556554322 344
Q ss_pred cccCcchhhhhhhhhHHhhhcCCceeeeccccc
Q 043597 171 GQFAPDVADVMSSITHCLYSLGSPLLINVYPYY 203 (340)
Q Consensus 171 g~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf 203 (340)
.|-...+...++|+.+.. +-.+|+++|-
T Consensus 287 ----GET~edf~~tl~fi~~~~-~~~~~v~~ys 314 (418)
T PRK14336 287 ----SETEEQFNQSYKLMADIG-YDAIHVAAYS 314 (418)
T ss_pred ----CCCHHHHHHHHHHHHhcC-CCEEEeeecC
Confidence 122345677788887643 3345555554
No 65
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=29.92 E-value=46 Score=29.18 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCEEEEeeCCC
Q 043597 65 EILEALSGTNLVVTIGVPNE 84 (340)
Q Consensus 65 ~vl~A~~~~gi~v~lGv~n~ 84 (340)
.+|+++.+.||+|++|++.+
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCC
Confidence 58899999999999999965
No 66
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=29.88 E-value=4e+02 Score=26.77 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=68.9
Q ss_pred CCHHHHHHHHhccccCCccEEEEecCC--------------hHHHHHHhcCC-CEEEEeeCCCchhhhhhcHHHHHHHHH
Q 043597 37 PSPKQVIDFLTKNFSNKIGLIRIYDAN--------------IEILEALSGTN-LVVTIGVPNEAINYVASSQDAADKWVQ 101 (340)
Q Consensus 37 ps~~~v~~llk~~~~~~~~~VRiY~~d--------------~~vl~A~~~~g-i~v~lGv~n~~~~~~a~~~~~a~~wv~ 101 (340)
-++++|++.++.+...|++.|.+++.| .++++++++.+ ++- +.+-.-....+. .. +-
T Consensus 164 r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~-~r~~~~~p~~~~--~e-----ll 235 (430)
T TIGR01125 164 RPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYW-IRMHYLYPDELT--DD-----VI 235 (430)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccE-EEEccCCcccCC--HH-----HH
Confidence 467888775555333688888876421 34777777655 432 211100001121 11 11
Q ss_pred HhhhhhccCCceEEEEEeecccccC--------C-cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcc
Q 043597 102 DHIITYVRKGVRFRYLCVGNEVIPG--------I-LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQ 172 (340)
Q Consensus 102 ~~v~~~~~~~~~I~~I~VGNEvl~~--------~-~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~ 172 (340)
+.+... + ....++.+|=|-... . +..+.+.+++.+|++. . .+.+++.. + -.+|
T Consensus 236 ~~~~~~--~-~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~----~-~i~i~~~~----I-~G~P----- 297 (430)
T TIGR01125 236 DLMAEG--P-KVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKC----P-DAVLRTTF----I-VGFP----- 297 (430)
T ss_pred HHHhhC--C-cccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhC----C-CCeEeEEE----E-EECC-----
Confidence 112111 1 113355555443321 1 5667777777777652 1 24455432 1 1233
Q ss_pred cCcchhhhhhhhhHHhhhcCCceeeecccccccc
Q 043597 173 FAPDVADVMSSITHCLYSLGSPLLINVYPYYALV 206 (340)
Q Consensus 173 F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~~ 206 (340)
.|-.+.+...++|+.+. .+-.+++++|--.-
T Consensus 298 --gET~e~~~~t~~fl~~~-~~~~~~~~~~sp~p 328 (430)
T TIGR01125 298 --GETEEDFQELLDFVEEG-QFDRLGAFTYSPEE 328 (430)
T ss_pred --CCCHHHHHHHHHHHHhc-CCCEEeeeeccCCC
Confidence 12234577888888764 34556777765543
No 67
>PF15560 Imm8: Immunity protein 8
Probab=29.55 E-value=1.3e+02 Score=25.42 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=41.4
Q ss_pred EEEEEeecccccCCcHhHHHHHHHHHHHHHHHc-------CCCceEEeeeeecccccccCCCCCcccCcc
Q 043597 114 FRYLCVGNEVIPGILATCVEPAIMNLHNSVRKA-------GYDFIFVTTAVAANVLGTSYPPSQGQFAPD 176 (340)
Q Consensus 114 I~~I~VGNEvl~~~~~~~ll~am~~v~~aL~~~-------gl~~I~VsT~~~~~~~~~s~pPs~g~F~~~ 176 (340)
+-.+++|-|.. ....+.|.++++|+.|+.. |++++++.--.+.|+ ++|=|++|.+..-
T Consensus 4 ~ln~ViGG~~~---~~~~~~~~ir~mRk~lKk~F~~~~~e~l~k~kI~l~~sGdv--S~Y~~~sGIyq~r 68 (133)
T PF15560_consen 4 ILNIVIGGQID---AEKNLHSLIREMRKSLKKQFESIEFEGLDKIKINLYFSGDV--SSYCDKSGIYQCR 68 (133)
T ss_pred EEEEEEcCcch---HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhEeEEEEEcCch--hhhcCCCCcchhH
Confidence 34566775554 2356889999999998764 566788888777776 4677888988643
No 68
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=29.50 E-value=61 Score=32.33 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=30.3
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEee
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGV 81 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv 81 (340)
.|.|+. .|+++||+.. +|.=..++.+.||+|.==+
T Consensus 328 aqIL~~---Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRD---LGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHH---cCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 678999 8999999999 8888888999999987333
No 69
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=28.99 E-value=1.8e+02 Score=28.69 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=34.5
