Query 043603
Match_columns 114
No_of_seqs 174 out of 1039
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 3.3E-25 7.1E-30 152.7 10.5 92 3-99 31-138 (142)
2 COG0071 IbpA Molecular chapero 99.9 7.2E-25 1.6E-29 151.4 10.4 91 3-96 39-146 (146)
3 PRK10743 heat shock protein Ib 99.9 1.4E-24 3E-29 148.9 10.4 88 4-96 34-137 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.1E-23 2.5E-28 135.0 8.4 74 6-81 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.6E-22 3.4E-27 131.2 10.1 87 8-96 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 1.5E-22 3.3E-27 129.8 8.2 74 5-81 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 3.8E-21 8.3E-26 123.1 8.8 73 5-81 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.8 9.1E-20 2E-24 116.0 7.6 67 8-81 4-86 (86)
9 cd06479 ACD_HspB7_like Alpha c 99.8 2.4E-19 5.3E-24 113.0 6.5 72 8-81 2-81 (81)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 4.9E-19 1.1E-23 111.9 7.5 67 8-81 1-83 (83)
11 cd06498 ACD_alphaB-crystallin_ 99.8 7E-19 1.5E-23 111.5 7.5 67 9-82 2-84 (84)
12 cd06475 ACD_HspB1_like Alpha c 99.8 3.2E-18 7E-23 108.9 7.4 72 7-80 3-85 (86)
13 cd06464 ACD_sHsps-like Alpha-c 99.7 7E-18 1.5E-22 105.6 7.9 72 8-81 1-88 (88)
14 cd06476 ACD_HspB2_like Alpha c 99.7 9E-18 1.9E-22 106.2 7.4 71 9-81 2-83 (83)
15 cd06481 ACD_HspB9_like Alpha c 99.7 1.6E-17 3.4E-22 105.9 6.3 66 11-81 4-87 (87)
16 cd06482 ACD_HspB10 Alpha cryst 99.7 4.6E-17 1E-21 103.8 5.6 68 12-81 6-87 (87)
17 cd06526 metazoan_ACD Alpha-cry 99.7 7.7E-17 1.7E-21 101.5 6.5 68 12-81 5-83 (83)
18 cd06477 ACD_HspB3_Like Alpha c 99.7 3E-16 6.4E-21 99.3 7.1 69 10-80 3-82 (83)
19 KOG0710 Molecular chaperone (s 99.6 5.3E-16 1.2E-20 112.0 5.2 93 2-96 82-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.4 3.3E-13 7.2E-18 86.7 6.0 71 9-81 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.4 2.2E-12 4.8E-17 91.6 9.9 93 5-100 63-166 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.4 3.5E-12 7.7E-17 76.8 7.2 71 9-81 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 2.7E-11 5.9E-16 74.6 7.4 71 9-84 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.1 2E-09 4.3E-14 76.4 9.4 78 4-85 91-171 (177)
25 cd06463 p23_like Proteins cont 98.9 9.4E-09 2E-13 63.0 7.4 74 9-84 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 4.7E-08 1E-12 60.7 6.5 75 8-84 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 4.1E-06 8.9E-11 50.7 9.5 75 5-81 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.0 6.7E-05 1.4E-09 49.0 8.5 75 5-83 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.0 4E-05 8.7E-10 58.4 7.7 65 13-80 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 97.7 0.00026 5.6E-09 44.1 6.9 75 8-84 1-77 (84)
31 cd06488 p23_melusin_like p23_l 97.7 0.0006 1.3E-08 42.9 8.1 77 6-84 2-80 (87)
32 cd06467 p23_NUDC_like p23_like 97.5 0.0006 1.3E-08 42.2 6.9 75 7-84 1-77 (85)
33 cd06493 p23_NUDCD1_like p23_NU 97.5 0.0012 2.7E-08 41.2 7.7 75 7-84 1-77 (85)
34 cd06468 p23_CacyBP p23_like do 97.4 0.0027 5.9E-08 39.9 8.6 77 6-84 3-85 (92)
35 cd06494 p23_NUDCD2_like p23-li 96.9 0.0081 1.7E-07 38.5 7.0 77 3-85 4-84 (93)
36 PLN03088 SGT1, suppressor of 96.5 0.013 2.8E-07 45.7 7.4 78 5-84 157-236 (356)
37 cd06490 p23_NCB5OR p23_like do 96.3 0.071 1.5E-06 33.5 8.4 75 7-84 1-80 (87)
38 cd00237 p23 p23 binds heat sho 95.9 0.1 2.3E-06 34.1 8.2 76 5-84 2-79 (106)
39 KOG1309 Suppressor of G2 allel 95.7 0.021 4.6E-07 41.0 4.5 79 4-84 3-83 (196)
40 cd06492 p23_mNUDC_like p23-lik 91.9 1.8 3.9E-05 27.1 7.3 74 8-84 2-79 (87)
41 cd06482 ACD_HspB10 Alpha cryst 90.5 0.74 1.6E-05 29.1 4.5 34 50-84 9-42 (87)
42 cd06477 ACD_HspB3_Like Alpha c 90.3 0.64 1.4E-05 29.1 4.0 33 50-83 8-40 (83)
43 cd06476 ACD_HspB2_like Alpha c 89.7 0.75 1.6E-05 28.6 4.1 33 49-82 7-39 (83)
44 cd06478 ACD_HspB4-5-6 Alpha-cr 89.5 0.95 2.1E-05 28.0 4.4 33 49-82 7-39 (83)
45 cd06495 p23_NUDCD3_like p23-li 89.5 4.2 9E-05 26.4 7.9 78 4-84 4-87 (102)
46 cd06497 ACD_alphaA-crystallin_ 89.5 0.86 1.9E-05 28.5 4.2 33 49-82 10-42 (86)
47 cd06470 ACD_IbpA-B_like Alpha- 89.1 1.2 2.7E-05 27.8 4.8 36 49-85 11-46 (90)
48 PRK10743 heat shock protein Ib 88.0 2.7 5.9E-05 28.6 6.2 35 48-83 44-78 (137)
49 cd06471 ACD_LpsHSP_like Group 87.0 1.8 3.9E-05 26.9 4.6 34 49-83 10-43 (93)
50 cd06479 ACD_HspB7_like Alpha c 86.8 2 4.3E-05 26.6 4.6 33 50-83 9-41 (81)
51 cd06526 metazoan_ACD Alpha-cry 86.8 1.7 3.6E-05 26.6 4.3 34 50-84 8-41 (83)
52 cd06498 ACD_alphaB-crystallin_ 86.7 1.6 3.5E-05 27.1 4.2 33 49-82 7-39 (84)
53 cd06475 ACD_HspB1_like Alpha c 85.8 2 4.4E-05 26.8 4.3 34 49-83 10-43 (86)
54 PF00011 HSP20: Hsp20/alpha cr 85.6 2.7 5.8E-05 26.4 4.9 33 49-82 7-39 (102)
55 cd06472 ACD_ScHsp26_like Alpha 85.0 7.1 0.00015 24.2 6.6 34 49-83 9-43 (92)
56 cd06481 ACD_HspB9_like Alpha c 84.8 2.3 4.9E-05 26.6 4.2 33 50-83 8-40 (87)
57 PRK11597 heat shock chaperone 84.4 4.7 0.0001 27.7 5.9 34 49-83 43-76 (142)
58 PF14913 DPCD: DPCD protein fa 83.0 15 0.00032 26.8 8.1 80 1-83 83-170 (194)
59 KOG1667 Zn2+-binding protein M 82.9 4.9 0.00011 30.7 5.8 81 4-86 214-297 (320)
60 cd06464 ACD_sHsps-like Alpha-c 79.9 5.7 0.00012 23.7 4.6 36 49-85 7-42 (88)
61 COG0071 IbpA Molecular chapero 75.1 7.8 0.00017 26.3 4.6 34 49-83 50-83 (146)
62 PF01954 DUF104: Protein of un 74.6 3.2 7E-05 24.4 2.2 33 64-98 3-35 (60)
63 cd06467 p23_NUDC_like p23_like 71.8 10 0.00022 22.8 4.1 31 50-80 9-39 (85)
64 PF14730 DUF4468: Domain of un 68.9 12 0.00027 23.3 4.2 17 65-81 69-85 (91)
65 cd06494 p23_NUDCD2_like p23-li 68.7 12 0.00026 23.8 4.1 30 50-79 16-45 (93)
66 KOG3413 Mitochondrial matrix p 65.2 3.2 6.9E-05 29.0 0.9 25 57-81 65-89 (156)
67 KOG3247 Uncharacterized conser 59.0 8.5 0.00018 31.3 2.4 79 2-85 1-82 (466)
68 cd06493 p23_NUDCD1_like p23_NU 57.5 27 0.00059 21.2 4.1 29 51-79 10-38 (85)
69 cd00503 Frataxin Frataxin is a 55.2 14 0.0003 24.1 2.6 17 64-80 28-44 (105)
70 PF01491 Frataxin_Cyay: Fratax 54.3 17 0.00037 23.7 2.9 18 64-81 30-47 (109)
71 PRK00446 cyaY frataxin-like pr 53.5 14 0.0003 24.1 2.4 17 66-82 29-45 (105)
72 KOG2265 Nuclear distribution p 52.9 77 0.0017 22.8 6.2 78 4-84 18-97 (179)
73 TIGR03421 FeS_CyaY iron donor 52.4 14 0.0003 24.0 2.2 17 65-81 26-42 (102)
74 cd06492 p23_mNUDC_like p23-lik 49.5 40 0.00086 20.9 4.0 30 51-80 10-41 (87)
75 cd06480 ACD_HspB8_like Alpha-c 47.5 54 0.0012 20.7 4.4 35 49-84 15-49 (91)
76 TIGR03422 mito_frataxin fratax 44.2 18 0.00039 23.2 1.8 15 67-81 30-44 (97)
77 cd07887 RHD-n_Dorsal_Dif N-ter 40.7 1.2E+02 0.0026 21.7 5.7 66 3-78 39-105 (173)
78 PF14814 UB2H: Bifunctional tr 40.3 49 0.0011 20.4 3.3 42 37-78 29-72 (85)
79 PF14014 DUF4230: Protein of u 39.8 20 0.00044 24.2 1.6 32 54-85 45-81 (157)
80 cd07934 RHD-n_NFkB2 N-terminal 38.8 1.3E+02 0.0029 21.7 5.7 67 4-80 40-107 (185)
81 KOG3158 HSP90 co-chaperone p23 37.7 1E+02 0.0022 22.2 4.8 76 2-82 5-83 (180)
82 PF06977 SdiA-regulated: SdiA- 36.8 1.3E+02 0.0028 22.4 5.7 53 23-78 16-81 (248)
83 TIGR02934 nifT_nitrog probable 33.5 52 0.0011 19.9 2.5 25 71-99 9-33 (67)
84 cd07935 RHD-n_NFkB1 N-terminal 32.5 2E+02 0.0044 21.1 6.3 20 61-80 86-106 (202)
85 cd07883 RHD-n_NFkB N-terminal 32.4 2E+02 0.0043 21.1 5.7 20 61-80 86-106 (197)
86 PF06045 Rhamnogal_lyase: Rham 32.1 49 0.0011 24.2 2.7 22 63-84 13-34 (203)
87 KOG0100 Molecular chaperones G 30.3 2.4E+02 0.0053 23.5 6.5 59 46-107 484-545 (663)
88 PLN02711 Probable galactinol-- 29.5 95 0.0021 27.3 4.3 48 45-95 725-775 (777)
89 COG2880 Uncharacterized protei 29.0 4.7 0.0001 24.4 -2.6 12 65-76 6-17 (67)
90 PRK01379 cyaY frataxin-like pr 28.1 57 0.0012 21.2 2.2 16 65-80 29-44 (103)
91 COG1965 CyaY Protein implicate 26.4 69 0.0015 21.1 2.4 17 66-82 30-46 (106)
92 PF14864 Alkyl_sulf_C: Alkyl s 25.4 1.5E+02 0.0032 19.3 3.9 42 51-97 34-75 (125)
93 cd06407 PB1_NLP A PB1 domain i 24.3 72 0.0016 19.7 2.1 18 65-82 2-19 (82)
94 PF05258 DUF721: Protein of un 24.1 90 0.0019 18.4 2.5 14 68-81 44-57 (89)
95 PF02200 STE: STE like transcr 23.6 1.7E+02 0.0036 19.1 3.7 27 51-80 3-29 (110)
96 PF09732 CactinC_cactus: Cactu 23.1 1E+02 0.0022 20.9 2.7 16 65-80 102-117 (125)
97 PF06988 NifT: NifT/FixU prote 23.0 76 0.0016 19.0 1.9 22 71-96 9-30 (64)
98 KOG0101 Molecular chaperones H 22.9 2.2E+02 0.0047 24.5 5.2 57 47-106 459-518 (620)
99 PF13600 DUF4140: N-terminal d 22.8 1.1E+02 0.0025 19.1 2.9 33 49-81 22-57 (104)
100 PF10830 DUF2553: Protein of u 20.7 1.2E+02 0.0027 18.7 2.5 21 63-83 7-27 (76)
101 PF04972 BON: BON domain; Int 20.4 1.7E+02 0.0038 16.2 3.2 21 60-80 13-33 (64)
102 PF08479 POTRA_2: POTRA domain 20.4 94 0.002 18.3 2.0 11 69-79 63-73 (76)
103 PF10988 DUF2807: Protein of u 20.4 2.8E+02 0.0061 18.6 5.4 46 51-99 21-66 (181)
104 KOG2370 Cactin [Signal transdu 20.2 69 0.0015 26.8 1.7 17 65-81 600-616 (623)
105 cd05794 S1_EF-P_repeat_2 S1_EF 20.1 1.8E+02 0.0039 16.8 3.0 28 67-99 23-50 (56)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.93 E-value=3.3e-25 Score=152.72 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=78.9
Q ss_pred ccceeeEEE-cCCcEEEEEEccCCCCccCCc---------------ccccccccEEEEeeecceEEEEEECCCCCccCce
Q 043603 3 LFALGDWEL-ENSPNICSFIRIATGMKSDDC---------------NKEVEREKRHRAERTMCKFWRQFRMPMSADLEHV 66 (114)
Q Consensus 3 ~~p~~dv~e-~~~~~~i~~~~~lPGv~~edi---------------~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i 66 (114)
..|++||++ ++++|+|.+ +||||+++|| ....++..|+++||++|+|+|+|.||++||.+
T Consensus 31 ~~P~vdI~e~~~~~y~v~a--dlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~-- 106 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITL--ALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS-- 106 (142)
T ss_pred CCCcEEEEEcCCCEEEEEE--EeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--
Confidence 469999998 477999999 9999999999 12234678999999999999999999999998
Q ss_pred EEEEeCCEEEEEEeCcCCCCCCCCeEEEEecCC
Q 043603 67 KAHMENGVLRITVPNLAGEQKRQPKVINIDEES 99 (114)
Q Consensus 67 ~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~~~~ 99 (114)
+|+|+||||+|+|||..++. .++|+|+|+...
