Query 043601
Match_columns 488
No_of_seqs 184 out of 2195
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:57:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.2E-72 4E-77 572.4 49.4 466 7-487 4-502 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 2.7E-70 9.2E-75 555.9 49.5 469 2-487 2-509 (548)
3 3g7s_A Long-chain-fatty-acid-- 100.0 9.8E-70 3.4E-74 552.6 44.8 446 24-488 16-510 (549)
4 3rix_A Luciferase, luciferin 4 100.0 3.1E-70 1.1E-74 556.4 40.9 462 10-487 6-507 (550)
5 3r44_A Fatty acyl COA syntheta 100.0 5.3E-69 1.8E-73 542.9 40.0 437 26-487 15-480 (517)
6 1t5h_X 4-chlorobenzoyl COA lig 100.0 4.3E-68 1.5E-72 535.2 46.5 433 27-487 2-471 (504)
7 4fuq_A Malonyl COA synthetase; 100.0 6E-69 2.1E-73 540.7 40.0 435 31-487 4-467 (503)
8 3etc_A AMP-binding protein; ad 100.0 1.1E-67 3.7E-72 539.3 48.1 445 26-487 54-546 (580)
9 1pg4_A Acetyl-COA synthetase; 100.0 1.1E-67 3.9E-72 546.5 47.2 453 28-487 77-588 (652)
10 1mdb_A 2,3-dihydroxybenzoate-A 100.0 7.1E-68 2.4E-72 537.5 42.3 438 26-487 24-498 (539)
11 3fce_A D-alanine--poly(phospho 100.0 2.6E-67 9E-72 530.8 43.3 434 27-487 1-471 (512)
12 3tsy_A Fusion protein 4-coumar 100.0 5.3E-68 1.8E-72 574.1 39.6 471 9-487 45-549 (979)
13 3e7w_A D-alanine--poly(phospho 100.0 6.7E-67 2.3E-71 527.4 44.8 432 27-487 1-470 (511)
14 1ry2_A Acetyl-coenzyme A synth 100.0 5.6E-67 1.9E-71 541.4 44.5 455 28-487 83-604 (663)
15 1v25_A Long-chain-fatty-acid-C 100.0 1.6E-67 5.3E-72 535.2 38.1 443 26-487 17-503 (541)
16 1amu_A GRSA, gramicidin synthe 100.0 4.9E-66 1.7E-70 525.6 48.0 423 27-487 39-496 (563)
17 4gr5_A Non-ribosomal peptide s 100.0 1.6E-67 5.6E-72 538.4 37.1 428 26-487 74-538 (570)
18 3o83_A Peptide arylation enzym 100.0 5.8E-68 2E-72 538.7 33.2 441 27-487 30-507 (544)
19 3ivr_A Putative long-chain-fat 100.0 2.4E-67 8.2E-72 530.7 37.3 435 25-487 4-468 (509)
20 2v7b_A Benzoate-coenzyme A lig 100.0 2.7E-66 9.2E-71 525.5 43.7 443 27-488 23-500 (529)
21 3c5e_A Acyl-coenzyme A synthet 100.0 6.9E-66 2.3E-70 525.3 44.9 443 27-487 37-529 (570)
22 3l8c_A D-alanine--poly(phospho 100.0 5.1E-66 1.8E-70 522.7 40.1 434 27-487 4-479 (521)
23 3rg2_A Enterobactin synthase c 100.0 2.3E-65 7.8E-70 527.1 42.7 442 20-487 22-501 (617)
24 4dg8_A PA1221; ANL superfamily 100.0 6.1E-65 2.1E-69 521.7 41.8 407 24-467 24-466 (620)
25 3ipl_A 2-succinylbenzoate--COA 100.0 5.3E-65 1.8E-69 512.8 37.1 437 27-487 1-464 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 3.2E-65 1.1E-69 513.5 31.5 423 26-487 21-475 (505)
27 3ite_A SIDN siderophore synthe 100.0 9.9E-64 3.4E-68 510.4 35.7 440 24-488 17-510 (562)
28 2vsq_A Surfactin synthetase su 100.0 1.1E-62 3.8E-67 545.3 44.1 430 26-487 463-927 (1304)
29 3kxw_A Saframycin MX1 syntheta 100.0 3.2E-64 1.1E-68 517.7 28.9 443 25-487 9-530 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 4.4E-62 1.5E-66 500.7 38.8 435 26-486 20-526 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 7.3E-57 2.5E-61 451.7 28.5 377 24-420 21-480 (480)
32 3qov_A Phenylacetate-coenzyme 100.0 3.5E-44 1.2E-48 354.5 25.0 293 187-487 81-402 (436)
33 4gs5_A Acyl-COA synthetase (AM 100.0 2E-44 6.9E-49 345.2 16.0 274 190-487 36-321 (358)
34 2y27_A Phenylacetate-coenzyme 100.0 4.5E-43 1.5E-47 346.7 21.4 294 187-487 86-404 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 9.9E-43 3.4E-47 344.8 22.3 294 187-487 88-408 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 4E-32 1.4E-36 262.1 15.0 233 188-430 88-368 (369)
37 4eql_A 4-substituted benzoates 98.9 7E-09 2.4E-13 102.7 13.8 153 308-468 296-481 (581)
38 4b2g_A GH3-1 auxin conjugating 98.9 2.5E-08 8.7E-13 98.8 14.4 165 308-480 301-508 (609)
39 4epl_A Jasmonic acid-amido syn 98.7 1.2E-07 4E-12 93.7 14.6 163 308-480 301-498 (581)
40 3gxs_A Phenylacetate-coenzyme 98.7 1.9E-08 6.7E-13 77.4 6.5 66 419-485 1-73 (109)
41 3lax_A Phenylacetate-coenzyme 98.7 3.9E-08 1.3E-12 75.8 7.6 57 419-475 1-60 (109)
42 2y27_A Phenylacetate-coenzyme 91.7 1.1 3.6E-05 43.2 10.8 88 53-141 108-197 (437)
43 3qov_A Phenylacetate-coenzyme 91.2 1 3.4E-05 43.3 10.1 88 53-141 104-193 (436)
44 2y4o_A Phenylacetate-coenzyme 90.4 1.5 5.2E-05 42.2 10.5 87 53-140 110-198 (443)
45 3hgu_A EHPF; phenazine, antibi 79.8 5 0.00017 37.3 8.0 87 53-141 109-220 (369)
46 3ipl_A 2-succinylbenzoate--COA 78.5 22 0.00075 34.5 12.5 99 39-141 160-266 (501)
47 2d1s_A Luciferase, luciferin 4 77.9 10 0.00035 37.5 10.0 98 42-141 192-298 (548)
48 1mdb_A 2,3-dihydroxybenzoate-A 77.7 24 0.00082 34.7 12.6 98 39-140 179-286 (539)
49 3o83_A Peptide arylation enzym 77.1 22 0.00075 35.0 12.1 98 40-141 189-296 (544)
50 3r44_A Fatty acyl COA syntheta 73.6 26 0.00089 34.2 11.5 97 40-141 168-273 (517)
51 2cvi_A 75AA long hypothetical 69.5 8.4 0.00029 26.7 5.1 45 433-487 17-61 (83)
52 3rix_A Luciferase, luciferin 4 69.2 21 0.00072 35.2 9.8 88 53-141 208-296 (550)
53 3fce_A D-alanine--poly(phospho 69.0 21 0.00073 34.7 9.7 98 40-140 142-249 (512)
54 3e7w_A D-alanine--poly(phospho 66.0 27 0.00091 34.0 9.7 98 40-140 141-248 (511)
55 4gs5_A Acyl-COA synthetase (AM 65.6 28 0.00094 32.1 9.2 96 39-140 34-137 (358)
56 1t5h_X 4-chlorobenzoyl COA lig 65.1 30 0.001 33.5 9.9 99 39-141 150-259 (504)
57 3c5e_A Acyl-coenzyme A synthet 64.1 48 0.0016 32.8 11.2 99 40-141 204-312 (570)
58 3rg2_A Enterobactin synthase c 63.8 78 0.0027 31.6 12.9 97 40-140 182-288 (617)
59 3kxw_A Saframycin MX1 syntheta 63.2 30 0.001 34.3 9.7 99 39-140 164-274 (590)
60 2zbc_A 83AA long hypothetical 61.7 14 0.00048 25.4 5.0 44 433-486 17-60 (83)
61 1v25_A Long-chain-fatty-acid-C 60.3 38 0.0013 33.2 9.7 88 53-141 194-282 (541)
62 3g7s_A Long-chain-fatty-acid-- 59.7 41 0.0014 33.0 9.8 96 42-141 180-283 (549)
63 3tbh_A O-acetyl serine sulfhyd 58.7 36 0.0012 31.1 8.5 93 41-135 34-127 (334)
64 3ni2_A 4-coumarate:COA ligase; 58.6 58 0.002 31.8 10.7 100 188-296 34-135 (536)
65 3t5a_A Long-chain-fatty-acid-- 57.2 52 0.0018 31.5 9.9 105 189-299 37-149 (480)
66 3ivr_A Putative long-chain-fat 56.4 86 0.0029 30.3 11.4 99 39-141 157-263 (509)
67 3vc3_A Beta-cyanoalnine syntha 55.1 43 0.0015 30.7 8.4 94 41-135 49-142 (344)
68 3nyq_A Malonyl-COA ligase; A/B 54.3 96 0.0033 30.0 11.3 97 40-141 153-258 (505)
69 2djw_A Probable transcriptiona 53.9 12 0.00041 26.5 3.5 46 431-486 14-60 (92)
70 1amu_A GRSA, gramicidin synthe 52.0 44 0.0015 33.0 8.5 98 40-140 180-287 (563)
71 2v7b_A Benzoate-coenzyme A lig 51.8 40 0.0014 32.9 8.1 99 40-141 181-289 (529)
72 3ezx_A MMCP 1, monomethylamine 49.9 1.1E+02 0.0037 25.7 9.5 82 244-329 104-195 (215)
73 4gr5_A Non-ribosomal peptide s 48.6 66 0.0022 31.7 9.2 99 39-141 211-318 (570)
74 1ry2_A Acetyl-coenzyme A synth 47.8 1.3E+02 0.0045 30.3 11.4 98 189-291 95-195 (663)
75 3l8c_A D-alanine--poly(phospho 43.9 1.6E+02 0.0053 28.5 11.1 100 40-140 143-252 (521)
76 4dg8_A PA1221; ANL superfamily 43.4 89 0.0031 31.2 9.3 98 40-141 162-268 (620)
77 1pg4_A Acetyl-COA synthetase; 43.2 1E+02 0.0036 31.0 9.8 87 53-141 274-365 (652)
78 3gqw_A Fatty acid AMP ligase; 38.2 92 0.0032 30.6 8.5 99 40-140 174-284 (576)
79 4aec_A Cysteine synthase, mito 37.1 1.2E+02 0.0041 28.7 8.5 91 42-134 138-229 (430)
80 1z7w_A Cysteine synthase; tran 36.4 1.3E+02 0.0045 27.0 8.5 92 42-135 30-122 (322)
81 4fuq_A Malonyl COA synthetase; 36.1 1.4E+02 0.0049 28.7 9.3 81 210-292 28-110 (503)
82 2q3b_A Cysteine synthase A; py 35.9 1.6E+02 0.0053 26.3 8.9 91 42-135 31-122 (313)
83 4h1h_A LMO1638 protein; MCCF-l 35.8 1.3E+02 0.0046 27.1 8.4 60 75-134 8-86 (327)
84 3tsy_A Fusion protein 4-coumar 35.4 1.2E+02 0.0041 32.3 9.3 101 39-140 222-332 (979)
85 3dxs_X Copper-transporting ATP 34.5 93 0.0032 20.1 6.0 52 425-484 6-62 (74)
86 3etc_A AMP-binding protein; ad 34.2 1.2E+02 0.0042 29.9 8.6 99 40-141 223-331 (580)
87 3ju7_A Putative PLP-dependent 34.2 1.1E+02 0.0036 28.3 7.7 60 70-132 69-135 (377)
88 4a4j_A Pacszia, cation-transpo 33.9 91 0.0031 19.8 5.7 51 425-484 6-61 (69)
89 2jtq_A Phage shock protein E; 33.8 76 0.0026 21.6 5.1 44 54-104 23-66 (85)
90 3ite_A SIDN siderophore synthe 33.5 1.4E+02 0.0046 29.3 8.8 87 53-139 193-285 (562)
91 2pqm_A Cysteine synthase; OASS 31.8 1.8E+02 0.0061 26.4 8.6 91 42-135 42-133 (343)
92 2egu_A Cysteine synthase; O-ac 31.8 1.7E+02 0.0057 26.1 8.3 92 41-135 28-120 (308)
93 3tla_A MCCF; serine protease, 30.8 1.7E+02 0.0059 26.9 8.2 62 74-135 38-118 (371)
94 3sr3_A Microcin immunity prote 30.6 1.6E+02 0.0055 26.7 8.0 61 75-135 9-88 (336)
95 4e5s_A MCCFLIKE protein (BA_56 30.4 1.9E+02 0.0064 26.2 8.4 60 75-134 8-86 (331)
96 4eez_A Alcohol dehydrogenase 1 30.3 1.9E+02 0.0066 26.0 8.7 77 54-133 136-215 (348)
97 1ve1_A O-acetylserine sulfhydr 29.7 2.5E+02 0.0085 24.8 9.1 91 42-135 24-117 (304)
98 1o69_A Aminotransferase; struc 29.5 2.3E+02 0.0078 26.0 9.2 59 73-134 66-130 (394)
99 3tqh_A Quinone oxidoreductase; 28.3 1.5E+02 0.005 26.5 7.4 75 54-133 125-203 (321)
100 2cg4_A Regulatory protein ASNC 27.6 1.5E+02 0.0051 22.9 6.5 45 433-487 84-128 (152)
101 3dwg_A Cysteine synthase B; su 27.4 2.1E+02 0.0072 25.7 8.2 90 43-135 38-128 (325)
102 1zsy_A Mitochondrial 2-enoyl t 27.0 2E+02 0.0068 26.1 8.2 79 54-133 139-223 (357)
103 1ofu_X SULA, hypothetical prot 26.4 2E+02 0.0067 21.5 6.4 52 68-119 47-100 (119)
104 3ijw_A Aminoglycoside N3-acety 25.5 51 0.0018 28.8 3.5 25 65-89 18-42 (268)
105 1oft_A SULA, hypothetical prot 24.1 2.3E+02 0.0079 22.5 6.7 33 71-103 92-124 (161)
106 3ri6_A O-acetylhomoserine sulf 24.1 2.5E+02 0.0087 26.3 8.4 52 84-135 101-155 (430)
107 1eg5_A Aminotransferase; PLP-d 24.0 2.5E+02 0.0085 25.3 8.3 56 77-133 87-146 (384)
108 3dzz_A Putative pyridoxal 5'-p 23.7 2.3E+02 0.0078 25.7 8.1 56 76-134 106-168 (391)
109 2nyg_A YOKD protein; PFAM02522 23.6 58 0.002 28.6 3.5 24 66-89 17-40 (273)
110 3sma_A FRBF; N-acetyl transfer 23.6 59 0.002 28.7 3.5 31 52-89 19-49 (286)
111 1y7l_A O-acetylserine sulfhydr 23.1 3E+02 0.01 24.4 8.4 92 41-135 25-117 (316)
112 2jwk_A Protein TOLR; periplasm 23.1 1.1E+02 0.0036 20.2 4.1 35 29-65 32-66 (74)
113 3l6b_A Serine racemase; pyrido 22.6 1.3E+02 0.0046 27.3 6.0 57 79-136 76-132 (346)
114 1h2b_A Alcohol dehydrogenase; 22.4 2.4E+02 0.0082 25.6 7.7 62 69-133 175-238 (359)
115 2vsq_A Surfactin synthetase su 22.3 2.1E+02 0.0071 31.7 8.4 98 40-141 605-712 (1304)
116 1mdo_A ARNB aminotransferase; 21.9 2.4E+02 0.0081 25.7 7.7 57 73-133 73-134 (393)
117 3s2e_A Zinc-containing alcohol 21.6 2.4E+02 0.0083 25.2 7.6 77 53-133 138-217 (340)
118 2raq_A Conserved protein MTH88 21.4 2.3E+02 0.0077 20.2 5.6 59 423-484 12-71 (97)
119 1y80_A Predicted cobalamin bin 21.3 2.8E+02 0.0096 22.8 7.3 57 79-135 88-148 (210)
120 2fsx_A RV0390, COG0607: rhodan 21.2 76 0.0026 24.6 3.5 40 65-104 66-105 (148)
121 1urh_A 3-mercaptopyruvate sulf 20.7 1.6E+02 0.0056 25.6 6.0 40 65-104 72-112 (280)
122 3a2b_A Serine palmitoyltransfe 20.6 4.8E+02 0.016 23.6 9.6 55 76-134 124-181 (398)
123 3two_A Mannitol dehydrogenase; 20.2 3E+02 0.01 24.7 7.9 74 54-131 149-225 (348)
124 2e7j_A SEP-tRNA:Cys-tRNA synth 20.1 4.1E+02 0.014 23.6 9.0 56 76-134 90-155 (371)
125 2cyy_A Putative HTH-type trans 20.1 1.4E+02 0.0046 23.2 4.8 45 431-486 79-124 (151)
126 1e0c_A Rhodanese, sulfurtransf 20.1 1.5E+02 0.005 25.7 5.5 52 54-105 192-249 (271)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.2e-72 Score=572.45 Aligned_cols=466 Identities=39% Similarity=0.638 Sum_probs=402.4
Q ss_pred CcceeeecCCCCCCCCCCCCCCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Q 043601 7 GRDGIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFA 86 (488)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~ 86 (488)
+.+.++++..|+...|.+ +|+.++|.++++++|+++|+++..+++++||+||.++++++|++|++.|+++||+|++++
T Consensus 4 ~~~~i~~~~~~~~~~p~~--~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 81 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFL 81 (536)
T ss_dssp -CCCCBCCSSCCCCCCSS--CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred ccceEEecCCCCCCCCCC--CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 345677777787777665 899999999999999999999876678999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc----CCCeEEEcccCcccCCCCc
Q 043601 87 PNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF----NIPAVLLGSNHIVSPRGLR 162 (488)
Q Consensus 87 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 162 (488)
+|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+... ....+.++.
T Consensus 82 ~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------- 151 (536)
T 3ni2_A 82 PSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDS---------- 151 (536)
T ss_dssp CSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSC----------
T ss_pred CCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecC----------
Confidence 999999999999999999999999999999999999999999999998766655432 222222211
Q ss_pred CCCCccchHHHHhhcCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhh--hhhhcCCCCcEEEEe
Q 043601 163 SSSNIVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAM--DQELAGALDYVTLCV 240 (488)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~--~~~~~~~~~~~~~~~ 240 (488)
.......++++..... ...+.....++++++|+|||||||.||+|++||.++.+....... ...+...+++++++.
T Consensus 152 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~ 229 (536)
T 3ni2_A 152 APDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCV 229 (536)
T ss_dssp CCTTCEETHHHHTSCG--GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEEC
T ss_pred CCCCccCHHHHhhccc--cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEe
Confidence 1123345566554332 223344567899999999999999999999999999876322111 113346788999999
Q ss_pred cchhhHHhHHHHHHHHhhCCceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCC
Q 043601 241 LPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAP 320 (488)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~ 320 (488)
+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. ......++++||.+++|||+
T Consensus 230 ~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~i~~gGe~ 308 (536)
T 3ni2_A 230 LPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS-PDLDKHDLSSLRMIKSGGAP 308 (536)
T ss_dssp SCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTC-SCGGGSCCTTCCEEEEESSC
T ss_pred cChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhC-cccccCCCccceEEEECCCC
Confidence 99999999877788999999999999999999999999999999999999999999987 55566789999999999999
Q ss_pred CcHHHHHHHHhhCCCCeEEeccCcccccccccccC---CCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEe
Q 043601 321 LRKELVEECSKNLPTVTVFQGYGMTETCGVVTVEN---PLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVR 397 (488)
Q Consensus 321 l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~ 397 (488)
+++++.+.|.+.|+++++++.||+||++.+++.+. ........+++|+|+++++++|+|++++++++.|+.|||+|+
T Consensus 309 l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~ 388 (536)
T 3ni2_A 309 LGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIR 388 (536)
T ss_dssp CCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEE
T ss_pred CCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEe
Confidence 99999999999997799999999999987655432 222345678899999999999999888999999999999999
Q ss_pred cC---------------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeec
Q 043601 398 GP---------------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFP 453 (488)
Q Consensus 398 g~---------------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~ 453 (488)
|+ ||+|||+|++++||++++.||+||+||++|++| +||+++.+||+|.+++|++.+
T Consensus 389 g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~ 468 (536)
T 3ni2_A 389 GDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLK 468 (536)
T ss_dssp STTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred CcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeee
Confidence 75 689999999999999999999999999999999 999999999999999999999
Q ss_pred CCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhcC
Q 043601 454 DPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQ 487 (488)
Q Consensus 454 ~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l~ 487 (488)
++..++.++++|+..++...+.++|+++++++|+
T Consensus 469 ~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~ 502 (536)
T 3ni2_A 469 DEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVI 502 (536)
T ss_dssp ETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSC
T ss_pred cCCCCceeEEEEEecCCCCCCHHHHHHHHHHhcc
Confidence 9889999999999999888999999999999986
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.7e-70 Score=555.95 Aligned_cols=469 Identities=30% Similarity=0.453 Sum_probs=390.0
Q ss_pred CCCcCCcceeeecCCCCCCCCCCCCCCHHH-HHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCC
Q 043601 2 EKSGYGRDGIYRSLRPALVLPQDPNLSMVH-FLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHD 80 (488)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~ 80 (488)
++-.-...-.+++..|+...|.. +|+.+ ++.++++++ +++|+++...++++||+||.++++++|+.|++.|+++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~p~~--~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd 78 (548)
T 2d1s_A 2 ENMENDENIVVGPKPFYPIEEGS--AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDG 78 (548)
T ss_dssp -----CTTSEECCCCSSCCCSSC--HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTC
T ss_pred CCCCCCcceEecCCCCCCCCCCc--CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 33333334456666665555543 68999 899999999 999999854468999999999999999999999999999
Q ss_pred EEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc----C-CCeEEEcccCc
Q 043601 81 VVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF----N-IPAVLLGSNHI 155 (488)
Q Consensus 81 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~~~~~~~~~ 155 (488)
+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+... . ...++.....
T Consensus 79 ~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (548)
T 2d1s_A 79 RIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSK- 157 (548)
T ss_dssp EEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCS-
T ss_pred EEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCc-
Confidence 999999999999999999999999999999999999999999999999999998876654432 1 1222221110
Q ss_pred ccCCCCcCCCCccchHHHHhhcCCCCCCCCCCCC-----C-CCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhh-
Q 043601 156 VSPRGLRSSSNIVYFDELIELSGNASNFPDVSVK-----Q-TDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQE- 228 (488)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~- 228 (488)
....+...++++...... ...+..... + +++++|+|||||||.||+|++||+++.+... .....
T Consensus 158 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~--~~~~~~ 228 (548)
T 2d1s_A 158 ------VDYRGYQCLDTFIKRNTP-PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFS--HARDPI 228 (548)
T ss_dssp ------SCBTTBCBHHHHHHHTSC-TTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHH--HHTCTT
T ss_pred ------ccccccccHHHHHhcCcc-ccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHH--Hhhchh
Confidence 000123346666554321 101111222 3 8999999999999999999999999987632 23333
Q ss_pred --hcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCC
Q 043601 229 --LAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKF 306 (488)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~ 306 (488)
+...+++++++.+|++|.+++...++.++ .|+++++.+.+++..+++.++++++|+++++|+++..+.+. ......
T Consensus 229 ~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~ 306 (548)
T 2d1s_A 229 YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS-ELLNKY 306 (548)
T ss_dssp TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC-SCGGGS
T ss_pred hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC-cccccc
Confidence 45678899999999999999855577777 99999999989999999999999999999999999999987 444556
Q ss_pred CCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEeccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCC
Q 043601 307 DLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPL 386 (488)
Q Consensus 307 ~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~ 386 (488)
++++||.+++||+++++++.++|.+.|+++.+++.||+||++..++..... ....+++|+|+|+++++|+|+++++++
T Consensus 307 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~ 384 (548)
T 2d1s_A 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSL 384 (548)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBC
T ss_pred cccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccC
Confidence 789999999999999999999999999778999999999998776654322 356789999999999999998889999
Q ss_pred CCCCcceEEEecC---------------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCC
Q 043601 387 PPNQVGELWVRGP---------------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHP 442 (488)
Q Consensus 387 ~~g~~Gel~v~g~---------------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~ 442 (488)
+.|+.|||+++|+ ||+|||+|++++||.+++.||+||+||++|++| +||+++.+||
T Consensus 385 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p 464 (548)
T 2d1s_A 385 GPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHP 464 (548)
T ss_dssp CTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTST
T ss_pred CCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCC
Confidence 9999999999985 689999999999999999999999999999999 9999999999
Q ss_pred CeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhcC
Q 043601 443 EILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQ 487 (488)
Q Consensus 443 ~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l~ 487 (488)
+|.+++|++.+++..++.++++|+++++...+.++|+++++++|+
T Consensus 465 ~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~ 509 (548)
T 2d1s_A 465 SIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVS 509 (548)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSC
T ss_pred CccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhcc
Confidence 999999999999888899999999988877899999999999886
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=9.8e-70 Score=552.62 Aligned_cols=446 Identities=31% Similarity=0.506 Sum_probs=368.8
Q ss_pred CCCCCHHHHHhhccccCCCceEEEeCCCC------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHH
Q 043601 24 DPNLSMVHFLFRNSASYGSKSALIDADSG------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLL 97 (488)
Q Consensus 24 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~l 97 (488)
.|++|+.++|.++++++|+++|+++.+.+ +++||+||+++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 16 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 95 (549)
T 3g7s_A 16 YPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIY 95 (549)
T ss_dssp CCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 34589999999999999999999987421 889999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc----CCCeEEEcccCcccCCCCcCCCCccchHHH
Q 043601 98 GVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF----NIPAVLLGSNHIVSPRGLRSSSNIVYFDEL 173 (488)
Q Consensus 98 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (488)
||+++|++++|++|.++.+++.+++++++++++|+++.....+... ....+++.. .....++++
T Consensus 96 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 163 (549)
T 3g7s_A 96 ALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVG------------GEVNSLSEV 163 (549)
T ss_dssp HHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEET------------CSSSCHHHH
T ss_pred HHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeC------------CCCcCHHHH
Confidence 9999999999999999999999999999999999998876655432 222232221 123356666
Q ss_pred HhhcCCCCCCCCCCCCC-CCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHH
Q 043601 174 IELSGNASNFPDVSVKQ-TDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFV 252 (488)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (488)
..... .........+ +++++|+|||||||.||+|++||.++.+. .......+...++++++..+|++|..++ ..
T Consensus 164 ~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~d~~~~~~p~~~~~~~-~~ 238 (549)
T 3g7s_A 164 MDSGS--EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAAN--ALQLAVATGLSHMDTIVGCMPMFHSAEF-GL 238 (549)
T ss_dssp HHHSC--SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHH--HHHHHHHHCCCTTCEEECCSCTTSHHHH-HH
T ss_pred HhcCc--cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHH--HHHHHHHcCCCCCCEEEEeCcHHHHHHH-HH
Confidence 65443 2222233334 89999999999999999999999999987 3345566778899999999999999998 44
Q ss_pred HHHHhhCCceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCC--CCCCCccEEEEccCCCcHHHHHHHH
Q 043601 253 VYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKK--FDLSSLKGIGSGAAPLRKELVEECS 330 (488)
Q Consensus 253 ~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~--~~l~~lr~v~~~G~~l~~~~~~~~~ 330 (488)
++.++..|+++++.+.+++..+++.++++++|+++++|+++..+++. ..... .+++++|.+++||+++++++.+++.
T Consensus 239 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~ 317 (549)
T 3g7s_A 239 VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNT-LESSNKTYDWSYLKVFATGAWPVAPALVEKLL 317 (549)
T ss_dssp HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHH-HHHSCCCCCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhh-hhhhcccCCccceeEEEeCCccCCHHHHHHHH
Confidence 78889999999999999999999999999999999999999999876 32222 6789999999999999999999999
Q ss_pred hh----CC--CCeEEeccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC-----
Q 043601 331 KN----LP--TVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP----- 399 (488)
Q Consensus 331 ~~----~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~----- 399 (488)
+. ++ ++++++.||+||++.+++...... .....++|+|+++++++|+|++++++++.|+.|||+|+|+
T Consensus 318 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G 396 (549)
T 3g7s_A 318 KLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG 396 (549)
T ss_dssp HHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSE
T ss_pred HHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhh
Confidence 87 54 389999999999998777654432 3567789999999999999988999999999999999985
Q ss_pred --------------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCC
Q 043601 400 --------------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPE 456 (488)
Q Consensus 400 --------------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~ 456 (488)
||+|||+|++++||.+++.||+||+||++|++| +||++|.++|+|.+++|++.+++.
T Consensus 397 Y~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 476 (549)
T 3g7s_A 397 YWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEE 476 (549)
T ss_dssp ETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC--
T ss_pred hCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccc
Confidence 689999999999999999999999999999999 999999999999999999999988
Q ss_pred CCceEEEEEEeCCC--CCCCHHHHHHHHHhhcCC
Q 043601 457 AGEVPIAYVVRSPN--SSLTKEDVQKFVANDSQL 488 (488)
Q Consensus 457 ~~~~~~~~v~~~~~--~~~~~~~i~~~~~~~l~~ 488 (488)
.++.++++|+++++ ...+.++|+++|+++|+.