Q ss_pred cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcccC-cchhhhhhhhhHHhhhc
Q 043597 128 LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQFA-PDVADVMSSITHCLYSL 191 (340)
Q Consensus 128 ~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F~-~~~~~~l~~~l~fL~~~ 191 (340)
+...+...|++.|++|++.= +...|+-+||.+.+. .|.|. -.+. -..+++|.++
T Consensus 317 sik~MssRI~~MR~aLrd~L---~aL~TPGtWDHI~~Q----iGMFSyTGLt---p~qV~~li~~ 371 (410)
T KOG1412|consen 317 SIKTMSSRIKKMRTALRDHL---VALKTPGTWDHITQQ----IGMFSYTGLT---PAQVDHLIEN 371 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhcCCCCcHHHHHhh----ccceeecCCC---HHHHHHHHHh
Confidence 45566778888888887541 578899999888663 46663 1222 2345666543
No 70
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.84 E-value=6.1e+02 Score=25.52 Aligned_cols=139 Identities=9% Similarity=0.107 Sum_probs=67.8
Q ss_pred CCHHHHHHHHhccccCCccEEEEecCC--------------hHHHHHHhc-CCC-EEEEeeCCCchhhhhhcHHHHHHHH
Q 043597 37 PSPKQVIDFLTKNFSNKIGLIRIYDAN--------------IEILEALSG-TNL-VVTIGVPNEAINYVASSQDAADKWV 100 (340)
Q Consensus 37 ps~~~v~~llk~~~~~~~~~VRiY~~d--------------~~vl~A~~~-~gi-~v~lGv~n~~~~~~a~~~~~a~~wv 100 (340)
-++++|++.++.+...|+..|.+.+.| ...|+.+.. .|+ .+-++.-+. ..+..+ - ...+
T Consensus 176 r~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P--~~i~~e--l-l~~l 250 (439)
T PRK14328 176 RKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHP--KDLSDD--L-IEAI 250 (439)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCCh--hhcCHH--H-HHHH
Confidence 356888765554333688888886543 245555554 343 233322111 112111 1 1112
Q ss_pred HHhhhhhccCCceEEEEEeeccc----ccC----C-cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCc
Q 043597 101 QDHIITYVRKGVRFRYLCVGNEV----IPG----I-LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQG 171 (340)
Q Consensus 101 ~~~v~~~~~~~~~I~~I~VGNEv----l~~----~-~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g 171 (340)
++ . + .....+.+|=|- +.+ . +.++.+.+++.+++.+ .++.++|..-. .+|
T Consensus 251 ~~----~--~-~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----~~i~i~~d~Iv-----G~P---- 309 (439)
T PRK14328 251 AD----C--D-KVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNI-----PDVAITTDIIV-----GFP---- 309 (439)
T ss_pred Hh----C--C-CcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhC-----CCCEEEEEEEE-----ECC----
Confidence 21 1 1 124467777332 222 2 6777778887777653 23455543221 233
Q ss_pred ccCcchhhhhhhhhHHhhhcCCceeeeccccccc
Q 043597 172 QFAPDVADVMSSITHCLYSLGSPLLINVYPYYAL 205 (340)
Q Consensus 172 ~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~ 205 (340)
.|-.+.+...++|+.+. .+-.+++++|--.
T Consensus 310 ---gET~ed~~~tl~~i~~l-~~~~~~~~~~sp~ 339 (439)
T PRK14328 310 ---GETEEDFEETLDLVKEV-RYDSAFTFIYSKR 339 (439)
T ss_pred ---CCCHHHHHHHHHHHHhc-CCCcccceEecCC
Confidence 12224466777887654 3445677766533
No 71
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.57 E-value=1.2e+02 Score=26.64 Aligned_cols=60 Identities=20% Similarity=0.404 Sum_probs=39.1
Q ss_pred EEEEecCC-hHHHHHH-----h-cCCCEEEEeeCCCchhhhhhcHHHHHHHHHHhhhhhccCCceEEEEEeecccc
Q 043597 56 LIRIYDAN-IEILEAL-----S-GTNLVVTIGVPNEAINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVI 124 (340)
Q Consensus 56 ~VRiY~~d-~~vl~A~-----~-~~gi~v~lGv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl 124 (340)
.+.+||+. .++++.+ + ..|+-+|-.+.|++ ++ ++.+.|+. .|..| .|.++.-|.|||..=
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNee--Sf----~svqdw~t-qIkty--sw~naqvilvgnKCD 137 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE--SF----NSVQDWIT-QIKTY--SWDNAQVILVGNKCD 137 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHH--HH----HHHHHHHH-Hheee--eccCceEEEEecccC
Confidence 45677776 3333322 2 25777888888764 34 44566764 56666 689999999998763
No 72
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.02 E-value=6.7e+02 Score=25.68 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=72.3
Q ss_pred ceeEEecCCCCCCCC----HHHHHHHHhccccCCccEEEEecCC-----hHHHHHHhcC-CCEEEEeeCCCchhhhhhcH
Q 043597 24 DVGINYGREGDNLPS----PKQVIDFLTKNFSNKIGLIRIYDAN-----IEILEALSGT-NLVVTIGVPNEAINYVASSQ 93 (340)
Q Consensus 24 ~~Gv~Yg~~~~~~ps----~~~v~~llk~~~~~~~~~VRiY~~d-----~~vl~A~~~~-gi~v~lGv~n~~~~~~a~~~ 93 (340)
.+|.|-+.||.|++. -.+.++.+..+ .|+.+||+=..+ .+++++++.+ .+-=.+-+|.. +-+
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I--~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQ---sGs--- 266 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKI--PGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQ---SGS--- 266 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcC--CCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccc---cCC---