T Consensus 107 ~A~~~nGVL~I~lPK~~~~~-~~~rkI~I~~~~ 138 (142)
T PRK11597 107 GATFVNGLLHIDLIRNEPEA-IAPQRIAISERP 138 (142)
T ss_pred cCEEcCCEEEEEEeccCccc-cCCcEEEECCcc
Confidence 69999999999999975432 258999998764
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.2e-25 Score=151.40 Aligned_cols=91 Identities=32% Similarity=0.437 Sum_probs=80.9
Q ss_pred ccceeeEEEcCCcEEEEEEccCCCCccCCc-----------------ccccccccEEEEeeecceEEEEEECCCCCccCc
Q 043603 3 LFALGDWELENSPNICSFIRIATGMKSDDC-----------------NKEVEREKRHRAERTMCKFWRQFRMPMSADLEH 65 (114)
Q Consensus 3 ~~p~~dv~e~~~~~~i~~~~~lPGv~~edi-----------------~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 65 (114)
..|++||++++++|+|.+ +||||+++|| +...+...++++|+.+|.|+|+|.||..|+++.
T Consensus 39 ~~P~vdi~e~~~~~~I~~--elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 39 GTPPVDIEETDDEYRITA--ELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCcEEEEEcCCEEEEEE--EcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 579999999999999999 9999999999 122356788999999999999999999999999
Q ss_pred eEEEEeCCEEEEEEeCcCCCCCCCCeEEEEe
Q 043603 66 VKAHMENGVLRITVPNLAGEQKRQPKVINID 96 (114)
Q Consensus 66 i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~ 96 (114)
++|+|+||||+|+|||..+++ ..+++|.|.
T Consensus 117 ~~A~~~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEecccccc-ccCceeecC
Confidence 999999999999999998874 347788774
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.92 E-value=1.4e-24 Score=148.88 Aligned_cols=88 Identities=18% Similarity=0.304 Sum_probs=75.5
Q ss_pred cceeeEEE-cCCcEEEEEEccCCCCccCCc---------------ccccccccEEEEeeecceEEEEEECCCCCccCceE
Q 043603 4 FALGDWEL-ENSPNICSFIRIATGMKSDDC---------------NKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVK 67 (114)
Q Consensus 4 ~p~~dv~e-~~~~~~i~~~~~lPGv~~edi---------------~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 67 (114)
.|++||++ ++++|+|.+ +||||+++|| ..+.++.+++++||.+|+|.|+|.||.+||.++
T Consensus 34 ~p~~di~ee~~~~~~v~a--elPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~-- 109 (137)
T PRK10743 34 YPPYNVELVDENHYRIAI--AVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG-- 109 (137)
T ss_pred CCcEEEEEcCCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--
Confidence 39999995 899999999 9999999999 122345679999999999999999999999994
Q ss_pred EEEeCCEEEEEEeCcCCCCCCCCeEEEEe
Q 043603 68 AHMENGVLRITVPNLAGEQKRQPKVINID 96 (114)
Q Consensus 68 A~~~nGvL~I~~PK~~~~~~~~~~~I~I~ 96 (114)
|+|+||||+|++||..++. .++|+|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~~-~~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEA-KKPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCccc-cCCeEEeeC
Confidence 9999999999999975432 258899884
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.90 E-value=1.1e-23 Score=135.04 Aligned_cols=74 Identities=38% Similarity=0.638 Sum_probs=66.8
Q ss_pred eeeEEEcCCcEEEEEEccCCCCccCCccc------------------ccccccEEEEeeecceEEEEEECCCCCccCceE
Q 043603 6 LGDWELENSPNICSFIRIATGMKSDDCNK------------------EVEREKRHRAERTMCKFWRQFRMPMSADLEHVK 67 (114)
Q Consensus 6 ~~dv~e~~~~~~i~~~~~lPGv~~edi~~------------------~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 67 (114)
++||+|++++|+|.+ +||||+++||.. ...+..++++|+.+|.|.|+|.||.++|.++|+
T Consensus 1 ~~dv~E~~~~~~i~~--~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~ 78 (92)
T cd06472 1 RVDWKETPEAHVFKA--DVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVK 78 (92)
T ss_pred CccEEEcCCeEEEEE--ECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCE
Confidence 589999999999999 999999999921 123457788999999999999999999999999
Q ss_pred EEEeCCEEEEEEeC
Q 043603 68 AHMENGVLRITVPN 81 (114)
Q Consensus 68 A~~~nGvL~I~~PK 81 (114)
|+|+||+|+|++||
T Consensus 79 A~~~nGvL~I~lPK 92 (92)
T cd06472 79 AFLENGVLTVTVPK 92 (92)
T ss_pred EEEECCEEEEEecC
Confidence 99999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.89 E-value=1.6e-22 Score=131.20 Aligned_cols=87 Identities=34% Similarity=0.515 Sum_probs=70.2
Q ss_pred eEEEcCCcEEEEEEccCCCCccCCc---------------ccccccccEEEEeeecceEEEEEECCCCCccCceEEEEeC
Q 043603 8 DWELENSPNICSFIRIATGMKSDDC---------------NKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHMEN 72 (114)
Q Consensus 8 dv~e~~~~~~i~~~~~lPGv~~edi---------------~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~n 72 (114)
||++++++|.|.+ +||||.++|| .....+..++..+++++.|.|+|.||.++|.++|+|+|+|
T Consensus 1 di~e~~~~~~i~~--~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~ 78 (102)
T PF00011_consen 1 DIKEDEDEYIIKV--DLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYEN 78 (102)
T ss_dssp EEEESSSEEEEEE--E-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETT
T ss_pred CeEECCCEEEEEE--ECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecC
Confidence 8999999999999 9999999999 1124566788889999999999999999999999999999
Q ss_pred CEEEEEEeCcCCCCCCCCeEEEEe
Q 043603 73 GVLRITVPNLAGEQKRQPKVINID 96 (114)
Q Consensus 73 GvL~I~~PK~~~~~~~~~~~I~I~ 96 (114)
|+|+|++||....+...+++|+|+
T Consensus 79 GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 79 GVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp SEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CEEEEEEEccccccCCCCeEEEeC
Confidence 999999999988765568999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.88 E-value=1.5e-22 Score=129.78 Aligned_cols=74 Identities=32% Similarity=0.469 Sum_probs=66.0
Q ss_pred ceeeEEEcCCcEEEEEEccCCCCccCCcc-------------c------ccccccEEEEeeecceEEEEEECCCCCccCc
Q 043603 5 ALGDWELENSPNICSFIRIATGMKSDDCN-------------K------EVEREKRHRAERTMCKFWRQFRMPMSADLEH 65 (114)
Q Consensus 5 p~~dv~e~~~~~~i~~~~~lPGv~~edi~-------------~------~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 65 (114)
|++||+++++.|+|.+ +||||+++||. . ......+++.|+.+|.|.|.|.|| +++.++
T Consensus 1 ~~~di~e~~~~~~i~~--~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~ 77 (93)
T cd06471 1 MKTDIKETDDEYIVEA--DLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEE 77 (93)
T ss_pred CceeEEEcCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHH
Confidence 5799999999999999 99999999991 0 112346899999999999999999 799999
Q ss_pred eEEEEeCCEEEEEEeC
Q 043603 66 VKAHMENGVLRITVPN 81 (114)
Q Consensus 66 i~A~~~nGvL~I~~PK 81 (114)
|+|+|+||+|+|++||
T Consensus 78 i~A~~~dGvL~I~lPK 93 (93)
T cd06471 78 IKAKYENGVLKITLPK 93 (93)
T ss_pred CEEEEECCEEEEEEcC
Confidence 9999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.85 E-value=3.8e-21 Score=123.07 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=64.6
Q ss_pred ceeeEEEcC-CcEEEEEEccCCCCccCCcc----------------cccccccEEEEeeecceEEEEEECCCCCccCceE
Q 043603 5 ALGDWELEN-SPNICSFIRIATGMKSDDCN----------------KEVEREKRHRAERTMCKFWRQFRMPMSADLEHVK 67 (114)
Q Consensus 5 p~~dv~e~~-~~~~i~~~~~lPGv~~edi~----------------~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~ 67 (114)
|++||++++ +.|+|.+ +|||++++||. ....+.+|+++|+.+|.|.|+|.||.++|.. +
T Consensus 1 p~~di~e~~~~~~~v~~--~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITL--AVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 789999975 9999999 99999999991 1124568889999999999999999999875 8
Q ss_pred EEEeCCEEEEEEeC
Q 043603 68 AHMENGVLRITVPN 81 (114)
Q Consensus 68 A~~~nGvL~I~~PK 81 (114)
|+|+||+|+|+||+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.81 E-value=9.1e-20 Score=116.01 Aligned_cols=67 Identities=15% Similarity=0.319 Sum_probs=56.8
Q ss_pred eEEEcCCcEEEEEEccCCCCccCCccccc---------------ccccEEEEeeecceEEEEEECCCCCccCceEEEE-e
Q 043603 8 DWELENSPNICSFIRIATGMKSDDCNKEV---------------EREKRHRAERTMCKFWRQFRMPMSADLEHVKAHM-E 71 (114)
Q Consensus 8 dv~e~~~~~~i~~~~~lPGv~~edi~~~~---------------~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~-~ 71 (114)
+|+++++.|.|.+ +||||+++||.... ++..++++ .|.|+|.||++||.++|+|+| +
T Consensus 4 ~v~e~~~~~~v~~--dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~-----ef~R~~~LP~~Vd~~~i~A~~~~ 76 (86)
T cd06497 4 EVRSDRDKFTIYL--DVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISR-----EFHRRYRLPSNVDQSAITCSLSA 76 (86)
T ss_pred eEEEcCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEE-----EEEEEEECCCCCChHHeEEEeCC
Confidence 7999999999999 99999999993221 12233333 499999999999999999999 8
Q ss_pred CCEEEEEEeC
Q 043603 72 NGVLRITVPN 81 (114)
Q Consensus 72 nGvL~I~~PK 81 (114)
||||+|++||
T Consensus 77 dGvL~I~~PK 86 (86)
T cd06497 77 DGMLTFSGPK 86 (86)
T ss_pred CCEEEEEecC
Confidence 9999999998
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.79 E-value=2.4e-19 Score=112.96 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=60.2
Q ss_pred eEEEcCCcEEEEEEccCCCCccCCcccccccccE-EEEee------ecceEEEEEECCCCCccCceEEEE-eCCEEEEEE
Q 043603 8 DWELENSPNICSFIRIATGMKSDDCNKEVEREKR-HRAER------TMCKFWRQFRMPMSADLEHVKAHM-ENGVLRITV 79 (114)
Q Consensus 8 dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~-~~~er------~~g~f~r~~~LP~~vd~~~i~A~~-~nGvL~I~~ 79 (114)
||+++++.|.|.+ +||||+++||.....+..+ ++.++ .+|+|+|+|.||.+||+++|+|+| +||+|+|++
T Consensus 2 ~v~e~~~~~~v~~--dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~ 79 (81)
T cd06479 2 NVKTLGDTYQFAV--DVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKA 79 (81)
T ss_pred CccCcCCeEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEe
Confidence 7899999999999 9999999999544333322 22222 568999999999999999999997 999999999
Q ss_pred eC
Q 043603 80 PN 81 (114)
Q Consensus 80 PK 81 (114)
++
T Consensus 80 ~~ 81 (81)
T cd06479 80 RR 81 (81)
T ss_pred cC
Confidence 86
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.79 E-value=4.9e-19 Score=111.92 Aligned_cols=67 Identities=18% Similarity=0.338 Sum_probs=55.4
Q ss_pred eEEEcCCcEEEEEEccCCCCccCCcccccc---------------cccEEEEeeecceEEEEEECCCCCccCceEEEE-e
Q 043603 8 DWELENSPNICSFIRIATGMKSDDCNKEVE---------------REKRHRAERTMCKFWRQFRMPMSADLEHVKAHM-E 71 (114)
Q Consensus 8 dv~e~~~~~~i~~~~~lPGv~~edi~~~~~---------------~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~-~ 71 (114)
+|.+++++|.|.+ +||||+++||..... +..++++ .|.|+|.||.+||.++|+|+| +
T Consensus 1 ~~~~~~~~~~v~~--dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~~ 73 (83)
T cd06478 1 EVRLDKDRFSVNL--DVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISR-----EFHRRYRLPPGVDPAAITSSLSA 73 (83)
T ss_pred CeeecCceEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEE-----EEEEEEECCCCcChHHeEEEECC
Confidence 3678999999999 999999999932221 2223332 499999999999999999999 6
Q ss_pred CCEEEEEEeC
Q 043603 72 NGVLRITVPN 81 (114)
Q Consensus 72 nGvL~I~~PK 81 (114)
||+|+|++||
T Consensus 74 dGvL~I~~PK 83 (83)
T cd06478 74 DGVLTISGPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999998
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.78 E-value=7e-19 Score=111.51 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=55.4
Q ss_pred EEEcCCcEEEEEEccCCCCccCCccccc---------------ccccEEEEeeecceEEEEEECCCCCccCceEEEEe-C
Q 043603 9 WELENSPNICSFIRIATGMKSDDCNKEV---------------EREKRHRAERTMCKFWRQFRMPMSADLEHVKAHME-N 72 (114)
Q Consensus 9 v~e~~~~~~i~~~~~lPGv~~edi~~~~---------------~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~-n 72 (114)
+.+++++|.|.+ +||||+++||.... ++..+++ +.|.|+|.||.+||.++|+|+|+ |
T Consensus 2 ~~~~~~~~~v~~--dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~-----~eF~R~~~LP~~vd~~~i~A~~~~d 74 (84)
T cd06498 2 MRLEKDKFSVNL--DVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFIS-----REFQRKYRIPADVDPLTITSSLSPD 74 (84)
T ss_pred eEeCCceEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEE-----EEEEEEEECCCCCChHHcEEEeCCC
Confidence 578899999999 99999999993221 1222332 35999999999999999999995 9
Q ss_pred CEEEEEEeCc
Q 043603 73 GVLRITVPNL 82 (114)
Q Consensus 73 GvL~I~~PK~ 82 (114)
|+|+|++||+
T Consensus 75 GvL~I~lPk~ 84 (84)
T cd06498 75 GVLTVCGPRK 84 (84)
T ss_pred CEEEEEEeCC
Confidence 9999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.76 E-value=3.2e-18 Score=108.87 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=57.1
Q ss_pred eeEEEcCCcEEEEEEccCCCCccCCcccccccccE-EEE---------eeecceEEEEEECCCCCccCceEEEEe-CCEE
Q 043603 7 GDWELENSPNICSFIRIATGMKSDDCNKEVEREKR-HRA---------ERTMCKFWRQFRMPMSADLEHVKAHME-NGVL 75 (114)
Q Consensus 7 ~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~-~~~---------er~~g~f~r~~~LP~~vd~~~i~A~~~-nGvL 75 (114)
.||+++++.|.|.+ +||||+++||.....+..+ +.. ....++|+|+|.||.+||.++|+|+|. ||+|
T Consensus 3 ~~i~e~~~~~~v~~--dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL 80 (86)
T cd06475 3 SEIRQTADRWKVSL--DVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGIL 80 (86)
T ss_pred ceEEEcCCeEEEEE--ECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeE
Confidence 58999999999999 9999999999322211111 111 112358999999999999999999997 9999
Q ss_pred EEEEe
Q 043603 76 RITVP 80 (114)
Q Consensus 76 ~I~~P 80 (114)
+|++|
T Consensus 81 ~I~lP 85 (86)
T cd06475 81 TVEAP 85 (86)
T ss_pred EEEec
Confidence 99998
No 13
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.75 E-value=7e-18 Score=105.59 Aligned_cols=72 Identities=38% Similarity=0.551 Sum_probs=61.9
Q ss_pred eEEEcCCcEEEEEEccCCCCccCCcccccc----------------cccEEEEeeecceEEEEEECCCCCccCceEEEEe
Q 043603 8 DWELENSPNICSFIRIATGMKSDDCNKEVE----------------REKRHRAERTMCKFWRQFRMPMSADLEHVKAHME 71 (114)
Q Consensus 8 dv~e~~~~~~i~~~~~lPGv~~edi~~~~~----------------~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~ 71 (114)
|+++++++|++.+ +||||++++|..... ...+...++.++.|.|+|.||.++|.+.++|.|.
