Query 043602
Match_columns 352
No_of_seqs 124 out of 343
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 10:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zq3_P PRD-4, homeotic bicoid 99.8 3.2E-20 1.1E-24 138.5 4.4 65 70-139 2-66 (68)
2 2dmq_A LIM/homeobox protein LH 99.8 3.7E-20 1.3E-24 141.1 4.4 65 70-139 7-71 (80)
3 2dms_A Homeobox protein OTX2; 99.8 3.3E-20 1.1E-24 141.9 3.9 64 69-137 6-69 (80)
4 2cue_A Paired box protein PAX6 99.8 5E-20 1.7E-24 141.2 4.6 67 69-140 6-72 (80)
5 1ig7_A Homeotic protein MSX-1; 99.8 3.3E-20 1.1E-24 133.5 3.3 57 71-132 1-57 (58)
6 1jgg_A Segmentation protein EV 99.8 3E-20 1E-24 135.1 2.8 59 70-133 1-59 (60)
7 2kt0_A Nanog, homeobox protein 99.8 3.1E-20 1.1E-24 142.6 2.8 65 66-135 18-82 (84)
8 1nk2_P Homeobox protein VND; h 99.8 9.7E-20 3.3E-24 138.7 5.1 66 67-137 6-71 (77)
9 2vi6_A Homeobox protein nanog; 99.8 2.3E-20 7.8E-25 136.5 1.5 59 70-133 3-61 (62)
10 2cuf_A FLJ21616 protein; homeo 99.8 1.3E-19 4.4E-24 143.1 5.9 67 69-136 6-83 (95)
11 1ahd_P Antennapedia protein mu 99.8 3.5E-20 1.2E-24 138.6 2.5 62 70-136 2-63 (68)
12 3a01_A Homeodomain-containing 99.8 6.6E-20 2.3E-24 145.1 4.2 70 67-141 14-83 (93)
13 2h1k_A IPF-1, pancreatic and d 99.8 5.9E-20 2E-24 135.0 3.5 59 70-133 3-61 (63)
14 2da2_A Alpha-fetoprotein enhan 99.8 2.3E-20 7.9E-25 139.1 1.2 62 69-135 6-67 (70)
15 2hdd_A Protein (engrailed home 99.8 4.9E-20 1.7E-24 134.4 2.8 58 70-132 3-60 (61)
16 2da3_A Alpha-fetoprotein enhan 99.8 3.5E-20 1.2E-24 140.6 2.1 62 68-134 15-76 (80)
17 2dmu_A Homeobox protein goosec 99.8 8.1E-20 2.8E-24 136.4 3.9 62 69-135 6-67 (70)
18 3a02_A Homeobox protein arista 99.8 4.2E-20 1.4E-24 134.3 2.2 59 72-135 1-59 (60)
19 1puf_A HOX-1.7, homeobox prote 99.8 9.4E-20 3.2E-24 138.8 4.2 63 70-137 13-75 (77)
20 2dmt_A Homeobox protein BARH-l 99.8 5.6E-20 1.9E-24 140.9 2.9 61 69-134 16-76 (80)
21 2da1_A Alpha-fetoprotein enhan 99.8 3.3E-20 1.1E-24 138.2 1.4 62 69-135 6-67 (70)
22 1ftt_A TTF-1 HD, thyroid trans 99.8 5.7E-20 1.9E-24 137.1 2.7 62 70-136 2-63 (68)
23 2cra_A Homeobox protein HOX-B1 99.8 3.9E-20 1.3E-24 138.4 1.5 61 69-134 6-66 (70)
24 2k40_A Homeobox expressed in E 99.8 4.8E-20 1.7E-24 136.6 1.9 62 70-136 1-62 (67)
25 2e1o_A Homeobox protein PRH; D 99.8 1.1E-19 3.8E-24 136.0 3.7 62 69-135 6-67 (70)
26 1yz8_P Pituitary homeobox 2; D 99.8 3.5E-20 1.2E-24 138.0 0.9 63 70-137 3-65 (68)
27 1uhs_A HOP, homeodomain only p 99.8 1.4E-19 4.7E-24 136.1 4.2 61 71-136 2-63 (72)
28 2hi3_A Homeodomain-only protei 99.8 1.4E-19 4.9E-24 136.6 4.2 62 71-137 3-65 (73)
29 2l7z_A Homeobox protein HOX-A1 99.8 9.8E-20 3.4E-24 137.7 3.0 63 68-135 5-67 (73)
30 1fjl_A Paired protein; DNA-bin 99.8 1.6E-19 5.3E-24 138.5 4.1 61 70-135 18-78 (81)
31 2da6_A Hepatocyte nuclear fact 99.8 3E-19 1E-23 147.0 6.0 73 69-142 5-94 (102)
32 2djn_A Homeobox protein DLX-5; 99.8 8.8E-20 3E-24 136.5 2.0 61 69-134 6-66 (70)
33 1bw5_A ISL-1HD, insulin gene e 99.8 8.8E-20 3E-24 134.8 1.6 60 70-134 3-62 (66)
34 2da4_A Hypothetical protein DK 99.8 8.9E-20 3E-24 139.5 1.5 60 70-134 8-71 (80)
35 1b8i_A Ultrabithorax, protein 99.8 1.7E-19 5.8E-24 139.1 2.1 62 69-135 19-80 (81)
36 3rkq_A Homeobox protein NKX-2. 99.7 2.7E-19 9.3E-24 127.5 2.9 57 70-131 2-58 (58)
37 1b72_A Protein (homeobox prote 99.7 3E-19 1E-23 141.4 3.4 62 69-135 33-94 (97)
38 2da5_A Zinc fingers and homeob 99.7 2.4E-19 8.3E-24 136.4 2.7 62 69-135 6-67 (75)
39 2r5y_A Homeotic protein sex co 99.7 1.7E-19 5.7E-24 140.5 1.7 61 69-134 27-87 (88)
40 2ly9_A Zinc fingers and homeob 99.7 2.5E-19 8.6E-24 134.7 2.4 63 68-135 4-66 (74)
41 3a03_A T-cell leukemia homeobo 99.7 3.6E-19 1.2E-23 128.4 2.9 54 75-133 2-55 (56)
42 2m0c_A Homeobox protein arista 99.7 3.1E-19 1.1E-23 133.6 2.0 62 70-136 9-70 (75)
43 1wh5_A ZF-HD homeobox family p 99.7 5E-19 1.7E-23 137.4 2.7 59 69-132 16-78 (80)
44 1akh_A Protein (mating-type pr 99.7 5.6E-19 1.9E-23 128.2 1.9 57 70-131 5-61 (61)
45 2dn0_A Zinc fingers and homeob 99.7 2.8E-19 9.5E-24 135.9 0.2 60 71-135 9-68 (76)
46 1puf_B PRE-B-cell leukemia tra 99.7 9.7E-19 3.3E-23 131.5 3.0 62 70-136 1-65 (73)
47 2ecc_A Homeobox and leucine zi 99.7 8.4E-19 2.9E-23 137.5 2.0 65 71-140 4-68 (76)
48 1wh7_A ZF-HD homeobox family p 99.7 9.9E-19 3.4E-23 136.4 2.2 59 68-132 15-78 (80)
49 2ecb_A Zinc fingers and homeob 99.7 2.4E-18 8.3E-23 137.6 3.9 60 73-137 14-73 (89)
50 1b72_B Protein (PBX1); homeodo 99.7 2.2E-18 7.4E-23 133.1 3.2 64 70-138 1-67 (87)
51 1k61_A Mating-type protein alp 99.7 3.4E-18 1.1E-22 124.0 2.5 55 73-132 1-58 (60)
52 1x2n_A Homeobox protein pknox1 99.7 5.2E-18 1.8E-22 127.5 3.6 61 69-134 6-69 (73)
53 2dmp_A Zinc fingers and homeob 99.7 3.9E-18 1.3E-22 134.2 3.0 61 72-137 15-75 (89)
54 1lfb_A Liver transcription fac 99.7 1.7E-18 5.9E-23 140.2 0.7 67 69-136 8-91 (99)
55 3nar_A ZHX1, zinc fingers and 99.7 2.7E-18 9.4E-23 136.0 1.7 62 68-134 23-84 (96)
56 1du6_A PBX1, homeobox protein 99.7 2.1E-18 7.3E-23 126.5 0.8 58 70-132 3-63 (64)
57 2e19_A Transcription factor 8; 99.7 1.1E-17 3.8E-22 125.2 1.9 56 72-132 5-60 (64)
58 1au7_A Protein PIT-1, GHF-1; c 99.7 8.5E-18 2.9E-22 142.6 1.3 60 69-133 86-145 (146)
59 2cqx_A LAG1 longevity assuranc 99.7 4.3E-18 1.5E-22 129.8 -0.6 60 69-133 7-67 (72)
60 1e3o_C Octamer-binding transcr 99.7 9.7E-18 3.3E-22 143.6 1.5 61 68-133 99-159 (160)
61 1mnm_C Protein (MAT alpha-2 tr 99.7 2.5E-17 8.6E-22 127.9 3.0 57 70-131 27-86 (87)
62 2dmn_A Homeobox protein TGIF2L 99.7 4.1E-17 1.4E-21 126.7 4.2 64 69-137 6-72 (83)
63 2xsd_C POU domain, class 3, tr 99.6 1.5E-17 5E-22 143.9 0.8 62 69-135 98-159 (164)
64 3d1n_I POU domain, class 6, tr 99.6 3.8E-17 1.3E-21 138.4 3.2 60 68-132 91-150 (151)
65 1le8_B Mating-type protein alp 99.6 3.3E-17 1.1E-21 126.8 2.5 58 72-134 4-64 (83)
66 2l9r_A Homeobox protein NKX-3. 99.6 1.2E-17 4.1E-22 127.6 -0.3 55 76-135 10-64 (69)
67 2d5v_A Hepatocyte nuclear fact 99.6 4.8E-17 1.6E-21 138.6 1.6 63 67-134 94-156 (164)
68 3nau_A Zinc fingers and homeob 99.6 6.2E-17 2.1E-21 124.7 2.0 52 77-133 11-62 (66)
69 3l1p_A POU domain, class 5, tr 99.6 1.4E-16 4.7E-21 136.2 1.4 60 69-133 95-154 (155)
70 1wi3_A DNA-binding protein SAT 99.6 2.4E-16 8.2E-21 123.5 1.8 56 70-130 7-63 (71)
71 1x2m_A LAG1 longevity assuranc 99.6 3.3E-16 1.1E-20 119.3 0.4 49 79-132 9-58 (64)
72 3k2a_A Homeobox protein MEIS2; 99.5 8.5E-16 2.9E-20 115.3 1.3 57 76-137 4-63 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 1.7E-15 5.8E-20 135.5 -0.8 63 70-133 115-194 (194)
74 2h8r_A Hepatocyte nuclear fact 99.4 1.1E-13 3.6E-18 127.0 2.9 60 70-130 142-218 (221)
75 1mh3_A Maltose binding-A1 home 99.3 1.5E-13 5.3E-18 125.0 0.8 57 70-131 365-421 (421)
76 2da7_A Zinc finger homeobox pr 99.2 1.6E-12 5.4E-17 101.9 1.6 48 77-129 12-59 (71)
77 2lk2_A Homeobox protein TGIF1; 99.2 2.7E-12 9.2E-17 103.5 2.9 59 75-138 10-71 (89)
78 2nzz_A Penetratin conjugated G 98.7 3.2E-09 1.1E-13 73.9 1.0 25 117-141 1-25 (37)
79 2ys9_A Homeobox and leucine zi 73.1 0.91 3.1E-05 35.6 0.6 38 82-124 18-55 (70)
80 2rgt_A Fusion of LIM/homeobox 59.6 0.11 3.9E-06 43.5 -7.5 29 69-98 135-163 (169)
81 1jko_C HIN recombinase, DNA-in 59.4 2.2 7.5E-05 27.5 0.3 43 76-128 5-47 (52)
82 1hlv_A CENP-B, major centromer 58.7 5.4 0.00019 31.1 2.5 51 72-130 3-53 (131)
83 2glo_A Brinker CG9653-PA; prot 58.3 4.1 0.00014 28.5 1.5 46 73-124 2-47 (59)
84 2lv7_A Calcium-binding protein 57.5 22 0.00074 27.2 5.7 52 70-123 23-78 (100)
85 1fi6_A EH domain protein REPS1 55.9 3.8 0.00013 30.4 1.1 42 75-120 1-46 (92)
86 1tc3_C Protein (TC3 transposas 50.4 7.5 0.00026 24.2 1.7 40 76-125 5-44 (51)
87 3hug_A RNA polymerase sigma fa 49.3 8.1 0.00028 28.9 2.0 40 76-125 37-76 (92)
