Query 043604
Match_columns 268
No_of_seqs 253 out of 1360
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 11:00:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.7 4.4E-18 1.5E-22 121.7 7.1 88 35-123 3-92 (94)
2 1wd2_A Ariadne-1 protein homol 99.7 9.5E-18 3.2E-22 108.4 1.7 42 195-236 3-48 (60)
3 2ct7_A Ring finger protein 31; 99.4 4.3E-15 1.5E-19 103.8 -2.7 74 105-185 3-80 (86)
4 2jmo_A Parkin; IBR, E3 ligase, 99.4 1.1E-14 3.9E-19 100.1 -2.3 70 103-178 2-76 (80)
5 4ap4_A E3 ubiquitin ligase RNF 99.0 2E-11 6.7E-16 92.2 -2.7 119 35-211 5-126 (133)
6 3hcs_A TNF receptor-associated 98.9 3.1E-10 1.1E-14 89.5 3.1 102 35-161 16-120 (170)
7 2ct2_A Tripartite motif protei 98.7 7.1E-09 2.4E-13 72.3 3.2 63 34-103 12-74 (88)
8 2ecm_A Ring finger and CHY zin 98.6 1.7E-08 5.7E-13 63.9 3.6 52 35-96 3-54 (55)
9 1rmd_A RAG1; V(D)J recombinati 98.6 3E-08 1E-12 73.0 5.1 83 37-143 23-105 (116)
10 1jm7_A BRCA1, breast cancer ty 98.6 2.8E-08 9.4E-13 72.6 4.3 70 37-117 21-91 (112)
11 2ecv_A Tripartite motif-contai 98.6 3.6E-08 1.2E-12 68.1 3.5 59 34-100 16-74 (85)
12 1g25_A CDK-activating kinase a 98.6 1.6E-08 5.3E-13 66.4 1.5 59 37-104 3-62 (65)
13 3hct_A TNF receptor-associated 98.6 5.4E-08 1.8E-12 71.8 4.5 85 35-144 16-100 (118)
14 2ecw_A Tripartite motif-contai 98.5 4.7E-08 1.6E-12 67.5 3.3 59 35-101 17-75 (85)
15 2egp_A Tripartite motif-contai 98.5 8.6E-09 3E-13 70.4 -0.8 60 35-101 10-69 (79)
16 2ysl_A Tripartite motif-contai 98.5 2.2E-08 7.7E-13 67.2 1.1 55 34-99 17-71 (73)
17 2ecy_A TNF receptor-associated 98.5 5.1E-08 1.7E-12 64.1 2.8 52 35-99 13-64 (66)
18 2kiz_A E3 ubiquitin-protein li 98.5 1.3E-07 4.3E-12 62.7 4.7 53 34-97 11-63 (69)
19 2djb_A Polycomb group ring fin 98.5 6.4E-08 2.2E-12 64.8 2.7 56 35-103 13-68 (72)
20 2xeu_A Ring finger protein 4; 98.5 3.6E-08 1.2E-12 64.3 1.3 57 36-102 2-61 (64)
21 3ng2_A RNF4, snurf, ring finge 98.5 2.9E-08 1E-12 66.2 0.7 59 34-102 7-68 (71)
22 2ysj_A Tripartite motif-contai 98.4 2.2E-07 7.5E-12 60.4 4.4 46 34-88 17-62 (63)
23 1e4u_A Transcriptional repress 98.4 1.7E-07 5.9E-12 63.7 3.6 57 35-100 9-65 (78)
24 3lrq_A E3 ubiquitin-protein li 98.4 2.9E-07 1E-11 65.8 4.4 55 36-103 21-76 (100)
25 3knv_A TNF receptor-associated 98.4 2E-08 7E-13 76.5 -2.1 88 34-143 28-121 (141)
26 2ep4_A Ring finger protein 24; 98.4 2.3E-07 7.9E-12 62.3 3.3 52 34-96 12-63 (74)
27 1t1h_A Gspef-atpub14, armadill 98.4 2.1E-07 7.3E-12 63.2 3.2 66 35-113 6-72 (78)
28 2d8t_A Dactylidin, ring finger 98.4 7.1E-08 2.4E-12 64.4 0.8 55 35-103 13-67 (71)
29 2ea6_A Ring finger protein 4; 98.3 1.8E-07 6.1E-12 61.9 2.5 53 34-96 12-67 (69)
30 2csy_A Zinc finger protein 183 98.3 3.6E-07 1.2E-11 62.6 4.0 49 34-96 12-60 (81)
31 3ztg_A E3 ubiquitin-protein li 98.3 1.4E-07 5E-12 66.2 1.6 50 34-95 10-60 (92)
32 2ect_A Ring finger protein 126 98.3 6.5E-08 2.2E-12 65.8 -0.2 57 34-101 12-68 (78)
33 1iym_A EL5; ring-H2 finger, ub 98.3 2.8E-07 9.6E-12 58.1 2.7 50 36-96 4-54 (55)
34 2yur_A Retinoblastoma-binding 98.3 3.4E-07 1.2E-11 61.6 2.7 50 34-95 12-62 (74)
35 2ecj_A Tripartite motif-contai 98.3 3.5E-07 1.2E-11 58.3 2.4 46 34-88 12-57 (58)
36 1x4j_A Ring finger protein 38; 98.3 2.2E-07 7.6E-12 62.6 1.3 52 35-97 21-72 (75)
37 2y43_A E3 ubiquitin-protein li 98.2 3.6E-07 1.2E-11 65.1 2.2 52 36-100 21-72 (99)
38 1bor_A Transcription factor PM 98.2 2.5E-07 8.6E-12 58.7 0.7 47 34-97 3-49 (56)
39 1z6u_A NP95-like ring finger p 98.2 1.2E-06 4.1E-11 67.3 4.3 50 36-98 77-126 (150)
40 2l0b_A E3 ubiquitin-protein li 98.2 4.8E-07 1.6E-11 63.5 1.7 52 35-97 38-89 (91)
41 3fl2_A E3 ubiquitin-protein li 98.2 1.1E-06 3.7E-11 65.3 3.6 49 36-97 51-99 (124)
42 1v87_A Deltex protein 2; ring- 98.2 1.6E-06 5.5E-11 63.3 4.2 55 37-96 25-93 (114)
43 3l11_A E3 ubiquitin-protein li 98.1 4.6E-07 1.6E-11 66.4 1.2 48 37-97 15-62 (115)
44 4ayc_A E3 ubiquitin-protein li 98.1 2.3E-07 8E-12 70.3 -0.5 46 37-96 53-98 (138)
45 2yu4_A E3 SUMO-protein ligase 98.1 1.8E-06 6.1E-11 60.9 3.5 59 35-99 5-65 (94)
46 1chc_A Equine herpes virus-1 r 98.0 2.2E-06 7.4E-11 56.4 2.9 48 36-96 4-51 (68)
47 2kr4_A Ubiquitin conjugation f 98.0 4.5E-06 1.5E-10 57.6 3.9 51 35-99 12-62 (85)
48 2ckl_A Polycomb group ring fin 98.0 1.8E-06 6.1E-11 62.5 1.3 50 35-97 13-62 (108)
49 1jm7_B BARD1, BRCA1-associated 97.9 8.8E-07 3E-11 65.1 -0.7 47 36-98 21-68 (117)
50 2ecn_A Ring finger protein 141 97.9 2.4E-07 8.4E-12 61.5 -3.4 48 35-97 13-60 (70)
51 4ic3_A E3 ubiquitin-protein li 97.8 1.9E-06 6.5E-11 57.9 -0.4 42 37-96 24-66 (74)
52 2ecl_A Ring-box protein 2; RNF 97.8 4E-06 1.4E-10 57.3 0.2 54 35-98 13-77 (81)
53 1wgm_A Ubiquitin conjugation f 97.8 7.2E-06 2.5E-10 58.2 1.6 50 35-98 20-70 (98)
54 2ecg_A Baculoviral IAP repeat- 97.7 8.1E-06 2.8E-10 54.9 1.5 43 37-97 25-68 (75)
55 2f42_A STIP1 homology and U-bo 97.7 2.4E-05 8.1E-10 61.5 4.4 53 34-99 103-155 (179)
56 2ckl_B Ubiquitin ligase protei 97.7 1.5E-05 5.1E-10 62.1 2.9 48 37-96 54-101 (165)
57 2kre_A Ubiquitin conjugation f 97.7 5.5E-06 1.9E-10 59.0 0.1 50 35-98 27-76 (100)
58 4ap4_A E3 ubiquitin ligase RNF 97.6 1.2E-05 4E-10 60.0 1.2 59 34-102 69-130 (133)
59 2c2l_A CHIP, carboxy terminus 97.6 2.4E-05 8.2E-10 65.9 3.2 53 34-99 205-257 (281)
60 2ct7_A Ring finger protein 31; 97.6 4.6E-05 1.6E-09 52.6 3.8 39 196-234 23-63 (86)
61 2d8s_A Cellular modulator of i 97.6 4.9E-05 1.7E-09 51.7 3.4 54 35-98 13-71 (80)
62 3htk_C E3 SUMO-protein ligase 97.5 1.3E-05 4.5E-10 66.3 0.1 58 34-100 178-235 (267)
63 2y1n_A E3 ubiquitin-protein li 97.5 4.9E-05 1.7E-09 66.7 3.0 51 35-98 330-380 (389)
64 2ea5_A Cell growth regulator w 97.5 4.4E-05 1.5E-09 50.2 2.0 45 35-97 13-58 (68)
65 3dpl_R Ring-box protein 1; ubi 97.4 8.2E-05 2.8E-09 53.4 3.2 53 35-97 35-101 (106)
66 2yho_A E3 ubiquitin-protein li 97.4 1.5E-05 5.3E-10 54.1 -1.1 43 37-97 18-61 (79)
67 2jmo_A Parkin; IBR, E3 ligase, 97.4 3.8E-05 1.3E-09 52.2 0.8 39 196-234 23-70 (80)
68 2vje_A E3 ubiquitin-protein li 97.3 6.7E-05 2.3E-09 48.6 1.6 48 37-96 8-56 (64)
69 2vje_B MDM4 protein; proto-onc 97.2 7.6E-05 2.6E-09 48.2 1.0 48 37-96 7-55 (63)
70 4a0k_B E3 ubiquitin-protein li 97.1 9.3E-05 3.2E-09 54.0 0.5 52 36-97 47-112 (117)
71 2ct0_A Non-SMC element 1 homol 97.0 0.00032 1.1E-08 46.7 2.2 52 34-96 12-63 (74)
72 3k1l_B Fancl; UBC, ring, RWD, 96.8 0.0011 3.7E-08 56.9 4.7 62 34-97 305-373 (381)
73 3t6p_A Baculoviral IAP repeat- 96.3 0.00043 1.5E-08 60.1 -1.2 44 35-96 293-337 (345)
74 1wd2_A Ariadne-1 protein homol 96.0 0.0032 1.1E-07 40.0 2.3 39 125-170 5-45 (60)
75 1vyx_A ORF K3, K3RING; zinc-bi 95.0 0.042 1.4E-06 34.7 4.7 50 35-96 4-58 (60)
76 2jrp_A Putative cytoplasmic pr 94.7 0.026 9E-07 37.7 3.4 28 200-235 33-64 (81)
77 3vk6_A E3 ubiquitin-protein li 94.7 0.013 4.3E-07 40.9 1.9 46 38-95 2-47 (101)
78 2bay_A PRE-mRNA splicing facto 94.4 0.018 6.1E-07 36.6 1.9 52 37-102 3-55 (61)
79 2cs3_A Protein C14ORF4, MY039 92.1 0.3 1E-05 32.3 5.0 66 34-106 12-89 (93)
80 2jun_A Midline-1; B-BOX, TRIM, 91.7 0.095 3.2E-06 36.6 2.5 33 37-70 3-35 (101)
81 1pft_A TFIIB, PFTFIIBN; N-term 89.6 0.35 1.2E-05 29.0 3.4 27 198-224 5-34 (50)
82 2jrp_A Putative cytoplasmic pr 88.6 0.32 1.1E-05 32.5 2.8 51 199-251 3-66 (81)
83 3nw0_A Non-structural maintena 87.9 0.39 1.3E-05 39.2 3.6 54 34-98 177-230 (238)
84 1vq8_Z 50S ribosomal protein L 87.8 0.26 9E-06 33.2 2.1 36 196-234 25-62 (83)
85 2jr6_A UPF0434 protein NMA0874 86.1 0.62 2.1E-05 30.0 3.0 28 197-224 7-36 (68)
86 3j20_Y 30S ribosomal protein S 85.8 0.37 1.3E-05 29.1 1.8 27 197-223 18-45 (50)
87 2k4x_A 30S ribosomal protein S 85.7 0.34 1.2E-05 29.9 1.6 28 197-224 17-46 (55)
88 2jne_A Hypothetical protein YF 85.0 0.81 2.8E-05 31.4 3.3 34 199-234 33-73 (101)
89 3lrq_A E3 ubiquitin-protein li 84.5 0.22 7.4E-06 34.7 0.3 38 199-241 23-63 (100)
90 2ecy_A TNF receptor-associated 82.4 0.45 1.5E-05 30.0 1.2 32 198-234 15-47 (66)
91 1iym_A EL5; ring-H2 finger, ub 82.4 0.45 1.6E-05 28.7 1.1 37 199-237 6-44 (55)
92 1wg2_A Zinc finger (AN1-like) 81.9 2 7E-05 27.1 4.0 39 197-242 14-53 (64)
93 2ysj_A Tripartite motif-contai 81.8 0.32 1.1E-05 30.4 0.3 32 198-234 20-52 (63)
94 1wfh_A Zinc finger (AN1-like) 81.6 2.3 7.8E-05 26.9 4.1 39 197-242 14-53 (64)
95 4ayc_A E3 ubiquitin-protein li 81.2 0.86 2.9E-05 33.6 2.5 39 199-242 54-93 (138)
96 2d8t_A Dactylidin, ring finger 80.6 0.53 1.8E-05 30.3 1.0 37 198-239 15-52 (71)
97 2ysl_A Tripartite motif-contai 80.5 0.93 3.2E-05 29.0 2.2 32 198-234 20-52 (73)
98 2ect_A Ring finger protein 126 79.8 2.1 7.2E-05 27.8 3.9 43 198-242 15-58 (78)
99 3ng2_A RNF4, snurf, ring finge 79.6 0.37 1.3E-05 30.8 0.0 44 197-240 9-55 (71)
100 1wfl_A Zinc finger protein 216 78.2 1.9 6.6E-05 28.1 3.1 38 198-242 25-63 (74)
101 2ckl_A Polycomb group ring fin 78.1 0.66 2.2E-05 32.6 0.9 39 198-241 15-55 (108)
102 2djb_A Polycomb group ring fin 77.5 0.7 2.4E-05 29.7 0.9 38 198-240 15-54 (72)
103 2xeu_A Ring finger protein 4; 77.5 0.58 2E-05 29.1 0.5 42 199-240 4-48 (64)
104 2hf1_A Tetraacyldisaccharide-1 77.4 1.7 5.8E-05 28.0 2.7 26 198-223 8-34 (68)
105 2k5c_A Uncharacterized protein 77.4 2.7 9.3E-05 27.7 3.6 22 84-107 9-31 (95)
106 2js4_A UPF0434 protein BB2007; 77.0 2.5 8.4E-05 27.4 3.4 28 197-224 7-36 (70)
107 2pk7_A Uncharacterized protein 75.7 2.1 7.1E-05 27.6 2.7 26 198-223 8-34 (69)
108 3vk6_A E3 ubiquitin-protein li 75.3 0.81 2.8E-05 31.8 0.7 20 195-214 34-53 (101)
109 2ct2_A Tripartite motif protei 75.2 0.54 1.8E-05 31.4 -0.2 37 198-235 15-52 (88)
110 1wfp_A Zinc finger (AN1-like) 75.2 4.1 0.00014 26.5 4.0 40 196-242 23-63 (74)
111 2ecl_A Ring-box protein 2; RNF 75.1 1.5 5.2E-05 29.0 2.1 31 213-243 40-71 (81)
112 3qt1_I DNA-directed RNA polyme 75.1 1.2 4E-05 32.9 1.6 32 193-224 19-56 (133)
113 2y43_A E3 ubiquitin-protein li 74.8 0.83 2.8E-05 31.4 0.7 38 199-241 23-62 (99)
114 2ecn_A Ring finger protein 141 74.7 1.1 3.6E-05 28.5 1.2 33 198-236 15-48 (70)
115 1weo_A Cellulose synthase, cat 73.9 2.5 8.4E-05 28.6 2.8 58 127-214 17-74 (93)
116 3na7_A HP0958; flagellar bioge 73.3 11 0.00039 30.6 7.5 19 99-117 168-186 (256)
117 1weo_A Cellulose synthase, cat 73.2 5.2 0.00018 27.0 4.2 53 35-96 14-69 (93)
118 2l0b_A E3 ubiquitin-protein li 73.1 1.1 3.7E-05 30.4 1.0 40 199-240 41-81 (91)
119 2kiz_A E3 ubiquitin-protein li 71.6 1.3 4.5E-05 28.0 1.1 42 197-240 13-55 (69)
120 3h0g_I DNA-directed RNA polyme 71.0 2.8 9.4E-05 29.8 2.7 27 198-224 4-36 (113)
121 2hu9_A MERP, mercuric transpor 70.9 2.8 9.7E-05 30.6 2.8 46 85-142 3-51 (130)
122 2jny_A Uncharacterized BCR; st 70.5 3.9 0.00013 26.1 3.1 28 197-224 9-38 (67)
123 1twf_I B12.6, DNA-directed RNA 70.3 2.6 8.9E-05 30.4 2.5 29 197-225 3-37 (122)
124 2ckl_B Ubiquitin ligase protei 69.4 1.1 3.8E-05 34.0 0.4 38 199-241 55-95 (165)
125 2ko5_A Ring finger protein Z; 69.0 1.4 4.9E-05 30.1 0.8 48 35-98 26-74 (99)
126 3qt1_I DNA-directed RNA polyme 68.8 3.2 0.00011 30.5 2.7 36 123-161 21-56 (133)
127 3knv_A TNF receptor-associated 66.3 1.2 4.1E-05 33.1 -0.0 31 199-234 32-63 (141)
128 3hct_A TNF receptor-associated 66.0 0.56 1.9E-05 33.6 -1.9 32 199-235 19-51 (118)
129 3fl2_A E3 ubiquitin-protein li 65.1 1.5 5.1E-05 31.5 0.3 31 199-234 53-84 (124)
130 2jun_A Midline-1; B-BOX, TRIM, 64.5 2.4 8.3E-05 29.1 1.3 68 150-231 17-88 (101)
131 4a0k_B E3 ubiquitin-protein li 64.1 1.4 4.8E-05 31.6 0.0 35 212-246 75-110 (117)
132 2d8v_A Zinc finger FYVE domain 63.0 2.4 8.3E-05 26.9 0.9 35 34-73 5-40 (67)
133 1dl6_A Transcription factor II 62.5 5.1 0.00017 24.7 2.4 26 198-223 11-38 (58)
134 1wff_A Riken cDNA 2810002D23 p 61.7 3.9 0.00013 27.4 1.8 41 196-242 23-64 (85)
135 3h0g_I DNA-directed RNA polyme 61.3 5.3 0.00018 28.3 2.6 33 126-161 4-36 (113)
136 2xzm_6 RPS27E; ribosome, trans 61.0 4.7 0.00016 26.7 2.1 31 127-163 33-63 (81)
137 1twf_I B12.6, DNA-directed RNA 60.7 3.7 0.00013 29.6 1.8 34 125-161 3-36 (122)
138 3l11_A E3 ubiquitin-protein li 60.4 4 0.00014 28.7 1.9 32 199-235 16-48 (115)
139 3m7n_A Putative uncharacterize 60.3 4.6 0.00016 31.2 2.3 23 199-223 141-164 (179)
140 3dpl_R Ring-box protein 1; ubi 60.1 3.6 0.00012 28.8 1.6 36 212-247 64-100 (106)
141 1twf_L ABC10-alpha, DNA-direct 59.0 2.7 9.1E-05 27.2 0.6 23 199-222 29-52 (70)
142 3iz6_X 40S ribosomal protein S 58.3 6.2 0.00021 26.4 2.3 35 127-167 37-71 (86)
143 1wfk_A Zinc finger, FYVE domai 57.6 6.9 0.00023 26.4 2.5 33 197-231 8-42 (88)
144 3hcs_A TNF receptor-associated 57.5 2.1 7.3E-05 32.5 -0.0 31 199-234 19-50 (170)
145 1wii_A Hypothetical UPF0222 pr 57.4 6.4 0.00022 26.4 2.3 28 197-224 22-57 (85)
146 2kpi_A Uncharacterized protein 54.7 10 0.00035 23.2 2.8 22 197-220 9-30 (56)
147 2o35_A Hypothetical protein DU 53.6 8 0.00027 26.6 2.3 17 62-78 42-58 (105)
148 1z60_A TFIIH basal transcripti 53.5 3.9 0.00013 25.4 0.7 36 128-173 17-52 (59)
149 1vq8_Z 50S ribosomal protein L 53.0 8.4 0.00029 25.7 2.3 30 125-161 26-55 (83)
150 2yw8_A RUN and FYVE domain-con 52.7 4.7 0.00016 26.8 1.0 36 35-70 17-52 (82)
151 4ayb_P DNA-directed RNA polyme 51.4 7.5 0.00025 22.8 1.6 27 133-162 8-34 (48)
152 1gh9_A 8.3 kDa protein (gene M 51.2 8.4 0.00029 24.9 2.0 23 200-223 6-28 (71)
153 3u5c_f 40S ribosomal protein S 50.9 6.9 0.00024 29.3 1.9 33 126-163 118-150 (152)
154 3u5c_b RP61, YS20, 40S ribosom 50.6 5.2 0.00018 26.5 1.0 31 127-163 35-65 (82)
155 1qxf_A GR2, 30S ribosomal prot 50.0 12 0.00042 23.6 2.6 31 127-163 8-38 (66)
156 1z2q_A LM5-1; membrane protein 49.8 5.9 0.0002 26.4 1.2 36 35-70 19-54 (84)
157 3u5c_f 40S ribosomal protein S 48.8 8.5 0.00029 28.8 2.1 29 198-226 118-150 (152)
158 3fyb_A Protein of unknown func 46.9 8.6 0.00029 26.4 1.6 17 62-78 41-57 (104)
159 1dvp_A HRS, hepatocyte growth 46.1 11 0.00038 29.9 2.5 33 199-233 162-196 (220)
160 3j20_W 30S ribosomal protein S 43.8 18 0.00061 22.7 2.6 31 127-163 16-46 (63)
161 1k81_A EIF-2-beta, probable tr 43.8 18 0.00061 19.8 2.3 24 200-223 2-29 (36)
162 1x4u_A Zinc finger, FYVE domai 43.2 7.9 0.00027 25.7 1.0 36 35-70 12-47 (84)
163 2xzm_9 RPS31E; ribosome, trans 42.5 12 0.00042 29.1 2.1 28 198-226 113-143 (189)
164 3t7l_A Zinc finger FYVE domain 42.3 6.8 0.00023 26.5 0.6 35 37-71 20-54 (90)
165 1x4w_A Hypothetical protein FL 42.1 12 0.0004 23.9 1.6 40 197-242 14-56 (67)
166 1joc_A EEA1, early endosomal a 41.8 6.9 0.00024 28.3 0.6 35 37-71 69-103 (125)
167 1vfy_A Phosphatidylinositol-3- 41.8 7.6 0.00026 25.0 0.7 33 38-70 12-44 (73)
168 2vpb_A Hpygo1, pygopus homolog 41.5 15 0.00052 23.1 2.1 39 34-72 5-44 (65)
169 2kdx_A HYPA, hydrogenase/ureas 39.9 35 0.0012 24.1 4.1 46 105-159 42-98 (119)
170 2zet_C Melanophilin; complex, 39.8 5.5 0.00019 29.9 -0.2 33 36-68 67-100 (153)
171 2y1n_A E3 ubiquitin-protein li 39.3 21 0.00072 31.1 3.3 40 197-241 331-372 (389)
172 3h0g_L DNA-directed RNA polyme 39.0 10 0.00035 23.8 1.0 24 199-223 22-46 (63)
173 1fre_A Nuclear factor XNF7; zi 37.8 21 0.00072 19.8 2.2 26 149-174 12-38 (42)
174 2yww_A Aspartate carbamoyltran 37.6 16 0.00056 27.1 2.0 32 126-161 105-143 (149)
175 2yvr_A Transcription intermedi 36.5 11 0.00038 21.9 0.8 26 149-174 16-41 (50)
176 2akl_A PHNA-like protein PA012 35.9 21 0.00071 25.9 2.3 26 198-224 27-54 (138)
177 2xzf_A Formamidopyrimidine-DNA 35.6 18 0.00061 29.8 2.2 24 199-222 243-269 (271)
178 3u6p_A Formamidopyrimidine-DNA 34.9 17 0.00058 30.0 2.0 24 199-222 246-272 (273)
179 1joc_A EEA1, early endosomal a 34.7 38 0.0013 24.2 3.6 35 125-168 68-102 (125)
180 1ee8_A MUTM (FPG) protein; bet 34.1 20 0.0007 29.4 2.3 22 199-220 236-259 (266)
181 1k82_A Formamidopyrimidine-DNA 33.9 20 0.00067 29.5 2.2 24 199-222 241-267 (268)
182 1k3x_A Endonuclease VIII; hydr 33.4 20 0.00069 29.3 2.2 24 199-222 235-261 (262)
183 1wfe_A Riken cDNA 2310008M20 p 32.8 34 0.0012 22.8 2.9 33 126-168 25-57 (86)
184 2be7_D Aspartate carbamoyltran 31.9 21 0.00071 26.7 1.8 34 125-161 104-144 (153)
185 3v2d_5 50S ribosomal protein L 31.8 28 0.00096 21.5 2.1 28 120-159 24-51 (60)
186 4fyy_B Aspartate carbamoyltran 30.3 27 0.00094 26.1 2.2 37 125-161 105-145 (153)
187 1pg5_B Aspartate carbamoyltran 29.8 31 0.0011 26.2 2.4 33 125-161 113-153 (168)
188 2did_A Tripartite motif protei 29.1 31 0.0011 20.2 2.0 33 198-237 8-42 (53)