T Consensus 477 ~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~ 510 (549)
T 3g7s_A 477 AGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISG 510 (549)
T ss_dssp ----CEEEEEECSTTTTSCCHHHHHHHHHTTCC-
T ss_pred cCceEEEEEEECCCccCcCCHHHHHHHHHHhccC
Confidence 99999999999887 678899999999999873
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.1e-70 Score=556.39 Aligned_cols=462 Identities=31% Similarity=0.482 Sum_probs=321.8
Q ss_pred eeeecCCCCCCCCCCCCCCHHHHHhhccccCCCceEEE---eCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Q 043601 10 GIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALI---DADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFA 86 (488)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~ 86 (488)
.+|....|..+ .++.|+.++|.++++++|+++|++ +...++++||+||+++++++|++|+++|+++||+|++++
T Consensus 6 ~~~~~~~~~~~---~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 82 (550)
T 3rix_A 6 NIKKGPAPFYP---LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCS 82 (550)
T ss_dssp GSEECCCCSSC---CCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred ceeeCCCCCCC---cccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEc
Confidence 45555555544 345799999999999999999875 544468999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc-----CCCeEEEcccCcccCCCC
Q 043601 87 PNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF-----NIPAVLLGSNHIVSPRGL 161 (488)
Q Consensus 87 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 161 (488)
+|++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+... ....+++....
T Consensus 83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 155 (550)
T 3rix_A 83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK------- 155 (550)
T ss_dssp SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS-------
T ss_pred CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC-------
Confidence 999999999999999999999999999999999999999999999998876655432 12233332211
Q ss_pred cCCCCccchHHHHhhcCCCC----C-CCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhh---hcCCC
Q 043601 162 RSSSNIVYFDELIELSGNAS----N-FPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQE---LAGAL 233 (488)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~---~~~~~ 233 (488)
.......++.++........ . .+.....++++++|+|||||||.||+|++||.++...... .... ....+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~--~~~~~~~~~~~~ 233 (550)
T 3rix_A 156 TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH--ARDPIFGNQIIP 233 (550)
T ss_dssp SCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHH--HTCTTTSCCCCT
T ss_pred ccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHH--hhhhhccccCCC
Confidence 11223445666654433211 1 1112234578999999999999999999999999876322 2222 34678
Q ss_pred CcEEEEecchhhHHhHHHHHHHHhhCCceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccE
Q 043601 234 DYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKG 313 (488)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~ 313 (488)
++++++.+|++|.+++ ...+.++..|+++++.+.+++..+++.++++++|+++++|+++..+++. ......++++||.
T Consensus 234 ~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~ 311 (550)
T 3rix_A 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLIDKYDLSNLHE 311 (550)
T ss_dssp TCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC-CGGGGSCCTTCCE
T ss_pred CcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC-ccccccCcccccE
Confidence 8999999999999998 6778889999999999999999999999999999999999999999987 5556678999999
Q ss_pred EEEccCCCcHHHHHHHHhhCCCCeEEeccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcce
Q 043601 314 IGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGE 393 (488)
Q Consensus 314 v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Ge 393 (488)
+++||+++++++.++|.+.|+...+++.||+||+++.++..... ....+++|+|+++++++|+|++++++++.|+.||
T Consensus 312 i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GE 389 (550)
T 3rix_A 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 389 (550)
T ss_dssp EEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEE
T ss_pred EEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeE
Confidence 99999999999999999999845699999999999877765543 4567899999999999999988899999999999
Q ss_pred EEEecC---------------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEE
Q 043601 394 LWVRGP---------------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVV 449 (488)
Q Consensus 394 l~v~g~---------------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v 449 (488)
|+|+|+ ||+|||+|++++||++++.||+||+||++|++| +||++|.+||+|.+++|
T Consensus 390 l~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 469 (550)
T 3rix_A 390 LCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGV 469 (550)
T ss_dssp EEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------------------------------
T ss_pred EEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 999985 689999999999999999999999999999999 99999999999999999
Q ss_pred EeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhcC
Q 043601 450 IPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQ 487 (488)
Q Consensus 450 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l~ 487 (488)
++.+++..++.++++|+++++...+.++++++++++|+
T Consensus 470 v~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~ 507 (550)
T 3rix_A 470 AGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 507 (550)
T ss_dssp --------------------------------------
T ss_pred EEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcc
Confidence 99999999999999999998888888999999998875
No 5
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5.3e-69 Score=542.95 Aligned_cols=437 Identities=23% Similarity=0.371 Sum_probs=374.2
Q ss_pred CCCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCe
Q 043601 26 NLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGI 105 (488)
Q Consensus 26 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (488)
..|+.++|.++++.+|+++|+++.+.+.++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 94 (517)
T 3r44_A 15 MKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAV 94 (517)
T ss_dssp GGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred ccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence 48999999999999999999998743459999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCC-----C-eEEEcccCcccCCCCcCCCCccchHHHHhhcCC
Q 043601 106 ATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNI-----P-AVLLGSNHIVSPRGLRSSSNIVYFDELIELSGN 179 (488)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (488)
++|++|.++.+++.+++++++++++|++......+..... . .+.. .....+.+......
T Consensus 95 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~- 159 (517)
T 3r44_A 95 AVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW--------------IGADSLAERLRSAA- 159 (517)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEE--------------EEHHHHHHHHHHCC-
T ss_pred EEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEc--------------cCcccHHHHhhccC-
Confidence 9999999999999999999999999999887665543210 0 0000 00112334443332
Q ss_pred CCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhC
Q 043601 180 ASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQK 259 (488)
Q Consensus 180 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (488)
...+.....++++++|+|||||||.||+|++||.++.+. .......+...+++++++.+|++|..++...++..+ .
T Consensus 160 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~ 235 (517)
T 3r44_A 160 -ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSA--ASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-R 235 (517)
T ss_dssp -CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHH--HHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-H
T ss_pred -cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHH--HHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-c
Confidence 233444567899999999999999999999999999887 333555667889999999999999999854455545 9
Q ss_pred CceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEE
Q 043601 260 GNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVF 339 (488)
Q Consensus 260 G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~ 339 (488)
|+++++.+.+++..+++.++++++|++.++|+++..+.+. ......++++||.+++|||++++++.+.|.+. +++++
T Consensus 236 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHS-HHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhC-cccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 9999999999999999999999999999999999999876 44455678999999999999999999999987 59999
Q ss_pred eccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC--------------------
Q 043601 340 QGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP-------------------- 399 (488)
Q Consensus 340 ~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~-------------------- 399 (488)
+.||+||+++.++...........+++|+|.+++.++++| +++.+++.| .|||+|+|+
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g 390 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNG 390 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETT
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCC
Confidence 9999999987776655444356778999999999999999 688888888 899999996
Q ss_pred CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHH
Q 043601 400 ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKE 476 (488)
Q Consensus 400 ~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 476 (488)
||+|||+|++++||.+++.||+||+||++|++| +||+++.++|+|.+++|++.+++..++.++++| ..++...+.+
T Consensus 391 ~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~ 469 (517)
T 3r44_A 391 WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQ 469 (517)
T ss_dssp EEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHH
T ss_pred CEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHH
Confidence 588999999999999999999999999999999 999999999999999999999988888888888 5666778999
Q ss_pred HHHHHHHhhcC
Q 043601 477 DVQKFVANDSQ 487 (488)
Q Consensus 477 ~i~~~~~~~l~ 487 (488)
+|+++++++|+
T Consensus 470 ~l~~~l~~~L~ 480 (517)
T 3r44_A 470 QIVEYCGTRLA 480 (517)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHhCC
Confidence 99999999986
No 6
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4.3e-68 Score=535.21 Aligned_cols=433 Identities=22% Similarity=0.322 Sum_probs=365.4
Q ss_pred CCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeE
Q 043601 27 LSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106 (488)
Q Consensus 27 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (488)
+|+.++|.++++++|+++|+.+...++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999986556899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHhhcCCeEEEE--ccccHHHH-hccCCCeEEEcccCcccCCCCcCCCCccchHHHHhhcC---CC
Q 043601 107 TTANPVYTVSELSKQVKDSSPKLVVT--VPELWERV-KDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSG---NA 180 (488)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 180 (488)
+|++|.++.+++.+++++++++++|+ +.+....+ ....... .+ .++++..... ..
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~ 142 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR-II------------------FLGDLVRDGEPYSYG 142 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCE-EE------------------EGGGTEETTEECCCS
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccce-eE------------------EecchhhcCcccccC
Confidence 99999999999999999999999999 76655444 2221111 11 1222211100 00
Q ss_pred CCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcC--CCCcEEEEecchhhHHhHHHHHHHHhh
Q 043601 181 SNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAG--ALDYVTLCVLPMFHVFGLSFVVYAQLQ 258 (488)
Q Consensus 181 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (488)
.........++++++|+|||||||.||+|++||+++.+... .....+.. .+++++++.+|++|..++...++.++.
T Consensus 143 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~--~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~ 220 (504)
T 1t5h_X 143 PPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL--FMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220 (504)
T ss_dssp CCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHH--HHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHH
T ss_pred CccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHH--HHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHH
Confidence 11112345678999999999999999999999999987733 23344455 788999999999999998667889999
Q ss_pred CCceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCc-cCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCe
Q 043601 259 KGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSL-VKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVT 337 (488)
Q Consensus 259 ~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~-~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~ 337 (488)
.|+++++.+.+++..+++.++++++|+++++|+++..+++.... ....++++||.+++||+++++++.++|.+.++ ..
T Consensus 221 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~ 299 (504)
T 1t5h_X 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GE 299 (504)
T ss_dssp TTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC-SE
T ss_pred cCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC-cc
Confidence 99999999999999999999999999999999999999886212 24457899999999999999999999999997 89
Q ss_pred EEeccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCC---CCCCCCCcceEEEe-cC--------------
Q 043601 338 VFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTL---KPLPPNQVGELWVR-GP-------------- 399 (488)
Q Consensus 338 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~---~~~~~g~~Gel~v~-g~-------------- 399 (488)
+++.||+||++. ..... ....+++|.|.++++++++|. ++ ++++.|+.|||+++ |+
T Consensus 300 ~~~~YG~TE~~~-~~~~~----~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~ 373 (504)
T 1t5h_X 300 KVNIYGTTEAMN-SLYMR----QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATA 373 (504)
T ss_dssp EEEEEEETTTEE-EEEEE----SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHH
T ss_pred eeeeeccccccc-ccccc----CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeeceecCCchhhh
Confidence 999999999942 22211 245678999999999999994 55 89999999999999 53
Q ss_pred ------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCC
Q 043601 400 ------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN 470 (488)
Q Consensus 400 ------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 470 (488)
||+|||+|++++||++++.||+||+||++|++| +||++|.+||+|.+++|++.+++..++.++|+|+++++
T Consensus 374 ~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~ 453 (504)
T 1t5h_X 374 EKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG 453 (504)
T ss_dssp HHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT
T ss_pred hhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC
Confidence 588999999999999999999999999999999 99999999999999999999998899999999999988
Q ss_pred CCCCHHHHHHHHHh-hcC
Q 043601 471 SSLTKEDVQKFVAN-DSQ 487 (488)
Q Consensus 471 ~~~~~~~i~~~~~~-~l~ 487 (488)
...+.+++++++++ +|+
T Consensus 454 ~~~~~~~l~~~~~~~~L~ 471 (504)
T 1t5h_X 454 ETLSADALDTFCRSSELA 471 (504)
T ss_dssp CCCCHHHHHHHHHTSSCC
T ss_pred cCcCHHHHHHHHhhccCc
Confidence 78899999999998 776
No 7
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=6e-69 Score=540.68 Aligned_cols=435 Identities=26% Similarity=0.386 Sum_probs=371.1
Q ss_pred HHHhhccccCCCceEEEe-CCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeec
Q 043601 31 HFLFRNSASYGSKSALID-ADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTA 109 (488)
Q Consensus 31 ~~l~~~a~~~p~~~a~~~-~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 109 (488)
++|.++++++|++.++.. ...++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 567888999999988863 2336899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc----CCCeEEEcccCcccCCCCcCCCCccchHHHHhhcCCCCCCCC
Q 043601 110 NPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF----NIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPD 185 (488)
Q Consensus 110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (488)
+|.++.+++.+++++++++++|++.+....+... ......+..+ ....+.+...... .....
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~--~~~~~ 149 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD------------GRGSLTDAAAGAS--EAFAT 149 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTT------------SCSHHHHHHHTSC--SCCCC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCC------------cccccchhhhcCC--CCcCc
Confidence 9999999999999999999999997654433221 1111111100 1111222222111 22333
Q ss_pred CCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEE
Q 043601 186 VSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVS 265 (488)
Q Consensus 186 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 265 (488)
....++++++|+|||||||.||+|++||.++.+. .......+...++++++..+|++|.+++....+.++..|+++++
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~ 227 (503)
T 4fuq_A 150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASN--SLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIF 227 (503)
T ss_dssp CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHH--HHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEE
T ss_pred CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHH--HHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEE
Confidence 4567899999999999999999999999999887 34455667788999999999999999976667888999999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEeccCcc
Q 043601 266 MRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMT 345 (488)
Q Consensus 266 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~t 345 (488)
.+.+++..+++.++ ++|+++++|+++..+++. .......++++|.+++||+++++++.+.|.+.++ .++++.||+|
T Consensus 228 ~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~T 303 (503)
T 4fuq_A 228 LPKFDPDKILDLMA--RATVLMGVPTFYTRLLQS-PRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMT 303 (503)
T ss_dssp CSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTC-TTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEECCEET
T ss_pred cCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhC-CCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccceEccc
Confidence 99999999999998 899999999999999987 5556667899999999999999999999999987 8999999999
Q ss_pred cccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC---------------------Ccccc
Q 043601 346 ETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP---------------------ILMPG 404 (488)
Q Consensus 346 E~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~---------------------~~~tG 404 (488)
|++...+... ......+++|+|+++++++|+|++++++++.|+.|||+|+|+ ||+||
T Consensus 304 E~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG 381 (503)
T 4fuq_A 304 ETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITG 381 (503)
T ss_dssp TTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEE
T ss_pred ccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcc
Confidence 9986644322 235667889999999999999988999999999999999985 68899
Q ss_pred ceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q 043601 405 DLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKF 481 (488)
Q Consensus 405 D~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~ 481 (488)
|+|++++||.+++.||+||+||++|++| +||++|.+||+|.+++|++.+++..++.++++|+.+++...+.++++++
T Consensus 382 Dl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~ 461 (503)
T 4fuq_A 382 DLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHG 461 (503)
T ss_dssp EEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred eeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999999989999999999999888999999999
Q ss_pred HHhhcC
Q 043601 482 VANDSQ 487 (488)
Q Consensus 482 ~~~~l~ 487 (488)
++++|+
T Consensus 462 l~~~L~ 467 (503)
T 4fuq_A 462 LDGQLA 467 (503)
T ss_dssp HBTTBC
T ss_pred HHhhcc
Confidence 999886
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.1e-67 Score=539.31 Aligned_cols=445 Identities=23% Similarity=0.328 Sum_probs=375.1
Q ss_pred CCCHH-HHHhhccccCCCceEEEeCC---CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHH
Q 043601 26 NLSMV-HFLFRNSASYGSKSALIDAD---SGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIA 101 (488)
Q Consensus 26 ~~~l~-~~l~~~a~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~ 101 (488)
.+|+. ++|.++|+++|+++|+++.+ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 47777 99999999999999998631 237899999999999999999999999999999999999999999999999
Q ss_pred cCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccH--HHHhcc-----C--CCeEEEcccCcccCCCCcCCCCccchHH
Q 043601 102 IGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELW--ERVKDF-----N--IPAVLLGSNHIVSPRGLRSSSNIVYFDE 172 (488)
Q Consensus 102 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (488)
+|++++|+++.++.+++.++++.++++++|++.+.. ..+... . ...+.+... ...+..++.+
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 204 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD---------VLEGWIDFRK 204 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS---------CCTTCEEHHH
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc---------cccccccHHH
Confidence 999999999999999999999999999999987643 322211 1 122222211 1234456666
Q ss_pred HHhhcCCCCCCCC--CCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHH
Q 043601 173 LIELSGNASNFPD--VSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLS 250 (488)
Q Consensus 173 ~~~~~~~~~~~~~--~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (488)
.+.........+. ....++++++|+|||||||.||+|.++|.++.... ..........++++++...|++|..+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (580)
T 3etc_A 205 ELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI--LTAKYWQNVEDDGLHYTVADSGWGKCVW 282 (580)
T ss_dssp HHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHH--HHHHTTSCCCTTCEEEECCCTTSTHHHH
T ss_pred HHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHH--HHHHHhhCCCCCceEEEeCChHHHHHHH
Confidence 6654432111111 35678999999999999999999999999887763 2233445677889999999999988876
Q ss_pred HHHHHHhhCCceEEEc--CCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHH
Q 043601 251 FVVYAQLQKGNCVVSM--RKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEE 328 (488)
Q Consensus 251 ~~~~~~l~~G~~~~~~--~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 328 (488)
..++.++..|+++++. ..+++..+++.++++++|+++++|+++..|++. .....++++||.+++|||++++++.++
T Consensus 283 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~--~~~~~~l~~lr~i~~gGe~l~~~~~~~ 360 (580)
T 3etc_A 283 GKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE--DLSHYNFSTLKYAVVAGEPLNPEVFNR 360 (580)
T ss_dssp HTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS--CC---CCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc--ccccCCCccceEEEEccCCCCHHHHHH
Confidence 6688899999999887 568999999999999999999999999999875 345567899999999999999999999
Q ss_pred HHhhCCCCeEEeccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEec-----C----
Q 043601 329 CSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRG-----P---- 399 (488)
Q Consensus 329 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g-----~---- 399 (488)
|.+.++ +++++.||+||++..++..... ..+.+++|+|+|+++++|+| +++++++.|+.|||+|+| +
T Consensus 361 ~~~~~g-~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~ 436 (580)
T 3etc_A 361 FLEFTG-IKLMEGFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFV 436 (580)
T ss_dssp HHHHHS-CCCEEEECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCC
T ss_pred HHHHhC-CeEecccccccccceeecCCCC--CCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeec
Confidence 999886 8999999999998766554433 45778999999999999999 579999999999999986 2
Q ss_pred ----------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCce
Q 043601 400 ----------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEV 460 (488)
Q Consensus 400 ----------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~ 460 (488)
||+|||+|++++||++++.||+||+||++|++| +||++|.++|+|.+++|++.+++..++.
T Consensus 437 gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~ 516 (580)
T 3etc_A 437 HYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQV 516 (580)
T ss_dssp EETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred cccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcE
Confidence 589999999999999999999999999999999 9999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCC---HHHHHHHHHhhcC
Q 043601 461 PIAYVVRSPNSSLT---KEDVQKFVANDSQ 487 (488)
Q Consensus 461 ~~~~v~~~~~~~~~---~~~i~~~~~~~l~ 487 (488)
++++|+++++...+ .++|+++++++|+
T Consensus 517 ~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~ 546 (580)
T 3etc_A 517 IKATIVLTKDYTPSDSLKNELQDHVKNVTA 546 (580)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHhhCC
Confidence 99999999876554 3689999999876
No 9
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.1e-67 Score=546.49 Aligned_cols=453 Identities=22% Similarity=0.325 Sum_probs=375.8
Q ss_pred CHHHHHhhccccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcC
Q 043601 28 SMVHFLFRNSASYGSKSALIDAD----SGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIG 103 (488)
Q Consensus 28 ~l~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (488)
++.++|.++++++|+++|+++.+ .++++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 35678889999999999998731 24789999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHH------------HH-hcc---CCCe-EEEcccCcccCCCCcCCCC
Q 043601 104 GIATTANPVYTVSELSKQVKDSSPKLVVTVPELWE------------RV-KDF---NIPA-VLLGSNHIVSPRGLRSSSN 166 (488)
Q Consensus 104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------------~~-~~~---~~~~-~~~~~~~~~~~~~~~~~~~ 166 (488)
++++|+++.++.+++.+++++++++++|+++.... .+ ... .... +.+...... .. .....
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~--~~-~~~~~ 233 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD--ID-WQEGR 233 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCC--CC-CCBTT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCc--cc-ccCCC
Confidence 99999999999999999999999999999876421 11 111 1222 222211000 00 00112
Q ss_pred ccchHHHHhhcCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhH
Q 043601 167 IVYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHV 246 (488)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (488)
...+++++.... .........++++++|+|||||||.||||++||.+++..... .....+...++|++++..|++|.
T Consensus 234 ~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~-~~~~~~~~~~~d~~l~~~~~~~~ 310 (652)
T 1pg4_A 234 DLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT-TFKYVFDYHPGDIYWCTADVGWV 310 (652)
T ss_dssp EEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHH-HHHHHTTCCTTCEEEECSCTTSH
T ss_pred ceeHHHHHhhcC--CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHH-HHHHhcCCCCCCEEEEccCCeee
Confidence 234666665332 223334567899999999999999999999999998765321 13344667889999999999999
Q ss_pred HhHHHHHHHHhhCCceEEEcCC----CCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCc-cCCCCCCCccEEEEccCCC
Q 043601 247 FGLSFVVYAQLQKGNCVVSMRK----FDLETALRAIEKYRVTHWWVVPPIILALAKNVSL-VKKFDLSSLKGIGSGAAPL 321 (488)
Q Consensus 247 ~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~-~~~~~l~~lr~v~~~G~~l 321 (488)
.++.+.++.++..|+++++.++ +++..+++.++++++|+++++|+++..+++.... ....++++||.+++|||++
T Consensus 311 ~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l 390 (652)
T 1pg4_A 311 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPI 390 (652)
T ss_dssp HHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCC
T ss_pred echHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCC
Confidence 9987778899999999999864 5889999999999999999999999999976221 3346789999999999999
Q ss_pred cHHHHHHHHhhCC--CCeEEeccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC
Q 043601 322 RKELVEECSKNLP--TVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP 399 (488)
Q Consensus 322 ~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~ 399 (488)
++++++++.+.++ ++.+++.||+||+++.++...+.....+.+++|+|+++++++|+| ++|++++.|+.|||+|+|+
T Consensus 391 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~ 469 (652)
T 1pg4_A 391 NPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDS 469 (652)
T ss_dssp CHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSC
T ss_pred CHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccC
Confidence 9999999999886 389999999999987666554333345678999999999999999 5899999999999999993
Q ss_pred -------------------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEe
Q 043601 400 -------------------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIP 451 (488)
Q Consensus 400 -------------------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~ 451 (488)
||+|||+|++++||++++.||+||+||++|++| +||++|.+||.|.+++|++
T Consensus 470 ~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg 549 (652)
T 1pg4_A 470 WPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVG 549 (652)
T ss_dssp CTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEE
T ss_pred CCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence 588999999999999999999999999999999 9999999999999999999
Q ss_pred ecCCCCCceEEEEEEeCCCCCCC---HHHHHHHHHhhcC
Q 043601 452 FPDPEAGEVPIAYVVRSPNSSLT---KEDVQKFVANDSQ 487 (488)
Q Consensus 452 ~~~~~~~~~~~~~v~~~~~~~~~---~~~i~~~~~~~l~ 487 (488)
.+++..++.++|+|+++++...+ .++|+++++++|+
T Consensus 550 ~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~ 588 (652)
T 1pg4_A 550 IPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIG 588 (652)
T ss_dssp EEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTC
T ss_pred EEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCC
Confidence 99988889999999998876555 5789999999886
No 10
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=7.1e-68 Score=537.45 Aligned_cols=438 Identities=23% Similarity=0.317 Sum_probs=369.3
Q ss_pred CCCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCe
Q 043601 26 NLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGI 105 (488)
Q Consensus 26 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (488)
+.|+.++|.++++++|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 379999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHhhcCCeEEEEccccH--------HHHhc-c-CCCeEEEcccCcccCCCCcCCCCccchHHHHh
Q 043601 106 ATTANPVYTVSELSKQVKDSSPKLVVTVPELW--------ERVKD-F-NIPAVLLGSNHIVSPRGLRSSSNIVYFDELIE 175 (488)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (488)
++|++|.++.+++.++++.++++++|++++.. ..+.. . ....+.+..+. . .+.++..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~ 168 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA----------E---EFLPLED 168 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC----------T---TSEEGGG
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc----------c---chhhhhh
Confidence 99999999999999999999999999987532 11111 1 12223222110 0 1122211
Q ss_pred hcCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHH-HHH
Q 043601 176 LSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSF-VVY 254 (488)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 254 (488)
... .........++++++|+|||||||.||+|++||+++.+. .......+...+++++++.+|++|.+++.. .++
T Consensus 169 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~--~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (539)
T 1mdb_A 169 LHT--EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYS--LKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL 244 (539)
T ss_dssp CCC--CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHH--HHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred ccc--cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHH--HHHHHHhhCCCCCCEEEEeecccccchhhHHHHH
Confidence 111 111223456789999999999999999999999999877 333455566788999999999999999854 688
Q ss_pred HHhhCCceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCC
Q 043601 255 AQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLP 334 (488)
Q Consensus 255 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~ 334 (488)
.++..|+++++.+.+++..+++.++++++|+++++|+++..+++. ......++++||.+++||+++++++.++|.+.++
T Consensus 245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~ 323 (539)
T 1mdb_A 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDA-ASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG 323 (539)
T ss_dssp HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHH-HHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhC-ccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC
Confidence 999999999999989999999999999999999999999999876 4445567899999999999999999999999996
Q ss_pred CCeEEeccCcccccccccccCCCCCCCCCCceeecCCC-ceEEEEeCCCCCCCCCCCcceEEEecC--------------
Q 043601 335 TVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAG-VEAQIVCVDTLKPLPPNQVGELWVRGP-------------- 399 (488)
Q Consensus 335 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~i~d~~~~~~~~~g~~Gel~v~g~-------------- 399 (488)
+.+++.||+||++..+. ...........++|+|+++ ..++|+| +++++++.|+.|||+|+|+
T Consensus 324 -~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~ 400 (539)
T 1mdb_A 324 -CTLQQVFGMAEGLVNYT-RLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNA 400 (539)
T ss_dssp -SEEEEEEECTTSCEEEC-CTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred -CcEEEEEcCCCCccccc-CCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhh
Confidence 99999999999653332 2111111234579999975 4799999 6899999999999999986
Q ss_pred -------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCC
Q 043601 400 -------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP 469 (488)
Q Consensus 400 -------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 469 (488)
||+|||+|++++||++++.||+||+||++|++| +||++|.+||+|.+++|++.+++..++.++++|++++
T Consensus 401 ~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~ 480 (539)
T 1mdb_A 401 ASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD 480 (539)
T ss_dssp HHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred hhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC
Confidence 688999999999999999999999999999999 9999999999999999999999888899999999874
Q ss_pred CCCCCHHHHHHHHHhh-cC
Q 043601 470 NSSLTKEDVQKFVAND-SQ 487 (488)
Q Consensus 470 ~~~~~~~~i~~~~~~~-l~ 487 (488)
...+.++++++++++ |+
T Consensus 481 -~~~~~~~l~~~l~~~~L~ 498 (539)
T 1mdb_A 481 -EAPKAAELKAFLRERGLA 498 (539)
T ss_dssp -SCCCHHHHHHHHHHTTCC
T ss_pred -CCCCHHHHHHHHHhCCCC
Confidence 457899999999997 75
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.6e-67 Score=530.79 Aligned_cols=434 Identities=18% Similarity=0.252 Sum_probs=368.1
Q ss_pred CCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeE
Q 043601 27 LSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106 (488)
Q Consensus 27 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (488)
||+.+.|.++++++|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 78 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY 78 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999997 7899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCCeEEEcccCcccCCCCcCCCCccchHHHHhhcCCCCCCCCC
Q 043601 107 TTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPDV 186 (488)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (488)
+|+++.++.+++.++++.++++++|++...... ........ ...+.++..........+..
T Consensus 79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 139 (512)
T 3fce_A 79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT----DLPVRIVS---------------EDNLKDIFFTHKGNTPNPEH 139 (512)
T ss_dssp EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS----CCSSEEEE---------------THHHHHHHHHTTTCCCCGGG
T ss_pred EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc----ccccceec---------------hhhhhhhcccccccCCCccc
Confidence 999999999999999999999999997543210 01111111 01122222222211222334
Q ss_pred CCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEEc
Q 043601 187 SVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSM 266 (488)
Q Consensus 187 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 266 (488)
...++++++|+|||||||.||+|++||.++.+. .......+...+++++++.+|++|..++ ..++.++..|+++++.
T Consensus 140 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~--~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 140 AVKGDENFYIIYTSGSTGNPKGVQITYNCLVSF--TKWAVEDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAI 216 (512)
T ss_dssp SCCTTSEEEEEEECC----CEEEEEEHHHHHHH--HHHHHHHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEEC
T ss_pred cCCCCCeEEEEECCCCCCCCceEEEehHHHHHH--HHHHHHhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEEC
Confidence 567899999999999999999999999999887 4445566778899999999999999998 6788999999999998
Q ss_pred CC---CCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEeccC
Q 043601 267 RK---FDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYG 343 (488)
Q Consensus 267 ~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 343 (488)
+. .++..+++.++++++|++.++|+++..++.. ......++++||.+++||+++++++.++|.+.|+++++++.||
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 295 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLME-ASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYG 295 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTS-TTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhh-ccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcc
Confidence 76 6899999999999999999999999999876 5556678999999999999999999999999997799999999
Q ss_pred cccccccccccCCCC---CCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC---------------------
Q 043601 344 MTETCGVVTVENPLL---GVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--------------------- 399 (488)
Q Consensus 344 ~tE~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~--------------------- 399 (488)
+||+++.++...... ......++|+|.+++.++++| +++++++.|+.|||+++|+
T Consensus 296 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~ 374 (512)
T 3fce_A 296 PTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMID 374 (512)
T ss_dssp CGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEET
T ss_pred cChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCC
Confidence 999987665433211 123566899999999999999 6899999999999999985
Q ss_pred ---CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCC
Q 043601 400 ---ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL 473 (488)
Q Consensus 400 ---~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~ 473 (488)
||+|||+|++ +||++++.||+||+||++|++| +||+++.++|+|.+++|++.++...++.++++|+++++...