88 3i5g_B Myosin regulatory light 47.9 26 0.00089 28.0 4.9 38 72-109 5-46 (153)
89 2elh_A CG11849-PA, LD40883P; s 46.0 10 0.00035 28.4 2.1 43 71-123 17-59 (87)
90 3mzy_A RNA polymerase sigma-H 40.2 13 0.00045 28.6 2.0 38 76-124 109-146 (164)
91 2o8x_A Probable RNA polymerase 39.1 9 0.00031 26.4 0.8 39 76-124 15-53 (70)
92 1c07_A Protein (epidermal grow 38.7 6.9 0.00023 29.2 0.1 42 75-120 2-47 (95)
93 2x48_A CAG38821; archeal virus 36.7 6.6 0.00023 26.4 -0.2 42 73-124 10-53 (55)
94 1eh2_A EPS15; calcium binding, 35.3 18 0.00063 28.3 2.1 44 73-120 5-51 (106)
95 2jn6_A Protein CGL2762, transp 34.7 14 0.00049 27.6 1.3 41 74-123 3-44 (97)
96 2lhi_A Calmodulin, serine/thre 34.6 12 0.00042 30.6 1.0 36 74-109 2-41 (176)
97 1je8_A Nitrate/nitrite respons 34.1 6.7 0.00023 29.1 -0.6 45 70-125 15-59 (82)
98 1fse_A GERE; helix-turn-helix 33.2 8.8 0.0003 26.7 -0.1 41 74-125 9-49 (74)
99 1s7o_A Hypothetical UPF0122 pr 30.9 22 0.00074 28.4 1.9 45 76-130 22-66 (113)
100 3c57_A Two component transcrip 29.8 7.3 0.00025 29.7 -1.0 38 76-124 27-64 (95)
101 1p4w_A RCSB; solution structur 29.6 16 0.00054 28.7 0.8 40 74-124 32-71 (99)
102 3i5g_C Myosin catalytic light 29.2 19 0.00065 29.0 1.3 34 76-109 2-41 (159)
103 3j04_B Myosin regulatory light 28.0 48 0.0017 24.6 3.3 47 77-125 1-51 (143)
104 2pmy_A RAS and EF-hand domain- 28.0 9.4 0.00032 27.7 -0.7 50 70-123 14-67 (91)
105 2rnj_A Response regulator prot 27.7 7.1 0.00024 29.2 -1.4 39 75-124 28-66 (91)
106 2mys_C Myosin; muscle protein, 27.5 37 0.0013 25.1 2.6 45 77-123 2-50 (149)
107 1u78_A TC3 transposase, transp 26.7 25 0.00087 26.9 1.5 41 75-125 5-45 (141)
108 2qko_A Possible transcriptiona 25.7 19 0.00064 28.9 0.7 53 73-131 24-77 (215)
109 1xsv_A Hypothetical UPF0122 pr 25.6 27 0.00092 27.7 1.5 45 76-130 25-69 (113)
110 2joj_A Centrin protein; N-term 25.2 17 0.0006 24.6 0.3 33 77-109 1-37 (77)
111 1rp3_A RNA polymerase sigma fa 24.9 27 0.00092 28.7 1.5 40 76-125 187-226 (239)
112 1x3u_A Transcriptional regulat 24.5 8.1 0.00028 27.4 -1.5 37 77-124 17-53 (79)
113 1iq3_A Ralbp1-interacting prot 24.2 10 0.00035 29.7 -1.2 50 70-123 9-62 (110)
114 1or7_A Sigma-24, RNA polymeras 23.9 24 0.00082 28.3 1.0 39 77-125 141-179 (194)
115 1j7q_A CAVP, calcium vector pr 23.8 36 0.0012 23.8 1.8 43 74-118 5-51 (86)
116 2opo_A Polcalcin CHE A 3; calc 23.4 18 0.00062 25.3 0.1 44 76-122 4-51 (86)
117 2kgr_A Intersectin-1; structur 23.3 20 0.00067 27.8 0.3 34 73-106 4-41 (111)
118 2ovk_B RLC, myosin regulatory 22.8 71 0.0024 24.1 3.4 38 71-108 4-45 (153)
119 3fwb_A Cell division control p 22.6 44 0.0015 25.1 2.2 38 72-109 12-53 (161)
120 1ku3_A Sigma factor SIGA; heli 21.7 22 0.00075 25.3 0.3 38 76-123 10-51 (73)
121 1wdc_B Scallop myosin; calcium 21.7 64 0.0022 24.4 2.9 48 75-124 10-61 (156)
122 2jpc_A SSRB; DNA binding prote 21.6 13 0.00044 25.2 -0.9 35 80-125 2-36 (61)
123 3lph_A Protein REV; helix-loop 21.6 38 0.0013 26.7 1.6 37 82-137 18-54 (72)
124 2p7v_B Sigma-70, RNA polymeras 21.5 22 0.00077 24.9 0.3 38 76-123 5-46 (68)
125 2rn7_A IS629 ORFA; helix, all 20.7 40 0.0014 25.5 1.6 46 74-123 4-51 (108)
126 1avs_A Troponin C; muscle cont 20.3 38 0.0013 23.9 1.3 45 76-122 13-61 (90)
127 3qqa_A CMER; alpha-helical, he 20.1 61 0.0021 25.5 2.6 41 82-128 25-65 (216)
No 1
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=3.2e-20 Score=138.49 Aligned_cols=65 Identities=22% Similarity=0.394 Sum_probs=60.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhhhc
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQME 139 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq~e 139 (352)
.++.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+...+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kk~~~~~~~ 66 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKLA----LGTAQVKIWFKNRRRRHKIQSDQHKD 66 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cCHHHhhHhhHHHHHHHHHHhccccc
Confidence 578999999999999999999999 999999999999996 99999999999999999998775543
No 2
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-20 Score=141.07 Aligned_cols=65 Identities=23% Similarity=0.370 Sum_probs=60.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhhhc
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQME 139 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq~e 139 (352)
.+|.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||+.+++..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~~~~~ 71 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAINH-NPDAKDLKQLAQKTG----LTKRVLQVWFQNARAKFRRNLLRQEN 71 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CCHHHhhHccHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999 999999999999995 99999999999999999998765443
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=3.3e-20 Score=141.95 Aligned_cols=64 Identities=25% Similarity=0.382 Sum_probs=59.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
..+|.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|++.+.+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTR-YPDIFMREEVALKIN----LPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHhhhhhHHHhHHhhHHHHcc
Confidence 3678999999999999999999999 999999999999996 999999999999999999876643
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=5e-20 Score=141.22 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=61.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhhhcC
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMES 140 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq~e~ 140 (352)
..++.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+...+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTH-YPDVFARERLAAKID----LPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 4789999999999999999999999 999999999999996 999999999999999999988765543
No 5
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=3.3e-20 Score=133.52 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHH
Q 043602 71 VSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 71 rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKR 132 (352)
+++|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQ-YLSIAERAEFSSSLS----LTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHhhhhhhHhhhhhcc
Confidence 57999999999999999999999 999999999999996 9999999999999999986
No 6
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=3e-20 Score=135.12 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQK 133 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRK 133 (352)
.+|.|+.||++|+.+||..|..++ ||+..++.+||..|+ |++.+|++||||||+|+||+
T Consensus 1 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 1 VRRYRTAFTRDQLGRLEKEFYKEN-YVSRPRRCELAAQLN----LPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHhhHHHHhHhhcc
Confidence 368999999999999999999999 999999999999996 99999999999999999875
No 7
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-20 Score=142.61 Aligned_cols=65 Identities=26% Similarity=0.381 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 66 TPPVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 66 ~~p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
.++..++.|+.||.+||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQK-YLSLQQMQELSNILN----LSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHhh
Confidence 3345789999999999999999999999 999999999999996 9999999999999999998654
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=9.7e-20 Score=138.72 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 67 PPVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 67 ~p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
++..++.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++....