Confidence 458888888877652 34444433333 577888887665 3577777764 33223333321 110
Q ss_pred HHHHHHHHHhhhhhccCCceEEEEEeecccccCC-cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCcc
Q 043597 94 DAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGI-LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQ 172 (340)
Q Consensus 94 ~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~~-~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~ 172 (340)
+. -++. +.|. +.++.+..++.+|++... +-++|.. +. .|| |
T Consensus 267 d~---ILk~---------------------M~R~yt~e~~~~~i~k~R~~~Pd-----~~i~tDi----IV-GFP---g- 308 (437)
T COG0621 267 DR---ILKR---------------------MKRGYTVEEYLEIIEKLRAARPD-----IAISTDI----IV-GFP---G- 308 (437)
T ss_pred HH---HHHH---------------------hCCCcCHHHHHHHHHHHHHhCCC-----ceEeccE----EE-ECC---C-
Confidence 11 0221 1122 577888888888888754 4455432 21 344 1
Q ss_pred cCcchhhhhhhhhHHhhhcCCceeeeccccccccC
Q 043597 173 FAPDVADVMSSITHCLYSLGSPLLINVYPYYALVE 207 (340)
Q Consensus 173 F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~~~ 207 (340)
|--......++|+. ..-|=.+|+++|=..-.
T Consensus 309 ---ETeedFe~tl~lv~-e~~fd~~~~F~YSpRpG 339 (437)
T COG0621 309 ---ETEEDFEETLDLVE-EVRFDRLHVFKYSPRPG 339 (437)
T ss_pred ---CCHHHHHHHHHHHH-HhCCCEEeeeecCCCCC
Confidence 11223445556554 44666788888754443
No 73
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=27.82 E-value=86 Score=23.28 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhhhhccCCceEEEEEeecccccCC-----cHhHHHHHHHHHHHHHHHc
Q 043597 94 DAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGI-----LATCVEPAIMNLHNSVRKA 146 (340)
Q Consensus 94 ~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~~-----~~~~ll~am~~v~~aL~~~ 146 (340)
..-..|+++||.- |+|.++.+ ....|+|+++..++.++..
T Consensus 11 ~iLi~WLedNi~~-------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 11 EILIAWLEDNIDC-------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHcccCC-------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 4456799988743 33444431 4667899999998888743
No 74
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=27.73 E-value=1.3e+02 Score=24.88 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHHhccccCCccEEEEe--c--------CC---hHHHHHHhcCCCEEEE
Q 043597 40 KQVIDFLTKNFSNKIGLIRIY--D--------AN---IEILEALSGTNLVVTI 79 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY--~--------~d---~~vl~A~~~~gi~v~l 79 (340)
+++.+..+. +|++.|+++ + +. ..+|++++..||+|..
T Consensus 53 ~~~~~~~~~---~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKE---RGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHH---cCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 445667777 899988887 3 33 4699999999998753
No 75
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.59 E-value=4.8e+02 Score=23.83 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=34.8
Q ss_pred EEecCCCCCCCCHHHHHHHHhccccCCccEEEEecC---C-hHHHHHHhcCCCEEEE
Q 043597 27 INYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDA---N-IEILEALSGTNLVVTI 79 (340)
Q Consensus 27 v~Yg~~~~~~ps~~~v~~llk~~~~~~~~~VRiY~~---d-~~vl~A~~~~gi~v~l 79 (340)
+|.+..-.++ +.++.++.++. .||+.|-+... + ..+.+.++.+||++..
T Consensus 6 ~~~~~~~~~~-~l~~~l~~~a~---~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 6 ANLSMLFGEY-DFLARFEKAAQ---CGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeehhccCC-CHHHHHHHHHH---hCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 4444433344 35777888888 89999998764 3 4577788899999975
No 76
>PRK08815 GTP cyclohydrolase; Provisional
Probab=27.57 E-value=79 Score=31.64 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.9
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEeeC
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVP 82 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv~ 82 (340)
.|.|+. .|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~d---LGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRG---LGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHH---cCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 678999 8999999999999888899999999974444
No 77
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.52 E-value=1.3e+02 Score=25.23 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=36.3
Q ss_pred CCHHHHHHHHhccccCCccEEEEecCC-----hHHHHHHhcCCCEEEEeeCC
Q 043597 37 PSPKQVIDFLTKNFSNKIGLIRIYDAN-----IEILEALSGTNLVVTIGVPN 83 (340)
Q Consensus 37 ps~~~v~~llk~~~~~~~~~VRiY~~d-----~~vl~A~~~~gi~v~lGv~n 83 (340)
.+++++++..+. .|++.|=+=|-+ +...+.++..||++++|+-.
