BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043601
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 291 bits (745), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 195/524 (37%), Positives = 292/524 (55%), Gaps = 54/524 (10%)
Query: 1 MEK--SGYGRDGIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFS 58
MEK + D I+RS P + +P +LS+ ++F+N + + +K LI+ +G T+S
Sbjct: 35 MEKQSNNNNSDVIFRSKLPDIYIPN--HLSLHDYIFQNISEFATKPCLINGPTGHVYTYS 92
Query: 59 QFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSEL 118
I +++ F LGV ++DVV++ PN +F + L G AT ANP +T +E+
Sbjct: 93 DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152
Query: 119 SKQVKDSSPKLVVTVPELWERVK----DFNIPAVLLGSNHIVS-PRGLRSSSNIVYFDEL 173
+KQ K S+ KL++T +++K D + V + N V P G + F EL
Sbjct: 153 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEG------CLRFTEL 206
Query: 174 IELSGNASNFPD-VSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQE---L 229
+ + AS D V + D AL YSSGTTG+ KG +LTHK + +S+ +D E L
Sbjct: 207 TQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLV-TSVAQQVDGENPNL 265
Query: 230 AGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVV 289
D V LCVLPMFH++ L+ ++ L+ G ++ M KF++ L I++ +VT +V
Sbjct: 266 YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMV 325
Query: 290 PPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCG 349
PPI+LA+AK+ S +K+DLSS++ + SGAAPL KEL + + P + QGYGMTE
Sbjct: 326 PPIVLAIAKS-SETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384
Query: 350 VVTVENPLLGVQ------NSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMP 403
V+ + LG SG+ GT+V E +IV DT L NQ GE+ +RG +M
Sbjct: 385 VLAMS---LGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK 441
Query: 404 GDLG-------YFDEHG--------------QLFIVDRIKELIKCNGFQV---ELEGVLV 439
G L D+ G +LFIVDR+KELIK GFQV ELE +L+
Sbjct: 442 GYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 501
Query: 440 SHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVA 483
HP+I D V+ + AGEVP+A+VV+S +S L+++DV++FV+
Sbjct: 502 GHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVS 545
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 287 bits (734), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 185/509 (36%), Positives = 285/509 (55%), Gaps = 52/509 (10%)
Query: 11 IYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHG 70
I+RS P + +P+ NL + ++ N +++ SK LI+ +G+ T++ + +V+ G
Sbjct: 8 IFRSKLPDIYIPK--NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASG 65
Query: 71 FRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLV 130
+G+ + DV+++F P+S +F + LG G I T ANP T +EL+K K S KL+
Sbjct: 66 LNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLL 125
Query: 131 VTVPELWERVKDF----NIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDV 186
+T +E+VKDF ++ + + S +P G ++F EL + N + P V
Sbjct: 126 ITQACYYEKVKDFARESDVKVMCVDS----APDG------CLHFSELTQADENEA--PQV 173
Query: 187 SVKQTDTAALLYSSGTTGVGKGAILTHKNFIAS--SLMTAMDQELAGALDYVTLCVLPMF 244
+ D AL YSSGTTG+ KG +LTHK I S + + L + V LCVLPMF
Sbjct: 174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMF 233
Query: 245 HVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVK 304
H++ L+ ++ L+ G ++ M KF++ + L IEKY+V+ VVPP+++++AK+ L
Sbjct: 234 HIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL-D 292
Query: 305 KFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTV-----ENPLLG 359
K DLSSL+ I SG APL KEL + P + QGYGMTE V+ + + P
Sbjct: 293 KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPF-- 350
Query: 360 VQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDLG-------YFDEH 412
G+ GT+V E +IV +T LP NQ GE+ +RG +M G L D+
Sbjct: 351 DIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKE 410
Query: 413 G--------------QLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDP 455
G +LFIVDR+KELIK GFQV ELE +L++HPEI DA V+ D
Sbjct: 411 GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDE 470
Query: 456 EAGEVPIAYVVRSPNSSLTKEDVQKFVAN 484
+AGEVP+A+VV+S S T+++++++++
Sbjct: 471 DAGEVPVAFVVKSEKSQATEDEIKQYISK 499
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 217 bits (553), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 154/485 (31%), Positives = 242/485 (49%), Gaps = 35/485 (7%)
Query: 30 VHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNS 89
+H + A A DA + ++T+S++ + +++ + G+ + + + NS
Sbjct: 60 LHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENS 119
Query: 90 IQFPICLLGVIAIG-GIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAV 148
+QF + + G + IG G+A T N +Y EL + S P +V +++
Sbjct: 120 LQFFMPVCGALFIGVGVAPT-NDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLP 178
Query: 149 LLGSNHIVSPRG--LRSSSNIVYFDELIELSGNASNF-PDVSVKQTDTAALLYSSGTTGV 205
++ I+ R + S + + + N ++ PD ++T TA ++ SSG+TG+
Sbjct: 179 IIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGL 238
Query: 206 GKGAILTHKNFIASSLMTAMDQELAGAL--DYVTLCVLPMFHVFGLSFVVYAQLQKGNCV 263
KG LTHKN I D + D L V+P H FG+ F L G +
Sbjct: 239 PKGVELTHKN-ICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGM-FTTLGYLTCGFRI 296
Query: 264 VSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRK 323
V M +F+ E LR+++ Y++ +VP + AK+ +LV K+DLS+L I SG APL K
Sbjct: 297 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLVDKYDLSNLHEIASGGAPLAK 355
Query: 324 ELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTL 383
E+ E +K + QGYG+TET + + P G+ G +V A+IV +DT
Sbjct: 356 EVGEAVAKRFKLPGIRQGYGLTETTSAIII-TPRGRDDKPGACGKVVPFFSAKIVDLDTG 414
Query: 384 KPLPPNQVGELWVRGPILMPG---------------------DLGYFDEHGQLFIVDRIK 422
K L NQ GEL V+GP++M G D+ Y+D+ G FIVDR+K
Sbjct: 415 KTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLK 474
Query: 423 ELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQ 479
LIK G+QV ELE +L+ HP I DA V PDP+AGE+P A VV ++T+++V
Sbjct: 475 SLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVM 534
Query: 480 KFVAN 484
+VA
Sbjct: 535 DYVAG 539
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 151/471 (32%), Positives = 236/471 (50%), Gaps = 38/471 (8%)
Query: 45 ALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGG 104
A DA ++T++++ + ++++ + G+ + +++ + NS+QF + +LG + IG
Sbjct: 46 AFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGV 105
Query: 105 IATTANPVYTVSELSKQVKDSSPKLVVTVPELWERV----KDFNIPAVLLGSNHIVSPRG 160
AN Y EL + S P +V + +++ K I ++ + +G
Sbjct: 106 AVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQG 165
Query: 161 LRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLY-SSGTTGVGKGAILTHKNFIAS 219
+S V + N +F S + T AL+ SSG+TG+ KG L H+ +A
Sbjct: 166 FQSMYTFV--TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRA-LAV 222
Query: 220 SLMTAMDQELAG--ALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRA 277
A D A D L V+P H FG+ F L G VV M +F+ E LR+
Sbjct: 223 RFSHARDPIFGNQIAPDTAILSVVPFHHGFGM-FTTLGYLISGFRVVLMYRFEEELFLRS 281
Query: 278 IEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVT 337
++ Y++ +VP + LAK+ +L+ K+DLS+L I SG APL KE+ E +K
Sbjct: 282 LQDYKIQSALLVPTLFSFLAKS-TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG 340
Query: 338 VFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVR 397
+ QGYG+TET + + G G+ G +V EA++V +DT K L NQ GEL VR
Sbjct: 341 IRQGYGLTETTSAILITPK--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVR 398
Query: 398 GPILM---------------------PGDLGYFDEHGQLFIVDRIKELIKCNGFQV---E 433
GP++M GD+ Y+DE FIVDR+K LIK G QV E
Sbjct: 399 GPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAE 458
Query: 434 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVAN 484
LE +L+ HP I DA V PD +AGE+P A VV ++T++++ +VA+
Sbjct: 459 LESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS 509
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 235/471 (49%), Gaps = 38/471 (8%)
Query: 45 ALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGG 104
A DA ++T++++ + ++++ + G+ + +++ + NS+QF + +LG + IG
Sbjct: 41 AFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGV 100
Query: 105 IATTANPVYTVSELSKQVKDSSPKLVVTVPELWERV----KDFNIPAVLLGSNHIVSPRG 160
AN +Y EL + S P +V + +++ K I ++ + +G
Sbjct: 101 AVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQG 160
Query: 161 LRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLY-SSGTTGVGKGAILTHKNFIAS 219
+S V + N +F S + T AL+ SSG+TG+ KG L H+
Sbjct: 161 FQSMYTFV--TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRT-ACV 217
Query: 220 SLMTAMDQELAGAL--DYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRA 277
A D + D L V+P H FG+ F L G VV M +F+ E LR+
Sbjct: 218 RFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRS 276
Query: 278 IEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVT 337
++ Y++ +VP + AK+ +L+ K+DLS+L I SG APL KE+ E +K
Sbjct: 277 LQDYKIQSALLVPTLFSFFAKS-TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG 335
Query: 338 VFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVR 397
+ QGYG+TET + + G G+ G +V EA++V +DT K L NQ GEL VR
Sbjct: 336 IRQGYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR 393
Query: 398 GPILM---------------------PGDLGYFDEHGQLFIVDRIKELIKCNGFQV---E 433
GP++M GD+ Y+DE FIVDR+K LIK G+QV E
Sbjct: 394 GPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 453
Query: 434 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVAN 484
LE +L+ HP I DA V PD +AGE+P A VV ++T++++ +VA+
Sbjct: 454 LESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS 504
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 235/471 (49%), Gaps = 38/471 (8%)
Query: 45 ALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGG 104
A DA ++T++++ + ++++ + G+ + +++ + NS+QF + +LG + IG
Sbjct: 41 AFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGV 100
Query: 105 IATTANPVYTVSELSKQVKDSSPKLVVTVPELWERV----KDFNIPAVLLGSNHIVSPRG 160
AN +Y EL + S P +V + +++ K I ++ + +G
Sbjct: 101 AVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQG 160
Query: 161 LRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLY-SSGTTGVGKGAILTHKNFIAS 219
+S V + N +F S + T AL+ SSG+TG+ KG L H+
Sbjct: 161 FQSMYTFV--TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRT-ACV 217
Query: 220 SLMTAMDQELAGAL--DYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRA 277
A D + D L V+P H FG+ F L G VV M +F+ E LR+
Sbjct: 218 RFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRS 276
Query: 278 IEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVT 337
++ Y++ +VP + AK+ +L+ K+DLS+L I SG APL KE+ E +K
Sbjct: 277 LQDYKIQSALLVPTLFSFFAKS-TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG 335
Query: 338 VFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVR 397
+ QGYG+TET + + G G+ G +V EA++V +DT K L NQ GEL VR
Sbjct: 336 IRQGYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR 393
Query: 398 GPILM---------------------PGDLGYFDEHGQLFIVDRIKELIKCNGFQV---E 433
GP++M GD+ Y+DE FIVDR+K LIK G+QV E
Sbjct: 394 GPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 453
Query: 434 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVAN 484
LE +L+ HP I DA V PD +AGE+P A VV ++T++++ +VA+
Sbjct: 454 LESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS 504
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 235/471 (49%), Gaps = 38/471 (8%)
Query: 45 ALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGG 104
A DA ++T++++ + ++++ + G+ + +++ + NS+QF + +LG + IG
Sbjct: 46 AFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGV 105
Query: 105 IATTANPVYTVSELSKQVKDSSPKLVVTVPELWERV----KDFNIPAVLLGSNHIVSPRG 160
AN +Y EL + S P +V + +++ K I ++ + +G
Sbjct: 106 AVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQG 165