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQR-YLSAPEREHLASLIR----LTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhcchhhhhccc
Confidence 334788999999999999999999999 999999999999996 999999999999999999876643
No 9
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=2.3e-20 Score=136.53 Aligned_cols=59 Identities=25% Similarity=0.337 Sum_probs=52.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQK 133 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRK 133 (352)
.+++|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+||+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQK-YLSLQQMQELSSILN----LSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHhhHHhHHhhcchhhc
Confidence 468999999999999999999999 999999999999996 99999999999999999875
No 10
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.3e-19 Score=143.13 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=62.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-----------hcCCCCCCceeeccccchhhHHHHHHh
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLR-----------RFGKIEGKNVFYWFQNHKARERQKRRR 136 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~-----------~~G~LsEsqVqvWFQNRRAReKRKrRr 136 (352)
-.+|.|+.||++||.+||..|..++ ||+..+|++||..|+ .++.|++.+|++||||||+|+|++.+.
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~-yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQ-YPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 3679999999999999999999999 999999999999997 555699999999999999999988775
No 11
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=3.5e-20 Score=138.57 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=58.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHh
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRR 136 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRr 136 (352)
.+|.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNR-YLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCC-CCCHHHHHHHHHHHC----cCHhhhhHHhHHHHhHHhHhccc
Confidence 578999999999999999999999 999999999999996 99999999999999999987653
No 12
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=6.6e-20 Score=145.05 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhhhcCC
Q 043602 67 PPVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESS 141 (352)
Q Consensus 67 ~p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq~e~a 141 (352)
++..+++|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++...+.++.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~~~~~~~ 83 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQK-YLASAERAALARGLK----MTDAQVKTWFQNRRTKWRRQTAEEREAE 83 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHTTT----CCHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CChhhcccccHhhhhhhhhhhHHHHHHH
Confidence 345789999999999999999999999 999999999999996 9999999999999999999887655543
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.78 E-value=5.9e-20 Score=135.00 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQK 133 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRK 133 (352)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNK-YISRPRRVELAVMLN----LTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cCHHHhhHHHHhhhhhhhhh
Confidence 578999999999999999999999 999999999999996 99999999999999999875
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-20 Score=139.06 Aligned_cols=62 Identities=27% Similarity=0.467 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
..++.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANA-YPKDDEFEQLSNLLN----LPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CCHHHhHHhhHhhhHHHhhccc
Confidence 4789999999999999999999999 999999999999995 9999999999999999988654
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.78 E-value=4.9e-20 Score=134.36 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=52.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKR 132 (352)
.+|+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENR-YLTERRRQQLSSELG----LNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHHHHHhhhhcccccc
Confidence 578999999999999999999999 999999999999996 9999999999999999986
No 16
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=3.5e-20 Score=140.57 Aligned_cols=62 Identities=32% Similarity=0.479 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 68 PVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 68 p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
...+|.|+.||++||.+||..|..++ ||+.++|++||..|+ |++.+|++||||||+|+||+.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDS-NPTRKMLDHIAHEVG----LKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----cCHHHhHHHhHHHHHhHhhhc
Confidence 34789999999999999999999999 999999999999996 999999999999999998754
No 17
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.1e-20 Score=136.40 Aligned_cols=62 Identities=24% Similarity=0.389 Sum_probs=58.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
..++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETK-YPDVGTREQLARKVH----LREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----CCHHHeehccccccccccccCC
Confidence 3678999999999999999999999 999999999999996 9999999999999999987543
No 18
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.77 E-value=4.2e-20 Score=134.33 Aligned_cols=59 Identities=24% Similarity=0.404 Sum_probs=50.2
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 72 SSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 72 R~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
.+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+
T Consensus 1 g~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 1 GSHMTFTSFQLEELEKAFSRTH-YPDVFTREELAMKIG----LTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ----CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHC----
T ss_pred CCCcccCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHC----cCHHHHHHHhhhhhhhhHhhcc
Confidence 3699999999999999999999 999999999999996 9999999999999999998764
No 19
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.77 E-value=9.4e-20 Score=138.80 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=59.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|+..+..
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLFNM-YLTRDRRYEVARLLN----LTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhhhhc
Confidence 678999999999999999999999 999999999999996 999999999999999999987754
No 20
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.6e-20 Score=140.92 Aligned_cols=61 Identities=21% Similarity=0.204 Sum_probs=57.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
..++.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESLG----LSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHeeeccHHHHHHhhccc
Confidence 4789999999999999999999999 999999999999995 999999999999999998754
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-20 Score=138.21 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=58.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
..++.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINN-SPSEEQIKEMADKSG----LPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHHC----CCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHhC----CCHHHHHHHhhhhhHHHhhhcc
Confidence 3679999999999999999999999 999999999999995 9999999999999999987643
No 22
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=5.7e-20 Score=137.12 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=58.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHh
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRR 136 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRr 136 (352)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQK-YLSAPEREHLASMIH----LTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHhHHHhHHHhhhhhhhhhH
Confidence 478999999999999999999999 999999999999996 99999999999999999987654
No 23
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=3.9e-20 Score=138.42 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
..++.|+.||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANK-FITKDKRRKISAATS----LSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----CCHHHhhHhhHhHHHHhcccC
Confidence 4688999999999999999999999 999999999999995 999999999999999998754
No 24
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-20 Score=136.59 Aligned_cols=62 Identities=26% Similarity=0.476 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHh
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRR 136 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRr 136 (352)
.+++|+.||++|+.+||..|..++ ||+.++|.+||..|+ |++.+|++||||||+|+|++.+.
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNC-YPGIDILEDLAQKLN----LELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----cCHHHhhHhhHhHHHHHhHhchh
Confidence 368999999999999999999999 999999999999996 99999999999999999986653
No 25
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.1e-19 Score=135.96 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
..++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQK-YLSPPERKRLAKMLQ----LSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHC----CCHHHhhHhhHhhHhhcCCCCC
Confidence 4678999999999999999999999 999999999999996 9999999999999999998654
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.77 E-value=3.5e-20 Score=138.01 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNR-YPDMSTREEIAVWTN----LTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCS-SCCTTTTTHHHHHTT----SCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHhHHHHHHhhcc
Confidence 578999999999999999999999 999999999999996 999999999999999999877643
No 27
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=136.06 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHh
Q 043602 71 VSSRWNPTPEQLRTLEDLYRR-GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRR 136 (352)
Q Consensus 71 rR~Rw~FT~eQLqiLE~lF~~-~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRr 136 (352)
.+.|+.||++|+.+||..|.. ++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHC----cCHHHhhHHhHHHHHHHhhhccC
Confidence 478999999999999999996 88 999999999999996 99999999999999999987753
No 28
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=136.58 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=57.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 71 VSSRWNPTPEQLRTLEDLYRR-GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 71 rR~Rw~FT~eQLqiLE~lF~~-~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
++.|+.||++|+.+||..|.. ++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~~~----l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEAG----LTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHhccCC
Confidence 578999999999999999995 88 999999999999996 999999999999999999877543
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.77 E-value=9.8e-20 Score=137.73 Aligned_cols=63 Identities=25% Similarity=0.335 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 68 PVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 68 p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
...++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNK-FITKDKRRRISATTN----LSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHT----SCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCC-CcCHHHHHHHHHHHC----CCHHHHHHHHHHHhHHHHHHhc
Confidence 34789999999999999999999999 999999999999996 9999999999999999987543
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=1.6e-19 Score=138.47 Aligned_cols=61 Identities=25% Similarity=0.387 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFERTQ-YPDIYTREELAQRTN----LTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHhhhhhhhcc
Confidence 678999999999999999999999 999999999999996 9999999999999999998765
No 31
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=147.03 Aligned_cols=73 Identities=21% Similarity=0.414 Sum_probs=65.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------------cC----CCCCCceeeccccchhhHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRR-------------FG----KIEGKNVFYWFQNHKARER 131 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~-------------~G----~LsEsqVqvWFQNRRAReK 131 (352)
-.+|.|+.||++||.+||+.|..++ ||+.++|++||..|+. || .|+|.+|+|||||||+|+|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4789999999999999999999999 9999999999999953 34 7999999999999999999
Q ss_pred HHHHhhhcCCC
Q 043602 132 QKRRRQMESSP 142 (352)
Q Consensus 132 RKrRrq~e~a~ 142 (352)
++.+..+....
