RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 043606
(101 letters)
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli
[TaxId: 562]}
Length = 117
Score = 84.1 bits (208), Expect = 3e-23
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 7 TGGMKVKADRDESSPYAAMLAAQDVSQRCKERGITALHIKLRATGGNKTKTPGPGAQSAL 66
T G +S+P+AA +AA+ + KE GI L + + K PGPG +S +
Sbjct: 34 TAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMV--------KGPGPGRESTI 85
Query: 67 RALARSGMKIGRIEDVTPIPTDSTRRKGGRR 97
RAL +G +I I DVTPIP + R RR
Sbjct: 86 RALNAAGFRITNITDVTPIPHNGCRPPKKRR 116
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
thermophilus [TaxId: 274]}
Length = 119
Score = 77.2 bits (190), Expect = 1e-20
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 7 TGGMKVKADRDESSPYAAMLAAQDVSQRCKERGITALHIKLRATGGNKTKTPGPGAQSAL 66
+GG+ + +PYAA LAA D +++ G+ ++ + +R G G + A+
Sbjct: 34 SGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRG--------TGAGREQAI 85
Query: 67 RALARSGMKIGRIEDVTPIPTDSTRRKGGRR 97
RAL SG+++ I D TP+P + R K R
Sbjct: 86 RALQASGLQVKSIVDDTPVPHNGCRPKKKFR 116
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 28.9 bits (63), Expect = 0.10
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 27 AAQDVSQRCKERGIT-ALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPI 85
+ + K GI L + GG K G + +L + G++ + V P
Sbjct: 21 TIPKIGEEIKNAGIRKVLFL----YGGGSIKKNGV-YDQVVDSLKKHGIEWVEVSGVKPN 75
Query: 86 PTDST 90
P S
Sbjct: 76 PVLSK 80
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 28.2 bits (61), Expect = 0.17
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 59 GPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKG 94
G G +A + A+ K+ ++ VTP P + G
Sbjct: 12 GSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLG 47
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia
coli [TaxId: 562]}
Length = 385
Score = 27.7 bits (60), Expect = 0.23
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 27 AAQDVSQRCKERGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIP 86
A ++ K RG I T + + +G+ + V P P
Sbjct: 17 AVGALTDEVKRRGYQKALI---VTDKTLVQCGV--VAKVTDKMDAAGLAWAIYDGVVPNP 71
Query: 87 TDSTRRKG 94
T + ++G
Sbjct: 72 TITVVKEG 79
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 26.9 bits (59), Expect = 0.40
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 13/49 (26%)
Query: 28 AQDVSQRCKERGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKI 76
DV Q + +GI +++ AL AL SG+ +
Sbjct: 15 RSDVVQLYRSKGIN--GMRIYFA-----------DGQALSALRNSGIGL 50
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa
acuminata), 1,3-beta-glucanase [TaxId: 4641]}
Length = 312
Score = 26.5 bits (58), Expect = 0.50
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 16/67 (23%)
Query: 25 MLAAQDVSQRCKERGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMK--IG-RIED 81
+ +V K I ++L AL+AL S ++ + D
Sbjct: 12 LPPPSEVVSLYKSNNIA--RMRLYDPNQA-----------ALQALRNSNIQVLLDVPRSD 58
Query: 82 VTPIPTD 88
V + ++
Sbjct: 59 VQSLASN 65
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
Length = 306
Score = 26.1 bits (57), Expect = 0.73
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 13/49 (26%)
Query: 28 AQDVSQRCKERGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKI 76
A V K GI ++L A Q+AL+A+ +G+ +
Sbjct: 15 ASTVVSMFKSNGIK--SMRLYAP-----------NQAALQAVGGTGINV 50
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga
maritima [TaxId: 2336]}
Length = 114
Score = 25.5 bits (55), Expect = 1.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 74 MKIGRIEDVTPIPTDSTRRKGGRR 97
M + R DVTP + + +G R+
Sbjct: 1 MILKRAYDVTPQKISTDKVRGVRK 24
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide
dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 25.4 bits (54), Expect = 1.2
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 59 GPGAQSALRALARSGMKIGRIEDVTPIPTDST 90
GPG A A+ G+K IE +
Sbjct: 12 GPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 24.6 bits (52), Expect = 2.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 59 GPGAQSALRALARSGMKIGRIE 80
G G +A R AR K+ +E
Sbjct: 10 GSGGMAAARRAARHNAKVALVE 31
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 24.1 bits (51), Expect = 3.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 59 GPGAQSALRALARSGMKIGRIEDVTPI 85
GPG SA A A G+K+ +E +
Sbjct: 15 GPGGYSAAFAAADEGLKVAIVERYKTL 41
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide
dehydrogenase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 223
Score = 24.0 bits (51), Expect = 3.9
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 59 GPGAQSALRALARSGMKIGRIE 80
GPG A A+ G K+ +E
Sbjct: 12 GPGGYVAAIRAAQLGQKVTIVE 33
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 23.7 bits (50), Expect = 6.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 59 GPGAQSALRALARSGMKIGRIED 81
G G ++ R A G + +E
Sbjct: 12 GSGGLASARRAAELGARAAVVES 34
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 23.3 bits (49), Expect = 7.7
Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 8 GGMKVKADRDESSPYAAMLAAQDVSQRCKERGI 40
+++ D D + P A + ++ R +++G+
Sbjct: 354 IAIELFEDGDHNKPDAKL--TAEIVARARDKGL 384
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 23.4 bits (49), Expect = 7.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 59 GPGAQSALRALARSGMKIGRIE 80
G G +++ A G K IE
Sbjct: 11 GSGGIASINRAAMYGQKCALIE 32
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide
dehydrogenase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 233
Score = 22.9 bits (48), Expect = 9.0
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 59 GPGAQSALRALARSGMKIGRIE 80
GP A A+ G +E
Sbjct: 14 GPAGYVAAIKAAQLGFNTACVE 35
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating
factor large subunit DdrA {Klebsiella oxytoca [TaxId:
571]}
Length = 241
Score = 22.8 bits (49), Expect = 9.3
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 17 DESSPYAAMLAAQDVSQRCKERGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKI 76
+E++P +A + +++ K R I A +++L A G + GA++ ++A+
Sbjct: 74 NEATPVIGDVAMETITETIKARAIPAGNLELLAQGRSVRVDVAAGAEAIMKAVDG----C 129
Query: 77 GRIEDVT 83
GR+++VT
Sbjct: 130 GRLDNVT 136
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 23.0 bits (48), Expect = 9.5
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 59 GPGAQSALRALARSGMKIGRIE 80
GPG A + G+ +E
Sbjct: 14 GPGGYVAAIRAGQLGIPTVLVE 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.367
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 351,413
Number of extensions: 13616
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 23
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)