Query 043608
Match_columns 579
No_of_seqs 612 out of 2555
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 06:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9.7E-86 2.1E-90 688.1 61.9 574 1-579 53-666 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.7E-76 8E-81 616.1 57.3 531 1-539 154-727 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.6E-72 5.6E-77 574.3 52.8 528 2-571 373-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 4.7E-69 1E-73 550.4 55.2 510 30-579 365-891 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8.4E-69 1.8E-73 547.4 52.3 471 1-537 89-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.6E-63 3.6E-68 508.6 47.0 419 98-579 84-503 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-33 6.7E-38 301.1 55.0 546 3-564 333-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-32 4.8E-37 294.5 56.7 555 6-576 302-877 (899)
9 PRK11447 cellulose synthase su 100.0 4.9E-24 1.1E-28 229.3 51.5 541 7-564 120-737 (1157)
10 PRK11447 cellulose synthase su 100.0 1.1E-22 2.4E-27 218.9 56.2 519 6-564 35-697 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.1E-22 2.3E-27 208.8 51.0 541 11-570 56-710 (987)
12 PRK09782 bacteriophage N4 rece 99.9 3.1E-19 6.8E-24 183.6 52.0 544 2-571 81-745 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.1E-19 4.6E-24 164.4 31.2 461 53-556 33-508 (966)
14 PRK11788 tetratricopeptide rep 99.9 2.4E-19 5.2E-24 172.6 33.3 298 209-539 42-354 (389)
15 KOG4626 O-linked N-acetylgluco 99.9 3.8E-19 8.1E-24 162.8 30.9 434 38-513 51-501 (966)
16 PRK11788 tetratricopeptide rep 99.9 1.6E-19 3.4E-24 173.9 29.6 300 111-437 45-354 (389)
17 KOG2002 TPR-containing nuclear 99.9 5.2E-18 1.1E-22 163.6 39.0 541 15-564 146-742 (1018)
18 KOG4422 Uncharacterized conser 99.9 2E-17 4.3E-22 145.0 35.7 342 10-448 126-480 (625)
19 KOG2002 TPR-containing nuclear 99.8 8.6E-17 1.9E-21 155.3 39.5 535 13-564 108-706 (1018)
20 TIGR00990 3a0801s09 mitochondr 99.8 5E-17 1.1E-21 164.6 39.8 414 104-529 130-569 (615)
21 PRK15174 Vi polysaccharide exp 99.8 4E-17 8.6E-22 164.6 38.3 318 177-530 48-380 (656)
22 PRK15174 Vi polysaccharide exp 99.8 1.7E-17 3.8E-22 167.1 34.8 218 7-230 50-278 (656)
23 TIGR00990 3a0801s09 mitochondr 99.8 4.6E-17 1E-21 164.9 37.0 420 39-496 131-571 (615)
24 PRK10049 pgaA outer membrane p 99.8 1.1E-16 2.5E-21 164.9 39.7 390 104-530 18-455 (765)
25 PRK10049 pgaA outer membrane p 99.8 2.5E-16 5.3E-21 162.5 39.5 413 32-495 12-455 (765)
26 PRK14574 hmsH outer membrane p 99.8 8.6E-15 1.9E-19 148.0 44.4 201 339-544 297-523 (822)
27 PRK14574 hmsH outer membrane p 99.8 5.4E-15 1.2E-19 149.4 42.9 415 110-564 43-510 (822)