189 1wep_A PHF8; structural genomi 29.1 31 0.0011 22.4 2.1 58 34-97 9-66 (79)
190 2a20_A Regulating synaptic mem 29.1 16 0.00054 22.5 0.6 35 198-234 9-45 (62)
191 1x4v_A Hypothetical protein LO 28.6 28 0.00097 21.8 1.8 40 126-177 12-51 (63)
192 2zjr_Z 50S ribosomal protein L 28.1 33 0.0011 21.2 2.0 28 121-160 25-52 (60)
193 1y02_A CARP2, FYVE-ring finger 27.2 15 0.00052 26.3 0.3 37 36-72 18-54 (120)
194 2d8u_A Ubiquitin ligase TRIM63 26.0 36 0.0012 20.7 2.0 34 198-238 8-44 (64)
195 2dja_A Midline-2; tripartite m 26.0 48 0.0016 21.5 2.7 37 199-242 19-58 (84)
196 3cc2_Z 50S ribosomal protein L 25.7 39 0.0013 23.9 2.2 27 197-223 59-86 (116)
197 3vhs_A ATPase wrnip1; zinc fin 25.1 11 0.00036 18.9 -0.6 22 81-104 4-25 (29)
198 1zbd_B Rabphilin-3A; G protein 24.7 65 0.0022 23.4 3.4 37 196-233 53-91 (134)
199 1vk6_A NADH pyrophosphatase; 1 24.4 59 0.002 26.6 3.5 27 197-223 106-133 (269)
200 3j21_i 50S ribosomal protein L 24.4 39 0.0013 22.4 1.9 27 198-224 35-63 (83)
201 1nui_A DNA primase/helicase; z 24.0 45 0.0015 26.8 2.7 22 199-223 15-41 (255)
202 3a43_A HYPD, hydrogenase nicke 24.0 79 0.0027 23.0 3.8 37 104-142 39-84 (139)
203 2lbm_A Transcriptional regulat 23.8 2.2E+02 0.0074 20.8 6.6 54 34-94 60-117 (142)
204 3mjh_B Early endosome antigen 23.7 17 0.00058 19.8 0.0 16 36-51 4-19 (34)
205 1we9_A PHD finger family prote 23.7 20 0.0007 22.1 0.4 36 35-70 4-39 (64)
206 3ddt_A E3 ubiquitin-protein li 23.6 24 0.00082 20.2 0.7 26 149-174 16-42 (48)
207 3j21_g 50S ribosomal protein L 23.1 19 0.00066 21.5 0.2 12 196-207 12-23 (51)
208 3lqh_A Histone-lysine N-methyl 22.5 14 0.00049 28.5 -0.6 75 38-115 3-83 (183)
209 4a17_Y RPL37A, 60S ribosomal p 22.5 49 0.0017 22.9 2.1 27 198-224 36-64 (103)
210 2csv_A Tripartite motif protei 22.0 25 0.00087 22.2 0.6 27 149-175 27-53 (72)
211 3jyw_9 60S ribosomal protein L 22.0 33 0.0011 22.1 1.2 26 198-223 26-52 (72)
212 2i5o_A DNA polymerase ETA; zin 21.9 38 0.0013 18.9 1.2 15 196-210 7-21 (39)
213 1odh_A MGCM1; transcription fa 21.7 39 0.0013 25.3 1.7 20 198-223 110-131 (174)
214 3zyq_A Hepatocyte growth facto 21.6 23 0.00078 28.3 0.4 34 38-71 165-198 (226)
215 3a1b_A DNA (cytosine-5)-methyl 21.4 40 0.0014 25.3 1.7 36 34-73 76-113 (159)
216 1lv3_A Hypothetical protein YA 21.0 39 0.0013 21.5 1.3 16 196-211 7-22 (68)
217 2xb1_A Pygopus homolog 2, B-ce 20.6 27 0.00093 24.2 0.6 55 36-93 2-60 (105)
218 2fiy_A Protein FDHE homolog; F 20.3 54 0.0018 27.5 2.5 33 199-231 183-231 (309)
219 2f9y_B Acetyl-coenzyme A carbo 20.3 19 0.00066 30.2 -0.3 31 195-225 21-54 (304)
220 2e72_A POGO transposable eleme 20.2 40 0.0014 19.8 1.1 14 196-209 10-23 (49)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.73 E-value=4.4e-18 Score=121.66 Aligned_cols=88 Identities=19% Similarity=0.507 Sum_probs=77.0
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCC--CCHHHHhhcCChhHHHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQF--LDPFSCKLMIPSNLFSKW 112 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~--i~~~~i~~~l~~~~~~~~ 112 (268)
...++|+||++++...+.+ .+.+|+|.||.+||+.|++.+|.+|...++.||.++|+.. ++++.++.+|+++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 4578999999998655433 3458999999999999999999886667899999999999 999999999999999999
Q ss_pred HHHHHhhhhcC
Q 043604 113 CDVLFEDYVLG 123 (268)
Q Consensus 113 ~~~~~~~~~~~ 123 (268)
.+++++.++..
T Consensus 82 ~~~~~~~~v~~ 92 (94)
T 1wim_A 82 KKLQFERSGPS 92 (94)
T ss_dssp HHHHHHSSCSS
T ss_pred HHHHHHhhhcc
Confidence 99999887754
No 2
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.67 E-value=9.5e-18 Score=108.40 Aligned_cols=42 Identities=21% Similarity=0.553 Sum_probs=38.7
Q ss_pred hCCcccCCCCCceeeecCCcCeEEec---CCc-ccccccccccCCC
Q 043604 195 RMHWARCPACGSCVERKEGCRVMYCS---CHS-VTYSRAKHISLRK 236 (268)
Q Consensus 195 ~~~~k~CP~C~~~iek~~GCnhm~C~---C~~-FC~~C~~~~~~~~ 236 (268)
..++|+||+|+++|||++|||||+|+ |++ |||+|+++|+.++
T Consensus 3 ~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 3 AANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred cccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 35789999999999999999999997 999 9999999998764
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.42 E-value=4.3e-15 Score=103.84 Aligned_cols=74 Identities=28% Similarity=0.567 Sum_probs=63.6
Q ss_pred ChhHHHHHHHHHHhhhhcC-CCcccCCccccCceeeeccccccCCcCeeeCccccccccccccccc---CCCCCcchhhc
Q 043604 105 PSNLFSKWCDVLFEDYVLG-FERSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCFQCKLAW---HAGYRCEESGN 180 (268)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~-~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~tC~~~~~ 180 (268)
+++++++|++++.+.+|.. ++++||| +|+.++..... ...+.|+.|+..||+.|+.+| |.|.+|+++++
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~-----~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE-----QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS-----CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC-----CCceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 4567889999999999975 7789999 99999877653 367999999999999999999 99999999998
Q ss_pred ccchh
Q 043604 181 LRDWN 185 (268)
Q Consensus 181 ~~~~~ 185 (268)
|..++
T Consensus 76 w~~~n 80 (86)
T 2ct7_A 76 WKRMN 80 (86)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 86543
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-14 Score=100.11 Aligned_cols=70 Identities=24% Similarity=0.516 Sum_probs=62.4
Q ss_pred cCChhHHHHHHHHHHhhhhcCCCcccCCccccCceeeeccccccCCcCeeeCc-----ccccccccccccccCCCCCcch
Q 043604 103 MIPSNLFSKWCDVLFEDYVLGFERSYCPNRNCMALVVNGCEINYGTLKKARCP-----NCTQWFCFQCKLAWHAGYRCEE 177 (268)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~tC~~ 177 (268)
+|+++++++|++++++.+|...+++|||.|+|+.++..+.. ...+.|+ .|++.||+.|+.+||. .+|+.
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~~-----~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPD-----QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCSC-----TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECCC-----CCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 68889999999999999998766999999999999987653 3679998 9999999999999999 99986
Q ss_pred h
Q 043604 178 S 178 (268)
Q Consensus 178 ~ 178 (268)
.
T Consensus 76 ~ 76 (80)
T 2jmo_A 76 V 76 (80)
T ss_dssp C
T ss_pred c
Confidence 3
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=2e-11 Score=92.21 Aligned_cols=119 Identities=23% Similarity=0.528 Sum_probs=80.0
Q ss_pred CCcccccccccCCcCC---cCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhcCChhHHHH
Q 043604 35 NGIFTCEICIEPISAN---DKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLMIPSNLFSK 111 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~ 111 (268)
...++|+||++.+..+ ......++|||.||.+|+..|+.. ...||. |+..+....+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l~~l~------- 67 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHPIY------- 67 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--------CSBCTT--TCCBCTTTCEEECB-------
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--------CCCCCC--CCCcCccccccccc-------
Confidence 4578999999988543 122246899999999999999853 238998 99988766554431
Q ss_pred HHHHHHhhhhcCCCcccCCccccCceeeeccccccCCcCeeeCcccccccccccccccCCCCCcchhhcccchhhHHHHH
Q 043604 112 WCDVLFEDYVLGFERSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCFQCKLAWHAGYRCEESGNLRDWNDIAFGK 191 (268)
Q Consensus 112 ~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~tC~~~~~~~~~~~~~~~~ 191 (268)
...+...|| -|...+...... ........|+..||..|...|..
T Consensus 68 ----------i~~~~~~C~--iC~~~~~~~~~~----~~~~~~~~CgH~fc~~Ci~~~~~-------------------- 111 (133)
T 4ap4_A 68 ----------IGSGTVSCP--ICMDGYSEIVQN----GRLIVSTECGHVFCSQCLRDSLK-------------------- 111 (133)
T ss_dssp ----------CSSSSCBCT--TTCCBHHHHHHT----TCCEEEETTSBEEEHHHHHHHHH--------------------
T ss_pred ----------cCCCCCCCC--CCCCcccccccc----CcceEeCCCCChhhHHHHHHHHH--------------------
Confidence 123456787 677665432111 12223447999999998765431
Q ss_pred HHHhCCcccCCCCCceeeec
Q 043604 192 LVERMHWARCPACGSCVERK 211 (268)
Q Consensus 192 ~~~~~~~k~CP~C~~~iek~ 211 (268)
. .+.||.|+..|.++
T Consensus 112 ---~--~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 ---N--ANTCPTCRKKINHK 126 (133)
T ss_dssp ---H--CSBCTTTCCBCCGG
T ss_pred ---c--CCCCCCCCCcCChh
Confidence 1 26899999998865
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.94 E-value=3.1e-10 Score=89.52 Aligned_cols=102 Identities=24% Similarity=0.514 Sum_probs=67.6
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhcCChhHHHHHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLMIPSNLFSKWCD 114 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~~~~ 114 (268)
...+.|+||++.+..+ +.++|||.||..|+..++.... ..||. |+..+....+. ....+++
T Consensus 16 ~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~---~~~~~~~--- 76 (170)
T 3hcs_A 16 ESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLF---PDNFAKR--- 76 (170)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCE---ECHHHHH---
T ss_pred CCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCC-------CCCCC--CccCcchhhhh---hhHHHHH---
Confidence 4468999999988543 3579999999999999997542 38998 99888775432 2222221
Q ss_pred HHHhhhhcCCCcccCCccccCceeeeccccccC---CcCeeeCccccccc
Q 043604 115 VLFEDYVLGFERSYCPNRNCMALVVNGCEINYG---TLKKARCPNCTQWF 161 (268)
Q Consensus 115 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~~~~---~~~~~~C~~C~~~~ 161 (268)
.+. .-.++||+.+|+..+......... ....+.|+.|+..+
T Consensus 77 ~i~------~l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~ 120 (170)
T 3hcs_A 77 EIL------SLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF 120 (170)
T ss_dssp HHH------TSEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE
T ss_pred HHh------hcccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH
Confidence 111 235899999999988876543211 12445666555544
No 7
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=7.1e-09 Score=72.30 Aligned_cols=63 Identities=21% Similarity=0.565 Sum_probs=48.2
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhc
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLM 103 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 103 (268)
....++|+||++.+...+.....++|+|.||..|+..|+... ...+.||. |+..+....+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTT--TCCCBCCSSTTTS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCC--CCCcccchhHHHH
Confidence 345688999999986544323578999999999999999764 23588998 9988877655543
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.65 E-value=1.7e-08 Score=63.85 Aligned_cols=52 Identities=23% Similarity=0.532 Sum_probs=40.8
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
....+|+||++++...+.....++|+|.||.+|+..|+... ..||. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCCC--CCCcCC
Confidence 34678999999985543334678999999999999998764 57998 887653
No 9
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.64 E-value=3e-08 Score=72.99 Aligned_cols=83 Identities=22% Similarity=0.452 Sum_probs=59.0
Q ss_pred cccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhcCChhHHHHHHHHH
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLMIPSNLFSKWCDVL 116 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~~~~~~ 116 (268)
.+.|+||++.+..+ +.++|||.||..|+..|+... ...||. |+..+....+...+ ..+ ...+
T Consensus 23 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~~~~~~-~~l----~~~i 84 (116)
T 1rmd_A 23 SISCQICEHILADP----VETSCKHLFCRICILRCLKVM-------GSYCPS--CRYPCFPTDLESPV-KSF----LNIL 84 (116)
T ss_dssp HTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCBCCC-HHH----HHHH
T ss_pred CCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHC-------cCcCCC--CCCCCCHhhccccH-HHH----HHHH
Confidence 57899999988543 357999999999999999763 257998 99998886654321 111 1111
Q ss_pred HhhhhcCCCcccCCccccCceeeeccc
Q 043604 117 FEDYVLGFERSYCPNRNCMALVVNGCE 143 (268)
Q Consensus 117 ~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 143 (268)
. .-.++||+.+|+..+.....
T Consensus 85 ~------~l~v~C~~~gC~~~~~~~~~ 105 (116)
T 1rmd_A 85 N------SLMVKCPAQDCNEEVSLEKY 105 (116)
T ss_dssp H------HCEEECCSTTCCCEEEHHHH
T ss_pred H------HhcCCCCCCCCcchhhHhHH
Confidence 1 12478999999988875543
No 10
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=2.8e-08 Score=72.57 Aligned_cols=70 Identities=27% Similarity=0.570 Sum_probs=50.3
Q ss_pred cccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhcCC-hhHHHHHHHH
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLMIP-SNLFSKWCDV 115 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~-~~~~~~~~~~ 115 (268)
.+.|+||++.+..+ ..++|||.||..|+..|+... ...+.||. |+..+....+..... .++.+.+...
T Consensus 21 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 21 ILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQK-----KGPSQCPL--CKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSS-----SSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred CCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhC-----CCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 56899999988543 357999999999999998743 23478998 999888776654332 3455555544
Q ss_pred HH
Q 043604 116 LF 117 (268)
Q Consensus 116 ~~ 117 (268)
+.
T Consensus 90 ~~ 91 (112)
T 1jm7_A 90 IC 91 (112)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 11
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=3.6e-08 Score=68.05 Aligned_cols=59 Identities=27% Similarity=0.593 Sum_probs=46.5
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSC 100 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i 100 (268)
....+.|+||++.+... ..++|+|.||..|+..|+..+... ...+.||. |+..+....+
T Consensus 16 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~ 74 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLD--KGESSCPV--CRISYQPENI 74 (85)
T ss_dssp CCCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHT--TSCCCCTT--TCCSSCSSSC
T ss_pred ccCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcC--CCCCcCCC--CCCccCHHhc
Confidence 34568999999998543 357999999999999999887655 23689999 9988876544
No 12
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=1.6e-08 Score=66.44 Aligned_cols=59 Identities=17% Similarity=0.419 Sum_probs=43.2
Q ss_pred ccccccccc-CCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhcC
Q 043604 37 IFTCEICIE-PISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLMI 104 (268)
Q Consensus 37 ~~~C~IC~~-~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l 104 (268)
..+|+||++ .+..+......++|||.||.+|+..++.. ....||. |+..+....++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-------GAGNCPE--CGTPLRKSNFRVQL 62 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-------TSSSCTT--TCCCCSSCCCEEEC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-------CCCcCCC--CCCccccccceeec
Confidence 568999999 55443322135799999999999999752 1468998 99988877665543
No 13
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.55 E-value=5.4e-08 Score=71.84 Aligned_cols=85 Identities=24% Similarity=0.465 Sum_probs=60.0
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhcCChhHHHHHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLMIPSNLFSKWCD 114 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~~~~ 114 (268)
...+.|+||++.+..+ +.++|||.||..|+..|+...- ..||. |+..+....+. ....+++
T Consensus 16 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~-------~~CP~--Cr~~~~~~~~~---~~~~l~~--- 76 (118)
T 3hct_A 16 ESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAG-------HKCPV--DNEILLENQLF---PDNFAKR--- 76 (118)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHC-------SBCTT--TCCBCCGGGCE---ECHHHHH---
T ss_pred CCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCC-------CCCCC--CCCCcCHHhcc---cCHHHHH---
Confidence 4468999999988543 3579999999999999997542 27998 99888765432 2222221
Q ss_pred HHHhhhhcCCCcccCCccccCceeeecccc
Q 043604 115 VLFEDYVLGFERSYCPNRNCMALVVNGCEI 144 (268)
Q Consensus 115 ~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~~ 144 (268)
. +. .-.++||+.+|+..+......