Query: 161 LRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLY-SSGTTGVGKGAILTHKNFIAS 219
+S V + N +F S + T AL+ SSG+TG+ KG L H+
Sbjct: 166 FQSMYTFV--TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRT-ACV 222
Query: 220 SLMTAMDQELAGAL--DYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRA 277
A D + D L V+P H FG+ F L G VV M +F+ E LR+
Sbjct: 223 RFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRS 281
Query: 278 IEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVT 337
++ Y++ +VP + AK+ +L+ K+DLS+L I SG APL KE+ E +K
Sbjct: 282 LQDYKIQSALLVPTLFSFFAKS-TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG 340
Query: 338 VFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVR 397
+ QGYG+TET + + G G+ G +V EA++V +DT K L NQ GEL VR
Sbjct: 341 IRQGYGLTETTSAILITPE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR 398
Query: 398 GPILM---------------------PGDLGYFDEHGQLFIVDRIKELIKCNGFQV---E 433
GP++M GD+ Y+DE FIVDR+K LIK G+QV E
Sbjct: 399 GPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 458
Query: 434 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVAN 484
LE +L+ HP I DA V PD +AGE+P A VV ++T++++ +VA+
Sbjct: 459 LESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS 509
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 241/484 (49%), Gaps = 64/484 (13%)
Query: 45 ALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIG- 103
A +A +G +++++ + ++ G+ + + + N +F I ++ + IG
Sbjct: 43 AFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGV 102
Query: 104 GIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRS 163
G+A T N +YT+ EL + S P +V + + ++V I + + +
Sbjct: 103 GVAPT-NEIYTLRELVHSLGISKPTIVFSSKKGLDKV--------------ITVQKTVTT 147
Query: 164 SSNIVYFDELIELSG----------------NASNFPDVSVKQTDTAALLY-SSGTTGVG 206
IV D ++ G AS+F V V + + AL+ SSG+TG+
Sbjct: 148 IKTIVILDSKVDYRGYQCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLP 207
Query: 207 KGAILTHKNFIASSLMTAMDQELAGALDYVT--LCVLPMFHVFGLSFVVYAQLQKGNCVV 264
KG LTH+N I + A D + T L V+P H FG+ F L G VV
Sbjct: 208 KGVQLTHEN-IVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGFRVV 265
Query: 265 SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKE 324
+ KFD ET L+ ++ Y+ T+ +VP + L K+ L+ K+DLS+L I SG APL KE
Sbjct: 266 MLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKS-ELLNKYDLSNLVEIASGGAPLSKE 324
Query: 325 LVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLK 384
+ E ++ V QGYG+TET + + G G++G +V +A+++ +DT K
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKK 382
Query: 385 PLPPNQVGELWVRGPILMP---------------------GDLGYFDEHGQLFIVDRIKE 423
L PN+ GE+ V+GP+LM GD+GY+DE FIVDR+K
Sbjct: 383 SLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKS 442
Query: 424 LIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQK 480
LIK G+QV ELE VL+ HP I DA V PDP AGE+P A VV ++T+++V
Sbjct: 443 LIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMD 502
Query: 481 FVAN 484
+VA+
Sbjct: 503 YVAS 506
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 240/484 (49%), Gaps = 64/484 (13%)
Query: 45 ALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIG- 103
A +A +G +++++ + ++ G+ + + + N +F I ++ + IG
Sbjct: 43 AFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGV 102
Query: 104 GIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRS 163
G+A T N +YT+ EL + S P +V + + ++V I + + +
Sbjct: 103 GVAPT-NEIYTLRELVHSLGISKPTIVFSSKKGLDKV--------------ITVQKTVTT 147
Query: 164 SSNIVYFDELIELSG----------------NASNFPDVSVKQTDTAALLY-SSGTTGVG 206
IV D ++ G AS+F V V + + AL+ SSG+TG+
Sbjct: 148 IKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLP 207
Query: 207 KGAILTHKNFIASSLMTAMDQELAGALDYVT--LCVLPMFHVFGLSFVVYAQLQKGNCVV 264
KG LTH+N I + A D + T L V+P H FG+ F L G VV
Sbjct: 208 KGVQLTHEN-IVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGFRVV 265
Query: 265 SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKE 324
+ KFD ET L+ ++ Y+ T +VP + L K+ L+ K+DLS+L I SG APL KE
Sbjct: 266 MLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS-ELLNKYDLSNLVEIASGGAPLSKE 324
Query: 325 LVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLK 384
+ E ++ V QGYG+TET + + G G++G +V +A+++ +DT K
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKK 382
Query: 385 PLPPNQVGELWVRGPILMP---------------------GDLGYFDEHGQLFIVDRIKE 423
L PN+ GE+ V+GP+LM GD+GY+DE FIVDR+K
Sbjct: 383 SLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKS 442
Query: 424 LIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQK 480
LIK G+QV ELE VL+ HP I DA V PDP AGE+P A VV ++T+++V
Sbjct: 443 LIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMD 502
Query: 481 FVAN 484
+VA+
Sbjct: 503 YVAS 506
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 240/484 (49%), Gaps = 64/484 (13%)
Query: 45 ALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIG- 103
A +A +G +++++ + ++ G+ + + + N +F I ++ + IG
Sbjct: 43 AFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGV 102
Query: 104 GIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRS 163
G+A T N +YT+ EL + S P +V + + ++V I + + +
Sbjct: 103 GVAPT-NEIYTLRELVHSLGISKPTIVFSSKKGLDKV--------------ITVQKTVTT 147
Query: 164 SSNIVYFDELIELSG----------------NASNFPDVSVKQTDTAALLY-SSGTTGVG 206
IV D ++ G AS+F V V + + AL+ SSG+TG+
Sbjct: 148 IKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLP 207
Query: 207 KGAILTHKNFIASSLMTAMDQELAGALDYVT--LCVLPMFHVFGLSFVVYAQLQKGNCVV 264
KG LTH+N I + A D + T L V+P H FG+ F L G VV
Sbjct: 208 KGVQLTHEN-IVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM-FTTLGYLICGFRVV 265
Query: 265 SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKE 324
+ KFD ET L+ ++ Y+ T +VP + L K+ L+ K+DLS+L I SG APL KE
Sbjct: 266 MLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS-ELLNKYDLSNLVEIASGGAPLSKE 324
Query: 325 LVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLK 384
+ E ++ V QGYG+TET + + G G++G +V +A+++ +DT K
Sbjct: 325 VGEAVARRFNLPGVRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKK 382
Query: 385 PLPPNQVGELWVRGPILMP---------------------GDLGYFDEHGQLFIVDRIKE 423
L PN+ GE+ V+GP+LM GD+GY+DE FIVDR+K
Sbjct: 383 SLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKS 442
Query: 424 LIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQK 480
LIK G+QV ELE VL+ HP I DA V PDP AGE+P A VV ++T+++V
Sbjct: 443 LIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMD 502
Query: 481 FVAN 484
+VA+
Sbjct: 503 YVAS 506
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 151/506 (29%), Positives = 225/506 (44%), Gaps = 66/506 (13%)
Query: 25 PNLSMVHFLFRNSASYGSKSALIDADSG------ESLTFSQFKSIVIKVSHGFRHLGVTK 78
P +S+ + + +G K+A+I A+ ES F + + K++ G GV K
Sbjct: 17 PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRK 76
Query: 79 HDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWE 138
+ V + PNSI + + + + NP Y EL + DS +V L+E
Sbjct: 77 GEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE 136
Query: 139 RVKDFNIPAVL--LGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVK-QTDTAA 195
N VL G + G +S + V + +F +V V + D A
Sbjct: 137 -----NFKPVLEKTGVERVFVVGGEVNSLSEV-------XDSGSEDFENVKVNPEEDVAL 184
Query: 196 LLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHV--FGLSFVV 253
+ Y+ GTTG KG LTH N A++L A+ L+ D + C P FH FGL V
Sbjct: 185 IPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHX-DTIVGCX-PXFHSAEFGL---V 239
Query: 254 YAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNV-SLVKKFDLSSLK 312
+ GN V F+ E IEKY+ T W VPP + L + S K +D S LK
Sbjct: 240 NLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLK 299
Query: 313 GIGSGAAPLRKELVEECSK------NLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGST 366
+GA P+ LVE+ K N P + Q +G TE C VT NP L + S +
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTT-NPPLRLDKSTTQ 358
Query: 367 GTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP-------------------------IL 401
G + +E +++ ++ + L + GE+ +RGP
Sbjct: 359 GVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418
Query: 402 MPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAG 458
GD+G+ DE G L DR+KE+IK G+ + ELE +L H + D VI PD EAG
Sbjct: 419 RTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAG 478
Query: 459 EVPIAYVVRSP--NSSLTKEDVQKFV 482
EVP A++V P + +ED+ ++V
Sbjct: 479 EVPKAFIVLKPEYRGKVDEEDIIEWV 504
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 124/484 (25%), Positives = 219/484 (45%), Gaps = 54/484 (11%)
Query: 26 NLSMVHFLFRNSASYGSK-SALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLI 84
+ + ++ R A+ + A ++ + +T++Q ++ + + LG+ K D V +
Sbjct: 14 KMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVAL 73
Query: 85 FAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFN 144
PNS++F G +G +A N E+S + DS K+V+ +
Sbjct: 74 LMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI-----------YG 122
Query: 145 IPA--VLLGSNHIVSPRGLRSSSNIVYFDELIE-LSGNASNFPDVSVKQTDTAALLYSSG 201
P+ V+ P G + ++ + D L E L A++ P V D ++Y+SG
Sbjct: 123 APSAPVIDAIRAQADPPG--TVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSG 180
Query: 202 TTGVGKGAILTHKNF--IASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQK 259
TTG KG + TH++ ASS + +D L L LPMFHV L+ V+++ + +
Sbjct: 181 TTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL----LLPLPMFHVAALTTVIFSAM-R 235
Query: 260 GNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAA 319
G ++SM +FD I + RV VP IL + V + D + +G A
Sbjct: 236 GVTLISMPQFDATKVWSLIVEERVCIGGAVPA-ILNFMRQVPEFAELDAPDFRYFITGGA 294
Query: 320 PLRKELVE-ECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIV 378
P+ + L++ +KN + V QGY +TE+CG T+ ++ +GS G + +
Sbjct: 295 PMPEALIKIYAAKN---IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR 351
Query: 379 CVDTLKPLPPNQVGELWVRGPILMP--------------------GDLGYFDEHGQLFIV 418
D + + + GE+ ++ IL+ GD+G D+ G L+I
Sbjct: 352 GDDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIK 409
Query: 419 DRIKELIKCNG---FQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 475
DR+K++I G + E+E V++ P + + VI PD + GE+ A VV N +
Sbjct: 410 DRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQ 469
Query: 476 EDVQ 479
+ V+
Sbjct: 470 QIVE 473
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 134/490 (27%), Positives = 214/490 (43%), Gaps = 60/490 (12%)
Query: 26 NLSMVHFLFRNSASYGSKSA-LIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLI 84
+ ++ RN+A + ++A ++D G LT + + +++ G GV D V I
Sbjct: 5 DFTLADVYRRNAALFPDRTAFMVD---GVRLTHRDYLARAERLASGLLRDGVHTGDRVAI 61
Query: 85 FAPNSIQFPICLLGVIA-IGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF 143
+ N + I L+G +A IG I N E++ + D +P +VV + + V
Sbjct: 62 LSQNCSEM-IELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV 120
Query: 144 NIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTT 203
+P+ LG G S + D + +A F D +++++
Sbjct: 121 -LPS--LGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEF-----GAADGFVIIHTAAVG 172
Query: 204 GVGKGAILTHKNFI--ASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGN 261
G +GA+++ N + SSL+ A A V L +LP+FHV GL ++ Q Q G
Sbjct: 173 GRPRGALISQGNLLIAQSSLVDAWRLTEAD----VNLGMLPLFHVTGLGLMLTLQ-QAGG 227
Query: 262 CVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPL 321
V KFD A R IE ++VT P++ + + + L ++ G+ +
Sbjct: 228 ASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDT----- 282
Query: 322 RKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGST--GTLVAGVEAQIVC 379
E +E P T + +G +ET G+ T +++G VA V+A+
Sbjct: 283 -PETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAGRPLFWRTVAVVDAED-- 339
Query: 380 VDTLKPLPPNQVGELWVRGPILMPG--------------------DLGYFDEHGQLFIVD 419