T Consensus 16 ~~~~e~v~~A~~---~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 16 DSPEEYVEQAKE---KGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSHHHHHHHHHH---TTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHH---cCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 488999999888 899999888754 45666777799999999885
No 78
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=27.47 E-value=80 Score=31.75 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=32.4
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEeeC
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVP 82 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv~ 82 (340)
.+.|+. .|+++||+...+|.=..++.+.||+|.=-++
T Consensus 320 AqIL~d---LGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKA---LGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 678999 8999999999999888899999999984444
No 79
>PLN03059 beta-galactosidase; Provisional
Probab=27.08 E-value=9.2e+02 Score=26.96 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=71.5
Q ss_pred CHHHH---HHHHhccccCCccEEEEecC------C------------hHHHHHHhcCCCEEEEeeC--------------
Q 043597 38 SPKQV---IDFLTKNFSNKIGLIRIYDA------N------------IEILEALSGTNLVVTIGVP-------------- 82 (340)
Q Consensus 38 s~~~v---~~llk~~~~~~~~~VRiY~~------d------------~~vl~A~~~~gi~v~lGv~-------------- 82 (340)
+|+.. ++.+|. .|++.|-+|-. . ..-++.+++.|+.|+|=.-
T Consensus 57 ~p~~W~d~L~k~Ka---~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~ 133 (840)
T PLN03059 57 TPEMWPDLIQKAKD---GGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPV 133 (840)
T ss_pred CHHHHHHHHHHHHH---cCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCch
Confidence 45544 556677 89999999931 1 2467888899999987432
Q ss_pred -C---Cchhhhhhc---HHHHHHHHHHhhhhh------ccCCceEEEEEeecccccCC--cHhHHHHHHHHHHHHHHHcC
Q 043597 83 -N---EAINYVASS---QDAADKWVQDHIITY------VRKGVRFRYLCVGNEVIPGI--LATCVEPAIMNLHNSVRKAG 147 (340)
Q Consensus 83 -n---~~~~~~a~~---~~~a~~wv~~~v~~~------~~~~~~I~~I~VGNEvl~~~--~~~~ll~am~~v~~aL~~~g 147 (340)
. .++.-=..+ ..+.++|+...+... +.....|..+=|-||.=.-. .-..=..+|+.+++++++.|
T Consensus 134 WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 134 WLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred hhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcC
Confidence 1 111000112 245566766543322 11345788999999963211 11223679999999999999
Q ss_pred CCceEEeeeee
Q 043597 148 YDFIFVTTAVA 158 (340)
Q Consensus 148 l~~I~VsT~~~ 158 (340)
++ ||.-|.+.
T Consensus 214 i~-VPl~t~dg 223 (840)
T PLN03059 214 TG-VPWVMCKQ 223 (840)
T ss_pred CC-cceEECCC
Confidence 84 77777654
No 80
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=26.96 E-value=1.5e+02 Score=24.18 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHHHHhccccCCccEEEEe--cCC---hHHHHHHhcCCCEEEE
Q 043597 41 QVIDFLTKNFSNKIGLIRIY--DAN---IEILEALSGTNLVVTI 79 (340)
Q Consensus 41 ~v~~llk~~~~~~~~~VRiY--~~d---~~vl~A~~~~gi~v~l 79 (340)
.+.+.++. .|++.|+++ +.. ..++++++.+|++|.-
T Consensus 51 ~~~~~~~~---~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKE---LGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHC---TTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566777 899999888 333 4689999999998654
No 81
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=26.58 E-value=80 Score=31.19 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=30.2
Q ss_pred HHHHHhccccCCccEEEEecCC-hHHHHHHhcCCCEEE
Q 043597 42 VIDFLTKNFSNKIGLIRIYDAN-IEILEALSGTNLVVT 78 (340)
Q Consensus 42 v~~llk~~~~~~~~~VRiY~~d-~~vl~A~~~~gi~v~ 78 (340)
-.+.|+. .|+++||+...+ |.=..++.+.||+|.
T Consensus 300 gaqIL~d---LGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKY---LGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHH---CCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4688999 899999999999 887888999999986
No 82
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=26.53 E-value=3.6e+02 Score=26.40 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=36.6
Q ss_pred cCceeEEecCCCCCCCCHHHHHHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEeeCC
Q 043597 22 SGDVGINYGREGDNLPSPKQVIDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVPN 83 (340)
Q Consensus 22 ~~~~Gv~Yg~~~~~~ps~~~v~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv~n 83 (340)
..-+|||.-...++ |..++.++.+.. .+...|=+..-+|...+.++..|++|+.-|+.