T Consensus 1 ~i~e~~~~~~i~~--~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEA--DLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 5789999999999 999999999922111 1135567788999999999999999999999999
Q ss_pred CCEEEEEEeC
Q 043603 72 NGVLRITVPN 81 (114)
Q Consensus 72 nGvL~I~~PK 81 (114)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.74 E-value=9e-18 Score=106.23 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=55.2
Q ss_pred EEEcCCcEEEEEEccCCCCccCCcccccccccEE----------EEeeecceEEEEEECCCCCccCceEEEEe-CCEEEE
Q 043603 9 WELENSPNICSFIRIATGMKSDDCNKEVEREKRH----------RAERTMCKFWRQFRMPMSADLEHVKAHME-NGVLRI 77 (114)
Q Consensus 9 v~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~----------~~er~~g~f~r~~~LP~~vd~~~i~A~~~-nGvL~I 77 (114)
+..++++|.|.+ +||||+++||.....+..+. ..++.++.|.|+|.||.+||+++|+|+|. ||+|+|
T Consensus 2 ~~~~~d~y~v~~--dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I 79 (83)
T cd06476 2 VESEDDKYQVFL--DVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCI 79 (83)
T ss_pred eeccCCeEEEEE--EcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEE
Confidence 456789999999 99999999993222111111 11233456999999999999999999996 999999
Q ss_pred EEeC
Q 043603 78 TVPN 81 (114)
Q Consensus 78 ~~PK 81 (114)
++||
T Consensus 80 ~~Pr 83 (83)
T cd06476 80 QAPR 83 (83)
T ss_pred EecC
Confidence 9997
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.72 E-value=1.6e-17 Score=105.88 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=54.4
Q ss_pred EcCCcEEEEEEccCCCCccCCcccccc-----------------cccEEEEeeecceEEEEEECCCCCccCceEEEE-eC
Q 043603 11 LENSPNICSFIRIATGMKSDDCNKEVE-----------------REKRHRAERTMCKFWRQFRMPMSADLEHVKAHM-EN 72 (114)
Q Consensus 11 e~~~~~~i~~~~~lPGv~~edi~~~~~-----------------~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~-~n 72 (114)
+..+.|.|.+ +||||+++||..... ...+. +.+|.|.|+|.||.+||.++|+|+| +|
T Consensus 4 ~~~d~~~v~~--dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~d 78 (87)
T cd06481 4 DGKEGFSLKL--DVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPS 78 (87)
T ss_pred CccceEEEEE--ECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCC
Confidence 5678999999 999999999922111 12222 4578999999999999999999999 99
Q ss_pred CEEEEEEeC
Q 043603 73 GVLRITVPN 81 (114)
Q Consensus 73 GvL~I~~PK 81 (114)
|||+|++|+
T Consensus 79 GvL~I~~P~ 87 (87)
T cd06481 79 GHLHIRAPR 87 (87)
T ss_pred ceEEEEcCC
Confidence 999999996
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.69 E-value=4.6e-17 Score=103.82 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=54.4
Q ss_pred cCCcEEEEEEccCCCCccCCccccccc-------------ccEEEEeeecceEEEEEECCCCCccCceEEEEeCC-EEEE
Q 043603 12 ENSPNICSFIRIATGMKSDDCNKEVER-------------EKRHRAERTMCKFWRQFRMPMSADLEHVKAHMENG-VLRI 77 (114)
Q Consensus 12 ~~~~~~i~~~~~lPGv~~edi~~~~~~-------------~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~nG-vL~I 77 (114)
+++.|+|.+ +||||+++||.....+ ......||.+|+|.|+|.||.+||.++|+|+|+|| +|+|
T Consensus 6 ~~~~~~v~a--dlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASV--DVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 568999999 9999999999211111 11113478999999999999999999999999876 9999
Q ss_pred EEeC
Q 043603 78 TVPN 81 (114)
Q Consensus 78 ~~PK 81 (114)
.-|.
T Consensus 84 ~~~~ 87 (87)
T cd06482 84 ETPC 87 (87)
T ss_pred eeCC
Confidence 8873
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.69 E-value=7.7e-17 Score=101.49 Aligned_cols=68 Identities=21% Similarity=0.383 Sum_probs=54.0
Q ss_pred cCCcEEEEEEccCCCCccCCcccccccccEE-E---------EeeecceEEEEEECCCCCccCceEEEEeC-CEEEEEEe
Q 043603 12 ENSPNICSFIRIATGMKSDDCNKEVEREKRH-R---------AERTMCKFWRQFRMPMSADLEHVKAHMEN-GVLRITVP 80 (114)
Q Consensus 12 ~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~-~---------~er~~g~f~r~~~LP~~vd~~~i~A~~~n-GvL~I~~P 80 (114)
.++.|.|.+ +||||+++||.....+..+. . .++.++.|.|+|.||.+||+++++|+|.| |+|+|++|
T Consensus 5 ~~~~~~v~~--dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 5 DDEKFQVTL--DVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred cCeeEEEEE--ECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 346899999 99999999994333222221 1 12346799999999999999999999998 99999999
Q ss_pred C
Q 043603 81 N 81 (114)
Q Consensus 81 K 81 (114)
|
T Consensus 83 k 83 (83)
T cd06526 83 K 83 (83)
T ss_pred C
Confidence 7
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.66 E-value=3e-16 Score=99.30 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=52.4
Q ss_pred EEcCCcEEEEEEccCCCCccCCcccccccccE-EE---------EeeecceEEEEEECCCCCccCceEEEE-eCCEEEEE
Q 043603 10 ELENSPNICSFIRIATGMKSDDCNKEVEREKR-HR---------AERTMCKFWRQFRMPMSADLEHVKAHM-ENGVLRIT 78 (114)
Q Consensus 10 ~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~-~~---------~er~~g~f~r~~~LP~~vd~~~i~A~~-~nGvL~I~ 78 (114)
-++++.|.|.+ +||||+++||.....+..+ ++ .++..++|+|+|.||.+|+.++|+|+| +||||+|+
T Consensus 3 ~e~~~~~~v~~--dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 3 EEGKPMFQILL--DVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred ccCCceEEEEE--EcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 46789999999 9999999999322111111 00 111234899999999999999999998 89999999
Q ss_pred Ee
Q 043603 79 VP 80 (114)
Q Consensus 79 ~P 80 (114)
.|
T Consensus 81 ~~ 82 (83)
T cd06477 81 TK 82 (83)
T ss_pred ec
Confidence 76
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.3e-16 Score=111.99 Aligned_cols=93 Identities=30% Similarity=0.417 Sum_probs=77.1
Q ss_pred CccceeeEEEcCCcEEEEEEccCCCCccCCcc--------------------cccccccEEEEeeecceEEEEEECCCCC
Q 043603 2 LLFALGDWELENSPNICSFIRIATGMKSDDCN--------------------KEVEREKRHRAERTMCKFWRQFRMPMSA 61 (114)
Q Consensus 2 ~~~p~~dv~e~~~~~~i~~~~~lPGv~~edi~--------------------~~~~~~~~~~~er~~g~f~r~~~LP~~v 61 (114)
...+++++.+.++.|.+.+ ++||+.++++. ....+..++..|+.+|.|.|.|.||+++
T Consensus 82 ~~~~~~~v~e~~~~~~~~~--~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv 159 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKV--DLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENV 159 (196)
T ss_pred cccCCcccccCCCceEEEe--eCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccc
Confidence 3457888999999999999 99999999991 1124456888999999999999999999
Q ss_pred ccCceEEEEeCCEEEEEEeCcCCC-CCCCCeEEEEe
Q 043603 62 DLEHVKAHMENGVLRITVPNLAGE-QKRQPKVINID 96 (114)
Q Consensus 62 d~~~i~A~~~nGvL~I~~PK~~~~-~~~~~~~I~I~ 96 (114)
+.+.|+|.|+||||+|++||..+. .....+.|.|.
T Consensus 160 ~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 160 DVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred cHHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 999999999999999999999873 12245556553
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.43 E-value=3.3e-13 Score=86.68 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=54.1
Q ss_pred EEEcCCcEEEEEEccCCCCccCCcccccccccEEE----------EeeecceEEEEEECCCCCccCceEEEEe-CCEEEE
Q 043603 9 WELENSPNICSFIRIATGMKSDDCNKEVEREKRHR----------AERTMCKFWRQFRMPMSADLEHVKAHME-NGVLRI 77 (114)
Q Consensus 9 v~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~----------~er~~g~f~r~~~LP~~vd~~~i~A~~~-nGvL~I 77 (114)
+..+++.|.|.+ ++.||+++||.....+..+.. .....+.|.|+|.||.+||.+.|+|+|. ||+|+|
T Consensus 10 ~~~~~~~f~v~l--dv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~I 87 (91)
T cd06480 10 PPNSSEPWKVCV--NVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLII 87 (91)
T ss_pred CCCCCCcEEEEE--EeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEE
Confidence 456788999999 999999999932211111110 0122368999999999999999999997 999999
Q ss_pred EEeC
Q 043603 78 TVPN 81 (114)
Q Consensus 78 ~~PK 81 (114)
.+|.