T Consensus 84 r~~~~~~~~~~ 94 (102)
T 2da6_A 84 FRQKLAMDAYS 94 (102)
T ss_dssp HHHHHHHSSSS
T ss_pred HhhHhhhcccc
Confidence 98887766644
No 32
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.8e-20 Score=136.49 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
..+++|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQ-YLALPERAELAASLG----LTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHSS----CCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHhC----CCHHHHHHHHHHHhhhhcccC
Confidence 4789999999999999999999999 999999999999995 999999999999999998754
No 33
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=8.8e-20 Score=134.84 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
.+++|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANP-RPDALMKEQLVEMTG----LSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHHHHHhHHHHHHHhHHh
Confidence 578999999999999999999999 999999999999996 999999999999999998754
No 34
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.9e-20 Score=139.53 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRG----TRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~----~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
.+|.|+.||.+||.+||..|..+ + ||+.++|++||..|+ |++.+|++||||||+|+|+..
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~-yp~~~~r~~La~~lg----L~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLG-SVCREKIEAVATELN----VDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCS-HHHHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCC-CcCHHHHHHHHHHhC----CCHHHhhHhHHHHHHHHhhcc
Confidence 67899999999999999999999 8 999999999999996 999999999999999998854
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=1.7e-19 Score=139.09 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
..+|.|+.||.+||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNH-YLTRRRRIEMAHALS----LTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHhhhhhhhhcc
Confidence 3678999999999999999999999 999999999999996 9999999999999999998643
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.75 E-value=2.7e-19 Score=127.54 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARER 131 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReK 131 (352)
.++.|+.||++|+.+||..|..++ ||+..++.+||..|+ |++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQR-YLSAPERDQLASVLK----LTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----cCHHHHHHhhHHhhccCC
Confidence 468999999999999999999999 999999999999996 999999999999999985
No 37
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=3e-19 Score=141.45 Aligned_cols=62 Identities=27% Similarity=0.376 Sum_probs=56.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
..++.|+.||.+||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNK-YLSRARRVEIAATLE----LNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhHHHHHHHhHHHhHHhc
Confidence 4788999999999999999999999 999999999999996 9999999999999999998765
No 38
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-19 Score=136.45 Aligned_cols=62 Identities=16% Similarity=0.405 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
..+++|..||++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+
T Consensus 6 ~~~~kr~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 6 SGPTKYKERAPEQLRALESSFAQNP-LPLDEELDRLRSETK----MTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----CCHHHhhHhhHHHHHHHHHhhh
Confidence 4557889999999999999999999 999999999999995 9999999999999999987654
No 39
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.75 E-value=1.7e-19 Score=140.46 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
..+|.|+.||.+||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNR-YLTRRRRIEIAHALS----LTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHhC----cCHHHhhHHhHHHHHHhHhhc
Confidence 3678999999999999999999999 999999999999996 999999999999999999754
No 40
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-19 Score=134.69 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 68 PVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 68 p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
+..++.|+.||++|+.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||++.
T Consensus 4 ~~~~~~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 4 PDSFGIRAKKTKEQLAELKVSYLKNQ-FPHDSEIIRLMKITG----LTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCCTTCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----cCHHHeeeCChhHhHHHHhhCc
Confidence 34678999999999999999999999 999999999999995 9999999999999999987654
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.74 E-value=3.6e-19 Score=128.41 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHH
Q 043602 75 WNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQK 133 (352)
Q Consensus 75 w~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRK 133 (352)
|.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQK-YLASAERAALAKALR----MTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcC-CcCHHHHHHHHHHhC----cCHHHhhHhhHHhhhhhccc
Confidence 5799999999999999999 999999999999996 99999999999999999985
No 42
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=3.1e-19 Score=133.62 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHh
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRR 136 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRr 136 (352)
.++.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+.
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l~----l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQKTH-YPDVYAREQLAMRTD----LTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----CCHHHHHHHhHHHHHHHHHHHhh
Confidence 578999999999999999999999 999999999999996 99999999999999999986553
No 43
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=5e-19 Score=137.38 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKR 132 (352)
..+|.|+.||++||.+||..|.. ++ ||+..+|++||..|+ |++.+|+|||||||||.|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~-yp~~~~r~~La~~lg----L~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQ-RQDDEVIQRFCQETG----VPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCC-TTTHHHHHHHHHHSC----CCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCC-CcCHHHHHHHHHHhC----CCcccccCCccccCcCCCC
Confidence 36889999999999999999999 88 999999999999995 9999999999999999875
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.73 E-value=5.6e-19 Score=128.23 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARER 131 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReK 131 (352)
.++.|+.||++|+.+||..|..++ ||+.+++.+||..|+ |++.+|++||||||+|+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQ-SLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhccC
Confidence 568999999999999999999999 999999999999996 999999999999999985
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-19 Score=135.91 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 71 VSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 71 rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
.+.|+.||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+||+++
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQ-FPGQSEVEHLTKVTG----LSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSS-SCCSHHHHHHHHHHC----CCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----CChHHhhHHhHHHhHHHHHhcc
Confidence 35699999999999999999999 999999999999995 9999999999999999988654
No 46
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.73 E-value=9.7e-19 Score=131.49 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHh
Q 043602 70 VVSSRWNPTPEQLRTLEDLY---RRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRR 136 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF---~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRr 136 (352)
++|.|+.||++|+.+||..| ..++ ||+.++|.+||..|+ |++.+|++||||||+|+|++...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhccccccc
Confidence 36899999999999999999 7888 999999999999996 99999999999999999876554
No 47
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=8.4e-19 Score=137.50 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=58.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhhhcC
Q 043602 71 VSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMES 140 (352)
Q Consensus 71 rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq~e~ 140 (352)
.+.|..||++||.+||+.|..++ ||+.++|++||..|+ |++.+|++||||||+|+|+...+-++.
T Consensus 4 g~~r~kfT~~Ql~~Le~~F~~~~-YPs~~er~~LA~~tg----Lte~qIkvWFqNrR~k~Kk~~l~w~~~ 68 (76)
T 2ecc_A 4 GSSGKRKTKEQLAILKSFFLQCQ-WARREDYQKLEQITG----LPRPEIIQWFGDTRYALKHGQLKWFRD 68 (76)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHTCCSSTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC----cCHHHhhHHhHhhHHHHHHHHHHHHHH
Confidence 36788999999999999999999 999999999999995 999999999999999999876655443
No 48
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=9.9e-19 Score=136.36 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHH
Q 043602 68 PVVVSSRWNPTPEQLRTLEDLYRR-----GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 68 p~~rR~Rw~FT~eQLqiLE~lF~~-----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKR 132 (352)
+..+|.|+.||.+||.+|| .|.. ++ ||+..+|++||..|+ |++.+|+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~-yp~~~~r~~La~~lg----L~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQ-KHDDVAVEQFCAETG----VRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCC-SSTTHHHHHHHHHSC----CCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCC-CCCHHHHHHHHHHhC----cCcCcccccccccccCCCC
Confidence 3478999999999999999 7999 88 999999999999995 9999999999999999875
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.4e-18 Score=137.60 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=54.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 73 SRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 73 ~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
+.-.||.+||.+||+.|..++ ||+..+|.+||..|+ |++.+|++||||||+|+|++.+.+
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~lg----Lte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSS-VLTDEELNRLRAQTK----LTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred hhccCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhC----cChHHCeecccccchHHHHHHHHh
Confidence 444999999999999999999 999999999999995 999999999999999998765533
No 50
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.71 E-value=2.2e-18 Score=133.09 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhhh
Q 043602 70 VVSSRWNPTPEQLRTLEDLY---RRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQM 138 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF---~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq~ 138 (352)
.+|.|+.||++|+.+||..| ..++ ||+.++|.+||..|+ |++.+|++||||||+|+|++.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhcccccc
Confidence 36899999999999999999 7888 999999999999996 9999999999999999998765443
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.70 E-value=3.4e-18 Score=124.03 Aligned_cols=55 Identities=15% Similarity=0.328 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHH
Q 043602 73 SRWNPTPEQLRTLEDLYRR---GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 73 ~Rw~FT~eQLqiLE~lF~~---~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKR 132 (352)
+|+.||++|+.+||..|.. ++ ||+.+++++||..|+ |++.+|++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~g----l~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHccccc
Confidence 4789999999999999999 88 999999999999995 9999999999999999986
No 52
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=5.2e-18 Score=127.50 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRR---GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~---~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
..++.|+.||++|+.+||..|.. ++ ||+.+++++||..|+ |++.+|++||||||+|+|+..
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHP-YPTEDEKKQIAAQTN----LTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHC----cCHHHHHHHhHHHHhhccccc
Confidence 46789999999999999999987 77 999999999999996 999999999999999998764
No 53
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-18 Score=134.23 Aligned_cols=61 Identities=13% Similarity=0.340 Sum_probs=55.2
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 72 SSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 72 R~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
.++..||++||.+||..|..++ ||+..+|++||..|+ |++.+|++||||||+|+|++.+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~~----l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSS-FPTQAELDRLRVETK----LSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cccccCCHHHHHHHHHHHccCC-CCCHHHHHHHHHHhC----CCHHhccHhhHhHHHHHHHHhHhh
Confidence 4555699999999999999999 999999999999996 999999999999999998766543
No 54
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.69 E-value=1.7e-18 Score=140.24 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------------CC---CCCCceeeccccchhhHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRF--------------GK---IEGKNVFYWFQNHKARER 131 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~--------------G~---LsEsqVqvWFQNRRAReK 131 (352)
-.+|.||.||++||.+||..|..++ ||+..+|++||..++.. .+ |++.+|+|||||||+|+|
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~-yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 3789999999999999999999999 99999999999995421 35 999999999999999997
Q ss_pred HHHHh
Q 043602 132 QKRRR 136 (352)
Q Consensus 132 RKrRr 136 (352)
++...
T Consensus 87 ~k~~~ 91 (99)
T 1lfb_A 87 FRHKL 91 (99)
T ss_dssp CCC--
T ss_pred Hhchh
Confidence 76543
No 55
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=2.7e-18 Score=135.98 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 68 PVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 68 p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
+..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||..