T Consensus 375 ~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~ 453 (512)
T 3fce_A 375 GERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFE 453 (512)
T ss_dssp TEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCS
T ss_pred CCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcccc
Confidence 6899999999 8999999999999999999999 99999999999999999999988888899999999876544
Q ss_pred CH----HHHHHHHHhhcC
Q 043601 474 TK----EDVQKFVANDSQ 487 (488)
Q Consensus 474 ~~----~~i~~~~~~~l~ 487 (488)
+. ++|+++++++|+
T Consensus 454 ~~~~~~~~l~~~l~~~L~ 471 (512)
T 3fce_A 454 KEFKLTSAIKKELNERLP 471 (512)
T ss_dssp SHHHHHHHHHHHHHTTSC
T ss_pred chhhhHHHHHHHHHhhCc
Confidence 43 578899988876
No 12
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.3e-68 Score=574.14 Aligned_cols=471 Identities=39% Similarity=0.632 Sum_probs=336.9
Q ss_pred ceeeecCCCCCCCCCCCCCCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 043601 9 DGIYRSLRPALVLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPN 88 (488)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n 88 (488)
+.+|++..|+..+|.. +|+.++|.++++++|+++|+++.+.++++||+||+++++++|++|+++|+++||+|+++++|
T Consensus 45 ~~~~~~~~~~~~~p~~--~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n 122 (979)
T 3tsy_A 45 DVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPN 122 (979)
T ss_dssp CCCBCCSSCCCCCCTT--SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSS
T ss_pred CceeecCCCCCCCCCC--CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCC
Confidence 3456667777666655 89999999999999999999997667899999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc----CCCeEEEcccCcccCCCCcCC
Q 043601 89 SIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF----NIPAVLLGSNHIVSPRGLRSS 164 (488)
Q Consensus 89 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 164 (488)
++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+... ....+.++... .....
T Consensus 123 s~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 197 (979)
T 3tsy_A 123 CPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNE-----SVPIP 197 (979)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCT-----TSCCC
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcc-----cccCC
Confidence 9999999999999999999999999999999999999999999998765544332 22222221110 00111
Q ss_pred CCccchHHHHhhcCCC-CCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhh--hhhhcCCCCcEEEEec
Q 043601 165 SNIVYFDELIELSGNA-SNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAM--DQELAGALDYVTLCVL 241 (488)
Q Consensus 165 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ 241 (488)
.....+.++....... ...+.....++++++|+|||||||.||+|+++|+++.+....... ...+...+++++++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~ 277 (979)
T 3tsy_A 198 EGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVL 277 (979)
T ss_dssp TTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECS
T ss_pred cccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEEC
Confidence 2223344433221110 122334567899999999999999999999999999876322111 1134467899999999
Q ss_pred chhhHHhHHHHHHHHhhCCceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCC
Q 043601 242 PMFHVFGLSFVVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPL 321 (488)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l 321 (488)
|++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+++..+++. ......++++||.+++||+++
T Consensus 278 p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~~~~gg~~l 356 (979)
T 3tsy_A 278 PMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS-SETEKYDLSSIRVVKSGAAPL 356 (979)
T ss_dssp CSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC-GGGGTSCCTTCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC-ccccCCCccceEEEEEcCCCC
Confidence 9999999877788999999999999999999999999999999999999999999987 555667899999999999999
Q ss_pred cHHHHHHHHhhCCCCeEEeccCcccccccccccC---CCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEec
Q 043601 322 RKELVEECSKNLPTVTVFQGYGMTETCGVVTVEN---PLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRG 398 (488)
Q Consensus 322 ~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g 398 (488)
++++.++|.+.|+++++++.||+||++.+++... ........+++|+|+++++++|+|++++++++.|+.|||+|+|
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g 436 (979)
T 3tsy_A 357 GKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRG 436 (979)
T ss_dssp CSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEES
T ss_pred CHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEEC
Confidence 9999999999998799999999999997665432 2222456778999999999999998889999999999999998
Q ss_pred C---------------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecC
Q 043601 399 P---------------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPD 454 (488)
Q Consensus 399 ~---------------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~ 454 (488)
+ ||+|||+|++++||.+++.||+||+||++|++| +||++|.++|+|.+++|++.++
T Consensus 437 ~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~ 516 (979)
T 3tsy_A 437 HQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKE 516 (979)
T ss_dssp TTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------
T ss_pred CCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecc
Confidence 5 689999999999999999999999999999999 9999999999999999999999
Q ss_pred CCCCceEEEEEEeCCCCCCCHHHHHHHHHhhcC
Q 043601 455 PEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQ 487 (488)
Q Consensus 455 ~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l~ 487 (488)
+..++.++++|+.+++...+.++++++++++|+
T Consensus 517 ~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~ 549 (979)
T 3tsy_A 517 EAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVV 549 (979)
T ss_dssp ---------------------------------
T ss_pred cCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcc
Confidence 888999999999988878888999999999886
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=6.7e-67 Score=527.43 Aligned_cols=432 Identities=20% Similarity=0.279 Sum_probs=371.5
Q ss_pred CCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCcchHHHHHHHHHcCCe
Q 043601 27 LSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHL-GVTKHDVVLIFAPNSIQFPICLLGVIAIGGI 105 (488)
Q Consensus 27 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (488)
||+.++|.++|+++|+++|+++. ++++||+||+++++++|++|++. |.++|++|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 68999999999999999999987 79999999999999999999875 8889999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCCeEEEcccCcccCCCCcCCCCccchHHHHhhcCCCCCCCC
Q 043601 106 ATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPD 185 (488)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (488)
++|+++.++.+++.++++.++++++|++........ ........++++...... .....
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~ 137 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAV--------------------GQQIQTVSAEELLENEGG-SVSQD 137 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCC--------------------CCSSCEEEHHHHHTSCSC-CCCGG
T ss_pred EEecCCCChHHHHHHHHHhCCCCEEEecccccchhc--------------------ccccceecHhhhhccccC-Ccccc
Confidence 999999999999999999999999999754321110 011122334444433221 12223
Q ss_pred CCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEE
Q 043601 186 VSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVS 265 (488)
Q Consensus 186 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 265 (488)
....++++++|+|||||||.||+|++||.++.+. .......+...+++++++.+|++|..++ ..++.++..|+++++
T Consensus 138 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~ 214 (511)
T 3e7w_A 138 QWVKEHETFYIIYTSGSTGNPKGVQISAANLQSF--TDWICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHC 214 (511)
T ss_dssp GSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHH--HHHHHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEE
T ss_pred ccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHH--HHHHHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEE
Confidence 3457789999999999999999999999999887 3345556677889999999999999997 678899999999999
Q ss_pred cCC---CCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEecc
Q 043601 266 MRK---FDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGY 342 (488)
Q Consensus 266 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 342 (488)
.+. .++..+++.++++++|++.++|+++..++.. .......++++|.+++||+++++++.+++.+.|+++++++.|
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 293 (511)
T 3e7w_A 215 VTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD-PGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTY 293 (511)
T ss_dssp CCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS-TTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECC
T ss_pred cChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc-cccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCc
Confidence 876 6899999999999999999999999999987 555567789999999999999999999999999779999999
Q ss_pred CcccccccccccCCCC---CCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC--------------------
Q 043601 343 GMTETCGVVTVENPLL---GVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP-------------------- 399 (488)
Q Consensus 343 G~tE~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~-------------------- 399 (488)
|+||++..++...... ......++|+|+++++++|+| +++++++.|+.|||+|+|+
T Consensus 294 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 372 (511)
T 3e7w_A 294 GPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSH 372 (511)
T ss_dssp CCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEES
T ss_pred ccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCC
Confidence 9999987666432211 123556799999999999999 5799999999999999975
Q ss_pred ----CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCC
Q 043601 400 ----ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS 472 (488)
Q Consensus 400 ----~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 472 (488)
||+|||+|++ +||.+++.||+||+||++|++| +||+++.++|.|.+++|++.+++..++.++++|+++++..
T Consensus 373 ~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~ 451 (511)
T 3e7w_A 373 EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF 451 (511)
T ss_dssp SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC
T ss_pred CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc
Confidence 5899999999 6999999999999999999999 9999999999999999999998888899999999988755
Q ss_pred CCH----HHHHHHHHhhcC
Q 043601 473 LTK----EDVQKFVANDSQ 487 (488)
Q Consensus 473 ~~~----~~i~~~~~~~l~ 487 (488)
.+. ++|+++++++|+
T Consensus 452 ~~~~~~~~~l~~~l~~~L~ 470 (511)
T 3e7w_A 452 EKEFQLTSAIKKELAASLP 470 (511)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred cchhhHHHHHHHHHHhhCc
Confidence 443 678888888876
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.6e-67 Score=541.42 Aligned_cols=455 Identities=22% Similarity=0.327 Sum_probs=371.5
Q ss_pred CHHHHHhhccccCCCceEEEeCC----CCcceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCcchHHHHHHHHHc
Q 043601 28 SMVHFLFRNSASYGSKSALIDAD----SGESLTFSQFKSIVIKVSHGFR-HLGVTKHDVVLIFAPNSIQFPICLLGVIAI 102 (488)
Q Consensus 28 ~l~~~l~~~a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 102 (488)
++.++|.++++++|+++|+++.+ .++++||+||+++++++|+.|+ ++|+++||+|+++++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 45677889999999999998731 3478999999999999999999 999999999999999999999999999999
Q ss_pred CCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHH---------HHhcc-----CCCeEE-EcccCcccCCCCcCCCCc
Q 043601 103 GGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWE---------RVKDF-----NIPAVL-LGSNHIVSPRGLRSSSNI 167 (488)
Q Consensus 103 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~ 167 (488)
|++++|+++.++.+++.+++++++++++|+++.... .+... ....++ +....... .. ......
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~-~~~~~~ 240 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS-VA-FHAPRD 240 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS-CC-CCSSSE
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc-cc-cCCCcc
Confidence 999999999999999999999999999999876422 11111 122222 22110000 00 001122
Q ss_pred cchHHHHhhcCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHH
Q 043601 168 VYFDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVF 247 (488)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (488)
..+++++.... .........++++++|+|||||||.||||+++|.++...... .....+...++|++++..|++|..
T Consensus 241 ~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~ 317 (663)
T 1ry2_A 241 LDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL-TMRYTFDTHQEDVFFTAGDIGWIT 317 (663)
T ss_dssp EEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHH-HHHHHSCCCSSCEEEECSCTTSHH
T ss_pred ccHHHHHhhcC--CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHH-HHHHhcCCCCCcEEEEcCCcHHhh
Confidence 34666654322 223344567899999999999999999999999998765321 133446678899999999999999
Q ss_pred hHHHHHHHHhhCCceEEEcCC----CCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCc-cCCCCCCCccEEEEccCCCc
Q 043601 248 GLSFVVYAQLQKGNCVVSMRK----FDLETALRAIEKYRVTHWWVVPPIILALAKNVSL-VKKFDLSSLKGIGSGAAPLR 322 (488)
Q Consensus 248 ~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~-~~~~~l~~lr~v~~~G~~l~ 322 (488)
++.+.++.++..|+++++.++ .++..+++.|+++++|+++++|+++..+.+.... ....++++||.+++|||+++
T Consensus 318 g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 397 (663)
T 1ry2_A 318 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIA 397 (663)
T ss_dssp HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCC
T ss_pred hhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCC
Confidence 987778899999999998864 5789999999999999999999999999876221 23567899999999999999
Q ss_pred HHHHHHHHhhCC--CCeEEeccCcccccccccccCC-CCCCCCCCceeecCCCceEEEEeCCCCCCCCC-CCcceEEEec
Q 043601 323 KELVEECSKNLP--TVTVFQGYGMTETCGVVTVENP-LLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPP-NQVGELWVRG 398 (488)
Q Consensus 323 ~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~-g~~Gel~v~g 398 (488)
+++++++.+.++ ++.+++.||+||+++.++...+ .....+.+++|+|+++++++|+|+++|++++. |+.|||+++|
T Consensus 398 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g 477 (663)
T 1ry2_A 398 AEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKA 477 (663)
T ss_dssp HHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESS
T ss_pred HHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEec
Confidence 999999999885 4899999999999876665433 22245678999999999999999658999988 9999999999
Q ss_pred C-------------------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEE
Q 043601 399 P-------------------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVI 450 (488)
Q Consensus 399 ~-------------------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~ 450 (488)
+ ||+|||+|++++||++++.||+||+||++|++| +||++|.+||.|.+++|+
T Consensus 478 ~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vv 557 (663)
T 1ry2_A 478 AWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVV 557 (663)
T ss_dssp CCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEE
T ss_pred CCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEE
Confidence 4 588999999999999999999999999999999 999999999999999999
Q ss_pred eecCCCCCceEEEEEEeCCCCC---C-C------HHHHHHHHHhhcC
Q 043601 451 PFPDPEAGEVPIAYVVRSPNSS---L-T------KEDVQKFVANDSQ 487 (488)
Q Consensus 451 ~~~~~~~~~~~~~~v~~~~~~~---~-~------~~~i~~~~~~~l~ 487 (488)
+.+++..++.++++|+++++.. . + .++|+++++++|+
T Consensus 558 g~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~ 604 (663)
T 1ry2_A 558 GFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIG 604 (663)
T ss_dssp CCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTC
T ss_pred EEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCC
Confidence 9999888999999999987643 2 2 5789999999886
No 15
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.6e-67 Score=535.18 Aligned_cols=443 Identities=26% Similarity=0.393 Sum_probs=345.5
Q ss_pred CCCHHHHHhhccccCCCceEEEeC--CCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcC
Q 043601 26 NLSMVHFLFRNSASYGSKSALIDA--DSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIG 103 (488)
Q Consensus 26 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (488)
++|+.++|.++++++|+++|+++. +.++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 479999999999999999999852 225789999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc-----CCCeEEEcccCcccCCCCcCCCCccchHHHHhhcC
Q 043601 104 GIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF-----NIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSG 178 (488)
Q Consensus 104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (488)
++++|++|.++.+++.++++.++++++|++++....+... ....++..... .......+++++....
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 168 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK--------APEGYLAYEEALGEEA 168 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC--------CCTTCEEHHHHCCSCC
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCC--------CCcccccHHHHhhccC
Confidence 9999999999999999999999999999998876554432 11222221110 0012234555443221
Q ss_pred CCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhh
Q 043601 179 NASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQ 258 (488)
Q Consensus 179 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (488)
. .....++++++|+|||||||.||+|++||.++............+...+++++++.+|++|..++ ..++.++.
T Consensus 169 --~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~ 242 (541)
T 1v25_A 169 --D---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAATL 242 (541)
T ss_dssp --C---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHHH
T ss_pred --C---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH-HHHHHHHh
Confidence 1 13456789999999999999999999999999876333222234556789999999999999998 56778899
Q ss_pred CCceEEEcCC-CCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCe
Q 043601 259 KGNCVVSMRK-FDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVT 337 (488)
Q Consensus 259 ~G~~~~~~~~-~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~ 337 (488)
.|+++++.+. +++..+++.++++++|+++++|+++..+++. ......++++||.+++||+++++++.++| +.++ ++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g-~~ 319 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG-VE 319 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHH-HHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT-CE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhh-hhccCCcchhccEEEECCCCCCHHHHHHH-HHhC-Cc
Confidence 9999999864 6999999999999999999999999999876 33345678999999999999999999999 6675 99
Q ss_pred EEeccCcccccccccccCCCCC---------CCCCCceeecCCCceEEEEeCCCCCCCCC--CCcceEEEecC-------
Q 043601 338 VFQGYGMTETCGVVTVENPLLG---------VQNSGSTGTLVAGVEAQIVCVDTLKPLPP--NQVGELWVRGP------- 399 (488)
Q Consensus 338 i~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~~~i~d~~~~~~~~~--g~~Gel~v~g~------- 399 (488)
+++.||+||++.+++....... .....++|+|+++++++|+| +++++++. ++.|||+|+|+
T Consensus 320 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~ 398 (541)
T 1v25_A 320 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYY 398 (541)
T ss_dssp EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCB
T ss_pred eeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhcccc
Confidence 9999999999877665433210 02346899999999999999 57888884 36899999986
Q ss_pred --------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEE
Q 043601 400 --------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPI 462 (488)
Q Consensus 400 --------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~ 462 (488)
||+|||+|++++||++++.||+||+||++|++| +||++|.+||+|.+++|++.+++.+++.++
T Consensus 399 ~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~ 478 (541)
T 1v25_A 399 GNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 478 (541)
T ss_dssp TCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEE
T ss_pred CChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEE
Confidence 588999999999999999999999999999999 999999999999999999999998899999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh-hcC
Q 043601 463 AYVVRSPNSSLTKEDVQKFVAN-DSQ 487 (488)
Q Consensus 463 ~~v~~~~~~~~~~~~i~~~~~~-~l~ 487 (488)
++|+++ +...+.+++++++++ +|+
T Consensus 479 a~vv~~-~~~~~~~~l~~~~~~~~L~ 503 (541)
T 1v25_A 479 AVVVPR-GEKPTPEELNEHLLKAGFA 503 (541)
T ss_dssp ECC--------------------CCC
T ss_pred EEEEEC-CCCCCHHHHHHHHHhccCc
Confidence 999987 445677889999988 775
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4.9e-66 Score=525.65 Aligned_cols=423 Identities=21% Similarity=0.272 Sum_probs=357.6
Q ss_pred CCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeE
Q 043601 27 LSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106 (488)
Q Consensus 27 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (488)
.|+.++|.++++++|+++|+++. ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 116 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY 116 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 78999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCC-eEEEcccCcccCCCCcCCCCccchHHHHhhcCCCCCCCC
Q 043601 107 TTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIP-AVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPD 185 (488)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (488)
+|+++.++.+++.++++.++++++|++.+....+...... .+...... .+. ... .....
T Consensus 117 vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~----~~~--~~~~~ 176 (563)
T 1amu_A 117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEED--------------TIK----IRE--GTNLH 176 (563)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCS--------------TTT----TSC--CSCCC
T ss_pred EEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecch--------------hhc----ccc--CccCC
Confidence 9999999999999999999999999998776655443221 11111000 000 000 11112
Q ss_pred CCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEE
Q 043601 186 VSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVS 265 (488)
Q Consensus 186 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 265 (488)
....++++++|+|||||||.||+|++||.++.+. .......+...+++++++..|++|..++ ..++.++..|+++++
T Consensus 177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~--~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~ 253 (563)
T 1amu_A 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNL--KVFFENSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYI 253 (563)
T ss_dssp CCCCTTSEEEEEEEC-----CEEEEEESHHHHHH--HHHHHHTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEE
T ss_pred CCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHH--HHHHHHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEE
Confidence 2346789999999999999999999999999876 3334455667889999999999999888 677889999999999
Q ss_pred cCC---CCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEecc
Q 043601 266 MRK---FDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGY 342 (488)
Q Consensus 266 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 342 (488)
.+. .++..+++.++++++|++.++|+++..+.. ..+++||.+++||+++++++.++|.+. +.+++.|
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-------~~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~Y 323 (563)
T 1amu_A 254 ILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-------ERILSIQTLITAGSATSPSLVNKWKEK---VTYINAY 323 (563)
T ss_dssp CCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-------TTCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEE
T ss_pred cChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-------cccccccEEEEEEecCCHHHHHHHHhC---CeEEEEE
Confidence 875 689999999999999999999999876643 246889999999999999999999874 7899999
Q ss_pred CcccccccccccCCCC-CCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC----------------------
Q 043601 343 GMTETCGVVTVENPLL-GVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP---------------------- 399 (488)
Q Consensus 343 G~tE~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~---------------------- 399 (488)
|+||++..++...... ......++|+|+++++++|+| +++++++.|+.|||+|+|+
T Consensus 324 G~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~ 402 (563)
T 1amu_A 324 GPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPF 402 (563)
T ss_dssp CCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSS
T ss_pred CcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCC
Confidence 9999987665543221 123566899999999999999 6899999999999999985
Q ss_pred -----CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCC
Q 043601 400 -----ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNS 471 (488)
Q Consensus 400 -----~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~ 471 (488)
||+|||+|++++||++++.||+||+||++|++| +||++|.++|+|.+++|++.+++.+++.++++|+.++
T Consensus 403 ~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~-- 480 (563)
T 1amu_A 403 VPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK-- 480 (563)
T ss_dssp STTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--
T ss_pred CCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--
Confidence 788999999999999999999999999999999 9999999999999999999999888899999999864
Q ss_pred CCCHHHHHHHHHhhcC
Q 043601 472 SLTKEDVQKFVANDSQ 487 (488)
Q Consensus 472 ~~~~~~i~~~~~~~l~ 487 (488)
..+.++|+++++++|+
T Consensus 481 ~~~~~~l~~~l~~~L~ 496 (563)
T 1amu_A 481 HIPLEQLRQFSSEELP 496 (563)
T ss_dssp CCCHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhhCc
Confidence 4678999999999886
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.6e-67 Score=538.36 Aligned_cols=428 Identities=22% Similarity=0.295 Sum_probs=304.7
Q ss_pred CCCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCe
Q 043601 26 NLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGI 105 (488)
Q Consensus 26 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (488)
..++.++|.++++++|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 151 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGG 151 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 479999999999999999999997 789999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCCeEEEcccCcccCCCCcCCCCccchHHHHhhcCCCCCCCC
Q 043601 106 ATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPD 185 (488)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (488)
++|++|.++.+++.+++++++++++|++.+....+... ..+.+. + ....... .....
T Consensus 152 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~-~------------------~~~~~~~--~~~~~ 208 (570)
T 4gr5_A 152 YTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT--TTLYVE-D------------------EAASDAP--AGNLA 208 (570)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS--EEEECC-C---------------------------CCCCC
T ss_pred EEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC--cceeee-c------------------ccccccc--ccccC
Confidence 99999999999999999999999999997654433211 011100 0 0000000 12223
Q ss_pred CCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEE
Q 043601 186 VSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVS 265 (488)
Q Consensus 186 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 265 (488)
....++++++|+|||||||.||+|++||.++.+... ........++++++..+|++|..+. ..++.++..|+++++
T Consensus 209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~---~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~ 284 (570)
T 4gr5_A 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL---GQDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVL 284 (570)
T ss_dssp CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS---SCCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEE
T ss_pred CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH---hhhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEE
Confidence 456789999999999999999999999999976532 2334457789999999999987665 678889999999999
Q ss_pred cC--CCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEeccC
Q 043601 266 MR--KFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYG 343 (488)
Q Consensus 266 ~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 343 (488)
.+ .+++..+++.++++++|++.++|+++..+++. . ...+++||.+++||++++.++.+++.+.++++++++.||
T Consensus 285 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~---~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG 360 (570)
T 4gr5_A 285 QSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDE-V---PEAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYG 360 (570)
T ss_dssp CSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH-C---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred cCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhh-c---hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeec
Confidence 86 47899999999999999999999999999976 2 235889999999999999999999999998799999999
Q ss_pred cccccccccccCCC--CCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC----------------------
Q 043601 344 MTETCGVVTVENPL--LGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP---------------------- 399 (488)
Q Consensus 344 ~tE~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~---------------------- 399 (488)
+||+++..+..... .......++|+|+++++++|+| +++++++.|+.|||+|+|+
T Consensus 361 ~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~ 439 (570)
T 4gr5_A 361 PAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPF 439 (570)
T ss_dssp CGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTT
T ss_pred hhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCC
Confidence 99998766543321 1133456799999999999999 6899999999999999984
Q ss_pred -------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCC
Q 043601 400 -------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP 469 (488)
Q Consensus 400 -------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 469 (488)
||+|||+|++++||++++.||+||+||++|++| +||++|.+||.|.+++|++.+++.+++.++++|+.++
T Consensus 440 ~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~ 519 (570)
T 4gr5_A 440 AGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAER 519 (570)
T ss_dssp CCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------------------------
T ss_pred CCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecC
Confidence 689999999999999999999999999999999 9999999999999999999998888899999999865
Q ss_pred C-CCCCHHHHHHHHHhhcC
Q 043601 470 N-SSLTKEDVQKFVANDSQ 487 (488)
Q Consensus 470 ~-~~~~~~~i~~~~~~~l~ 487 (488)
+ ...+.++|+++|+++|+
T Consensus 520 ~~~~~~~~~l~~~l~~~l~ 538 (570)
T 4gr5_A 520 ADAPPDAAELRRHVAEALP 538 (570)
T ss_dssp -------------------
T ss_pred CCCCcCHHHHHHHHHhhCc
Confidence 4 45678899999999886
No 18
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.8e-68 Score=538.69 Aligned_cols=441 Identities=23% Similarity=0.296 Sum_probs=313.3
Q ss_pred CCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeE
Q 043601 27 LSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106 (488)
Q Consensus 27 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (488)
.|+.++|.++++++|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 78999999999999999999997 7899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHhhcCCeEEEEccccH--------HHHhcc--CCCeEEEcccCcccCCCCcCCCCccchHHHHhh
Q 043601 107 TTANPVYTVSELSKQVKDSSPKLVVTVPELW--------ERVKDF--NIPAVLLGSNHIVSPRGLRSSSNIVYFDELIEL 176 (488)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (488)
+|+++.++.+++.++++.++++++|++.... ..+... ....+...... .....+.++...
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 177 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ----------ATDFGLLDWIET 177 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC----------TTSEEHHHHHHS
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC----------ccccchhhhhhc
Confidence 9999999999999999999999999987643 122211 11222222110 011123333332
Q ss_pred cCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHH-HHHH
Q 043601 177 SGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSF-VVYA 255 (488)
Q Consensus 177 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 255 (488)
... .........++++++|+|||||||.||+|++||.++.+. .......+...+++++++.+|++|.+++.. .++.
T Consensus 178 ~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~--~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 254 (544)
T 3o83_A 178 PAE-TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYS--VRASAEICGLNSNTRLLCALPAPHNFMLSSPGALG 254 (544)
T ss_dssp CCS-SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHH--HHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred ccc-cccccccCCccceEEEEECCCcccCCceEEechHHHHHH--HHHHHHHhCCCCCCeEEEecCcceEeecchHHHHH
Confidence 221 112224557899999999999999999999999999887 444556677889999999999999998854 5888
Q ss_pred HhhCCceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCC
Q 043601 256 QLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPT 335 (488)
Q Consensus 256 ~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~ 335 (488)
++..|+++++.+.+++..+++.++++++|+++++|+++..+++. ......++++||.+++||+++++++.+.+.+.++
T Consensus 255 ~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~- 332 (544)
T 3o83_A 255 VLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEK-AAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN- 332 (544)
T ss_dssp HHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHH-HTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC-
T ss_pred HHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhc-hhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC-
Confidence 99999999999999999999999999999999999999999887 4444556889999999999999999999999986
Q ss_pred CeEEeccCcccccccccccCCCCCCCCCCceeecC-CCceEEEEeCCCCCCCCCCCcceEEEecC---------------
Q 043601 336 VTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGP--------------- 399 (488)
Q Consensus 336 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~--------------- 399 (488)
+++++.||+||++..++.... .......++|+|+ +++.++|+| +++++++.|+.|||+|+|+
T Consensus 333 ~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 410 (544)
T 3o83_A 333 CKLQQVFGMAEGLVNYTRLDD-SDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQ 410 (544)
T ss_dssp SEEEEEEECTTSCEEECCTTS-CHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHH
T ss_pred CcEEeeeccccccceeecCCC-chhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhh
Confidence 999999999998754433221 1122345789996 899999999 7899999999999999986
Q ss_pred ------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCC
Q 043601 400 ------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN 470 (488)
Q Consensus 400 ------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 470 (488)
||+|||+|++++||.+++.||+||+||++|++| +||+++.+||+|.+++|++.+++..++.++++|+.++
T Consensus 411 ~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~- 489 (544)
T 3o83_A 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN- 489 (544)
T ss_dssp HBCTTCCEEEEEEEEECTTSCEEEEEEEC---------------------------------------------------
T ss_pred hCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-
Confidence 688999999999999999999999999999999 9999999999999999999999989999999999876
Q ss_pred CCCCHHHHHHHHHh-hcC
Q 043601 471 SSLTKEDVQKFVAN-DSQ 487 (488)
Q Consensus 471 ~~~~~~~i~~~~~~-~l~ 487 (488)
...+.+++++++++ +|+
T Consensus 490 ~~~~~~~l~~~~~~~~l~ 507 (544)
T 3o83_A 490 PELKAVVLRRHLMELGIA 507 (544)
T ss_dssp ------------------
T ss_pred CCCCHHHHHHHHHhCCCC
Confidence 45677888888887 564
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.4e-67 Score=530.69 Aligned_cols=435 Identities=28% Similarity=0.414 Sum_probs=305.8
Q ss_pred CCCCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCC
Q 043601 25 PNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGG 104 (488)
Q Consensus 25 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (488)
+++|+.++|.++++++|+++|+++. ++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 4689999999999999999999997 78999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc-----CCCeEEEcccCcccCCCCcCCCCccchHHHHhhcCC
Q 043601 105 IATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF-----NIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGN 179 (488)
Q Consensus 105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (488)
+++|++|.++.+++.++++.++++++|++.+....+... ....++...+ ....+.++......