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e---~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRA---IKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHh---cCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 34678877544332 333445555555 56776666555565568888899999987774
No 83
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=26.51 E-value=86 Score=31.68 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=31.8
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEeeC
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVP 82 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv~ 82 (340)
.+.|+. .|+++||+...+|.=..++.+.||+|.==++
T Consensus 339 aqIL~~---LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQILVD---LGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 678999 8999999999999888899999999973333
No 84
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=25.17 E-value=91 Score=32.01 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=31.9
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEeeC
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVP 82 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv~ 82 (340)
.+.|+. .|+++||+...+|.=+.++.+.||+|.==++
T Consensus 373 AqIL~d---LGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRD---LGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 678999 8999999999999888899999999973343
No 85
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=25.13 E-value=91 Score=32.83 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=32.6
Q ss_pred HHHHhccccCCccEEEEecCChHHHHHHhcCCCEEEEeeC
Q 043597 43 IDFLTKNFSNKIGLIRIYDANIEILEALSGTNLVVTIGVP 82 (340)
Q Consensus 43 ~~llk~~~~~~~~~VRiY~~d~~vl~A~~~~gi~v~lGv~ 82 (340)
++.|+. .|+++||+...+|.=+.++.+.||+|.==++
T Consensus 343 AQIL~d---LGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILND---LGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHH---cCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 678999 8999999999999989999999999874444
No 86
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=24.19 E-value=57 Score=32.59 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=24.9
Q ss_pred HHHHHHhccccCCc---cEEEEe--cCC-hHHHHHHhc-CCCEEEEeeCC
Q 043597 41 QVIDFLTKNFSNKI---GLIRIY--DAN-IEILEALSG-TNLVVTIGVPN 83 (340)
Q Consensus 41 ~v~~llk~~~~~~~---~~VRiY--~~d-~~vl~A~~~-~gi~v~lGv~n 83 (340)
.+.+++.-.+.+|| +..|-| +.. +-+-+|+++ .--+|.|+--.
T Consensus 35 ~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKl 84 (391)
T COG1453 35 NANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKL 84 (391)
T ss_pred HHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeec
Confidence 34444433233465 566778 444 456688875 56778877654
No 87
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=23.76 E-value=3e+02 Score=25.74 Aligned_cols=36 Identities=14% Similarity=-0.020 Sum_probs=26.5
Q ss_pred CCccEEEeeecCCCCCCCCCCCHHHHHHHHHHHHHhHH
Q 043597 254 EDVKLVVSETGWPTDGRIGYAITDYARTYNNKLREHAI 291 (340)
Q Consensus 254 ~~~~vvItETGWPs~G~~~~as~~na~~y~~~~i~~~~ 291 (340)
++.-+.|||+|.+..... ...+.|+.++...++.+.
T Consensus 89 ~~~~~aIGEiGLD~~~~~--~~~~~Q~~vf~~ql~lA~ 124 (258)
T PRK11449 89 PAKVVAVGEIGLDLFGDD--PQFERQQWLLDEQLKLAK 124 (258)
T ss_pred CCCEEEEEecccCCCCCC--CCHHHHHHHHHHHHHHHH
Confidence 335678999999975432 456778888888888775
No 88
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.76 E-value=7.8e+02 Score=25.00 Aligned_cols=194 Identities=9% Similarity=0.090 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHhccccCCccEEEEecCC-----------hHHHHHHhc-CCC-EEEEeeCCCchhhhhhcHHHHHHHHHH
Q 043597 36 LPSPKQVIDFLTKNFSNKIGLIRIYDAN-----------IEILEALSG-TNL-VVTIGVPNEAINYVASSQDAADKWVQD 102 (340)
Q Consensus 36 ~ps~~~v~~llk~~~~~~~~~VRiY~~d-----------~~vl~A~~~-~gi-~v~lGv~n~~~~~~a~~~~~a~~wv~~ 102 (340)
.-++++|++.++.+...|++.|.+.+.| ...|+++.. .|+ .+-++..+.. .+..+ +-+
T Consensus 182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--~~~~e-------ll~ 252 (449)
T PRK14332 182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPK--DFPDH-------LLS 252 (449)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcc--cCCHH-------HHH
Confidence 3467888765555334789999988654 235555543 232 2333332211 12111 111
Q ss_pred hhhhhccCCceEEEEEee-----cccccC---C-cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCCccc
Q 043597 103 HIITYVRKGVRFRYLCVG-----NEVIPG---I-LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQGQF 173 (340)
Q Consensus 103 ~v~~~~~~~~~I~~I~VG-----NEvl~~---~-~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~g~F 173 (340)
.+... + ....++.+| +++|-. . +..+...+++.+|++.. ++.++|.. +. .||
T Consensus 253 ~m~~~--~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p-----~i~i~td~----Iv-GfP------ 313 (449)
T PRK14332 253 LMAKN--P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP-----DVGITTDI----IV-GFP------ 313 (449)
T ss_pred HHHhC--C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC-----CCEEEEEE----Ee-eCC------
Confidence 22111 1 124577777 344322 2 67788888888887642 34555532 21 244
Q ss_pred CcchhhhhhhhhHHhhhcCCceeeeccccccccCCCCCcccccccccCCcccCCCCcccccHHHHHHHHHHHHHHHhcCC
Q 043597 174 APDVADVMSSITHCLYSLGSPLLINVYPYYALVEDPVHIPFEYALFTSRTPIRDGHLEYYNLFDAMVDAFVAAMVRVVQR 253 (340)
Q Consensus 174 ~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~~~~~~~~~~y~n~fda~~da~~~al~k~~g~ 253 (340)
.|-...+...++|+.+.. +=.+++|+|--....+ .+..+...+++......+..+.+.|-.-.....++..|
T Consensus 314 -gET~edf~~tl~~v~~l~-~~~~~~f~ys~~~GT~-----a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG- 385 (449)
T PRK14332 314 -NETEEEFEDTLAVVREVQ-FDMAFMFKYSEREGTM-----AKRKLPDNVPEEVKSARLTKLVDLQTSISHEQNRARIG- 385 (449)
T ss_pred -CCCHHHHHHHHHHHHhCC-CCEEEEEEecCCCCCh-----hHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 222344667788876543 3456666654443222 11122211222222333444444443333333344313
Q ss_pred CCccEEEeeecC
Q 043597 254 EDVKLVVSETGW 265 (340)
Q Consensus 254 ~~~~vvItETGW 265 (340)
.-.+|+|.|.+.