T Consensus 77 ~-i~-----~l~v~C~n~gC~~~~~~~~l~ 100 (118)
T 3hct_A 77 E-IL-----SLMVKCPNEGCLHKMELRHLE 100 (118)
T ss_dssp H-HH-----TSEEECSSTTCCCEEEGGGSG
T ss_pred H-Hc-----cceeECCCCCCCCEEeeHHHH
Confidence 1 11 235899999999988876654
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.52 E-value=4.7e-08 Score=67.47 Aligned_cols=59 Identities=29% Similarity=0.536 Sum_probs=45.9
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHh
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCK 101 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 101 (268)
...+.|+||++.+..+ ..++|+|.||..|+..|+...... ...+.||. |+..+..+.+.
T Consensus 17 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNT--DGKGNCPV--CRVPYPFGNLK 75 (85)
T ss_dssp CTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCT--TSCBCCTT--TCCCCCTTCCE
T ss_pred ccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCC--CCCCCCCC--CCCcCCHHhCC
Confidence 4568999999998543 357899999999999999876522 34689998 99888765443
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.51 E-value=8.6e-09 Score=70.36 Aligned_cols=60 Identities=25% Similarity=0.466 Sum_probs=45.6
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHh
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCK 101 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 101 (268)
...++|+||++.+..+ ..++|||.||.+|+..|+...... ......||. |+..+....+.
T Consensus 10 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~-~~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTS-MGGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSS-CCCCCCCSS--SCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccC-CCCCCcCCC--CCCcCCHhhCC
Confidence 4578999999998543 357999999999999998754333 234689999 99888765543
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=2.2e-08 Score=67.18 Aligned_cols=55 Identities=24% Similarity=0.560 Sum_probs=42.3
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFS 99 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 99 (268)
....+.|+||++.+... ..++|+|.||..|+..|+.. ......||. |+..+..++
T Consensus 17 ~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~--Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGET-----SCGFFKCPL--CKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSS-----SCSCCCCSS--SCCCCCCCC
T ss_pred CccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHc-----CCCCCCCCC--CCCcCCccc
Confidence 34568999999988532 35699999999999999861 234678999 998876543
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=5.1e-08 Score=64.13 Aligned_cols=52 Identities=21% Similarity=0.655 Sum_probs=41.0
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFS 99 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 99 (268)
...+.|+||++.+..+ ..++|||.||..|+..|+. .....||. |+..+..++
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~-------~~~~~CP~--Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLS-------SSSPKCTA--CQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHT-------TSSCCCTT--TCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHH-------hCcCCCCC--CCcCCChhh
Confidence 4578999999988543 3479999999999999985 12467998 998877654
No 18
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.50 E-value=1.3e-07 Score=62.75 Aligned_cols=53 Identities=21% Similarity=0.573 Sum_probs=40.9
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
......|.||++.+...+.. ..++|+|.||..|+..|+... ..||. |+..|..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITN--------KKCPI--CRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCE-EECTTSCEEEHHHHHHHHHHC--------SBCTT--TCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcE-EEeCCCCHHHHHHHHHHHHcC--------CCCcC--cCccccC
Confidence 34567899999988654443 468999999999999998752 25998 9877653
No 19
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=6.4e-08 Score=64.83 Aligned_cols=56 Identities=21% Similarity=0.462 Sum_probs=43.0
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhc
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLM 103 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 103 (268)
...+.|+||++.+... + .+.+|+|.||..|+..|+.. ...||. |+..+...++...
T Consensus 13 ~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--T-TITECLHTFCKSCIVRHFYY--------SNRCPK--CNIVVHQTQPLSG 68 (72)
T ss_dssp CGGGSCTTTSSCCSSC--E-ECSSSCCEECHHHHHHHHHH--------CSSCTT--TCCCCCSSCSCCC
T ss_pred CCCCCCCCCChHHHCc--C-EECCCCCHHHHHHHHHHHHc--------CCcCCC--cCcccCccccccc
Confidence 4468899999988543 2 23599999999999999965 257998 9988876655443
No 20
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.46 E-value=3.6e-08 Score=64.29 Aligned_cols=57 Identities=21% Similarity=0.613 Sum_probs=43.1
Q ss_pred CcccccccccCCcCC---cCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhh
Q 043604 36 GIFTCEICIEPISAN---DKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKL 102 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 102 (268)
+..+|+||++.+... ......++|+|.||.+|+..|+.. ...||. |+..+...++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTT--TCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCC--CCccCCccceee
Confidence 357899999987542 122246899999999999999975 247998 999887766544
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.45 E-value=2.9e-08 Score=66.18 Aligned_cols=59 Identities=22% Similarity=0.614 Sum_probs=44.2
Q ss_pred CCCcccccccccCCcCC---cCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhh
Q 043604 34 TNGIFTCEICIEPISAN---DKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKL 102 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 102 (268)
.....+|+||++.+... ......++|+|.||.+|+..|+... ..||. |+..+....+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHP 68 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--------SBCTT--TCCBCCCCSCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--------CCCCC--CCCccChhheee
Confidence 34578899999987542 1222478999999999999998642 47998 998887665543
No 22
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2.2e-07 Score=60.41 Aligned_cols=46 Identities=26% Similarity=0.605 Sum_probs=35.7
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCC
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPG 88 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 88 (268)
....+.|+||++.+..+ +.++|||.||..|+..|+... .....||.
T Consensus 17 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETS-----CGFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHC-----SSCCCCSC
T ss_pred CccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcC-----CCCCcCcC
Confidence 34568999999988543 357999999999999999851 23467886
No 23
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.40 E-value=1.7e-07 Score=63.73 Aligned_cols=57 Identities=19% Similarity=0.443 Sum_probs=40.7
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSC 100 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i 100 (268)
....+|+||++.+...+..+..++|||.||..|+..++.. ....||. |+..+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCTT--TCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCCC--CCCccCCCch
Confidence 4568899999988543332122359999999999987632 2478999 9988776443
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.38 E-value=2.9e-07 Score=65.76 Aligned_cols=55 Identities=25% Similarity=0.626 Sum_probs=44.1
Q ss_pred CcccccccccCCcCCcCcccc-CCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhc
Q 043604 36 GIFTCEICIEPISANDKFRNK-DLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLM 103 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~~~~~~-~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 103 (268)
..+.|+||++.+..+ +. ++|||.||..|+..|+... ...||. |+..+....+...
T Consensus 21 ~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQ-------RAQCPH--CRAPLQLRELVNC 76 (100)
T ss_dssp HHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHT-------CSBCTT--TCCBCCGGGCEEC
T ss_pred CCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHC-------cCCCCC--CCCcCCHHHhHhh
Confidence 467899999998542 34 8999999999999999754 168999 9999987766543
No 25
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.36 E-value=2e-08 Score=76.47 Aligned_cols=88 Identities=17% Similarity=0.335 Sum_probs=58.2
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhcC------Chh
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLMI------PSN 107 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l------~~~ 107 (268)
....+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+..+....++ ...
T Consensus 28 l~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~ 94 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSS-------GPQNCAA--CVHEGIYEEGISILESSSAFPDN 94 (141)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGG-------SCEECHH--HHHTTCCCTTTTEECGGGCEECH
T ss_pred CCcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhc-------CCCCCCC--CCCcccccccccccchhhhcccH
Confidence 34578999999988543 35799999999999999841 2368998 88765443322222 222
Q ss_pred HHHHHHHHHHhhhhcCCCcccCCccccCceeeeccc
Q 043604 108 LFSKWCDVLFEDYVLGFERSYCPNRNCMALVVNGCE 143 (268)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 143 (268)
.+++ .+. .-.++||+.+|+..+.....
T Consensus 95 ~~~~----~i~-----~L~v~Cpn~GC~~~~~l~~l 121 (141)
T 3knv_A 95 AARR----EVE-----SLPAVCPSDGCTWKGTLKEY 121 (141)
T ss_dssp HHHH----HHH-----TSEEECCSTTCCCEEEHHHH
T ss_pred HHHH----HHc-----ccccccCCCCCCCEeEHHHH
Confidence 2221 111 23589999999988876543
No 26
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.3e-07 Score=62.35 Aligned_cols=52 Identities=27% Similarity=0.621 Sum_probs=40.6
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
......|.||++++.....+ ..++|+|.||..|+..|+... ..||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~~--------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVR--------KVCPL--CNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCE-EEETTTEEEEHHHHHHHHHHC--------SBCTT--TCCBCS
T ss_pred CCCCCCCcCCCcccCCCCcE-EEcCCCCEecHHHHHHHHHcC--------CcCCC--cCcccc
Confidence 34567899999998665544 356899999999999999652 27998 987664
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.36 E-value=2.1e-07 Score=63.18 Aligned_cols=66 Identities=20% Similarity=0.410 Sum_probs=46.5
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHh-hcCChhHHHHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCK-LMIPSNLFSKWC 113 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~-~~l~~~~~~~~~ 113 (268)
...+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+....+. ...-..+++.|.
T Consensus 6 ~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~-------~~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDA-------GHKTCPK--SQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTT-------TCCBCTT--TCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHH-------CcCCCCC--CcCCCChhhCccCHHHHHHHHHHH
Confidence 4578999999988543 35689999999999999952 1467998 99888765433 222234444444
No 28
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=7.1e-08 Score=64.40 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=43.4
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhhc
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKLM 103 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 103 (268)
.....|.||++.+... +.++|+|.||..|+..|+.. ...||. |+..+....+...
T Consensus 13 ~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWL--------GKRCAL--CRQEIPEDFLDSG 67 (71)
T ss_dssp SSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTC--------SSBCSS--SCCBCCHHHHSCS
T ss_pred CCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHC--------CCcCcC--cCchhCHhhccCC
Confidence 4567899999988432 35689999999999998742 158999 9999998877653
No 29
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.8e-07 Score=61.86 Aligned_cols=53 Identities=25% Similarity=0.726 Sum_probs=40.1
Q ss_pred CCCcccccccccCCcCC---cCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 34 TNGIFTCEICIEPISAN---DKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
......|+||++.+... ......++|+|.||.+|+..|+.. ...||. |+..|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPT--CRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTT--TCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCC--CCCccC
Confidence 34578899999987542 122246899999999999999975 247998 987764
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=3.6e-07 Score=62.57 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=39.8
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
....+.|+||++.+..+ +.++|+|.||..|+..|+.. ...||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRA--------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHH--------CSBCSS--SCCBCC
T ss_pred CCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHC--------CCcCCC--cCcccc
Confidence 34568999999998542 35899999999999999964 357999 998876
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.32 E-value=1.4e-07 Score=66.20 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=39.5
Q ss_pred CCCcccccccccCCcCCcCccccCC-CCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCC
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDL-CSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFL 95 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i 95 (268)
....+.|+||++.+..+ +.++ |||.||..|+..|+... ....||. |+..+
T Consensus 10 ~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHC------TTCCCTT--TCCSS
T ss_pred CCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhc------CCCcCcC--CCCcC
Confidence 34578999999988543 3567 99999999999998742 2368999 99876
No 32
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.31 E-value=6.5e-08 Score=65.82 Aligned_cols=57 Identities=23% Similarity=0.550 Sum_probs=43.6
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHh
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCK 101 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 101 (268)
.....+|.||++.+...+.. ..++|+|.||..|+..|+... ..||. |+..+....+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESV-RQLPCNHLFHDSCIVPWLEQH--------DSCPV--CRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCE-EECTTSCEEETTTTHHHHTTT--------CSCTT--TCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCE-EEeCCCCeecHHHHHHHHHcC--------CcCcC--cCCccCCcccC
Confidence 34567999999998665443 467999999999999998421 47998 99887765443
No 33
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.31 E-value=2.8e-07 Score=58.09 Aligned_cols=50 Identities=18% Similarity=0.560 Sum_probs=38.2
Q ss_pred CcccccccccCCcCCcCccccCC-CCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 36 GIFTCEICIEPISANDKFRNKDL-CSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
...+|+||++++...+.. ..++ |+|.||.+|+..|+.. ...||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~-~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEA-RFLPRCGHGFHAECVDMWLGS--------HSTCPL--CRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCC-EECSSSCCEECTTHHHHTTTT--------CCSCSS--SCCCSC
T ss_pred CCCcCccCCccccCCCce-EECCCCCCcccHHHHHHHHHc--------CCcCcC--CCCEeE
Confidence 456899999999765544 3454 9999999999999742 246998 987654
No 34
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.28 E-value=3.4e-07 Score=61.57 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=39.0
Q ss_pred CCCcccccccccCCcCCcCccccCC-CCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCC
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDL-CSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFL 95 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i 95 (268)
....+.|+||++.+..+ +.++ |+|.||..|+..|+... ....||. |+..+
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~--Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLES------DEHTCPT--CHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHS------SSSCCSS--SCCSS
T ss_pred CCCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhc------CCCcCCC--CCCcC
Confidence 34568999999988543 3577 99999999999999753 1468999 98753
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.5e-07 Score=58.27 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=34.9
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCC
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPG 88 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~ 88 (268)
......|+||++.+... ..++|+|.||..|+..|+... .....||.
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~ 57 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDL-----ERDFPCPV 57 (58)
T ss_dssp SCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSS-----CCSCCCSC
T ss_pred cccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhc-----CCCCCCCC
Confidence 34568899999998543 357999999999999997531 23467886
No 36
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=2.2e-07 Score=62.63 Aligned_cols=52 Identities=23% Similarity=0.585 Sum_probs=40.9
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
....+|.||++++...+.+ ..++|+|.||.+|+..|+... ..||. |+..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~--------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKAN--------RTCPI--CRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEE-EEETTTEEEETTHHHHHHHHC--------SSCTT--TCCCCCC
T ss_pred CCCCCCeECCcccCCCCeE-EEECCCCHhHHHHHHHHHHcC--------CcCcC--cCCcCCC
Confidence 4567899999998765544 467899999999999998642 37998 9877653
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.24 E-value=3.6e-07 Score=65.11 Aligned_cols=52 Identities=29% Similarity=0.697 Sum_probs=40.3
Q ss_pred CcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHH
Q 043604 36 GIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSC 100 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i 100 (268)
..+.|+||++.+..+ . ...+|||.||..|+..|+.. ...||. |+..+....+
T Consensus 21 ~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~~~l 72 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--M-IIPQCSHNYCSLCIRKFLSY--------KTQCPT--CCVTVTEPDL 72 (99)
T ss_dssp HHTBCTTTCSBCSSE--E-ECTTTCCEEEHHHHHHHHTT--------CCBCTT--TCCBCCGGGC
T ss_pred CCCCcccCChhhCCc--C-EECCCCCHhhHHHHHHHHHC--------CCCCCC--CCCcCChhhC
Confidence 367899999998543 2 23489999999999999862 258998 9998887543
No 38
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.20 E-value=2.5e-07 Score=58.70 Aligned_cols=47 Identities=19% Similarity=0.544 Sum_probs=36.8
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
+...+.|+||++.+..+ ..++|+|.||..|+.. ..+.||. |+..+..
T Consensus 3 e~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----------~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----------SGMQCPI--CQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----------SSSSCSS--CCSSSSC
T ss_pred cccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----------CCCCCCc--CCcEeec
Confidence 34578899999988643 4689999999999876 2478998 9876653
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.19 E-value=1.2e-06 Score=67.32 Aligned_cols=50 Identities=28% Similarity=0.660 Sum_probs=40.4
Q ss_pred CcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHH
Q 043604 36 GIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPF 98 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 98 (268)
..+.|+||++.+..+ +.++|+|.||..|+..++.. ..+.||. |+..+...
T Consensus 77 ~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKA-------QVFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHh-------CCCcCCC--CCccCCCC
Confidence 357899999988543 35899999999999999973 2368999 99888765
No 40
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.17 E-value=4.8e-07 Score=63.47 Aligned_cols=52 Identities=23% Similarity=0.586 Sum_probs=40.2
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
.....|.||++++...+.. ..++|+|.||..|+..|+.. ...||. |+..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWLQK--------SGTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEE-EEETTTEEEEHHHHHHHHTT--------TCBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcE-EecCCCChHHHHHHHHHHHc--------CCcCcC--cCccCCC
Confidence 4567899999998665444 46789999999999999842 137999 9877653
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.17 E-value=1.1e-06 Score=65.30 Aligned_cols=49 Identities=29% Similarity=0.711 Sum_probs=39.3
Q ss_pred CcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 36 GIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
..+.|+||++.+..+ +.++|||.||..|+..|+.. ....||. |+..+..
T Consensus 51 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRA-------QVFSCPA--CRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCTT--TCCBCCT
T ss_pred cCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhH-------CcCCCCC--CCccCCC
Confidence 357899999988543 35799999999999999971 2368999 9988765
No 42
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.15 E-value=1.6e-06 Score=63.31 Aligned_cols=55 Identities=22% Similarity=0.507 Sum_probs=40.0
Q ss_pred cccccccccCCcCCc--------------CccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 37 IFTCEICIEPISAND--------------KFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~--------------~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
..+|+||++++.... .+...++|+|.||..||..|+...- ......||. |+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~---~~~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN---KDGSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC---CSSCCBCTT--TCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc---CCCCCcCCC--CCCccC
Confidence 458999999985432 1223688999999999999995432 123578999 987664
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.14 E-value=4.6e-07 Score=66.40 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=38.4
Q ss_pred cccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
.+.|+||++.+..+ +.++|||.||..|+..++.. ....||. |+..+..
T Consensus 15 ~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEK-------ASLCCPF--CRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCT-------TTSBCTT--TCCBCHH
T ss_pred CCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhH-------CcCCCCC--CCcccCc
Confidence 57899999988543 35799999999999988742 2378998 9988875
No 44
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.14 E-value=2.3e-07 Score=70.31 Aligned_cols=46 Identities=35% Similarity=0.774 Sum_probs=36.5
Q ss_pred cccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
.++|+||++.+..+ +.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 53 ~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~--------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKR--------KIECPI--CRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTT--------CSBCTT--TCCBCC
T ss_pred cCCCcccCcccCCc----eECCCCCCccHHHHHHHHHc--------CCcCCC--CCCcCC
Confidence 46899999988532 46799999999999998742 256999 998765
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=1.8e-06 Score=60.90 Aligned_cols=59 Identities=27% Similarity=0.581 Sum_probs=44.9
Q ss_pred CCcccccccccCCcCCcCccccC-CCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCC-CCHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKD-LCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQF-LDPFS 99 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~-i~~~~ 99 (268)
...+.|+||++.+..+ +.+ .|||.||+.||..|+...-. ....+.||..+|... +...+
T Consensus 5 ~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~--~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQK--RKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHT--TTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccC--cCCCCCCCcCcCcccccCHhh
Confidence 4568999999988543 356 49999999999999986532 234688999999876 66544
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.05 E-value=2.2e-06 Score=56.42 Aligned_cols=48 Identities=31% Similarity=0.624 Sum_probs=37.8
Q ss_pred CcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 36 GIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
...+|+||++.+... . ..++|+|.||..|+..|+... ..||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~--~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--S-MALPCLHAFCYVCITRWIRQN--------PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--E-EETTTTEEESTTHHHHHHHHS--------CSTTT--TCCCCC
T ss_pred CCCCCeeCCccccCC--c-EecCCCCeeHHHHHHHHHhCc--------CcCcC--CChhhH
Confidence 456899999998532 1 468999999999999998532 47998 988765
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.00 E-value=4.5e-06 Score=57.63 Aligned_cols=51 Identities=10% Similarity=-0.054 Sum_probs=41.4
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFS 99 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 99 (268)
...+.|+||++.+..+ +.++|||.||+.|+..|+.. . ..||. |+..+....
T Consensus 12 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~---~-----~~cP~--~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLN---S-----PTDPF--NRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHH---C-----SBCTT--TCCBCCGGG
T ss_pred chheECcccCchhcCC----eECCCCCEECHHHHHHHHhc---C-----CCCCC--CcCCCChHh
Confidence 4578999999988543 46789999999999999974 1 47998 998887654
No 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.96 E-value=1.8e-06 Score=62.49 Aligned_cols=50 Identities=30% Similarity=0.647 Sum_probs=38.6
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
...+.|+||++.+..+ + .+.+|||.||..|+..|+.. ...||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--T-TIIECLHSFCKTCIVRYLET--------SKYCPI--CDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSE--E-EETTTCCEEEHHHHHHHHTS--------CSBCTT--TCCBSCS
T ss_pred CCcCCCccCChHHhCc--C-EeCCCCChhhHHHHHHHHHh--------CCcCcC--CCccccc
Confidence 3467899999988543 2 23599999999999999853 168998 9977664
No 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.94 E-value=8.8e-07 Score=65.12 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=37.8
Q ss_pred CcccccccccCCcCCcCccccC-CCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHH
Q 043604 36 GIFTCEICIEPISANDKFRNKD-LCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPF 98 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 98 (268)
..+.|+||++.+..+ +.+ +|||.||..|+..++. ..||. |+..+...