+PLPP +VGE+ +RGP + G D+G FD G LF
Sbjct: 340 ----RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAG 395
Query: 420 RI--KELIKCNG---FQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT 474
R KELIK G + E+EG L HP I DAVVI PDP+ E A V P S+
Sbjct: 396 RAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIA 455
Query: 475 KEDVQKFVAN 484
+ + +FVA+
Sbjct: 456 ADALAEFVAS 465
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 202/466 (43%), Gaps = 44/466 (9%)
Query: 47 IDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106
I+ +G+ +++++ + +V++ G+ D V S++ + L + GG+
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 107 TTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSN 166
N YT+ EL + D+ PK+VV P + + I A + + + P G S ++
Sbjct: 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIA--AIAAKVGATVETLGPDGRGSLTD 138
Query: 167 IVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMD 226
+ + D AA+LY+SGTTG KGA L+H N +AS+ +T +D
Sbjct: 139 AAAGASEAFAT--------IDRGADDLAAILYTSGTTGRSKGAXLSHDN-LASNSLTLVD 189
Query: 227 QELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHW 286
D V + LP++H GL L + + KFD + L R T
Sbjct: 190 Y-WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVL 246
Query: 287 WVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTE 346
VP L ++ L K+ + SG+APL + E S V + YG TE
Sbjct: 247 XGVPTFYTRLLQSPRLTKE-TTGHXRLFISGSAPLLADTHREWSAKTGHA-VLERYGXTE 304
Query: 347 TCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP------- 399
T NP G + G+ G + GV A++ +T K LP +G + V+GP
Sbjct: 305 TN--XNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYW 362
Query: 400 --------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHP 442
+ GDLG DE G + I+ R K+L+ GF V E+E + + P
Sbjct: 363 RXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXP 422
Query: 443 EILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQL 488
++++ VI P + GE A VVR +++ ++ Q D QL
Sbjct: 423 GVVESAVIGVPHADFGEGVTAVVVRDKGATI--DEAQVLHGLDGQL 466
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 130/482 (26%), Positives = 209/482 (43%), Gaps = 53/482 (10%)
Query: 24 DPNLSMVHFLFRNSASYGSKSALIDADSGE--SLTFSQFKSIVIKVSHGFRHLGVTKHDV 81
D L++ FL R +A +G K + +GE T+++ ++ G R LGV D
Sbjct: 15 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDR 74
Query: 82 VLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVK 141
V N + V +G + TANP + E++ + + K+++ P L V+
Sbjct: 75 VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134
Query: 142 DFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSG 201
I L H V + Y + L E + V V + + Y++G
Sbjct: 135 --AIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD------PVRVPERAACGMAYTTG 186
Query: 202 TTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGN 261
TTG+ KG + +H+ + SL ++ A + V L V+PMFHV A L
Sbjct: 187 TTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAK 246
Query: 262 CVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKG--IGSGAA 319
V+ + D + + + VT VP + LALA + L +L+ +G AA
Sbjct: 247 QVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST-GHRLKTLRRLVVGGSAA 305
Query: 320 PLRKELVEECSKNLPTVTVFQGYGMTETCGVVT---VENPLLGVQNS------GSTGTLV 370
P + L+ + V V QGYG+TET VV V++ L + TG +
Sbjct: 306 P--RSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 361
Query: 371 AGVEAQIVCVDTLKPLPPN--QVGELWVRGP---------------ILMP------GDLG 407
V + V + +P+P + +GE+ ++GP L P GD+
Sbjct: 362 PLVRLR-VADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIA 420
Query: 408 YFDEHGQLFIVDRIKELIKCNG---FQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAY 464
+DE G + I DR+K+LIK G V+LE L+ HP++ +A V+ P P+ E P+A
Sbjct: 421 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 480
Query: 465 VV 466
VV
Sbjct: 481 VV 482
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 129/480 (26%), Positives = 216/480 (45%), Gaps = 63/480 (13%)
Query: 27 LSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFA 86
+S+ +L++ + G A+ D ES T+ +++ + S + L + V ++
Sbjct: 1 MSLDFWLYKQAQQNGHHIAITDGQ--ESYTY---QNLYCEASLLAKRLKAYQQSRVGLYI 55
Query: 87 PNSIQFPI----CLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKD 142
NSIQ I C L I I I T P +E++ Q++ +L+ L ++
Sbjct: 56 DNSIQSIILIHACWLANIEIAMINTRLTP----NEMTNQMRSIDVQLIFCTLPL--ELRG 109
Query: 143 FNIPAV--LLGSNHIVSPRGLRSSSNIVYFD---ELIELSGNASNFPDVSVKQTDTAALL 197
F I ++ + + ++ GL ++ + +D E + + SN + S D A+++
Sbjct: 110 FQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIM 169
Query: 198 YSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQL 257
++SGTTG K T +N AS++ + L D L VLP++H+ GLS ++ A +
Sbjct: 170 FTSGTTGPQKAVPQTFRNHYASAI--GCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVI 227
Query: 258 QKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSG 317
+ G V + KF+ E L I+ R+TH +VP + L + L + ++ L+ I G
Sbjct: 228 E-GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQ-GLHEPYN---LQKILLG 282
Query: 318 AAPLRKELVEECSK-NLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQ 376
A L ++E + NLP ++ +GMTETC P + + G A V+ +
Sbjct: 283 GAKLSATMIETALQYNLP---IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339
Query: 377 IVCVDTLKPLPPNQV--GELWVRGPILMPGDL-----------GYF--------DEHGQL 415
I PN+ GEL ++G +M G L GYF D G +
Sbjct: 340 IK--------NPNKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYV 391
Query: 416 FIVDRIKELIKCNG---FQVELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS 472
I DR K+LI G + ++E V P I DAV + PD G+VP Y V + S
Sbjct: 392 MIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDIS 451
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 120/466 (25%), Positives = 200/466 (42%), Gaps = 44/466 (9%)
Query: 47 IDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106
I+ +G+ +++++ + +V++ G+ D V S++ + L + GG+
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 TTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSN 166
N YT+ EL + D+ P +VV P R I A + + + P G S ++
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPS--XRDGIAAIAAXVGATVETLGPDGRGSLTD 138
Query: 167 IVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMD 226
+ + D AA+LY+SGTTG GA+L+H N +AS+ +T +D
Sbjct: 139 AAAGASEAFAT--------IDRGADDLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVD 189
Query: 227 QELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHW 286
D V + LP++H GL L ++ + FD + L + R T
Sbjct: 190 Y-WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVL 246
Query: 287 WVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTE 346
VP L ++ L + ++ SG+APL + E S V + YGMTE
Sbjct: 247 MGVPTFYTRLLQSPRLTXE-TTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTE 304
Query: 347 TCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP------- 399
T + NP G + G+ G + GV A++ +T LP +G + V GP
Sbjct: 305 TN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYW 362
Query: 400 --------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHP 442
+ GDLG DE G + I+ R +L+ GF V E+E + + P
Sbjct: 363 RMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMP 422
Query: 443 EILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQL 488
++++ VI P + GE A VVR +++ ++ Q D QL
Sbjct: 423 GVVESAVIGVPHADFGEGVTAVVVRDXGATI--DEAQVLHGLDGQL 466
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 199/465 (42%), Gaps = 45/465 (9%)
Query: 47 IDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106
I+ +G+ +++++ + +V++ G+ D V S++ + L + GG+
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 TTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSN 166
N YT+ EL + D+ P +VV P R I A + + + P G S ++
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSX--RDGIAAIAAXVGATVETLGPDGRGSLTD 138
Query: 167 IVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMD 226
+ + D AA+LY+SGTTG GA+L+H N +AS+ +T +D
Sbjct: 139 AAAGASEAFAT--------IDRGADDLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVD 189
Query: 227 QELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHW 286
D V + LP++H GL L ++ + FD + L + R T
Sbjct: 190 Y-WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVL 246
Query: 287 WVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTE 346
VP L ++ L + ++ SG+APL + E S V + YGMTE
Sbjct: 247 MGVPTFYTRLLQSPRLTXE-TTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTE 304
Query: 347 TCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP------- 399
T + NP G + G+ G + GV A++ +T LP +G + V GP
Sbjct: 305 TN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYW 362
Query: 400 --------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHP 442
+ GDLG DE G + I+ R +L+ GF V E+E + + P
Sbjct: 363 RMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMP 422
Query: 443 EILDAVVIPFPDPEAGEVPIAYVVRSPN---SSLTKEDVQKFVAN 484
++++ VI P + GE A+VV S + E++ FV +
Sbjct: 423 GVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXD 467
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/420 (25%), Positives = 186/420 (44%), Gaps = 51/420 (12%)
Query: 27 LSMVHFLFRNSASYGSK-SALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIF 85
+ + ++ R A+ + A ++ + +T++Q ++ + + LG+ K D V +
Sbjct: 1 MKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALL 60
Query: 86 APNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNI 145
PNS++F G +G +A N E+S + DS K+V+ +
Sbjct: 61 MPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI-----------YGA 109
Query: 146 PA--VLLGSNHIVSPRGLRSSSNIVYFDELIE-LSGNASNFPDVSVKQTDTAALLYSSGT 202
P+ V+ P G + ++ + D L E L A++ P V D ++Y+SGT
Sbjct: 110 PSAPVIDAIRAQADPPG--TVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGT 167
Query: 203 TGVGKGAILTHKNF--IASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKG 260
TG KG + TH++ ASS + +D L L LPMFHV L+ V+++ + +G
Sbjct: 168 TGHPKGVVHTHESVHSAASSWASTIDVRYRDRL----LLPLPMFHVAALTTVIFSAM-RG 222
Query: 261 NCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAP 320
++SM +FD I + RV VP IL + V + D + +G AP
Sbjct: 223 VTLISMPQFDATKVWSLIVEERVCIGGAVPA-ILNFMRQVPEFAELDAPDFRYFITGGAP 281
Query: 321 LRKELVE-ECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVC 379
+ + L++ +KN + V QGY +TE+CG T+ ++ +GS G + +
Sbjct: 282 MPEALIKIYAAKN---IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG 338
Query: 380 VDTLKPLPPNQVGELWVRGPILMP--------------------GDLGYFDEHGQLFIVD 419
D + + + GE+ ++ IL+ GD+G D+ G L+I D
Sbjct: 339 DDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 191/444 (43%), Gaps = 42/444 (9%)
Query: 47 IDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106
I+ +G+ +++++ + +V++ G+ D V S++ + L + GG+
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 TTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSN 166
N YT+ EL + D+ P +VV P R I A + + + P G S ++
Sbjct: 81 LPLNTAYTLHELDYFITDAEPXIVVCDPSX--RDGIAAIAAXVGATVETLGPDGRGSLTD 138
Query: 167 IVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMD 226
+ + D AA+LY+SGTTG GA+L+H N +AS+ +T +D
Sbjct: 139 AAAGASEAFAT--------IDRGADDLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVD 189
Query: 227 QELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHW 286
D V + LP++H GL L ++ + FD + L + R T
Sbjct: 190 Y-WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVL 246
Query: 287 WVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTE 346
VP L ++ L + ++ SG+APL + E S V + YGMTE
Sbjct: 247 MGVPTFYTRLLQSPRLTXE-TTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTE 304
Query: 347 TCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP------- 399
T + NP G + G+ G + GV A++ +T LP +G + V GP
Sbjct: 305 TN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYW 362
Query: 400 --------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHP 442