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQ-WPSPEEYDKLAKESG----LARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CCHHHeeecchhhhhHhhhhc
Confidence 34778999999999999999999999 999999999999995 999999999999999999854
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=2.1e-18 Score=126.47 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLY---RRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF---~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKR 132 (352)
.++.|+.||++|+.+||..| ..++ ||+.+++++||..|+ |++.+|++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~~----L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKCG----ITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999 7888 999999999999996 9999999999999999986
No 57
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-17 Score=125.24 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=52.3
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHH
Q 043602 72 SSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 72 R~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKR 132 (352)
..+..|+++||.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||||+++
T Consensus 5 ~~~~~p~~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 5 SSGQPPLKNLLSLLKAYYALNA-QPSAEELSKIADSVN----LPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CSCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTCSC
T ss_pred CCCCCccHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----cChhhcCcchhcccCCCCC
Confidence 4567789999999999999999 999999999999996 9999999999999999875
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.66 E-value=8.5e-18 Score=142.61 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQK 133 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRK 133 (352)
..+|+|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHS-KPSSQEIMRMAEELN----LEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhC----CChhhchhhhHhhhhhhhcc
Confidence 4788999999999999999999999 999999999999996 99999999999999999975
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=4.3e-18 Score=129.83 Aligned_cols=60 Identities=15% Similarity=0.308 Sum_probs=55.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLY-RRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQK 133 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF-~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRK 133 (352)
..++.|..++++|+.+||+.| ..++ ||+..+|.+||..|+ |++.+|++||||||||+|+.
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~~-yp~~~~r~~LA~~l~----l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVTK-YPDEKRLKGLSKQLD----WSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTCS-SCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHhC----CChhhcchhhhhcccCCCCC
Confidence 366788889999999999999 8888 999999999999996 99999999999999999863
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.66 E-value=9.7e-18 Score=143.64 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHH
Q 043602 68 PVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQK 133 (352)
Q Consensus 68 p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRK 133 (352)
+..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQ-KPTSEDITLIAEQLN----MEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHC----CChHHhhHhhHHhhhhhhcc
Confidence 34789999999999999999999999 999999999999996 99999999999999999874
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.66 E-value=2.5e-17 Score=127.91 Aligned_cols=57 Identities=14% Similarity=0.285 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRR---GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARER 131 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~---~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReK 131 (352)
.+++|+.||++|+.+||..|.. ++ ||+.++|++||..|+ |++.+|++||||||+|+|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~g----L~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHHC----cCHHHHHHHHHHHHhhcc
Confidence 5678999999999999999999 88 999999999999996 999999999999999987
No 62
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-17 Score=126.72 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=57.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRR---GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~---~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
..+++|+.||++|+.+||..|.. ++ ||+.++|++||..|+ |++.+|++||||||+|+|++..++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~p-YPs~~~r~~LA~~~g----Ls~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKA-YPSEEEKQMLSEKTN----LSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHC----cCHHHhhHHhhhhHhhhcHHHHHh
Confidence 46789999999999999999988 47 999999999999995 999999999999999998765543
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.65 E-value=1.5e-17 Score=143.95 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
-.+|+|+.||.+|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCP-KPSAHEITGLADSLQ----LEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----CChhhhhhhhHHhhHHHhhccC
Confidence 4788999999999999999999999 999999999999996 9999999999999999998654
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.64 E-value=3.8e-17 Score=138.36 Aligned_cols=60 Identities=18% Similarity=0.411 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHH
Q 043602 68 PVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 68 p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKR 132 (352)
...+|+|+.||.+|+.+||..|..++ ||+.++|.+||..|+ |++.+|++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNP-LPTGQEITEMAKELN----YDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHC----CCHHHhHHHHHHHHhccCC
Confidence 34788999999999999999999999 999999999999996 9999999999999999986
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.64 E-value=3.3e-17 Score=126.75 Aligned_cols=58 Identities=14% Similarity=0.278 Sum_probs=53.4
Q ss_pred CCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 72 SSRWNPTPEQLRTLEDLYRR---GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 72 R~Rw~FT~eQLqiLE~lF~~---~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
++|+.||.+|+.+||..|.. ++ ||+.++|.+||..|+ |++.+|++||||||+|+|+..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~-yP~~~~r~~La~~~g----Lt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNTS----LSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSC-CCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHHHC----CCHHHcccccHHHHccccccc
Confidence 56777999999999999999 88 999999999999996 999999999999999998753
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-17 Score=127.64 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHH
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 135 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrR 135 (352)
..|++|+.+||+.|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||+.+
T Consensus 10 ~~t~~ql~~LE~~F~~~~-yp~~~~r~~LA~~l~----Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQK-YLSAPERAHLAKNLK----LTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CChhheeecchhhhhhhhhhhh
Confidence 579999999999999999 999999999999996 9999999999999999987654
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.62 E-value=4.8e-17 Score=138.60 Aligned_cols=63 Identities=27% Similarity=0.290 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHH
Q 043602 67 PPVVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 134 (352)
Q Consensus 67 ~p~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKr 134 (352)
++..+|.|+.||++|+.+||..|..++ ||+.++|.+||..|+ |++.+|++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~la~~l~----L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENK-RPSKELQITISQQLG----LELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHC----cCHHHhhhcChhhhccccccC
Confidence 344789999999999999999999999 999999999999996 999999999999999998753
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.62 E-value=6.2e-17 Score=124.72 Aligned_cols=52 Identities=17% Similarity=0.378 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHH
Q 043602 77 PTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQK 133 (352)
Q Consensus 77 FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRK 133 (352)
-|++||.+||+.|..++ ||+.++|++||..|+ |++++|++||||||+|+|+-
T Consensus 11 ~~~~Ql~~LE~~F~~~~-YPs~~er~eLA~~tg----Lt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQ-FPDDAEVYRLIEVTG----LARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGG-SCCHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----cCHHHhhHhcccchhhhhcc
Confidence 48999999999999999 999999999999995 99999999999999999864
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.59 E-value=1.4e-16 Score=136.16 Aligned_cols=60 Identities=27% Similarity=0.431 Sum_probs=56.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQK 133 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRK 133 (352)
..+|.|+.||++|+.+||..|..++ ||+..+|.+||..|+ |++.+|++||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yps~~~r~~LA~~l~----L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSP-KPSLQQITHIANQLG----LEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCS-CCCHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCC-CCCHHHHHHHHHHcC----CChhheeeccccccccccCC
Confidence 4778999999999999999999999 999999999999996 99999999999999999874
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.4e-16 Score=123.48 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRR-GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARE 130 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~-~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRARe 130 (352)
.+|+||.||.+||.+|+..|+. +. ||+.+.|++||++|+ |++.+|++||||||.--
T Consensus 7 ~kR~RT~~s~eQL~~Lqs~f~~~~~-yPd~~~r~~La~~tG----L~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 7 GPRSRTKISLEALGILQSFIHDVGL-YPDQEAIHTLSAQLD----LPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHSC----CCHHHHHHHHHHHHHHC
T ss_pred CCCCCccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhC----CCHHHHHHhhccceeee
Confidence 5799999999999999999999 99 999999999999996 99999999999999754
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=3.3e-16 Score=119.26 Aligned_cols=49 Identities=16% Similarity=0.451 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHH
Q 043602 79 PEQLRTLEDLYR-RGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 79 ~eQLqiLE~lF~-~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKR 132 (352)
++|+.+||+.|. .++ ||+..+|.+||.+|+ |+|.||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~-yp~~~~r~~LA~~l~----LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITK-HPDEKRLEGLSKQLD----WDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCS-SCCHHHHHHHHHHHC----SCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCC-CcCHHHHHHHHHHhC----CCHHHHHHHHHHHHhccCC
Confidence 458999999995 566 999999999999996 9999999999999999975
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=8.5e-16 Score=115.32 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 76 NPTPEQLRTLEDLYR---RGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~---~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
.||++|+.+||..|. .++ ||+.++|.+||..|+ |++.+|++||||||+|.|++..++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~p-yp~~~~r~~La~~~~----l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHP-YPSEEQKKQLAQDTG----LTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHhC----cCHHHhhhhhHHHHHHHhHHHHHH
Confidence 699999999999999 899 999999999999996 999999999999999998765443
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.49 E-value=1.7e-15 Score=135.47 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------------cCC----CCCCceeeccccchhhHHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRR-------------FGK----IEGKNVFYWFQNHKARERQ 132 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~-------------~G~----LsEsqVqvWFQNRRAReKR 132 (352)
.+|.|+.||+.||.+||+.|..++ ||+..+|++||..|+. +|- |++.+|++||||||+|+|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~~-yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHC-CCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 689999999999999999999999 9999999999999972 222 9999999999999999875
Q ss_pred H
Q 043602 133 K 133 (352)
Q Consensus 133 K 133 (352)
+
T Consensus 194 ~ 194 (194)
T 1ic8_A 194 R 194 (194)
T ss_dssp -
T ss_pred C
Confidence 3
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.38 E-value=1.1e-13 Score=126.98 Aligned_cols=60 Identities=22% Similarity=0.441 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----------------CCCCCCceeeccccchhhH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRF-----------------GKIEGKNVFYWFQNHKARE 130 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~-----------------G~LsEsqVqvWFQNRRARe 130 (352)
.+|.|+.||++||.+||..|..++ ||+..+|++||..|+.. ..|+|.+|++||||||+++
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~~-YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 789999999999999999999999 99999999999999731 2489999999999999875
