BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043602
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ACF|A Chain A, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|B Chain B, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|C Chain C, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|D Chain D, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
Length = 182
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 168 TGFEIEQTKNWAAPTNCSTLAEESVSAQRSTKVATAEYN-RQGGWVQ--FDEAAVGEIQQ 224
TG+ ++ T N A C + +E+ SA V A + + GG V ++A G +Q+
Sbjct: 13 TGY-LKLTDNVA--IKCVDIVKEAQSANPMVIVNAANIHLKHGGGVAGALNKATNGAMQK 69
Query: 225 QRQCFVERNATWQMMQYC---------SCPHQTAPTPTAMDQIQLIKGAHD----LSIFI 271
+ +++ N + C C H P A + IQL+K A++ I +
Sbjct: 70 ESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILL 129
Query: 272 SPYKENG 278
+P G
Sbjct: 130 APLLSAG 136
>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 80
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 74 RWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132
R TPEQL L Y + P+ + HI ++ ++ + V WFQN +ARER+
Sbjct: 21 RTTITPEQLEILYQKYLLDS-NPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERK 74
>pdb|2WAS|B Chain B, Structure Of The Fungal Type I Fas Ppt Domain
pdb|2WAS|C Chain C, Structure Of The Fungal Type I Fas Ppt Domain
pdb|2WAS|F Chain F, Structure Of The Fungal Type I Fas Ppt Domain
Length = 122
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 210 GWVQFDEAAVGEIQQQRQCFVERNATWQMMQYCSC 244
G V D + I + F+ERN T Q ++YCS
Sbjct: 2 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSA 36
>pdb|2WAS|A Chain A, Structure Of The Fungal Type I Fas Ppt Domain
pdb|2WAS|D Chain D, Structure Of The Fungal Type I Fas Ppt Domain
pdb|2WAS|E Chain E, Structure Of The Fungal Type I Fas Ppt Domain
pdb|2WAT|A Chain A, Structure Of The Fungal Type I Fas Ppt Domain In Complex
With Coa
pdb|2WAT|B Chain B, Structure Of The Fungal Type I Fas Ppt Domain In Complex
With Coa
pdb|2WAT|C Chain C, Structure Of The Fungal Type I Fas Ppt Domain In Complex
With Coa
pdb|2WAT|D Chain D, Structure Of The Fungal Type I Fas Ppt Domain In Complex
With Coa
pdb|2WAT|E Chain E, Structure Of The Fungal Type I Fas Ppt Domain In Complex
With Coa
pdb|2WAT|F Chain F, Structure Of The Fungal Type I Fas Ppt Domain In Complex
With Coa
Length = 122
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 210 GWVQFDEAAVGEIQQQRQCFVERNATWQMMQYCSC 244
G V D + I + F+ERN T Q ++YCS
Sbjct: 2 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSA 36
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 210 GWVQFDEAAVGEIQQQRQCFVERNATWQMMQYCSC 244
G V D + I + F+ERN T Q ++YCS
Sbjct: 1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSA 1801
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 210 GWVQFDEAAVGEIQQQRQCFVERNATWQMMQYCSC 244
G V D + I + F+ERN T Q ++YCS
Sbjct: 1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSA 1801
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,594,767
Number of Sequences: 62578
Number of extensions: 342424
Number of successful extensions: 578
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 7
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)