T Consensus 88 eaP~ 91 (91)
T cd06480 88 EAPQ 91 (91)
T ss_pred EcCC
Confidence 9983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.2e-12 Score=91.58 Aligned_cols=93 Identities=16% Similarity=0.268 Sum_probs=72.5
Q ss_pred ceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEEE----ee------ecceEEEEEECCCCCccCceEEEEe-CC
Q 043603 5 ALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRA----ER------TMCKFWRQFRMPMSADLEHVKAHME-NG 73 (114)
Q Consensus 5 p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~----er------~~g~f~r~~~LP~~vd~~~i~A~~~-nG 73 (114)
...++..+.+.|.|.+ |+..|.+++|.....+..+... ++ ....|.|+|.||.+||++.|++++. ||
T Consensus 63 ~~~~~~~~~~~F~V~l--DV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dG 140 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNL--DVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDG 140 (173)
T ss_pred cccccccCCCcEEEEE--EcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCc
Confidence 4567888999999999 9999999999433332211110 11 1236999999999999999999995 89
Q ss_pred EEEEEEeCcCCCCCCCCeEEEEecCCC
Q 043603 74 VLRITVPNLAGEQKRQPKVINIDEESG 100 (114)
Q Consensus 74 vL~I~~PK~~~~~~~~~~~I~I~~~~~ 100 (114)
+|+|.+||....+. ..|.|+|...+.
T Consensus 141 vLtI~ap~~~~~~~-~er~ipI~~~~~ 166 (173)
T KOG3591|consen 141 VLTIEAPKPPPKQD-NERSIPIEQVGP 166 (173)
T ss_pred eEEEEccCCCCcCc-cceEEeEeecCc
Confidence 99999999987653 589999998874
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.36 E-value=3.5e-12 Score=76.84 Aligned_cols=71 Identities=34% Similarity=0.540 Sum_probs=59.0
Q ss_pred EEEcCCcEEEEEEccCCCCccCCcccccccccEEEE-ee--------ecceEEEEEECCCCCccCceEEEEeCCEEEEEE
Q 043603 9 WELENSPNICSFIRIATGMKSDDCNKEVEREKRHRA-ER--------TMCKFWRQFRMPMSADLEHVKAHMENGVLRITV 79 (114)
Q Consensus 9 v~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~-er--------~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~ 79 (114)
|+++++.|.|.+ ++||+.++++.....+..+... .+ ..+.|.+.+.||..++++.++|.|.+|+|+|++
T Consensus 1 ~~q~~~~v~i~i--~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l 78 (80)
T cd00298 1 WYQTDDEVVVTV--DLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITL 78 (80)
T ss_pred CEEcCCEEEEEE--ECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEE
Confidence 678899999999 9999999999654444333322 22 357899999999999999999999999999999
Q ss_pred eC
Q 043603 80 PN 81 (114)
Q Consensus 80 PK 81 (114)
||
T Consensus 79 ~K 80 (80)
T cd00298 79 PK 80 (80)
T ss_pred cC
Confidence 97
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.27 E-value=2.7e-11 Score=74.65 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=59.6
Q ss_pred EEEcCCcEEEEEEccCCCCccCCcccccccccEEEEeeecceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcCC
Q 043603 9 WELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLAG 84 (114)
Q Consensus 9 v~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 84 (114)
|+++++.+.|.+ ++||+.++++........+... ...|.+.+.||..|+++..+|++.+|.|.|+|+|...
T Consensus 1 W~Qt~~~v~i~i--~~p~v~~~~v~v~~~~~~l~i~---~~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 1 WSQTDEDVKISV--PLKGVKTSKVDIFCSDLYLKVN---FPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP 71 (78)
T ss_pred CcccCCEEEEEE--EeCCCccccceEEEecCEEEEc---CCCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence 578999999999 9999999999655444433322 2579999999999999999999999999999999764
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.05 E-value=2e-09 Score=76.43 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=59.2
Q ss_pred cceeeEEEcCC-cEEEEEEccCCCCccCC-cccccc-cccEEEEeeecceEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043603 4 FALGDWELENS-PNICSFIRIATGMKSDD-CNKEVE-REKRHRAERTMCKFWRQFRMPMSADLEHVKAHMENGVLRITVP 80 (114)
Q Consensus 4 ~p~~dv~e~~~-~~~i~~~~~lPGv~~ed-i~~~~~-~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 80 (114)
.+.+++.+.++ .++|.+ +||||++++ |....+ +..-+.. +.-+.|.+++.||.. +.+.++|+|.||||+|++-
T Consensus 91 ~~~vdtre~dDge~~VvA--dLPGVs~dd~idV~l~~d~~~L~i-~~~~~~~krv~L~~~-~~e~~~~t~nNgILEIri~ 166 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVA--DLPGVSDDDAIDVTLDDDEGALTI-RVGEKYLKRVALPWP-DPEITSATFNNGILEIRIR 166 (177)
T ss_pred eeeeeeEecCCCcEEEEE--eCCCCCcccceeeEeecCCceEEE-ecCCceEeeEecCCC-ccceeeEEEeCceEEEEEe
Confidence 57889999777 699999 999999888 743332 1222222 233458899999966 6899999999999999999
Q ss_pred CcCCC
Q 043603 81 NLAGE 85 (114)
Q Consensus 81 K~~~~ 85 (114)
+....
T Consensus 167 ~~~~~ 171 (177)
T PF05455_consen 167 RTEES 171 (177)
T ss_pred ecCCC
Confidence 97765
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.91 E-value=9.4e-09 Score=63.02 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=60.5
Q ss_pred EEEcCCcEEEEEEccCCCCccCCcccccccccEEEEeee--cceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcCC
Q 043603 9 WELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAERT--MCKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLAG 84 (114)
Q Consensus 9 v~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er~--~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 84 (114)
|+++++.+.|.+ .+||+.++++.....+..+...-.. .+.|...+.|+..|+++...+++.+|.|.|+|+|..+
T Consensus 1 W~Q~~~~v~i~v--~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 1 WYQTLDEVTITI--PLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CcccccEEEEEE--EcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 578899999999 9999999998655544333332222 3679999999999999999999999999999999875
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.74 E-value=4.7e-08 Score=60.71 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=61.8
Q ss_pred eEEEcCCcEEEEEEccCCCCccCCcccccccccEEEEeee--cceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcCC
Q 043603 8 DWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAERT--MCKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLAG 84 (114)
Q Consensus 8 dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er~--~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 84 (114)
||+++++.+.|.+ .+||+.++++........+...-.. .+.|...+.|+..|+++..++.+.+|.|.|+|.|...
T Consensus 1 dW~Qt~~~v~i~v--~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 1 DWYQTDTSVTVTI--YAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP 77 (84)
T ss_pred CccccCCEEEEEE--EECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC
Confidence 7999999999999 9999999999655544444332222 3479999999999999999999999999999999764
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.46 E-value=4.1e-06 Score=50.73 Aligned_cols=75 Identities=8% Similarity=0.097 Sum_probs=58.0
Q ss_pred ceeeEEEcCCcEEEEEEccCCCC--ccCCcccccccccEEEEeeec--ceEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043603 5 ALGDWELENSPNICSFIRIATGM--KSDDCNKEVEREKRHRAERTM--CKFWRQFRMPMSADLEHVKAHMENGVLRITVP 80 (114)
Q Consensus 5 p~~dv~e~~~~~~i~~~~~lPGv--~~edi~~~~~~~~~~~~er~~--g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 80 (114)
|+++|+++++.+.|.+ .+++. +++|+........+...-... ..|...+.|...|+++..+.++.++.|.|+|.
T Consensus 1 ~~y~W~Qt~~~V~v~i--~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTI--PVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEE--E-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEE--EEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEE
Confidence 7899999999999999 99665 588986555444443332212 36888899999999999999999999999998
Q ss_pred C
Q 043603 81 N 81 (114)
Q Consensus 81 K 81 (114)
|
T Consensus 79 K 79 (79)
T PF04969_consen 79 K 79 (79)
T ss_dssp B
T ss_pred C
Confidence 7
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.02 E-value=6.7e-05 Score=48.99 Aligned_cols=75 Identities=9% Similarity=0.019 Sum_probs=58.1
Q ss_pred ceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEEEee---ecceEEEEEECCCCCccCceEEEEeCCEEEEEEeC
Q 043603 5 ALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAER---TMCKFWRQFRMPMSADLEHVKAHMENGVLRITVPN 81 (114)
Q Consensus 5 p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er---~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK 81 (114)
|+++|+++.+.+.|.+ .+||+ +++........+...-. ....|...+.|...|+++..+.++.++.|.|+|.|
T Consensus 1 p~~~W~Qt~~~V~i~i--~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K 76 (108)
T cd06465 1 PPVLWAQRSDVVYLTI--ELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRK 76 (108)
T ss_pred CceeeeECCCEEEEEE--EeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEE
Confidence 7899999999999999 99998 55543333333322211 12237888899999999999999999999999999
Q ss_pred cC
Q 043603 82 LA 83 (114)
Q Consensus 82 ~~ 83 (114)
..
T Consensus 77 ~~ 78 (108)
T cd06465 77 KE 78 (108)
T ss_pred CC
Confidence 87
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.96 E-value=4e-05 Score=58.43 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=50.8
Q ss_pred CCcEEEEEEccCCCC-ccCCcccccccccEEEEeeecceEEEEEECCCCCccCceEEEEe--CCEEEEEEe
Q 043603 13 NSPNICSFIRIATGM-KSDDCNKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHME--NGVLRITVP 80 (114)
Q Consensus 13 ~~~~~i~~~~~lPGv-~~edi~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~--nGvL~I~~P 80 (114)
.+.++|.+ +|||+ +..+|..+.....+...-.. ..|.-.+.||..||.+..+|.|. .++|+||||
T Consensus 260 p~~lvv~i--~LP~~~s~~~i~LdV~~~~l~l~~~~-~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEI--ELPGVESASDIDLDVSEDRLSLSSPK-PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEE--ECCCcCccceeEEEEeCCEEEEEeCC-CceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 57788888 99999 77788665554444332222 26888999999999999999995 699999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.70 E-value=0.00026 Score=44.07 Aligned_cols=75 Identities=12% Similarity=0.212 Sum_probs=58.7
Q ss_pred eEEEcCCcEEEEEEccCCCCccCCcccccccccEEEEee-ec-ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcCC
Q 043603 8 DWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAER-TM-CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLAG 84 (114)
Q Consensus 8 dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er-~~-g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 84 (114)
||+++++.+.|.+ .++|+.++++........+...-. .. ..|.-.+.|...|+++..+.+...+-+.|+|.|...
T Consensus 1 dW~Q~~~~V~iti--~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 1 DWYQTESQVVITI--LIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEA 77 (84)
T ss_pred CccccCCEEEEEE--EECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCC
Confidence 7999999999999 999999999865544444433222 12 258888899999999988888888889999999753
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.65 E-value=0.0006 Score=42.92 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=59.6
Q ss_pred eeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEE-Eeeecc-eEEEEEECCCCCccCceEEEEeCCEEEEEEeCcC
Q 043603 6 LGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHR-AERTMC-KFWRQFRMPMSADLEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 6 ~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~-~er~~g-~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 83 (114)
++||+++++.+.|.+ .+.|+.++++....+...... .....| .|.-.+.|-..|+++..+-....+-+.|+|.|..
T Consensus 2 R~dW~Qs~~~V~ItI--~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 2 RHDWHQTGSHVVVSV--YAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAE 79 (87)
T ss_pred CccEeeCCCEEEEEE--EECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCC
Confidence 589999999999999 999999999855444333211 111113 5888889999999999888888999999999986
Q ss_pred C
Q 043603 84 G 84 (114)
Q Consensus 84 ~ 84 (114)
+
T Consensus 80 ~ 80 (87)
T cd06488 80 P 80 (87)
T ss_pred C
Confidence 4
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.54 E-value=0.0006 Score=42.18 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=55.4
Q ss_pred eeEEEcCCcEEEEEEccCC-CCccCCcccccccccEEEEeeecceEEEEEECCCCCccCceEEEEeC-CEEEEEEeCcCC
Q 043603 7 GDWELENSPNICSFIRIAT-GMKSDDCNKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHMEN-GVLRITVPNLAG 84 (114)
Q Consensus 7 ~dv~e~~~~~~i~~~~~lP-Gv~~edi~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~n-GvL~I~~PK~~~ 84 (114)
++|+++++.+.|.+ .+| |++++|+........+... ...+.+.-...|...|+++...-++.+ ..|.|+|+|..+
T Consensus 1 y~W~Qt~~~V~i~i--~~~~~~~~~dv~v~~~~~~l~v~-~~~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTI--PLPEGTKSKDVKVEITPKHLKVG-VKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEE--ECCCCCcceeEEEEEEcCEEEEE-ECCCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 47999999999999 997 7899999544433333221 111233344478999999998889999 999999999865
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.46 E-value=0.0012 Score=41.22 Aligned_cols=75 Identities=9% Similarity=-0.007 Sum_probs=54.9
Q ss_pred eeEEEcCCcEEEEEEccCC-CCccCCcccccccccEEEEeeecceEEEEEECCCCCccCceEEEEeCC-EEEEEEeCcCC
Q 043603 7 GDWELENSPNICSFIRIAT-GMKSDDCNKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHMENG-VLRITVPNLAG 84 (114)
Q Consensus 7 ~dv~e~~~~~~i~~~~~lP-Gv~~edi~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~nG-vL~I~~PK~~~ 84 (114)
++|+++.+.+.|.+ .+| |+.++|+........+... ...+.....-.|...|+++.-.-.+++| .|.|+|.|..+
T Consensus 1 Y~W~Qt~~~V~v~i--~~p~~~~~~dv~v~~~~~~l~v~-~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTI--RLPEDTTKEDIRIKFLPDHISIA-LKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEE--ECCCCCChhhEEEEEecCEEEEE-eCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 57999999999999 996 9999999554443333222 1112222344799999999988888777 79999999864
No 34
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.38 E-value=0.0027 Score=39.89 Aligned_cols=77 Identities=9% Similarity=0.099 Sum_probs=58.3
Q ss_pred eeeEEEcCCcEEEEEEccCCCCcc---CCcccccccccEEEEeeec--ceEEEEEE-CCCCCccCceEEEEeCCEEEEEE
Q 043603 6 LGDWELENSPNICSFIRIATGMKS---DDCNKEVEREKRHRAERTM--CKFWRQFR-MPMSADLEHVKAHMENGVLRITV 79 (114)
Q Consensus 6 ~~dv~e~~~~~~i~~~~~lPGv~~---edi~~~~~~~~~~~~er~~--g~f~r~~~-LP~~vd~~~i~A~~~nGvL~I~~ 79 (114)
.++|+++++.+.|.+ .+|+... +++........+...-... ..|.-.+. |-..|+++..+.....+-+.|+|
T Consensus 3 ~y~W~Qt~~~V~i~i--~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 3 KYAWDQSDKFVKIYI--TLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred eeeeecCCCEEEEEE--EccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 689999999999999 9999976 8885544444343322221 13555664 88999999999999999999999
Q ss_pred eCcCC
Q 043603 80 PNLAG 84 (114)
Q Consensus 80 PK~~~ 84 (114)
.|..+
T Consensus 81 ~K~~~ 85 (92)
T cd06468 81 AKKKE 85 (92)
T ss_pred EeCCC
Confidence 99864
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.87 E-value=0.0081 Score=38.54 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=56.0
Q ss_pred ccceeeEEEcCCcEEEEEEccCC-CCccCCcccccccccEEEEeeecceEEEEE--ECCCCCccCceEEEEeCC-EEEEE
Q 043603 3 LFALGDWELENSPNICSFIRIAT-GMKSDDCNKEVEREKRHRAERTMCKFWRQF--RMPMSADLEHVKAHMENG-VLRIT 78 (114)
Q Consensus 3 ~~p~~dv~e~~~~~~i~~~~~lP-Gv~~edi~~~~~~~~~~~~er~~g~f~r~~--~LP~~vd~~~i~A~~~nG-vL~I~ 78 (114)
.++.++|+++.+.+.|.+ .|| |+++.|+........+...- .|.- -+ .|...|+++.-.-++++| +|.|+
T Consensus 4 ~~~~y~W~QT~~eV~v~i--~lp~~~~~kdv~V~i~~~~l~V~~--~g~~--~l~G~L~~~I~~destWtled~k~l~I~ 77 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEV--NVPPGTRAKDVKCKLGSRDISLAV--KGQE--VLKGKLFDSVVADECTWTLEDRKLIRIV 77 (93)
T ss_pred cCCCcEEEeEcCEEEEEE--ECCCCCceeeEEEEEEcCEEEEEE--CCEE--EEcCcccCccCcccCEEEEECCcEEEEE
Confidence 367899999999999999 888 89999995443333222211 1111 12 688999999999999877 58999
Q ss_pred EeCcCCC
Q 043603 79 VPNLAGE 85 (114)
Q Consensus 79 ~PK~~~~ 85 (114)
|.|....