28 KOG4422 Uncharacterized conser 99.7 3.9E-14 8.4E-19 124.7 34.0 418 101-564 116-587 (625)
29 KOG2076 RNA polymerase III tra 99.7 1.6E-13 3.4E-18 132.2 40.2 526 45-577 149-780 (895)
30 KOG2003 TPR repeat-containing 99.7 4.5E-15 9.7E-20 131.4 26.6 487 40-563 206-718 (840)
31 KOG4318 Bicoid mRNA stability 99.7 8.5E-14 1.8E-18 133.4 31.9 487 21-564 12-622 (1088)
32 KOG2003 TPR repeat-containing 99.7 8.3E-14 1.8E-18 123.5 28.9 468 5-517 207-709 (840)
33 KOG4318 Bicoid mRNA stability 99.7 8.4E-13 1.8E-17 126.8 35.6 452 99-564 202-805 (1088)
34 KOG1915 Cell cycle control pro 99.7 4.6E-12 9.9E-17 113.3 35.7 432 9-476 83-549 (677)
35 KOG2076 RNA polymerase III tra 99.7 3.2E-12 6.8E-17 123.5 37.3 457 77-564 146-692 (895)
36 KOG0495 HAT repeat protein [RN 99.6 1.7E-10 3.7E-15 107.6 44.5 473 53-569 364-883 (913)
37 KOG0495 HAT repeat protein [RN 99.6 6.3E-10 1.4E-14 104.0 46.4 446 80-538 416-884 (913)
38 PRK10747 putative protoheme IX 99.6 2.4E-12 5.2E-17 122.5 29.5 279 277-564 97-387 (398)
39 TIGR00540 hemY_coli hemY prote 99.6 3E-12 6.5E-17 122.6 28.7 285 275-564 95-396 (409)
40 KOG1915 Cell cycle control pro 99.6 8.1E-10 1.7E-14 99.3 40.9 479 48-564 86-622 (677)
41 KOG1155 Anaphase-promoting com 99.6 3.5E-11 7.6E-16 107.5 31.9 301 272-577 235-547 (559)
42 PF13429 TPR_15: Tetratricopep 99.6 8.3E-15 1.8E-19 133.3 9.6 254 6-291 15-275 (280)
43 PRK10747 putative protoheme IX 99.6 1.2E-12 2.5E-17 124.7 23.3 275 48-360 97-387 (398)
44 KOG2047 mRNA splicing factor [ 99.6 1E-09 2.2E-14 102.4 40.7 93 37-129 104-197 (835)
45 PF13429 TPR_15: Tetratricopep 99.5 3.8E-14 8.3E-19 128.9 11.9 258 269-563 13-273 (280)
46 TIGR00540 hemY_coli hemY prote 99.5 2E-11 4.3E-16 117.0 29.4 127 365-494 262-397 (409)
47 KOG3785 Uncharacterized conser 99.5 3.9E-10 8.4E-15 97.5 30.4 451 42-542 29-498 (557)
48 KOG1173 Anaphase-promoting com 99.5 1.4E-09 3.1E-14 100.1 35.4 280 262-549 242-533 (611)
49 KOG0547 Translocase of outer m 99.5 2.7E-10 5.9E-15 102.7 30.2 403 106-530 120-565 (606)
50 KOG2047 mRNA splicing factor [ 99.5 2.4E-08 5.3E-13 93.5 42.2 521 2-561 105-717 (835)
51 COG2956 Predicted N-acetylgluc 99.5 6.5E-11 1.4E-15 100.9 23.1 289 48-395 48-347 (389)
52 COG2956 Predicted N-acetylgluc 99.4 1.5E-10 3.3E-15 98.8 24.4 282 276-564 47-344 (389)
53 COG3071 HemY Uncharacterized e 99.4 3.8E-10 8.3E-15 99.4 27.7 249 308-564 127-387 (400)
54 KOG1155 Anaphase-promoting com 99.4 1.5E-09 3.3E-14 97.4 31.8 250 111-392 237-492 (559)
55 COG3071 HemY Uncharacterized e 99.4 2.1E-10 4.5E-15 101.1 26.0 286 114-429 97-389 (400)
56 KOG1126 DNA-binding cell divis 99.4 2.2E-11 4.7E-16 114.1 21.0 284 12-331 332-623 (638)