T Consensus 21 ~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~----------~~CP~--Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG----------TGCPV--CYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT----------TBCSS--SCCBCSCS
T ss_pred hCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc----------CCCcC--CCCcCccc
Confidence 368899999988543 345 8999999999998874 57998 99887543
No 50
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=2.4e-07 Score=61.50 Aligned_cols=48 Identities=29% Similarity=0.648 Sum_probs=37.3
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
.....|+||++.+.. ..++|+|.||..|+..|+. ....||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--------~~~~CP~--Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--------RHRNCPI--CRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--------CCSSCHH--HHHCTTC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--------CcCcCCC--cCCcccC
Confidence 456789999998853 3589999999999999875 2467988 8766553
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.84 E-value=1.9e-06 Score=57.89 Aligned_cols=42 Identities=26% Similarity=0.564 Sum_probs=33.5
Q ss_pred cccccccccCCcCCcCccccCCCCCh-hhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHH-FCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
...|.||++.+... ..++|||. ||..|+..+ ..||. |+..+.
T Consensus 24 ~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------------DKCPM--CYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------------SBCTT--TCCBCS
T ss_pred CCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------------ccCCC--cCcCcc
Confidence 56899999987432 46799999 999998765 57998 988765
No 52
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=4e-06 Score=57.34 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=38.3
Q ss_pred CCcccccccccCCcC-----------CcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHH
Q 043604 35 NGIFTCEICIEPISA-----------NDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPF 98 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~-----------~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 98 (268)
....+|.||++++.. .+..+.+..|+|.|+.+||..|+... -.||. |+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~--CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPL--CQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTT--TCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCC--cCCCcchh
Confidence 345668888888743 22233345699999999999998532 37999 99877643
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.76 E-value=7.2e-06 Score=58.17 Aligned_cols=50 Identities=14% Similarity=-0.109 Sum_probs=40.7
Q ss_pred CCcccccccccCCcCCcCccccCCCC-ChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCS-HHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPF 98 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 98 (268)
...+.|+||++.+..+ +.++|| |.||+.||..|+.. ...||. |+..+...
T Consensus 20 p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~--------~~~cP~--~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLS--------DQTDPF--NRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTT--------SCBCTT--TCSBCCTT
T ss_pred cHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHh--------CCCCCC--CCCCCChh
Confidence 4578999999988544 468999 99999999999863 247998 99888764
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=8.1e-06 Score=54.88 Aligned_cols=43 Identities=26% Similarity=0.517 Sum_probs=33.1
Q ss_pred cccccccccCCcCCcCccccCCCCCh-hhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHH-FCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
..+|.||++.+... +.++|||. ||..|+.. ...||. |+..+..
T Consensus 25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH------------CSBCTT--TCCBCCC
T ss_pred CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC------------CCCCcc--CCceecC
Confidence 46799999987432 46899999 99999942 157999 9887653
No 55
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.74 E-value=2.4e-05 Score=61.52 Aligned_cols=53 Identities=9% Similarity=-0.031 Sum_probs=41.9
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFS 99 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 99 (268)
....+.|+||++.+..+ +.++|||.||+.|+..|+... + ..||. |+.++...+
T Consensus 103 ip~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~----~---~tcP~--t~~~l~~~~ 155 (179)
T 2f42_A 103 IPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV----G---HFDPV--TRSPLTQDQ 155 (179)
T ss_dssp CCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT----C---SBCTT--TCCBCCGGG
T ss_pred CcHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhC----C---CCCCC--CcCCCChhh
Confidence 45669999999988643 467999999999999999752 1 15998 998887653
No 56
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.71 E-value=1.5e-05 Score=62.10 Aligned_cols=48 Identities=31% Similarity=0.823 Sum_probs=37.9
Q ss_pred cccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
.+.|+||++.+..+ + ..++|||.||..|+..|+.. ....||. |+..+.
T Consensus 54 ~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--M-TTKECLHRFCADCIITALRS-------GNKECPT--CRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSSE--E-EETTTCCEEEHHHHHHHHHT-------TCCBCTT--TCCBCC
T ss_pred CCCCcccChHhhCc--C-EeCCCCChhHHHHHHHHHHh-------CcCCCCC--CCCcCC
Confidence 46899999998542 2 24599999999999999872 1367999 998875
No 57
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.70 E-value=5.5e-06 Score=59.04 Aligned_cols=50 Identities=10% Similarity=-0.075 Sum_probs=40.3
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPF 98 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 98 (268)
...+.|+||++.+..+ +.++|||.||+.|+..|+.. ...||. |+..+...
T Consensus 27 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--------~~~cP~--~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLN--------SPTDPF--NRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTS--------CSBCSS--SCCBCCTT
T ss_pred cHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHc--------CCCCCC--CCCCCChh
Confidence 4578999999988544 45789999999999999862 257998 99888764
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.64 E-value=1.2e-05 Score=60.05 Aligned_cols=59 Identities=22% Similarity=0.608 Sum_probs=44.5
Q ss_pred CCCcccccccccCCcCC---cCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhh
Q 043604 34 TNGIFTCEICIEPISAN---DKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKL 102 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 102 (268)
+.....|+||++.+... ......++|+|.||..|+..|+... ..||. |+..+..+.+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP~--Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCPT--CRKKINHKRYHP 130 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCTT--TCCBCCGGGEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCCC--CCCcCChhccee
Confidence 45678899999987532 1112467999999999999998642 37999 999988876654
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.64 E-value=2.4e-05 Score=65.95 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=41.6
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFS 99 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~ 99 (268)
....+.|+||++.+..+ +.++|||.||+.|+..|+... + ..||. |+.++....
T Consensus 205 ~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~----~---~~cP~--~~~~~~~~~ 257 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV----G---HFNPV--TRSPLTQEQ 257 (281)
T ss_dssp CCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHT----C---SSCTT--TCCCCCGGG
T ss_pred CCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHC----C---CCCcC--CCCCCchhc
Confidence 44678999999988644 468899999999999999742 1 23998 999887654
No 60
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.61 E-value=4.6e-05 Score=52.61 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=33.8
Q ss_pred CCcccCCCCCceeeecCCcCeEEec-CCc-ccccccccccC
Q 043604 196 MHWARCPACGSCVERKEGCRVMYCS-CHS-VTYSRAKHISL 234 (268)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~~ 234 (268)
.+.+-||+|...+...++-..++|. |++ ||+.|+.+|..
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~ 63 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEE 63 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCT
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCchhh
Confidence 3456799999999888888889997 999 99999999933
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=4.9e-05 Score=51.65 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=41.6
Q ss_pred CCcccccccccCCcCCcCccccCCCC-----ChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCS-----HHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPF 98 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 98 (268)
.....|.||++++...+.+ .++|. |.|..+||..|+...- ...||. |+..+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~------~~~Cpl--Cr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSSD------TRCCEL--CKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHHC------CSBCSS--SCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhCC------CCCCCC--CCCeeecC
Confidence 4456899999988655544 47886 9999999999998641 368999 99876543
No 62
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.53 E-value=1.3e-05 Score=66.30 Aligned_cols=58 Identities=26% Similarity=0.498 Sum_probs=44.9
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSC 100 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i 100 (268)
....+.|+||++.+..+ + ....|||.||+.||..|+.. .....||..||...+...++
T Consensus 178 ~~~el~CPIcl~~f~DP--V-ts~~CGHsFcR~cI~~~~~~------~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--L-ISRKCNHVFDRDGIQNYLQG------YTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--E-EESSSCCEEEHHHHHHHSTT------CSCEECSGGGCSCEECGGGE
T ss_pred CceeeECcCccCcccCC--e-eeCCCCCcccHHHHHHHHHh------CCCCCCCcccccCcCchhhC
Confidence 34568999999998544 2 23589999999999999862 13478999999998876554
No 63
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.47 E-value=4.9e-05 Score=66.72 Aligned_cols=51 Identities=24% Similarity=0.562 Sum_probs=39.7
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPF 98 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 98 (268)
....+|+||++..... +.++|||.||..|+..|+.. ....||. |+..+...
T Consensus 330 ~~~~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~-------~~~~CP~--CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQES-------EGQGCPF--CRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHH-------TCSBCTT--TCCBCCEE
T ss_pred CCCCCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhc-------CCCCCCC--CCCccCCc
Confidence 3447999999988432 46899999999999999874 1357998 99877654
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=4.4e-05 Score=50.20 Aligned_cols=45 Identities=24% Similarity=0.637 Sum_probs=34.6
Q ss_pred CCcccccccccCCcCCcCccccCCCCCh-hhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHH-FCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
.....|.||++.... .++++|+|. ||..|+.. + ..||. |+..|..
T Consensus 13 ~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~-----~-------~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKY-----F-------QQCPM--CRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHH-----C-------SSCTT--TCCCCCC
T ss_pred CCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhc-----C-------CCCCC--CCcchhc
Confidence 446789999997742 257899999 99999983 1 47998 9887654
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.43 E-value=8.2e-05 Score=53.41 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=38.9
Q ss_pred CCcccccccccCCcCC--------------cCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 35 NGIFTCEICIEPISAN--------------DKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
....+|.||++.+... +.....++|+|.|+..|+..|+.. ...||. |+..+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------~~~CP~--Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPL--DNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------CSBCSS--SCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------CCcCcC--CCCccee
Confidence 3456899999988543 111235789999999999999763 257998 9887653
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.38 E-value=1.5e-05 Score=54.10 Aligned_cols=43 Identities=26% Similarity=0.653 Sum_probs=33.5
Q ss_pred cccccccccCCcCCcCccccCCCCCh-hhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHH-FCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
...|.||++..... .+++|||. ||.+|+..+ ..||. |+..+..
T Consensus 18 ~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL------------QSCPV--CRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC------------SBCTT--TCCBCCE
T ss_pred CCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc------------CcCCC--CCchhhC
Confidence 45799999987432 46899999 999998743 28998 9987765
No 67
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.37 E-value=3.8e-05 Score=52.24 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=35.3
Q ss_pred CCcccCCC--CCceeeecCCcCeEEe------cCCc-ccccccccccC
Q 043604 196 MHWARCPA--CGSCVERKEGCRVMYC------SCHS-VTYSRAKHISL 234 (268)
Q Consensus 196 ~~~k~CP~--C~~~iek~~GCnhm~C------~C~~-FC~~C~~~~~~ 234 (268)
...+-||. |+..|...++...++| .|++ ||+.|+..|..
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 45789997 9999999999999999 6999 99999999966
No 68
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.33 E-value=6.7e-05 Score=48.65 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=34.8
Q ss_pred cccccccccCCcCCcCccccCCCCCh-hhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHH-FCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
..+|.||++..... .+ ..++|||. ||.+|+..+... .-.||. |+..|.
T Consensus 8 ~~~C~IC~~~~~~~-~~-~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNG-CI-VHGKTGHLMACFTCAKKLKKR--------NKPCPV--CRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCE-EE-EETTEEEEEECHHHHHHHHHT--------TCCCTT--TCCCCC
T ss_pred cCCCCcCCCCCCCE-EE-ECCCCCChhhHHHHHHHHHHc--------CCcCCC--cCcchh
Confidence 45799999987432 11 12499999 899999988742 136998 998774
No 69
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.23 E-value=7.6e-05 Score=48.24 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=35.0
Q ss_pred cccccccccCCcCCcCccccCCCCCh-hhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHH-FCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
...|.||++..... .+ ..++|||. ||.+|...+... .-.||. |+..|.
T Consensus 7 ~~~C~IC~~~~~~~-~~-~~~pCgH~~~C~~C~~~~~~~--------~~~CPi--CR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG-NI-IHGRTGHLVTCFHCARRLKKA--------GASCPI--CKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE-EE-EETTEEEEEECHHHHHHHHHT--------TCBCTT--TCCBCC
T ss_pred CCCCcccCCcCCCe-EE-EecCCCCHhHHHHHHHHHHHh--------CCcCCC--cCchhh
Confidence 56799999976432 12 23599998 999999987642 147999 998774
No 70
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.10 E-value=9.3e-05 Score=54.00 Aligned_cols=52 Identities=21% Similarity=0.455 Sum_probs=0.9
Q ss_pred CcccccccccCCcCC--------------cCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 36 GIFTCEICIEPISAN--------------DKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
..-.|.||++++... +..+..++|+|.|+..|+..|+... ..||. |+..+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP~--Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCPL--DNREWEF 112 (117)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCCC--CCCeeee
Confidence 446899999998532 1112335899999999999998752 36998 9877654
No 71
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=0.00032 Score=46.72 Aligned_cols=52 Identities=21% Similarity=0.657 Sum_probs=39.6
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
.....+|.||++.+...+. ...|+|.|...||..|++++- .-.||. |+..+.
T Consensus 12 ~~~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~~~------~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNA------EPRCPH--CNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTTCS------SCCCTT--TCSCCC
T ss_pred cCCCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHhcC------CCCCCC--CcCcCC
Confidence 4456789999999965432 348999999999999996421 257998 987765
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.83 E-value=0.0011 Score=56.88 Aligned_cols=62 Identities=16% Similarity=0.405 Sum_probs=44.4
Q ss_pred CCCcccccccccCCcCCcCcc----ccCCCCChhhHHHHHHHHHHHhhcC---CCceeccCCCCCCCCCCH
Q 043604 34 TNGIFTCEICIEPISANDKFR----NKDLCSHHFCQDCIAKYIEAKVQDN---NTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~----~~~~C~H~fC~~Cl~~~~~~~i~~~---~~~~i~CP~~~C~~~i~~ 97 (268)
+....+|.|||+.+......+ ....|+|.|...||..|+.+.-... +...=.||. |+.+|+-
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCCc
Confidence 456789999999886533221 1357999999999999998865431 223347998 9988763
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.28 E-value=0.00043 Score=60.14 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=34.7
Q ss_pred CCcccccccccCCcCCcCccccCCCCCh-hhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHH-FCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
.....|+||++.+... +.++|||. ||..|+..+ ..||. |+..+.
T Consensus 293 ~~~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~------------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL------------RKCPI--CRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC------------SBCTT--TCCBCC
T ss_pred cCCCCCCccCCcCCce----EEcCCCChhHhHHHHhcC------------CcCCC--CCCCcc
Confidence 3457899999988432 46799999 999998754 47998 988765
No 74
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.03 E-value=0.0032 Score=40.01 Aligned_cols=39 Identities=26% Similarity=0.734 Sum_probs=33.2
Q ss_pred CcccCCccccCceeeeccccccCCcCeeeCcc--cccccccccccccC
Q 043604 125 ERSYCPNRNCMALVVNGCEINYGTLKKARCPN--CTQWFCFQCKLAWH 170 (268)
Q Consensus 125 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~H 170 (268)
+.+.|| .|...|.....- +.++|.. |+..||+.|..+|-
T Consensus 5 ~~k~CP--~C~~~Iek~~GC-----nhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKDGGC-----NHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCT--TTCCCCSSCCSC-----CSSSCCSSGGGSCCSSSSCSCSG
T ss_pred cceECc--CCCCeeEeCCCC-----CcEEECCCCcCCEEeeCcCCCcc
Confidence 467888 899999887654 7899987 99999999999873
No 75
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.97 E-value=0.042 Score=34.72 Aligned_cols=50 Identities=18% Similarity=0.508 Sum_probs=35.9
Q ss_pred CCcccccccccCCcCCcCccccCCC--CC---hhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLC--SH---HFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C--~H---~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
.....|.||+++.. . .+ .++| .+ .|..+||..|+...- ...||. |+..+.
T Consensus 4 ~~~~~CrIC~~~~~-~-~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG-N-ER--FRACGCTGELENVHRSCLSTWLTISR------NTACQI--CGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS-C-CC--CCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCTT--TCCBCC
T ss_pred CCCCEeEEeecCCC-C-ce--ecCcCCCCchhhhHHHHHHHHHHhCC------CCccCC--CCCeee
Confidence 34568999999753 2 23 3665 44 899999999997542 368998 887654
No 76
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=94.73 E-value=0.026 Score=37.74 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=23.5
Q ss_pred cCCCCCceeeecCCcCeEEec-CCc---ccccccccccCC
Q 043604 200 RCPACGSCVERKEGCRVMYCS-CHS---VTYSRAKHISLR 235 (268)
Q Consensus 200 ~CP~C~~~iek~~GCnhm~C~-C~~---FC~~C~~~~~~~ 235 (268)
.||.|+.++|+ |. ||+ ||=.|+.-++..
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~LiSkk 64 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLISKK 64 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCCCTT
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEeecc
Confidence 89999999997 76 884 999998877653
No 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.72 E-value=0.013 Score=40.87 Aligned_cols=46 Identities=30% Similarity=0.693 Sum_probs=31.4
Q ss_pred ccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCC
Q 043604 38 FTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFL 95 (268)
Q Consensus 38 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i 95 (268)
..|.+|--++.. ...+.+|.|+||.+|...+.+...+ .||. |..+|
T Consensus 2 hfC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k-------~Cp~--C~~~V 47 (101)
T 3vk6_A 2 HFCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDK-------MCPG--CSDPV 47 (101)
T ss_dssp CBCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCC-------BCTT--TCCBC
T ss_pred eecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCC-------CCcC--cCCee
Confidence 357888766632 2247899999999999998765432 3665 66544
No 78
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.41 E-value=0.018 Score=36.61 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=39.2
Q ss_pred cccccccccCCcCCcCccccC-CCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHHHHhh
Q 043604 37 IFTCEICIEPISANDKFRNKD-LCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPFSCKL 102 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 102 (268)
.+.|+|+++....+ +.. .+||.|++.++..|+... . +||. .+.++..+++..
T Consensus 3 ~~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~--~------~cP~--t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDT--G------NDPI--TNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHH--S------BCTT--TCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhC--C------CCcC--CcCCCChhhcEE
Confidence 47899999988643 345 899999999999999752 1 3888 777777766543
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.14 E-value=0.3 Score=32.30 Aligned_cols=66 Identities=26% Similarity=0.583 Sum_probs=44.4
Q ss_pred CCCcccccccccCCcCCcCccccCCC----CChhhHHHHHHHHHHHhhcCCCceeccCC-CCCC---CC----CCHHHHh
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLC----SHHFCQDCIAKYIEAKVQDNNTAKIECPG-VHCD---QF----LDPFSCK 101 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C----~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~-~~C~---~~----i~~~~i~ 101 (268)
+...+.|.+|.+.+... .| ..| .|.||..|-+.+|+.+-.. ..+.||. ..|. .. +-..+|.
T Consensus 12 ~~a~l~CtlC~erLEdt-HF---VQCPsv~~HkFCFpCsr~sIk~q~~~---~EvyCPSG~kCpL~gS~~PWAFmqgEIa 84 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDT-HF---VQCPSVPSHKFCFPCSRESIKAQGAT---GEVYCPSGEKCPLVGSNVPWAFMQGEIA 84 (93)
T ss_dssp SCCSCCCSSSCSCCSST-TS---EECSSCSSCEECHHHHHHHHHHHHSS---SCCCCTTSSCCBCSSSSSBCCCCHHHHH
T ss_pred CCCeeEeecchhhhccC-ce---eeCCCccCCeeeccccHHHHHhcCCC---CcEECCCCCccccCCCcCchHHHhhHHH
Confidence 46678999999988654 23 234 7999999999999987643 4577775 2332 11 2345666
Q ss_pred hcCCh
Q 043604 102 LMIPS 106 (268)
Q Consensus 102 ~~l~~ 106 (268)
.+|+.
T Consensus 85 tILg~ 89 (93)
T 2cs3_A 85 TILSG 89 (93)
T ss_dssp HHHSC
T ss_pred HHhcc
Confidence 66554
No 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.74 E-value=0.095 Score=36.59 Aligned_cols=33 Identities=15% Similarity=0.598 Sum_probs=24.1
Q ss_pred cccccccccCCcCCcCccccCCCCChhhHHHHHH
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHHFCQDCIAK 70 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 70 (268)
...|.||.+++... ....-+.|+|.||..|+..
T Consensus 3 e~~C~~C~~~~~~~-av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQD-AVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCB-CCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCC-ceEECCcCChHHhHHHCHH
Confidence 57899999764222 1212389999999999998
No 81
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=89.63 E-value=0.35 Score=29.05 Aligned_cols=27 Identities=26% Similarity=0.531 Sum_probs=21.5
Q ss_pred cccCCCCCc-eeeecCCcCeEEec-CCc-c
Q 043604 198 WARCPACGS-CVERKEGCRVMYCS-CHS-V 224 (268)
Q Consensus 198 ~k~CP~C~~-~iek~~GCnhm~C~-C~~-F 224 (268)
...||.|+. .+..+..=..+.|. ||. |
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 468999998 88777766778887 886 5
No 82
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=88.62 E-value=0.32 Score=32.46 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=35.4
Q ss_pred ccCCCCCceeeecCCcCeEEec-CC-----c-ccccccccccCC------CCCCCCCCCCCcccce
Q 043604 199 ARCPACGSCVERKEGCRVMYCS-CH-----S-VTYSRAKHISLR------KHSTRGDNKGWRIYKV 251 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~-----~-FC~~C~~~~~~~------~~~~~~~~~~~~~~~~ 251 (268)
..||.|+..|++++| +..|. |+ . ||-.|++++... +.+|..-+...++.++
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~LiSkkrv 66 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGLISKKRV 66 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCCCCTTSS
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCEeecceE
Confidence 579999999999888 66686 87 4 788888876432 3446655556665544
No 83
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=87.89 E-value=0.39 Score=39.22 Aligned_cols=54 Identities=22% Similarity=0.614 Sum_probs=40.5
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPF 98 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 98 (268)
+.....|.||.+-+..... -..|+|.|...|+..|+.+ .....||. |+..++.+
T Consensus 177 ~~~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~------~~~~~CP~--C~~~W~~~ 230 (238)
T 3nw0_A 177 PDAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQS------NAEPRCPH--CNDYWPHE 230 (238)
T ss_dssp TTTCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTT------CSSCBCTT--TCCBCCSC
T ss_pred CCCCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHh------CCCCCCCC--CCCCCCCC
Confidence 3457889999998865422 2349999999999999853 23468997 99877654
No 84
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=87.84 E-value=0.26 Score=33.16 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=28.3
Q ss_pred CCcccCCCCCceeeecCCcCeEEec-CCc-ccccccccccC
Q 043604 196 MHWARCPACGSCVERKEGCRVMYCS-CHS-VTYSRAKHISL 234 (268)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~~ 234 (268)
...-.||.|+....+..+=..+.|. |++ |- |+.|..