+ GDLG DE G + I+ R +L+ GF V E+E + + P
Sbjct: 363 RMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMP 422
Query: 443 EILDAVVIPFPDPEAGEVPIAYVV 466
++++ VI P + GE A+VV
Sbjct: 423 GVVESAVIGVPHADFGEGVTAFVV 446
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 168/393 (42%), Gaps = 74/393 (18%)
Query: 110 NPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVY 169
NP EL+ + DS+P LV+ P D +P L +
Sbjct: 99 NPKSGDKELAHILSDSAPSLVLAPP-------DAELPPAL---------------GALER 136
Query: 170 FDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQEL 229
D + G P+ D A ++Y+SGTTG KGA++ + +L T +D L
Sbjct: 137 VDVDVRARGA---VPEDGADDGDPALVVYTSGTTGPPKGAVIPRR-----ALATTLDA-L 187
Query: 230 AGALDY----VTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTH 285
A A + V + LP+FHV GL + L++G V + +F E A R + T
Sbjct: 188 ADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATM 246
Query: 286 WWVVPPIILALAKNV----SLVKKFDLSSLKGIGSGAAPLRK-ELVEECSKNLPTVTVFQ 340
+ VP + +A+ + L K + L GS A P+ E + + V +
Sbjct: 247 LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR----RVIE 302
Query: 341 GYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVD--TLKPLPPNQVGELWVRG 398
YGMTET +V G +G+ G + GVE ++V D + L VGE+ VRG
Sbjct: 303 RYGMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG 360
Query: 399 PILMP---------------------GDLGYFDEHGQLFIVDR-IKELIKCNGFQV---E 433
P L GD+ D G + IV R +LIK G+++ E
Sbjct: 361 PNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE 420
Query: 434 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV 466
+E L+ HPE+ +A V PDP+ GE +A++V
Sbjct: 421 IENALLEHPEVREAAVTGEPDPDLGERIVAWIV 453
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 121/513 (23%), Positives = 214/513 (41%), Gaps = 65/513 (12%)
Query: 19 LVLPQDPNLS--MVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGV 76
+++P++ N + +V R+S + D + + TF K K ++ F G+
Sbjct: 49 ILVPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGI 108
Query: 77 TKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPEL 136
K D V++ + F C+LG+ +G IA A + ++ +++ + K++V + E
Sbjct: 109 GKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAED 168
Query: 137 WERVKDFNIPAVLLGSNHIVSPRGLRSS-------SNIVYFDELIELSGNASNFP--DVS 187
++P + ++ L+ + + F + +E S P +VS
Sbjct: 169 -------DVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVS 221
Query: 188 VKQTDTAALLYSSGTTGVGKGAILTHKN-FIASSLMTAMDQELA--GALDYVTLCVLPMF 244
K D + +SSGT G K ++ H N + ++TA + L Y
Sbjct: 222 TKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK 279
Query: 245 HVFGLSFVVYAQLQKGNCVV--SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSL 302
V+G +Y Q G V +F+ + L KY VT + P I L K
Sbjct: 280 CVWGK---LYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-- 334
Query: 303 VKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETC-------------G 349
+ ++ S+LK PL E+ + + + +G+G TET G
Sbjct: 335 LSHYNFSTLKYAVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTETVVTIATFPWMEPKPG 393
Query: 350 VVTVENPLLGVQNSGSTGTLVA-GVEAQIVCVDTLKPLP----------PNQVGELWVRG 398
+ P ++ G L G E +IV ++T++ P P + E W G
Sbjct: 394 SIGKPTPGYKIELMDRDGRLCEVGEEGEIV-INTMEGKPVGLFVHYGKDPERTEETWHDG 452
Query: 399 PILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDP 455
GD+ + DE G L+ V R ++IK +G++V E+E L+ HP +L+ + PDP
Sbjct: 453 -YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDP 511
Query: 456 EAGEVPIAYVV----RSPNSSLTKEDVQKFVAN 484
G+V A +V +P+ SL K ++Q V N
Sbjct: 512 VRGQVIKATIVLTKDYTPSDSL-KNELQDHVKN 543
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 204/498 (40%), Gaps = 79/498 (15%)
Query: 33 LFRNSASYGSKSALI----DADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPN 88
L R+ G ++A+I D + +++ + V + ++ LG+ K DVV I+ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 89 SIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPE---------LWER 139
+ + +L IG + + ++ ++ ++ DSS +LV+T E L +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 140 VKDFNIPAVLLGSNHIVSPRGLRSSSNI-------VYFDELIELSGNASNFPDVSVKQTD 192
V D + H++ + R+ S+I +++ +LIE + + P+ ++ D
Sbjct: 202 VDDALKNPNVTSVEHVIVLK--RTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAED 257
Query: 193 TAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDY----VTLCVLPMFHVFG 248
+LY+SG+TG KG + T ++ + T DY + C + V G
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATT-----FKYVFDYHPGDIYWCTADVGWVTG 312
Query: 249 LSFVVYAQLQKGNCVVSMRKF-DLETALR---AIEKYRVTHWWVVPPIILAL-AKNVSLV 303
S+++Y L G + + T R ++K++V + P I AL A+ +
Sbjct: 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI 372
Query: 304 KKFDLSSLKGIGSGAAPLRKELVEECSKNL--PTVTVFQGYGMTETCGVV---------- 351
+ D SSL+ +GS P+ E E K + V + TET G +
Sbjct: 373 EGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL 432
Query: 352 ---TVENPLLGVQ-----NSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELW-------- 395
+ P GVQ N G E +V D+ P Q L+
Sbjct: 433 KAGSATRPFFGVQPALVDNEGHPQE--GATEGNLVITDSW----PGQARTLFGDHERFEQ 486
Query: 396 ----VRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAV 448
+ GD DE G +I R+ +++ +G ++ E+E LV+HP+I +A
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 449 VIPFPDPEAGEVPIAYVV 466
V+ P G+ AYV
Sbjct: 547 VVGIPHAIKGQAIYAYVT 564
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 120/521 (23%), Positives = 214/521 (41%), Gaps = 84/521 (16%)
Query: 33 LFRNSASYGSKSALI----DADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPN 88
L R+ G ++A+I D + +++ + V + ++ LG+ K DVV I+ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 89 SIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPE---------LWER 139
+ + +L IG + + ++ ++ ++ DSS +LV+T E L +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 140 VKDFNIPAVLLGSNHIVSPRGLRSSSNI-------VYFDELIELSGNASNFPDVSVKQTD 192
V D + H++ + R+ S+I +++ +LIE + + P+ ++ D
Sbjct: 202 VDDALKNPNVTSVEHVIVLK--RTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAED 257
Query: 193 TAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDY----VTLCVLPMFHVFG 248
+LY+SG+TG KG + T ++ + T DY + C + V G
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATT-----FKYVFDYHPGDIYWCTADVGWVTG 312
Query: 249 LSFVVYAQLQKGNCVVSMRKF-DLETALR---AIEKYRVTHWWVVPPIILAL-AKNVSLV 303
S+++Y L G + + T R ++K++V + P I AL A+ +
Sbjct: 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI 372
Query: 304 KKFDLSSLKGIGSGAAPLRKELVEECSKNL--PTVTVFQGYGMTETCGVV---------- 351
+ D SSL+ +GS P+ E E K + V + TET G +
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL 432
Query: 352 ---TVENPLLGVQ-----NSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELW-------- 395
+ P GVQ N G E +V D+ P Q L+
Sbjct: 433 KAGSATRPFFGVQPALVDNEGHPQE--GATEGNLVITDSW----PGQARTLFGDHERFEQ 486
Query: 396 ----VRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAV 448
+ GD DE G +I R+ +++ +G ++ E+E LV+HP+I +A
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 449 VIPFPDPEAGEVPIAYVV----RSPNSSLTKEDVQKFVAND 485
V+ P G+ AYV P+ L E V+ +VA +
Sbjct: 547 VVGIPHAIKGQAIYAYVTLNHGEEPSPELYAE-VRNWVAKE 586
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 204/498 (40%), Gaps = 79/498 (15%)
Query: 33 LFRNSASYGSKSALI----DADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPN 88
L R+ G ++A+I D + +++ + V + ++ LG+ K DVV I+ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 89 SIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPE---------LWER 139
+ + +L IG + + ++ ++ ++ DSS +LV+T E L +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 140 VKDFNIPAVLLGSNHIVSPRGLRSSSNI-------VYFDELIELSGNASNFPDVSVKQTD 192
V D + H++ + R+ S+I +++ +LIE + + P+ ++ D
Sbjct: 202 VDDALKNPNVTSVEHVIVLK--RTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAED 257
Query: 193 TAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDY----VTLCVLPMFHVFG 248
+LY+SG+TG KG + T ++ + T DY + C + V G
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATT-----FKYVFDYHPGDIYWCTADVGWVTG 312
Query: 249 LSFVVYAQLQKGNCVVSMRKF-DLETALR---AIEKYRVTHWWVVPPIILAL-AKNVSLV 303
S+++Y L G + + T R ++K++V + P I AL A+ +
Sbjct: 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI 372
Query: 304 KKFDLSSLKGIGSGAAPLRKELVEECSKNL--PTVTVFQGYGMTETCGVV---------- 351
+ D SSL+ +GS P+ E E K + V + TET G +
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL 432
Query: 352 ---TVENPLLGVQ-----NSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELW-------- 395
+ P GVQ N G E +V D+ P Q L+
Sbjct: 433 KAGSATRPFFGVQPALVDNEGHPQE--GATEGNLVITDSW----PGQARTLFGDHERFEQ 486
Query: 396 ----VRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAV 448
+ GD DE G +I R+ +++ +G ++ E+E LV+HP+I +A
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 449 VIPFPDPEAGEVPIAYVV 466
V+ P G+ AYV
Sbjct: 547 VVGIPHAIKGQAIYAYVT 564
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 204/498 (40%), Gaps = 79/498 (15%)
Query: 33 LFRNSASYGSKSALI----DADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPN 88
L R+ G ++A+I D + +++ + V + ++ LG+ K DVV I+ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 89 SIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPE---------LWER 139
+ + +L IG + + ++ ++ ++ DSS +LV+T E L +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 140 VKDFNIPAVLLGSNHIVSPRGLRSSSNI-------VYFDELIELSGNASNFPDVSVKQTD 192
V D + H++ + R+ S+I +++ +LIE + + P+ ++ D
Sbjct: 202 VDDALKNPNVTSVEHVIVLK--RTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAED 257
Query: 193 TAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDY----VTLCVLPMFHVFG 248
+LY+SG+TG KG + T ++ + T DY + C + V G
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATT-----FKYVFDYHPGDIYWCTADVGWVTG 312
Query: 249 LSFVVYAQLQKGNCVVSMRKF-DLETALR---AIEKYRVTHWWVVPPIILAL-AKNVSLV 303
S+++Y L G + + T R ++K++V + P I AL A+ +
Sbjct: 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI 372
Query: 304 KKFDLSSLKGIGSGAAPLRKELVEECSKNL--PTVTVFQGYGMTETCGVV---------- 351
+ D SSL+ +GS P+ E E K + V + TET G +
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL 432
Query: 352 ---TVENPLLGVQ-----NSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELW-------- 395
+ P GVQ N G E +V D+ P Q L+
Sbjct: 433 KAGSATRPFFGVQPALVDNEGHPQE--GATEGNLVITDSW----PGQARTLFGDHERFEQ 486
Query: 396 ----VRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAV 448
+ GD DE G +I R+ +++ +G ++ E+E LV+HP+I +A
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 449 VIPFPDPEAGEVPIAYVV 466
V+ P G+ AYV
Sbjct: 547 VVGIPHAIKGQAIYAYVT 564
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 204/498 (40%), Gaps = 79/498 (15%)
Query: 33 LFRNSASYGSKSALI----DADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPN 88
L R+ G ++A+I D + +++ + V + ++ LG+ K DVV I+ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 89 SIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPE---------LWER 139
+ + +L IG + + ++ ++ ++ DSS +LV+T E L +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKN 201
Query: 140 VKDFNIPAVLLGSNHIVSPRGLRSSSNI-------VYFDELIELSGNASNFPDVSVKQTD 192
V D + H++ + R+ S+I +++ +LIE + + P+ ++ D
Sbjct: 202 VDDALKNPNVTSVEHVIVLK--RTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAED 257
Query: 193 TAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDY----VTLCVLPMFHVFG 248
+LY+SG+TG KG + T ++ + T DY + C + V G
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATT-----FKYVFDYHPGDIYWCTADVGWVTG 312
Query: 249 LSFVVYAQLQKGNCVVSMRKF-DLETALR---AIEKYRVTHWWVVPPIILAL-AKNVSLV 303
S+++Y L G + + T R ++K++V + P I AL A+ +
Sbjct: 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI 372
Query: 304 KKFDLSSLKGIGSGAAPLRKELVEECSKNL--PTVTVFQGYGMTETCGVV---------- 351