57 KOG0547 Translocase of outer m 99.4 1.6E-09 3.5E-14 97.8 31.5 215 277-495 339-565 (606)
58 KOG1126 DNA-binding cell divis 99.4 2.9E-11 6.3E-16 113.2 21.3 274 278-564 333-617 (638)
59 KOG1173 Anaphase-promoting com 99.4 9.5E-10 2.1E-14 101.2 30.1 278 295-578 240-530 (611)
60 KOG3785 Uncharacterized conser 99.4 4.7E-09 1E-13 90.9 32.2 448 6-505 29-497 (557)
61 KOG2376 Signal recognition par 99.4 1.5E-08 3.3E-13 94.0 35.6 177 348-528 321-517 (652)
62 KOG2376 Signal recognition par 99.4 2.4E-08 5.2E-13 92.7 36.4 446 111-568 22-521 (652)
63 PF13041 PPR_2: PPR repeat fam 99.4 2.6E-12 5.7E-17 81.2 6.3 50 465-514 1-50 (50)
64 PF13041 PPR_2: PPR repeat fam 99.3 4.5E-12 9.7E-17 80.1 6.7 50 364-413 1-50 (50)
65 KOG0985 Vesicle coat protein c 99.3 1.3E-07 2.9E-12 93.1 39.4 179 365-563 1103-1304(1666)
66 KOG1156 N-terminal acetyltrans 99.3 2.8E-08 6.1E-13 93.3 33.0 443 11-494 19-509 (700)
67 PF12569 NARP1: NMDA receptor- 99.3 4.6E-08 1E-12 94.2 32.8 281 179-495 12-333 (517)
68 TIGR02521 type_IV_pilW type IV 99.3 3E-09 6.5E-14 94.6 23.0 193 367-564 32-229 (234)
69 TIGR02521 type_IV_pilW type IV 99.3 3E-09 6.6E-14 94.6 22.9 196 333-530 30-231 (234)
70 PRK12370 invasion protein regu 99.2 6.1E-10 1.3E-14 111.1 19.8 246 48-329 274-536 (553)
71 KOG1156 N-terminal acetyltrans 99.2 1.9E-07 4.1E-12 87.9 33.9 450 44-531 16-511 (700)
72 COG3063 PilF Tfp pilus assembl 99.2 1.3E-08 2.7E-13 83.2 21.2 206 368-578 37-248 (250)
73 KOG1129 TPR repeat-containing 99.2 1.2E-09 2.7E-14 93.4 16.0 222 338-564 227-455 (478)
74 KOG0985 Vesicle coat protein c 99.2 3.5E-06 7.6E-11 83.5 40.8 435 104-561 609-1189(1666)
75 KOG3616 Selective LIM binding 99.2 3.3E-07 7.1E-12 87.5 31.4 369 111-564 742-1131(1636)
76 KOG1840 Kinesin light chain [C 99.1 2.9E-08 6.4E-13 94.3 24.7 65 207-291 246-310 (508)
77 KOG1840 Kinesin light chain [C 99.1 2.1E-08 4.6E-13 95.3 23.3 125 440-564 329-476 (508)
78 KOG1174 Anaphase-promoting com 99.1 4.2E-06 9.2E-11 74.7 36.1 415 44-496 52-500 (564)
79 PRK12370 invasion protein regu 99.1 3.9E-08 8.5E-13 98.2 26.4 209 348-565 318-533 (553)
80 PF12569 NARP1: NMDA receptor- 99.1 8.1E-08 1.7E-12 92.6 27.3 285 272-564 12-331 (517)
81 KOG3617 WD40 and TPR repeat-co 99.1 1E-06 2.2E-11 85.3 33.6 229 9-291 738-994 (1416)
82 KOG1129 TPR repeat-containing 99.1 8.3E-09 1.8E-13 88.4 17.4 225 206-495 227-457 (478)
83 KOG4162 Predicted calmodulin-b 99.1 3.4E-06 7.3E-11 81.4 35.9 271 272-564 486-780 (799)
84 KOG3617 WD40 and TPR repeat-co 99.1 1.9E-06 4.1E-11 83.5 32.2 348 147-556 811-1189(1416)
85 KOG4340 Uncharacterized conser 99.0 3.5E-07 7.7E-12 77.7 24.1 418 103-573 12-450 (459)
86 KOG4162 Predicted calmodulin-b 99.0 2.3E-06 4.9E-11 82.6 30.3 422 65-530 318-782 (799)