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT---GGSYKP 62 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE---CCSSSS
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEec---CCEecc
Confidence 3456899999999999888899998 998 83 444444
No 85
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=86.07 E-value=0.62 Score=30.05 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=23.1
Q ss_pred CcccCCCCCceeeecCCcCeEEec-CCc-c
Q 043604 197 HWARCPACGSCVERKEGCRVMYCS-CHS-V 224 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~-F 224 (268)
..-.||.|+.+++-..+...+.|. |+. |
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 456899999999988888888886 776 5
No 86
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.81 E-value=0.37 Score=29.07 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=18.4
Q ss_pred CcccCCCCCceeeecCCcCeEEec-CCc
Q 043604 197 HWARCPACGSCVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (268)
..+.||+|+..+.-...=+.+.|. ||+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGY 45 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCC
Confidence 458899999843322222788997 987
No 87
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=85.73 E-value=0.34 Score=29.88 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=20.0
Q ss_pred CcccCCCCCceeeecCCcCeEEec-CCc-c
Q 043604 197 HWARCPACGSCVERKEGCRVMYCS-CHS-V 224 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~-F 224 (268)
..+.||+|+..+.-...-+.++|. |++ +
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 358899999855433334689997 998 5
No 88
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=84.96 E-value=0.81 Score=31.43 Aligned_cols=34 Identities=18% Similarity=0.594 Sum_probs=28.6
Q ss_pred ccCCCCCceeeecCCcCeEEec-CC-----c-ccccccccccC
Q 043604 199 ARCPACGSCVERKEGCRVMYCS-CH-----S-VTYSRAKHISL 234 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~-----~-FC~~C~~~~~~ 234 (268)
..||.|+..++.++| +.+|. |. . ||-.|++++..
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHHHH
Confidence 799999999999988 77797 98 4 68889887653
No 89
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=84.51 E-value=0.22 Score=34.71 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=28.9
Q ss_pred ccCCCCCceeeecCCcCeEEec-CCc-ccccccccccCCC-CCCCC
Q 043604 199 ARCPACGSCVERKEGCRVMYCS-CHS-VTYSRAKHISLRK-HSTRG 241 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~~~~-~~~~~ 241 (268)
-.||-|...+. +-+++. ||| ||+.|...|-... ..|+.
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~ 63 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLTEQRAQCPH 63 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHHHTCSBCTT
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHHHHCcCCCCC
Confidence 58999998886 357776 999 9999999986543 34443
No 90
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.41 E-value=0.45 Score=30.04 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=24.1
Q ss_pred cccCCCCCceeeecCCcCeEEecCCc-ccccccccccC
Q 043604 198 WARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISL 234 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~ 234 (268)
...||-|...+... ++=.||| ||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-----KQTECGHRFCESCMAALLS 47 (66)
T ss_dssp CEECTTTCCEESSC-----CCCSSSCCCCHHHHHHHHT
T ss_pred CCCCCCCChHhcCe-----eECCCCCHHHHHHHHHHHH
Confidence 36799998877532 3325999 99999999874
No 91
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.36 E-value=0.45 Score=28.68 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=26.7
Q ss_pred ccCCCCCceeeecCCcCeEEec-CCc-ccccccccccCCCC
Q 043604 199 ARCPACGSCVERKEGCRVMYCS-CHS-VTYSRAKHISLRKH 237 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~~~~~ 237 (268)
..||-|...+...+ ..+.-. |++ ||..|...|-....
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~~~~ 44 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLPRCGHGFHAECVDMWLGSHS 44 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECSSSCCEECTTHHHHTTTTCC
T ss_pred CcCccCCccccCCC--ceEECCCCCCcccHHHHHHHHHcCC
Confidence 57888887776443 345555 999 99999999976433
No 92
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=81.93 E-value=2 Score=27.13 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=27.9
Q ss_pred CcccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCCCCC
Q 043604 197 HWARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHSTRGD 242 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~ 242 (268)
...+|..|+..+... -+.|+|+. ||-.- -....|.|.++
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~H---R~~e~H~C~fD 53 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCKCGSTFCGSH---RYPEKHECSFD 53 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECTTSCEECSSS---CSSTTTTCCCC
T ss_pred cCCcChhhCCccccc----CeEeecCCEecccC---CCccccCCCcc
Confidence 346899999987765 38899999 98543 23346777665
No 93
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.82 E-value=0.32 Score=30.45 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=24.9
Q ss_pred cccCCCCCceeeecCCcCeEEecCCc-ccccccccccC
Q 043604 198 WARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISL 234 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~ 234 (268)
...||-|...+.. -++-.||| ||+.|...|-.
T Consensus 20 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQK-----PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCSS-----CEECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhCC-----eEEeCCCCcchHHHHHHHHH
Confidence 3589999887763 34447999 99999999865
No 94
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=81.61 E-value=2.3 Score=26.91 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=28.3
Q ss_pred CcccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCCCCC
Q 043604 197 HWARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHSTRGD 242 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~ 242 (268)
...+|..|+..+... -+.|+|+. ||-.- -....|.|.++
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~H---Ry~e~H~C~fD 53 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT----GFMCRCGTTFCGSH---RYPEVHGCTFD 53 (64)
T ss_dssp SCCCCTTTCCCCCTT----CEECSSSCEECTTT---CSTTTTTCCCC
T ss_pred cCCcChhhCCccCcc----CEEeecCCEecccc---CCcccCCCCch
Confidence 447899999988866 38899999 98653 22346667665
No 95
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=81.24 E-value=0.86 Score=33.61 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=29.5
Q ss_pred ccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCCCCC
Q 043604 199 ARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHSTRGD 242 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~ 242 (268)
-.||=|...+.. -++-.||| ||..|...|-.....|+.-
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~~~~~~CP~C 93 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWMKRKIECPIC 93 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHTTTCSBCTTT
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHHHcCCcCCCC
Confidence 369999887752 35556999 9999999997766666654
No 96
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.57 E-value=0.53 Score=30.25 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=26.3
Q ss_pred cccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCC
Q 043604 198 WARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHST 239 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~ 239 (268)
...||-|...+.. -+.-.||| ||+.|...|-.....|
T Consensus 15 ~~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~~~~~C 52 (71)
T 2d8t_A 15 VPECAICLQTCVH-----PVSLPCKHVFCYLCVKGASWLGKRC 52 (71)
T ss_dssp CCBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTTCSSBC
T ss_pred CCCCccCCcccCC-----CEEccCCCHHHHHHHHHHHHCCCcC
Confidence 3579999877643 24446999 9999999886644333
No 97
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.51 E-value=0.93 Score=29.04 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=25.0
Q ss_pred cccCCCCCceeeecCCcCeEEecCCc-ccccccccccC
Q 043604 198 WARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISL 234 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~ 234 (268)
...||-|...+. +-++-.||| ||+.|...|-.
T Consensus 20 ~~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccC-----CeEEcCCCChhhHHHHHHHHH
Confidence 468999998776 234446999 99999999875
No 98
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=79.78 E-value=2.1 Score=27.76 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=28.0
Q ss_pred cccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCCCCC
Q 043604 198 WARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHSTRGD 242 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~ 242 (268)
...||-|...+.... ..+.=.|+| ||+.|...|-.....|..-
T Consensus 15 ~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~C 58 (78)
T 2ect_A 15 GLECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLEQHDSCPVC 58 (78)
T ss_dssp SCCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHTTTCSCTTT
T ss_pred CCCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHHcCCcCcCc
Confidence 468998887765332 112224999 9999999987655445443
No 99
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=79.58 E-value=0.37 Score=30.81 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=28.9
Q ss_pred CcccCCCCCceeeec-CCcCeEEe-cCCc-ccccccccccCCCCCCC
Q 043604 197 HWARCPACGSCVERK-EGCRVMYC-SCHS-VTYSRAKHISLRKHSTR 240 (268)
Q Consensus 197 ~~k~CP~C~~~iek~-~GCnhm~C-~C~~-FC~~C~~~~~~~~~~~~ 240 (268)
....||-|...+... .+=..+.- .||| ||+.|...|-.....|+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP 55 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 55 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCT
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCC
Confidence 346789888877654 22233344 4999 99999999865444443
No 100
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=78.24 E-value=1.9 Score=28.05 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=27.9
Q ss_pred cccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCCCCC
Q 043604 198 WARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHSTRGD 242 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~ 242 (268)
..+|..|+..+...+ +.|+|+. ||-.- -....|.|.++
T Consensus 25 ~nRC~~CrKkvgL~g----f~CrCg~~FCs~H---Ry~e~H~C~fD 63 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDCRCGNLFCGLH---RYSDKHNCPYD 63 (74)
T ss_dssp TTBCSSSCCBCGGGC----EECTTSCEECSSS---CSTTTTTCCCC
T ss_pred CCcChhhCCcccccC----eecCCCCEechhc---CCCccCCCcch
Confidence 468999999988774 8999999 98543 23345666654
No 101
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=78.10 E-value=0.66 Score=32.57 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=29.5
Q ss_pred cccCCCCCceeeecCCcCeEEe-cCCc-ccccccccccCCCCCCCC
Q 043604 198 WARCPACGSCVERKEGCRVMYC-SCHS-VTYSRAKHISLRKHSTRG 241 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C-~C~~-FC~~C~~~~~~~~~~~~~ 241 (268)
.-.||-|...+.. -++- .||| ||+.|...|-.....|..
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 55 (108)
T 2ckl_A 15 HLMCVLCGGYFID-----ATTIIECLHSFCKTCIVRYLETSKYCPI 55 (108)
T ss_dssp GTBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHTSCSBCTT
T ss_pred cCCCccCChHHhC-----cCEeCCCCChhhHHHHHHHHHhCCcCcC
Confidence 3589999888753 5777 5999 999999998765544544
No 102
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.54 E-value=0.7 Score=29.73 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=26.8
Q ss_pred cccCCCCCceeeecCCcCeEEe-cCCc-ccccccccccCCCCCCC
Q 043604 198 WARCPACGSCVERKEGCRVMYC-SCHS-VTYSRAKHISLRKHSTR 240 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C-~C~~-FC~~C~~~~~~~~~~~~ 240 (268)
...||-|...+.. -++- .||| ||+.|...|-.....|.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~CP 54 (72)
T 2djb_A 15 YILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYYSNRCP 54 (72)
T ss_dssp GGSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHHCSSCT
T ss_pred CCCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHcCCcCC
Confidence 3589999887764 4555 4999 99999988865443443
No 103
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=77.50 E-value=0.58 Score=29.06 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=25.8
Q ss_pred ccCCCCCceeeecC-CcCeEEe-cCCc-ccccccccccCCCCCCC
Q 043604 199 ARCPACGSCVERKE-GCRVMYC-SCHS-VTYSRAKHISLRKHSTR 240 (268)
Q Consensus 199 k~CP~C~~~iek~~-GCnhm~C-~C~~-FC~~C~~~~~~~~~~~~ 240 (268)
..||-|...+.... +=..+.- .||| ||..|...|-.....|+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP 48 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 48 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCC
Confidence 35777777665431 1122333 4999 99999998865443333
No 104
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=77.43 E-value=1.7 Score=27.96 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=20.3
Q ss_pred cccCCCCCceeeecCCcCeEEec-CCc
Q 043604 198 WARCPACGSCVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (268)
.-.||.|+.+++-..+=..+.|. |+.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRL 34 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCc
Confidence 45899999999887665667776 775
No 105
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=77.36 E-value=2.7 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=16.8
Q ss_pred eccCCCCCCCCCCHHH-HhhcCChh
Q 043604 84 IECPGVHCDQFLDPFS-CKLMIPSN 107 (268)
Q Consensus 84 i~CP~~~C~~~i~~~~-i~~~l~~~ 107 (268)
-+||. |+.+++..+ |.+.|.-+
T Consensus 9 ~~~Pl--CG~~L~W~eLIeQML~~e 31 (95)
T 2k5c_A 9 AKCPI--CGSPLKWEELIEEMLIIE 31 (95)
T ss_dssp EECSS--SCCEECHHHHHHHSTTCS
T ss_pred ccCCc--CCCccCHHHHHHHHHhhc
Confidence 57999 999999865 56777643
No 106
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=77.04 E-value=2.5 Score=27.35 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=21.8
Q ss_pred CcccCCCCCceeeecCCcCeEEec-CCc-c
Q 043604 197 HWARCPACGSCVERKEGCRVMYCS-CHS-V 224 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~-F 224 (268)
..-.||.|+.+++-..+=..+.|. ||. |
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 456899999999988766677776 776 5
No 107
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=75.71 E-value=2.1 Score=27.61 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=20.2
Q ss_pred cccCCCCCceeeecCCcCeEEec-CCc
Q 043604 198 WARCPACGSCVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (268)
.-.||.|+..++-..+=..+.|. |+.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGL 34 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCc
Confidence 46899999998877665667776 775
No 108
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=75.34 E-value=0.81 Score=31.76 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=16.1
Q ss_pred hCCcccCCCCCceeeecCCc
Q 043604 195 RMHWARCPACGSCVERKEGC 214 (268)
Q Consensus 195 ~~~~k~CP~C~~~iek~~GC 214 (268)
..+.+.||.|+.+|++.+-+
T Consensus 34 ~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 34 KKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp HTTCCBCTTTCCBCSEEEEE
T ss_pred hccCCCCcCcCCeeeeeEEe
Confidence 45668999999999987653
No 109
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.24 E-value=0.54 Score=31.43 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=25.6
Q ss_pred cccCCCCCceeeecCCcCeEEecCCc-ccccccccccCC
Q 043604 198 WARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLR 235 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~ 235 (268)
...||-|...+.....- -+.-.||| ||+.|...|-..
T Consensus 15 ~~~C~IC~~~~~~~~~~-~~~~~CgH~fC~~Ci~~~~~~ 52 (88)
T 2ct2_A 15 VLECPICMESFTEEQLR-PKLLHCGHTICRQCLEKLLAS 52 (88)
T ss_dssp CCBCTTTCCBCCTTSSC-EEECSSSCEEEHHHHHHHHHH
T ss_pred CCCCccCCccccccCCC-eEECCCCChhhHHHHHHHHHc
Confidence 35799998877654211 23335999 999999988653
No 110
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=75.16 E-value=4.1 Score=26.50 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCcccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCCCCC
Q 043604 196 MHWARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHSTRGD 242 (268)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~ 242 (268)
....+|..|+..+... -+.|+|+. ||-.- -....|.|.++
T Consensus 23 ~~~~RC~~C~kkvgL~----~f~CrCg~~FCs~H---Ry~e~H~C~fD 63 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT----GFKCRCGSTFCGTH---RYPESHECQFD 63 (74)
T ss_dssp CCCCBCSSSCCBCTTT----CEECTTSCEECTTT---CSTTTSCCCSC
T ss_pred ccCccchhhcCccccc----ceEeccCCEecccc---CCCcCCCCcCc
Confidence 3457899999888776 38999999 97543 33446777665
No 111
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.11 E-value=1.5 Score=28.97 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=21.2
Q ss_pred CcCeEEecCCc-ccccccccccCCCCCCCCCC
Q 043604 213 GCRVMYCSCHS-VTYSRAKHISLRKHSTRGDN 243 (268)
Q Consensus 213 GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~~ 243 (268)
.+..+.-.|+| |+..|...|-..+..|+.-.
T Consensus 40 ~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 71 (81)
T 2ecl_A 40 DCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71 (81)
T ss_dssp TCCEEEETTSCEEEHHHHHHHTTTCCBCTTTC
T ss_pred ceEEEeCCCCCccChHHHHHHHHhCCCCCCcC
Confidence 33444445999 99999999977655555443
No 112
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=75.10 E-value=1.2 Score=32.87 Aligned_cols=32 Identities=13% Similarity=0.377 Sum_probs=23.6
Q ss_pred HHhCCcccCCCCCceeeec----CCcCeEEec-CCc-c
Q 043604 193 VERMHWARCPACGSCVERK----EGCRVMYCS-CHS-V 224 (268)
Q Consensus 193 ~~~~~~k~CP~C~~~iek~----~GCnhm~C~-C~~-F 224 (268)
++-...+.||.|+.++.-. .+.+.+.|+ |++ +
T Consensus 19 ~~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 19 SHMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp ---CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 4456679999999987443 267889998 999 7
No 113
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=74.81 E-value=0.83 Score=31.42 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=28.4
Q ss_pred ccCCCCCceeeecCCcCeEEe-cCCc-ccccccccccCCCCCCCC
Q 043604 199 ARCPACGSCVERKEGCRVMYC-SCHS-VTYSRAKHISLRKHSTRG 241 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C-~C~~-FC~~C~~~~~~~~~~~~~ 241 (268)
-.||-|...+.. -++- .||| ||..|...|-.....|+.
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 62 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSYKTQCPT 62 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTTCCBCTT
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHCCCCCCC
Confidence 489999887763 4566 4999 999999998775544443
No 114
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.66 E-value=1.1 Score=28.55 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=24.8
Q ss_pred cccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCC
Q 043604 198 WARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRK 236 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~ 236 (268)
...||-|...+.. +.=.||| ||+.|...|-...
T Consensus 15 ~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~~~ 48 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILPCAHSFCQKCIDKWSDRH 48 (70)
T ss_dssp CCCCSSSCCSCCS------EEETTTEEECHHHHHHSSCCC
T ss_pred CCCCeeCCcCccC------cccCCCCcccHHHHHHHHHCc
Confidence 4689999887653 4445999 9999999886643
No 115
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.93 E-value=2.5 Score=28.56 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=38.5
Q ss_pred ccCCccccCceeeeccccccCCcCeeeCcccccccccccccccCCCCCcchhhcccchhhHHHHHHHHhCCcccCCCCCc
Q 043604 127 SYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCFQCKLAWHAGYRCEESGNLRDWNDIAFGKLVERMHWARCPACGS 206 (268)
Q Consensus 127 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~tC~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~ 206 (268)
..|- -|+--+-....- ...+-|..|++..|..|. +| -.+.+.+.||.|++
T Consensus 17 qiCq--iCGD~VG~~~~G----e~FVAC~eC~FPvCrpCy----------EY--------------ErkeG~q~CpqCkt 66 (93)
T 1weo_A 17 QFCE--ICGDQIGLTVEG----DLFVACNECGFPACRPCY----------EY--------------ERREGTQNCPQCKT 66 (93)
T ss_dssp CBCS--SSCCBCCBCSSS----SBCCSCSSSCCCCCHHHH----------HH--------------HHHTSCSSCTTTCC
T ss_pred Cccc--cccCccccCCCC----CEEEeeeccCChhhHHHH----------HH--------------HHhccCccccccCC
Confidence 3444 566555444332 367889999998888554 22 23567799999999
Q ss_pred eeeecCCc
Q 043604 207 CVERKEGC 214 (268)
Q Consensus 207 ~iek~~GC 214 (268)
+..+..|.
T Consensus 67 rYkr~kgs 74 (93)
T 1weo_A 67 RYKRLRGS 74 (93)
T ss_dssp CCCCCTTC
T ss_pred ccccccCC
Confidence 98876554
No 116
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.33 E-value=11 Score=30.64 Aligned_cols=19 Identities=5% Similarity=-0.024 Sum_probs=14.9
Q ss_pred HHhhcCChhHHHHHHHHHH
Q 043604 99 SCKLMIPSNLFSKWCDVLF 117 (268)
Q Consensus 99 ~i~~~l~~~~~~~~~~~~~ 117 (268)
.+..-++++++..|.+...
T Consensus 168 ~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 4556688999999998765
No 117
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.16 E-value=5.2 Score=26.96 Aligned_cols=53 Identities=25% Similarity=0.503 Sum_probs=36.0
Q ss_pred CCcccccccccCCcCC---cCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCC
Q 043604 35 NGIFTCEICIEPISAN---DKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLD 96 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~ 96 (268)
.....|+||-+++-.. +.|.....|+-..|+.|+.--. ++|+ -.||. |+....