T Consensus 78 L~K~~~~ 84 (93)
T cd06494 78 LTKSNRD 84 (93)
T ss_pred EEeCCCC
Confidence 9997643
No 36
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.52 E-value=0.013 Score=45.65 Aligned_cols=78 Identities=10% Similarity=0.056 Sum_probs=60.2
Q ss_pred ceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEE-Eeeecc-eEEEEEECCCCCccCceEEEEeCCEEEEEEeCc
Q 043603 5 ALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHR-AERTMC-KFWRQFRMPMSADLEHVKAHMENGVLRITVPNL 82 (114)
Q Consensus 5 p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~-~er~~g-~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 82 (114)
++.||+++++.+.|.+ -+.|+.++++........+.. .....| .|...+.|-..|+++..+.+...--+.|+|.|.
T Consensus 157 ~r~dWyQs~~~V~i~i--~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~ 234 (356)
T PLN03088 157 YRHEFYQKPEEVVVTV--FAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA 234 (356)
T ss_pred cccceeecCCEEEEEE--EecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecC
Confidence 6899999999999999 999999999965544433322 111222 477778999999999988888777999999997
Q ss_pred CC
Q 043603 83 AG 84 (114)
Q Consensus 83 ~~ 84 (114)
..
T Consensus 235 ~~ 236 (356)
T PLN03088 235 EP 236 (356)
T ss_pred CC
Confidence 64
No 37
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.26 E-value=0.071 Score=33.48 Aligned_cols=75 Identities=7% Similarity=0.051 Sum_probs=49.7
Q ss_pred eeEEEcCCcEEEEEEccCCC--CccCCcccccccccE-EEEeeecceEEEEEECCCCCccCceEEEEe--CCEEEEEEeC
Q 043603 7 GDWELENSPNICSFIRIATG--MKSDDCNKEVEREKR-HRAERTMCKFWRQFRMPMSADLEHVKAHME--NGVLRITVPN 81 (114)
Q Consensus 7 ~dv~e~~~~~~i~~~~~lPG--v~~edi~~~~~~~~~-~~~er~~g~f~r~~~LP~~vd~~~i~A~~~--nGvL~I~~PK 81 (114)
.|||++++.+.|.+ -..+ ....++......... ++.-.....|...+.|-..++++. +.++. -|-++|+|.|
T Consensus 1 ~DWyQt~~~Vtiti--y~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K 77 (87)
T cd06490 1 YDWFQTDSEVTIVV--YTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKK 77 (87)
T ss_pred CCceECCCEEEEEE--EEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEc
Confidence 49999999999999 8775 444444332222222 111111234788889989998775 55554 7899999999
Q ss_pred cCC
Q 043603 82 LAG 84 (114)
Q Consensus 82 ~~~ 84 (114)
.++
T Consensus 78 ~e~ 80 (87)
T cd06490 78 KEP 80 (87)
T ss_pred CCC
Confidence 765
No 38
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=95.94 E-value=0.1 Score=34.12 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=53.8
Q ss_pred ceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEEEeee-cc-eEEEEEECCCCCccCceEEEEeCCEEEEEEeCc
Q 043603 5 ALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAERT-MC-KFWRQFRMPMSADLEHVKAHMENGVLRITVPNL 82 (114)
Q Consensus 5 p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er~-~g-~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 82 (114)
|.++|++..+.+.|++ .+|++ .|+....+...+...... .| .|.-.+.|=..|+++.-+-+...--+.|.|.|.
T Consensus 2 p~v~WaQr~~~V~ltI--~v~d~--~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~ 77 (106)
T cd00237 2 AKTLWYDRRDYVFIEF--CVEDS--KDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKG 77 (106)
T ss_pred CcceeeECCCEEEEEE--EeCCC--CCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeC
Confidence 8899999999999999 99995 455333333333332211 22 366778898999999877666666788899997
Q ss_pred CC
Q 043603 83 AG 84 (114)
Q Consensus 83 ~~ 84 (114)
..
T Consensus 78 ~~ 79 (106)
T cd00237 78 KE 79 (106)
T ss_pred CC
Confidence 64
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=95.72 E-value=0.021 Score=41.01 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=58.6
Q ss_pred cceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEE--EEeeecceEEEEEECCCCCccCceEEEEeCCEEEEEEeC
Q 043603 4 FALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRH--RAERTMCKFWRQFRMPMSADLEHVKAHMENGVLRITVPN 81 (114)
Q Consensus 4 ~p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~--~~er~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK 81 (114)
.+++|||+++..++|.+ -.+||.++|+........+. ++-..-..|.-...|-..|.++..+-..-.--++|+|+|
T Consensus 3 k~r~DwyQt~~~vvIti--~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K 80 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITI--FAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAK 80 (196)
T ss_pred cccceeecCCceEEEEE--EecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEecc
Confidence 47899999999999999 99999999995554432222 222222246666678889999987777667889999999
Q ss_pred cCC
Q 043603 82 LAG 84 (114)
Q Consensus 82 ~~~ 84 (114)
...
T Consensus 81 ~~~ 83 (196)
T KOG1309|consen 81 AEI 83 (196)
T ss_pred ccc
Confidence 543
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=91.90 E-value=1.8 Score=27.11 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=49.6
Q ss_pred eEEEcCCcEEEEEEccCC---CCccCCcccccccccEEEEeeecceEEEEEECCCCCccCceEEEEeCC-EEEEEEeCcC
Q 043603 8 DWELENSPNICSFIRIAT---GMKSDDCNKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHMENG-VLRITVPNLA 83 (114)
Q Consensus 8 dv~e~~~~~~i~~~~~lP---Gv~~edi~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~nG-vL~I~~PK~~ 83 (114)
-|.++.+.+.|.+ .|| |+++.|+........+... ......--.=.|...|+++.-.-++++| .|.|+|-|..
T Consensus 2 ~W~QT~~ev~v~v--~l~~~~~~~~kdv~v~i~~~~l~v~-~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~ 78 (87)
T cd06492 2 RWTQTLSEVELKV--PFKVSFRLKGKDVVVDIQRKHLKVG-LKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKIN 78 (87)
T ss_pred ccEeecCEEEEEE--ECCCCCCccceEEEEEEecCEEEEE-ECCCceEEeCcccCcccccccEEEEeCCCEEEEEEEECC
Confidence 4778889999999 875 3788888443332222211 1111122233788899999988889986 8999999975
Q ss_pred C
Q 043603 84 G 84 (114)
Q Consensus 84 ~ 84 (114)
.
T Consensus 79 ~ 79 (87)
T cd06492 79 K 79 (87)
T ss_pred C
Confidence 4
No 41
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=90.49 E-value=0.74 Score=29.07 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=30.0
Q ss_pred eEEEEEECCCCCccCceEEEEeCCEEEEEEeCcCC
Q 043603 50 KFWRQFRMPMSADLEHVKAHMENGVLRITVPNLAG 84 (114)
Q Consensus 50 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 84 (114)
.|.-...|| +++.++|+.++.||.|+|+.-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 477788999 8999999999999999999988653
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=90.27 E-value=0.64 Score=29.07 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=29.6
Q ss_pred eEEEEEECCCCCccCceEEEEeCCEEEEEEeCcC
Q 043603 50 KFWRQFRMPMSADLEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 50 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 83 (114)
.|.-.+.|| +++++.|+..+++|.|+|+--+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 578888998 799999999999999999998754
No 43
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=89.74 E-value=0.75 Score=28.64 Aligned_cols=33 Identities=6% Similarity=0.095 Sum_probs=29.2
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCc
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNL 82 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 82 (114)
..|.-.+.|| ++.+++|+.++.||.|+|+--+.
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 3588889998 79999999999999999998764
No 44
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=89.51 E-value=0.95 Score=28.04 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=29.4
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCc
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNL 82 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 82 (114)
..|.-.+.|| ++++++|+.++.+|.|+|+.-+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 3688899999 89999999999999999998654
No 45
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=89.50 E-value=4.2 Score=26.39 Aligned_cols=78 Identities=8% Similarity=0.067 Sum_probs=52.6
Q ss_pred cceeeEEEcCCcEEEEEEccCC-CC-ccCCcccccccccEEEEeee-cc--eEEEEEECCCCCccCceEEEEeCC-EEEE
Q 043603 4 FALGDWELENSPNICSFIRIAT-GM-KSDDCNKEVEREKRHRAERT-MC--KFWRQFRMPMSADLEHVKAHMENG-VLRI 77 (114)
Q Consensus 4 ~p~~dv~e~~~~~~i~~~~~lP-Gv-~~edi~~~~~~~~~~~~er~-~g--~f~r~~~LP~~vd~~~i~A~~~nG-vL~I 77 (114)
+..|-|.++-+.+.|.+ .|| |. +..||........+...=+. -+ .| -.=.|...|+++.-.-++++| .|.|
T Consensus 4 ~e~Y~WtQTl~eV~V~i--~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~-i~G~L~~~V~~des~Wtled~~~l~I 80 (102)
T cd06495 4 RENYTWSQDYTDVEVRV--PVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVL-MEGEFTHKINTENSLWSLEPGKCVLL 80 (102)
T ss_pred CCceEEEeECCeEEEEE--ECCCCCccceEEEEEEEcCEEEEEEecCCCCceE-EeCcccCcccCccceEEEeCCCEEEE
Confidence 56789999999999999 999 54 57788443332222211110 00 11 111688899999988899986 5899
Q ss_pred EEeCcCC
Q 043603 78 TVPNLAG 84 (114)
Q Consensus 78 ~~PK~~~ 84 (114)
+|-|...
T Consensus 81 ~L~K~~~ 87 (102)
T cd06495 81 SLSKCSE 87 (102)
T ss_pred EEEECCC
Confidence 9999753
No 46
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=89.47 E-value=0.86 Score=28.48 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=29.3
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCc
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNL 82 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 82 (114)
..|.-.+.|| ++++++|+.+..+|.|+|+--+.
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4688899998 79999999999999999998654
No 47
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=89.09 E-value=1.2 Score=27.80 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=31.5
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcCCC
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLAGE 85 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~~ 85 (114)
..|.-.+.|| ++..++|+..++++.|+|+-.+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 5788899999 69999999999999999998876544
No 48
>PRK10743 heat shock protein IbpA; Provisional
Probab=88.03 E-value=2.7 Score=28.64 Aligned_cols=35 Identities=3% Similarity=0.048 Sum_probs=30.8
Q ss_pred cceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcC
Q 043603 48 MCKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 48 ~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 83 (114)
-..|.-...|| +++.++|..++++|+|+|+--+..
T Consensus 44 ~~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 44 ENHYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred CCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 45688899999 899999999999999999987654
No 49
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=87.04 E-value=1.8 Score=26.94 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=30.0
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcC
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 83 (114)
..|.-.+.|| +++.++|+..++++.|+|+.-+..