+ D SSL+ +GS P+ E E K + V + TET G +
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL 432
Query: 352 ---TVENPLLGVQ-----NSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELW-------- 395
+ P GVQ N G E +V D+ P Q L+
Sbjct: 433 KAGSATRPFFGVQPALVDNEGHPQE--GATEGNLVITDSW----PGQARTLFGDHERFEQ 486
Query: 396 ----VRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAV 448
+ GD DE G +I R+ +++ +G ++ E+E LV+HP+I +A
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 449 VIPFPDPEAGEVPIAYVV 466
V+ P G+ AYV
Sbjct: 547 VVGIPHAIKGQAIYAYVT 564
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 204/498 (40%), Gaps = 79/498 (15%)
Query: 33 LFRNSASYGSKSALI----DADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPN 88
L R+ G ++A+I D + +++ + V + ++ LG+ K DVV I+ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 89 SIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPE---------LWER 139
+ + +L IG + + ++ ++ ++ DSS +LV+T E L +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 140 VKDFNIPAVLLGSNHIVSPRGLRSSSNI-------VYFDELIELSGNASNFPDVSVKQTD 192
V D + H++ + R+ S+I +++ +LIE + + P+ ++ D
Sbjct: 202 VDDALKNPNVTSVEHVIVLK--RTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAED 257
Query: 193 TAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDY----VTLCVLPMFHVFG 248
+LY+SG+TG KG + T ++ + T DY + C + V G
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATT-----FKYVFDYHPGDIYWCTADVGWVTG 312
Query: 249 LSFVVYAQLQKGNCVVSMRKF-DLETALR---AIEKYRVTHWWVVPPIILAL-AKNVSLV 303
S+++Y L G + + T R ++K++V + P I AL A+ +
Sbjct: 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI 372
Query: 304 KKFDLSSLKGIGSGAAPLRKELVEECSKNL--PTVTVFQGYGMTETCGVV---------- 351
+ D SSL+ +GS P+ E E K + V + TET G +
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL 432
Query: 352 ---TVENPLLGVQ-----NSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELW-------- 395
+ P GVQ N G E +V D+ P Q L+
Sbjct: 433 KAGSATRPFFGVQPALVDNEGHPQE--GATEGNLVITDSW----PGQARTLFGDHERFEQ 486
Query: 396 ----VRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAV 448
+ GD DE G +I R+ +++ +G ++ E+E LV+HP+I +A
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 449 VIPFPDPEAGEVPIAYVV 466
V+ P G+ AYV
Sbjct: 547 VVGIPHAIKGQAIYAYVT 564
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 203/498 (40%), Gaps = 79/498 (15%)
Query: 33 LFRNSASYGSKSALI----DADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPN 88
L R+ G ++A+I D + +++ + V + ++ LG+ K DVV I+ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 89 SIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPE---------LWER 139
+ + +L IG + + ++ ++ + DSS +LV+T E L +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 140 VKDFNIPAVLLGSNHIVSPRGLRSSSNI-------VYFDELIELSGNASNFPDVSVKQTD 192
V D + H++ + R+ S+I +++ +LIE + + P+ ++ D
Sbjct: 202 VDDALKNPNVTSVEHVIVLK--RTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAED 257
Query: 193 TAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDY----VTLCVLPMFHVFG 248
+LY+SG+TG KG + T ++ + T DY + C + V G
Sbjct: 258 PLFILYTSGSTGKPKGVLHTTGGYLVYAATT-----FKYVFDYHPGDIYWCTADVGWVTG 312
Query: 249 LSFVVYAQLQKGNCVVSMRKF-DLETALR---AIEKYRVTHWWVVPPIILAL-AKNVSLV 303
S+++Y L G + + T R ++K++V + P I AL A+ +
Sbjct: 313 HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI 372
Query: 304 KKFDLSSLKGIGSGAAPLRKELVEECSKNL--PTVTVFQGYGMTETCGVV---------- 351
+ D SSL+ +GS P+ E E K + V + TET G +
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL 432
Query: 352 ---TVENPLLGVQ-----NSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELW-------- 395
+ P GVQ N G E +V D+ P Q L+
Sbjct: 433 KAGSATRPFFGVQPALVDNEGHPQE--GATEGNLVITDSW----PGQARTLFGDHERFEQ 486
Query: 396 ----VRGPILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAV 448
+ GD DE G +I R+ +++ +G ++ E+E LV+HP+I +A
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 449 VIPFPDPEAGEVPIAYVV 466
V+ P G+ AYV
Sbjct: 547 VVGIPHAIKGQAIYAYVT 564
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 113/473 (23%), Positives = 197/473 (41%), Gaps = 63/473 (13%)
Query: 32 FLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQ 91
L +A YG + A+ ++ ++ + + +++ GF+ LG+ + D V++ PN +
Sbjct: 30 LLRDRAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE 87
Query: 92 FPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLG 151
F + + +G + A P + SE++ + + + IP G
Sbjct: 88 FFEVIFALFRLGALPVFALPSHRSSEITYFCE-------------FAEAAAYIIPDAYSG 134
Query: 152 SNHIVSPRGLRSS----SNIVYFDE------LIELSGNASNFPDVSVKQTDTAALLYSSG 201
++ R ++S NI+ E L +L P+ VK +D A L S G
Sbjct: 135 FDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPE--VKSSDVAFLQLSGG 192
Query: 202 TTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVT--LCVLPMFHVFGLSFV-VYAQLQ 258
+TG+ K TH ++I SL +++ LD+ T L LPM H + LS V L
Sbjct: 193 STGLSKLIPRTHDDYI-YSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248
Query: 259 KGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGA 318
G VV + A IE+ +VT +VPP+ + S ++ DLSSL+ + G
Sbjct: 249 AGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAAS-SRRDDLSSLQVLQVGG 307
Query: 319 APLRKELVEECSKNLPTVTVFQGYGMTE-TCGVVTVENPLLGVQNSGSTGTLVAGVEAQI 377
A E K + T+ Q +GM E +++P + N + G ++ +
Sbjct: 308 AKFSAEAARRV-KAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVN--TQGKPMSPYDESR 364
Query: 378 VCVDTLKPLPPNQVGELWVRGPILM---------------------PGDLGYFDEHGQLF 416
V D + + P + G L RGP + GD+ G +
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424
Query: 417 IVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV 466
+ R K+ I G +V E+E L++HP + DA ++ PD GE +++
Sbjct: 425 VEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFII 477
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 113/461 (24%), Positives = 198/461 (42%), Gaps = 39/461 (8%)
Query: 17 PALVLPQDPNL-SMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLG 75
PA + P L + +LFR + + K+A ID D+G S T+ + + + + R LG
Sbjct: 12 PAATVEAPPALFNFAAYLFRLNETRAGKTAYID-DTG-STTYGELEERARRFASALRTLG 69
Query: 76 VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPE 135
V + +L+ +++ P+ LG + G + AN + T ++ + S + V+
Sbjct: 70 VHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGA 129
Query: 136 LWERVKDFNIPAVLLGSNHIVS-PRGLRSSSNIV-YFDELIELSGNASNFPDVSVKQTDT 193
L + V A G IVS PR S + F+ELI+ + A+ D
Sbjct: 130 LVQNVTQALESAEHDGCQLIVSQPR--ESEPRLAPLFEELIDAAAPAAKAAATGCD--DI 185
Query: 194 AALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVV 253
A LYSSG+TG KG + TH N ++ + A L A + V +F +GL +
Sbjct: 186 AFWLYSSGSTGKPKGTVHTHANLYWTAELYA-KPILGIAENDVVFSAAKLFFAYGLGNGL 244
Query: 254 YAQLQKGNCVVSMRKFDLETALRA-IEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLK 312
L G + M + A+ A + ++R T ++ VP + + + +L + D+ +++
Sbjct: 245 TFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADV-AIR 303
Query: 313 GIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAG 372
S L +E+ E + + + G G TE + G G+TG V G
Sbjct: 304 ICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRA--GAVEYGTTGRPVPG 360
Query: 373 VEAQIVCVDTLKPLPPNQVGELWVRGP--------------------ILMPGDLGYFDEH 412
E ++ + +P +VG+L+++GP + GD +
Sbjct: 361 YEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPN 419
Query: 413 GQLFIVDRIKELIKCNG---FQVELEGVLVSHPEILDAVVI 450
G R +++K +G VE+E VLV H +L+A V+
Sbjct: 420 GCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVV 460
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 111/486 (22%), Positives = 197/486 (40%), Gaps = 53/486 (10%)
Query: 27 LSMVHFLFRNSASYG-SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIF 85
+ V+ + R +A+ AL G LT ++ ++ V V+ G+ V +
Sbjct: 1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVV 60
Query: 86 APNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNI 145
APNS I +L + +G + NP +EL++ +K ++ V + +V D
Sbjct: 61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRG--EMTAAVIAVGRQVAD--- 115
Query: 146 PAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAA---LLYSSGT 202
+ S S + I++ +L+ S P + Q + A + Y+SGT
Sbjct: 116 --AIFQSG---------SGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGT 164
Query: 203 TGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNC 262
TG+ K AI+ + + L + L V L ++P++HV G V+ A L
Sbjct: 165 TGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224
Query: 263 VVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLV-KKFDLSSLKGIGSGAAPL 321
V + +F AL+ +++ +VT + P + ALA + L SL+ + A +
Sbjct: 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM 284
Query: 322 RKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLG-------------VQNSGSTGT 368
++E ++LP V GYG TE + + P G V+ G
Sbjct: 285 PDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDE 343
Query: 369 LVA-GVEAQIVCVDTLKPL-----PPNQVGEL----WVRGPILMPGDLGYFDEHGQLFIV 418
+VA G E +++ + P E W R D+ + G + I+
Sbjct: 344 IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYR-----TSDVAVWTPEGTVRIL 398
Query: 419 DRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 475
R+ ++I G + E+E VL + P + + VVI D G+ A VV +L+
Sbjct: 399 GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
Query: 476 EDVQKF 481
+ + F
Sbjct: 459 DALDTF 464
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/486 (22%), Positives = 196/486 (40%), Gaps = 53/486 (10%)
Query: 27 LSMVHFLFRNSASYG-SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIF 85
+ V+ + R +A+ AL G LT ++ ++ V V+ G+ V +
Sbjct: 1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVV 60
Query: 86 APNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNI 145
APNS I +L + +G + NP +EL++ +K ++ V + +V D
Sbjct: 61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRG--EMTAAVIAVGRQVAD--- 115
Query: 146 PAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAA---LLYSSGT 202
+ S S + I++ +L+ S P + Q + A + Y+SGT
Sbjct: 116 --AIFQSG---------SGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGT 164
Query: 203 TGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNC 262
TG+ K AI+ + + L + L V L ++P++HV G V+ A L
Sbjct: 165 TGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224
Query: 263 VVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLV-KKFDLSSLKGIGSGAAPL 321
V + +F AL+ +++ +VT + P + ALA + L SL+ + A +
Sbjct: 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM 284
Query: 322 RKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLG-------------VQNSGSTGT 368
++E ++LP V YG TE + + P G V+ G
Sbjct: 285 PDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDE 343
Query: 369 LVA-GVEAQIVCVDTLKPL-----PPNQVGEL----WVRGPILMPGDLGYFDEHGQLFIV 418
+VA G E +++ + P E W R D+ + G + I+
Sbjct: 344 IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYR-----TSDVAVWTPEGTVRIL 398
Query: 419 DRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 475
R+ ++I G + E+E VL + P + + VVI D G+ A VV +L+
Sbjct: 399 GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
Query: 476 EDVQKF 481
+ + F
Sbjct: 459 DALDTF 464
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 110/486 (22%), Positives = 196/486 (40%), Gaps = 53/486 (10%)
Query: 27 LSMVHFLFRNSASYG-SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIF 85
+ V+ + R +A+ AL G LT ++ ++ V V+ G+ V +
Sbjct: 1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVV 60
Query: 86 APNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNI 145
APNS I +L + +G + NP +EL++ +K ++ V + +V D
Sbjct: 61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRG--EMTAAVIAVGRQVAD--- 115
Query: 146 PAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAA---LLYSSGT 202
+ S S + I++ +L+ S P + Q + A + Y+SGT