87 KOG4340 Uncharacterized conser 99.0 2E-06 4.4E-11 73.2 25.9 342 3-392 14-372 (459)
88 PRK11189 lipoprotein NlpI; Pro 99.0 6.5E-08 1.4E-12 88.2 18.8 218 8-232 35-266 (296)
89 KOG3616 Selective LIM binding 99.0 1.3E-05 2.9E-10 76.9 34.0 166 267-461 768-933 (1636)
90 KOG1174 Anaphase-promoting com 98.9 2.1E-05 4.5E-10 70.4 32.0 287 275-569 207-503 (564)
91 COG3063 PilF Tfp pilus assembl 98.9 6E-08 1.3E-12 79.4 14.9 193 37-231 37-236 (250)
92 KOG1127 TPR repeat-containing 98.9 3.6E-05 7.8E-10 76.7 35.1 180 14-198 473-657 (1238)
93 KOG2053 Mitochondrial inherita 98.9 9.6E-05 2.1E-09 73.1 37.6 219 8-232 18-256 (932)
94 PRK11189 lipoprotein NlpI; Pro 98.9 2.9E-06 6.4E-11 77.4 26.2 116 278-394 40-160 (296)
95 PF04733 Coatomer_E: Coatomer 98.9 5.2E-08 1.1E-12 87.4 14.5 147 409-564 110-262 (290)
96 cd05804 StaR_like StaR_like; a 98.8 2.7E-05 5.9E-10 74.1 31.6 298 264-564 6-333 (355)
97 cd05804 StaR_like StaR_like; a 98.8 1.7E-05 3.6E-10 75.5 30.0 60 472-531 269-336 (355)
98 PF04733 Coatomer_E: Coatomer 98.8 4.1E-07 8.9E-12 81.6 16.6 126 336-463 133-263 (290)
99 PRK04841 transcriptional regul 98.7 0.0001 2.3E-09 79.7 36.7 295 270-564 415-757 (903)
100 KOG0548 Molecular co-chaperone 98.7 4.8E-05 1E-09 70.7 27.4 224 267-505 227-462 (539)
101 KOG0624 dsRNA-activated protei 98.7 0.0002 4.3E-09 62.8 29.1 289 176-497 43-371 (504)
102 PF12854 PPR_1: PPR repeat 98.7 3.2E-08 6.9E-13 55.7 3.5 32 497-528 2-33 (34)
103 PRK04841 transcriptional regul 98.7 0.0002 4.3E-09 77.6 35.4 260 272-531 460-760 (903)
104 KOG1914 mRNA cleavage and poly 98.6 0.00042 9.1E-09 64.7 34.3 182 382-564 347-536 (656)
105 KOG1127 TPR repeat-containing 98.6 0.00016 3.4E-09 72.4 29.7 558 4-574 531-1184(1238)
106 KOG0624 dsRNA-activated protei 98.6 3E-05 6.6E-10 67.7 20.9 203 7-231 46-252 (504)
107 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.3E-12 53.0 4.3 32 431-462 2-33 (34)
108 KOG1128 Uncharacterized conser 98.5 4E-05 8.7E-10 73.9 22.9 218 168-428 395-614 (777)
109 KOG3081 Vesicle coat complex C 98.5 5.7E-05 1.2E-09 63.7 19.5 137 409-554 116-257 (299)
110 PRK15359 type III secretion sy 98.5 3.3E-06 7.1E-11 67.5 12.0 90 472-564 29-118 (144)
111 KOG0548 Molecular co-chaperone 98.5 0.00021 4.5E-09 66.7 24.4 386 8-431 11-456 (539)
112 TIGR03302 OM_YfiO outer membra 98.5 1.3E-05 2.9E-10 71.0 16.8 181 365-565 32-230 (235)
113 KOG1070 rRNA processing protei 98.4 9.3E-05 2E-09 76.6 23.8 223 169-421 1456-1691(1710)
114 KOG1128 Uncharacterized conser 98.4 1.5E-05 3.2E-10 76.8 17.2 216 330-564 394-613 (777)
115 KOG1070 rRNA processing protei 98.4 0.0001 2.2E-09 76.3 23.3 198 302-500 1461-1667(1710)