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG~---q~Cpq--CktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REGT---QNCPQ--CKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTSC---SSCTT--TCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hccC---ccccc--cCCccc
Confidence 3456899999986443 4565556788999999986443 4433 45887 876543
No 118
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=73.06 E-value=1.1 Score=30.40 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=27.4
Q ss_pred ccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCCC
Q 043604 199 ARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHSTR 240 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~ 240 (268)
..||-|...+.... ..+.-.|++ ||+.|...|-.....|+
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~~~~~CP 81 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQKSGTCP 81 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHTTTCBCT
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHHcCCcCc
Confidence 56999987776433 222334999 99999999976544443
No 119
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=71.57 E-value=1.3 Score=27.98 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=27.6
Q ss_pred CcccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCCC
Q 043604 197 HWARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHSTR 240 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~ 240 (268)
....||-|...+.... ..+.-.||| ||+.|...|-.....|+
T Consensus 13 ~~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP 55 (69)
T 2kiz_A 13 TEEKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWLITNKKCP 55 (69)
T ss_dssp CCCSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHHHHCSBCT
T ss_pred CCCCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHHHcCCCCc
Confidence 3468999988775332 223334999 99999999865443343
No 120
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=71.03 E-value=2.8 Score=29.85 Aligned_cols=27 Identities=15% Similarity=0.504 Sum_probs=22.1
Q ss_pred cccCCCCCceeeec----CCcCeEEec-CCc-c
Q 043604 198 WARCPACGSCVERK----EGCRVMYCS-CHS-V 224 (268)
Q Consensus 198 ~k~CP~C~~~iek~----~GCnhm~C~-C~~-F 224 (268)
.+-||.|+.++.-. .|.+.+.|+ |++ +
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 47899999987654 358899998 999 7
No 121
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=70.92 E-value=2.8 Score=30.62 Aligned_cols=46 Identities=20% Similarity=0.468 Sum_probs=34.1
Q ss_pred ccCCCCCCC---CCCHHHHhhcCChhHHHHHHHHHHhhhhcCCCcccCCccccCceeeecc
Q 043604 85 ECPGVHCDQ---FLDPFSCKLMIPSNLFSKWCDVLFEDYVLGFERSYCPNRNCMALVVNGC 142 (268)
Q Consensus 85 ~CP~~~C~~---~i~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~Cp~~~C~~~~~~~~ 142 (268)
.||. |+. .+....++.+|.++.++ +...++.+|++|+|.-++...+
T Consensus 3 ~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~~~ 51 (130)
T 2hu9_A 3 RCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFNEQ 51 (130)
T ss_dssp BCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEECSS
T ss_pred cCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEECCC
Confidence 5888 873 68888999988876443 3335789999999997776433
No 122
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=70.50 E-value=3.9 Score=26.12 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=21.5
Q ss_pred CcccCCCCCceeeecCCcCeEEec-CCc-c
Q 043604 197 HWARCPACGSCVERKEGCRVMYCS-CHS-V 224 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~-F 224 (268)
..-.||.|+.+++-...=..+.|. |+. |
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 456999999999887665667776 765 5
No 123
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=70.33 E-value=2.6 Score=30.44 Aligned_cols=29 Identities=14% Similarity=0.448 Sum_probs=23.2
Q ss_pred CcccCCCCCceeeec----CCcCeEEec-CCc-cc
Q 043604 197 HWARCPACGSCVERK----EGCRVMYCS-CHS-VT 225 (268)
Q Consensus 197 ~~k~CP~C~~~iek~----~GCnhm~C~-C~~-FC 225 (268)
..+-||.|+.++.-. .+-+.+.|+ |++ +=
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 457899999977743 668899998 999 73
No 124
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=69.38 E-value=1.1 Score=34.01 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=28.2
Q ss_pred ccCCCCCceeeecCCcCeEEe-cCCc-ccccccccccCC-CCCCCC
Q 043604 199 ARCPACGSCVERKEGCRVMYC-SCHS-VTYSRAKHISLR-KHSTRG 241 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C-~C~~-FC~~C~~~~~~~-~~~~~~ 241 (268)
-.||-|...+.. -++. .||| ||+.|...|-.. ...|+.
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 95 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITALRSGNKECPT 95 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHHTTCCBCTT
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHHHHhCcCCCCC
Confidence 489999888763 5777 5999 999999988654 333443
No 125
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=69.04 E-value=1.4 Score=30.08 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=34.5
Q ss_pred CCcccccccccCCcCCcCccccCCC-CChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLC-SHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDPF 98 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~~ 98 (268)
...+.|..|.-... .+..| +|+.|..||..++. ..-.||. |+.+|+..
T Consensus 26 ~G~~nCKsCWf~~k------~LV~C~dHYLCl~CLtlmL~--------~SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENK------GLVECNNHYLCLNCLTLLLS--------VSNRCPI--CKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCS------SEEECSSCEEEHHHHHHTCS--------SSSEETT--TTEECCCC
T ss_pred cCcccChhhccccC------CeeeecchhhHHHHHHHHHh--------hccCCcc--cCCcCCcc
Confidence 45688999986653 23455 79999999987763 2347898 98776653
No 126
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=68.75 E-value=3.2 Score=30.45 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=25.2
Q ss_pred CCCcccCCccccCceeeeccccccCCcCeeeCccccccc
Q 043604 123 GFERSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWF 161 (268)
Q Consensus 123 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (268)
...+.+|| .|++++.+...... ....+.|+.|++..
T Consensus 21 ~~~~~FCP--eCgNmL~pked~~~-~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCR--DCNNMLYPREDKEN-NRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCT--TTCCBCBCCBCTTT-CCBCCBCSSSCCBC
T ss_pred ccCCeeCC--CCCCEeeECccCCC-ceeEEECCCCCCcE
Confidence 35679999 99999988764310 23568888888754
No 127
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=66.35 E-value=1.2 Score=33.08 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=24.6
Q ss_pred ccCCCCCceeeecCCcCeEEecCCc-ccccccccccC
Q 043604 199 ARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISL 234 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~ 234 (268)
-.||-|...+..- ++..||+ ||..|...|-.
T Consensus 32 ~~C~IC~~~~~~p-----v~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 32 YLCSACRNVLRRP-----FQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHGG
T ss_pred cCCCCCChhhcCc-----EECCCCCccCHHHHHHHHh
Confidence 5899999877532 5656999 99999998854
No 128
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=66.02 E-value=0.56 Score=33.60 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=24.3
Q ss_pred ccCCCCCceeeecCCcCeEEecCCc-ccccccccccCC
Q 043604 199 ARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLR 235 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~ 235 (268)
..||-|...+.. -++-.||+ ||+.|...|-..
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 51 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIRD 51 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHHHhh
Confidence 589999987763 25546999 999999887543
No 129
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=65.08 E-value=1.5 Score=31.51 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=23.8
Q ss_pred ccCCCCCceeeecCCcCeEEecCCc-ccccccccccC
Q 043604 199 ARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISL 234 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~ 234 (268)
-.||-|...+. +-++=.||| ||..|...|-.
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHHHh
Confidence 47999988776 234446999 99999988764
No 130
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=64.53 E-value=2.4 Score=29.11 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=43.0
Q ss_pred CeeeCcccccccccccccccCCCCCc-chhhcccchhhHHHHHHHHhCCcccCCCC-CceeeecCCcCeEEec-CCc-cc
Q 043604 150 KKARCPNCTQWFCFQCKLAWHAGYRC-EESGNLRDWNDIAFGKLVERMHWARCPAC-GSCVERKEGCRVMYCS-CHS-VT 225 (268)
Q Consensus 150 ~~~~C~~C~~~~C~~C~~~~H~~~tC-~~~~~~~~~~~~~~~~~~~~~~~k~CP~C-~~~iek~~GCnhm~C~-C~~-FC 225 (268)
....|..|+..||..|...+|....- ..........+ .......|+.. +..++ +.|. |+. .|
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~-------~~~~~~~C~~H~~e~l~-------~fC~~~~~~iC 82 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPD-------SHIRGLMCLEHEDEKVN-------MYCVTDDQLIC 82 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCS-------CCSSCCCCSSCSSSCCC-------EEETTTTEEEC
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccc-------cCccCCcCcCcCCCcce-------EECCCCCCccc
Confidence 45679999999999999987763211 11110000000 01123578888 46676 8998 999 99
Q ss_pred cccccc
Q 043604 226 YSRAKH 231 (268)
Q Consensus 226 ~~C~~~ 231 (268)
+.|...
T Consensus 83 ~~C~~~ 88 (101)
T 2jun_A 83 ALCKLV 88 (101)
T ss_dssp HHHHHH
T ss_pred hhcCCC
Confidence 999753
No 131
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=64.12 E-value=1.4 Score=31.63 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=0.0
Q ss_pred CCcCeEEecCCc-ccccccccccCCCCCCCCCCCCC
Q 043604 212 EGCRVMYCSCHS-VTYSRAKHISLRKHSTRGDNKGW 246 (268)
Q Consensus 212 ~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~~~~~ 246 (268)
+.|.-+.-.|++ |+..|...|-..+..|+.-...|
T Consensus 75 ~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 75 EECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ------------------------------------
T ss_pred cccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 445556667999 99999999977655555444444
No 132
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=63.00 E-value=2.4 Score=26.86 Aligned_cols=35 Identities=23% Similarity=0.574 Sum_probs=27.5
Q ss_pred CCCcccccccccCCcCCcCccccCCC-CChhhHHHHHHHHH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLC-SHHFCQDCIAKYIE 73 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~Cl~~~~~ 73 (268)
+.+...|.||.++-. + .-+.| +..||..||+..-.
T Consensus 5 ~ee~pWC~ICneDAt----l-rC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT----L-RCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCCSSCTTTCSCCC----E-EETTTTSEEECSSHHHHHTT
T ss_pred CcCCCeeEEeCCCCe----E-EecCCCCceehHHHHHHHcc
Confidence 345678999999852 3 36789 78999999999873
No 133
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=62.52 E-value=5.1 Score=24.74 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=15.5
Q ss_pred cccCCCCCc-eeeecCCcCeEEec-CCc
Q 043604 198 WARCPACGS-CVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 198 ~k~CP~C~~-~iek~~GCnhm~C~-C~~ 223 (268)
...||.|+. .|..+..=.-+.|. ||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 458999976 45544433446664 553
No 134
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=61.73 E-value=3.9 Score=27.40 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=27.8
Q ss_pred CCcccCCCCCceeeecCCcCeEEecCCc-ccccccccccCCCCCCCCC
Q 043604 196 MHWARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLRKHSTRGD 242 (268)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~ 242 (268)
....+|..|+..+-.. +-+.|+||. ||-.- -....|.|.++
T Consensus 23 ~~~~rC~~C~kkvgl~---~~f~CrCg~~FC~~H---Ry~e~H~C~fD 64 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLA---TSFECRCGNNFCASH---RYAEAHGCNYD 64 (85)
T ss_dssp CCCCBCSSSCCBCSSS---SCEECTTCCEECTTT---CSTGGGTCCSC
T ss_pred ccCccchhhCCeeccc---CCeEcCCCCEecccC---CCccCCCCcch
Confidence 3447899999877654 238999999 98543 22345666654
No 135
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=61.27 E-value=5.3 Score=28.31 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=24.1
Q ss_pred cccCCccccCceeeeccccccCCcCeeeCccccccc
Q 043604 126 RSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWF 161 (268)
Q Consensus 126 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (268)
..+|| .|++++.+..... .....+.|+.|++.+
T Consensus 4 m~FCp--~Cgn~L~~~~~~~-~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDKV-DRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCTT-TCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccCC-CCeeEEECCCCCCeE
Confidence 57898 9999998876431 124578899888755
No 136
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=60.97 E-value=4.7 Score=26.65 Aligned_cols=31 Identities=16% Similarity=0.464 Sum_probs=24.9
Q ss_pred ccCCccccCceeeeccccccCCcCeeeCccccccccc
Q 043604 127 SYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCF 163 (268)
Q Consensus 127 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (268)
+.|| +|.+.-.+-... ...+.|..|+...|.
T Consensus 33 VkCp--~C~n~q~VFShA----~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSNA----QSTIICEKCSAILCK 63 (81)
T ss_dssp EECS--SSCCEEEEETTC----SSCEECSSSCCEEEE
T ss_pred eECC--CCCCeeEEEecC----ccEEEccCCCCEEee
Confidence 6899 999887776654 578999999988775
No 137
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=60.72 E-value=3.7 Score=29.58 Aligned_cols=34 Identities=12% Similarity=0.315 Sum_probs=24.4
Q ss_pred CcccCCccccCceeeeccccccCCcCeeeCccccccc
Q 043604 125 ERSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWF 161 (268)
Q Consensus 125 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (268)
.+.+|| .|++++.+..... .....+.|+.|++..
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~-~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKE-NNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETT-TTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCc-CCCCEEECCcCCCee
Confidence 468999 9999998775411 124678999998755
No 138
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=60.43 E-value=4 Score=28.67 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=23.7
Q ss_pred ccCCCCCceeeecCCcCeEEecCCc-ccccccccccCC
Q 043604 199 ARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISLR 235 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~~ 235 (268)
-.||-|...+.. -++=.||| ||..|...|-..
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 48 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEK 48 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCT
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhH
Confidence 379999877653 23326999 999999988754
No 139
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=60.25 E-value=4.6 Score=31.15 Aligned_cols=23 Identities=26% Similarity=0.736 Sum_probs=20.6
Q ss_pred ccCCCCCceeeecCCcCeEEec-CCc
Q 043604 199 ARCPACGSCVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (268)
-.|++|+.++.+.+ ++|.|. ||.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCC
T ss_pred ecccccCCceEECC--CEEECCCCCC
Confidence 58999999999877 999997 986
No 140
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=60.12 E-value=3.6 Score=28.81 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=24.4
Q ss_pred CCcCeEEecCCc-ccccccccccCCCCCCCCCCCCCc
Q 043604 212 EGCRVMYCSCHS-VTYSRAKHISLRKHSTRGDNKGWR 247 (268)
Q Consensus 212 ~GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~~~~~~ 247 (268)
++|.-+.=.|+| |+..|...|-..+..|+.-...|.
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred ccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 345555556999 999999999776655655444443
No 141
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=58.97 E-value=2.7 Score=27.19 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=13.2
Q ss_pred ccCCCCCceeeecCCcCeEEec-CC
Q 043604 199 ARCPACGSCVERKEGCRVMYCS-CH 222 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~ 222 (268)
-.|+.|+..++...+ +-+.|+ ||
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG 52 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCG 52 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSC
T ss_pred EECCCCCCcceeCCC-CCccCCCCC
Confidence 467777777666533 334454 54
No 142
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=58.32 E-value=6.2 Score=26.38 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=26.8
Q ss_pred ccCCccccCceeeeccccccCCcCeeeCccccccccccccc
Q 043604 127 SYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCFQCKL 167 (268)
Q Consensus 127 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 167 (268)
+.|| +|.+.-.+-... ...+.|..|+...|.-=+.
T Consensus 37 VkCp--~C~~~~~VFShA----~t~V~C~~CgtvL~~PTGG 71 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSHS----QTVVVCPGCQTVLCQPTGG 71 (86)
T ss_dssp EECT--TTCCEEEEETTC----SSCCCCSSSCCCCSCCCSS
T ss_pred EECC--CCCCeeEEEecC----CcEEEccCCCCEeecCCCC
Confidence 7899 999887776654 5789999999988764333
No 143
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.57 E-value=6.9 Score=26.38 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=24.1
Q ss_pred CcccCCCCCceeeecCCcCeEEec-CCc-cccccccc
Q 043604 197 HWARCPACGSCVERKEGCRVMYCS-CHS-VTYSRAKH 231 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~-FC~~C~~~ 231 (268)
....|..|+...... =..-.|+ ||. ||..|...
T Consensus 8 ~~~~C~~C~~~F~~~--~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLF--KKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSS--SCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCc--cccccCCCCCCEEChhHcCC
Confidence 346788888865422 2446798 999 99999865
No 144
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=57.50 E-value=2.1 Score=32.53 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=24.9
Q ss_pred ccCCCCCceeeecCCcCeEEecCCc-ccccccccccC
Q 043604 199 ARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISL 234 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~ 234 (268)
-.||-|..++.. -+++.||+ ||..|...|-.
T Consensus 19 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEECCCCCHHHHHHHHHHHH
Confidence 589999988763 36667999 99999988753
No 145
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=57.45 E-value=6.4 Score=26.40 Aligned_cols=28 Identities=25% Similarity=0.653 Sum_probs=21.5
Q ss_pred CcccCCCCCce------eeecCCcCeEEec-CCc-c
Q 043604 197 HWARCPACGSC------VERKEGCRVMYCS-CHS-V 224 (268)
Q Consensus 197 ~~k~CP~C~~~------iek~~GCnhm~C~-C~~-F 224 (268)
..-.||.|+.. |.|..|=-++.|+ |+. |
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 34689999875 4456788889997 988 7
No 146
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=54.72 E-value=10 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.760 Sum_probs=15.9
Q ss_pred CcccCCCCCceeeecCCcCeEEec
Q 043604 197 HWARCPACGSCVERKEGCRVMYCS 220 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~ 220 (268)
..-.||.|+..++-.+ ..+.|.
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~ 30 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICT 30 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEEC
T ss_pred hheeCCCCCCcceecC--CEEEcC
Confidence 3468999999988777 445553
No 147
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=53.57 E-value=8 Score=26.59 Aligned_cols=17 Identities=18% Similarity=0.821 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHhhc
Q 043604 62 HFCQDCIAKYIEAKVQD 78 (268)
Q Consensus 62 ~fC~~Cl~~~~~~~i~~ 78 (268)
-||++||..|+.....+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 48999999999988876
No 148
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=53.46 E-value=3.9 Score=25.44 Aligned_cols=36 Identities=22% Similarity=0.659 Sum_probs=25.4
Q ss_pred cCCccccCceeeeccccccCCcCeeeCcccccccccccccccCCCC
Q 043604 128 YCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCFQCKLAWHAGY 173 (268)
Q Consensus 128 ~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~ 173 (268)
.|- .|...+.. ...+.|+.|+..||..|..-.|..+
T Consensus 17 ~C~--~C~~~~~~--------~~~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 17 FCY--GCQGELKD--------QHVYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp EET--TTTEECTT--------SEEECCTTTTCCBCHHHHHTTTTTS
T ss_pred ccc--ccCcccCC--------CccEECCccCcCcccchhHHHHhhc
Confidence 454 67766621 1247799999999999988777543
No 149
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=52.98 E-value=8.4 Score=25.69 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=21.7
Q ss_pred CcccCCccccCceeeeccccccCCcCeeeCccccccc
Q 043604 125 ERSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWF 161 (268)
Q Consensus 125 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (268)
....|| .|+......... ....|+.|+..|
T Consensus 26 ~~y~Cp--~CG~~~v~r~at-----GiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 26 EDHACP--NCGEDRVDRQGT-----GIWQCSYCDYKF 55 (83)
T ss_dssp SCEECS--SSCCEEEEEEET-----TEEEETTTCCEE
T ss_pred ccCcCC--CCCCcceeccCC-----CeEECCCCCCEe
Confidence 357888 898866555443 678899888876
No 150
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.70 E-value=4.7 Score=26.76 Aligned_cols=36 Identities=22% Similarity=0.576 Sum_probs=24.7
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAK 70 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 70 (268)
.....|.+|...|.....----..||..||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445679999998854322112456999999998764
No 151
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=51.43 E-value=7.5 Score=22.79 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=19.6
Q ss_pred ccCceeeeccccccCCcCeeeCcccccccc
Q 043604 133 NCMALVVNGCEINYGTLKKARCPNCTQWFC 162 (268)
Q Consensus 133 ~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C 162 (268)
.|+..+..++.. ..+.++||.||+..=
T Consensus 8 rCg~~fs~~el~---~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 8 KCWKTFTDEQLK---VLPGVRCPYCGYKII 34 (48)
T ss_dssp CTTTTCCCCCSC---CCSSSCCTTTCCSCE
T ss_pred ccCCCccHHHHh---hCCCcccCccCcEEE
Confidence 677777666554 467889999998653
No 152
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=51.21 E-value=8.4 Score=24.88 Aligned_cols=23 Identities=35% Similarity=0.949 Sum_probs=11.9
Q ss_pred cCCCCCceeeecCCcCeEEecCCc
Q 043604 200 RCPACGSCVERKEGCRVMYCSCHS 223 (268)
Q Consensus 200 ~CP~C~~~iek~~GCnhm~C~C~~ 223 (268)
.|| |+...--.+|=..-.|+||.
T Consensus 6 ~C~-C~~~~~~~~~~kT~~C~CG~ 28 (71)
T 1gh9_A 6 RCD-CGRALYSREGAKTRKCVCGR 28 (71)
T ss_dssp EET-TSCCEEEETTCSEEEETTTE
T ss_pred ECC-CCCEEEEcCCCcEEECCCCC
Confidence 455 55555555555555555443
No 153
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=50.88 E-value=6.9 Score=29.33 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=22.8
Q ss_pred cccCCccccCceeeeccccccCCcCeeeCccccccccc
Q 043604 126 RSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCF 163 (268)
Q Consensus 126 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (268)
+..||++.|+..+....-. ....|-.|+..+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~-----~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHK-----DRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECS-----SCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccC-----CCcccCCCceEEEe
Confidence 4789988898744333222 46789889888765
No 154
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=50.60 E-value=5.2 Score=26.51 Aligned_cols=31 Identities=19% Similarity=0.623 Sum_probs=24.4
Q ss_pred ccCCccccCceeeeccccccCCcCeeeCccccccccc
Q 043604 127 SYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCF 163 (268)
Q Consensus 127 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (268)
+.|| +|.+.-.+-... ...+.|..|+...|.