T Consensus 10 ~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 10 DEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 4688899999 799999999999999999887754
No 50
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=86.82 E-value=2 Score=26.65 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=29.2
Q ss_pred eEEEEEECCCCCccCceEEEEeCCEEEEEEeCcC
Q 043603 50 KFWRQFRMPMSADLEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 50 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 83 (114)
.|.-.+.|| ++++++|+.+.++|.|+|+--|..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 588889999 899999999999999999987643
No 51
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=86.82 E-value=1.7 Score=26.64 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=30.6
Q ss_pred eEEEEEECCCCCccCceEEEEeCCEEEEEEeCcCC
Q 043603 50 KFWRQFRMPMSADLEHVKAHMENGVLRITVPNLAG 84 (114)
Q Consensus 50 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 84 (114)
.|.-.+.|| ++.+++|+.+++++.|+|+.-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 688899999 6999999999999999999987654
No 52
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=86.69 E-value=1.6 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=29.0
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCc
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNL 82 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 82 (114)
..|.-.+.|| ++++++|+.++.++.|+|.--+.
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4688899998 79999999999999999998543
No 53
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=85.83 E-value=2 Score=26.77 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=29.9
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcC
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 83 (114)
..|.-.+.|| ++++++|+.++.++.|+|+--+..
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 3688899999 799999999999999999997643
No 54
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=85.62 E-value=2.7 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=28.3
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCc
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNL 82 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 82 (114)
..|.-.+.|| +++.++|+-++.++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 4688899999 89999999999999999999887
No 55
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=84.97 E-value=7.1 Score=24.23 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=28.5
Q ss_pred ceEEEEEECCCCCccCceEEEEeCC-EEEEEEeCcC
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENG-VLRITVPNLA 83 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nG-vL~I~~PK~~ 83 (114)
..|.-.+.|| ++..++|+.++.+| +|+|+--+..
T Consensus 9 ~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 9 EAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred CeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 3578889999 69999999999865 9999997654
No 56
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=84.83 E-value=2.3 Score=26.60 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=29.0
Q ss_pred eEEEEEECCCCCccCceEEEEeCCEEEEEEeCcC
Q 043603 50 KFWRQFRMPMSADLEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 50 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 83 (114)
.|.-.+.|| ++.+++|+.+++++.|+|+--+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 477888998 799999999999999999987654
No 57
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=84.40 E-value=4.7 Score=27.72 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=30.2
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcC
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 83 (114)
..|.-...|| +++.++|...+++|.|+|+--+..
T Consensus 43 ~~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 43 NHYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred CEEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 4688899999 899999999999999999997654
No 58
>PF14913 DPCD: DPCD protein family
Probab=82.96 E-value=15 Score=26.75 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=52.0
Q ss_pred CCccceeeEEEcCCcEEEEEEccCCCCccCCc--ccccccccEEEEeeecceEEEEEECCC------CCccCceEEEEeC
Q 043603 1 SLLFALGDWELENSPNICSFIRIATGMKSDDC--NKEVEREKRHRAERTMCKFWRQFRMPM------SADLEHVKAHMEN 72 (114)
Q Consensus 1 ~~~~p~~dv~e~~~~~~i~~~~~lPGv~~edi--~~~~~~~~~~~~er~~g~f~r~~~LP~------~vd~~~i~A~~~n 72 (114)
|-++|-+--.++...|...+ ..||. .++-- ..+.+.. .+..--+-..|.+.|.+|+ ..+.+.++..+.|
T Consensus 83 Ss~nP~~~r~dTk~~fqWRI-RNLPY-P~dvYsVtvd~~~r-~ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~n 159 (194)
T PF14913_consen 83 SSSNPIFVRRDTKTSFQWRI-RNLPY-PKDVYSVTVDEDER-CIVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQN 159 (194)
T ss_pred cCCCCEEEEEcCccceEEEE-ccCCC-CccceEEEEcCCCc-EEEEECcCccceeEecCCcHHhhCCCcchhhceeeeec
Confidence 34567777777888888887 56773 22221 2222222 2222234457999999997 3466778888899
Q ss_pred CEEEEEEeCcC
Q 043603 73 GVLRITVPNLA 83 (114)
Q Consensus 73 GvL~I~~PK~~ 83 (114)
..|.|+..|..
T Consensus 160 NTLIIsYkKP~ 170 (194)
T PF14913_consen 160 NTLIISYKKPK 170 (194)
T ss_pred CeEEEEecCcH
Confidence 99999998853
No 59
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=82.87 E-value=4.9 Score=30.69 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=58.2
Q ss_pred cceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEEE-e--eecceEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043603 4 FALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRA-E--RTMCKFWRQFRMPMSADLEHVKAHMENGVLRITVP 80 (114)
Q Consensus 4 ~p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~-e--r~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 80 (114)
.-+.||++++..++|.+ ..-|..++.-..+..+..++.. - ....+|...+.|=.-|+++...+.+-.--.+|+|+
T Consensus 214 ~cR~Dwhqt~~~Vti~V--Y~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~ 291 (320)
T KOG1667|consen 214 KCRHDWHQTNGFVTINV--YAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLK 291 (320)
T ss_pred cchhhhhhcCCeEEEEE--EeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEe
Confidence 34789999999999999 7777766643222222222211 1 12236888888888899999999999889999999
Q ss_pred CcCCCC
Q 043603 81 NLAGEQ 86 (114)
Q Consensus 81 K~~~~~ 86 (114)
|.++..
T Consensus 292 k~ep~s 297 (320)
T KOG1667|consen 292 KAEPGS 297 (320)
T ss_pred ccCCCC
Confidence 998753
No 60
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=79.88 E-value=5.7 Score=23.67 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=31.1
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcCCC
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLAGE 85 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~~ 85 (114)
..|.-.+.||. +++++|+.++.++.|.|+.-+....
T Consensus 7 ~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~~ 42 (88)
T cd06464 7 DAYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEEE 42 (88)
T ss_pred CEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEeccc
Confidence 36888999995 9999999999999999998887543
No 61
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=75.14 E-value=7.8 Score=26.29 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=31.1
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcC
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 83 (114)
..|.-.+.|| +++.++|.-.+.++.|+|+.-+..
T Consensus 50 ~~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 50 DEYRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred CEEEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 3788899999 799999999999999999999875
No 62
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=74.64 E-value=3.2 Score=24.45 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=15.6
Q ss_pred CceEEEEeCCEEEEEEeCcCCCCCCCCeEEEEecC
Q 043603 64 EHVKAHMENGVLRITVPNLAGEQKRQPKVINIDEE 98 (114)
Q Consensus 64 ~~i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~~~ 98 (114)
..|.|.|+||+|.--=|-.-++. ...+|.|...
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~Eg--~~V~i~I~~~ 35 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPEG--EEVKITIEEE 35 (60)
T ss_dssp --EEEEEETTEEEECS-----TT--EEEEEEE---
T ss_pred ceEEEEEECCEEEECCCCCCCCC--CEEEEEEecc
Confidence 45899999999986544333331 2344555543
No 63
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=71.79 E-value=10 Score=22.81 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=27.1
Q ss_pred eEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043603 50 KFWRQFRMPMSADLEHVKAHMENGVLRITVP 80 (114)
Q Consensus 50 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 80 (114)
...-.|.+|..++.++++..+.+.-|.|.+.
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3566788999999999999999999999986
No 64
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=68.91 E-value=12 Score=23.31 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=12.7
Q ss_pred ceEEEEeCCEEEEEEeC
Q 043603 65 HVKAHMENGVLRITVPN 81 (114)
Q Consensus 65 ~i~A~~~nGvL~I~~PK 81 (114)
.+++.++||-.++++-+
T Consensus 69 ~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEECCEEEEEEEE
Confidence 45677789988888754
No 65
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=68.75 E-value=12 Score=23.76 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=26.8
Q ss_pred eEEEEEECCCCCccCceEEEEeCCEEEEEE
Q 043603 50 KFWRQFRMPMSADLEHVKAHMENGVLRITV 79 (114)
Q Consensus 50 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~ 79 (114)
.-.-+|+||.++..+++...+.+.-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 455678999999999999999999999998
No 66
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=65.19 E-value=3.2 Score=28.97 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=19.3
Q ss_pred CCCCCccCceEEEEeCCEEEEEEeC
Q 043603 57 MPMSADLEHVKAHMENGVLRITVPN 81 (114)
Q Consensus 57 LP~~vd~~~i~A~~~nGvL~I~~PK 81 (114)
|-+++..+.--+.|.||||+|.++-
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HHhhcCccccccccccceEEEEecC
Confidence 4455555666788999999999984
No 67
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.96 E-value=8.5 Score=31.27 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=54.5
Q ss_pred CccceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEEEeeecceEEEEEECCCCCc-cCceEEEE--eCCEEEEE
Q 043603 2 LLFALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAERTMCKFWRQFRMPMSAD-LEHVKAHM--ENGVLRIT 78 (114)
Q Consensus 2 ~~~p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er~~g~f~r~~~LP~~vd-~~~i~A~~--~nGvL~I~ 78 (114)
|.+|..-+..+++.+.+.+ -.|-.....++........ ....|.|.-+..+|..+. ...-+|+| ++|...|.
T Consensus 1 Mltp~f~itqdee~~~L~I--~~p~~~a~~le~~a~~nm~---~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK 75 (466)
T KOG3247|consen 1 MLTPQFAITQDEEFCTLII--PRPLNQASKLEIDAAANMA---SFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVK 75 (466)
T ss_pred CCCceeeeeecCceEEEEe--eccccchhccchhhHhhhh---hhccchhHHhhcCcchhhhhccccCccccccceeEEe
Confidence 6789999999999999999 8885555555332222111 123456667778887764 34456777 48999999
Q ss_pred EeCcCCC
Q 043603 79 VPNLAGE 85 (114)
Q Consensus 79 ~PK~~~~ 85 (114)
+||..+.
T Consensus 76 ~~K~~~~ 82 (466)
T KOG3247|consen 76 VPKFHPG 82 (466)
T ss_pred ecCCCcc
Confidence 9996543
No 68
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=57.55 E-value=27 Score=21.24 Aligned_cols=29 Identities=14% Similarity=0.278 Sum_probs=24.9
Q ss_pred EEEEEECCCCCccCceEEEEeCCEEEEEE
Q 043603 51 FWRQFRMPMSADLEHVKAHMENGVLRITV 79 (114)
Q Consensus 51 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~ 79 (114)
-.-.|.+|.++..++++..|+..-|.|.+
T Consensus 10 V~v~i~~p~~~~~~dv~v~~~~~~l~v~~ 38 (85)
T cd06493 10 LTLTIRLPEDTTKEDIRIKFLPDHISIAL 38 (85)
T ss_pred EEEEEECCCCCChhhEEEEEecCEEEEEe
Confidence 45578899999999999999988888877
No 69
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=55.22 E-value=14 Score=24.06 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.8
Q ss_pred CceEEEEeCCEEEEEEe
Q 043603 64 EHVKAHMENGVLRITVP 80 (114)
Q Consensus 64 ~~i~A~~~nGvL~I~~P 80 (114)
..+.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 46778889999999998
No 70
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=54.32 E-value=17 Score=23.68 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.4
Q ss_pred CceEEEEeCCEEEEEEeC
Q 043603 64 EHVKAHMENGVLRITVPN 81 (114)
Q Consensus 64 ~~i~A~~~nGvL~I~~PK 81 (114)
..+.+.+.+|||+|.++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 467899999999999964
No 71
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=53.49 E-value=14 Score=24.14 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.5
Q ss_pred eEEEEeCCEEEEEEeCc
Q 043603 66 VKAHMENGVLRITVPNL 82 (114)
Q Consensus 66 i~A~~~nGvL~I~~PK~ 82 (114)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 67888999999999853
No 72
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=52.94 E-value=77 Score=22.78 Aligned_cols=78 Identities=10% Similarity=0.059 Sum_probs=46.8
Q ss_pred cceeeEEEcCCcEEEEEEccCC-CC-ccCCcccccccccEEEEeeecceEEEEEECCCCCccCceEEEEeCCEEEEEEeC
Q 043603 4 FALGDWELENSPNICSFIRIAT-GM-KSDDCNKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHMENGVLRITVPN 81 (114)
Q Consensus 4 ~p~~dv~e~~~~~~i~~~~~lP-Gv-~~edi~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK 81 (114)
.+.+.|.++=..+.|.+ .+| |+ +..+|.-......+... ..-..---.=.|...|+.+.-.-++++|.+.|.+-+
T Consensus 18 ~~~y~W~QtL~EV~i~i--~vp~~~~ksk~v~~~Iq~~hI~V~-~kg~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~ 94 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQI--PVPPGTAKSKDVHCSIQSKHIKVG-LKGQPPILDGELSHSVKVDESTWTIEDGKMIVILLK 94 (179)
T ss_pred ccceeeeeehhheEEEe--ecCCCCcccceEEEEeeeeEEEEe-cCCCCceecCccccccccccceEEecCCEEEEEEee
Confidence 46778888888998988 776 77 66676222211111100 000001111167888999999999999976666655
Q ss_pred cCC
Q 043603 82 LAG 84 (114)
Q Consensus 82 ~~~ 84 (114)
+..
T Consensus 95 K~~ 97 (179)
T KOG2265|consen 95 KSN 97 (179)
T ss_pred ccc
Confidence 443
No 73
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=52.36 E-value=14 Score=23.96 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.4
Q ss_pred ceEEEEeCCEEEEEEeC
Q 043603 65 HVKAHMENGVLRITVPN 81 (114)
Q Consensus 65 ~i~A~~~nGvL~I~~PK 81 (114)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 46788899999999984
No 74
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=49.53 E-value=40 Score=20.89 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=24.9
Q ss_pred EEEEEECCCC--CccCceEEEEeCCEEEEEEe
Q 043603 51 FWRQFRMPMS--ADLEHVKAHMENGVLRITVP 80 (114)
Q Consensus 51 f~r~~~LP~~--vd~~~i~A~~~nGvL~I~~P 80 (114)
-.-.|+||.+ ++..+++..+...-|.|.+.