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 149 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD------------GSGPFAPFKDLASD 149 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC------------CCSSCEEGGGTCCC
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC------------CCcChhhHhhccCC
Confidence 999999999999999999999999999998876553221 1122222211 11122222221111
Q ss_pred CCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhC
Q 043601 180 ASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQK 259 (488)
Q Consensus 180 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (488)
.........++++++|+|||||||.||+|++||.++.+. .......+...+++++++.+|++|..++...+...+..
T Consensus 150 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~ 226 (509)
T 3ivr_A 150 -TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIA--QSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAG 226 (509)
T ss_dssp -SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHH--HHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred -CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHH--HHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhC
Confidence 223344567899999999999999999999999999887 34455667788999999999999999985444445555
Q ss_pred CceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEE
Q 043601 260 GNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVF 339 (488)
Q Consensus 260 G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~ 339 (488)
|++++ ...+++..+++.++++++|+++++|+++..+++. . ...+++++|.++.+|++ ++.+.+.+.+++++++
T Consensus 227 g~~~~-~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~ 299 (509)
T 3ivr_A 227 GASVI-AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ-A--APAQLASLRAVTGLDTP---ETIERFEATCPNATFW 299 (509)
T ss_dssp CEEEE-CSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHH-C--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEE
T ss_pred CcEEE-ecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhc-c--cccchhhhheecccCCh---HHHHHHHHhcCCCeEE
Confidence 55554 4588999999999999999999999999999987 3 44568899999999987 8899999999779999
Q ss_pred eccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC--------------------
Q 043601 340 QGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP-------------------- 399 (488)
Q Consensus 340 ~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~-------------------- 399 (488)
+.||+||++++++..... ....++|+|+++++++|+| +++++++.|+.|||+|+|+
T Consensus 300 ~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g 375 (509)
T 3ivr_A 300 ATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG 375 (509)
T ss_dssp EEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGG
T ss_pred cccCccccccccccCccc---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcC
Confidence 999999999776655432 2334599999999999999 5799999999999999996
Q ss_pred CccccceEEEccCCcEEEEccc--CcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCC
Q 043601 400 ILMPGDLGYFDEHGQLFIVDRI--KELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT 474 (488)
Q Consensus 400 ~~~tGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 474 (488)
||+|||+|++++||.+++.||+ +|+||++|++| +||+++.++|+|.+++|++.+++.+++.++++|+++++...+
T Consensus 376 ~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~ 455 (509)
T 3ivr_A 376 WHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIA 455 (509)
T ss_dssp SEEEEEEEEECTTSCEEEEEEC----------------------------------------------------------
T ss_pred CcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCC
Confidence 5889999999999999999999 99999999999 999999999999999999999998899999999999888888
Q ss_pred HHHHHHHHHhhcC
Q 043601 475 KEDVQKFVANDSQ 487 (488)
Q Consensus 475 ~~~i~~~~~~~l~ 487 (488)
.++|+++++++|+
T Consensus 456 ~~~l~~~l~~~L~ 468 (509)
T 3ivr_A 456 ADALAEFVASLIA 468 (509)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCc
Confidence 8999999999886
No 20
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.7e-66 Score=525.51 Aligned_cols=443 Identities=22% Similarity=0.315 Sum_probs=358.3
Q ss_pred CC-HHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCe
Q 043601 27 LS-MVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGI 105 (488)
Q Consensus 27 ~~-l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (488)
++ +.++|.++++ +|+++|+++. ++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 99 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVV 99 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCE
T ss_pred eeHHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCce
Confidence 44 8889999999 9999999987 689999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc-----CC-CeEEEcccCcccCCCCcCCCCccchHHHHhhcCC
Q 043601 106 ATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF-----NI-PAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGN 179 (488)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (488)
++|+++.++.+++.+++++++++++|++.+....+... .. ..+.+..... ........++++.....
T Consensus 100 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~- 172 (529)
T 2v7b_A 100 PVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE------SEPRLAPLFEELIDAAA- 172 (529)
T ss_dssp EEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------------CCCBHHHHHHTSC-
T ss_pred EEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccc------cccccccchhhhhccCC-
Confidence 99999999999999999999999999998766554332 11 2222211100 00111224555554322
Q ss_pred CCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHH-HHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhh
Q 043601 180 ASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNF-IASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQ 258 (488)
Q Consensus 180 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (488)
.........++++++|+|||||||.||+|++||.++ ... .......+...+++++++..|++|..++...++.++.
T Consensus 173 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~--~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 249 (529)
T 2v7b_A 173 -PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTA--ELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLS 249 (529)
T ss_dssp -CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHH--HHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHH
T ss_pred -CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHH--HHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHh
Confidence 222233467899999999999999999999999998 444 2223334557789999999999999998667788999
Q ss_pred CCceEEEc-CCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCe
Q 043601 259 KGNCVVSM-RKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVT 337 (488)
Q Consensus 259 ~G~~~~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~ 337 (488)
.|+++++. +.+++..+++.++++++|+++++|+++..+++. .........++|.+++|||++++++.++|.+.|+ ++
T Consensus 250 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g-~~ 327 (529)
T 2v7b_A 250 VGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS-PNLPARADVAIRICTSAGEALPREIGERFTAHFG-CE 327 (529)
T ss_dssp HTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTC-TTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS-CC
T ss_pred cCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhC-cccccccCCceEEEEEcCCCCCHHHHHHHHHHhC-Cc
Confidence 99999987 568999999999999999999999999999876 3222221348999999999999999999999886 99
Q ss_pred EEeccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC------------------
Q 043601 338 VFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP------------------ 399 (488)
Q Consensus 338 i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~------------------ 399 (488)
+++.||+||++.+++..... ....+++|+|+++++++|+| +++++++.|+.|||+|+|+
T Consensus 328 i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~ 404 (529)
T 2v7b_A 328 ILDGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL 404 (529)
T ss_dssp EEEEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE
T ss_pred eeeeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh
Confidence 99999999997665554332 35678899999999999999 6899999999999999986
Q ss_pred --CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCC-
Q 043601 400 --ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL- 473 (488)
Q Consensus 400 --~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~- 473 (488)
||+|||+|++++||.+++.||+||+||++|++| +||+++.++|+|.+++|++. ++.+++.++++|+++++...
T Consensus 405 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~ 483 (529)
T 2v7b_A 405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPS 483 (529)
T ss_dssp TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCC
T ss_pred cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcc
Confidence 578999999999999999999999999999999 99999999999999999998 55677889999998876432
Q ss_pred --CHHHHHHHHHhhcCC
Q 043601 474 --TKEDVQKFVANDSQL 488 (488)
Q Consensus 474 --~~~~i~~~~~~~l~~ 488 (488)
..++|+++++++|+.
T Consensus 484 ~~~~~~l~~~l~~~L~~ 500 (529)
T 2v7b_A 484 EILAEELKAFVKDRLAP 500 (529)
T ss_dssp HHHHHHHHHHHHTTSCT
T ss_pred hhHHHHHHHHHHhhcch
Confidence 246899999998863
No 21
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=6.9e-66 Score=525.34 Aligned_cols=443 Identities=20% Similarity=0.283 Sum_probs=369.8
Q ss_pred CC-HHHHHhhcccc-----CCCceEEEeCC---CCcceeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCcchHHHH
Q 043601 27 LS-MVHFLFRNSAS-----YGSKSALIDAD---SGESLTFSQFKSIVIKVSHGFRHL-GVTKHDVVLIFAPNSIQFPICL 96 (488)
Q Consensus 27 ~~-l~~~l~~~a~~-----~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~n~~~~~~~~ 96 (488)
++ +.++|.++++. +|+++|+++.+ .++++||+||.++++++|++|++. |+++||+|+++++|++++++++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~ 116 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence 44 46889888888 99999998732 137899999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhcc-----CCCeEEEcccCcccCCCCcCCCCccchH
Q 043601 97 LGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDF-----NIPAVLLGSNHIVSPRGLRSSSNIVYFD 171 (488)
Q Consensus 97 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (488)
|||+++|++++|+++.++.+++.++++.++++++|++++....+... ....++..... .......++
T Consensus 117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 188 (570)
T 3c5e_A 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK--------SCDGWLNFK 188 (570)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSS--------CCTTSEEHH
T ss_pred HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEeccc--------CccccccHH
Confidence 99999999999999999999999999999999999998876655431 11222221110 112233566
Q ss_pred HHHhhcCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHH
Q 043601 172 ELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSF 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (488)
+++.... .........++++++|+|||||||.||+|++||. ++........ ..+...++++++...|++|..++..
T Consensus 189 ~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~ 264 (570)
T 3c5e_A 189 KLLNEAS--TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILC 264 (570)
T ss_dssp HHHHHSC--SCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHH
T ss_pred HHhhccc--ccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHH
Confidence 6654433 2222344678999999999999999999999999 4442112222 4556788999999999999999866
Q ss_pred HHHHHhhCCceEEEcC--CCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHH
Q 043601 252 VVYAQLQKGNCVVSMR--KFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEEC 329 (488)
Q Consensus 252 ~~~~~l~~G~~~~~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~ 329 (488)
.++.++..|+++++.+ .+++..+++.++++++|+++++|+++..+++. .....++++||.+++||+++++++.++|
T Consensus 265 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--~~~~~~~~~lr~i~~gGe~l~~~~~~~~ 342 (570)
T 3c5e_A 265 SLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ--DLSSYKFPHLQNCVTVGESLLPETLENW 342 (570)
T ss_dssp TTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS--CTTTCCCTTCCEEEEESSCCCHHHHHHH
T ss_pred HHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc--cccccccccceEEEEcCCcCCHHHHHHH
Confidence 7888999999999886 68999999999999999999999999999875 2344568999999999999999999999
Q ss_pred HhhCCCCeEEeccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEe-----cC-----
Q 043601 330 SKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVR-----GP----- 399 (488)
Q Consensus 330 ~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~-----g~----- 399 (488)
.+.++ +++++.||+||++..++..... ....+++|+|+++++++|+| +++++++.|+.|||+++ |+
T Consensus 343 ~~~~g-~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~G 418 (570)
T 3c5e_A 343 RAQTG-LDIRESYGQTETGLTCMVSKTM--KIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSG 418 (570)
T ss_dssp HHHHS-CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCE
T ss_pred HHHhC-CchhhccchhhcccceecCccc--ccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhcc
Confidence 99885 8999999999998665543322 35678899999999999999 57999999999999998 53
Q ss_pred ---------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceE
Q 043601 400 ---------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVP 461 (488)
Q Consensus 400 ---------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~ 461 (488)
||+|||+|++++||++++.||+||+||++|++| +||++|.++|+|.+++|++.+++..++.+
T Consensus 419 Y~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~ 498 (570)
T 3c5e_A 419 YVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498 (570)
T ss_dssp ETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred ccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEE
Confidence 688999999999999999999999999999999 99999999999999999999988888999
Q ss_pred EEEEEeCCCC--CC---CHHHHHHHHHhhcC
Q 043601 462 IAYVVRSPNS--SL---TKEDVQKFVANDSQ 487 (488)
Q Consensus 462 ~~~v~~~~~~--~~---~~~~i~~~~~~~l~ 487 (488)
+++|+++++. .. ..++|+++|+++|+
T Consensus 499 ~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~ 529 (570)
T 3c5e_A 499 KAFVVLASQFLSHDPEQLTKELQQHVKSVTA 529 (570)
T ss_dssp EEEEEECGGGTTSCHHHHHHHHHHHHHHHSC
T ss_pred EEEEEECCcccCcchHHHHHHHHHHHHhhCc
Confidence 9999987653 11 25789999988876
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.1e-66 Score=522.72 Aligned_cols=434 Identities=17% Similarity=0.225 Sum_probs=357.1
Q ss_pred CCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeE
Q 043601 27 LSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106 (488)
Q Consensus 27 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (488)
.|+.++|.++++++|+++|+.+. ++++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCCeEEEcccCcccCCCCcCCCCccchHHHHhhc-CCCCCCCC
Q 043601 107 TTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELS-GNASNFPD 185 (488)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (488)
+|+++.++.+++.++++.++++++|++++....+... ....+.++.... ...+....
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 139 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI----------------------SLVSLSEIESAKLAEMPYERT 139 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS----------------------EEEEHHHHHHHHHHTCCCCCS
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccccccC----------------------cccchhhhhhcccccCCcccC
Confidence 9999999999999999999999999987653222110 111222221111 00122233
Q ss_pred CCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEE
Q 043601 186 VSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVS 265 (488)
Q Consensus 186 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 265 (488)
....++++++|+|||||||.||+|++||+++.+..........+...++++++...|++|..++ ..++.++..|+++++
T Consensus 140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~ 218 (521)
T 3l8c_A 140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFA 218 (521)
T ss_dssp SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEE
T ss_pred CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEE
Confidence 4567899999999999999999999999999876333222222556788999999999998887 678888999999999
Q ss_pred cCC---CCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEecc
Q 043601 266 MRK---FDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGY 342 (488)
Q Consensus 266 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 342 (488)
.+. .++..+++.+.++++|++.++|+++..+... ......++++||.+++||+++++++.+++.+.|+++++++.|
T Consensus 219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y 297 (521)
T 3l8c_A 219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS-DDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY 297 (521)
T ss_dssp CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS-TTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh-hccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence 875 3899999999999999999999999998876 555567789999999999999999999999999779999999
Q ss_pred CcccccccccccCCCC---CCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC--------------------
Q 043601 343 GMTETCGVVTVENPLL---GVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP-------------------- 399 (488)
Q Consensus 343 G~tE~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~-------------------- 399 (488)
|+||+++.++...... ......++|+|++++.++|+| +++++++.|+.|||+|+|+
T Consensus 298 G~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 376 (521)
T 3l8c_A 298 GPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTF 376 (521)
T ss_dssp CCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEE
T ss_pred CccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCC
Confidence 9999987665432211 123556899999999999999 6899999999999999984
Q ss_pred ----CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCC-CCceEEEEEEeCCCC
Q 043601 400 ----ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPE-AGEVPIAYVVRSPNS 471 (488)
Q Consensus 400 ----~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~ 471 (488)
||+|||+|++++||++++.||+||+||++|++| +||++|.++|.|.+++|++.++.. +++.++++|+++++.
T Consensus 377 ~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~ 456 (521)
T 3l8c_A 377 KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGV 456 (521)
T ss_dssp TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTS
T ss_pred CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcc
Confidence 688999999999999999999999999999999 999999999999999999886544 457899999998864
Q ss_pred CCC-------HHHHHHHHHhhcC
Q 043601 472 SLT-------KEDVQKFVANDSQ 487 (488)
Q Consensus 472 ~~~-------~~~i~~~~~~~l~ 487 (488)
..+ .++|+++|+++|+
T Consensus 457 ~~~~~~~~~~~~~l~~~l~~~l~ 479 (521)
T 3l8c_A 457 KERFDRELELTKAIKASVKDHMM 479 (521)
T ss_dssp GGGCSSHHHHHHHHHHHSGGGSC
T ss_pred ccccccchhhHHHHHHHHHhhCc
Confidence 321 5789999998886
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.3e-65 Score=527.08 Aligned_cols=442 Identities=23% Similarity=0.288 Sum_probs=371.0
Q ss_pred CCCCCCCCCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHH
Q 043601 20 VLPQDPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGV 99 (488)
Q Consensus 20 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 99 (488)
.++++ +|+.++|.++++ |+++|+++. ++++||+||+++++++|++|+++|+++|++|+++++|++++++++|||
T Consensus 22 ~~~~~--~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~ 95 (617)
T 3rg2_A 22 GYWQD--LPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFAL 95 (617)
T ss_dssp TSCCC--CCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCCc--CCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 34444 899999999988 999999998 789999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccH--------HHHhc--cCCCeEEEcccCcccCCCCcCCCCccc
Q 043601 100 IAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELW--------ERVKD--FNIPAVLLGSNHIVSPRGLRSSSNIVY 169 (488)
Q Consensus 100 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (488)
+++|+++||+++.++.+++.++++.+++++++++.... ..+.. .....+..... .....
T Consensus 96 l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 164 (617)
T 3rg2_A 96 LKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND-----------SGEHN 164 (617)
T ss_dssp HHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETC-----------CSTTB
T ss_pred HhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccc-----------ccccc
Confidence 99999999999999999999999999999999987653 11111 11222222211 11122
Q ss_pred hHHHHhhcCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhH
Q 043601 170 FDELIELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGL 249 (488)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (488)
+.+...... .........++++++|+|||||||.||+|+++|.++.+. .......+...+++++++.+|++|.+++
T Consensus 165 ~~~~~~~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~--~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 240 (617)
T 3rg2_A 165 LQDAINHPA--EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYS--VRRSVEICQFTQQTRYLCAIPAAHNYAM 240 (617)
T ss_dssp HHHHHHSCC--SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHH--HHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred hhhhhcccc--cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHH--HHHHHHhcCCCCcceEEEeccchhhhhh
Confidence 333333222 223334556789999999999999999999999999887 4445566778899999999999999887
Q ss_pred HH-HHHHHhhCCceEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCc-cCCCCCCCccEEEEccCCCcHHHHH
Q 043601 250 SF-VVYAQLQKGNCVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSL-VKKFDLSSLKGIGSGAAPLRKELVE 327 (488)
Q Consensus 250 ~~-~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~-~~~~~l~~lr~v~~~G~~l~~~~~~ 327 (488)
.. .++.++..|+++++.+..++..+++.++++++|++.++|+++..+++.... ....++++||.+++|||++++++.+
T Consensus 241 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 320 (617)
T 3rg2_A 241 SSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAA 320 (617)
T ss_dssp HSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHH
T ss_pred hHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHH
Confidence 53 688999999999999889999999999999999999999999999875221 1234789999999999999999999
Q ss_pred HHHhhCCCCeEEeccCcccccccccccCCCCCCCCCCceeecC-CCceEEEEeCCCCCCCCCCCcceEEEecC-------
Q 043601 328 ECSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLV-AGVEAQIVCVDTLKPLPPNQVGELWVRGP------- 399 (488)
Q Consensus 328 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~d~~~~~~~~~g~~Gel~v~g~------- 399 (488)
+|.+.++ +++++.||+||++..++.... .......++|+|+ ++..++|+| +++++++.|+.|||+|+|+
T Consensus 321 ~~~~~~~-~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~ 397 (617)
T 3rg2_A 321 RIPAEIG-CQLQQVFGMAEGLVNYTRLDD-SAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYY 397 (617)
T ss_dssp HHHHHTC-SEEEEEEEETTEEEEECCTTS-CHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCT
T ss_pred HHHHHhC-CcEEEEeccCcceeecccCCC-cccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhc
Confidence 9999996 999999999999754443221 1112234689997 788999999 6899999999999999986
Q ss_pred --------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEE
Q 043601 400 --------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPI 462 (488)
Q Consensus 400 --------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~ 462 (488)
||+|||+|++++||.++++||+||+||++|++| +||++|.++|+|.+++|++.+++..++.++
T Consensus 398 ~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~ 477 (617)
T 3rg2_A 398 KSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSC 477 (617)
T ss_dssp TCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred CChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEE
Confidence 588999999999999999999999999999999 999999999999999999999888889999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh-hcC
Q 043601 463 AYVVRSPNSSLTKEDVQKFVAN-DSQ 487 (488)
Q Consensus 463 ~~v~~~~~~~~~~~~i~~~~~~-~l~ 487 (488)
++|+..+ ..+.+++++++++ .|+
T Consensus 478 a~vv~~~--~~~~~~l~~~l~~~~lp 501 (617)
T 3rg2_A 478 AYLVVKE--PLRAVQVRRFLREQGIA 501 (617)
T ss_dssp EEEEESS--CCCHHHHHHHHHTTTCC
T ss_pred EEEEeCC--CCCHHHHHHHHHhCCCc
Confidence 9999876 4688999999998 465
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=6.1e-65 Score=521.73 Aligned_cols=407 Identities=18% Similarity=0.193 Sum_probs=342.3
Q ss_pred CCCCCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcC
Q 043601 24 DPNLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIG 103 (488)
Q Consensus 24 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (488)
.++.|+.++|.++++++|+++|+++. ++++||+||.++++++|++|+++|+++|++|+++++|++++++++|||+++|
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaG 101 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSG 101 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 34579999999999999999999997 7899999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCCeEEEcccCcccCCCCcCCCCccchHHHHhhcCCCCCC
Q 043601 104 GIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNF 183 (488)
Q Consensus 104 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (488)
+++||++|.++.+++.+++++++++++++++........ ..... .... .......
T Consensus 102 a~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~--~~~~~--------------------~~~~---~~~~~~~ 156 (620)
T 4dg8_A 102 HHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG--LPCVP--------------------VRHL---PAAPASV 156 (620)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT--SCEEE--------------------GGGC---CCCCCCS
T ss_pred CEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccC--Cceee--------------------eccC---CcCCccc
Confidence 999999999999999999999999999976543221111 01110 0000 0000112
Q ss_pred CCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceE
Q 043601 184 PDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCV 263 (488)
Q Consensus 184 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 263 (488)
......++++++|+|||||||.||+|+++|.++.+.... ...+...++++++...|++|..++ ..++.++..|+++
T Consensus 157 ~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~---~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~ 232 (620)
T 4dg8_A 157 ARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG---QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCC 232 (620)
T ss_dssp SCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS---CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEE
T ss_pred cCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH---HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEE
Confidence 223456899999999999999999999999999876322 345567889999999999999998 6789999999999
Q ss_pred EEcC--CCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEec
Q 043601 264 VSMR--KFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQG 341 (488)
Q Consensus 264 ~~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~ 341 (488)
++.+ .+++..+++.++++++|+++++|+++..+++. ....+++||.+++|||++++++.+++.+.++++++++.
T Consensus 233 v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~----~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 308 (620)
T 4dg8_A 233 VLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL----DPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNG 308 (620)
T ss_dssp EECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH----CGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred EeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc----ChhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEee
Confidence 9964 57999999999999999999999999999875 23468899999999999999999999988877999999
Q ss_pred cCcccccccccccCC--CCCCCCCCceeecCCCceEEEEeCCCCCC-CCCCCcceEEEecC-------------------
Q 043601 342 YGMTETCGVVTVENP--LLGVQNSGSTGTLVAGVEAQIVCVDTLKP-LPPNQVGELWVRGP------------------- 399 (488)
Q Consensus 342 YG~tE~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~i~d~~~~~~-~~~g~~Gel~v~g~------------------- 399 (488)
||+||++..++.... ........++|+|++++.++|+|. ++++ ++.|+.|||+|+|+
T Consensus 309 YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~ 387 (620)
T 4dg8_A 309 YGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVE 387 (620)
T ss_dssp ECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEE
T ss_pred EchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccccCCChhhhhhhhcc
Confidence 999999876654322 122345678999999999999995 5555 89999999999875
Q ss_pred ---------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEe
Q 043601 400 ---------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVR 467 (488)
Q Consensus 400 ---------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~ 467 (488)
||+|||+|++++||.++++||+||+||++|++| +||++|.+||+|.+++|++.+++..++ ++++++.
T Consensus 388 ~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~ 466 (620)
T 4dg8_A 388 LPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTG 466 (620)
T ss_dssp EEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEE
T ss_pred CCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEec
Confidence 489999999999999999999999999999999 999999999999999999988764444 4444444
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.3e-65 Score=512.80 Aligned_cols=437 Identities=25% Similarity=0.336 Sum_probs=353.3
Q ss_pred CCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeE
Q 043601 27 LSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIA 106 (488)
Q Consensus 27 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~ 106 (488)
||+.++|.++++++|+++|+++. ++++||+||+++++++|++|++. +||+|+++++|++++++++|||+++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 75 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI 75 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 57889999999999999999987 78999999999999999999986 89999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccC----CCeEEEcccCcccCCCCcCCCCcc-chHHHHhhcCCCC
Q 043601 107 TTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFN----IPAVLLGSNHIVSPRGLRSSSNIV-YFDELIELSGNAS 181 (488)
Q Consensus 107 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 181 (488)
+|+++.++.+++.++++.++++++|++.+......... ...+............ ....... ..+..... ....
T Consensus 76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 153 (501)
T 3ipl_A 76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDN-TMGIQYDTSNETVVPK-ESPS 153 (501)
T ss_dssp EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC----------------------------------CCHH
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeeccccccccc-ccccccccchhhcccc-CCcc
Confidence 99999999999999999999999999976544332110 0000000000000000 0000000 00000000 0000
Q ss_pred CCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCc
Q 043601 182 NFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGN 261 (488)
Q Consensus 182 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~ 261 (488)
........++++++|+|||||||.||+|++||.++.+. .......+...+++++++.+|++|.+++ ..++.++..|+
T Consensus 154 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~--~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~ 230 (501)
T 3ipl_A 154 NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYAS--AIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGF 230 (501)
T ss_dssp HHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHH--HHHHHHHTCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTC
T ss_pred cccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHH--HHHHHHhhCCCccCEEEEeCcHHHHHHH-HHHHHHHHcCc
Confidence 11123457899999999999999999999999999887 3445566778899999999999999998 56888999999
Q ss_pred eEEEcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEec
Q 043601 262 CVVSMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQG 341 (488)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~ 341 (488)
++++.+++++..+++.++++++|+++++|+++..+++. .... ..+||.+++||+++++++.+.+.+. ++++++.
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~---~~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~ 304 (501)
T 3ipl_A 231 TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQ-GLHE---PYNLQKILLGGAKLSATMIETALQY--NLPIYNS 304 (501)
T ss_dssp EEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHH-TCCS---CTTCCEEEECSSCCCHHHHHHHHHT--TCCEEEE
T ss_pred eEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhc-CCCC---cCcccEEEEeCCCCCHHHHHHHHHh--CCCEecc
Confidence 99999999999999999999999999999999999987 3222 2289999999999999999999884 4999999
Q ss_pred cCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC-------------------Ccc
Q 043601 342 YGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP-------------------ILM 402 (488)
Q Consensus 342 YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~-------------------~~~ 402 (488)
||+||+++.++............++|+|+++++++|+|++ .|+.|||+|+|+ ||+
T Consensus 305 YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~ 378 (501)
T 3ipl_A 305 FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFN 378 (501)
T ss_dssp EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEE
T ss_pred ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcchhcCCcee
Confidence 9999998765554433223466789999999999999954 467799999987 388
Q ss_pred ccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHH
Q 043601 403 PGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQ 479 (488)
Q Consensus 403 tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 479 (488)
|||+|++++||.+++.||+||+||++|++| +||+++.++|+|.+++|++.+++..++.++++|+... ..+.++++
T Consensus 379 TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~--~~~~~~l~ 456 (501)
T 3ipl_A 379 TGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES--DISKAQLI 456 (501)
T ss_dssp EEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHHHHH
T ss_pred cCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC--CCCHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999888999999998743 46899999
Q ss_pred HHHHhhcC
Q 043601 480 KFVANDSQ 487 (488)
Q Consensus 480 ~~~~~~l~ 487 (488)
++|+++|+
T Consensus 457 ~~l~~~L~ 464 (501)
T 3ipl_A 457 AYLSKHLA 464 (501)
T ss_dssp HHHHHHSC
T ss_pred HHHHhhCc
Confidence 99999986
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.2e-65 Score=513.54 Aligned_cols=423 Identities=26% Similarity=0.368 Sum_probs=352.3
Q ss_pred CCCHHHHHhhccccCCC-ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCC
Q 043601 26 NLSMVHFLFRNSASYGS-KSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGG 104 (488)
Q Consensus 26 ~~~l~~~l~~~a~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (488)
-+|+.+.|.++++++|+ ++|+++. ++++||+||.++++++|+.|. .|++|+++++|++++++++|||+++|+
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga 93 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGV 93 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 36788999999999997 9999997 799999999999999998875 378999999999999999999999999
Q ss_pred eEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCCeEEEcccCcccCCCCcCCCCccchHHHHhhcCCCCCCC
Q 043601 105 IATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFP 184 (488)
Q Consensus 105 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (488)
+++|++|.++.+++.+++++++++++|++.+............+.+.. ... ....
T Consensus 94 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-----------------------~~~--~~~~ 148 (505)
T 3nyq_A 94 AAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDV-----------------------RAR--GAVP 148 (505)
T ss_dssp CEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCT-----------------------TCC--CCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccccc-----------------------ccc--cCCC
Confidence 999999999999999999999999999986521100000011111000 000 1122
Q ss_pred CCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEE
Q 043601 185 DVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVV 264 (488)
Q Consensus 185 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 264 (488)
.....++++++|+|||||||.||+|++||.++.+. .......+...+++++++.+|++|..++...++.++..|++++
T Consensus 149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~--~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (505)
T 3nyq_A 149 EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATT--LDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVR 226 (505)
T ss_dssp CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH--HHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHH--HHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence 33456789999999999999999999999999987 3445566778899999999999999998777899999999999
Q ss_pred EcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCcc--CCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEecc
Q 043601 265 SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLV--KKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGY 342 (488)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~--~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 342 (488)
+.+.+++..+++.+ ++++|+++++|+++..+++.+... ....++++|.+++||+++++++.+++.+.++ +++++.|
T Consensus 227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~~Y 304 (505)
T 3nyq_A 227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG-RRVIERY 304 (505)
T ss_dssp ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEEEE
T ss_pred ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC-Ceeeccc
Confidence 99999999999999 889999999999999998752211 1235678999999999999999999999886 8999999
Q ss_pred CcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCC---CCcceEEEecC--------------------
Q 043601 343 GMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPP---NQVGELWVRGP-------------------- 399 (488)
Q Consensus 343 G~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~---g~~Gel~v~g~-------------------- 399 (488)
|+||++..++..... ....+++|+|+++++++|+| +++++++. |+.|||+|+|+
T Consensus 305 G~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~ 381 (505)
T 3nyq_A 305 GMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED 381 (505)
T ss_dssp EETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTT
T ss_pred chhhcccccccCCCC--CCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCC
Confidence 999998766544332 45677899999999999999 57888876 89999999985
Q ss_pred -CccccceEEEccCCcEEEEccc-CcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCC-CCCC
Q 043601 400 -ILMPGDLGYFDEHGQLFIVDRI-KELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP-NSSL 473 (488)
Q Consensus 400 -~~~tGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-~~~~ 473 (488)
||+|||+|++++||.+++.||+ ||+||++|++| +||++|.++|+|.+++|++.+++..++.++++|++++ +...