T Consensus 386 ~~~~vlve~~~~ 397 (449)
T PRK14332 386 RVYSILIENTSR 397 (449)
T ss_pred CEEEEEEEeccC
Confidence 456888876544
No 89
>CHL00041 rps11 ribosomal protein S11
Probab=23.70 E-value=1.8e+02 Score=24.03 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=26.5
Q ss_pred HHHHHHHhccccCCccEEEEe--cCC---hHHHHHHhcCCCEEE
Q 043597 40 KQVIDFLTKNFSNKIGLIRIY--DAN---IEILEALSGTNLVVT 78 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY--~~d---~~vl~A~~~~gi~v~ 78 (340)
+++.+.++. .|++.|+++ +.. ..++++++..|++|.
T Consensus 63 ~~~~~~~~~---~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVID---QGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHH---cCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 334566666 799988888 332 568999999999875
No 90
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=23.36 E-value=1.7e+02 Score=24.87 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=27.8
Q ss_pred HHHHHHHhccccCCccEEEEe--c--------CC---hHHHHHHhcCCCEEEE
Q 043597 40 KQVIDFLTKNFSNKIGLIRIY--D--------AN---IEILEALSGTNLVVTI 79 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY--~--------~d---~~vl~A~~~~gi~v~l 79 (340)
+++.+.++. +|++.|+++ + +. ..+|++++..|++|..
T Consensus 60 e~~~~~~~~---~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKE---KGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHH---cCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 445667777 899988887 3 33 4699999999999753
No 91
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=23.26 E-value=7.4e+02 Score=24.57 Aligned_cols=140 Identities=9% Similarity=0.071 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHhccccCCccEEEEecCC--------------hHHHHHHhcC-CC-EEEEeeCCCchhhhhhcHHHHHHH
Q 043597 36 LPSPKQVIDFLTKNFSNKIGLIRIYDAN--------------IEILEALSGT-NL-VVTIGVPNEAINYVASSQDAADKW 99 (340)
Q Consensus 36 ~ps~~~v~~llk~~~~~~~~~VRiY~~d--------------~~vl~A~~~~-gi-~v~lGv~n~~~~~~a~~~~~a~~w 99 (340)
.-++++|++.++.+...|++.|.+.+.| .++++++.+. |+ .+-++--. ...+. ..- ...
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~~--~el-l~~ 240 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDID--EEL-LEA 240 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhCC--HHH-HHH
Confidence 4577888776555334689999875422 2466666643 44 24443211 11121 111 111
Q ss_pred HHHhhhhhccCCceEEEEEeecccccC--------C-cHhHHHHHHHHHHHHHHHcCCCceEEeeeeecccccccCCCCC
Q 043597 100 VQDHIITYVRKGVRFRYLCVGNEVIPG--------I-LATCVEPAIMNLHNSVRKAGYDFIFVTTAVAANVLGTSYPPSQ 170 (340)
Q Consensus 100 v~~~v~~~~~~~~~I~~I~VGNEvl~~--------~-~~~~ll~am~~v~~aL~~~gl~~I~VsT~~~~~~~~~s~pPs~ 170 (340)
++++ + .....|.+|=|-... . +..+...+++.+|+.. . .+.+++..-. .+|
T Consensus 241 m~~~------~-~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~---gi~i~~~~Iv-----G~P--- 300 (414)
T TIGR01579 241 IASE------K-RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--P---DYAFGTDIIV-----GFP--- 300 (414)
T ss_pred HHhc------C-ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--C---CCeeeeeEEE-----ECC---
Confidence 2211 1 012356666554332 2 5667777777777642 2 2455553221 233
Q ss_pred cccCcchhhhhhhhhHHhhhcCCceeeeccccccc
Q 043597 171 GQFAPDVADVMSSITHCLYSLGSPLLINVYPYYAL 205 (340)
Q Consensus 171 g~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~ 205 (340)
.|-.+.+...++|+.+.. +-.+++|||--.
T Consensus 301 ----gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 301 ----GESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred ----CCCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 122345777788887643 445667766444
No 92
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.02 E-value=2.2e+02 Score=23.84 Aligned_cols=44 Identities=11% Similarity=0.366 Sum_probs=29.7
Q ss_pred CCHHHHHHHHhccccCCccEEEEecCC-------hHHHHHHhcC---CCEEEEe--eCC
Q 043597 37 PSPKQVIDFLTKNFSNKIGLIRIYDAN-------IEILEALSGT---NLVVTIG--VPN 83 (340)
Q Consensus 37 ps~~~v~~llk~~~~~~~~~VRiY~~d-------~~vl~A~~~~---gi~v~lG--v~n 83 (340)
-|++++++..++ .+.+.|=+-+.+ +.++++++.. .++|++| ++.