Sbjct: 116 --AIFQSG---------SGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGT 164
Query: 203 TGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNC 262
TG+ K AI+ + + L + L V L ++P++HV G V+ A L
Sbjct: 165 TGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224
Query: 263 VVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLV-KKFDLSSLKGIGSGAAPL 321
V + +F AL+ +++ +VT + P + ALA + L SL+ + A +
Sbjct: 225 YVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM 284
Query: 322 RKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLG-------------VQNSGSTGT 368
++E ++LP V YG TE + + P G V+ G
Sbjct: 285 PDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDE 343
Query: 369 LVA-GVEAQIVCVDTLKPL-----PPNQVGEL----WVRGPILMPGDLGYFDEHGQLFIV 418
+VA G E +++ + P E W R D+ + G + I+
Sbjct: 344 IVANGEEGELIVAASDSAFVGYLNQPEATAEKLQDGWYR-----TSDVAVWTPEGTVRIL 398
Query: 419 DRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 475
R+ ++I G + E+E VL + P + + VVI D G+ A VV +L+
Sbjct: 399 GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
Query: 476 EDVQKF 481
+ + F
Sbjct: 459 DALDTF 464
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 110/486 (22%), Positives = 196/486 (40%), Gaps = 53/486 (10%)
Query: 27 LSMVHFLFRNSASYG-SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIF 85
+ V+ + R +A+ AL G LT ++ ++ V V+ G+ V +
Sbjct: 1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVV 60
Query: 86 APNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNI 145
APNS I +L + +G + NP +EL++ +K ++ V + +V D
Sbjct: 61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRG--EMTAAVIAVGRQVAD--- 115
Query: 146 PAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAA---LLYSSGT 202
+ S S + I++ +L+ S P + Q + A + Y+SGT
Sbjct: 116 --AIFQSG---------SGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGT 164
Query: 203 TGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNC 262
TG+ K AI+ + + L + L V L ++P++HV G V+ A L
Sbjct: 165 TGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224
Query: 263 VVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLV-KKFDLSSLKGIGSGAAPL 321
V + +F AL+ +++ +VT + P + ALA + L SL+ + A +
Sbjct: 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM 284
Query: 322 RKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLG-------------VQNSGSTGT 368
++E ++LP V YG TE + + P G V+ G
Sbjct: 285 PDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDE 343
Query: 369 LVA-GVEAQIVCVDTLKPL-----PPNQVGEL----WVRGPILMPGDLGYFDEHGQLFIV 418
+VA G E +++ + P E W R D+ + G + I+
Sbjct: 344 IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYR-----TSDVAVWTPEGTVRIL 398
Query: 419 DRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 475
R+ ++I G + E+E VL + P + + VVI D G+ A VV +L+
Sbjct: 399 GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
Query: 476 EDVQKF 481
+ + F
Sbjct: 459 DALDTF 464
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 110/486 (22%), Positives = 196/486 (40%), Gaps = 53/486 (10%)
Query: 27 LSMVHFLFRNSASYG-SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIF 85
+ V+ + R +A+ AL G LT ++ ++ V V+ G+ V +
Sbjct: 1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVV 60
Query: 86 APNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNI 145
APNS I +L + +G + NP +EL++ +K ++ V + +V D
Sbjct: 61 APNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRG--EMTAAVIAVGRQVAD--- 115
Query: 146 PAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAA---LLYSSGT 202
+ S S + I++ +L+ S P + Q + A + Y+SGT
Sbjct: 116 --AIFQSG---------SGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGT 164
Query: 203 TGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNC 262
TG+ K AI+ + + L + L V L ++P++HV G V+ A L
Sbjct: 165 TGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224
Query: 263 VVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLV-KKFDLSSLKGIGSGAAPL 321
V + +F AL+ +++ +VT + P + ALA + L SL+ + A +
Sbjct: 225 YVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM 284
Query: 322 RKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLG-------------VQNSGSTGT 368
++E ++LP V YG TE + + P G V+ G
Sbjct: 285 PDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDE 343
Query: 369 LVA-GVEAQIVCVDTLKPL-----PPNQVGEL----WVRGPILMPGDLGYFDEHGQLFIV 418
+VA G E +++ + P E W R D+ + G + I+
Sbjct: 344 IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYR-----TSDVAVWTPEGTVRIL 398
Query: 419 DRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 475
R+ ++I G + E+E VL + P + + VVI D G+ A VV +L+
Sbjct: 399 GRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458
Query: 476 EDVQKF 481
+ + F
Sbjct: 459 DALDTF 464
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 111/456 (24%), Positives = 186/456 (40%), Gaps = 58/456 (12%)
Query: 53 ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPV 112
L++ + + ++ G+ K D L+ PN +F I ++ G + A
Sbjct: 54 RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYS 113
Query: 113 YTVSELSKQVKDSSPKLVV--------TVPELWERVKDFNI-PAVLLGSNHIVSPRGLRS 163
+ EL+ +K PKL++ + + + + D N+ P ++L NH + GL
Sbjct: 114 HRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGL-- 171
Query: 164 SSNIVYFDELIELSGNASNFPDVSVKQTDTAALLY-SSGTTGVGKGAILTHKNFIASSLM 222
L + A F D S D A S G+TG K TH ++ S
Sbjct: 172 ---------LDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRA 222
Query: 223 TAMDQELAGALDYVT--LCVLPMFHVFGLSFV-VYAQLQKGNCVVSMRKFDLETALRAIE 279
+A E+ G L+ T LC LP H F LS L G CVV + I+
Sbjct: 223 SA---EICG-LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQ 278
Query: 280 KYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVF 339
+++V +VP ++ + + K + SLK + G A + L + + L +
Sbjct: 279 RHQVNMASLVPSAVIMWLEKAAQYKD-QIQSLKLLQVGGASFPESLARQVPEVL-NCKLQ 336
Query: 340 QGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVD-TLKPLPPNQVGELWVRG 398
Q +GM E G+V + +T + +I VD + +P ++G L RG
Sbjct: 337 QVFGMAE--GLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRG 394
Query: 399 PILMPG-------DLGYFDEH--------------GQLFIVDRIKELIKCNGFQV---EL 434
P G + FDE G L +V RIK+ I G ++ E+
Sbjct: 395 PYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEI 454
Query: 435 EGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV-RSP 469
E +++ HPE++ A ++ D + GE A++V R+P
Sbjct: 455 EKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNP 490
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/509 (21%), Positives = 211/509 (41%), Gaps = 73/509 (14%)
Query: 35 RNSASYGSKSALI----DADSGESLTFSQFKSIVIKVSHGFRH-LGVTKHDVVLIFAPNS 89
R++ +K A+I + G S+T+ + V +V+ + +GV K D V ++ P
Sbjct: 90 RHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMV 149
Query: 90 IQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVL 149
+ I LL + IG I + ++ + L ++ D K+V+T E K ++
Sbjct: 150 PEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIV 209
Query: 150 -------LGSNHIVSPRGLRSSSNIVY----FDELIELSGNASNFPDVSVKQTDTAALLY 198
G H++ R + S + D E + +P V D LLY
Sbjct: 210 DDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLY 269
Query: 199 SSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQ 258
+SG+TG KG + ++ +L+T M + V + + G ++VVY L
Sbjct: 270 TSGSTGAPKGVQHSTAGYLLGALLT-MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLL 328
Query: 259 KGNCVVSM----------RKFDLETALRAIEKYRVTHWWVVPPIILALAK-NVSLVKKFD 307
G + R +D+ I++++VT ++V P + L + S ++
Sbjct: 329 YGCATLVFEGTPAYPNYSRYWDI------IDEHKVTQFYVAPTALRLLKRAGDSYIENHS 382
Query: 308 LSSLKGIGSGAAPLRKELVEECSKNL--PTVTVFQGYGMTETCGVVTVENPLLG---VQN 362
L SL+ +GS P+ E+ E S+ + + + Y TE+ + PL G
Sbjct: 383 LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT--PLAGGVTPMK 440
Query: 363 SGSTGTLVAGVEAQIVCVDT--------------LKPLPPNQVGELWVRGPILMPGDL-- 406
GS G++A ++ +T +K P+ +W + L
Sbjct: 441 PGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP 500
Query: 407 --GYF--------DEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFP 453
GY+ D+ G ++I+ R+ +++ +G ++ E+E ++ P + + V+ F
Sbjct: 501 YPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFN 560
Query: 454 DPEAGEVPIAYVV---RSPNSSLTKEDVQ 479
D G+ A+VV +S S+ T +++Q
Sbjct: 561 DDLTGQAVAAFVVLKNKSSWSTATDDELQ 589
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 111/473 (23%), Positives = 192/473 (40%), Gaps = 63/473 (13%)
Query: 32 FLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQ 91
L +A YG + A+ ++ ++ + + +++ GF+ LG+ + D V++ PN +
Sbjct: 30 LLRDRAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE 87
Query: 92 FPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLG 151
F + + +G + A P + SE++ + + + IP G
Sbjct: 88 FFEVIFALFRLGALPVFALPSHRSSEITYFCE-------------FAEAAAYIIPDAYSG 134
Query: 152 SNHIVSPRGLRSS----SNIVYFDE------LIELSGNASNFPDVSVKQTDTAALLYSSG 201
++ R ++S NI+ E L +L P+ VK +D A L S G
Sbjct: 135 FDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPE--VKSSDVAFLQLSGG 192
Query: 202 TTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVT--LCVLPMFHVFGLSFV-VYAQLQ 258
+TG+ K TH ++I SL +++ LD+ T L LP H + LS V L
Sbjct: 193 STGLSKLIPRTHDDYI-YSLKRSVE---VCWLDHSTVYLAALPXAHNYPLSSPGVLGVLY 248
Query: 259 KGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGA 318
G VV + A IE+ +VT +VPP+ S ++ DLSSL+ + G
Sbjct: 249 AGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAAS-SRRDDLSSLQVLQVGG 307
Query: 319 APLRKELVEECSKNLPTVTVFQGYGMTE-TCGVVTVENPLLGVQNSGSTGTLVAGVEAQI 377
A E K + T+ Q +G E +++P + N + G + +
Sbjct: 308 AKFSAEAARRV-KAVFGCTLQQVFGXAEGLVNYTRLDDPEEIIVN--TQGKPXSPYDESR 364
Query: 378 VCVDTLKPLPPNQVGELWVRGPILM---------------------PGDLGYFDEHGQLF 416
V D + + P + G L RGP + GD+ G +
Sbjct: 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV 424
Query: 417 IVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVV 466
+ R K+ I G +V E+E L++HP + DA + PD GE +++
Sbjct: 425 VEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFII 477
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 194/494 (39%), Gaps = 74/494 (14%)
Query: 12 YRSLRP-ALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHG 70
+ LRP + + P + VH LF A+ + + ++ E LT+ +++H
Sbjct: 58 WTDLRPTGPAVERAPAGACVHELFEAQAARAPDAVALLHEADE-LTYGALNERANRLAHR 116
Query: 71 FRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLV 130
LGV +V + + LL V+ GG T +P + V L+ ++D+ L+
Sbjct: 117 LVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLL 176
Query: 131 VTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQ 190
VT L R+ + + +Y ++ A N V
Sbjct: 177 VTSRPLSGRL----------------------TGTTTLYVEDEAASDAPAGNLA-TGVGP 213
Query: 191 TDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAG-ALDYVTLCVLPM-FHVFG 248
D A ++++SG+TG KG + H+ T + Q+ AG D V L P+ + FG
Sbjct: 214 EDVACVMFTSGSTGRPKGVMSPHRALTG----TYLGQDYAGFGPDEVFLQCSPVSWDAFG 269
Query: 249 LSFVVYAQLQKGNCVV-SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFD 307
L + A L CV+ S + D + ++ VT + + L V + F+
Sbjct: 270 LE-LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP--EAFE 326
Query: 308 LSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGST- 366
++ +G P V + ++ P + + GYG E+ G T + ++ SG+
Sbjct: 327 --GVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG-FTTHHAVVAGDLSGTAL 383
Query: 367 --GTLVAGVEAQIVCVDTLKPLPPNQVGELWVRG---------------------PILMP 403
G +AG A ++ D LKP +GEL+V G P P
Sbjct: 384 PIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGP 442
Query: 404 --------GDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPF 452
GDL G L V R + +K GF+V E+E LV HP + A V+
Sbjct: 443 GGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQ 502
Query: 453 PDPEAGEVPIAYVV 466
+ +AYVV
Sbjct: 503 DSRLGDKQLVAYVV 516