T Consensus 382 g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~ 461 (505)
T 3nyq_A 382 GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPP 461 (505)
T ss_dssp SCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCC
T ss_pred CCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCC
Confidence 5889999999999999999997 59999999999 9999999999999999999999989999999999986 4567
Q ss_pred CHHHHHHHHHhhcC
Q 043601 474 TKEDVQKFVANDSQ 487 (488)
Q Consensus 474 ~~~~i~~~~~~~l~ 487 (488)
+.++|+++++++|+
T Consensus 462 ~~~~l~~~l~~~L~ 475 (505)
T 3nyq_A 462 ALGTLADHVAARLA 475 (505)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhhCC
Confidence 88999999999986
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=9.9e-64 Score=510.43 Aligned_cols=440 Identities=17% Similarity=0.194 Sum_probs=300.4
Q ss_pred CCCCCHHHHHhhccccCCCceEEEeCCC--------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHH
Q 043601 24 DPNLSMVHFLFRNSASYGSKSALIDADS--------GESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPIC 95 (488)
Q Consensus 24 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~ 95 (488)
.+++|+.++|.++|+++|+++|+++.+. ++++||+||+++++++|+.|.+.|+ +||+|+++++|+++++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 3458999999999999999999986421 2789999999999999999999999 799999999999999999
Q ss_pred HHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCCeEEEcccCcccCCCCcCCCCccchHHHHh
Q 043601 96 LLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIE 175 (488)
Q Consensus 96 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (488)
+|||+++|++++|+++.++.+++.+++++++++++|++++....+.......+. .. ....+.+...
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~ 161 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVL-DT-------------KNQSFIENLS 161 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEE-ET-------------TCHHHHHHHH
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceee-cc-------------cchhhhhhcc
Confidence 999999999999999999999999999999999999987654433111111111 10 0112222322
Q ss_pred hcCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhh------hhhhcCCCCcEEEEecchhhHHhH
Q 043601 176 LSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAM------DQELAGALDYVTLCVLPMFHVFGL 249 (488)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 249 (488)
... .........++++++|+|||||||.||+|++||.++.+....... .........+++++..+++|..++
T Consensus 162 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (562)
T 3ite_A 162 TQD--TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI 239 (562)
T ss_dssp HSC--CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH
T ss_pred ccc--ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH
Confidence 222 222233456788999999999999999999999999876332111 112345677899999999988877
Q ss_pred HHHHHHHhhCCceEEEcCCCC-HHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHH
Q 043601 250 SFVVYAQLQKGNCVVSMRKFD-LETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEE 328 (488)
Q Consensus 250 ~~~~~~~l~~G~~~~~~~~~~-~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~ 328 (488)
..++.++..|+++++.+... +..+++.++++++|+++++|+++..+... ..++++||.+++||+++++++.+.
T Consensus 240 -~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-----~~~~~~lr~~~~gG~~l~~~~~~~ 313 (562)
T 3ite_A 240 -GEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-----PEDAPHLVYLGVGGEKMTPRTQQI 313 (562)
T ss_dssp -HHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----GGGSTTCCEEEEESSCCCHHHHHH
T ss_pred -HHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----ccccCceEEEEEecCCCCHHHHHH
Confidence 67788899999999876543 57788999999999999999988876432 346889999999999999999999
Q ss_pred HHhhCCCCeEEeccCcccccccccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC---------
Q 043601 329 CSKNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--------- 399 (488)
Q Consensus 329 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~--------- 399 (488)
|.+.++ +.+++.||+||++..++...... .....++|+|++++.++++|++++++++.|+.|||+|+|+
T Consensus 314 ~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~ 391 (562)
T 3ite_A 314 WSSSDR-VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNR 391 (562)
T ss_dssp HTTCSS-CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSC
T ss_pred HhhCCC-cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCC
Confidence 999876 99999999999987666543322 3556789999999999999988899999999999999986
Q ss_pred -------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcC-CCeeeeEEEeecCCCCCceEE
Q 043601 400 -------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSH-PEILDAVVIPFPDPEAGEVPI 462 (488)
Q Consensus 400 -------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~-~~v~~~~v~~~~~~~~~~~~~ 462 (488)
||+|||+|++|+||++++.||+||+||++|++| +||++|.++ +.+.+++|++.+++..++..+
T Consensus 392 p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~ 471 (562)
T 3ite_A 392 PDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFL 471 (562)
T ss_dssp TTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC---------------------------------------------
T ss_pred ccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEE
Confidence 799999999999999999999999999999999 999999998 788899999988888777766
Q ss_pred EEEEeCCCCCCC-------------HHHHHHHHHhhcCC
Q 043601 463 AYVVRSPNSSLT-------------KEDVQKFVANDSQL 488 (488)
Q Consensus 463 ~~v~~~~~~~~~-------------~~~i~~~~~~~l~~ 488 (488)
+.++..++.... .++|+++|+++|+.
T Consensus 472 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~ 510 (562)
T 3ite_A 472 VSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPA 510 (562)
T ss_dssp ---------------------------------------
T ss_pred EEEEecccccccccccccccchhhHHHHHHHHHHhhCCc
Confidence 666655443322 34899999988863
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-62 Score=545.31 Aligned_cols=430 Identities=21% Similarity=0.260 Sum_probs=367.0
Q ss_pred CCCHHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCe
Q 043601 26 NLSMVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGI 105 (488)
Q Consensus 26 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (488)
..++.++|.++++++|+++|+++. ++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~ 540 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAA 540 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 468999999999999999999987 789999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCCeEEEcccCcccCCCCcCCCCccchHHHHhhcCCCCCCCC
Q 043601 106 ATTANPVYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDELIELSGNASNFPD 185 (488)
Q Consensus 106 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (488)
+||++|.++.+++.++++++++++++++.+....+.........+..+. .... .. . ...+.
T Consensus 541 ~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~-~--~~~~~ 601 (1304)
T 2vsq_A 541 YLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDD---------------QTRF-EE-Q--ASDPA 601 (1304)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSC---------------GGGG-GS-C--SSCCC
T ss_pred EEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEecc---------------cccc-cc-c--cCCCC
Confidence 9999999999999999999999999999876544322211111111110 0000 00 1 11222
Q ss_pred CCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEE
Q 043601 186 VSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVS 265 (488)
Q Consensus 186 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 265 (488)
....++++++|+|||||||.||||+++|+++.+.. .....+...++++++...|++|..+. +.++.++..|+++++
T Consensus 602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~---~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~ 677 (1304)
T 2vsq_A 602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV---KHVDYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLII 677 (1304)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH---SSCCSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEE
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH---HHHHhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEE
Confidence 34578899999999999999999999999998652 23344567788999999999988777 788999999999999
Q ss_pred cCC---CCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEecc
Q 043601 266 MRK---FDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGY 342 (488)
Q Consensus 266 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 342 (488)
.+. .++..+.+.++++++|+++++|+++..+.+. . ...+++||.+++|||++++++.++|.+.+++.++++.|
T Consensus 678 ~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~-~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 753 (1304)
T 2vsq_A 678 ADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA-G---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCY 753 (1304)
T ss_dssp CCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH-C---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEE
T ss_pred CChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh-c---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeE
Confidence 864 6899999999999999999999999999875 2 22467899999999999999999999988778999999
Q ss_pred CcccccccccccCCCC--CCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC---------------------
Q 043601 343 GMTETCGVVTVENPLL--GVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--------------------- 399 (488)
Q Consensus 343 G~tE~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~--------------------- 399 (488)
|+||+++.++...... ......++|+|++++.++|+| +++++++.|+.|||+|+|+
T Consensus 754 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p 832 (1304)
T 2vsq_A 754 GPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENP 832 (1304)
T ss_dssp CCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECT
T ss_pred ChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCC
Confidence 9999987766543221 233456899999999999999 6899999999999999984
Q ss_pred ------CccccceEEEccCCcEEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCC
Q 043601 400 ------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPN 470 (488)
Q Consensus 400 ------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~ 470 (488)
||+|||+|++++||.++++||+||+||++|++| |||.+|.++|+|.+++|++.++..+++.++++|+.++
T Consensus 833 ~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~- 911 (1304)
T 2vsq_A 833 FKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT- 911 (1304)
T ss_dssp TSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS-
T ss_pred CCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC-
Confidence 688999999999999999999999999999999 9999999999999999999988888889999999765
Q ss_pred CCCCHHHHHHHHHhhcC
Q 043601 471 SSLTKEDVQKFVANDSQ 487 (488)
Q Consensus 471 ~~~~~~~i~~~~~~~l~ 487 (488)
..+.++++++++++||
T Consensus 912 -~~~~~~l~~~l~~~Lp 927 (1304)
T 2vsq_A 912 -QLSAEDVKAHLKKQLP 927 (1304)
T ss_dssp -SSCHHHHHHHHHHHSC
T ss_pred -CCCHHHHHHHHHHhCh
Confidence 4688999999999987
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.2e-64 Score=517.69 Aligned_cols=443 Identities=21% Similarity=0.270 Sum_probs=362.0
Q ss_pred CCCCHHHHHhhccccCCCceEEEeCC--CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHc
Q 043601 25 PNLSMVHFLFRNSASYGSKSALIDAD--SGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAI 102 (488)
Q Consensus 25 ~~~~l~~~l~~~a~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~ 102 (488)
+.+|+.++|.++++++|+++|+++.+ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 34899999999999999999997642 2489999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCC---CHHHHHHHHhhcCCeEEEEccccHHHHhccCCC-eEEEcccCcccCCCCcCCCCccchHHHHhhcC
Q 043601 103 GGIATTANPVY---TVSELSKQVKDSSPKLVVTVPELWERVKDFNIP-AVLLGSNHIVSPRGLRSSSNIVYFDELIELSG 178 (488)
Q Consensus 103 G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (488)
|++++|++|.+ +.+++.++++.+++++++++.+....+...... ..... .......+.+.....
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 156 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFL------------KIPAIALESIELNRS 156 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEET------------TEEEEEGGGCCGGGG
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccc------------ccceeechhcccccc
Confidence 99999999988 457899999999999999998876665433200 00000 000000111100000
Q ss_pred CCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhh
Q 043601 179 NASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQ 258 (488)
Q Consensus 179 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (488)
.........++++++|+|||||||.||+|++||.++.+. .......+...+++++++.+|++|..++...++.+++
T Consensus 157 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~--~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 232 (590)
T 3kxw_A 157 --SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDN--LNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIY 232 (590)
T ss_dssp --GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHH--HHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHH
T ss_pred --ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHH--HHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHh
Confidence 122234567889999999999999999999999999988 4445566778899999999999999998656889999
Q ss_pred CCceEEEcCCC----CHHHHHHHHHhcCccEEEecHHHHHHHHhcCCc--cCCCCCCCccEEEEccCCCcHHHHHHHHhh
Q 043601 259 KGNCVVSMRKF----DLETALRAIEKYRVTHWWVVPPIILALAKNVSL--VKKFDLSSLKGIGSGAAPLRKELVEECSKN 332 (488)
Q Consensus 259 ~G~~~~~~~~~----~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~ 332 (488)
.|+++++.+++ ++..+++.++++++|++.++|+.+..+++.+.. ....++++||.+++||+++++++.++|.+.
T Consensus 233 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~ 312 (590)
T 3kxw_A 233 GGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQA 312 (590)
T ss_dssp HTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred cCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHH
Confidence 99999998764 789999999999999999999999998875322 235678999999999999999999999998
Q ss_pred CC-----CCeEEeccCcccccccccccCCC-------------------------CCCCCCCceeecCCCceEEEEeCCC
Q 043601 333 LP-----TVTVFQGYGMTETCGVVTVENPL-------------------------LGVQNSGSTGTLVAGVEAQIVCVDT 382 (488)
Q Consensus 333 ~~-----~~~i~~~YG~tE~~~~~~~~~~~-------------------------~~~~~~~~~g~~~~~~~~~i~d~~~ 382 (488)
|+ +..+++.||+||++..++..... .......++|+|+++ ++|+|+++
T Consensus 313 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~ 390 (590)
T 3kxw_A 313 FKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDT 390 (590)
T ss_dssp HGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTT
T ss_pred HHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCC
Confidence 74 35799999999999876654321 111234578999998 88899877
Q ss_pred CCCCCCCCcceEEEecC-----------------------------CccccceEEEccCCcEEEEcccCcceeeCcEEe-
Q 043601 383 LKPLPPNQVGELWVRGP-----------------------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV- 432 (488)
Q Consensus 383 ~~~~~~g~~Gel~v~g~-----------------------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v- 432 (488)
+++++.|+.|||+|+|+ ||+|||+|+++ ||.+++.||+||+||++|++|
T Consensus 391 ~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~ 469 (590)
T 3kxw_A 391 LIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHY 469 (590)
T ss_dssp CCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTH
T ss_pred CcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecC
Confidence 99999999999999983 78999999998 999999999999999999999
Q ss_pred --eHhHHH-hcCCCee--eeEEEeecCCCCCceEEEEEEeCCCC--CCCHHHHHHHHHhhcC
Q 043601 433 --ELEGVL-VSHPEIL--DAVVIPFPDPEAGEVPIAYVVRSPNS--SLTKEDVQKFVANDSQ 487 (488)
Q Consensus 433 --~ie~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~i~~~~~~~l~ 487 (488)
+||.++ ..+|.|. +++|++.+++. ++.++++++.+++. ..+.++++++++++|+
T Consensus 470 p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~ 530 (590)
T 3kxw_A 470 PQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVY 530 (590)
T ss_dssp HHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHH
Confidence 999999 7889998 89999988765 67888899887763 4556788888887653
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=4.4e-62 Score=500.73 Aligned_cols=435 Identities=21% Similarity=0.246 Sum_probs=356.0
Q ss_pred CCCHHHHHhhccccCCCceEEEeCC-CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCC
Q 043601 26 NLSMVHFLFRNSASYGSKSALIDAD-SGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGG 104 (488)
Q Consensus 26 ~~~l~~~l~~~a~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (488)
..|+.++|.++++.+|+.+++.+.. .++++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 20 ~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 99 (576)
T 3gqw_A 20 FPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGL 99 (576)
T ss_dssp CSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCC
Confidence 3699999999999999988886532 237999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCC-------HHHHHHHHhhcCCeEEEEccccHHHHhccCC---CeEEEcccCcccCCCCcCCCCccchHHHH
Q 043601 105 IATTANPVYT-------VSELSKQVKDSSPKLVVTVPELWERVKDFNI---PAVLLGSNHIVSPRGLRSSSNIVYFDELI 174 (488)
Q Consensus 105 ~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (488)
+++|+++.++ .+++.++++.++++++|++++....+..... ....+ ... ..
T Consensus 100 ~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~------------------~~~-~~ 160 (576)
T 3gqw_A 100 VAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVL------------------SHA-WF 160 (576)
T ss_dssp EEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEE------------------EHH-HH
T ss_pred eEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceec------------------chh-hh
Confidence 9999999998 7899999999999999999887665543210 11110 011 11
Q ss_pred hhcCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhh-hhcCCCCcEEEEecchhhHHhHHHHH
Q 043601 175 ELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQ-ELAGALDYVTLCVLPMFHVFGLSFVV 253 (488)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (488)
. .............++++++|+|||||||.||+|+++|+++.+... .... .+...+++++++.+|++|..++...+
T Consensus 161 ~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~--~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 237 (576)
T 3gqw_A 161 K-ALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLR--AISHDGIKLRPGDRCVSWLPFYHDMGLVGFL 237 (576)
T ss_dssp H-TSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHH--HHHHTTSCCCTTCCEEECCCTTSHHHHHHHT
T ss_pred h-cccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHH--HhhhcccCCCCcceEEEcCCccccccHHHHH
Confidence 1 111122233345689999999999999999999999999987732 2322 25678899999999999999997778
Q ss_pred HHHhhCCceEEEcCC----CCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCc--cCCCCCCCccEEEEccCCCcHHHHH
Q 043601 254 YAQLQKGNCVVSMRK----FDLETALRAIEKYRVTHWWVVPPIILALAKNVSL--VKKFDLSSLKGIGSGAAPLRKELVE 327 (488)
Q Consensus 254 ~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~v~~~G~~l~~~~~~ 327 (488)
+.++..|+++++... +++..+++.++++++|+++++|+++..+.+.... ....++++||.+++||+++++++.+
T Consensus 238 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~ 317 (576)
T 3gqw_A 238 LTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLH 317 (576)
T ss_dssp HHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHH
Confidence 888999999998864 5788999999999999999999999888765322 2346789999999999999999999
Q ss_pred HHHhhCC-----CCeEEeccCcccccccccccCCCCCC--------------------------CCCCceeecCCCceEE
Q 043601 328 ECSKNLP-----TVTVFQGYGMTETCGVVTVENPLLGV--------------------------QNSGSTGTLVAGVEAQ 376 (488)
Q Consensus 328 ~~~~~~~-----~~~i~~~YG~tE~~~~~~~~~~~~~~--------------------------~~~~~~g~~~~~~~~~ 376 (488)
+|.+.|+ +..+++.||+||++..++........ ....++|+|++++.++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 397 (576)
T 3gqw_A 318 QFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIE 397 (576)
T ss_dssp HHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEE
T ss_pred HHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEE
Confidence 9999874 58999999999999877654322100 0112789999999999
Q ss_pred EEeCCCCCCCCCCCcceEEEecC--------------------CccccceEEEccCCcEEEEcccCcceeeCcEEe---e
Q 043601 377 IVCVDTLKPLPPNQVGELWVRGP--------------------ILMPGDLGYFDEHGQLFIVDRIKELIKCNGFQV---E 433 (488)
Q Consensus 377 i~d~~~~~~~~~g~~Gel~v~g~--------------------~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---~ 433 (488)
|+| +++++++.|+.|||+|+|+ ||+|||+|++ +||.+++.||+||+||++|++| +
T Consensus 398 i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~e 475 (576)
T 3gqw_A 398 IRN-EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQD 475 (576)
T ss_dssp EEC-TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHH
T ss_pred EEC-CCCCCCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHH
Confidence 999 7999999999999999997 5899999999 7999999999999999999999 9
Q ss_pred HhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhc
Q 043601 434 LEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDS 486 (488)
Q Consensus 434 ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l 486 (488)
||+++.+||+|.+++|++...+. +.+.++++...+.....++++++++++|
T Consensus 476 IE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l 526 (576)
T 3gqw_A 476 IEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARI 526 (576)
T ss_dssp HHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHH
Confidence 99999999999999888877653 4456666655544445567777777665
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=7.3e-57 Score=451.65 Aligned_cols=377 Identities=21% Similarity=0.251 Sum_probs=297.5
Q ss_pred CCCCCHHHHHhhccccCCCceEEEeCC-----CC--cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHH
Q 043601 24 DPNLSMVHFLFRNSASYGSKSALIDAD-----SG--ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICL 96 (488)
Q Consensus 24 ~~~~~l~~~l~~~a~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 96 (488)
-+++|+.++|.++++++|+++|+++.+ ++ +++||+||.++++++|++|+++|+ +||+|+++++|++++++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~ 99 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF 99 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence 356899999999999999999998753 22 789999999999999999999996 9999999999999999999
Q ss_pred HHHHHcCCeEeecCC---CCCHHHHHHHHhhcCCeEEEEccccHHHHhccCCCeEEEcccCcccCCCCcCCCCccchHHH
Q 043601 97 LGVIAIGGIATTANP---VYTVSELSKQVKDSSPKLVVTVPELWERVKDFNIPAVLLGSNHIVSPRGLRSSSNIVYFDEL 173 (488)
Q Consensus 97 lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (488)
|||+++|+++||+++ .++.+++.++++.++++++|++.+....+........... ...+..++..
T Consensus 100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 167 (480)
T 3t5a_A 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGES------------PPSIIEVDLL 167 (480)
T ss_dssp HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------------------CCEEEEGGGS
T ss_pred HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcccccc------------ccceeEeccc
Confidence 999999999999999 7789999999999999999999987776654321110000 0000011110
Q ss_pred HhhcCCCCCCCCCCCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCC------CcEEEEecchhhHH
Q 043601 174 IELSGNASNFPDVSVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGAL------DYVTLCVLPMFHVF 247 (488)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 247 (488)
..... .........++++++|+|||||||.||+|++||.++.+.. ......+.... ++++++.+|++|..