T Consensus 35 VkCp--~C~~~q~VFSha----~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCP--GCLNITTVFSHA----QTAVTCESCSTILCT 65 (82)
T ss_dssp EECT--TSCSCEEEESBC----SSCCCCSSSCCCCEE
T ss_pred EECC--CCCCeeEEEecC----CeEEEccccCCEEec
Confidence 7898 899877766554 578899999988775
No 155
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=49.95 E-value=12 Score=23.61 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=24.5
Q ss_pred ccCCccccCceeeeccccccCCcCeeeCccccccccc
Q 043604 127 SYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCF 163 (268)
Q Consensus 127 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (268)
+.|| +|.+.-..-... ...+.|..|+...|.
T Consensus 8 VKCp--~C~niq~VFShA----~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIFDHP----STIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEESSC----SSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEEecC----ceEEEcccCCCEEee
Confidence 6788 999887766654 578999999988865
No 156
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=49.80 E-value=5.9 Score=26.37 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAK 70 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 70 (268)
.....|.+|...|.....----..||..||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 445689999998854322112456899999998754
No 157
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=48.75 E-value=8.5 Score=28.82 Aligned_cols=29 Identities=31% Similarity=0.672 Sum_probs=22.1
Q ss_pred cccCCC--CCceeeecCCcCeEEec-CCc-ccc
Q 043604 198 WARCPA--CGSCVERKEGCRVMYCS-CHS-VTY 226 (268)
Q Consensus 198 ~k~CP~--C~~~iek~~GCnhm~C~-C~~-FC~ 226 (268)
-+.||+ |+.-+.-..-=+..+|. |++ +++
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 478999 99866555444688997 999 876
No 158
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=46.93 E-value=8.6 Score=26.40 Aligned_cols=17 Identities=29% Similarity=0.976 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHhhc
Q 043604 62 HFCQDCIAKYIEAKVQD 78 (268)
Q Consensus 62 ~fC~~Cl~~~~~~~i~~ 78 (268)
-||++||..|+.....+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 49999999999987766
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.10 E-value=11 Score=29.93 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=24.2
Q ss_pred ccCCCCCceeeecCCcCeEEec-CCc-cccccccccc
Q 043604 199 ARCPACGSCVERKEGCRVMYCS-CHS-VTYSRAKHIS 233 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~ 233 (268)
..|+.|+...- --=..-.|+ ||. ||..|.....
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECTTTCCEECSTTSCEEE
T ss_pred CccCCCCCccC--CcccccccCCcCCEEChHHhCCee
Confidence 58999987653 223457898 999 9999987543
No 160
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.79 E-value=18 Score=22.69 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=24.3
Q ss_pred ccCCccccCceeeeccccccCCcCeeeCccccccccc
Q 043604 127 SYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCF 163 (268)
Q Consensus 127 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 163 (268)
+.|| +|.+.-..-... ...+.|..|+...|.
T Consensus 16 VkCp--~C~~~q~VFSha----~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFSHP----ATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEESSC----SSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEecC----CeEEEccCcCCEEec
Confidence 7898 999887765554 578999999988765
No 161
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=43.76 E-value=18 Score=19.84 Aligned_cols=24 Identities=21% Similarity=0.697 Sum_probs=17.5
Q ss_pred cCCCCCce---eeecCCcCeEEec-CCc
Q 043604 200 RCPACGSC---VERKEGCRVMYCS-CHS 223 (268)
Q Consensus 200 ~CP~C~~~---iek~~GCnhm~C~-C~~ 223 (268)
.||.|+.+ +.+..+=-.+.|. ||+
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 58888874 5555677778887 886
No 162
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.21 E-value=7.9 Score=25.71 Aligned_cols=36 Identities=28% Similarity=0.536 Sum_probs=23.7
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAK 70 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 70 (268)
.....|.+|...|.....----..||..||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345679999998854321112346899999998543
No 163
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=42.48 E-value=12 Score=29.08 Aligned_cols=28 Identities=36% Similarity=0.762 Sum_probs=20.1
Q ss_pred cccCCCCCce-eeecCCcCeEEec-CCc-ccc
Q 043604 198 WARCPACGSC-VERKEGCRVMYCS-CHS-VTY 226 (268)
Q Consensus 198 ~k~CP~C~~~-iek~~GCnhm~C~-C~~-FC~ 226 (268)
.+.||+|+.. +.....+.| +|. |++ |.|
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 4899999965 344455555 996 999 865
No 164
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=42.33 E-value=6.8 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=24.2
Q ss_pred cccccccccCCcCCcCccccCCCCChhhHHHHHHH
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKY 71 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 71 (268)
...|.+|...|.....-..-..||..||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45799999888543221134579999999997654
No 165
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.13 E-value=12 Score=23.89 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=25.6
Q ss_pred CcccCCCCCceeeecC--CcCeEEecCCc-ccccccccccCCCCCCCCC
Q 043604 197 HWARCPACGSCVERKE--GCRVMYCSCHS-VTYSRAKHISLRKHSTRGD 242 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~--GCnhm~C~C~~-FC~~C~~~~~~~~~~~~~~ 242 (268)
...+|-.|+..+...+ | +.|+|+. ||-.- -....|.|.++
T Consensus 14 ~~~rC~~C~kk~gL~~~eg---f~CrCg~~FC~~H---Ry~e~H~C~fD 56 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQEL---GSCRCGYVFCMLH---RLPEQHDCTFD 56 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHH---HCCSSSCCCCTTT---CSTGGGTCSSC
T ss_pred cCCcchhhCCeecccccCc---eEecCCCEehhcc---CCccccCCccc
Confidence 3468888988876431 1 4689999 98643 22335666655
No 166
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.83 E-value=6.9 Score=28.27 Aligned_cols=35 Identities=26% Similarity=0.568 Sum_probs=24.0
Q ss_pred cccccccccCCcCCcCccccCCCCChhhHHHHHHH
Q 043604 37 IFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKY 71 (268)
Q Consensus 37 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 71 (268)
...|.+|...|.....-.--..||+.||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45799999988543211134569999999997654
No 167
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.82 E-value=7.6 Score=25.04 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=22.6
Q ss_pred ccccccccCCcCCcCccccCCCCChhhHHHHHH
Q 043604 38 FTCEICIEPISANDKFRNKDLCSHHFCQDCIAK 70 (268)
Q Consensus 38 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 70 (268)
..|.+|...|.....----..||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 379999988854322112346899999999753
No 168
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.50 E-value=15 Score=23.07 Aligned_cols=39 Identities=15% Similarity=0.463 Sum_probs=25.8
Q ss_pred CCCcccccccccCCcCCcCccccC-CCCChhhHHHHHHHH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKD-LCSHHFCQDCIAKYI 72 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~ 72 (268)
+.+...|.+|..++.+.+.++.-. .|.-.|...|+.--.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~ 44 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTE 44 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCH
Confidence 355678999999875554444455 788889999986543
No 169
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=39.88 E-value=35 Score=24.08 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=27.4
Q ss_pred ChhHHHHHHHHHHhhh-hcC---------CCcccCCccccCceeeeccccccCCcCee-eCccccc
Q 043604 105 PSNLFSKWCDVLFEDY-VLG---------FERSYCPNRNCMALVVNGCEINYGTLKKA-RCPNCTQ 159 (268)
Q Consensus 105 ~~~~~~~~~~~~~~~~-~~~---------~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~-~C~~C~~ 159 (268)
.++.+......+.+.. +.. +-..+|. +|+..+.... ... .||.|+.
T Consensus 42 ~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~--~CG~~~e~~~-------~~~~~CP~Cgs 98 (119)
T 2kdx_A 42 DKSLFVSAFETFREESLVCKDAILDIVDEKVELECK--DCSHVFKPNA-------LDYGVCEKCHS 98 (119)
T ss_dssp CHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECS--SSSCEECSCC-------STTCCCSSSSS
T ss_pred cHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcC--CCCCEEeCCC-------CCCCcCccccC
Confidence 4556655555555544 322 3457888 8988876632 234 6888764
No 170
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.80 E-value=5.5 Score=29.94 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=22.9
Q ss_pred CcccccccccCCcCCc-CccccCCCCChhhHHHH
Q 043604 36 GIFTCEICIEPISAND-KFRNKDLCSHHFCQDCI 68 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~-~~~~~~~C~H~fC~~Cl 68 (268)
....|.+|..++.... .-..-..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4678999999863321 11235579999999886
No 171
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=39.26 E-value=21 Score=31.12 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=26.7
Q ss_pred CcccCCCCCceeeecCCcCeEEecCCc-ccccccccccC-CCCCCCC
Q 043604 197 HWARCPACGSCVERKEGCRVMYCSCHS-VTYSRAKHISL-RKHSTRG 241 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~C~~-FC~~C~~~~~~-~~~~~~~ 241 (268)
....||-|...... -+.=.||| ||+.|...|.. ....|+.
T Consensus 331 ~~~~C~ICle~~~~-----pv~lpCGH~FC~~Ci~~wl~~~~~~CP~ 372 (389)
T 2y1n_A 331 TFQLCKICAENDKD-----VKIEPCGHLMCTSCLTSWQESEGQGCPF 372 (389)
T ss_dssp SSSBCTTTSSSBCC-----EEEETTCCEECHHHHHHHHHHTCSBCTT
T ss_pred CCCCCCccCcCCCC-----eEEeCCCChhhHHHHHHHHhcCCCCCCC
Confidence 34789999776632 23334999 99999998865 3344443
No 172
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=39.05 E-value=10 Score=23.82 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=10.5
Q ss_pred ccCCCCCceeeecCCcCeEEec-CCc
Q 043604 199 ARCPACGSCVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 199 k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (268)
-.|..|+..++...+ .-|.|+ ||+
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~~CG~ 46 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCRECGH 46 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCSSSCC
T ss_pred EECCCCCCeeecCCC-CceECCCCCc
Confidence 345555554443332 334444 443
No 173
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=37.78 E-value=21 Score=19.76 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=21.1
Q ss_pred cCeeeCccccccccccccc-ccCCCCC
Q 043604 149 LKKARCPNCTQWFCFQCKL-AWHAGYR 174 (268)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~-~~H~~~t 174 (268)
...+.|..++..+|..|.. ..|.+++
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 38 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHN 38 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCc
Confidence 3567899999999999987 6787653
No 174
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=37.56 E-value=16 Score=27.13 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=19.0
Q ss_pred cccCCcccc-C------ceeeeccccccCCcCeeeCccccccc
Q 043604 126 RSYCPNRNC-M------ALVVNGCEINYGTLKKARCPNCTQWF 161 (268)
Q Consensus 126 ~~~Cp~~~C-~------~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (268)
...||||+| . ..+...... ...++|..|...+
T Consensus 105 vl~C~Np~CITn~E~v~s~F~v~~~~----~~~lrC~YCe~~~ 143 (149)
T 2yww_A 105 TLKCTNPNCITNKEKVRGKFKIESKN----PLKIRCYYCEKFL 143 (149)
T ss_dssp SSCCSCTTSGGGTSCCCCEEEEEEET----TEEEEETTTCCBC
T ss_pred eEEcCCCCCCcCCcccccEEEEEeCC----CCEEEeeCCCcCh
Confidence 478999999 3 222221111 2457888887654
No 175
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=36.51 E-value=11 Score=21.94 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.1
Q ss_pred cCeeeCcccccccccccccccCCCCC
Q 043604 149 LKKARCPNCTQWFCFQCKLAWHAGYR 174 (268)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~~~H~~~t 174 (268)
...+.|..|+..+|..|....|.+++
T Consensus 16 ~l~lfC~~~~~~iC~~C~~~~H~~H~ 41 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQLNAHKDHQ 41 (50)
T ss_dssp BCCEEETTTTEEECHHHHHTTTTTCC
T ss_pred CEEEEeCCCCEEEecccCCCcCCCCc
Confidence 46789999999999999887888764
No 176
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=35.88 E-value=21 Score=25.87 Aligned_cols=26 Identities=27% Similarity=0.718 Sum_probs=20.5
Q ss_pred cccCCCCCceeeecCCcCeEEec-CCc-c
Q 043604 198 WARCPACGSCVERKEGCRVMYCS-CHS-V 224 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~-F 224 (268)
.-.||+|+.-..-.+|=. +.|. |++ |
T Consensus 27 lP~CP~C~seytYeDg~l-~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGAL-LVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSS-EEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCe-EECCcccccc
Confidence 579999999887777754 7787 887 7
No 177
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=35.56 E-value=18 Score=29.83 Aligned_cols=24 Identities=25% Similarity=0.935 Sum_probs=18.2
Q ss_pred ccCCCCCceeeec--CCcCeEEec-CC
Q 043604 199 ARCPACGSCVERK--EGCRVMYCS-CH 222 (268)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (268)
++||.|+.+|++. +|=.-..|. |.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7899999999988 665555564 53
No 178
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=34.93 E-value=17 Score=30.00 Aligned_cols=24 Identities=33% Similarity=0.966 Sum_probs=18.1
Q ss_pred ccCCCCCceeeec--CCcCeEEec-CC
Q 043604 199 ARCPACGSCVERK--EGCRVMYCS-CH 222 (268)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (268)
++||.|+.+|++. +|=+--.|. |.
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 6999999999986 665555564 53
No 179
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.73 E-value=38 Score=24.24 Aligned_cols=35 Identities=23% Similarity=0.607 Sum_probs=25.8
Q ss_pred CcccCCccccCceeeeccccccCCcCeeeCcccccccccccccc
Q 043604 125 ERSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCFQCKLA 168 (268)
Q Consensus 125 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 168 (268)
+...|. .|+..+... .....|..||..||..|-..
T Consensus 68 ~~~~C~--~C~~~Fs~~-------~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCM--ACGKGFSVT-------VRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCT--TTCCBCCSS-------SCCEECTTTCCEECGGGSCE
T ss_pred CCCCCc--CcCCccccc-------cccccCCCCCeEEChHHhCC
Confidence 346787 788766532 25577999999999999764
No 180
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.12 E-value=20 Score=29.39 Aligned_cols=22 Identities=45% Similarity=1.025 Sum_probs=16.5
Q ss_pred ccCCCCCceeeec--CCcCeEEec
Q 043604 199 ARCPACGSCVERK--EGCRVMYCS 220 (268)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~ 220 (268)
++||.|+.+|++. +|=+--.|.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP 259 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCP 259 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECT
T ss_pred CCCCCCCCEeeEEEECCCceEECC
Confidence 7899999999988 554444454
No 181
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.87 E-value=20 Score=29.54 Aligned_cols=24 Identities=25% Similarity=0.786 Sum_probs=18.3
Q ss_pred ccCCCCCceeeec--CCcCeEEec-CC
Q 043604 199 ARCPACGSCVERK--EGCRVMYCS-CH 222 (268)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (268)
++||.|+.+|++. +|=+--.|. |.
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7899999999988 665555564 53
No 182
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=33.43 E-value=20 Score=29.34 Aligned_cols=24 Identities=29% Similarity=0.893 Sum_probs=18.5
Q ss_pred ccCCCCCceeeec--CCcCeEEec-CC
Q 043604 199 ARCPACGSCVERK--EGCRVMYCS-CH 222 (268)
Q Consensus 199 k~CP~C~~~iek~--~GCnhm~C~-C~ 222 (268)
++||.|+.+|++. +|=.-..|. |.
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 5899999999988 665556665 64
No 183
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=32.80 E-value=34 Score=22.83 Aligned_cols=33 Identities=21% Similarity=0.648 Sum_probs=25.8
Q ss_pred cccCCccccCceeeeccccccCCcCeeeCcccccccccccccc
Q 043604 126 RSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCFQCKLA 168 (268)
Q Consensus 126 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 168 (268)
...|..++|..... ..+.|..|+..||..-+.+
T Consensus 25 ~~~C~~~~Ck~~~~----------l~f~C~~C~~~FC~~HR~~ 57 (86)
T 1wfe_A 25 SYSCSFKGCTDVEL----------VAVICPYCEKNFCLRHRHQ 57 (86)
T ss_dssp CEECCSTTCCCEES----------SCEECTTTCCEECGGGCST
T ss_pred CCCCCCcCCCCCCc----------cceECCCCCcccccccCCc
Confidence 46788888988731 3568999999999988864
No 184
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=31.90 E-value=21 Score=26.70 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=19.0
Q ss_pred CcccCCcccc-C------ceeeeccccccCCcCeeeCccccccc
Q 043604 125 ERSYCPNRNC-M------ALVVNGCEINYGTLKKARCPNCTQWF 161 (268)
Q Consensus 125 ~~~~Cp~~~C-~------~~~~~~~~~~~~~~~~~~C~~C~~~~ 161 (268)
+...||||+| . ..+...... ....++|..|...+
T Consensus 104 gv~~C~Np~CITn~E~v~s~F~v~~~~---~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 104 NVFPCPNSNCITHGEPVTSSFSIKKTK---GNIGLKCKYCEKTF 144 (153)
T ss_dssp SSSCCSCTTCTTSSSSCCCCEEEEEET---TEEEEEETTTCCEE
T ss_pred CeEEcCCCCCCcCCcccccEEEEeecC---CCCEEEeeCCCCEe
Confidence 4578999999 3 122221110 02457888777654
No 185
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=31.80 E-value=28 Score=21.54 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=17.5
Q ss_pred hhcCCCcccCCccccCceeeeccccccCCcCeeeCccccc
Q 043604 120 YVLGFERSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQ 159 (268)
Q Consensus 120 ~~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~ 159 (268)
.+..+.+..|| .|+.+..+. ..|+.||+
T Consensus 24 kl~~p~l~~c~--~cGe~~~~H----------~vc~~CG~ 51 (60)
T 3v2d_5 24 ALTPPTLVPCP--ECKAMKPPH----------TVCPECGY 51 (60)
T ss_dssp CCCCCCCEECT--TTCCEECTT----------SCCTTTCE
T ss_pred cccCCceeECC--CCCCeecce----------EEcCCCCc
Confidence 34456778888 687765432 33777764
No 186
>4fyy_B Aspartate carbamoyltransferase regulatory chain; pyrimidine nucleotide biosynthesis, feedback inhibition, all transferase; HET: UTP CTP; 1.94A {Escherichia coli} PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G* 1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B* 1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B 1tug_B* 1xjw_B* ...
Probab=30.28 E-value=27 Score=26.08 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=19.8
Q ss_pred CcccCCccccCceeeecccc----ccCCcCeeeCccccccc
Q 043604 125 ERSYCPNRNCMALVVNGCEI----NYGTLKKARCPNCTQWF 161 (268)
Q Consensus 125 ~~~~Cp~~~C~~~~~~~~~~----~~~~~~~~~C~~C~~~~ 161 (268)
+...||||+|-.-..+.... .......++|..|...|
T Consensus 105 gvi~C~Np~CIT~~E~v~~~f~v~~~~~~~~~rC~YCe~~~ 145 (153)
T 4fyy_B 105 NVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEF 145 (153)
T ss_dssp SSCCCSCTTBTTTTSSCCCEEEEEECSSSEEEEETTTCCEE
T ss_pred CeEECCCCCcccCCCCCCCEEEEEEcCCCCEEEeeCCCCEe
Confidence 45799999996432110000 00012457888877654
No 187
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=29.78 E-value=31 Score=26.16 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=18.7
Q ss_pred CcccCCcccc-Cce-------eeeccccccCCcCeeeCccccccc
Q 043604 125 ERSYCPNRNC-MAL-------VVNGCEINYGTLKKARCPNCTQWF 161 (268)
Q Consensus 125 ~~~~Cp~~~C-~~~-------~~~~~~~~~~~~~~~~C~~C~~~~ 161 (268)
+...||||+| ... +..... ....++|..|...+
T Consensus 113 gvl~C~Np~CITn~~~Epvs~F~v~~~----~~~~lrC~YCe~~~ 153 (168)
T 1pg5_B 113 GILKCPNPYCITSNDVEAIPTFKTLTE----KPLKMRCEYCETII 153 (168)
T ss_dssp SSSCCSCTTBGGGTCTTSCCEEEEEET----TTTEEEETTTCCEE
T ss_pred CeEEcCCCCcccCCCCccccEEEEEcC----CCCEEEeeCCCCEe
Confidence 3578999999 311 111111 13567888776654
No 188
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=29.09 E-value=31 Score=20.21 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=24.5
Q ss_pred cccCCCCCceeeecCCcCeEEec-CCc-ccccccccccCCCC
Q 043604 198 WARCPACGSCVERKEGCRVMYCS-CHS-VTYSRAKHISLRKH 237 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~~~~~ 237 (268)
-..|+.-+..++ +.|. |+. .|+.|...-....|
T Consensus 8 ~~~C~~H~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H 42 (53)
T 2did_A 8 ESLCPQHHEALS-------LFCYEDQEAVCLICAISHTHRAH 42 (53)
T ss_dssp CCBCTTTCCBCC-------EEESSSCSEECHHHHTSSTTTTS
T ss_pred CCcChhhCCeee-------EEeCCCCeEEeccccCCCCCCCC
Confidence 357888887777 9998 999 99999764433333
No 189
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.09 E-value=31 Score=22.38 Aligned_cols=58 Identities=24% Similarity=0.561 Sum_probs=36.7
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHHHHhhcCCCceeccCCCCCCCCCCH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIEAKVQDNNTAKIECPGVHCDQFLDP 97 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~i~~ 97 (268)
+.....| ||-........++.-..|...|...|+.-...... ....+.||. |......