T Consensus 40 ~s~e~~v~aa~e---~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~ 95 (132)
T TIGR00640 40 QTPEEIARQAVE---ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPP 95 (132)
T ss_pred CCHHHHHHHHHH---cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCCh
Confidence 467788777666 677777776554 3566777665 4688888 554
No 93
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=22.56 E-value=7.2e+02 Score=24.18 Aligned_cols=127 Identities=9% Similarity=0.022 Sum_probs=74.4
Q ss_pred ccCCCCCcccCcchhhhhhhhhHHhhhcCCceeeeccccccccCCCCCcccccccccCC-c--------ccCCCCccccc
Q 043597 164 TSYPPSQGQFAPDVADVMSSITHCLYSLGSPLLINVYPYYALVEDPVHIPFEYALFTSR-T--------PIRDGHLEYYN 234 (340)
Q Consensus 164 ~s~pPs~g~F~~~~~~~l~~~l~fL~~~~d~~~vN~yPyf~~~~~~~~~~l~~alf~~~-~--------~~~~~~~~y~n 234 (340)
..+|...|.++++..+.++.+.+.+.+++..+.+.+.-- +.......+.. ....++ . +..-+...-..
T Consensus 62 ~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~--G~~~~~~~~~~-~~~~ps~~~~~~~~~~~~~mt~~eI~~ 138 (343)
T cd04734 62 SPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHL--GRRGDGDGSWL-PPLAPSAVPEPRHRAVPKAMEEEDIEE 138 (343)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCC--CcCcCcccCCC-cccCCCCCCCCCCCCCCCcCCHHHHHH
Confidence 345667788888877889999999999999988887531 21110000000 000001 0 00011111223
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccEEEeeecC-------CCCCC---CCCCCHHHHHHHHHHHHHhHHhcCCC
Q 043597 235 LFDAMVDAFVAAMVRVVQREDVKLVVSETGW-------PTDGR---IGYAITDYARTYNNKLREHAIVSGRT 296 (340)
Q Consensus 235 ~fda~~da~~~al~k~~g~~~~~vvItETGW-------Ps~G~---~~~as~~na~~y~~~~i~~~~~~~Gt 296 (340)
+.+...+|...|. ++ |+.+++|--.- |+ |..-. .++.|++|-.+|..++++.+++..|.
T Consensus 139 ii~~f~~AA~ra~-~a-GfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 139 IIAAFADAARRCQ-AG-GLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHHHHHHH-Hc-CCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 4455555555443 34 99889888755 64 42211 11789999999999999999876663
No 94
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.19 E-value=4e+02 Score=23.75 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCccEEEee-ecCCCCCCCC---CCCHHHHHHHHHHHHHhHH
Q 043597 236 FDAMVDAFVAAMVRVVQREDVKLVVSE-TGWPTDGRIG---YAITDYARTYNNKLREHAI 291 (340)
Q Consensus 236 fda~~da~~~al~k~~g~~~~~vvItE-TGWPs~G~~~---~as~~na~~y~~~~i~~~~ 291 (340)
|...++..+..+.+ ++|++||++.| .++|.. ... ..+.+......+..++.++
T Consensus 76 ~~~~~~~fv~~iR~--~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~ 132 (178)
T PF14606_consen 76 FRERLDGFVKTIRE--AHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLR 132 (178)
T ss_dssp HHHHHHHHHHHHHT--T-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555654 69999999999 455554 332 5677777777888888775
No 95
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=22.16 E-value=2.4e+02 Score=21.50 Aligned_cols=46 Identities=15% Similarity=-0.126 Sum_probs=30.5
Q ss_pred CCceEEEEEeecc-cccC--------C--cHhHHHHHHHHHHHHHHHcCCCceEEeee
Q 043597 110 KGVRFRYLCVGNE-VIPG--------I--LATCVEPAIMNLHNSVRKAGYDFIFVTTA 156 (340)
Q Consensus 110 ~~~~I~~I~VGNE-vl~~--------~--~~~~ll~am~~v~~aL~~~gl~~I~VsT~ 156 (340)
....|.+-=|+|| .... + ..+.+.+.|+++-+.+|+.+= ..+||+.
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP-~~pvt~g 63 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP-SQPVTSG 63 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T-TS-EE--
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC-CCcEEee
Confidence 4578999999999 4411 1 357788999999999998774 3567654
No 96
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=21.75 E-value=5e+02 Score=25.06 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=5.5
Q ss_pred CccEEEEecCC
Q 043597 53 KIGLIRIYDAN 63 (340)
Q Consensus 53 ~~~~VRiY~~d 63 (340)
++..|.+-+-|
T Consensus 136 ~I~~VilSGGD 146 (321)
T TIGR03822 136 EIWEVILTGGD 146 (321)
T ss_pred CccEEEEeCCC
Confidence 45555555444
No 97
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=21.57 E-value=5.9e+02 Score=25.46 Aligned_cols=102 Identities=13% Similarity=0.020 Sum_probs=60.4
Q ss_pred HHHHHHHhccccCCccEEEEecC----------Ch------------HHHHHHhcCCCEEEEeeCCCc-------h----
Q 043597 40 KQVIDFLTKNFSNKIGLIRIYDA----------NI------------EILEALSGTNLVVTIGVPNEA-------I---- 86 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY~~----------d~------------~vl~A~~~~gi~v~lGv~n~~-------~---- 86 (340)
++....+|+ .||+.|||.-+ +| ++++.+.+.||+|++-+-.-. .