T Consensus 168 ~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~--~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 243 (480)
T 3t5a_A 168 DLDAP--NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNF--EQLMSGYFADTDGIPPPNSALVSWLPFYHDM 243 (480)
T ss_dssp CTTCC-----CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHH--HHHHHHHCTTTTTCCCTTEEEEECCCTTSTT
T ss_pred ccccc--cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHH--HHHHHHhccccccCCCCCCeEEEeCCCcCcc
Confidence 00000 1223345677899999999999999999999999998873 33444455555 89999999999999
Q ss_pred hHHHHHHHHhhCCceEEEcCCC----CHHHHHHHHHhcCccEEEecHHHHHHHHhcC---CccCCCCCCCccEEEEccCC
Q 043601 248 GLSFVVYAQLQKGNCVVSMRKF----DLETALRAIEKYRVTHWWVVPPIILALAKNV---SLVKKFDLSSLKGIGSGAAP 320 (488)
Q Consensus 248 ~~~~~~~~~l~~G~~~~~~~~~----~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~---~~~~~~~l~~lr~v~~~G~~ 320 (488)
++...++.++..|+++++.++. ++..+++.++++++| +.++|+++..++... ......++++||.+++||++
T Consensus 244 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~ 322 (480)
T 3t5a_A 244 GLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSER 322 (480)
T ss_dssp HHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTT
T ss_pred HHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCc
Confidence 9877889999999999998753 889999999999999 788898888877641 23345678999999999999
Q ss_pred CcHHHHHHHHhhCC-----CCeEEeccCcccccccccccCCCCC-----------------------CCCCCceeecCCC
Q 043601 321 LRKELVEECSKNLP-----TVTVFQGYGMTETCGVVTVENPLLG-----------------------VQNSGSTGTLVAG 372 (488)
Q Consensus 321 l~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~~~~g~~~~~ 372 (488)
+++++.++|.+.|+ ++.+++.||+||++..++....... .....++|+|++
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~- 401 (480)
T 3t5a_A 323 VQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS- 401 (480)
T ss_dssp CCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-
T ss_pred CCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-
Confidence 99999999999984 4589999999999987766543211 123458999999
Q ss_pred ceEEEEeCCCCCCCCCCCcceEEEecC--------------------------------CccccceEEEccCCcEEEEcc
Q 043601 373 VEAQIVCVDTLKPLPPNQVGELWVRGP--------------------------------ILMPGDLGYFDEHGQLFIVDR 420 (488)
Q Consensus 373 ~~~~i~d~~~~~~~~~g~~Gel~v~g~--------------------------------~~~tGD~~~~~~~g~l~~~GR 420 (488)
++++|+|++++++++.|+.|||+|+|+ ||+|||+|+++ ||+|+|+||
T Consensus 402 ~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 402 PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 999999987799999999999999984 78999999996 999999998
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.5e-44 Score=354.48 Aligned_cols=293 Identities=19% Similarity=0.174 Sum_probs=248.1
Q ss_pred CCCC-CCEEEEEcccCCCCCCchhhhccHHHHHHhhHH-hhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEE
Q 043601 187 SVKQ-TDTAALLYSSGTTGVGKGAILTHKNFIASSLMT-AMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVV 264 (488)
Q Consensus 187 ~~~~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 264 (488)
...+ +++++|+|||||||.||+|++||.++.+..... .........++++++...|+.|..+....++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997663322 12233467889999999998776666577888899999999
Q ss_pred EcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCC--CCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEecc
Q 043601 265 SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKF--DLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGY 342 (488)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~--~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 342 (488)
+.+..++..+++.|+++++|+++++|+++..|++. ...... .+++||.+++|||++++++.+.|.+.|+ +++++.|
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y 238 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEV-FQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYNSF 238 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHH-HHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHH-HHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEecC
Confidence 99888999999999999999999999999999876 332333 3789999999999999999999999996 9999999
Q ss_pred Cccccccc-ccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC--------CccccceEEEccCC
Q 043601 343 GMTETCGV-VTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--------ILMPGDLGYFDEHG 413 (488)
Q Consensus 343 G~tE~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~--------~~~tGD~~~~~~~g 413 (488)
|+||+++. ...... .....+.|.+++.++|+|++++++++.|+.|||+|+|. ||+|||+|+++++|
T Consensus 239 G~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~~~~~~~y~TGDl~~~~~~g 313 (436)
T 3qov_A 239 GMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREMMPLIRYRTRDLTRILPGK 313 (436)
T ss_dssp EEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCCSSCCCSEEEEEEECEECSC
T ss_pred cchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcCCceEEEEEcCCEEEEcCCC
Confidence 99999544 332221 12237788889999999988999999999999999984 79999999999998
Q ss_pred ------c---EEEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCC----HHH
Q 043601 414 ------Q---LFIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLT----KED 477 (488)
Q Consensus 414 ------~---l~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~----~~~ 477 (488)
+ +++.||.||+||++|++| +||++|.++|+|.+++|++.+++..++.++++|+++ +...+ .++
T Consensus 314 c~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~ 392 (436)
T 3qov_A 314 CPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEK 392 (436)
T ss_dssp CTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHH
T ss_pred CCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHH
Confidence 5 699999999999999999 999999999999999999998888888999999998 65554 577
Q ss_pred HHHHHHhhcC
Q 043601 478 VQKFVANDSQ 487 (488)
Q Consensus 478 i~~~~~~~l~ 487 (488)
++++++++|+
T Consensus 393 l~~~l~~~l~ 402 (436)
T 3qov_A 393 IRRDIIRQLK 402 (436)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777653
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2e-44 Score=345.19 Aligned_cols=274 Identities=18% Similarity=0.231 Sum_probs=231.3
Q ss_pred CCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEEcCCC
Q 043601 190 QTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRKF 269 (488)
Q Consensus 190 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 269 (488)
.+++++|+|||||||.||+|++||+++.+. .......+...++|++++.+|++|.+|+ ..++.++..|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~--~~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAAS--AAMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHH--HHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHH--HHHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc
Confidence 368999999999999999999999999887 4445666778899999999999999998 6678888999999887652
Q ss_pred CHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCcHHHHHHHHhhCCCCeEEeccCcccccc
Q 043601 270 DLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGYGMTETCG 349 (488)
Q Consensus 270 ~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~ 349 (488)
...++.++++++|++.++|+++..+++. . ....++++||.+++||+++++++.+++.+. ++++++.||+||+++
T Consensus 113 --~~~~~~i~~~~~t~~~~~P~~l~~ll~~-~-~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~ 186 (358)
T 4gs5_A 113 --ANPLAGLDHADFDFVAMVPMQLQSILEN-S-ATSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVS 186 (358)
T ss_dssp --SCTTTTCSSCCCSEEEECHHHHHHHHHC-T-TTGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSS
T ss_pred --ccHHHHHHHhCCeEEEcChHHHHHhhcc-c-cccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccc
Confidence 2346778899999999999999999986 2 244578999999999999999999999875 489999999999988
Q ss_pred cccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC-----CccccceEEEccCCcEEEEcccCcc
Q 043601 350 VVTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP-----ILMPGDLGYFDEHGQLFIVDRIKEL 424 (488)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~-----~~~tGD~~~~~~~g~l~~~GR~~d~ 424 (488)
.++..... ....+.+|.+.|++.+.+.+ .|||+++|+ ||+|||+|++|+|| ++++||+||+
T Consensus 187 ~~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~~~g~~~TGDlg~~d~~g-~~~~GR~dd~ 252 (358)
T 4gs5_A 187 HVALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVTNGQTVQTNDLVEIHGNA-FQWIGRADNV 252 (358)
T ss_dssp EEEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGGTTCCEEEEEEEEECSSE-EEEEEEGGGE
T ss_pred eeeccccc--ccccceeeccCCCeEEEecC-----------cCceEEecccccCcceecCCccccccCc-eEEcccccCe
Confidence 77765443 45667899999999887643 399999975 89999999999988 6677999999
Q ss_pred eeeCcEEe---eHhHHH---hcCCCeeeeEEE-eecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhcC
Q 043601 425 IKCNGFQV---ELEGVL---VSHPEILDAVVI-PFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQ 487 (488)
Q Consensus 425 i~~~G~~v---~ie~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l~ 487 (488)
||++|++| +||++| .+||.|.+++|+ +.+++..++.++++|+.+++ ..+.++|+++|+++|+
T Consensus 253 Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~l~~~L~ 321 (358)
T 4gs5_A 253 INSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAEIRSRVS 321 (358)
T ss_dssp EEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHHHHHHSC
T ss_pred EEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHHHHhhCC
Confidence 99999999 999876 468999999876 56778888889888876543 4556889999999986
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=4.5e-43 Score=346.65 Aligned_cols=294 Identities=19% Similarity=0.179 Sum_probs=243.5
Q ss_pred CCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhH-HhhhhhhcCCCCcEEEEecch-hhHHhHHHHHHHHhhCCceEE
Q 043601 187 SVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLM-TAMDQELAGALDYVTLCVLPM-FHVFGLSFVVYAQLQKGNCVV 264 (488)
Q Consensus 187 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~G~~~~ 264 (488)
...++++++++|||||||.||+|++||.++...... ..........+++++++.+|+ +|..++ ...+.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence 456789999999999999999999999998766322 112234557789999999998 566666 56788899999999
Q ss_pred EcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCC--CCCccEEEEccCCCcHHHHHHHHhhCCCCeEEecc
Q 043601 265 SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFD--LSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGY 342 (488)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~--l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 342 (488)
+.+..++..+++.|+++++|+++++|+++..|++. ......+ ++++|.+++||+++++++.+.+.+.|+ +++++.|
T Consensus 165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~-~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y 242 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADE-IERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVDIY 242 (437)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHH-HHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHH-HHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEecC
Confidence 88888999999999999999999999999999876 2222232 579999999999999999999999885 9999999
Q ss_pred Cccccccc-ccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC--------CccccceEEEcc-C
Q 043601 343 GMTETCGV-VTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--------ILMPGDLGYFDE-H 412 (488)
Q Consensus 343 G~tE~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~--------~~~tGD~~~~~~-~ 412 (488)
|+||+++. ++..... .....+.|.+++.++|+|++++++++.|+.|||+|+|. ||+|||+|++++ +
T Consensus 243 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~~~~~~~y~TGDl~~~~~~~ 318 (437)
T 2y27_A 243 GLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEALPIIRYRTRDLTRLLPGT 318 (437)
T ss_dssp EETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSSCCCSEEEEEEECEECCS
T ss_pred CchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCcCCchhheeecCCEEEEeCCC
Confidence 99998432 3332221 11125677889999999987899999999999999973 899999999998 6
Q ss_pred CcE-----EEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCC---CCHHHHHHH
Q 043601 413 GQL-----FIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSS---LTKEDVQKF 481 (488)
Q Consensus 413 g~l-----~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~~~~~i~~~ 481 (488)
|++ ++.||+||+||++|++| +||+++.++|+|.+++|++.+++..++.++++|+++++.. .+.++++++
T Consensus 319 G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~ 398 (437)
T 2y27_A 319 ARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQA 398 (437)
T ss_dssp SSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHH
T ss_pred CCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHH
Confidence 985 89999999999999999 9999999999999999988877667789999999887643 345778888
Q ss_pred HHhhcC
Q 043601 482 VANDSQ 487 (488)
Q Consensus 482 ~~~~l~ 487 (488)
|+++|+
T Consensus 399 l~~~l~ 404 (437)
T 2y27_A 399 LAYDIK 404 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887663
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=9.9e-43 Score=344.81 Aligned_cols=294 Identities=19% Similarity=0.170 Sum_probs=242.4
Q ss_pred CCCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHH-hhhhhhcCCCCcEEEEecch-hhHHhHHHHHHHHhhCCceEE
Q 043601 187 SVKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMT-AMDQELAGALDYVTLCVLPM-FHVFGLSFVVYAQLQKGNCVV 264 (488)
Q Consensus 187 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~G~~~~ 264 (488)
...++++++++|||||||.||+|++||.++....... .........+++++++.+|+ +|..++ ...+.++..|++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVV 166 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEE
Confidence 4567899999999999999999999999987653221 12224567889999999998 456655 66788899999999
Q ss_pred EcCCCCHHHHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCC--CCCccEEEEccCCCcHHHHHHHHhhCCCCeEEecc
Q 043601 265 SMRKFDLETALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFD--LSSLKGIGSGAAPLRKELVEECSKNLPTVTVFQGY 342 (488)
Q Consensus 265 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~--l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 342 (488)
+.+..++..+++.|+++++|+++++|+++..|++. ......+ +++||.+++|||++++++.+.+.+.|+ +++++.|
T Consensus 167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~-~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y 244 (443)
T 2y4o_A 167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDE-MVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG-IDALDIY 244 (443)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHH-HHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEEEE
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHH-HHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEecc
Confidence 98888999999999999999999999999999876 2222222 589999999999999999999999885 9999999
Q ss_pred Cccccccc-ccccCCCCCCCCCCceeecCCCceEEEEeCCCCCCCCCCCcceEEEecC--------CccccceEEEccC-
Q 043601 343 GMTETCGV-VTVENPLLGVQNSGSTGTLVAGVEAQIVCVDTLKPLPPNQVGELWVRGP--------ILMPGDLGYFDEH- 412 (488)
Q Consensus 343 G~tE~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~--------~~~tGD~~~~~~~- 412 (488)
|+||+++. +...... .....+.|.+++.++|+|++++++++.|+.|||+|+|. ||+|||+|+++++
T Consensus 245 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~~~~p~~~y~TGDl~~~~~~c 320 (443)
T 2y4o_A 245 GLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPPT 320 (443)
T ss_dssp EETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSSCCSSEEEEEEECEECCS
T ss_pred CchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCCcccChhheeecCCEEEEcCCC
Confidence 99997432 3322211 11125667789999999987899999999999999973 8999999999999
Q ss_pred CcE-----EEEcccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCC--C---CCCCHHHHH
Q 043601 413 GQL-----FIVDRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSP--N---SSLTKEDVQ 479 (488)
Q Consensus 413 g~l-----~~~GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~---~~~~~~~i~ 479 (488)
|.+ ++.||.||+||++|++| +||+++.++|+|.+++|++.+++..++.++++|++++ + ...+.++++
T Consensus 321 G~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~ 400 (443)
T 2y4o_A 321 ARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALA 400 (443)
T ss_dssp SSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHH
T ss_pred CCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHH
Confidence 986 89999999999999999 9999999999999999998877666788999999876 2 223457788
Q ss_pred HHHHhhcC
Q 043601 480 KFVANDSQ 487 (488)
Q Consensus 480 ~~~~~~l~ 487 (488)
++|+++|+
T Consensus 401 ~~l~~~l~ 408 (443)
T 2y4o_A 401 RELQHRIK 408 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887663
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=4e-32 Score=262.11 Aligned_cols=233 Identities=18% Similarity=0.118 Sum_probs=178.2
Q ss_pred CCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHH-hhhhhhcCCCCcEEEEecch-hhHHhHHHHHHHHhhCCceEEE
Q 043601 188 VKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMT-AMDQELAGALDYVTLCVLPM-FHVFGLSFVVYAQLQKGNCVVS 265 (488)
Q Consensus 188 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~G~~~~~ 265 (488)
..++++++|+|||||||.||+|+++|.++....... .........+++++++.+|+ +|..++ ...+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEE
Confidence 467889999999999999999999999998774321 12334456788999999999 999888 45555688898 666
Q ss_pred cCCCCHH-----------------------HHHHHHHhcCccEEEecHHHHHHHHhcCCccCCCCCCCccEEEEccCCCc
Q 043601 266 MRKFDLE-----------------------TALRAIEKYRVTHWWVVPPIILALAKNVSLVKKFDLSSLKGIGSGAAPLR 322 (488)
Q Consensus 266 ~~~~~~~-----------------------~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~v~~~G~~l~ 322 (488)
...+++. .+++.++++++|+++++|+++..|++. ......++++||.+++|||+++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~-~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR-PEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC-HHHHHHHHHHCSEEEEESSCCC
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh-hhhhccccCCeeEEEECCccCC
Confidence 6666777 888899999999999999999999876 3333356788999999999999
Q ss_pred HHHHHHHH-hhCCCCeEEeccCcccccccccccCCCCCCCCCCceeec------CCCceEEEEeCCCCCCCCCCCcceEE
Q 043601 323 KELVEECS-KNLPTVTVFQGYGMTETCGVVTVENPLLGVQNSGSTGTL------VAGVEAQIVCVDTLKPLPPNQVGELW 395 (488)
Q Consensus 323 ~~~~~~~~-~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~i~d~~~~~~~~~g~~Gel~ 395 (488)
+++++++. +.||++++++.||+||+++++..+.. .++|+| .+++.++|+|++++++++.|+.|||+
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~ 317 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI 317 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEE
Confidence 99999999 99977999999999999866543221 147888 99999999997799999999999999
Q ss_pred EecC-------CccccceEEEccC--C-------cEEEEcccCcceeeCcE
Q 043601 396 VRGP-------ILMPGDLGYFDEH--G-------QLFIVDRIKELIKCNGF 430 (488)
Q Consensus 396 v~g~-------~~~tGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 430 (488)
|++. +|+|||++++.+. | .+..++|.++..++.|.
T Consensus 318 vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEcCcccccccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9973 6889999987543 2 34556777777777664
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.95 E-value=7e-09 Score=102.72 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=91.5
Q ss_pred CCC---ccEEEEccCCCcHHHHHHHHhhCCCCeEE-eccCcccccccccccCCCCCCCCCCceee-cCC-CceEEEEeCC
Q 043601 308 LSS---LKGIGSGAAPLRKELVEECSKNLPTVTVF-QGYGMTETCGVVTVENPLLGVQNSGSTGT-LVA-GVEAQIVCVD 381 (488)
Q Consensus 308 l~~---lr~v~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~~i~d~~ 381 (488)
+++ +..++.||- ..-++.++..+|+..+. ..|++||. .+..+... ...+...+. .+| .+.++.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg--~~gi~~~p--~~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET--TFGINLDP--LCKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC--EEEECSCT--TSCGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc--eeeeccCC--CCCcccCceeecCCcEEEEEEecc
Confidence 567 555566663 33334455555567777 89999995 22322111 111112222 222 3566777643
Q ss_pred C--------CCCCCCCCcceEEEecC----CccccceEEEcc----CCcEEEEcccCcceeeCcEEe---eHhHHHhcCC
Q 043601 382 T--------LKPLPPNQVGELWVRGP----ILMPGDLGYFDE----HGQLFIVDRIKELIKCNGFQV---ELEGVLVSHP 442 (488)
Q Consensus 382 ~--------~~~~~~g~~Gel~v~g~----~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~~~ 442 (488)
+ ...+..|+.+||+++.. .|++||+.++.. ...+.|.||.++++++.|+++ +||.++.+.-
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSSSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeeccceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHH
Confidence 2 24567899999999975 689999999875 457999999999999999999 8888887432
Q ss_pred ------C--eeeeEEEeecCCCCCceEEEEEEeC
Q 043601 443 ------E--ILDAVVIPFPDPEAGEVPIAYVVRS 468 (488)
Q Consensus 443 ------~--v~~~~v~~~~~~~~~~~~~~~v~~~ 468 (488)
+ |.|..++.... ......+.++.++
T Consensus 449 ~~l~~~g~~l~eft~~~~~~-~~p~Hy~~~wel~ 481 (581)
T 4eql_A 449 LVLESSGLDLKDFTSYADTS-TFPGHYVVYLEVD 481 (581)
T ss_dssp -------------CEEEECS-SSSBEEEEECC--
T ss_pred HhhhhcCCEEEEEEEecCCC-CCCCeEEEEEEEe
Confidence 2 56666654322 2222445555543
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.87 E-value=2.5e-08 Score=98.85 Aligned_cols=165 Identities=13% Similarity=0.066 Sum_probs=100.1
Q ss_pred CCCcc---EEEEccCCCcHHHHHHHHhhCCCCeEE-eccCcccccccccccCCCCCCCCCCceee-cCC-CceEEEEeCC
Q 043601 308 LSSLK---GIGSGAAPLRKELVEECSKNLPTVTVF-QGYGMTETCGVVTVENPLLGVQNSGSTGT-LVA-GVEAQIVCVD 381 (488)
Q Consensus 308 l~~lr---~v~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~~i~d~~ 381 (488)
+++++ .++.||- ..-++.++..+++..++ ..|++||.- ++....+. ..+...+. .+| .+.++.++.+
T Consensus 301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~---~~p~~~~~~L~p~~~ffEFIP~~ 373 (609)
T 4b2g_A 301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPM---SKPSEVSYTIMPNMAYFEFLPHE 373 (609)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTT---SCGGGCCEEECTTSCEEEEEEGG
T ss_pred CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCCC---CCcccCceeecCCcEEEEEEecc
Confidence 57754 5555663 23334454555557777 899999952 33222111 11112222 222 3566677543
Q ss_pred CC---------------CCCCCCCcceEEEecC----CccccceEEEcc----CCcEEEEcccCcceeeCcEEe---eHh
Q 043601 382 TL---------------KPLPPNQVGELWVRGP----ILMPGDLGYFDE----HGQLFIVDRIKELIKCNGFQV---ELE 435 (488)
Q Consensus 382 ~~---------------~~~~~g~~Gel~v~g~----~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v---~ie 435 (488)
+. .+++.|+.+||+++.. .|++||++++.. ...+.|.||.++++++.|+++ +||
T Consensus 374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~ 453 (609)
T 4b2g_A 374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQ 453 (609)
T ss_dssp GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHH
T ss_pred ccccccccCCCCccccHhHcCCCCeEEEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHH
Confidence 32 4577899999999975 688999999863 468999999999999999999 888
Q ss_pred HHHhc------CCC--eeeeEEEeecCCCCCceEEEEEEeCC---CCCCCHHHHHH
Q 043601 436 GVLVS------HPE--ILDAVVIPFPDPEAGEVPIAYVVRSP---NSSLTKEDVQK 480 (488)
Q Consensus 436 ~~l~~------~~~--v~~~~v~~~~~~~~~~~~~~~v~~~~---~~~~~~~~i~~ 480 (488)
.++.+ ..+ |.|..++.... ......+.++.++. ...++.+.+.+
T Consensus 454 ~av~~a~~~l~~~g~~l~eft~~~d~~-~~p~Hyv~~wEl~~~~~~~~~~~~~l~~ 508 (609)
T 4b2g_A 454 KAVDNASKLLREVNTSVVEYTSFADTK-TIPGHYVIYWELLVKDSANSPSDELLGQ 508 (609)
T ss_dssp HHHHHHHHGGGGTTEEEEEEEEEEECS-SSSCEEEEEEEEEESCGGGCCCHHHHHH
T ss_pred HHHHHHHHhhhccCCeEEEEEEecCCC-CCCCcEEEEEEEecccccCCCCHHHHHH
Confidence 87762 233 66777754332 22235555565541 12344455543
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.75 E-value=1.2e-07 Score=93.72 Aligned_cols=163 Identities=14% Similarity=0.075 Sum_probs=98.6
Q ss_pred CCCcc---EEEEccCCCcHHHHHHHHhhCCCCeEE-eccCcccccccccccCCCCCCCCCCcee-ecCC-CceEEEEeCC
Q 043601 308 LSSLK---GIGSGAAPLRKELVEECSKNLPTVTVF-QGYGMTETCGVVTVENPLLGVQNSGSTG-TLVA-GVEAQIVCVD 381 (488)
Q Consensus 308 l~~lr---~v~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~g-~~~~-~~~~~i~d~~ 381 (488)
+++++ .++.|+- ..-++.++..+++..+. ..|++||. .+..+... ...++..+ ..+| .+.++.++.+
T Consensus 301 WPnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg--~~gi~~~p--~~~~~~~~~~L~p~~~ffEFiP~~ 373 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEG--WIAANVTP--RLSPEEATFAVIPNLGYFEFLPVS 373 (581)
T ss_dssp CTTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTE--EEEECCCT--TSCTTTCCEEECTTSCEEEEEEC-
T ss_pred CCCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceeccce--eeeeecCC--CCCccccceeecCCcEEEEEEecc
Confidence 67775 3334432 22234455555557777 89999995 23322211 12222222 2223 3455666533
Q ss_pred C----------CCCCCCCCcceEEEecC----CccccceEEEcc----CCcEEEEcccCcceeeCcEEe---eHhHHHhc
Q 043601 382 T----------LKPLPPNQVGELWVRGP----ILMPGDLGYFDE----HGQLFIVDRIKELIKCNGFQV---ELEGVLVS 440 (488)
Q Consensus 382 ~----------~~~~~~g~~Gel~v~g~----~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v---~ie~~l~~ 440 (488)
+ ...+..|+.+||+++.. .|++||+.++.. ...+.|.||.++++++.|+++ +||.++.+
T Consensus 374 ~~~~~~~~~v~l~eve~G~~YelviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~ 453 (581)
T 4epl_A 374 ETGEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES 453 (581)
T ss_dssp ------CCCEEGGGCCTTCEEEEEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred cccCCCCceeeHHHcCCCCeEEEEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence 2 24678899999999975 688999998853 247899999999999999999 78877763
Q ss_pred ------CC--CeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHH
Q 043601 441 ------HP--EILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQK 480 (488)
Q Consensus 441 ------~~--~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~ 480 (488)
.. .|.|..++.... ......+.++..+. .++.+.+.+
T Consensus 454 a~~~l~~~~~~l~eft~~~d~~-~~p~hyv~~wE~~~--~~~~~~l~~ 498 (581)
T 4epl_A 454 AAKRLSEEKIEVIDFSSYIDVS-TDPGHYAIFWEISG--ETNEDVLQD 498 (581)
T ss_dssp HHHHHHTTTCCEEEEEEEEECS-SSSCEEEEEEEESS--CCCHHHHHH
T ss_pred HHHhhcccCCeEEEEEEecCCC-CCCCcEEEEEeecC--CCCHHHHHH
Confidence 22 477877766432 22235566666643 244444443
No 40
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.72 E-value=1.9e-08 Score=77.37 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=53.3
Q ss_pred cccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCC----CHHHHHHHHHhh
Q 043601 419 DRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSL----TKEDVQKFVAND 485 (488)
Q Consensus 419 GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~i~~~~~~~ 485 (488)
||.||+|+++|.++ +||+++.+||+|.++++++.+++.+++.++++|++ ++... +.+++.+.++++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~ 73 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQ 73 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHH
Confidence 89999999999999 99999999999998888888777778899999998 65422 334455555443
No 41
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.69 E-value=3.9e-08 Score=75.78 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=52.0
Q ss_pred cccCcceeeCcEEe---eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCH
Q 043601 419 DRIKELIKCNGFQV---ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTK 475 (488)
Q Consensus 419 GR~~d~i~~~G~~v---~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 475 (488)
.|.||+|+++|.+| +||+++.+||+|.++++++.+++.+++.+.++|+..++...+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~ 60 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY 60 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc
Confidence 48999999999999 9999999999999999999999999999999999988765554
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.68 E-value=1.1 Score=43.19 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=70.6
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--chHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEE
Q 043601 53 ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSI--QFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLV 130 (488)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (488)
..+|.+.+...+..++..+...|++++|++....|-.. ..+...++++..|+..++.++ .+.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 46899999888888888888889999999998887642 234456788899999887765 478889999999999999
Q ss_pred EEccccHHHHh
Q 043601 131 VTVPELWERVK 141 (488)
Q Consensus 131 i~~~~~~~~~~ 141 (488)
+..+.....+.
T Consensus 187 ~~~Ps~~~~l~ 197 (437)
T 2y27_A 187 MVTPSYMLSIA 197 (437)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 98877665543
No 43
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.17 E-value=1 Score=43.34 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=71.0
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--chHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEE
Q 043601 53 ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSI--QFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLV 130 (488)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (488)
..+|.+.+...+..++..+...|+.++|++....+-+. ..+..+++++..|+..++.++ .+.+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 46899999998888888888889999999999887542 334466888999999888764 477888999999999999
Q ss_pred EEccccHHHHh
Q 043601 131 VTVPELWERVK 141 (488)
Q Consensus 131 i~~~~~~~~~~ 141 (488)
+..+.....+.
T Consensus 183 ~~~P~~~~~l~ 193 (436)
T 3qov_A 183 HAIPSYAIRLA 193 (436)
T ss_dssp ECCHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 98877665543
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.36 E-value=1.5 Score=42.17 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=70.3
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--chHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEE
Q 043601 53 ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSI--QFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLV 130 (488)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (488)
-.+|.+.+...+..++..+...|++++|++....+-+. ..+...++++..|+..+++++ .+.+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence 46899999888888888888889999999998887643 234456888899999888765 478888999999999999
Q ss_pred EEccccHHHH
Q 043601 131 VTVPELWERV 140 (488)
Q Consensus 131 i~~~~~~~~~ 140 (488)
+..+.....+
T Consensus 189 ~~~Ps~~~~l 198 (443)
T 2y4o_A 189 LVTPSYMLNL 198 (443)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 9887766554
No 45
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=79.80 E-value=5 Score=37.33 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=64.1
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc--hHHHHHHHHHcCCeEeecCCCCCHH--------------
Q 043601 53 ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQ--FPICLLGVIAIGGIATTANPVYTVS-------------- 116 (488)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 116 (488)
..+|.+.+...+..++..+...|+.++|++....|-+.. -+...++++..|+.+++. .+++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 457899998888877777778899999999998886332 233445558889855544 34444
Q ss_pred ---------HHHHHHhhcCCeEEEEccccHHHHh
Q 043601 117 ---------ELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 117 ---------~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
.+...+++.++.+++..+.....+.
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6667889999999998887766654
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=78.45 E-value=22 Score=34.51 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=72.5
Q ss_pred cCCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcch-HHHHHHHHHcCCeEeecC
Q 043601 39 SYGSKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQF-PICLLGVIAIGGIATTAN 110 (488)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~ 110 (488)
..|+.+|++-..+| -.+|.+.+...+..+.. ..++.+++++...+|-...+ +..+++++..|+..+..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 35677776532222 46899988876665544 35889999999888875433 334677888899888775
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 111 PVYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
..+.+.+...+++.++.+++..+.....+.
T Consensus 237 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp -SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 578899999999999999998877766553
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=77.94 E-value=10 Score=37.47 Aligned_cols=98 Identities=21% Similarity=0.202 Sum_probs=71.1
Q ss_pred CceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH--HHHHHHHcCCeEeecCCC
Q 043601 42 SKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI--CLLGVIAIGGIATTANPV 112 (488)
Q Consensus 42 ~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l~~~ 112 (488)
+.+|++-..+| -.+|.+.+...+......+...+++++|++....|-...+-. .+++.+ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 67776533222 468999987766655444333578899999888887654432 356667 999888775 5
Q ss_pred CCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 113 YTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 113 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
++.+.+...+++.++.+++..+.....+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 78899999999999999998887766554
No 48
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=77.66 E-value=24 Score=34.66 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=71.6
Q ss_pred cCCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH---HHHHHHHcCCeEee
Q 043601 39 SYGSKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI---CLLGVIAIGGIATT 108 (488)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~ 108 (488)
..|+.+|++-..+| -.+|.+.+...+..... ..+++++|++....|-+..+-. .+++.+..|+..+.
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 255 (539)
T 1mdb_A 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255 (539)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEE
Confidence 34667776532222 46899988776655443 3478899999888887654433 47888999999887
Q ss_pred cCCCCCHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 109 ANPVYTVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 109 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
.+ ..+.+.+...+++.++.+++..+.....+
T Consensus 256 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 286 (539)
T 1mdb_A 256 SP-SPSPDDAFPLIEREKVTITALVPPLAMVW 286 (539)
T ss_dssp CS-SSSHHHHHHHHHHHTCSEEEECHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHcCCeEEEccHHHHHHH
Confidence 64 57888899999999999999887766554
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=77.09 E-value=22 Score=35.02 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH---HHHHHHHcCCeEeec
Q 043601 40 YGSKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI---CLLGVIAIGGIATTA 109 (488)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l 109 (488)
.|+.+|++-..+| -.+|.+.+...+...+.. .++.++|++....|-...+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4567776532222 468999988776665543 488999999998887665544 368888899988876
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 110 NPVYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
+ ..+...+...+++.++.+++..+.....+.
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMWL 296 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence 5 567888889999999999998877665543
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=73.57 E-value=26 Score=34.21 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=69.0
Q ss_pred CCCceEEEeC---CCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHH--HHHHHHcCCeEeecC
Q 043601 40 YGSKSALIDA---DSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPIC--LLGVIAIGGIATTAN 110 (488)
Q Consensus 40 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~--~lA~~~~G~~~v~l~ 110 (488)
.|+.+|++-. ..| -.+|.+.+...+..++.. .++.++|++...+|-...+-.. +++++ .|+..+..
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~- 242 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM- 242 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence 3566666422 122 568999988776665544 4889999999988876554433 44555 88888876
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 111 PVYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
+.++...+...++..++.++...+.....+.
T Consensus 243 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 273 (517)
T 3r44_A 243 PQFDATKVWSLIVEERVCIGGAVPAILNFMR 273 (517)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence 4678899999999999999998887766554
No 51
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=69.52 E-value=8.4 Score=26.74 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=33.2
Q ss_pred eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhcC
Q 043601 433 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQ 487 (488)
Q Consensus 433 ~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l~ 487 (488)
++.+.+.++|+|.+|..+.-+. .+.+.|..+ +.+++.+++.+++.
T Consensus 17 ~~~~~l~~~peV~e~~~vtG~~-----D~ll~v~~~-----d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 17 EVMEKLLAMPEVKEAYVVYGEY-----DLIVKVETD-----TLKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHTSTTEEEEEECBSSC-----SEEEEEEES-----SHHHHHHHHHTTGG
T ss_pred HHHHHHhCCCCeeEEEEEcccC-----CEEEEEEEC-----CHHHHHHHHHHHhc
Confidence 7888999999999998874322 455666554 68888888876653
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=69.24 E-value=21 Score=35.19 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=66.2
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcch-HHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEE
Q 043601 53 ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQF-PICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVV 131 (488)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 131 (488)
-.+|.+.+...+......+...++.+++++....|-...+ +...++.+..|+..+..+ ..+.+.+...+++.++.+++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEE
Confidence 5689988877655544444445788999998888876433 345667788899888774 57888999999999999999
Q ss_pred EccccHHHHh
Q 043601 132 TVPELWERVK 141 (488)
Q Consensus 132 ~~~~~~~~~~ 141 (488)
..+.....+.
T Consensus 287 ~~P~~~~~l~ 296 (550)
T 3rix_A 287 LVPTLFSFFA 296 (550)
T ss_dssp ECHHHHHHHH
T ss_pred eCcHHHHHHH
Confidence 8887766554
No 53
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=68.96 E-value=21 Score=34.73 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=71.0
Q ss_pred CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcch-HHHHHHHHHcCCeEeecCC
Q 043601 40 YGSKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQF-PICLLGVIAIGGIATTANP 111 (488)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 111 (488)
.|+.+|++-..+| -.+|++.+...+..... ..++.++|++....|-+..+ +..+++.+..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 4566666422112 46899988776655443 45889999999988876543 4457888999999888865
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 112 V--YTVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 112 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
. .++..+...+++.++.+++..+.....+
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4678888999999999999887766554
No 54
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=65.99 E-value=27 Score=34.02 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=70.4
Q ss_pred CCCceEEEe---CCCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchH-HHHHHHHHcCCeEeecCC
Q 043601 40 YGSKSALID---ADSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFP-ICLLGVIAIGGIATTANP 111 (488)
Q Consensus 40 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~-~~~lA~~~~G~~~v~l~~ 111 (488)
.++.+|++- +..| -.+|.+.+...+..+.. ..++.+++++....|-+..+- ..+++++..|+..+..+.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 356666542 2222 46899988776655443 357889999999888765443 457888899999887765
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 112 V--YTVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 112 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
. .++..+...+++.++.+++..+.....+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4677888999999999999887766554
No 55
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=65.59 E-value=28 Score=32.11 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=62.7
Q ss_pred cCCCceEEE---eCCCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcch-HHHHHHHHHcCCeEeecC
Q 043601 39 SYGSKSALI---DADSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQF-PICLLGVIAIGGIATTAN 110 (488)
Q Consensus 39 ~~p~~~a~~---~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~ 110 (488)
.++|.+|++ ++..| -.+|++.+...+..++. ..+++++|++...+|-...+ +..++..+..|+..+..+
T Consensus 34 w~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 34 WLGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HHHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred cCCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 345556654 33333 46999998876655544 34889999999888766433 344556677788777776
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 111 PVYTVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
+.... ...++..++.++...+.....+
T Consensus 111 ~~~~~---~~~i~~~~~t~~~~~P~~l~~l 137 (358)
T 4gs5_A 111 PTANP---LAGLDHADFDFVAMVPMQLQSI 137 (358)
T ss_dssp CCSCT---TTTCSSCCCSEEEECHHHHHHH
T ss_pred ccccH---HHHHHHhCCeEEEcChHHHHHh
Confidence 65432 3456778888888776655544
No 56
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=65.13 E-value=30 Score=33.55 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=70.4
Q ss_pred cCCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEcCCCcchH--HHHHHHHHcCCeEe
Q 043601 39 SYGSKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGV--TKHDVVLIFAPNSIQFP--ICLLGVIAIGGIAT 107 (488)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~--~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~v 107 (488)
..|+.+|++-..+| -.+|.+.+...+..+.. ..++ .+++++...+|-...+- ..+++.+..|+..+
T Consensus 150 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 226 (504)
T 1t5h_X 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYV 226 (504)
T ss_dssp CCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEE
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEE
Confidence 34677776532222 46899888766555443 3467 78898888888765443 34688889999988
Q ss_pred ecCCCCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 108 TANPVYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 108 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
..+ ..++..+...+++.++.+++..+.....+.