116 TIGR03302 OM_YfiO outer membra 98.4 3.1E-05 6.6E-10 68.6 18.1 185 332-531 31-232 (235)
117 KOG2053 Mitochondrial inherita 98.4 0.0029 6.2E-08 63.1 40.7 216 46-294 20-256 (932)
118 KOG1914 mRNA cleavage and poly 98.4 0.0023 5E-08 60.0 34.0 147 315-463 347-499 (656)
119 KOG1125 TPR repeat-containing 98.3 0.00022 4.9E-09 67.1 21.9 216 181-428 295-525 (579)
120 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.4E-05 3E-10 74.4 14.2 127 438-568 171-298 (395)
121 PRK14720 transcript cleavage f 98.3 0.00052 1.1E-08 70.4 26.4 239 32-310 28-268 (906)
122 KOG1125 TPR repeat-containing 98.3 8.5E-05 1.8E-09 69.8 19.0 247 311-562 297-566 (579)
123 COG5010 TadD Flp pilus assembl 98.3 0.00011 2.3E-09 62.2 17.8 155 405-564 70-228 (257)
124 PRK10370 formate-dependent nit 98.3 0.00014 3.1E-09 61.6 18.3 153 373-541 23-181 (198)
125 COG5010 TadD Flp pilus assembl 98.3 0.00018 3.8E-09 60.9 17.8 153 372-527 72-227 (257)
126 COG4783 Putative Zn-dependent 98.3 0.00051 1.1E-08 63.6 22.0 135 409-564 314-451 (484)
127 PRK10370 formate-dependent nit 98.2 6E-05 1.3E-09 63.9 14.7 141 409-564 24-170 (198)
128 KOG3081 Vesicle coat complex C 98.2 0.0013 2.8E-08 55.9 21.9 135 271-415 115-255 (299)
129 PRK14720 transcript cleavage f 98.2 0.001 2.2E-08 68.4 25.4 169 201-395 30-198 (906)
130 PLN02789 farnesyltranstransfer 98.2 0.00093 2E-08 61.1 23.1 142 419-564 126-299 (320)
131 PF07079 DUF1347: Protein of u 98.2 0.0047 1E-07 56.8 35.2 438 82-575 18-530 (549)
132 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6.2E-11 48.9 4.3 33 469-501 2-34 (35)
133 PLN02789 farnesyltranstransfer 98.2 0.0018 3.9E-08 59.3 24.0 177 350-529 88-300 (320)
134 TIGR00756 PPR pentatricopeptid 98.1 5.2E-06 1.1E-10 47.7 4.6 33 368-400 2-34 (35)
135 COG4783 Putative Zn-dependent 98.1 0.003 6.6E-08 58.6 23.8 83 268-353 344-427 (484)
136 PF13812 PPR_3: Pentatricopept 98.1 5E-06 1.1E-10 47.4 4.1 33 265-297 2-34 (34)
137 PF13812 PPR_3: Pentatricopept 98.1 5.3E-06 1.1E-10 47.3 4.1 33 468-500 2-34 (34)
138 PRK15179 Vi polysaccharide bio 98.1 0.00015 3.3E-09 73.3 16.5 158 397-564 82-242 (694)
139 KOG3060 Uncharacterized conser 98.1 0.0027 5.8E-08 53.6 20.1 83 379-463 99-181 (289)
140 PF09976 TPR_21: Tetratricopep 98.0 0.0001 2.3E-09 59.2 11.9 113 448-563 23-143 (145)
141 PRK15359 type III secretion sy 98.0 9.1E-05 2E-09 59.2 11.4 91 439-530 27-120 (144)
142 TIGR02552 LcrH_SycD type III s 98.0 8E-05 1.7E-09 59.3 10.9 91 439-530 20-113 (135)
143 PRK15179 Vi polysaccharide bio 98.0 0.0013 2.7E-08 66.8 21.6 157 365-531 85-245 (694)