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.33 E-value=1.5e-13 Score=125.02 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=53.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHH
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARER 131 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReK 131 (352)
.++.|..++.+|+.+||+.|+.++ ||+..+|++||.+|+ |+++||++||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~-yp~~~~~~~la~~~~----l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQ-SLNSKEKEEVAKKCG----ITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHT----SCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCC-CcCHHHHHHHHHHHC----cCHHHhhHhhhhcccccC
Confidence 456788999999999999999999 999999999999996 999999999999999976
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.6e-12 Score=101.87 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhh
Q 043602 77 PTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKAR 129 (352)
Q Consensus 77 FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAR 129 (352)
+=++||.+||..|..++ +|+.++|++||..|+ |+.+.|++||||||++
T Consensus 12 ~~k~ql~~Lk~yF~~n~-~Ps~eei~~LA~~lg----L~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 12 PYKDHMSVLKAYYAMNM-EPNSDELLKISIAVG----LPQEFVKEWFEQRKVY 59 (71)
T ss_dssp SSTHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHhC----CCHHHHHHHHhhcccc
Confidence 45799999999999999 999999999999996 9999999999999974
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.23 E-value=2.7e-12 Score=103.52 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhhh
Q 043602 75 WNPTPEQLRTLEDLYRR---GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQM 138 (352)
Q Consensus 75 w~FT~eQLqiLE~lF~~---~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq~ 138 (352)
.-|+++|+.+|+.-|.. ++ ||+.+++.+||.+++ |++.||++||||||+|.|+...++.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~np-YPs~~ek~~LA~~tg----Lt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNA-YPSEQEKALLSQQTH----LSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGG-SCCHHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 35889999999999988 77 999999999999995 9999999999999999998766544
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.68 E-value=3.2e-09 Score=73.89 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=20.9
Q ss_pred CceeeccccchhhHHHHHHhhhcCC
Q 043602 117 KNVFYWFQNHKARERQKRRRQMESS 141 (352)
Q Consensus 117 sqVqvWFQNRRAReKRKrRrq~e~a 141 (352)
+||+|||||||||+||+.+.....+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~ 25 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDI 25 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHH
Confidence 4899999999999999888755443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.07 E-value=0.91 Score=35.55 Aligned_cols=38 Identities=18% Similarity=0.456 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 82 LRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 82 LqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
.+.|++.|...+ .+..++.+.|..+-+ |+-.+|+-||-
T Consensus 18 ~e~L~~Yy~~hk-~L~EeDl~~L~~ksk----ms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAHQ-QLRETDIPQLSQASR----LSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHTC-CCCTTHHHHHHHHTT----CCHHHHHHHHH
T ss_pred chHHHHHHHHhc-ccchhhHHHHHHHhC----CCHHHHHHHHH
Confidence 368999999999 899999999999996 99999999994
No 80
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=59.62 E-value=0.11 Score=43.50 Aligned_cols=29 Identities=0% Similarity=-0.226 Sum_probs=21.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 043602 69 VVVSSRWNPTPEQLRTLEDLYRRGTRTPSA 98 (352)
Q Consensus 69 ~~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~ 98 (352)
..+|+|+.||.+||++|+..|+.++ ||..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~-~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANP-VEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCC-CCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCC-Cccc
Confidence 4689999999999999999999999 8864
No 81
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=59.36 E-value=2.2 Score=27.47 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchh
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKA 128 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRA 128 (352)
.++++|...+-+++..+. + ..+||+.|+ |+..-|+.|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g~---s---~~~ia~~lg----vs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKGH---P---RQQLAIIFG----IGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTTC---C---HHHHHHTTS----CCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----CCHHHHHHHHHHccc
Confidence 467777777777777654 3 345888885 999999999975544
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=58.69 E-value=5.4 Score=31.06 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhH
Q 043602 72 SSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARE 130 (352)
Q Consensus 72 R~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRARe 130 (352)
++|..+|.+|-..+=+.+.... .+.. .+||+.++ |+.+.|..|..+++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g-~~~~---~~~A~~~g----vs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENP-DLRK---GEIARRFN----IPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCT-TSCH---HHHHHHHT----CCHHHHHHHHHTHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCC-CCcH---HHHHHHhC----CCHHHHHHHHhchhhhc
Confidence 4788999999877766664443 4555 13888885 99999999987766543
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=58.33 E-value=4.1 Score=28.51 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 73 SRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 73 ~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
+|..||+|....+.+++..+. .......+||..++ |+...|+.|..
T Consensus 2 ~r~~ys~efK~~~~~~~~~g~--s~~~~~~~vA~~~g----Is~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRNDN--DCKGNQRATARKYN----IHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHCT--TTTTCHHHHHHHTT----SCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHcCC--CcchHHHHHHHHHC----cCHHHHHHHHH
Confidence 466899998877766666554 31223457999996 99999999964
No 84
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=57.49 E-value=22 Score=27.18 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=40.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVFYWF 123 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWF 123 (352)
..+....+|.+|+++|.++|.. +.+|.+..+...+-..|+ ..+++..|+.+|
T Consensus 23 ~~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg--~~~~~~ei~~l~ 78 (100)
T 2lv7_A 23 SEQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLG--YMPNEVELEVII 78 (100)
T ss_dssp TTCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHT--CCCCTTTHHHHH
T ss_pred hhcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC--CCCCHHHHHHHH
Confidence 3345567999999999999985 456899998888877775 257887777655
No 85
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=55.86 E-value=3.8 Score=30.43 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCcee
Q 043602 75 WNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVF 120 (352)
Q Consensus 75 w~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVq 120 (352)
|.+|++|+..|.++|.. +.+|.+.++...+-..+ ++++..|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~ 46 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELS 46 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHH
Confidence 88999999999999986 34567777766665555 26655544
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=50.39 E-value=7.5 Score=24.24 Aligned_cols=40 Identities=5% Similarity=0.134 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQN 125 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQN 125 (352)
.+++++...+-.++..+. + ..+||+.|+ |+..-|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g~---s---~~~IA~~lg----is~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV---S---LHEMSRKIS----RSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC---C---HHHHHHHHT----CCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHhh
Confidence 567888766666776665 2 346999996 999999988743
No 87
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.28 E-value=8.1 Score=28.85 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQN 125 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQN 125 (352)
.+++.|.++|.-.|..+. . .++||+.|+ |++..|+.+...
T Consensus 37 ~L~~~~r~vl~l~~~~g~--s----~~eIA~~lg----is~~tV~~~l~r 76 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--S----TAQIATDLG----IAEGTVKSRLHY 76 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--C----HHHHHHHHT----SCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--C----HHHHHHHHC----cCHHHHHHHHHH
Confidence 467889999998887776 2 345999996 999999976543
No 88
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=47.93 E-value=26 Score=28.03 Aligned_cols=38 Identities=11% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHH
Q 043602 72 SSRWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLR 109 (352)
Q Consensus 72 R~Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~ 109 (352)
.+|..+|++|++.|.++|.. +.++.+..+...+-+.|+
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 46 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLG 46 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcC
Confidence 36778999999999999975 455789888777666664
No 89
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=45.97 E-value=10 Score=28.41 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 043602 71 VSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWF 123 (352)
Q Consensus 71 rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWF 123 (352)
++.+..||+++....-+++..+. . ..+||+.|+ |+...|+.|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g~--s----~~~iA~~~g----Is~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDGE--S----KASVARDIG----VPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHTC--C----HHHHHHHHT----CCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCC--C----HHHHHHHHC----cCHHHHHHHH
Confidence 34567899999655555666554 2 345899996 9999999996
No 90
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=40.25 E-value=13 Score=28.60 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
.+++.|..+|. .|-.+. .- ++||+.|+ |+...|+.+.+
T Consensus 109 ~L~~~~r~v~~-~~~~g~--s~----~EIA~~lg----is~~tV~~~~~ 146 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGY--SY----REIATILS----KNLKSIDNTIQ 146 (164)
T ss_dssp HSCHHHHHHHH-HHTTTC--CH----HHHHHHHT----CCHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCC--CH----HHHHHHHC----CCHHHHHHHHH
Confidence 57788888888 666655 33 35999996 99999987654
No 91
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=39.14 E-value=9 Score=26.36 Aligned_cols=39 Identities=13% Similarity=-0.087 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
.+++.|..+|.-.|..+. +. ++||..|+ ++...|+.+..
T Consensus 15 ~L~~~~r~il~l~~~~g~--s~----~eIA~~lg----is~~tv~~~~~ 53 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL--SY----ADAAAVCG----CPVGTIRSRVA 53 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC--CH----HHHHHHHT----SCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC--CH----HHHHHHHC----cCHHHHHHHHH
Confidence 367899999999887776 33 35999996 99999987543
No 92
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=38.69 E-value=6.9 Score=29.24 Aligned_cols=42 Identities=10% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCcee
Q 043602 75 WNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVF 120 (352)
Q Consensus 75 w~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVq 120 (352)
|.+|++|+..|+++|.. +.+|.+.++...+-..+ ++++..|.
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~ 47 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLA 47 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHH
Confidence 78899999999999964 44577887655554443 36655554
No 93
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=36.67 E-value=6.6 Score=26.42 Aligned_cols=42 Identities=17% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCCCCC--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 73 SRWNPT--PEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 73 ~Rw~FT--~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
.|+.++ +++...+-.++..+. + ..+||+.|+ |+...|+.|..
T Consensus 10 ~~~~l~~~~~~~~~i~~l~~~g~---s---~~eIA~~lg----is~~TV~~~l~ 53 (55)
T 2x48_A 10 VRYYVESEDDLVSVAHELAKMGY---T---VQQIANALG----VSERKVRRYLE 53 (55)
T ss_dssp EEEEECSHHHHHHHHHHHHHTTC---C---HHHHHHHHT----SCHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHH
Confidence 345677 888888888876655 2 335999996 99999988764
No 94
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=35.25 E-value=18 Score=28.26 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCcee
Q 043602 73 SRWNPTPEQLRTLEDLYRR---GTRTPSADQIQHITAQLRRFGKIEGKNVF 120 (352)
Q Consensus 73 ~Rw~FT~eQLqiLE~lF~~---~~~YPs~e~RqqIA~qL~~~G~LsEsqVq 120 (352)
..|.+|++|+..+.++|.. +.+|.+.++...+-..+ ++++..|.