T Consensus 227 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 259 (504)
T 1t5h_X 227 VVE-EFRPVDALQLVQQEQVTSLFATPTHLDALA 259 (504)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHH
T ss_pred eCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHH
Confidence 775 477888899999999999998877665553
No 57
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=64.08 E-value=48 Score=32.81 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=68.3
Q ss_pred CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH--HHHHHHHcCCeEeecC
Q 043601 40 YGSKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI--CLLGVIAIGGIATTAN 110 (488)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l~ 110 (488)
.|+.+|++-..+| -.+|++ +........ ....+++++|++....|-+..+-. .+++.+..|+..+..+
T Consensus 204 ~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 280 (570)
T 3c5e_A 204 GSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL 280 (570)
T ss_dssp BTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred CCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence 4667776532222 468888 433111111 144688999999888887755433 4677888898887765
Q ss_pred C-CCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 111 P-VYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 111 ~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
. .+++..+...++..++.+++..+.....+.
T Consensus 281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 3 678899999999999999998877766554
No 58
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=63.80 E-value=78 Score=31.61 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=70.0
Q ss_pred CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH---HHHHHHHcCCeEeec
Q 043601 40 YGSKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI---CLLGVIAIGGIATTA 109 (488)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~l 109 (488)
.|+.+|.+-..+| -.+|.+.+...+...... .++.+++++....|-...+-. .+++.+..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 3567776422212 568999887766655444 478899999998886655443 368888889988876
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 110 NPVYTVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
+ ..+...+...++..++.++...+.....+
T Consensus 259 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 259 A-DPSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 5 46778888899999999999887665544
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=63.19 E-value=30 Score=34.32 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=70.5
Q ss_pred cCCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH--HHHHHHHcCCeEeec
Q 043601 39 SYGSKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI--CLLGVIAIGGIATTA 109 (488)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l 109 (488)
..|+.+|++-..+| -.+|.+.+...+..+.. ..++.++|++...+|-...+-. .+++.+..|+..+..
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 34667776532222 46999999877666544 4588999999999888765543 368888999998887
Q ss_pred CCCC---CHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 110 NPVY---TVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 110 ~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
++.. ++..+...+++.++.++.........+
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 274 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYC 274 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHH
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHH
Confidence 6532 567788889999999888765554433
No 60
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=61.68 E-value=14 Score=25.38 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=31.8
Q ss_pred eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhc
Q 043601 433 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDS 486 (488)
Q Consensus 433 ~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l 486 (488)
++.+.+.++|+|.+|..+.-+ ..+.+.|..+ +.+++.+++.++|
T Consensus 17 ~~~~~l~~~peV~~~~~vtG~-----~d~l~~v~~~-----d~~~l~~~~~~~l 60 (83)
T 2zbc_A 17 EVFERLKSMSEVTEVHVVYGV-----YDIVVKVEAD-----SMDKLKDFVTNTI 60 (83)
T ss_dssp HHHHHHTTCTTEEEEEECSSS-----CSEEEEEECS-----SHHHHHHHHHHTG
T ss_pred HHHHHHhCCCCeEEEEEEecc-----CCEEEEEEEC-----CHHHHHHHHHHHh
Confidence 778889999999999887432 2455555543 6788888876655
No 61
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=60.27 E-value=38 Score=33.21 Aligned_cols=88 Identities=14% Similarity=0.150 Sum_probs=63.2
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH-HHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEE
Q 043601 53 ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI-CLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVV 131 (488)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 131 (488)
-.+|.+.+...+.... .....++.++|++...+|-...+-. ..++++..|+..+..++.+++..+...+++.++.+++
T Consensus 194 V~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 194 VVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 4689988764433210 1123478899999888886543332 4577788899988887677899999999999999999
Q ss_pred EccccHHHHh
Q 043601 132 TVPELWERVK 141 (488)
Q Consensus 132 ~~~~~~~~~~ 141 (488)
..+.....+.
T Consensus 273 ~~P~~~~~l~ 282 (541)
T 1v25_A 273 GVPTVWLALA 282 (541)
T ss_dssp ECHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 8877665543
No 62
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=59.72 E-value=41 Score=33.04 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=70.7
Q ss_pred CceEEE---eCCCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcch-HHHHHHHHHcCCeEeecCCCC
Q 043601 42 SKSALI---DADSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQF-PICLLGVIAIGGIATTANPVY 113 (488)
Q Consensus 42 ~~~a~~---~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~ 113 (488)
+.+|++ .+..| -.+|.+.+...+..++.. .++.++|++...+|-...+ +..++.++..|+..+..+ .+
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~ 255 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MF 255 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SC
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CC
Confidence 667764 22222 569999998877766554 4788999998888765543 233667788899888775 67
Q ss_pred CHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 114 TVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 114 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
+.+.+...++..++.+++..+.....+.
T Consensus 256 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 283 (549)
T 3g7s_A 256 NQEMLAENIEKYKGTFSWAVPPALNVLV 283 (549)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHhCCeEEEeCCHHHHHHH
Confidence 8889999999999999998877666553
No 63
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=58.66 E-value=36 Score=31.07 Aligned_cols=93 Identities=8% Similarity=-0.119 Sum_probs=59.6
Q ss_pred CCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHH
Q 043601 41 GSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLG-VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELS 119 (488)
Q Consensus 41 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 119 (488)
+.++.+-..+.+.+-+++.-- ....+ ....+.| +++|+.|.+.+..+-.-....++|...|..++.+-|...+....
T Consensus 34 g~~i~~K~E~~~ptGSfK~R~-a~~~i-~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 111 (334)
T 3tbh_A 34 KAKVVLKMECENPMASVKDRL-GFAIY-DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERR 111 (334)
T ss_dssp SSEEEEEEGGGSTTSBTHHHH-HHHHH-HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CCEEEEEeCCCCCccCcHHHH-HHHHH-HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 345666554333445666531 12223 3334455 48888865555667777888888888898666555555555566
Q ss_pred HHHhhcCCeEEEEccc
Q 043601 120 KQVKDSSPKLVVTVPE 135 (488)
Q Consensus 120 ~~l~~~~~~~vi~~~~ 135 (488)
..++..++++++++..
T Consensus 112 ~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 112 CLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHCCCEEEEECCC
Confidence 7889999999999754
No 64
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=58.60 E-value=58 Score=31.81 Aligned_cols=100 Identities=8% Similarity=0.014 Sum_probs=69.6
Q ss_pred CCCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHh-hhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEEc
Q 043601 188 VKQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTA-MDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSM 266 (488)
Q Consensus 188 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 266 (488)
..++.++++....| -.+|...+...+.... .-...+..+++++...++-..- +...+++++..|+..+.+
T Consensus 34 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 34 NHSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE--FVLAFLGASHRGAIITAA 104 (536)
T ss_dssp GSTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred cCCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEecc
Confidence 35677887653322 3578888876632211 1222456788988888776543 336778889999999988
Q ss_pred CC-CCHHHHHHHHHhcCccEEEecHHHHHHH
Q 043601 267 RK-FDLETALRAIEKYRVTHWWVVPPIILAL 296 (488)
Q Consensus 267 ~~-~~~~~~~~~l~~~~~t~l~~~p~~~~~l 296 (488)
++ ...+++...+++.++..++..+.....+
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 65 6789999999999999999887654443
No 65
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=57.18 E-value=52 Score=31.48 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=71.2
Q ss_pred CCCCEEEEEccc--CCCCCCchhhhccHHHHHHhhHHhhhhhhc--CCCCcEEEEecchhhHHhHHHHHHHHhhCCceEE
Q 043601 189 KQTDTAALLYSS--GTTGVGKGAILTHKNFIASSLMTAMDQELA--GALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVV 264 (488)
Q Consensus 189 ~~~~~a~i~~TS--GtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 264 (488)
.++.+|++.... +.+| ....+|.+.+...+.. ....+. ..+++++...++-..- +...+++++..|+..+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~--lA~~L~~~g~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~v 110 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLN--VAQELSRCGSTGDRVVISAPQGLE--YVVAFLGALQAGRIAV 110 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHH--HHHHHTTSSCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHH--HHHHHHhcCCCCCEEEEEcCCcHH--HHHHHHHHHHhCcEEE
Confidence 466778776542 2222 2356888888876332 222222 2378888877765543 3367789999999999
Q ss_pred EcCC----CCHHHHHHHHHhcCccEEEecHHHHHHHHhc
Q 043601 265 SMRK----FDLETALRAIEKYRVTHWWVVPPIILALAKN 299 (488)
Q Consensus 265 ~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~ 299 (488)
.++. ...+++...+++.++..++..+.....+...
T Consensus 111 pl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 111 PLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp EECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred eeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 8854 4568889999999999999998877666543
No 66
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=56.36 E-value=86 Score=30.27 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=65.7
Q ss_pred cCCCceEEE---eCCCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH-HHHHHHHcCCeEeecC
Q 043601 39 SYGSKSALI---DADSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI-CLLGVIAIGGIATTAN 110 (488)
Q Consensus 39 ~~p~~~a~~---~~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~-~~lA~~~~G~~~v~l~ 110 (488)
..|+.+|++ .+..| -.+|.+.+...+..+.. ..++.++|++...+|-...+-. ..+.+...|...+.+.
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~ 233 (509)
T 3ivr_A 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA 233 (509)
T ss_dssp CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec
Confidence 345666654 22223 46899988776665544 3588999999998887654332 2333344444444443
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 111 PVYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
..+...+...++..++.+++........+.
T Consensus 234 -~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 263 (509)
T 3ivr_A 234 -KFDPAQAARDIEAHKVTVMAEFAPMLGNIL 263 (509)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEEETTHHHHHH
T ss_pred -ccCHHHHHHHHHHHCCcEEEecHHHHHHHH
Confidence 678899999999999999998777666554
No 67
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=55.11 E-value=43 Score=30.68 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=63.8
Q ss_pred CCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHH
Q 043601 41 GSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSK 120 (488)
Q Consensus 41 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 120 (488)
.-++.+-....+.+=||+.= -..+.+.....+.-+++|.+..+....+-.-....++|.++|..++.+-|...+.....
T Consensus 49 G~~IylK~E~lnptGSfK~R-gA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~ 127 (344)
T 3vc3_A 49 GAYVAVKQEMMQPTASIADR-PAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV 127 (344)
T ss_dssp CSEEEEEEGGGSTTSBTTHH-HHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CCEEEEEecCCCCCCCcHHH-HHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHH
Confidence 44566655433445566632 22334444444333677876666777788888899999999997776666666666778
Q ss_pred HHhhcCCeEEEEccc
Q 043601 121 QVKDSSPKLVVTVPE 135 (488)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (488)
.++..++++++++..
T Consensus 128 ~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 128 TMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 899999999998754
No 68
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=54.27 E-value=96 Score=29.96 Aligned_cols=97 Identities=14% Similarity=0.285 Sum_probs=68.1
Q ss_pred CCCceEEEe---CCCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcch--HHHHHHHHHcCCeEeecC
Q 043601 40 YGSKSALID---ADSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQF--PICLLGVIAIGGIATTAN 110 (488)
Q Consensus 40 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~ 110 (488)
.|+.+|++- +..| -.+|.+.+...+..+...+ ++.++|++...+|-...+ +..+++.+..|+..+..+
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 456667642 2222 5689999988777666554 788999988877765433 234788889999988774
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 111 PVYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
.++.+.+...+ ..++.+++..+.....+.
T Consensus 230 -~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~ 258 (505)
T 3nyq_A 230 -RFSTEGAAREL-NDGATMLFGVPTMYHRIA 258 (505)
T ss_dssp -SCCHHHHHHHH-TTTCCEEEECHHHHHHHH
T ss_pred -CCChHHHHHHH-hhCCeEEEehHHHHHHHH
Confidence 56777777777 678999988877666553
No 69
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=53.86 E-value=12 Score=26.51 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=31.9
Q ss_pred Ee-eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhc
Q 043601 431 QV-ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDS 486 (488)
Q Consensus 431 ~v-~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l 486 (488)
.. ++.+.+.++|+|.+|..+.-+ ..+.+.|..+ +.+++.+++.+++
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vtG~-----~D~ll~v~~~-----d~~~l~~~l~~~l 60 (92)
T 2djw_A 14 RVQALGEAIAELPQVAEVYSVTGP-----YDLVALVRLK-----DVEELDDVVTQGI 60 (92)
T ss_dssp GHHHHHHHHTTSTTEEEEEEESSS-----SSEEEEEEES-----SGGGHHHHCCCCC
T ss_pred CHHHHHHHHhcCCCeEEEEEeecC-----CCEEEEEEEC-----CHHHHHHHHHHhc
Confidence 34 788889999999999887432 2455666554 5677777765544
No 70
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=51.95 E-value=44 Score=33.02 Aligned_cols=98 Identities=12% Similarity=0.117 Sum_probs=66.7
Q ss_pred CCCceEEEeC---CCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchH-HHHHHHHHcCCeEeecCC
Q 043601 40 YGSKSALIDA---DSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFP-ICLLGVIAIGGIATTANP 111 (488)
Q Consensus 40 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~-~~~lA~~~~G~~~v~l~~ 111 (488)
.|+.+|++-. ..| -.+|.+.+...+..+. ...++.++|++..+.|-....- ..++..+..|+..+..+.
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 180 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK 256 (563)
T ss_dssp CTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcCh
Confidence 4566676422 222 4689998865544332 3358899999998887665433 346777888998887764
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 112 V--YTVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 112 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
. .+...+...+++.++.++...+.....+
T Consensus 257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 287 (563)
T 1amu_A 257 DTINDFVKFEQYINQKEITVITLPPTYVVHL 287 (563)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHHHHTTS
T ss_pred HhhcCHHHHHHHHHHcCCcEEEeCHHHHHHH
Confidence 3 4677888999999999998876655433
No 71
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=51.78 E-value=40 Score=32.94 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCCceEEEeCCCC-------cceeHHHH-HHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH--HHHHHHHcCCeEeec
Q 043601 40 YGSKSALIDADSG-------ESLTFSQF-KSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI--CLLGVIAIGGIATTA 109 (488)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el-~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l 109 (488)
.|+.+|++-..+| -.+|.+.+ ...... .....++.++|++....|-...+-. .++..+..|+..+.+
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 181 GCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELY---AKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp CTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHT---CCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred CCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHH---hhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 4567776532212 46888887 322211 1122478899999888887765433 356788899998888
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 110 NPVYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 110 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
++..+.+.+...+++.++.+++..+.....+.
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 289 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANML 289 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 77788899999999999999998877665543
No 72
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=49.90 E-value=1.1e+02 Score=25.72 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=51.4
Q ss_pred hhHHhHHHHHHHHhhCCceEEEcC-CCCHHHHHHHHHhcCccEEEe--c----HHH--HHHHHhcCCccCCCCC-CCccE
Q 043601 244 FHVFGLSFVVYAQLQKGNCVVSMR-KFDLETALRAIEKYRVTHWWV--V----PPI--ILALAKNVSLVKKFDL-SSLKG 313 (488)
Q Consensus 244 ~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~l~~--~----p~~--~~~l~~~~~~~~~~~l-~~lr~ 313 (488)
.|..|....-..--..|-.++... ...++.+++.+++.+++.+.. + ++. +..+++.+. ...+ ..++
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~---~~~~~~~v~- 179 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN---EEKLRDSVK- 179 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH---HTTCGGGSE-
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH---HcCCCCCCE-
Confidence 466666454455566788887774 467899999999999998777 2 221 233332211 1112 1233
Q ss_pred EEEccCCCcHHHHHHH
Q 043601 314 IGSGAAPLRKELVEEC 329 (488)
Q Consensus 314 v~~~G~~l~~~~~~~~ 329 (488)
++.||.+++++..+.+
T Consensus 180 v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 180 CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp EEEESSSCCHHHHHHH
T ss_pred EEEECCCCCHHHHHHh
Confidence 7889999998765554
No 73
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=48.59 E-value=66 Score=31.74 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=70.1
Q ss_pred cCCCceEEEeCC-------CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcc-hHHHHHHHHHcCCeEeecC
Q 043601 39 SYGSKSALIDAD-------SGESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQ-FPICLLGVIAIGGIATTAN 110 (488)
Q Consensus 39 ~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~ 110 (488)
..|+.+|++-.. ++-.+|.+.+...... ....++.+++++..+.|-+.. +...+++.+..|+..+..+
T Consensus 211 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~ 286 (570)
T 4gr5_A 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQS 286 (570)
T ss_dssp CCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECS
T ss_pred CCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 356777765322 2256888887533221 233478899999998887643 4556778888999887765
Q ss_pred C-CCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 111 P-VYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 111 ~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
. ..+...+...+++.++.++...+.....+.
T Consensus 287 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 318 (570)
T 4gr5_A 287 GQNPDPLEIGELVARHGVTMLQLSASLFNFLV 318 (570)
T ss_dssp SSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHH
T ss_pred CccCCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 4 567888999999999999998877666554
No 74
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=47.78 E-value=1.3e+02 Score=30.32 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=68.5
Q ss_pred CCCCEEEEEcccCCCCCCchhhhccHHHHHHhhHHhhh-h-hhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEEc
Q 043601 189 KQTDTAALLYSSGTTGVGKGAILTHKNFIASSLMTAMD-Q-ELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSM 266 (488)
Q Consensus 189 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 266 (488)
.++.+|++... ..+|. ...+|.+.|...+...... . ..+..++|++...+|...-. ...+++++..|+..+.+
T Consensus 95 ~pd~~Al~~~~-~~~~~--~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPGQ--GYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEEC-SSTTC--CEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEc-CCCCc--eEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEee
Confidence 45677777542 21222 2358888887763332221 1 34567899999998876433 36678899999999988
Q ss_pred C-CCCHHHHHHHHHhcCccEEEecHH
Q 043601 267 R-KFDLETALRAIEKYRVTHWWVVPP 291 (488)
Q Consensus 267 ~-~~~~~~~~~~l~~~~~t~l~~~p~ 291 (488)
. .+.++.+...+++.++..+++.+.
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 5 478899999999999999998653
No 75
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=43.93 E-value=1.6e+02 Score=28.49 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=68.4
Q ss_pred CCCceEEEeCCCC-------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcch-HHHHHHHHHcCCeEeecCC
Q 043601 40 YGSKSALIDADSG-------ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQF-PICLLGVIAIGGIATTANP 111 (488)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l~~ 111 (488)
.|+.+|++-..+| -.+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+..+.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 4566776532222 5689998876554433221 24677888888877766544 4456778888998887765
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 112 V--YTVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 112 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
. .+...+...+...++.++...+.....+
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 252 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMA 252 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 4 3678888999999999998877665544
No 76
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=43.37 E-value=89 Score=31.25 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCCceEEEe---CCCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchH-HHHHHHHHcCCeEeecC-
Q 043601 40 YGSKSALID---ADSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFP-ICLLGVIAIGGIATTAN- 110 (488)
Q Consensus 40 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~-~~~lA~~~~G~~~v~l~- 110 (488)
.|+.+|.+- +..| -.+|.+.+...+. .....++.+++++....|-+.+.- ..++..+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 366777642 2222 4688888754332 223458899999999988776543 34678888898877763
Q ss_pred CCCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 111 PVYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 111 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
...++..+...+++.++.+++..+.....+.
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~ 268 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLV 268 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHH
Confidence 3568889999999999999998877666553
No 77
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=43.21 E-value=1e+02 Score=30.96 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=62.4
Q ss_pred cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchH--HHHHHHHHcCCeEeecCCC---CCHHHHHHHHhhcCC
Q 043601 53 ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFP--ICLLGVIAIGGIATTANPV---YTVSELSKQVKDSSP 127 (488)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~~~ 127 (488)
..+|.+.+...+.... -...+++++|++....|-+...- ..+++.+..|+..+..+.. .++..+..++++.++
T Consensus 274 V~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~v 351 (652)
T 1pg4_A 274 VLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 351 (652)
T ss_dssp EEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTC
T ss_pred EEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCC
Confidence 4588887754432211 12357889999988877765443 3457889999998887642 467788999999999
Q ss_pred eEEEEccccHHHHh
Q 043601 128 KLVVTVPELWERVK 141 (488)
Q Consensus 128 ~~vi~~~~~~~~~~ 141 (488)
.++++.+.....+.
T Consensus 352 t~~~~~P~~~~~l~ 365 (652)
T 1pg4_A 352 NILYTAPTAIRALM 365 (652)
T ss_dssp SEEEECHHHHHHHH
T ss_pred eEEEeCHHHHHHHH
Confidence 99999887766554
No 78
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=38.17 E-value=92 Score=30.55 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=68.8
Q ss_pred CCCceEEEeCCC-------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcch--HHHHHHHHHcCCeEeecC
Q 043601 40 YGSKSALIDADS-------GESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQF--PICLLGVIAIGGIATTAN 110 (488)
Q Consensus 40 ~p~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~ 110 (488)
.|+.+|++-..+ +-.+|.+.+...+..+... ..++.++|++...+|-...+ +..+++.+..|+..+.+.
T Consensus 174 ~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 174 VPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp CTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 367778764322 2568999887655544321 25789999999888877653 334677788888887765
Q ss_pred C---CCCHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 111 P---VYTVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 111 ~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
+ ..++..+...+++.++.+++..+.....+
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 284 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELC 284 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHH
Confidence 4 23566788899999999998877665444
No 79
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=37.06 E-value=1.2e+02 Score=28.68 Aligned_cols=91 Identities=14% Similarity=-0.036 Sum_probs=56.8
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHH
Q 043601 42 SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLG-VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSK 120 (488)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 120 (488)
.++.+-..+.+.+-+++.-- ....+.. ..+.| +++|....+....+-.-....++|.+.|..++.+-|......-..
T Consensus 138 ~~I~lK~E~lnptGSfKdRg-A~~~i~~-A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~ 215 (430)
T 4aec_A 138 ANIAAKLEIMEPCCSVKDRI-GYSMVTD-AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRV 215 (430)
T ss_dssp SEEEEEEGGGSTTSBTTHHH-HHHHHHH-HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CeEEEEECCCCCCCCHHHHH-HHHHHHH-HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHH
Confidence 35555444323334555421 1222222 34556 466755555566677788888889999987666655555556677
Q ss_pred HHhhcCCeEEEEcc
Q 043601 121 QVKDSSPKLVVTVP 134 (488)
Q Consensus 121 ~l~~~~~~~vi~~~ 134 (488)
.++..++++++++.
T Consensus 216 ~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 216 LLKAFGAELVLTDP 229 (430)
T ss_dssp HHHHTTCEEEEECG
T ss_pred HHHHCCCEEEEECC
Confidence 88999999999974
No 80
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=36.42 E-value=1.3e+02 Score=26.95 Aligned_cols=92 Identities=15% Similarity=0.005 Sum_probs=54.9
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHH
Q 043601 42 SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLG-VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSK 120 (488)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 120 (488)
.++.+-..+.+.+-+|+.--. ...+.. +.+.| +++|....+....+-.-....++|.+.|..++.+-|......-..
T Consensus 30 ~~v~~K~E~~~ptGSfK~R~a-~~~l~~-a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 107 (322)
T 1z7w_A 30 GRVAAKLEMMEPCSSVKDRIG-FSMISD-AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRI 107 (322)
T ss_dssp SEEEEEEGGGSTTSBTHHHHH-HHHHHH-HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred ceEEEEecccCCCCchHHHHH-HHHHHH-HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 456664443234445554322 122333 34455 456643344455677777778888899986666555444455567
Q ss_pred HHhhcCCeEEEEccc
Q 043601 121 QVKDSSPKLVVTVPE 135 (488)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (488)
.++..++++++++..
T Consensus 108 ~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 108 ILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 889999999998754
No 81
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=36.09 E-value=1.4e+02 Score=28.69 Aligned_cols=81 Identities=9% Similarity=-0.036 Sum_probs=59.4
Q ss_pred hhccHHHHHHhhHHh-hhhhhcCCCCcEEEEecchhhHHhHHHHHHHHhhCCceEEEcCC-CCHHHHHHHHHhcCccEEE
Q 043601 210 ILTHKNFIASSLMTA-MDQELAGALDYVTLCVLPMFHVFGLSFVVYAQLQKGNCVVSMRK-FDLETALRAIEKYRVTHWW 287 (488)
Q Consensus 210 ~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~l~~~~~t~l~ 287 (488)
.+|.+.+...+.... .-...+..+++++...++-..- +...+++++..|+..+.+++ ...+++...+++.++..++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 478888876632211 1222356788988888776533 33677899999999999965 6789999999999999999
Q ss_pred ecHHH
Q 043601 288 VVPPI 292 (488)
Q Consensus 288 ~~p~~ 292 (488)
+.+..
T Consensus 106 ~~~~~ 110 (503)
T 4fuq_A 106 CDPSK 110 (503)
T ss_dssp ECGGG
T ss_pred ECchh
Confidence 87653
No 82
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=35.92 E-value=1.6e+02 Score=26.31 Aligned_cols=91 Identities=9% Similarity=-0.035 Sum_probs=54.4
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHH
Q 043601 42 SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGV-TKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSK 120 (488)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 120 (488)
.++.+-..+.+.+-+|+.-- +..+...+.+.|. ++|+.|.. ...+-.-....++|...|..++.+-|...+..-..
T Consensus 31 ~~i~~K~E~~~ptgSfK~R~--a~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 107 (313)
T 2q3b_A 31 ADIVAKLEFFNPANSVKDRI--GVAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRM 107 (313)
T ss_dssp SEEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred cEEEEEehhcCCCCcHHHHH--HHHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 35555443323455666533 2222233344453 56666655 55566666777778899986665544444445566
Q ss_pred HHhhcCCeEEEEccc
Q 043601 121 QVKDSSPKLVVTVPE 135 (488)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (488)
.++..++++++++..
T Consensus 108 ~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 108 LLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEeCCC
Confidence 788999999998863
No 83
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=35.84 E-value=1.3e+02 Score=27.10 Aligned_cols=60 Identities=23% Similarity=0.255 Sum_probs=38.7
Q ss_pred CCCCCCEEEEEcCCCc------chHHHHHH-HHHcCCeEeecCCCC------------CHHHHHHHHhhcCCeEEEEcc
Q 043601 75 GVTKHDVVLIFAPNSI------QFPICLLG-VIAIGGIATTANPVY------------TVSELSKQVKDSSPKLVVTVP 134 (488)
Q Consensus 75 g~~~g~~V~i~~~n~~------~~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 134 (488)
-+++||+|+|++|.+. +-+-.... +-..|..++.-+.-. ..+++..++.+-.+++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999998763 11211122 224577766543221 246788888899999999975
No 84
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=35.37 E-value=1.2e+02 Score=32.28 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=71.1
Q ss_pred cCCCceEEEeCCC-------CcceeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCcchH--HHHHHHHHcCCeEee
Q 043601 39 SYGSKSALIDADS-------GESLTFSQFKSIVIKVSHGFR-HLGVTKHDVVLIFAPNSIQFP--ICLLGVIAIGGIATT 108 (488)
Q Consensus 39 ~~p~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~-~~g~~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~v~ 108 (488)
..|+.+|++-..+ +-.+|.+.+...+........ ..++.++|++....|-...+- ..++..+..|+..+.
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 4577888753222 256899988766544332222 347889999988888654332 346778889998887
Q ss_pred cCCCCCHHHHHHHHhhcCCeEEEEccccHHHH
Q 043601 109 ANPVYTVSELSKQVKDSSPKLVVTVPELWERV 140 (488)
Q Consensus 109 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 140 (488)
.+ ......+...+++.++.++...+.....+
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 332 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAI 332 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHH
Confidence 64 57788999999999999999887665554
No 85
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=34.54 E-value=93 Score=20.10 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=35.7
Q ss_pred eeeCcEEe-----eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q 043601 425 IKCNGFQV-----ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVAN 484 (488)
Q Consensus 425 i~~~G~~v-----~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~ 484 (488)
+.+.|... .||..+.++++|..+.|-.... .+.|..+++ ..+.++|.+.+.+
T Consensus 6 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~-------~~~v~~~~~-~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 6 VGVTGMTCAACSNSVEAALMNVNGVFKASVALLQN-------RADVVFDPN-LVKEEDIKEEIED 62 (74)
T ss_dssp EEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGT-------EEEEEECTT-TCCHHHHHHHHHH
T ss_pred EEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCC-------EEEEEECCC-CCCHHHHHHHHHH
Confidence 44455555 8899999999999988865433 345555443 4578888887764
No 86
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=34.21 E-value=1.2e+02 Score=29.85 Aligned_cols=99 Identities=8% Similarity=0.046 Sum_probs=66.4
Q ss_pred CCCceEEEe---CCCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH--HHHHHHHcCCeEeecC
Q 043601 40 YGSKSALID---ADSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI--CLLGVIAIGGIATTAN 110 (488)
Q Consensus 40 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l~ 110 (488)
.|+.+|++. +..| -.+|...+..... ......++.+++++....+....... .+++.+..|+..++.+
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 299 (580)
T 3etc_A 223 KNEDICLVYFSSGTAGFPKMVEHDNTYPLGHIL---TAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYD 299 (580)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEETTHHHHHHH---HHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCccEEEeccHHHHHHHH---HHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEec
Confidence 456677643 2222 3466654433222 22223578899988888777655433 3678889999888775
Q ss_pred -CCCCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 111 -PVYTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 111 -~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
..++...+...+++.++..++..+.....+.