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 108/479 (22%), Positives = 186/479 (38%), Gaps = 52/479 (10%)
Query: 33 LFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQF 92
L R + AL G LT ++ ++ V V+ G+ V + APNS
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 93 PICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGS 152
I +L + +G + NP +EL++ +K + V + +V D + S
Sbjct: 68 VIAILALHRLGAVPALLNPRLKSAELAELIKRG--EXTAAVIAVGRQVAD-----AIFQS 120
Query: 153 NHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAA---LLYSSGTTGVGKGA 209
S + I++ +L+ S P + Q + A + Y+SGTTG+ K A
Sbjct: 121 G---------SGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAA 171
Query: 210 ILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKF 269
I+ + + L + L V L + P++HV G V+ A L V + +F
Sbjct: 172 IIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEF 231
Query: 270 DLETALRAIEKYRVTHWWVVPPIILALAKNVSLV-KKFDLSSLKGIGSGAAPLRKELVEE 328
AL+ +++ +VT + P + ALA + L SL+ + A ++E
Sbjct: 232 RPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLET 291
Query: 329 CSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNS-------------GSTGTLVA-GVE 374
++LP V YG TE + P G + + G +VA G E
Sbjct: 292 VHQHLPGEKV-NIYGTTEAXNSLYXRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEE 350
Query: 375 AQIVCVDTLKPL-----PPNQVGEL----WVRGPILMPGDLGYFDEHGQLFIVDRIKELI 425
+++ + P E W R D+ + G + I+ R+ + I
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAEKLQDGWYR-----TSDVAVWTPEGTVRILGRVDDXI 405
Query: 426 KCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKF 481
G + E+E VL + P + + VVI D G+ A VV +L+ + + F
Sbjct: 406 ISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/425 (21%), Positives = 173/425 (40%), Gaps = 49/425 (11%)
Query: 75 GVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVP 134
G+ + D V + P ++ + +LG I G I +++ +++ S K +V
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 135 ELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTA 194
E+ + V L +VS + S + F +L+ + + V + +
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK---SCDGWLNFKKLLNEASTTHHC--VETGSQEAS 209
Query: 195 ALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAG--ALDYVTLCVLPMFHVFGLSFV 252
A+ ++SGT+G+ K + ++ + L MD G A D + + + +
Sbjct: 210 AIYFTSGTSGLPK---MAEHSYSSLGLKAKMDAGWTGLQASD-IMWTISDTGWILNILCS 265
Query: 253 VYAQLQKGNC--VVSMRKFDLETALRAIEKYRVTHWWVVPPII-LALAKNVSLVKKFDLS 309
+ G C V + KFD L+ + Y + P + + L +++S K L
Sbjct: 266 LMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQ 325
Query: 310 SLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTL 369
+ +G P E +E + + + YG TET G+ + + + ++ G GT
Sbjct: 326 NCVTVGESLLP---ETLENWRAQT-GLDIRESYGQTET-GLTCMVSKTMKIK-PGYMGTA 379
Query: 370 VAGVEAQIVCVDTLKPLPPNQVGELWVR-------------------------GPILMPG 404
+ + QI+ D LPP G++ +R G + G
Sbjct: 380 ASCYDVQII-DDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLG 438
Query: 405 DLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVP 461
D G DE G + R ++I +G+++ E+E L+ HP +++ VI PDP GEV
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
Query: 462 IAYVV 466
A+VV
Sbjct: 499 KAFVV 503
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/425 (21%), Positives = 173/425 (40%), Gaps = 49/425 (11%)
Query: 75 GVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVP 134
G+ + D V + P ++ + +LG I G I +++ +++ S K +V
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 135 ELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTA 194
E+ + V L +VS + S + F +L+ + + V + +
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK---SCDGWLNFKKLLNEASTTHHC--VETGSQEAS 209
Query: 195 ALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAG--ALDYVTLCVLPMFHVFGLSFV 252
A+ ++SGT+G+ K + ++ + L MD G A D + + + +
Sbjct: 210 AIYFTSGTSGLPK---MAEHSYSSLGLKAKMDAGWTGLQASD-IMWTISDTGWILNILCS 265
Query: 253 VYAQLQKGNC--VVSMRKFDLETALRAIEKYRVTHWWVVPPII-LALAKNVSLVKKFDLS 309
+ G C V + KFD L+ + Y + P + + L +++S K L
Sbjct: 266 LMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQ 325
Query: 310 SLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTL 369
+ +G P E +E + + + YG TET G+ + + + ++ G GT
Sbjct: 326 NCVTVGESLLP---ETLENWRAQT-GLDIRESYGQTET-GLTCMVSKTMKIK-PGYMGTA 379
Query: 370 VAGVEAQIVCVDTLKPLPPNQVGELWVR-------------------------GPILMPG 404
+ + QI+ D LPP G++ +R G + G
Sbjct: 380 ASCYDVQII-DDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLG 438
Query: 405 DLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVP 461
D G DE G + R ++I +G+++ E+E L+ HP +++ VI PDP GEV
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498
Query: 462 IAYVV 466
A+VV
Sbjct: 499 KAFVV 503
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 163/400 (40%), Gaps = 42/400 (10%)
Query: 12 YRSLRP-ALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHG 70
+ LRP + + P + VH LF A+ + + ++ E LT+ +++H
Sbjct: 58 WTDLRPTGPAVERAPAGACVHELFEAQAARAPDAVALLHEADE-LTYGALNERANRLAHR 116
Query: 71 FRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLV 130
LGV +V + + LL V+ GG T +P + V L+ ++D+ L+
Sbjct: 117 LVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLL 176
Query: 131 VTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQ 190
VT L R+ + + +Y ++ A N V
Sbjct: 177 VTSRPLSGRL----------------------TGTTTLYVEDEAASDAPAGNLA-TGVGP 213
Query: 191 TDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAG-ALDYVTLCVLPM-FHVFG 248
D A ++++SG+TG KG + H+ T + Q+ AG D V L P+ + FG
Sbjct: 214 EDVACVMFTSGSTGRPKGVMSPHRALTG----TYLGQDYAGFGPDEVFLQCSPVSWDAFG 269
Query: 249 LSFVVYAQLQKGNCVV-SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFD 307
L + A L CV+ S + D + ++ VT + + L V + F+
Sbjct: 270 LE-LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP--EAFE 326
Query: 308 LSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGST- 366
++ +G P V + ++ P + + GYG E+ G T + ++ SG+
Sbjct: 327 --GVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMG-FTTHHAVVAGDLSGTAL 383
Query: 367 --GTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPG 404
G +AG A ++ D LKP +GEL+V G L G
Sbjct: 384 PIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHG 422
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 109/447 (24%), Positives = 172/447 (38%), Gaps = 84/447 (18%)
Query: 46 LIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHD-VVLIFAPNSIQFPICLLGVIAIGG 104
++ + E+ T+ Q ++ + G D V+L+FAP + LG + G
Sbjct: 32 FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAP-GLPLIQAFLGCLYAGC 90
Query: 105 IATTANPVYTVSELSKQ---VKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGL 161
IA P L K V +S P +V+ + + +K F A L +N P+ L
Sbjct: 91 IAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIAD---HIKKFT--ADELNTN----PKFL 141
Query: 162 RSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSL 221
+ + + E IEL+ ++S P S+K D A L Y+SG+T KG ++H N + +
Sbjct: 142 KIPAIAL---ESIELNRSSSWQP-TSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDN-- 195
Query: 222 MTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDL----ETALRA 277
+ + + + LP H GL + + G + F + L+
Sbjct: 196 LNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKH 255
Query: 278 IEKYRVTHWWVVPPIILALAKNVSLVKK--FDLSSLKGIGSGAAPLRKELVEECSKNLPT 335
I KY+ T K + KK DLSS +GA P+R+E E +
Sbjct: 256 ITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKE 315
Query: 336 V-----TVFQGYGMTETCGVVTVENP-------------------LLGVQNSGSTGTLVA 371
+ YG+ E +VT P NS + LV+
Sbjct: 316 FGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVS 375
Query: 372 G----VEAQIVCVDTLKPLPPNQVGELWVR--------------------GPI------- 400
E +I+ DTL P +QVGE+WV+ G I
Sbjct: 376 SGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSA 435
Query: 401 --LMPGDLGYFDEHGQLFIVDRIKELI 425
L GDLG+ E +L++ RIK+LI
Sbjct: 436 IYLRTGDLGFLHE-NELYVTGRIKDLI 461
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 112/495 (22%), Positives = 184/495 (37%), Gaps = 63/495 (12%)
Query: 26 NLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIF 85
+L + L R++AS A+ID + L++ + ++ R G+ + L+
Sbjct: 26 DLPLTDILTRHAAS--DSIAVIDGE--RQLSYRELNQAADNLACSLRRQGIKPGETALVQ 81
Query: 86 APNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNI 145
N + I ++ +G A + SEL+ P L++ +
Sbjct: 82 LGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQ---------- 131
Query: 146 PAVLLGSNHIVSPRGLRSSSNIVYFDELIELSG-----NASNFPDVSVKQT-----DTAA 195
A+ G + + + SS +V +L+ SG +A N P T + A
Sbjct: 132 HALFSGDDFLNTFVTEHSSIRVV---QLLNDSGEHNLQDAINHPAEDFTATPSPADEVAY 188
Query: 196 LLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFV-VY 254
S GTTG K TH ++ S + + Y LC +P H + +S
Sbjct: 189 FQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRY--LCAIPAAHNYAMSSPGSL 246
Query: 255 AQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPII-LALAKNVSLVKKFDLSSLKG 313
G VV IEK++V +VPP + L L + + L+SLK
Sbjct: 247 GVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKL 306
Query: 314 IGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGV 373
+ G A L L + + Q +GM E G+V + T
Sbjct: 307 LQVGGARLSATLAARIPAEI-GCQLQQVFGMAE--GLVNYTRLDDSAEKIIHTQGYPMCP 363
Query: 374 EAQIVCVDTL-KPLPPNQVGELWVRGP---------------------ILMPGDLGYFDE 411
+ ++ D PLP +VG L RGP GDL D
Sbjct: 364 DDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP 423
Query: 412 HGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAY-VVR 467
G + + R K+ I G ++ E+E +L+ HP ++ A ++ D GE AY VV+
Sbjct: 424 EGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK 483
Query: 468 SPNSSLTKEDVQKFV 482
P L V++F+
Sbjct: 484 EP---LRAVQVRRFL 495
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 51 SGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTAN 110
SG++L++ + +++ + G K VV ++ S++ I +LGV+ G +
Sbjct: 486 SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVD 545
Query: 111 PVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYF 170
P +S + DS+ ++T E+ E+ + L + ++
Sbjct: 546 PKLPEDRISYMLADSAAACLLTHQEMKEQAAE------------------LPYTGTTLFI 587
Query: 171 DELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKN 215
D+ AS+ P ++ D A ++Y+SGTTG KG I TH N
Sbjct: 588 DDQTRFEEQASD-PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 404 GDLGYFDEHGQLFIVDRIKELIKCNGFQVELEGV---LVSHPEILDAVVIPFPDPEAGEV 460
GDL + G + RI + +K G ++ELE + L +P + DAVV+ E+G+
Sbjct: 843 GDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVA-DRHESGDA 901
Query: 461 PI-AYVVRSPNSSLTKEDVQ 479
I AY+V + L+ EDV+
Sbjct: 902 SINAYLVN--RTQLSAEDVK 919
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 125/333 (37%), Gaps = 70/333 (21%)
Query: 185 DVSVKQ---TDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCV- 240
DV++++ D A L Y+SG+T +G I+TH+ A+ + D L CV
Sbjct: 166 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHD---GIKLRPGDRCVS 222
Query: 241 -LPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETA----LRAIEKYRVTHWWVVPPIILA 295
LP +H GL + + V +R D L+ I K R T V PP
Sbjct: 223 WLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTV-SVAPPFGYE 281
Query: 296 LAK---NVSLVKKFDLSSLKGIGSGAAPLRKELVE---ECSK--NLPTVTVFQGYGMTET 347
L + N + + DLS + G GA P+ E + EC + N T YG+ E
Sbjct: 282 LCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAEN 341
Query: 348 C----------GVVT--VENPLLGVQNSG-STGTLVAGVEAQIVCVDTL----------- 383
GVV V+ +L Q + G V + C L
Sbjct: 342 ALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEA 401
Query: 384 -KPLPPNQVGELWVRGPILMP--------------------GDLGYFDEHGQLFIVDRIK 422
P+ VG + + GP L GDLGY + G L++ RIK
Sbjct: 402 GXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLLD-GYLYVTGRIK 460
Query: 423 ELIKCNGFQV---ELEGVLVSHPEILDAVVIPF 452
+LI G + ++E + PEI I F