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~---~~~~~~C~~--C~~~~~~ 66 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAV---DIDIYHCPD--CEAVFGP 66 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHT---TCSBBCCTT--TTTTSCS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccccccc---CCCeEECCC--cccccCC
Confidence 3456778 89877643334445557888999999865433321 234688988 8765443
No 190
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.07 E-value=16 Score=22.55 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=25.5
Q ss_pred cccCCCCCceeeecCCcCeEEec-CCc-ccccccccccC
Q 043604 198 WARCPACGSCVERKEGCRVMYCS-CHS-VTYSRAKHISL 234 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~~ 234 (268)
...|+-|..- .-.+|+-|. |. |.. ||-+||..+..
T Consensus 9 ~~~C~iC~KT-KFADG~Gh~-C~yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 9 APTCGICHKT-KFADGCGHN-CSYCQTKFCARCGGRVSL 45 (62)
T ss_dssp CCCCSSSSCS-CCCSSCCEE-BTTTCCEECTTSEEEEES
T ss_pred cchhhhhccc-eeccCCCcc-ccccCCeeecccCCEeee
Confidence 3467766543 224788886 65 999 99999998875
No 191
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.62 E-value=28 Score=21.76 Aligned_cols=40 Identities=20% Similarity=0.573 Sum_probs=28.0
Q ss_pred cccCCccccCceeeeccccccCCcCeeeCcccccccccccccccCCCCCcch
Q 043604 126 RSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQWFCFQCKLAWHAGYRCEE 177 (268)
Q Consensus 126 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~tC~~ 177 (268)
...|..++|.... ...+.|..|+..||..-+.+ ..+.|..
T Consensus 12 ~~~Cs~~~Ck~~~----------ll~f~C~~C~~~FC~~HR~~--e~H~C~~ 51 (63)
T 1x4v_A 12 TNKCERAGCRQRE----------MMKLTCERCSRNFCIKHRHP--LDHDCSG 51 (63)
T ss_dssp CCCCCSTTCCCCC----------SSCCBCSSSCCBCCHHHHST--TSSCCCS
T ss_pred CCCCCccCCCCCC----------ccceECCCCCcccCcccCCc--cCCcCCC
Confidence 4678888888762 13467999999999987753 2335654
No 192
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=28.09 E-value=33 Score=21.17 Aligned_cols=28 Identities=25% Similarity=0.672 Sum_probs=16.8
Q ss_pred hcCCCcccCCccccCceeeeccccccCCcCeeeCcccccc
Q 043604 121 VLGFERSYCPNRNCMALVVNGCEINYGTLKKARCPNCTQW 160 (268)
Q Consensus 121 ~~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~ 160 (268)
+..+.++.|| .|+.... +...|+.||++
T Consensus 25 l~~p~l~~c~--~cG~~~~----------pH~vc~~CG~Y 52 (60)
T 2zjr_Z 25 LTAPNLTECP--QCHGKKL----------SHHICPNCGYY 52 (60)
T ss_dssp CCCCCCEECT--TTCCEEC----------TTBCCTTTCBS
T ss_pred ccCCCceECC--CCCCEeC----------CceEcCCCCcC
Confidence 3446777887 6777643 23347777643
No 193
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.23 E-value=15 Score=26.29 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=23.4
Q ss_pred CcccccccccCCcCCcCccccCCCCChhhHHHHHHHH
Q 043604 36 GIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYI 72 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~ 72 (268)
....|..|...|.....----..||..||..|....+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 3457999998885432111345799999999977654
No 194
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=25.98 E-value=36 Score=20.72 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=24.0
Q ss_pred cccCCCC-CceeeecCCcCeEEec-CCc-ccccccccccCCCCC
Q 043604 198 WARCPAC-GSCVERKEGCRVMYCS-CHS-VTYSRAKHISLRKHS 238 (268)
Q Consensus 198 ~k~CP~C-~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~~~~~~ 238 (268)
...||.- +..++ +.|. |+. .|+.|...-...+|.
T Consensus 8 ~~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~ 44 (64)
T 2d8u_A 8 HPMCKEHEDEKIN-------IYCLTCEVPTCSMCKVFGIHKACE 44 (64)
T ss_dssp CCCCSSCTTCCCC-------SEESSSCCCCCSHHHHSSSTTSSC
T ss_pred CCcCcCcCCCccc-------eEcCcCCceeCccccCCCcCCCCC
Confidence 3568877 66666 8997 999 999997543333343
No 195
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=25.96 E-value=48 Score=21.45 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=26.2
Q ss_pred ccCCCC-CceeeecCCcCeEEec-CCc-ccccccccccCCCCCCCCC
Q 043604 199 ARCPAC-GSCVERKEGCRVMYCS-CHS-VTYSRAKHISLRKHSTRGD 242 (268)
Q Consensus 199 k~CP~C-~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~~~~~~~~~~ 242 (268)
..||.- +..++ ++|. |+. .|+.|.......+|.....
T Consensus 19 ~~C~~H~~e~l~-------lfC~~d~~~iC~~C~~~~~H~~H~~~~l 58 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCVSDDQLICALCKLVGRHRDHQVASL 58 (84)
T ss_dssp CCCSSCSSSCCC-------EEETTTTEEECHHHHHTSTTTTCCBCCC
T ss_pred CcCcCcCCcccc-------EEcCCCCceEcccCcCCCCCCCCCccCH
Confidence 578888 57777 9998 999 9999976444444444333
No 196
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=25.67 E-value=39 Score=23.92 Aligned_cols=27 Identities=30% Similarity=0.705 Sum_probs=16.9
Q ss_pred CcccCCCCCceeeecCCcCeEEec-CCc
Q 043604 197 HWARCPACGSCVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (268)
.--.||.|+..-.|..+=.--.|+ |+.
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk 86 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDY 86 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCC
Confidence 346899999855544444445565 665
No 197
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=25.11 E-value=11 Score=18.94 Aligned_cols=22 Identities=18% Similarity=0.537 Sum_probs=15.4
Q ss_pred CceeccCCCCCCCCCCHHHHhhcC
Q 043604 81 TAKIECPGVHCDQFLDPFSCKLMI 104 (268)
Q Consensus 81 ~~~i~CP~~~C~~~i~~~~i~~~l 104 (268)
.+.+.||. |...++...|...|
T Consensus 4 ef~vqcpv--cqq~mpaahin~hl 25 (29)
T 3vhs_A 4 EFQVQCPV--CQQMMPAAHINSHL 25 (29)
T ss_dssp -CEEECTT--TCCEEEGGGHHHHH
T ss_pred ceeeeChH--HHHhCcHHHHHHHH
Confidence 35689998 98877776665543
No 198
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.68 E-value=65 Score=23.39 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=29.2
Q ss_pred CCcccCCCCCceeeecCCcCeEEec-CCc-cccccccccc
Q 043604 196 MHWARCPACGSCVERKEGCRVMYCS-CHS-VTYSRAKHIS 233 (268)
Q Consensus 196 ~~~k~CP~C~~~iek~~GCnhm~C~-C~~-FC~~C~~~~~ 233 (268)
.+...|..|..+.-..++.. ..|. |++ +|-.|+...+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~~ 91 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVETS 91 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEECC
T ss_pred CCCccccccCCCcccccCCC-CCCCCCCcccccccCCccC
Confidence 34578999999886666666 6787 999 9999988653
No 199
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=24.43 E-value=59 Score=26.58 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=23.7
Q ss_pred CcccCCCCCceeeecCCcCeEEec-CCc
Q 043604 197 HWARCPACGSCVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 197 ~~k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (268)
..+-||.|+.+.+...+=-.+.|. |+.
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~ 133 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRE 133 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSC
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCC
Confidence 458999999999888877889997 997
No 200
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.40 E-value=39 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.655 Sum_probs=18.3
Q ss_pred cccCCCCCceeeecCCcCeEEec-CCc-c
Q 043604 198 WARCPACGSCVERKEGCRVMYCS-CHS-V 224 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~-F 224 (268)
--.||.|+..-.|..+=.-=.|. |+. |
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 36899999886666554445665 665 5
No 201
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=24.05 E-value=45 Score=26.81 Aligned_cols=22 Identities=32% Similarity=0.917 Sum_probs=14.1
Q ss_pred ccCCCCCc----eeeecCCcCeEEec-CCc
Q 043604 199 ARCPACGS----CVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 199 k~CP~C~~----~iek~~GCnhm~C~-C~~ 223 (268)
-+||.|+- .+- ..| ++.|. ||+
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYVCEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETTTCC
T ss_pred CcCCCCCCCCCceEe-CCC--CeecccCCC
Confidence 68999987 444 344 46664 654
No 202
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.02 E-value=79 Score=23.01 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHhhhhcC---------CCcccCCccccCceeeecc
Q 043604 104 IPSNLFSKWCDVLFEDYVLG---------FERSYCPNRNCMALVVNGC 142 (268)
Q Consensus 104 l~~~~~~~~~~~~~~~~~~~---------~~~~~Cp~~~C~~~~~~~~ 142 (268)
+.++.+......+.+..+.. +-..+|. +|++.+....
T Consensus 39 v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~--~CG~~~~~~~ 84 (139)
T 3a43_A 39 VAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCR--NCNYEWKLKE 84 (139)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEET--TTCCEEEGGG
T ss_pred hhHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECC--CCCCEEeccc
Confidence 34555555544444443321 3457898 8998887654
No 203
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=23.82 E-value=2.2e+02 Score=20.84 Aligned_cols=54 Identities=22% Similarity=0.484 Sum_probs=34.3
Q ss_pred CCCcccccccccCCcCCcCccccCCCCChhhHHHHHHHHH----HHhhcCCCceeccCCCCCCCC
Q 043604 34 TNGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAKYIE----AKVQDNNTAKIECPGVHCDQF 94 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~----~~i~~~~~~~i~CP~~~C~~~ 94 (268)
......|.+|.+.- +.+ .--.|...||..|+...+. ..|.. ...+-.||. |...
T Consensus 60 Dg~~d~C~vC~~GG---~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~-p~~~W~C~~--C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG---NLI-CCDFCHNAFCKKCILRNLGRKELSTIMD-ENNQWYCYI--CHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCS---SEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHT-STTCCCCTT--TCCC
T ss_pred CCCCCeecccCCCC---cEE-eCCCCCCeeeHhhcCCCCChhhhhhccc-CCCCCEeec--ccCc
Confidence 34567899998744 222 4557889999999997763 23311 123456887 7643
No 204
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.70 E-value=17 Score=19.75 Aligned_cols=16 Identities=25% Similarity=0.719 Sum_probs=12.1
Q ss_pred CcccccccccCCcCCc
Q 043604 36 GIFTCEICIEPISAND 51 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~ 51 (268)
+-|.|+||+.++...+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 3589999998885543
No 205
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.67 E-value=20 Score=22.09 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=23.0
Q ss_pred CCcccccccccCCcCCcCccccCCCCChhhHHHHHH
Q 043604 35 NGIFTCEICIEPISANDKFRNKDLCSHHFCQDCIAK 70 (268)
Q Consensus 35 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~ 70 (268)
.+...|+||.........++.-..|...|...|+.-
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCc
Confidence 446679999887643344444456777777777643
No 206
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=23.59 E-value=24 Score=20.24 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=20.8
Q ss_pred cCeeeCcccccccccccc-cccCCCCC
Q 043604 149 LKKARCPNCTQWFCFQCK-LAWHAGYR 174 (268)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~-~~~H~~~t 174 (268)
...+.|..|+..+|..|. ...|.+++
T Consensus 16 ~l~lfC~~d~~~iC~~C~~~~~H~~H~ 42 (48)
T 3ddt_A 16 KINIYCLTCEVPTCSMCKVFGIHKACE 42 (48)
T ss_dssp BCCEEETTTTEEECHHHHHHSTTTTSC
T ss_pred cccEEcCCCCeeEcccccCCCcCCCCc
Confidence 356889999999999997 45687764
No 207
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.07 E-value=19 Score=21.51 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.2
Q ss_pred CCcccCCCCCce
Q 043604 196 MHWARCPACGSC 207 (268)
Q Consensus 196 ~~~k~CP~C~~~ 207 (268)
.....||+|+..
T Consensus 12 ~~k~iCpkC~a~ 23 (51)
T 3j21_g 12 FKKYVCLRCGAT 23 (51)
T ss_dssp SSEEECTTTCCE
T ss_pred hCCccCCCCCCc
Confidence 345789999887
No 208
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=22.50 E-value=14 Score=28.53 Aligned_cols=75 Identities=15% Similarity=0.265 Sum_probs=41.9
Q ss_pred ccccccccCCcCCcC---ccccCCCCChhhHHHHHHHHH--HHhhc-CCCceeccCCCCCCCCCCHHHHhhcCChhHHHH
Q 043604 38 FTCEICIEPISANDK---FRNKDLCSHHFCQDCIAKYIE--AKVQD-NNTAKIECPGVHCDQFLDPFSCKLMIPSNLFSK 111 (268)
Q Consensus 38 ~~C~IC~~~~~~~~~---~~~~~~C~H~fC~~Cl~~~~~--~~i~~-~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~~ 111 (268)
..|+||...+...+. ++.-..|...|...|+.-.-+ ..+.+ +......||. |...-+. ..+..|..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~--C~~~~~~-~~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN--CTERHPA-EWRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT--TCCSSSC-HHHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC--CCCCCCH-HHHHHHHHHHHHH
Confidence 459999887765542 444557888888888754321 12211 0112578998 8765443 2444444444444
Q ss_pred HHHH
Q 043604 112 WCDV 115 (268)
Q Consensus 112 ~~~~ 115 (268)
+...
T Consensus 80 l~~v 83 (183)
T 3lqh_A 80 LKQV 83 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 209
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=22.49 E-value=49 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.720 Sum_probs=18.7
Q ss_pred cccCCCCCceeeecCCcCeEEec-CCc-c
Q 043604 198 WARCPACGSCVERKEGCRVMYCS-CHS-V 224 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~-F 224 (268)
--.||.|+..-.|..+=.--.|. |+. |
T Consensus 36 ky~CpfCgk~~vKR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 36 KYGCPFCGKVAVKRAAVGIWKCKPCKKII 64 (103)
T ss_dssp CEECTTTCCEEEEEEETTEEEETTTTEEE
T ss_pred CCCCCCCCCceeeecCcceEEcCCCCCEE
Confidence 36899999887766555555665 665 5
No 210
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=22.03 E-value=25 Score=22.18 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=22.7
Q ss_pred cCeeeCcccccccccccccccCCCCCc
Q 043604 149 LKKARCPNCTQWFCFQCKLAWHAGYRC 175 (268)
Q Consensus 149 ~~~~~C~~C~~~~C~~C~~~~H~~~tC 175 (268)
...+.|..|+..+|..|....|.+++-
T Consensus 27 ~l~lfC~~d~~~iC~~C~~~~H~~H~~ 53 (72)
T 2csv_A 27 TMELFCQTDQTCICYLCMFQEHKNHST 53 (72)
T ss_dssp BCCEEESSSCCEECHHHHHTTTSSSCE
T ss_pred ceEEEeCCCCeEEccccCCCCCCCCCE
Confidence 467889999999999998888888753
No 211
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.97 E-value=33 Score=22.07 Aligned_cols=26 Identities=23% Similarity=0.638 Sum_probs=16.7
Q ss_pred cccCCCCCceeeecCCcCeEEec-CCc
Q 043604 198 WARCPACGSCVERKEGCRVMYCS-CHS 223 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~-C~~ 223 (268)
--.||.|+..-.|..+=.-=.|. |+.
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCSCCKK 52 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCSSSCC
T ss_pred CccCCCCCCceeEecCCCeEECCCCCC
Confidence 35899999877666554444454 554
No 212
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.90 E-value=38 Score=18.94 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=11.1
Q ss_pred CCcccCCCCCceeee
Q 043604 196 MHWARCPACGSCVER 210 (268)
Q Consensus 196 ~~~k~CP~C~~~iek 210 (268)
.....||+|+..|.-
T Consensus 7 ~~~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV 21 (39)
T ss_dssp CCEEECTTTCCEEEG
T ss_pred CCCcccccccCcCCc
Confidence 445689999998763
No 213
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=21.70 E-value=39 Score=25.34 Aligned_cols=20 Identities=20% Similarity=0.585 Sum_probs=16.8
Q ss_pred cccCCCCCceeeecCCcCeEEec--CCc
Q 043604 198 WARCPACGSCVERKEGCRVMYCS--CHS 223 (268)
Q Consensus 198 ~k~CP~C~~~iek~~GCnhm~C~--C~~ 223 (268)
.|.||+|.-+++ ++-|+ ||+
T Consensus 110 ~k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 110 RKSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp HSBCSSSCCBEE------EECCCTBTTB
T ss_pred cCCCCCCCccee------eEeccCcCCC
Confidence 489999999888 67896 885
No 214
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.59 E-value=23 Score=28.26 Aligned_cols=34 Identities=24% Similarity=0.583 Sum_probs=23.6
Q ss_pred ccccccccCCcCCcCccccCCCCChhhHHHHHHH
Q 043604 38 FTCEICIEPISANDKFRNKDLCSHHFCQDCIAKY 71 (268)
Q Consensus 38 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~Cl~~~ 71 (268)
..|.+|...|.....-.--..||..||..|....
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4899999888543221134579999999987643
No 215
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.39 E-value=40 Score=25.33 Aligned_cols=36 Identities=19% Similarity=0.473 Sum_probs=24.0
Q ss_pred CCCcccccccccCCcCCcCccccC--CCCChhhHHHHHHHHH
Q 043604 34 TNGIFTCEICIEPISANDKFRNKD--LCSHHFCQDCIAKYIE 73 (268)
Q Consensus 34 ~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fC~~Cl~~~~~ 73 (268)
+.....|.||.+.- +.+ .-. .|...||.+||...+-
T Consensus 76 DG~~~yC~wC~~Gg---~l~-~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGGR---EVL-MCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCCS---EEE-ECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCCC---eEE-eeCCCCCCCchhHHHHHHhcC
Confidence 34456788887643 222 222 5888999999998863
No 216
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=21.04 E-value=39 Score=21.47 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=12.4
Q ss_pred CCcccCCCCCceeeec
Q 043604 196 MHWARCPACGSCVERK 211 (268)
Q Consensus 196 ~~~k~CP~C~~~iek~ 211 (268)
...+.||.|+.+++-.
T Consensus 7 ~~~~~CP~Cgkp~~W~ 22 (68)
T 1lv3_A 7 TITVNCPTCGKTVVWG 22 (68)
T ss_dssp CCEEECTTTCCEEECS
T ss_pred CCcCcCCCCCCccccc
Confidence 3568899999999743
No 217
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=20.64 E-value=27 Score=24.20 Aligned_cols=55 Identities=16% Similarity=0.409 Sum_probs=34.4
Q ss_pred CcccccccccCCcCCcCccccC-CCCChhhHHHHHHHHHH--Hh-hcCCCceeccCCCCCCC
Q 043604 36 GIFTCEICIEPISANDKFRNKD-LCSHHFCQDCIAKYIEA--KV-QDNNTAKIECPGVHCDQ 93 (268)
Q Consensus 36 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~Cl~~~~~~--~i-~~~~~~~i~CP~~~C~~ 93 (268)
+...|.||...+.....++.-- .|...|..+|+.---.. .| .+ ......||. |..
T Consensus 2 ~~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~-~~~~~~Cp~--C~~ 60 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTE-ASAVWACDL--CLK 60 (105)
T ss_dssp CCCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHC-TTEEECCHH--HHH
T ss_pred CcCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccC-CCCCEECcc--ccC
Confidence 3568999998875544554444 68888888887643221 12 12 235688887 753
No 218
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.35 E-value=54 Score=27.53 Aligned_cols=33 Identities=33% Similarity=0.750 Sum_probs=24.5
Q ss_pred ccCCCCCc-----eee---ecCCcCeEEec-CCc-c------ccccccc
Q 043604 199 ARCPACGS-----CVE---RKEGCRVMYCS-CHS-V------TYSRAKH 231 (268)
Q Consensus 199 k~CP~C~~-----~ie---k~~GCnhm~C~-C~~-F------C~~C~~~ 231 (268)
..||-|+. .|. +.+|=.++.|. |++ | |-.||..
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 68999997 232 24788899997 998 7 6678876
No 219
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=20.30 E-value=19 Score=30.20 Aligned_cols=31 Identities=26% Similarity=0.759 Sum_probs=23.4
Q ss_pred hCCcccCCCCCceeeecC-CcCeEEec-CCc-cc
Q 043604 195 RMHWARCPACGSCVERKE-GCRVMYCS-CHS-VT 225 (268)
Q Consensus 195 ~~~~k~CP~C~~~iek~~-GCnhm~C~-C~~-FC 225 (268)
+.-|.+||+|+.+|...+ .=|...|. |++ +=
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r 54 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMR 54 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBCC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCCC
Confidence 456899999999999884 23778886 988 73
No 220
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=40 Score=19.80 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=10.7
Q ss_pred CCcccCCCCCceee
Q 043604 196 MHWARCPACGSCVE 209 (268)
Q Consensus 196 ~~~k~CP~C~~~ie 209 (268)
.+.+.||+|++..-
T Consensus 10 ~~~~~CPrCn~~f~ 23 (49)
T 2e72_A 10 GGRKICPRCNAQFR 23 (49)
T ss_dssp SSCCCCTTTCCCCS
T ss_pred CCceeCCccccccc
Confidence 35689999988665
Done!