T Consensus 300 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 331 (580)
T 3etc_A 300 YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLI 331 (580)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCeEEEccHHHHHHHH
Confidence 5678889999999999999998877666554
No 87
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=34.18 E-value=1.1e+02 Score=28.28 Aligned_cols=60 Identities=13% Similarity=0.001 Sum_probs=38.5
Q ss_pred HHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCC-----CCHHHHHHHHhhcC--CeEEEE
Q 043601 70 GFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPV-----YTVSELSKQVKDSS--PKLVVT 132 (488)
Q Consensus 70 ~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~vi~ 132 (488)
.|...++++||.|.+-.+.... ..-++...|+.++.++.+ .+.+.+...+..-+ .++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 3445578899998876654433 344567789877666532 36788887774334 666664
No 88
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=33.89 E-value=91 Score=19.76 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=34.6
Q ss_pred eeeCcEEe-----eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q 043601 425 IKCNGFQV-----ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVAN 484 (488)
Q Consensus 425 i~~~G~~v-----~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~ 484 (488)
+++.|... .||..+.+.++|.++.|-.... .+.|.. + ...+.++|.+.+.+
T Consensus 6 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~-------~~~v~~-~-~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 6 LQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE-------QAVVSY-H-GETTPQILTDAVER 61 (69)
T ss_dssp EEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT-------EEEEEE-C-TTCCHHHHHHHHHH
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC-------EEEEEE-C-CCCCHHHHHHHHHH
Confidence 34455555 8899999999999988854332 234444 2 35678888888764
No 89
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=33.76 E-value=76 Score=21.57 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=29.1
Q ss_pred ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCC
Q 043601 54 SLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGG 104 (488)
Q Consensus 54 ~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (488)
.+.+.++.+ .+.+.+..+++.|.++|..+.....+...+...|.
T Consensus 23 ~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 23 NIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp ECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 455555543 34444667778888888887777666666777775
No 90
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=33.55 E-value=1.4e+02 Score=29.30 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=63.1
Q ss_pred cceeHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEEcCCCcchH-HHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcC
Q 043601 53 ESLTFSQFKSIVIKVSHGFR-----HLGVTKHDVVLIFAPNSIQFP-ICLLGVIAIGGIATTANPVYTVSELSKQVKDSS 126 (488)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~-----~~g~~~g~~V~i~~~n~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 126 (488)
-.+|.+.+...+..++..+. ...+...+++....+...... ..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 46899999888887777664 245677888887777665543 346778888988887654444566778899999
Q ss_pred CeEEEEccccHHH
Q 043601 127 PKLVVTVPELWER 139 (488)
Q Consensus 127 ~~~vi~~~~~~~~ 139 (488)
+.+++..+.....
T Consensus 273 ~t~~~~~P~~l~~ 285 (562)
T 3ite_A 273 VTHAGIVPSLLDQ 285 (562)
T ss_dssp CCEEEECHHHHHH
T ss_pred CCEEEcCHHHHhh
Confidence 9999887765443
No 91
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=31.82 E-value=1.8e+02 Score=26.42 Aligned_cols=91 Identities=10% Similarity=-0.091 Sum_probs=53.9
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHH
Q 043601 42 SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLG-VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSK 120 (488)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 120 (488)
.++.+-..+.+.+-+|+..-. ...+.. +.+.| +++|+.|.... .+-.-....++|...|..++.+-|......-..
T Consensus 42 ~~v~~K~E~~~ptGSfKdR~a-~~~l~~-a~~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 118 (343)
T 2pqm_A 42 TRILVKLEYFNPMSSVKDRVG-FNIVYQ-AIKDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQM 118 (343)
T ss_dssp CEEEEEEGGGSTTSBTHHHHH-HHHHHH-HHHHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred cEEEEEeccCCCCCChHHHHH-HHHHHH-HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 456664443344556665422 122333 33345 36776665544 355666667777889986555444444455566
Q ss_pred HHhhcCCeEEEEccc
Q 043601 121 QVKDSSPKLVVTVPE 135 (488)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (488)
.++..++++++++..
T Consensus 119 ~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 119 IMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEECCC
Confidence 888999999998863
No 92
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=31.75 E-value=1.7e+02 Score=26.06 Aligned_cols=92 Identities=12% Similarity=-0.020 Sum_probs=54.3
Q ss_pred CCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHH
Q 043601 41 GSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGV-TKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELS 119 (488)
Q Consensus 41 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 119 (488)
+.++.+-..+.+.+-+|+.--.. ..+. .+.+.|. ++|+.|.. ...+-.-....++|...|..++.+-|...+..-.
T Consensus 28 g~~i~~K~E~~~ptgSfK~R~a~-~~l~-~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~ 104 (308)
T 2egu_A 28 SADVYLKLEFMNPGSSVKDRIAL-AMIE-AAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERR 104 (308)
T ss_dssp SCEEEEEEGGGSTTSBTHHHHHH-HHHH-HHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHH
T ss_pred CCEEEEEecccCCCCChHHHHHH-HHHH-HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 34566644433345566643221 2222 3334453 56666554 5555666677777888998665544444444556
Q ss_pred HHHhhcCCeEEEEccc
Q 043601 120 KQVKDSSPKLVVTVPE 135 (488)
Q Consensus 120 ~~l~~~~~~~vi~~~~ 135 (488)
..++..++++++++..
T Consensus 105 ~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 105 NLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEECCC
Confidence 6779999999998864
No 93
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=30.76 E-value=1.7e+02 Score=26.95 Aligned_cols=62 Identities=8% Similarity=0.009 Sum_probs=40.2
Q ss_pred cCCCCCCEEEEEcCCCcc------hHHHHHHHH-HcCCeEeecCCCC------------CHHHHHHHHhhcCCeEEEEcc
Q 043601 74 LGVTKHDVVLIFAPNSIQ------FPICLLGVI-AIGGIATTANPVY------------TVSELSKQVKDSSPKLVVTVP 134 (488)
Q Consensus 74 ~g~~~g~~V~i~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 134 (488)
.-+++||+|+|++|.+.- -+-.....+ ..|..++.-+... ..+++...+.+-++++|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 367899999999998752 122222222 3587776543211 146777888888899999975
Q ss_pred c
Q 043601 135 E 135 (488)
Q Consensus 135 ~ 135 (488)
.
T Consensus 118 G 118 (371)
T 3tla_A 118 G 118 (371)
T ss_dssp C
T ss_pred c
Confidence 3
No 94
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=30.58 E-value=1.6e+02 Score=26.69 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=39.0
Q ss_pred CCCCCCEEEEEcCCCcc------hHHHHHHHH-HcCCeEeecCCCC------------CHHHHHHHHhhcCCeEEEEccc
Q 043601 75 GVTKHDVVLIFAPNSIQ------FPICLLGVI-AIGGIATTANPVY------------TVSELSKQVKDSSPKLVVTVPE 135 (488)
Q Consensus 75 g~~~g~~V~i~~~n~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 135 (488)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-+... ..+++...+.+-++++|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47889999999998842 122222222 3577766532211 1467778888889999999753
No 95
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=30.45 E-value=1.9e+02 Score=26.19 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCCCCCEEEEEcCCCcch------HHHHHHHH-HcCCeEeecCCCC------------CHHHHHHHHhhcCCeEEEEcc
Q 043601 75 GVTKHDVVLIFAPNSIQF------PICLLGVI-AIGGIATTANPVY------------TVSELSKQVKDSSPKLVVTVP 134 (488)
Q Consensus 75 g~~~g~~V~i~~~n~~~~------~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 134 (488)
-+++||+|+|++|.+.-- +-.....+ ..|..++.-+... ..+++...+.+-++++|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 478899999999887632 21222222 3577766543211 246777888888999999975
No 96
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=30.27 E-value=1.9e+02 Score=26.00 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=49.7
Q ss_pred ceeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEE
Q 043601 54 SLTFSQFKSIVIKVS---HGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLV 130 (488)
Q Consensus 54 ~~Ty~el~~~~~~la---~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (488)
.+++.+......... +.|+..++++|++|+|...-+.-.+++++|....|+.++.++. +.+. ..+.+..+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEE
Confidence 466766544333222 3345668999999999988666666666666666776665543 2333 456778888887
Q ss_pred EEc
Q 043601 131 VTV 133 (488)
Q Consensus 131 i~~ 133 (488)
+-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 743
No 97
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=29.68 E-value=2.5e+02 Score=24.81 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=52.6
Q ss_pred CceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCC--EEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHH
Q 043601 42 SKSALIDADSGESLTFSQFKSIVIKVSHGFRHLG-VTKHD--VVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSEL 118 (488)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~g~--~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 118 (488)
.++.+-..+.+.+-+|+.- .+..+...+.+.| +++|+ .|.. ...+-.-....+++.+.|..++.+-|......-
T Consensus 24 ~~v~~K~E~~~ptGSfK~R--~a~~~l~~a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k 100 (304)
T 1ve1_A 24 AEVWVKLEGLNPGGSIKDR--PAWYMIKDAEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEER 100 (304)
T ss_dssp CEEEEEEGGGSTTSBTTHH--HHHHHHHHHHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHH
T ss_pred CEEEEEecccCCCCcHHHH--HHHHHHHHHHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 3555544332334455542 2222222333445 45666 4444 555566666777788999866554444444555
Q ss_pred HHHHhhcCCeEEEEccc
Q 043601 119 SKQVKDSSPKLVVTVPE 135 (488)
Q Consensus 119 ~~~l~~~~~~~vi~~~~ 135 (488)
...++..++++++++..
T Consensus 101 ~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 101 KRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHHHTTCEEEEECTT
T ss_pred HHHHHHcCCEEEEECCC
Confidence 66888999999998764
No 98
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=29.52 E-value=2.3e+02 Score=25.97 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=38.8
Q ss_pred HcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCC----CCHHHHHHHHhhc--CCeEEEEcc
Q 043601 73 HLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPV----YTVSELSKQVKDS--SPKLVVTVP 134 (488)
Q Consensus 73 ~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~vi~~~ 134 (488)
..++++||.|.+..+....+. .++...|+.++.++.+ .+.+.+...++.. ++++|+...
T Consensus 66 ~l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 66 VAGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HTTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HcCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 335678999888777665544 3444578877666543 4678888887764 567776653
No 99
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=28.30 E-value=1.5e+02 Score=26.53 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=46.4
Q ss_pred ceeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcC-CCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeE
Q 043601 54 SLTFSQFKSIVIK---VSHGFRHLGVTKHDVVLIFAP-NSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKL 129 (488)
Q Consensus 54 ~~Ty~el~~~~~~---la~~L~~~g~~~g~~V~i~~~-n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 129 (488)
.+++.+....... .-+.|...++++|++|+|... -..-.+++.+| ...|+..+.+. +.+. ...+++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4677766543222 123345578999999999974 44555555555 46688665553 3444 56677788887
Q ss_pred EEEc
Q 043601 130 VVTV 133 (488)
Q Consensus 130 vi~~ 133 (488)
++..
T Consensus 200 ~i~~ 203 (321)
T 3tqh_A 200 CINY 203 (321)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7643
No 100
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=27.64 E-value=1.5e+02 Score=22.93 Aligned_cols=45 Identities=18% Similarity=0.043 Sum_probs=32.6
Q ss_pred eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhcC
Q 043601 433 ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDSQ 487 (488)
Q Consensus 433 ~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l~ 487 (488)
++...+.++|+|.+|..+.. ...+.+.|..+ +.+++.+++.+++.
T Consensus 84 ~~~~~l~~~peV~~~~~vtG-----~~d~~~~v~~~-----d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 84 SALAKLESLDEVTEAYYTTG-----HYSIFIKVMCR-----SIDALQHVLINKIQ 128 (152)
T ss_dssp HHHHHHHTCTTEEEEEEESS-----SCSEEEEEEES-----CHHHHHHHHHHTTT
T ss_pred HHHHHHhCCcCeEEEEEEec-----ccCEEEEEEEC-----CHHHHHHHHHHHhh
Confidence 67788999999999998732 22455666554 67888888876553
No 101
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=27.36 E-value=2.1e+02 Score=25.69 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=54.8
Q ss_pred ceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHH
Q 043601 43 KSALIDADSGESLTFSQFKSIVIKVSHGFRHLG-VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQ 121 (488)
Q Consensus 43 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 121 (488)
++.+-..+.+.+=+++.-- ....+.. ..+.| +++++.|.. +..+-.-....+++.+.|..++.+-|...+......
T Consensus 38 ~v~~K~E~~~ptGSfK~R~-a~~~l~~-a~~~g~l~~~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~ 114 (325)
T 3dwg_A 38 RLWAKLEDRNPTGSIKDRP-AVRMIEQ-AEADGLLRPGATILE-PTSGNTGISLAMAARLKGYRLICVMPENTSVERRQL 114 (325)
T ss_dssp EEEEEETTSSTTSBTTHHH-HHHHHHH-HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHH
T ss_pred EEEEEECCCCCCCChHHHH-HHHHHHH-HHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 4555554333444555421 1222222 33444 466776655 445667777778888889876655555555556678
Q ss_pred HhhcCCeEEEEccc
Q 043601 122 VKDSSPKLVVTVPE 135 (488)
Q Consensus 122 l~~~~~~~vi~~~~ 135 (488)
++..++++++++..
T Consensus 115 ~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 115 LELYGAQIIFSAAE 128 (325)
T ss_dssp HHHHTCEEEEECST
T ss_pred HHHCCCEEEEECCC
Confidence 89999999999853
No 102
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=27.05 E-value=2e+02 Score=26.10 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=48.1
Q ss_pred ceeHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEcCC-CcchHHHHHHHHHcCCe-EeecCCCCCHHHHHHHHhhcCC
Q 043601 54 SLTFSQFKSIV--IKVS-HGFRH-LGVTKHDVVLIFAPN-SIQFPICLLGVIAIGGI-ATTANPVYTVSELSKQVKDSSP 127 (488)
Q Consensus 54 ~~Ty~el~~~~--~~la-~~L~~-~g~~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~ 127 (488)
.+++.+..... -..| +.|.+ .++++|++|+|.... ..-.+++.+|- ..|+. ++..+..-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46777654321 1122 23434 489999999999974 45555555554 46874 4445444444445566788899
Q ss_pred eEEEEc
Q 043601 128 KLVVTV 133 (488)
Q Consensus 128 ~~vi~~ 133 (488)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 888854
No 103
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=26.36 E-value=2e+02 Score=21.45 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=37.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeec--CCCCCHHHHH
Q 043601 68 SHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTA--NPVYTVSELS 119 (488)
Q Consensus 68 a~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~ 119 (488)
+.+|.+.|+.++..+.+...+..+.+-++-=+++.|...+.+ .+..+....+
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~R 100 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARK 100 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHH
Confidence 567778899888888888888888888888888888744333 3456654443
No 104
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=25.54 E-value=51 Score=28.85 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCC
Q 043601 65 IKVSHGFRHLGVTKHDVVLIFAPNS 89 (488)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n~ 89 (488)
..|...|+++|+++||.|.+++.=+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567789999999999999988643
No 105
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=24.11 E-value=2.3e+02 Score=22.46 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=13.4
Q ss_pred HHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcC
Q 043601 71 FRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIG 103 (488)
Q Consensus 71 L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 103 (488)
|.+.|+.+...+.+...+..+.+-++-=++++|
T Consensus 92 L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG 124 (161)
T 1oft_A 92 LRRAGLNRERILLLQAKDNAAALALSCEALRLG 124 (161)
T ss_dssp HHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTT
T ss_pred HHHcCCCHHHEEEEECCChHHHHHHHHHHHhcC
Confidence 333344433333333334444444444444444
No 106
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=24.10 E-value=2.5e+02 Score=26.33 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=21.9
Q ss_pred EEcCCCcchHHH-HHHHHHcCCeEeecCCCCCHH--HHHHHHhhcCCeEEEEccc
Q 043601 84 IFAPNSIQFPIC-LLGVIAIGGIATTANPVYTVS--ELSKQVKDSSPKLVVTVPE 135 (488)
Q Consensus 84 i~~~n~~~~~~~-~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~vi~~~~ 135 (488)
+++.++.+.+.. +.++...|-.++..++.+... .+...+...+++.++++..
T Consensus 101 v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~ 155 (430)
T 3ri6_A 101 LALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM 155 (430)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 344444433322 223334444444444444321 1222445556666666543
No 107
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=24.00 E-value=2.5e+02 Score=25.30 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCC----CCHHHHHHHHhhcCCeEEEEc
Q 043601 77 TKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPV----YTVSELSKQVKDSSPKLVVTV 133 (488)
Q Consensus 77 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 133 (488)
++||.|.+..+....+.-...++...|+.++.++.+ .+.+.+...+.. ++++|++.
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 466766654443333323333334556655554432 345666655543 45555543
No 108
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=23.74 E-value=2.3e+02 Score=25.69 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=36.9
Q ss_pred CCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCC-------CCHHHHHHHHhhcCCeEEEEcc
Q 043601 76 VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPV-------YTVSELSKQVKDSSPKLVVTVP 134 (488)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~~ 134 (488)
.++||.|.+..+.- .-...++...|+.++.++.+ .+.+.+...++..++++|+...
T Consensus 106 ~~~gd~vl~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 106 TSPGDQILVQEPVY---NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp SCTTCEEEECSSCC---HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCCeEEECCCCc---HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 45788877654433 33444566778877776653 6788888888766777776543
No 109
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=23.57 E-value=58 Score=28.62 Aligned_cols=24 Identities=25% Similarity=0.438 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCC
Q 043601 66 KVSHGFRHLGVTKHDVVLIFAPNS 89 (488)
Q Consensus 66 ~la~~L~~~g~~~g~~V~i~~~n~ 89 (488)
.|...|+++|+++||.|.+++.=+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 356788999999999999988643
No 110
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=23.56 E-value=59 Score=28.74 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=24.2
Q ss_pred CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Q 043601 52 GESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNS 89 (488)
Q Consensus 52 ~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~ 89 (488)
+..+|-++| ...|+++|+++||.|.+.+.=+
T Consensus 19 ~~~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 19 RELVTRDRL-------ASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CCEECHHHH-------HHHHHHHTCCTTCEEEEEECST
T ss_pred CCCcCHHHH-------HHHHHHcCCCCCCEEEEEechH
Confidence 456776665 5578889999999999988644
No 111
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=23.12 E-value=3e+02 Score=24.44 Aligned_cols=92 Identities=15% Similarity=-0.049 Sum_probs=55.4
Q ss_pred CCceEEEeCCCCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHH
Q 043601 41 GSKSALIDADSGESLTFSQFKSIVIKVSHGFRHLGV-TKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELS 119 (488)
Q Consensus 41 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 119 (488)
+.++.+-....+.+-||+.--. ...+. .+.+.|. ++|+.|.. ...+-.-....++|.+.|..++.+-|......-.
T Consensus 25 g~~i~~K~E~~~ptGSfK~R~a-~~~i~-~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~ 101 (316)
T 1y7l_A 25 NGNVVVKIEGRNPSYSVKCRIG-ANMVW-QAEKDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERK 101 (316)
T ss_dssp TTCEEEEETTSSGGGBTHHHHH-HHHHH-HHHHTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHH
T ss_pred CCEEEEEeccCCCCCChHHHHH-HHHHH-HHHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHH
Confidence 3456665544344556665433 22233 3344454 56665554 4456666777778889998655544444444556
Q ss_pred HHHhhcCCeEEEEccc
Q 043601 120 KQVKDSSPKLVVTVPE 135 (488)
Q Consensus 120 ~~l~~~~~~~vi~~~~ 135 (488)
..++..++++++++..
T Consensus 102 ~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 102 RLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEeCCC
Confidence 6889999999998764
No 112
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=23.10 E-value=1.1e+02 Score=20.16 Aligned_cols=35 Identities=3% Similarity=0.078 Sum_probs=18.7
Q ss_pred HHHHHhhccccCCCceEEEeCCCCcceeHHHHHHHHH
Q 043601 29 MVHFLFRNSASYGSKSALIDADSGESLTFSQFKSIVI 65 (488)
Q Consensus 29 l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~ 65 (488)
|...|....+.+|+...++.. ++..+|+.+.+-..
T Consensus 32 L~~~l~~~~~~~~~~~V~I~a--D~~~~y~~vv~vmd 66 (74)
T 2jwk_A 32 VTQLSRQEFDKDNNTLFLVGG--AKEVPYEEVIKALN 66 (74)
T ss_dssp HHHHHHHHHHHCTTCCEEEEE--CTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEEc--CCCCCHHHHHHHHH
Confidence 344444444556666666655 45556666555433
No 113
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=22.60 E-value=1.3e+02 Score=27.30 Aligned_cols=57 Identities=11% Similarity=-0.043 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEcccc
Q 043601 79 HDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPEL 136 (488)
Q Consensus 79 g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 136 (488)
.+.|.. +..+-.-....++|.+.|..++.+-|...+..-...++..++++++++...
T Consensus 76 ~~~vv~-~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 76 PKAVVT-HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp CSCEEE-ECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEE-eCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 334333 345666677778899999866555555555566778899999999998654
No 114
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=22.44 E-value=2.4e+02 Score=25.61 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=40.6
Q ss_pred HHHHH--cCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEc
Q 043601 69 HGFRH--LGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTV 133 (488)
Q Consensus 69 ~~L~~--~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 133 (488)
+.|.+ .++++|++|+|...-..-.+++.+|-...|+.++.+.. +.+.+ ..++..+++.++..
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDA 238 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEET
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEec
Confidence 34555 68999999999998555566666665443876555543 34443 44567888888753
No 115
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=22.29 E-value=2.1e+02 Score=31.69 Aligned_cols=98 Identities=9% Similarity=0.125 Sum_probs=69.1
Q ss_pred CCCceEEEe---CCCC----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH-HHHHHHHcCCeEeecCC
Q 043601 40 YGSKSALID---ADSG----ESLTFSQFKSIVIKVSHGFRHLGVTKHDVVLIFAPNSIQFPI-CLLGVIAIGGIATTANP 111 (488)
Q Consensus 40 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~-~~lA~~~~G~~~v~l~~ 111 (488)
.|+..|.+- +..| -.+|.+.+... .......++.+++++..+.+-+.+..+ -+++.+..|+..+..++
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 467777642 2222 46898887532 122234578899999988887766543 46788888998887765
Q ss_pred C--CCHHHHHHHHhhcCCeEEEEccccHHHHh
Q 043601 112 V--YTVSELSKQVKDSSPKLVVTVPELWERVK 141 (488)
Q Consensus 112 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 141 (488)
. .++..+...+++.++.+++..+.....+.
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~ 712 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLT 712 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHH
Confidence 3 57889999999999999998877666553
No 116
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=21.85 E-value=2.4e+02 Score=25.68 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=31.8
Q ss_pred HcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCC-----CCHHHHHHHHhhcCCeEEEEc
Q 043601 73 HLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPV-----YTVSELSKQVKDSSPKLVVTV 133 (488)
Q Consensus 73 ~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 133 (488)
..++++||.|.+..+.... ..-++...|+.++.++.+ .+.+.+...++. ++++|+..
T Consensus 73 ~~~~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 73 ALGIGEGDEVITPSMTWVS---TLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HTTCCTTCEEEEESSSCHH---HHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HcCCCCCCEEEeCCCccHh---HHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 3346778877765554332 234455667765555422 456677666653 55666654
No 117
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=21.56 E-value=2.4e+02 Score=25.24 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=48.1
Q ss_pred cceeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeE
Q 043601 53 ESLTFSQFKSIVIK---VSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKL 129 (488)
Q Consensus 53 ~~~Ty~el~~~~~~---la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 129 (488)
..+++.+....... .-+.|...++++|++|+|...-..-.+++.+|- ..|+.++.+.. +.+.+ ..++..+++.
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCE
Confidence 35677765432221 123455568999999999987666666666655 56886665543 34443 3567788887
Q ss_pred EEEc
Q 043601 130 VVTV 133 (488)
Q Consensus 130 vi~~ 133 (488)
++..
T Consensus 214 ~i~~ 217 (340)
T 3s2e_A 214 AVNA 217 (340)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7743
No 118
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=21.44 E-value=2.3e+02 Score=20.20 Aligned_cols=59 Identities=8% Similarity=0.090 Sum_probs=41.4
Q ss_pred cceeeCcEEe-eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHh
Q 043601 423 ELIKCNGFQV-ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVAN 484 (488)
Q Consensus 423 d~i~~~G~~v-~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~ 484 (488)
|+.|..+-.+ ++...|..+++|..+-+....-....+.+...+ +|..++.+++++.+.+
T Consensus 12 DVlKPh~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkiti---EG~~id~d~I~~~IE~ 71 (97)
T 2raq_A 12 DILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTI---QGNDLDFDEITRAIES 71 (97)
T ss_dssp EEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEE---ECSSCCHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEE---EecCCCHHHHHHHHHH
Confidence 5566766667 999999999999988776654433333344433 3567899999988765
No 119
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.32 E-value=2.8e+02 Score=22.79 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=40.2
Q ss_pred CCEEEEEcCC-Cc-ch--HHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEEEEccc
Q 043601 79 HDVVLIFAPN-SI-QF--PICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLVVTVPE 135 (488)
Q Consensus 79 g~~V~i~~~n-~~-~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 135 (488)
..+|.+.+.. .. +. .+....+-..|.-++.+..+.+.+++...++..++++|..+.-
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 3355555433 32 22 2333334467899999999999999999999999999997653
No 120
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=21.15 E-value=76 Score=24.57 Aligned_cols=40 Identities=5% Similarity=-0.113 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCC
Q 043601 65 IKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGG 104 (488)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 104 (488)
.++...|.+.|+.++..|.++|..+.....+...+...|.
T Consensus 66 ~~l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~ 105 (148)
T 2fsx_A 66 AELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGI 105 (148)
T ss_dssp HHHHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTC
T ss_pred HHHHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCC
Confidence 3344445555777888899999988888888888888886
No 121
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=20.72 E-value=1.6e+02 Score=25.56 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcc-hHHHHHHHHHcCC
Q 043601 65 IKVSHGFRHLGVTKHDVVLIFAPNSIQ-FPICLLGVIAIGG 104 (488)
Q Consensus 65 ~~la~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~ 104 (488)
..+...+.+.|+.+++.|.++|..+.. ...+.+.+...|.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~ 112 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGV 112 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCC
Confidence 456677778889999999999988766 5666666777776
No 122
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=20.59 E-value=4.8e+02 Score=23.62 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=36.2
Q ss_pred CCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhc---CCeEEEEcc
Q 043601 76 VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDS---SPKLVVTVP 134 (488)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~vi~~~ 134 (488)
.++||.|.+..|... ...-++...|+.+++++. .+.+.+...++.. ++++|++..
T Consensus 124 ~~~gd~V~~~~p~~~---~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHA---SIIDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCH---HHHHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCH---HHHHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 467888877655433 334455667888777764 5677888888765 567777654
No 123
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.21 E-value=3e+02 Score=24.72 Aligned_cols=74 Identities=11% Similarity=0.010 Sum_probs=45.3
Q ss_pred ceeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecCCCCCHHHHHHHHhhcCCeEE
Q 043601 54 SLTFSQFKSIVIKV---SHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTANPVYTVSELSKQVKDSSPKLV 130 (488)
Q Consensus 54 ~~Ty~el~~~~~~l---a~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 130 (488)
.+++.+........ -+.|.+.++++|++|+|...-.+-.+++.+|- ..|+.++.+..+-. .+ ..+++.+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~--~~-~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEH--KK-QDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSST--TH-HHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHH--HH-HHHHhcCCCee
Confidence 46676654222211 23456668999999999987444555555554 56887666554332 22 34566888888
Q ss_pred E
Q 043601 131 V 131 (488)
Q Consensus 131 i 131 (488)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 124
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=20.10 E-value=4.1e+02 Score=23.63 Aligned_cols=56 Identities=9% Similarity=0.040 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcCCCcchHHHHHHHHHcCCeEeecC--CC----CCHHHHHHHHhh----cCCeEEEEcc
Q 043601 76 VTKHDVVLIFAPNSIQFPICLLGVIAIGGIATTAN--PV----YTVSELSKQVKD----SSPKLVVTVP 134 (488)
Q Consensus 76 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~vi~~~ 134 (488)
+++||.|.+..+.... ...++...|+.++.++ .+ .+.+.+...++. -+++++++..
T Consensus 90 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYS---SYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHH---HHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchH---HHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 4678888776554433 3333667788776665 22 367788887764 3566666543
No 125
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=20.08 E-value=1.4e+02 Score=23.16 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=29.6
Q ss_pred Ee-eHhHHHhcCCCeeeeEEEeecCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhhc
Q 043601 431 QV-ELEGVLVSHPEILDAVVIPFPDPEAGEVPIAYVVRSPNSSLTKEDVQKFVANDS 486 (488)
Q Consensus 431 ~v-~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~l 486 (488)
.+ ++...+.++|+|.+|..+.- ...+.+.|..+ +.+++.+++ +++
T Consensus 79 ~~~~~~~~l~~~p~V~~~~~~tG-----~~d~~~~v~~~-----d~~~l~~~~-~~l 124 (151)
T 2cyy_A 79 KYSEVASNLAKYPEIVEVYETTG-----DYDMVVKIRTK-----NSEELNNFL-DLI 124 (151)
T ss_dssp CHHHHHHHHHTCTTEEEEEECSS-----SSSEEEEEEES-----SHHHHHHHH-HHH
T ss_pred cHHHHHHHHhcCCCeeEeeEecC-----CCCEEEEEEEC-----CHHHHHHHH-HHH
Confidence 44 77788889999999987632 22455555554 567777766 443
No 126
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=20.08 E-value=1.5e+02 Score=25.70 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=38.9
Q ss_pred ceeHHHHHHHH------HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHcCCe
Q 043601 54 SLTFSQFKSIV------IKVSHGFRHLGVTKHDVVLIFAPNSIQFPICLLGVIAIGGI 105 (488)
Q Consensus 54 ~~Ty~el~~~~------~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 105 (488)
.+.|.++.+.. ..+...+.+.|+.+++.|.++|..+.....+.+++..+|..
T Consensus 192 ~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~ 249 (271)
T 1e0c_A 192 NFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYP 249 (271)
T ss_dssp ECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCS
T ss_pred eccHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCC
Confidence 45566654321 34455566778999999999999999988888888899974
Done!