T Consensus 10 v~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~ 41 (87)
T cd06492 10 VELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK 41 (87)
T ss_pred EEEEEECCCCCCccceEEEEEEecCEEEEEEC
Confidence 4456789876 89999999999999999884
No 75
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=47.45 E-value=54 Score=20.70 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=29.8
Q ss_pred ceEEEEEECCCCCccCceEEEEeCCEEEEEEeCcCC
Q 043603 49 CKFWRQFRMPMSADLEHVKAHMENGVLRITVPNLAG 84 (114)
Q Consensus 49 g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 84 (114)
..|+-.+.+. ++.++.|+.+..++.|+|.--+...
T Consensus 15 ~~f~v~ldv~-gF~pEDL~Vkv~~~~L~V~Gkh~~~ 49 (91)
T cd06480 15 EPWKVCVNVH-SFKPEELTVKTKDGFVEVSGKHEEQ 49 (91)
T ss_pred CcEEEEEEeC-CCCHHHcEEEEECCEEEEEEEECcc
Confidence 3688888884 7999999999999999999887654
No 76
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=44.23 E-value=18 Score=23.24 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=12.7
Q ss_pred EEEEeCCEEEEEEeC
Q 043603 67 KAHMENGVLRITVPN 81 (114)
Q Consensus 67 ~A~~~nGvL~I~~PK 81 (114)
.+.+.+|||+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 577889999999964
No 77
>cd07887 RHD-n_Dorsal_Dif N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Dorsal. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Dorsal and Dif (Dorsal-related immunity factor), and similar proteins. Dorsal and Dif are Rel-like transcription factors, which play roles in mediating innate immunity in Drosophila. They are activated via the Toll pathway. Cytoplasmic Dorsal/Dif are inactivated via forming a complex with Cactus, the Drosophila homologue of mammalian I-kappa B proteins. In response to signals, Cactus is degraded and Dorsal/Dif can be transported into the nucleus, where they act as transcription factors. Dorsal is also an essential gene in establishing the proper dorsal/ventral polarity in the developing embryo.
Probab=40.73 E-value=1.2e+02 Score=21.66 Aligned_cols=66 Identities=5% Similarity=-0.002 Sum_probs=35.9
Q ss_pred ccceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEEEeeecceEEEEEECCCCCccCceEEEEeC-CEEEEE
Q 043603 3 LFALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHMEN-GVLRIT 78 (114)
Q Consensus 3 ~~p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~n-GvL~I~ 78 (114)
.+|.+.|....+.-.|.+ .| |++++-.........-+..=..|-.. +.+ .++...|+|.| ||+.|+
T Consensus 39 T~PtVki~nY~G~a~I~v--sl--VT~d~p~rpHpH~LVGk~~C~~Gvc~--~~v----~p~~~~~~F~nLGIqcvk 105 (173)
T cd07887 39 TFPTIQVVNYDGRAVVVV--SC--VTKDEPFRPHPHNLVGKEGCKKGVCT--KKI----NPTEMRIVFQKLGIQCVK 105 (173)
T ss_pred cCCeEEEecccCCEEEEE--EE--EeCCCCCCCCCccccCccCCCCCeEE--EEe----CCCCcEEEeccCceEEEE
Confidence 367788887777777777 66 77776521111111111000122222 333 34567899987 999864
No 78
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=40.27 E-value=49 Score=20.37 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=26.2
Q ss_pred ccccEEEEeeecceEEEEEECCCCCccCc-eEEEEeCC-EEEEE
Q 043603 37 EREKRHRAERTMCKFWRQFRMPMSADLEH-VKAHMENG-VLRIT 78 (114)
Q Consensus 37 ~~~~~~~~er~~g~f~r~~~LP~~vd~~~-i~A~~~nG-vL~I~ 78 (114)
..+.|.+.....--|.|.|.+|++..+.. +.-+|.+| |-.|+
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~ 72 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQ 72 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEE
Confidence 34556666666667999999999987655 67788876 43344
No 79
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=39.77 E-value=20 Score=24.16 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=23.3
Q ss_pred EEECCCCCccCceE---EEE--eCCEEEEEEeCcCCC
Q 043603 54 QFRMPMSADLEHVK---AHM--ENGVLRITVPNLAGE 85 (114)
Q Consensus 54 ~~~LP~~vd~~~i~---A~~--~nGvL~I~~PK~~~~ 85 (114)
...+-.++|.++++ -.. +++.|+|++|..+--
T Consensus 45 ~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~i~ 81 (157)
T PF14014_consen 45 PGTVKAGIDLSKIKEEDIEVDEDGKTITITLPPPEIL 81 (157)
T ss_pred EEEEEEEEEhHHCCcceEEEcCCCCEEEEECCCcEEe
Confidence 33444567888887 566 789999999987643
No 80
>cd07934 RHD-n_NFkB2 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor kappa B2 (NF-kappa B2). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NF-kappa B2 family of transcription factors, a class I member of the NF-kappa B family. In class I NF-kappa Bs, the RHD domain co-occurs with C-terminal ankyrin repeats. NF-kappa B2 is commonly referred to as p100 or p52 (proteolytically processed form). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is
Probab=38.80 E-value=1.3e+02 Score=21.68 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=33.6
Q ss_pred cceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEEEeeecceEEEEEECCCCCccCceEEEEeC-CEEEEEEe
Q 043603 4 FALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHMEN-GVLRITVP 80 (114)
Q Consensus 4 ~p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~n-GvL~I~~P 80 (114)
+|.+.|....+.-.|.+ .| |++++-........+-......|.+ ++.+ .++...|+|.| ||+.|+=.
T Consensus 40 ~PtV~i~nY~G~a~I~V--sl--VT~d~p~rpHpH~LVGK~c~~~Gvc--~v~v----~p~~~~~~F~nLGIqcv~KK 107 (185)
T cd07934 40 YPTVKICNYVGMARIEV--DL--VTHTDPPRVHAHSLVGKHCNESGNC--SVDV----GPKDMTAQFSNLGILHVTKK 107 (185)
T ss_pred CCeEEEecCcCCEEEEE--EE--EeCCCCCCCCCeeccCcccccCceE--EEEE----CCCccEEEecCcceEEEecc
Confidence 57777777666666655 43 4555432111111111111112322 2233 34568899988 99888643
No 81
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=37.67 E-value=1e+02 Score=22.20 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=48.1
Q ss_pred CccceeeEEEcCCcEEEEEEccCCCCccCCcccccccccEEEEeee---cceEEEEEECCCCCccCceEEEEeCCEEEEE
Q 043603 2 LLFALGDWELENSPNICSFIRIATGMKSDDCNKEVEREKRHRAERT---MCKFWRQFRMPMSADLEHVKAHMENGVLRIT 78 (114)
Q Consensus 2 ~~~p~~dv~e~~~~~~i~~~~~lPGv~~edi~~~~~~~~~~~~er~---~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~ 78 (114)
+..|.+-|.+..+-+.+++ .++--+-..+..+. ..+..+... .-.+...|.|=..||+++.+-+-. +-+...
T Consensus 5 ~~~p~v~Waqr~~~vyltv--~Ved~~d~~v~~e~--~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~-~r~if~ 79 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTV--CVEDAKDVHVNLEP--SKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRT-SRSIFC 79 (180)
T ss_pred ccCCcchhhhhcCeEEEEE--EeccCccceeeccc--cEEEEEeccCCCceeeEEeeehhhhcCHhhcccccc-ceEEEE
Confidence 3578999999999999999 88766555553222 233322221 113666788888999998776554 544444
Q ss_pred EeCc
Q 043603 79 VPNL 82 (114)
Q Consensus 79 ~PK~ 82 (114)
++++
T Consensus 80 i~~K 83 (180)
T KOG3158|consen 80 ILRK 83 (180)
T ss_pred EEEc
Confidence 4443
No 82
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=36.84 E-value=1.3e+02 Score=22.45 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=28.2
Q ss_pred cCCCCccCCc-------------ccccccccEEEEeeecceEEEEEECCCCCccCceEEEEeCCEEEEE
Q 043603 23 IATGMKSDDC-------------NKEVEREKRHRAERTMCKFWRQFRMPMSADLEHVKAHMENGVLRIT 78 (114)
Q Consensus 23 ~lPGv~~edi-------------~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~nGvL~I~ 78 (114)
.|||+..+ + ....+...++.-. ..|..-|+++|...-|+|.|.. ..||.+.|+
T Consensus 16 ~l~g~~~e-~SGLTy~pd~~tLfaV~d~~~~i~els-~~G~vlr~i~l~g~~D~EgI~y-~g~~~~vl~ 81 (248)
T PF06977_consen 16 PLPGILDE-LSGLTYNPDTGTLFAVQDEPGEIYELS-LDGKVLRRIPLDGFGDYEGITY-LGNGRYVLS 81 (248)
T ss_dssp E-TT--S--EEEEEEETTTTEEEEEETTTTEEEEEE-TT--EEEEEE-SS-SSEEEEEE--STTEEEEE
T ss_pred ECCCccCC-ccccEEcCCCCeEEEEECCCCEEEEEc-CCCCEEEEEeCCCCCCceeEEE-ECCCEEEEE
Confidence 78999875 5 1122233333333 3588999999998889999875 567766664
No 83
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=33.49 E-value=52 Score=19.86 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=17.5
Q ss_pred eCCEEEEEEeCcCCCCCCCCeEEEEecCC
Q 043603 71 ENGVLRITVPNLAGEQKRQPKVINIDEES 99 (114)
Q Consensus 71 ~nGvL~I~~PK~~~~~~~~~~~I~I~~~~ 99 (114)
.+|.|.+.+||+.-+ ...+.++..+
T Consensus 9 ~~g~l~~YvpKKDLE----E~Vv~~e~~~ 33 (67)
T TIGR02934 9 RAGELSAYVPKKDLE----EVIVSVEKEE 33 (67)
T ss_pred CCCCEEEEEECCcch----hheeeeecCc
Confidence 357899999998876 3456665443
No 84
>cd07935 RHD-n_NFkB1 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa B1 (NF-kappa B1). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NF-kappa B1 family of transcription factors, a class I member of the NF-kappa B family. In class I NF-kappa Bs, the RHD domain co-occurs with C-terminal ankyrin repeats. NF-kappa B1 is commonly referred to as p105 or p50 (proteolytically processed form). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex
Probab=32.50 E-value=2e+02 Score=21.08 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=14.7
Q ss_pred CccCceEEEEeC-CEEEEEEe
Q 043603 61 ADLEHVKAHMEN-GVLRITVP 80 (114)
Q Consensus 61 vd~~~i~A~~~n-GvL~I~~P 80 (114)
+++++..|+|.| ||+.|+=.
T Consensus 86 v~p~d~~~~F~NLGIqcV~KK 106 (202)
T cd07935 86 AGPKDMVVGFANLGILHVTKK 106 (202)
T ss_pred eCCCcceEEecCcceEEEecc
Confidence 345667899988 99988743
No 85
>cd07883 RHD-n_NFkB N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa light polypeptide gene enhancer in B-cells (NF-kappa B). Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NF-kappa B1 and B2 families of transcription factors, also referred to as class I members of the NF-kappa B family. In class I NF-kappa Bs, the RHD domain co-occurs with C-terminal ankyrin repeats. Family members include NF-kappa B1 and NF-kappa B2. NF-kappa B1 is commonly referred to as p105 or p50 (proteolytically processed form), while NF-kappa B2 is called p100 or p52 (proteolytically processed form). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large
Probab=32.41 E-value=2e+02 Score=21.05 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=15.4
Q ss_pred CccCceEEEEeC-CEEEEEEe
Q 043603 61 ADLEHVKAHMEN-GVLRITVP 80 (114)
Q Consensus 61 vd~~~i~A~~~n-GvL~I~~P 80 (114)
+.++...|+|.| ||+.|+=.
T Consensus 86 v~p~~~~~~F~nLGIqcV~KK 106 (197)
T cd07883 86 VGPKDMTAQFPNLGILHVTKK 106 (197)
T ss_pred eCCCCcEEEecCcceEEEecc
Confidence 455688899988 99988743
No 86
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=32.12 E-value=49 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=17.4
Q ss_pred cCceEEEEeCCEEEEEEeCcCC
Q 043603 63 LEHVKAHMENGVLRITVPNLAG 84 (114)
Q Consensus 63 ~~~i~A~~~nGvL~I~~PK~~~ 84 (114)
.+.-.+.++||++.|++-|...