T Consensus 5 ~~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~----gl~~~el~ 51 (106)
T 1eh2_A 5 SPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNS----KLPVDILG 51 (106)
T ss_dssp -CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTT----TCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHc----CCCHHHHH
Confidence 3588999999999999975 45577887655554444 36655554
No 95
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=34.67 E-value=14 Score=27.58 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 043602 74 RWNPTPEQLRTLEDLYRRG-TRTPSADQIQHITAQLRRFGKIEGKNVFYWF 123 (352)
Q Consensus 74 Rw~FT~eQLqiLE~lF~~~-~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWF 123 (352)
|..||+++....-+.+..+ . ++ +.+||..++ |+...|+.|.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g-~s----~~~ia~~~g----Is~~tl~rW~ 44 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG-AS----LQQIANDLG----INRVTLKNWI 44 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG-SC----HHHHHHHHT----SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-Ch----HHHHHHHHC----cCHHHHHHHH
Confidence 5679999887666666433 2 22 346999995 9988899885
No 96
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.63 E-value=12 Score=30.61 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHH
Q 043602 74 RWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLR 109 (352)
Q Consensus 74 Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~ 109 (352)
+..+|++|+++|.++|.. +.++.+..+...+-..|+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg 41 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLG 41 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcC
Confidence 568999999999999974 455788888777666664
No 97
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.14 E-value=6.7 Score=29.13 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQN 125 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQN 125 (352)
....-..+|+.|.++|.- |..+. .. ++||+.|+ |++..|+.+.++
T Consensus 15 ~~~~~~~Lt~~e~~vl~l-~~~g~--s~----~eIA~~l~----is~~tV~~~l~r 59 (82)
T 1je8_A 15 TERDVNQLTPRERDILKL-IAQGL--PN----KMIARRLD----ITESTVKVHVKH 59 (82)
T ss_dssp --CCGGGSCHHHHHHHHH-HTTTC--CH----HHHHHHHT----SCHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHH-HHcCC--CH----HHHHHHHC----cCHHHHHHHHHH
Confidence 344445699999999998 44444 33 35999996 999999876543
No 98
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.15 E-value=8.8 Score=26.71 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 043602 74 RWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQN 125 (352)
Q Consensus 74 Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQN 125 (352)
-..+|+.|.++|.- |..+. .. ++||+.|+ ++...|+.+.+.
T Consensus 9 ~~~L~~~e~~il~~-~~~g~--s~----~eIA~~l~----is~~tV~~~~~~ 49 (74)
T 1fse_A 9 KPLLTKREREVFEL-LVQDK--TT----KEIASELF----ISEKTVRNHISN 49 (74)
T ss_dssp CCCCCHHHHHHHHH-HTTTC--CH----HHHHHHHT----SCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-HHcCC--CH----HHHHHHHC----CCHHHHHHHHHH
Confidence 45689999999988 44443 23 45999996 999999876654
No 99
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=30.87 E-value=22 Score=28.42 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhH
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARE 130 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRARe 130 (352)
.+++.|.++|.-.|..+. .. ++||..|+ ++...|+.|.+.=|.|-
T Consensus 22 ~L~~~~r~vl~l~y~~g~--s~----~EIA~~lg----iS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY--SL----AEIADEFG----VSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC--CH----HHHHHHHT----CCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--CH----HHHHHHHC----cCHHHHHHHHHHHHHHH
Confidence 478999999999988877 33 35999996 99999998876444333
No 100
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.83 E-value=7.3 Score=29.70 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
.+|+.|.++|.-+ ..+. .. ++||..|+ |+...|+.+..
T Consensus 27 ~Lt~~e~~vl~l~-~~g~--s~----~eIA~~l~----is~~tV~~~l~ 64 (95)
T 3c57_A 27 GLTDQERTLLGLL-SEGL--TN----KQIADRMF----LAEKTVKNYVS 64 (95)
T ss_dssp CCCHHHHHHHHHH-HTTC--CH----HHHHHHHT----CCHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCC--CH----HHHHHHHC----cCHHHHHHHHH
Confidence 5899999999996 4444 23 45999996 99999987554
No 101
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=29.63 E-value=16 Score=28.68 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 74 RWNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 74 Rw~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
.-.+|+.|.++|+-++ .+. .. ++||+.|+ |++..|+++.+
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G~--s~----~EIA~~L~----iS~~TV~~~l~ 71 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EGF--LV----TEIAKKLN----RSIKTISSQKK 71 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HTC--CH----HHHHHHHT----SCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cCC--CH----HHHHHHHC----cCHHHHHHHHH
Confidence 5679999999998865 454 23 45999996 99999987655
No 102
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.23 E-value=19 Score=29.02 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHH
Q 043602 76 NPTPEQLRTLEDLYRR------GTRTPSADQIQHITAQLR 109 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~------~~~YPs~e~RqqIA~qL~ 109 (352)
-+|++|++.|.++|.. +.++.+..+...+-+.|+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG 41 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLG 41 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcC
Confidence 4799999999999862 345788887666666664
No 103
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=28.01 E-value=48 Score=24.55 Aligned_cols=47 Identities=4% Similarity=0.107 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 043602 77 PTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQN 125 (352)
Q Consensus 77 FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQN 125 (352)
||++|++.|.++|.. +.++.+..+...+-..|+. .+++..|...|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~--~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGK--NPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSC--CCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHh
Confidence 689999999999975 3447888877766666642 3555556655543
No 104
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=27.97 E-value=9.4 Score=27.72 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVFYWF 123 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWF 123 (352)
....-..++++++..|.++|.. +.++.+.++...+-..++ +++..|..+|
T Consensus 14 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g----~~~~~~~~~~ 67 (91)
T 2pmy_A 14 LYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELR----VRPADAEAVF 67 (91)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT----CCHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcC----cCHHHHHHHH
Confidence 3444557899999999999974 344678777666655553 5555544333
No 105
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.71 E-value=7.1 Score=29.19 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 75 WNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 75 w~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
-.+|+.|.++|.-+ ..+. ...+ ||..|+ |+...|+.+..
T Consensus 28 ~~Lt~~e~~vl~l~-~~g~--s~~e----IA~~l~----is~~tV~~~l~ 66 (91)
T 2rnj_A 28 EMLTEREMEILLLI-AKGY--SNQE----IASASH----ITIKTVKTHVS 66 (91)
T ss_dssp GGCCSHHHHHHHHH-HTTC--CTTH----HHHHHT----CCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHH-HcCC--CHHH----HHHHHC----cCHHHHHHHHH
Confidence 35788999999884 4444 4555 999996 99999987654
No 106
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=27.50 E-value=37 Score=25.08 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 043602 77 PTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVFYWF 123 (352)
Q Consensus 77 FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWF 123 (352)
+|++|++.|+++|.. +.++.+..+...+...++. .+++..|...|
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~--~~~~~~~~~l~ 50 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQ--NPTNAEINKIL 50 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHH
Confidence 789999999999963 3446788877766666541 34554555444
No 107
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=26.66 E-value=25 Score=26.92 Aligned_cols=41 Identities=5% Similarity=0.104 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 043602 75 WNPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQN 125 (352)
Q Consensus 75 w~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQN 125 (352)
..+|.++...+-.++..+. + ..+||+.|+ ++.+.|+.|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G~---s---~~~ia~~lg----is~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV---S---LHEMSRKIS----RSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC---C---HHHHHHHHT----CCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcCC---C---HHHHHHHHC----cCHHHHHHHHHc
Confidence 5688999888888887765 2 345899995 999999999864
No 108
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=25.71 E-value=19 Score=28.92 Aligned_cols=53 Identities=4% Similarity=0.049 Sum_probs=37.1
Q ss_pred CCCCCCHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHH
Q 043602 73 SRWNPTPEQ-LRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARER 131 (352)
Q Consensus 73 ~Rw~FT~eQ-LqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReK 131 (352)
+|..-|.++ |....++|...- | ......+||+..+ |+..-|++.|.||..=-.
T Consensus 24 ~r~~~~r~~Il~aa~~lf~~~G-~-~~~tv~~IA~~ag----vs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 24 AQNPERRAALVNAAIEVLAREG-A-RGLTFRAVDVEAN----VPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp ---CHHHHHHHHHHHHHHHHTC-T-TTCCHHHHHHHSS----STTTCHHHHCSCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhC-h-hhccHHHHHHHcC----CCcchHHHhCCCHHHHHH
Confidence 444555554 345667888877 5 5556788999995 999999999999775443
No 109
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.56 E-value=27 Score=27.67 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhH
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARE 130 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRARe 130 (352)
.+++.|.++|.-.|..+. .. ++||+.|+ ++...|+.+...=|.|-
T Consensus 25 ~L~~~~r~vl~l~~~~g~--s~----~EIA~~lg----iS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY--SL----SEIADTFN----VSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC--CH----HHHHHHTT----CCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--CH----HHHHHHHC----cCHHHHHHHHHHHHHHH
Confidence 478899999999888877 33 35999996 99999998765433333
No 110
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=25.17 E-value=17 Score=24.59 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHH
Q 043602 77 PTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLR 109 (352)
Q Consensus 77 FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~ 109 (352)
+|++|+..|.++|.. +.++.+..+...+-..++
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g 37 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALG 37 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhC
Confidence 578999999999964 344677777776666664
No 111
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.90 E-value=27 Score=28.69 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 043602 76 NPTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQN 125 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQN 125 (352)
.+++.|..+|.-.|..+. +- ++||+.|+ |+...|+.+...