Sbjct: 461 DLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAF 493
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 132/328 (40%), Gaps = 38/328 (11%)
Query: 171 DELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELA 230
+EL+E G + + D VK+ +T ++Y+SG+TG KG ++ N + + D ++
Sbjct: 124 EELLENEGGSVS-QDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS 182
Query: 231 GALDYVTLCVLPMFHVFGLSFV-VYAQLQKG---NCVVSMRKFDLETALRAIEKYRVTHW 286
G ++ F LS + +Y LQ G +CV + ++K + W
Sbjct: 183 GGKIFLNQAPFS----FDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVW 238
Query: 287 WVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTE 346
P + + + + + G L + + + P +F YG TE
Sbjct: 239 TSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV-LPVSVAKALLERFPKAKIFNTYGPTE 297
Query: 347 -TCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTL-KPLPPNQVGELWVRGPILMPG 404
T V +VE + S S A + I +D +PLP + GE+ + GP + G
Sbjct: 298 ATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRG 357
Query: 405 DLGY-----------------------FDEHGQLFIVDRIKELIKCNGFQVELEGV---L 438
LG F + GQ+F R+ IK +G+++ELE + +
Sbjct: 358 YLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHV 417
Query: 439 VSHPEILDAVVIPFPDPEAGEVPIAYVV 466
+ AVVIP+ E IA +V
Sbjct: 418 RQSQYVRSAVVIPYQPNGTVEYLIAAIV 445
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 111/505 (21%), Positives = 188/505 (37%), Gaps = 90/505 (17%)
Query: 25 PNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLI 84
P +H LF S + I ++ E LT+ + +++ F G+ K +V I
Sbjct: 36 PRDKTIHQLFEEQVSKRPNNVAIVCEN-EQLTYHELNVKANQLARIFIEKGIGKDTLVGI 94
Query: 85 FAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKD-- 142
SI I +L V+ GG + Y + + DS ++++T L + +
Sbjct: 95 MMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ 154
Query: 143 FNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGT 202
FN + + I +R +N+ V K TD A ++Y+SGT
Sbjct: 155 FNGQVEIFEEDTI----KIREGTNL-----------------HVPSKSTDLAYVIYTSGT 193
Query: 203 TGVGKGAILTHKN------FIASSLMTAMDQELAGALDYVTL--CVLPMFHVFGLSFVVY 254
TG KG +L HK F +SL +++ G ++ V MF +Y
Sbjct: 194 TGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLY 252
Query: 255 AQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGI 314
L+ + + KF+ + I + +T + P ++ L + + +L
Sbjct: 253 IILK--DTINDFVKFE-----QYINQKEITVITLPPTYVVHLDPE----RILSIQTLITA 301
Query: 315 GSGAAPLRKELVEECSKNLPTVTVFQGYGMTET--CGVVTVENPLLGVQNSGSTGTLVAG 372
GS +P LV + + VT YG TET C V + G + + A
Sbjct: 302 GSATSP---SLVNKWKEK---VTYINAYGPTETTICATTWVATK----ETIGHSVPIGAP 351
Query: 373 VE-AQIVCVD-TLKPLPPNQVGEL-----------WVR----------------GPILMP 403
++ QI VD L+ + GEL W R +
Sbjct: 352 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 411
Query: 404 GDLGYFDEHGQLFIVDRIKELIKCNGFQVEL---EGVLVSHPEILDAVVIPFPDPEAGEV 460
GD + G + + RI +K G +VEL E +L+ H I + V D +
Sbjct: 412 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 471
Query: 461 PIAYVVRSPNSSLTKEDVQKFVAND 485
AY V + L E +++F + +
Sbjct: 472 LCAYFVSEKHIPL--EQLRQFSSEE 494
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 99/480 (20%), Positives = 182/480 (37%), Gaps = 64/480 (13%)
Query: 27 LSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFA 86
+ ++ + + +A ++A + D+ +T+ Q K ++H ++++
Sbjct: 1 MKLLEQIEKWAAETPDQTAFVWRDA--KITYKQLKEDSDALAHWISSEYPDDRSPIMVYG 58
Query: 87 PNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIP 146
+ I LG + G + + + ++S KL+++ + V D +
Sbjct: 59 HMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAV--TVTDLPV- 115
Query: 147 AVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVG 206
IVS L+ ++F GN N P+ +VK + ++Y+SG+TG
Sbjct: 116 -------RIVSEDNLKD----IFFTH----KGNTPN-PEHAVKGDENFYIIYTSGSTGNP 159
Query: 207 KGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFV-VYAQLQKGNCVVS 265
KG +T+ ++ + D L V L P F LS + +Y L G + +
Sbjct: 160 KGVQITYNCLVSFTKWAVEDFNLQTG--QVFLNQAPF--SFDLSVMDIYPSLVTGGTLWA 215
Query: 266 MRKFDL----ETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPL 321
+ K D+ + ++E+ + W P S + L ++K L
Sbjct: 216 IDK-DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFCGEVL 273
Query: 322 RKELVEECSKNLPTVTVFQGYGMTETCGVVT---VENPLLGVQNSGSTGTLVAGVEAQIV 378
E+ + + P T+ YG TE VT V +L S G + I+
Sbjct: 274 PNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIM 333
Query: 379 CVDTLKPLPPNQVGELWVRGP------------------------ILMPGDLGYFDEHGQ 414
D P + GE+ + GP GD GY E+G
Sbjct: 334 KEDGTIA-PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL 391
Query: 415 LFIVDRIKELIKCNGFQVELEGV---LVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS 471
LF R+ IK +G+++ELE + L + + AV++P E + +A VV +S
Sbjct: 392 LFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHS 451
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 130/330 (39%), Gaps = 46/330 (13%)
Query: 178 GNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVT 237
GN N P+ +VK + ++Y+SG+TG KG +T+ ++ + D L V
Sbjct: 132 GNTPN-PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTG--QVF 188
Query: 238 LCVLPMFHVFGLSFV-VYAQLQKGNCVVSMRKFDL----ETALRAIEKYRVTHWWVVPPI 292
L P F LS + +Y L G + ++ K D+ + ++E+ + W P
Sbjct: 189 LNQAPF--SFDLSVMDIYPSLVTGGTLWAIDK-DMIARPKDLFASLEQSDIQVWTSTPSF 245
Query: 293 ILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVT 352
S + L ++K L E+ + + P T+ YG TE VT
Sbjct: 246 AEMCLMEASFSESM-LPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVT 304
Query: 353 ---VENPLLGVQNSGSTGTLVAGVEAQIVCVD-TLKPLPPNQVGELWVRGP--------- 399
V +L S G + I+ D T+ P + GE+ + GP
Sbjct: 305 GIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIA--PDGEKGEIVIVGPSVSVGYLGS 362
Query: 400 ---------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQVELEGV---LVSH 441
GD GY E+G LF R+ IK +G+++ELE + L +
Sbjct: 363 PELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC 421
Query: 442 PEILDAVVIPFPDPEAGEVPIAYVVRSPNS 471
+ AV++P E + +A VV +S
Sbjct: 422 SYVEGAVIVPIKKGEKYDYLLAVVVPGEHS 451
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 22/214 (10%)
Query: 54 SLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTAN-PV 112
+LT+SQ + V+ G T D V+I AP +++ + LG + G IA + P
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCGSTG-DRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 113 YTVS-ELSKQV-KDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYF 170
V+ E S V DSSP ++T + V V+ R S +I+
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH------------VARRPGESPPSIIEV 164
Query: 171 DELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIAS--SLMTAMDQE 228
D L + N F + T A L Y+SG+T G +++H+N + LM+ +
Sbjct: 165 DLLDLDAPNGYTFKEDEYPST--AYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFAD 222
Query: 229 LAG--ALDYVTLCVLPMFHVFGLSFVVYAQLQKG 260
G + + LP +H GL + A + G
Sbjct: 223 TDGIPPPNSALVSWLPFYHDMGLVIGICAPILGG 256
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 107/301 (35%), Gaps = 42/301 (13%)
Query: 187 SVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHV 246
SVK D ++++SGTTG KG ++H N ++ + D L P +
Sbjct: 141 SVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPP--YS 198
Query: 247 FGLSFVVYA-QLQKGNCVVSMRK---FDLETALRAIEKYRVTHWWVVPPIILALAKNVSL 302
F LS + +A L G + ++ K D + I + V W P + A L
Sbjct: 199 FDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTP----SFADMAML 254
Query: 303 VKKF---DLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTE-TCGVVTVENPLL 358
F + +L L + + P+ + YG TE T + +E
Sbjct: 255 SDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITRE 314
Query: 359 GVQNSGSTGTLVAGVEAQIVCVDTL-KPLPPNQVGELWVRGPIL---------------- 401
V N ++ +D K L + GE+ V GP +
Sbjct: 315 MVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFF 374
Query: 402 --------MPGDLGYFDEHGQLFIVDRIKELIKCNGFQVELEGV---LVSHPEILDAVVI 450
GD+G E L R+ IK G+++ELE V L P + AV +
Sbjct: 375 TFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAV 434
Query: 451 P 451
P
Sbjct: 435 P 435
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Query: 54 SLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTAN-PV 112
+LT+SQ + V+ G T D V+I AP +++ + LG + G IA + P
Sbjct: 58 TLTWSQLYRRTLNVAQELSRCGSTG-DRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQ 116
Query: 113 YTVS-ELSKQV-KDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYF 170
V+ E S V DSSP ++T + V V+ R S +I+
Sbjct: 117 GGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH------------VARRPGESPPSIIEV 164
Query: 171 DELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKN 215
D L + N F + T A L Y+SG+T G + +H+N
Sbjct: 165 DLLDLDAPNGYTFKEDEYPST--AYLQYTSGSTRTPAGVVXSHQN 207
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 393 ELWVRGPILMP---GDLGYFDEHGQLFIVDRIKELIKCNGFQVE---LEGVLVSHPEILD 446
EL RG +L GD +DE G+L + R +K NG++++ LE P ILD
Sbjct: 387 ELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILD 446
Query: 447 AVVI 450
++
Sbjct: 447 CALL 450
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 92/233 (39%), Gaps = 34/233 (14%)
Query: 192 DTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGA---LDYVTLCVLPMFHVFG 248
D A ++Y+SGTTG KG + H N +A LAGA D+ +FH
Sbjct: 176 DMAYVIYTSGTTGNPKGVPVRHANVLAL---------LAGAPSVFDFSGDDRWLLFHSLS 226
Query: 249 LSFVV---YAQLQKGNCVVSMRKFDLETALRAIEKY-------RVTHWWVVPPIILALAK 298
F V + G +V + + A R E+Y VT P LAL +
Sbjct: 227 FDFSVWEIWGAFSTGAELVVLPHW----AARTPEQYLAVIIDRGVTVINQTPTAFLALTE 282
Query: 299 NVSLVKKFDLSSLKGIGSGAAPLRKELVEECSK--NLPTVTVFQGYGM---TETCGVVTV 353
++ D+S L+ + G L ++ +K L + GYG+ T +
Sbjct: 283 -AAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEI 341
Query: 354 ENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDL 406
L Q++ G + ++V D + + P + GELW+ G L G L
Sbjct: 342 TEAYL-AQDASIIGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYL 392
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 27/233 (11%)
Query: 194 AALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQ----------ELAGALDYVTLCVLPM 243
A LLY+SG+TG KG ++ N SS A + EL G ++ L
Sbjct: 178 AYLLYTSGSTGTPKGVRVSRHNL--SSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235
Query: 244 FHVFGLSFVVYAQLQKGNCVVSMRKFD-LETALRAIEKYRVTHWWVVPPIILALAKNVSL 302
G F+ + + G C V+ + L+ R + VTH +VP +L L
Sbjct: 236 DVHIGEXFLAW---RFGLCAVTGERLSXLDDLPRTFRELGVTHAGIVP----SLLDQTGL 288
Query: 303 VKKFDLSSLK--GIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGV 360
V + D L G+G R + + S + V V YG TE + +L
Sbjct: 289 VPE-DAPHLVYLGVGGEKXTPRTQQIWSSSDRVALVNV---YGPTEVT-IGCSAGRILPD 343
Query: 361 QNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGPILMPGDLGYFDEHG 413
++ G + A ++ + + + GEL + G ++ G L D G
Sbjct: 344 SDTRCIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKG 396
>pdb|1W9Z|A Chain A, Structure Of Bannavirus Vp9
pdb|1W9Z|B Chain B, Structure Of Bannavirus Vp9
pdb|1W9Z|C Chain C, Structure Of Bannavirus Vp9
Length = 283
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 272 ETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSK 331
ET LRA++K T VV LAL NV L KG A +KE+ +E ++
Sbjct: 4 ETELRALKKLSTTTSRVVGDSTLALPSNVKLS--------KGEVEKIAVTKKEMFDELAQ 55
Query: 332 -NLPTV 336
NLPT+
Sbjct: 56 CNLPTI 61
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 284 THWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEE 328
THW +V P + LVK L S +GS +AP+ E +EE
Sbjct: 503 THWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPI-IEFLEE 546
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,354,318
Number of Sequences: 62578
Number of extensions: 600340
Number of successful extensions: 1582
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1359
Number of HSP's gapped (non-prelim): 77
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)