T Consensus 76 ~~~~~~ik~---~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~ 152 (407)
T COG2730 76 EEDFDQIKS---AGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYT 152 (407)
T ss_pred hhHHHHHHH---cCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCccccc
Confidence 566778999 89999999733 21 356777889999999754311 1
Q ss_pred hhhhh---c-HHHHHHHHHHhhhhhccCCceEEEEEeeccccc---CCcHhHHH-HHHHHHHHHHHHc
Q 043597 87 NYVAS---S-QDAADKWVQDHIITYVRKGVRFRYLCVGNEVIP---GILATCVE-PAIMNLHNSVRKA 146 (340)
Q Consensus 87 ~~~a~---~-~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~---~~~~~~ll-~am~~v~~aL~~~ 146 (340)
..... + ......| +.....|. ....|.++-+=||... +..+.+-. +|...|++++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~w-~~ia~~f~-~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 153 SDYKEENENVEATIDIW-KFIANRFK-NYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred ccccccchhHHHHHHHH-HHHHHhcc-CCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 11111 0 1111222 22233443 4567777888899984 44444444 7777776555443
No 98
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=21.45 E-value=87 Score=26.11 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=27.3
Q ss_pred CCCCCcccCcchhhhhhhhhHHhhh--cCCceeeecccccccc
Q 043597 166 YPPSQGQFAPDVADVMSSITHCLYS--LGSPLLINVYPYYALV 206 (340)
Q Consensus 166 ~pPs~g~F~~~~~~~l~~~l~fL~~--~~d~~~vN~yPyf~~~ 206 (340)
.|..+..+..| +++..++.|... -+.+.++|+||+-+..
T Consensus 21 NPS~A~~~~~D--~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~ 61 (136)
T PF07799_consen 21 NPSTADAEKDD--PTIRRCINFARRWGYGGVIIVNLFPQRSTD 61 (136)
T ss_pred CCCCCCCcCCC--HHHHHHHHHHhhcCCCeEEEEEecccccCC
Confidence 34444445555 567778888764 3488899999998864
No 99
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=21.19 E-value=3.9e+02 Score=22.39 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCEEEEeeCCCchhhhhhcHHHHHHHHHHhhhhhccCCceEEEEEeecccccCC
Q 043597 65 EILEALSGTNLVVTIGVPNEAINYVASSQDAADKWVQDHIITYVRKGVRFRYLCVGNEVIPGI 127 (340)
Q Consensus 65 ~vl~A~~~~gi~v~lGv~n~~~~~~a~~~~~a~~wv~~~v~~~~~~~~~I~~I~VGNEvl~~~ 127 (340)
.+++.+++.|+.|.----.++...+..++. |++.+... +....=-+.|-.|++..+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~-----V~~~L~~~--G~e~LPitlVdGeiv~~G 86 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPE-----VNQLLQTE--GAEALPITLVDGEIVKTG 86 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHH-----HHHHHHHH---GGG-SEEEETTEEEEES
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHH-----HHHHHHHc--CcccCCEEEECCEEEEec
Confidence 356777788887776655555556665644 33333322 122222466677776553
No 100
>PRK05309 30S ribosomal protein S11; Validated
Probab=21.12 E-value=2.1e+02 Score=24.04 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=26.9
Q ss_pred HHHHHHHhccccCCccEEEEec--CC---hHHHHHHhcCCCEEE
Q 043597 40 KQVIDFLTKNFSNKIGLIRIYD--AN---IEILEALSGTNLVVT 78 (340)
Q Consensus 40 ~~v~~llk~~~~~~~~~VRiY~--~d---~~vl~A~~~~gi~v~ 78 (340)
+.+.+.++. +|++.|+++- .. ..+|.++...|++|.
T Consensus 67 ~~~~~~~~~---~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKE---HGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHH---cCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 334556666 8999999993 32 569999999999865
No 101
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=21.07 E-value=2.7e+02 Score=26.43 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=19.8
Q ss_pred eEEEEEeecccccCCcHhHHHHHHHHHHHHHHHcCCC
Q 043597 113 RFRYLCVGNEVIPGILATCVEPAIMNLHNSVRKAGYD 149 (340)
Q Consensus 113 ~I~~I~VGNEvl~~~~~~~ll~am~~v~~aL~~~gl~ 149 (340)
...-|+||+|+|.+.....=... +-+.|...|+.
T Consensus 3 ~a~iI~vG~ElL~G~ivdtNa~~---la~~L~~~G~~ 36 (255)
T COG1058 3 KAEIIAVGDELLSGRIVDTNAAF---LADELTELGVD 36 (255)
T ss_pred eEEEEEEccceecCceecchHHH---HHHHHHhcCce
Confidence 35569999999987422211122 23456677773
Done!