T Consensus 13 ~~~~~VvldNGiVqVtls~p~G 34 (203)
T PF06045_consen 13 VQGRQVVLDNGIVQVTLSKPGG 34 (203)
T ss_pred EcCCEEEEECCEEEEEEcCCCc
Confidence 3445588999999999999654
No 87
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.30 E-value=2.4e+02 Score=23.48 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=41.8
Q ss_pred eecceEEEEEECCCCCccCceEEEEe---CCEEEEEEeCcCCCCCCCCeEEEEecCCCCCCcchh
Q 043603 46 RTMCKFWRQFRMPMSADLEHVKAHME---NGVLRITVPNLAGEQKRQPKVINIDEESGNSSGEVI 107 (114)
Q Consensus 46 r~~g~f~r~~~LP~~vd~~~i~A~~~---nGvL~I~~PK~~~~~~~~~~~I~I~~~~~~~~~~~~ 107 (114)
+..|.|..+=-.|.+--.-+|..+|+ ||||.|+.--+... ...+|.|.-..+.-..+.+
T Consensus 484 ~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg---~~~kitItNd~~rLt~EdI 545 (663)
T KOG0100|consen 484 HLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTG---KKEKITITNDKGRLTPEDI 545 (663)
T ss_pred cccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCC---CcceEEEecCCCCCCHHHH
Confidence 34577776666666666678888885 99999998876443 3678998887765554444
No 88
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=29.50 E-value=95 Score=27.30 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=31.0
Q ss_pred eeecce---EEEEEECCCCCccCceEEEEeCCEEEEEEeCcCCCCCCCCeEEEE
Q 043603 45 ERTMCK---FWRQFRMPMSADLEHVKAHMENGVLRITVPNLAGEQKRQPKVINI 95 (114)
Q Consensus 45 er~~g~---f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I 95 (114)
-+..|. |....+.-+.+|-..+...|++|+|++.||-.+.. .-..|.|
T Consensus 725 vkg~G~lg~YsS~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~---~~~~v~~ 775 (777)
T PLN02711 725 VKGSGEMRVFASEKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS---GLSLIEY 775 (777)
T ss_pred EEeeeEEEEEecCCCeEEEECCEEeeeEecCCEEEEEecCCCcC---CceeEEE
Confidence 344454 44444444556777777788899999999987632 2455554
No 89
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.04 E-value=4.7 Score=24.40 Aligned_cols=12 Identities=50% Similarity=0.728 Sum_probs=9.7
Q ss_pred ceEEEEeCCEEE
Q 043603 65 HVKAHMENGVLR 76 (114)
Q Consensus 65 ~i~A~~~nGvL~ 76 (114)
=|.|-|+||||.
T Consensus 6 IIEaiYEnGVfK 17 (67)
T COG2880 6 IIEAIYENGVLK 17 (67)
T ss_pred HHHHHHhccccc
Confidence 366889999986
No 90
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=28.07 E-value=57 Score=21.22 Aligned_cols=16 Identities=6% Similarity=0.385 Sum_probs=12.3
Q ss_pred ceEEEEeCCEEEEEEe
Q 043603 65 HVKAHMENGVLRITVP 80 (114)
Q Consensus 65 ~i~A~~~nGvL~I~~P 80 (114)
.+.+.+.+|||+|+..
T Consensus 29 d~D~e~~~gVLtl~~~ 44 (103)
T PRK01379 29 SIDVDLQGDILNLDTD 44 (103)
T ss_pred ceeeeccCCEEEEEeC
Confidence 3667788999999854
No 91
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=26.43 E-value=69 Score=21.07 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.9
Q ss_pred eEEEEeCCEEEEEEeCc
Q 043603 66 VKAHMENGVLRITVPNL 82 (114)
Q Consensus 66 i~A~~~nGvL~I~~PK~ 82 (114)
+-+.+.+|||+|+++..
T Consensus 30 ~D~d~qg~VlTl~f~ng 46 (106)
T COG1965 30 IDCEIQGGVLTLTFDNG 46 (106)
T ss_pred cceecCCCEEEEEECCC
Confidence 55777899999999875
No 92
>PF14864 Alkyl_sulf_C: Alkyl sulfatase C-terminal; PDB: 2CG2_A 2CG3_A 2CFU_A 2CFZ_A 2YHE_C.
Probab=25.37 E-value=1.5e+02 Score=19.33 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=24.3
Q ss_pred EEEEEECCCCCccCceEEEEeCCEEEEEEeCcCCCCCCCCeEEEEec
Q 043603 51 FWRQFRMPMSADLEHVKAHMENGVLRITVPNLAGEQKRQPKVINIDE 97 (114)
Q Consensus 51 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~~ 97 (114)
+.-.|.+|+. -+.....++||+|+++--..... ..-.|.+..
T Consensus 34 ~~in~~~~D~--~e~~~l~l~NgvL~~~~~~~~~~---ad~tlt~~~ 75 (125)
T PF14864_consen 34 FTINFIFTDT--GEQYTLELRNGVLNYRKGSPSPD---ADATLTLTR 75 (125)
T ss_dssp EEEEEEETTT--TEEEEEEEETTEEEEEET---TT----SEEEEE-H
T ss_pred EEEEEEEcCC--CCeEEEEEECCEEEeecCCCCCC---CCEEEEECH
Confidence 5556677743 46778889999999965433222 134555543
No 93
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=24.31 E-value=72 Score=19.68 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.4
Q ss_pred ceEEEEeCCEEEEEEeCc
Q 043603 65 HVKAHMENGVLRITVPNL 82 (114)
Q Consensus 65 ~i~A~~~nGvL~I~~PK~ 82 (114)
.|+|+|.+.+..+++|..
T Consensus 2 ~vK~~~~~d~~r~~l~~~ 19 (82)
T cd06407 2 RVKATYGEEKIRFRLPPS 19 (82)
T ss_pred EEEEEeCCeEEEEEcCCC
Confidence 479999999999999953
No 94
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=24.14 E-value=90 Score=18.42 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.3
Q ss_pred EEEeCCEEEEEEeC
Q 043603 68 AHMENGVLRITVPN 81 (114)
Q Consensus 68 A~~~nGvL~I~~PK 81 (114)
..++||+|.|.+.-
T Consensus 44 ~~i~~g~L~i~v~~ 57 (89)
T PF05258_consen 44 VSIKDGTLVIEVDS 57 (89)
T ss_pred EEEECCEEEEEECC
Confidence 45789999998864
No 95
>PF02200 STE: STE like transcription factor; InterPro: IPR003120 This family consists of transcription factors related to STE and is found associated with the C2H2 zinc finger in some proteins.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.63 E-value=1.7e+02 Score=19.12 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=21.5
Q ss_pred EEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043603 51 FWRQFRMPMSADLEHVKAHMENGVLRITVP 80 (114)
Q Consensus 51 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 80 (114)
--|+|.||.+ +-|++.|-||+..|+=-
T Consensus 3 ~irr~~L~~~---e~isCV~Wn~l~~ItGT 29 (110)
T PF02200_consen 3 VIRRYYLPNG---EFISCVLWNNLFHITGT 29 (110)
T ss_pred eeeEEecCCC---CEEEEEEEccEEEEecc
Confidence 3578899864 48999999999999843
No 96
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=23.11 E-value=1e+02 Score=20.93 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=13.9
Q ss_pred ceEEEEeCCEEEEEEe
Q 043603 65 HVKAHMENGVLRITVP 80 (114)
Q Consensus 65 ~i~A~~~nGvL~I~~P 80 (114)
+.+++|++|||.+.+-
T Consensus 102 Gfr~~Fd~gilqL~F~ 117 (125)
T PF09732_consen 102 GFRCSFDRGILQLYFN 117 (125)
T ss_pred CceEEeeCCEEEEEEE
Confidence 7889999999998764
No 97
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=23.04 E-value=76 Score=18.97 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=15.1
Q ss_pred eCCEEEEEEeCcCCCCCCCCeEEEEe
Q 043603 71 ENGVLRITVPNLAGEQKRQPKVINID 96 (114)
Q Consensus 71 ~nGvL~I~~PK~~~~~~~~~~~I~I~ 96 (114)
.+|.|.+.+||+.-+ ...+.++
T Consensus 9 ~~G~ls~YVpKKDLE----E~Vv~~E 30 (64)
T PF06988_consen 9 GAGGLSAYVPKKDLE----EPVVSME 30 (64)
T ss_dssp SS--EEEEETTTTEE----EEEEEES
T ss_pred CCcCEEEEEeCCccc----cceeeee
Confidence 358999999999876 4466665
No 98
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=2.2e+02 Score=24.49 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=40.8
Q ss_pred ecceEEEEEECCCCCccCceEEEEe---CCEEEEEEeCcCCCCCCCCeEEEEecCCCCCCcch
Q 043603 47 TMCKFWRQFRMPMSADLEHVKAHME---NGVLRITVPNLAGEQKRQPKVINIDEESGNSSGEV 106 (114)
Q Consensus 47 ~~g~f~r~~~LP~~vd~~~i~A~~~---nGvL~I~~PK~~~~~~~~~~~I~I~~~~~~~~~~~ 106 (114)
..|.|.-.---|...=..+|.+.|+ ||+|.|+..-....+ .-+|.|....+.-+.+.
T Consensus 459 ~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK---~~~i~i~n~~grls~~~ 518 (620)
T KOG0101|consen 459 LLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGK---ENKITITNDKGRLSKEE 518 (620)
T ss_pred ccceeeecCCCccccCCcceeEEEecCCCcEEEEeeccccCCc---cceEEEecccceeehhh
Confidence 4577887777777777888999984 899999999877653 55666666654443333
No 99
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.84 E-value=1.1e+02 Score=19.09 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=22.5
Q ss_pred ceEEEEE-ECCCCCccCceEEEEeCC--EEEEEEeC
Q 043603 49 CKFWRQF-RMPMSADLEHVKAHMENG--VLRITVPN 81 (114)
Q Consensus 49 g~f~r~~-~LP~~vd~~~i~A~~~nG--vL~I~~PK 81 (114)
|.-.-.| .||..+|++.+..+..+| |+.|.+-.
T Consensus 22 G~~~i~~~~Lp~~~d~~Sl~V~~~g~~~i~~v~~~~ 57 (104)
T PF13600_consen 22 GENEIIFEGLPPSLDPDSLRVSGEGGVTILSVRFRR 57 (104)
T ss_pred CceEEEEeCCCcccCCCcEEEEecCCEEEEEEEEEE
Confidence 3333334 589999999999998876 45555443
No 100
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=20.69 E-value=1.2e+02 Score=18.70 Aligned_cols=21 Identities=24% Similarity=0.310 Sum_probs=17.4
Q ss_pred cCceEEEEeCCEEEEEEeCcC
Q 043603 63 LEHVKAHMENGVLRITVPNLA 83 (114)
Q Consensus 63 ~~~i~A~~~nGvL~I~~PK~~ 83 (114)
.++|.++|+||-|.+-+-+..
T Consensus 7 Td~V~gkf~ng~l~LY~~~e~ 27 (76)
T PF10830_consen 7 TDKVTGKFKNGGLELYHDNEM 27 (76)
T ss_pred ecceEEEecCCcEEEEeccce
Confidence 478999999999999887643
No 101
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=20.43 E-value=1.7e+02 Score=16.20 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=16.0
Q ss_pred CCccCceEEEEeCCEEEEEEe
Q 043603 60 SADLEHVKAHMENGVLRITVP 80 (114)
Q Consensus 60 ~vd~~~i~A~~~nGvL~I~~P 80 (114)
.++..+|.....||.++|+=.
T Consensus 13 ~~~~~~i~v~v~~g~v~L~G~ 33 (64)
T PF04972_consen 13 WLPDSNISVSVENGVVTLSGE 33 (64)
T ss_dssp CTT-TTEEEEEECTEEEEEEE
T ss_pred ccCCCeEEEEEECCEEEEEee
Confidence 456668999999999888744
No 102
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=20.42 E-value=94 Score=18.28 Aligned_cols=11 Identities=45% Similarity=0.797 Sum_probs=9.1
Q ss_pred EEeCCEEEEEE
Q 043603 69 HMENGVLRITV 79 (114)
Q Consensus 69 ~~~nGvL~I~~ 79 (114)
.+.+|+|+|.+
T Consensus 63 ~i~~G~l~i~V 73 (76)
T PF08479_consen 63 DISDGVLTIRV 73 (76)
T ss_dssp EETTSEEEEEE
T ss_pred ecCCCEEEEEE
Confidence 46899999986
No 103
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=20.40 E-value=2.8e+02 Score=18.65 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=28.9
Q ss_pred EEEEEECCCCCccCceEEEEeCCEEEEEEeCcCCCCCCCCeEEEEecCC
Q 043603 51 FWRQFRMPMSADLEHVKAHMENGVLRITVPNLAGEQKRQPKVINIDEES 99 (114)
Q Consensus 51 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~~~~ 99 (114)
+.-++.-|+++ .+.++...+||.|.|...+.-... .+-+|.|....
T Consensus 21 ~~v~v~~~~~l-~~~i~~~v~~g~L~I~~~~~~~~~--~~~~v~V~~~~ 66 (181)
T PF10988_consen 21 PSVEVEADENL-LDRIKVEVKDGTLKISYKKNISGS--KPVKVRVTAPS 66 (181)
T ss_dssp -EEEEEEEHHH-HCCEEEEEETTEEEEEE-SCCTCT--STEEEEEEES-
T ss_pred cEEEEEEChhh-cceEEEEEECCEEEEEECCCcCCC--ccEEEEEEcCc
Confidence 44555555544 678899999999999999654432 24566666554
No 104
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=20.15 E-value=69 Score=26.77 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.4
Q ss_pred ceEEEEeCCEEEEEEeC
Q 043603 65 HVKAHMENGVLRITVPN 81 (114)
Q Consensus 65 ~i~A~~~nGvL~I~~PK 81 (114)
+.+|+|+||||.+.+--
T Consensus 600 GfKcqF~ngvlqL~F~F 616 (623)
T KOG2370|consen 600 GFKCQFDNGVLQLWFRF 616 (623)
T ss_pred CccceeeCCeeeeeehh
Confidence 67899999999998753
No 105
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=20.10 E-value=1.8e+02 Score=16.76 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEeCCEEEEEEeCcCCCCCCCCeEEEEecCC
Q 043603 67 KAHMENGVLRITVPNLAGEQKRQPKVINIDEES 99 (114)
Q Consensus 67 ~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~~~~ 99 (114)
.|.+++| +.|.+|---.. .-+|-|....
T Consensus 23 ~A~letG-~~i~VP~FI~~----Gd~I~V~T~~ 50 (56)
T cd05794 23 PATLETG-AEVQVPLFIKE----GEKIKVDTRT 50 (56)
T ss_pred eEEECCC-CEEEcCCeecC----CCEEEEECCC
Confidence 3889999 68999986543 3366666554
Done!