T Consensus 187 ~L~~~~r~vl~l~~~~g~--s~----~EIA~~lg----is~~~V~~~~~r 226 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEEL--PA----KEVAKILE----TSVSRVSQLKAK 226 (239)
T ss_dssp TSCHHHHHHHHHHHTSCC--CH----HHHHHHTT----SCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCC--CH----HHHHHHhC----CCHHHHHHHHHH
Confidence 467888888888887665 33 35999996 999999876543
No 112
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=24.52 E-value=8.1 Score=27.42 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 77 PTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 77 FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
+|+.|.++|.- |..+. ... +||..|+ ++...|+.+..
T Consensus 17 L~~~e~~vl~l-~~~g~--s~~----eIA~~l~----is~~tV~~~~~ 53 (79)
T 1x3u_A 17 LSERERQVLSA-VVAGL--PNK----SIAYDLD----ISPRTVEVHRA 53 (79)
T ss_dssp HCHHHHHHHHH-HTTTC--CHH----HHHHHTT----SCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHcCC--CHH----HHHHHHC----cCHHHHHHHHH
Confidence 67889999988 54444 333 5999996 99999986654
No 113
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=24.21 E-value=10 Score=29.73 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=34.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 043602 70 VVSSRWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVFYWF 123 (352)
Q Consensus 70 ~rR~Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWF 123 (352)
.....|.+|++|...|.++|.. +.++.+.++.. ..|... ++++..|..+|
T Consensus 9 ~~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~---~~l~~~-gl~~~el~~i~ 62 (110)
T 1iq3_A 9 YPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAK---NFFTKS-KLSIPELSYIW 62 (110)
T ss_dssp CCCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHH---HHCCSS-SCSSCCHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHH---HHHHHc-CCCHHHHHHHH
Confidence 3347899999999999999975 34466766544 444433 37777766444
No 114
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=23.87 E-value=24 Score=28.28 Aligned_cols=39 Identities=10% Similarity=-0.084 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 043602 77 PTPEQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQN 125 (352)
Q Consensus 77 FT~eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQN 125 (352)
+++.|..+|.-.|-.+. +- ++||+.|+ ++...|+.+.+.
T Consensus 141 L~~~~r~vl~l~~~~g~--s~----~EIA~~lg----is~~tV~~~l~r 179 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL--SY----EEIAAIMD----CPVGTVRSRIFR 179 (194)
T ss_dssp SCHHHHHHHHHHHTTCC--CH----HHHHHHTT----SCHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC--CH----HHHHHHHC----CCHHHHHHHHHH
Confidence 56777778877776665 33 35999996 999999876543
No 115
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=23.82 E-value=36 Score=23.76 Aligned_cols=43 Identities=7% Similarity=0.137 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCc
Q 043602 74 RWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKN 118 (352)
Q Consensus 74 Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsq 118 (352)
...+|++|+..|.++|.. +.++.+..+...+-..|+. ++++..
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~--~~~~~~ 51 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQ--TYTKRE 51 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSC--CCSHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcC--CCCHHH
Confidence 456789999999999964 3457888877776666641 345444
No 116
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=23.45 E-value=18 Score=25.26 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeec
Q 043602 76 NPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVFYW 122 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvW 122 (352)
.+|++|+..|..+|.. +.++.+.++...+-..+ |.+++..|...
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~---g~~~~~~~~~~ 51 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTL---GSVTPDEVRRM 51 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTT---TTCCHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHc---CCCCHHHHHHH
Confidence 5789999999999964 33466766555544443 34555544433
No 117
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=23.28 E-value=20 Score=27.79 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q 043602 73 SRWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITA 106 (352)
Q Consensus 73 ~Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~ 106 (352)
.-|.+|++|++.|.++|.. +.+|.+.++...+-.
T Consensus 4 ~~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~ 41 (111)
T 2kgr_A 4 AEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILM 41 (111)
T ss_dssp CCSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 6799999999999999975 344667665555443
No 118
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=22.78 E-value=71 Score=24.09 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHH
Q 043602 71 VSSRWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQL 108 (352)
Q Consensus 71 rR~Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL 108 (352)
...+..+|++|++.|.++|.. +.++.+..+...+-..|
T Consensus 4 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 45 (153)
T 2ovk_B 4 APRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL 45 (153)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTT
T ss_pred CcccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHh
Confidence 346789999999999999974 34467777655554444
No 119
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.64 E-value=44 Score=25.14 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHH
Q 043602 72 SSRWNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLR 109 (352)
Q Consensus 72 R~Rw~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~ 109 (352)
..+..+|++|+..|.++|.. +.++.+..+...+-..++
T Consensus 12 ~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~ 53 (161)
T 3fwb_A 12 PLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALG 53 (161)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC
Confidence 35677999999999999975 344678887666666553
No 120
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=21.70 E-value=22 Score=25.31 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 043602 76 NPTPEQLRTLEDLYR----RGTRTPSADQIQHITAQLRRFGKIEGKNVFYWF 123 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~----~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWF 123 (352)
.+++.|.++|.-.|. .+. .- ++||..|+ ++...|+.+.
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~--s~----~eIA~~l~----is~~tV~~~~ 51 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH--TL----EEVGAYFG----VTRERIRQIE 51 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC--CH----HHHHHHHT----CCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC--CH----HHHHHHHC----CCHHHHHHHH
Confidence 478899999999996 444 22 35999996 9999998754
No 121
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=21.66 E-value=64 Score=24.45 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 043602 75 WNPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQ 124 (352)
Q Consensus 75 w~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQ 124 (352)
..+|++|+..|+++|.. +.++.+.++...+-..|+ ..+++..|...|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~ 61 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLG--RAPDDKELTAMLK 61 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHS--SCCCHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHHHH
Confidence 46899999999999964 445788887777776664 2456666666664
No 122
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.63 E-value=13 Score=25.21 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 043602 80 EQLRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQN 125 (352)
Q Consensus 80 eQLqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQN 125 (352)
.|.++|.- +..+. ...+ ||+.|+ +++..|+.+.++
T Consensus 2 re~~vl~l-~~~g~--s~~e----IA~~l~----is~~tV~~~~~~ 36 (61)
T 2jpc_A 2 RERQVLKL-IDEGY--TNHG----ISEKLH----ISIKTVETHRMN 36 (61)
T ss_dssp HHHHHHHH-HHTSC--CSHH----HHHHTC----SCHHHHHHHHHH
T ss_pred HHHHHHHH-HHcCC--CHHH----HHHHhC----CCHHHHHHHHHH
Confidence 46778877 55555 4555 999995 999999876553
No 123
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=21.58 E-value=38 Score=26.69 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchhhHHHHHHhh
Q 043602 82 LRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 137 (352)
Q Consensus 82 LqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRAReKRKrRrq 137 (352)
+.++.-+|+.++ ||+.+ =+.+-+ -|||-||++.+++.
T Consensus 18 vRiIkiLyQSNP-~P~p~----GTrqaR--------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNP-PPNPE----GTRQAR--------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCC-CCCCC----SCHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CCCCC----CchHHH--------------HHHHHHHHHHHHHH
Confidence 356777899999 99876 222222 27888888766644
No 124
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=21.52 E-value=22 Score=24.92 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 043602 76 NPTPEQLRTLEDLY----RRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWF 123 (352)
Q Consensus 76 ~FT~eQLqiLE~lF----~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWF 123 (352)
.+++.|.++|.-.| ..+. .- ++||+.|+ ++...|+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~--s~----~eIA~~lg----is~~tV~~~~ 46 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY--TL----EEVGKQFD----VTRERIRQIE 46 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC--CH----HHHHHHHT----CCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCC--CH----HHHHHHHC----cCHHHHHHHH
Confidence 47889999999998 3444 23 35999996 9999998654
No 125
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=20.71 E-value=40 Score=25.48 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHH-HHhcCCCCCCH-HHHHHHHHHHHhcCCCCCCceeecc
Q 043602 74 RWNPTPEQLRTLED-LYRRGTRTPSA-DQIQHITAQLRRFGKIEGKNVFYWF 123 (352)
Q Consensus 74 Rw~FT~eQLqiLE~-lF~~~~~YPs~-e~RqqIA~qL~~~G~LsEsqVqvWF 123 (352)
|..||+++....-+ +...+..|++. ..+.+||..++ |+...|+.|-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~g----Is~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIG----CTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT----SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHC----cCHHHHHHHH
Confidence 45789998754444 44443113442 45678999996 9999998884
No 126
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=20.33 E-value=38 Score=23.95 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeec
Q 043602 76 NPTPEQLRTLEDLYRR----GTRTPSADQIQHITAQLRRFGKIEGKNVFYW 122 (352)
Q Consensus 76 ~FT~eQLqiLE~lF~~----~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvW 122 (352)
.++++++..|.++|.. +.++.+..+...+-..++ .++++..|..+
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g--~~~~~~~~~~l 61 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG--QNPTKEELDAI 61 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTT--CCCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC--CCCCHHHHHHH
Confidence 4789999999999974 444778887776666653 13455445443
No 127
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=20.08 E-value=61 Score=25.45 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccccchh
Q 043602 82 LRTLEDLYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKA 128 (352)
Q Consensus 82 LqiLE~lF~~~~~YPs~e~RqqIA~qL~~~G~LsEsqVqvWFQNRRA 128 (352)
|....++|...- | ......+||+..+ |+..-|++.|.||-.
T Consensus 25 l~aA~~lf~~~G-~-~~~t~~~IA~~ag----vs~~tlY~~F~sK~~ 65 (216)
T 3qqa_A 25 KAVALELFLTKG-Y-QETSLSDIIKLSG----GSYSNIYDGFKSKEG 65 (216)
T ss_dssp HHHHHHHHHHTC-T-TTCCHHHHHHHHT----TSCCSSSCSCCSHHH
T ss_pred HHHHHHHHHHcC-h-hhCCHHHHHHHhC----CCHHHHHHhcCCHHH
Confidence 345667787776 4 5556788999996 999999999999874
Done!