144 PF04840 Vps16_C: Vps16, C-ter 98.0 0.011 2.4E-07 54.0 28.2 109 437-562 178-286 (319)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 9.5E-05 2.1E-09 68.9 10.7 118 107-229 175-295 (395)
146 TIGR02552 LcrH_SycD type III s 97.9 0.00038 8.1E-09 55.4 12.6 92 470-564 20-111 (135)
147 KOG3060 Uncharacterized conser 97.9 0.00023 4.9E-09 59.8 11.1 81 48-129 99-182 (289)
148 PF09976 TPR_21: Tetratricopep 97.9 0.0011 2.3E-08 53.4 14.6 53 379-431 24-78 (145)
149 PF01535 PPR: PPR repeat; Int 97.8 2.3E-05 5E-10 43.4 3.4 30 469-498 2-31 (31)
150 PF01535 PPR: PPR repeat; Int 97.8 3.8E-05 8.3E-10 42.5 3.6 31 265-295 1-31 (31)
151 PF12895 Apc3: Anaphase-promot 97.8 4.4E-05 9.5E-10 54.6 4.7 80 480-563 2-83 (84)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00082 1.8E-08 52.0 12.4 94 469-564 4-102 (119)
153 cd00189 TPR Tetratricopeptide 97.7 0.00041 8.9E-09 51.1 10.1 92 470-564 3-94 (100)
154 PF08579 RPM2: Mitochondrial r 97.7 0.00049 1.1E-08 50.0 9.2 79 268-346 29-116 (120)
155 PF07079 DUF1347: Protein of u 97.7 0.041 8.9E-07 50.9 36.5 58 477-542 472-529 (549)
156 PF06239 ECSIT: Evolutionarily 97.7 0.00054 1.2E-08 56.6 9.9 96 192-314 35-153 (228)
157 PF10037 MRP-S27: Mitochondria 97.7 0.00061 1.3E-08 63.9 11.5 120 396-515 61-186 (429)
158 PF12895 Apc3: Anaphase-promot 97.6 3.5E-05 7.7E-10 55.1 2.6 81 12-94 2-82 (84)
159 PF14938 SNAP: Soluble NSF att 97.6 0.004 8.8E-08 56.5 16.2 101 469-570 157-268 (282)
160 PF10037 MRP-S27: Mitochondria 97.6 0.0012 2.7E-08 61.9 12.8 118 363-480 63-186 (429)
161 KOG2041 WD40 repeat protein [G 97.6 0.048 1E-06 53.2 23.0 161 13-199 677-850 (1189)
162 PF08579 RPM2: Mitochondrial r 97.6 0.0015 3.3E-08 47.5 10.2 78 371-448 30-116 (120)
163 KOG2041 WD40 repeat protein [G 97.6 0.096 2.1E-06 51.3 25.7 70 149-227 747-821 (1189)
164 PF14559 TPR_19: Tetratricopep 97.6 0.00017 3.8E-09 49.0 5.0 63 513-577 2-65 (68)
165 PF05843 Suf: Suppressor of fo 97.5 0.00044 9.5E-09 62.4 8.4 142 402-548 2-150 (280)
166 PRK10866 outer membrane biogen 97.4 0.051 1.1E-06 47.9 20.0 176 373-564 39-238 (243)
167 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0023 5.1E-08 49.4 10.7 93 439-531 5-105 (119)
168 KOG0553 TPR repeat-containing 97.4 0.00096 2.1E-08 57.8 8.7 96 446-546 91-190 (304)
169 KOG1538 Uncharacterized conser 97.4 0.064 1.4E-06 51.9 21.1 86 402-496 748-846 (1081)
170 cd00189 TPR Tetratricopeptide 97.4 0.00048 1.1E-08 50.7 6.1 92 2-96 3-94 (100)
171 COG4700 Uncharacterized protei 97.4 0.049 1.1E-06 43.9 16.9 131 398-530 86-221 (251)
172 PRK15363 pathogenicity island 97.4 0.0043 9.3E-08 49.0 11.1 92 439-531 38-132 (157)
173 KOG2280 Vacuolar assembly/sort 97.4 0.19 4E-06 49.9 28.8 115 431-561 679-793 (829)
174 PLN03088 SGT1, suppressor of 97.3 0.0026 5.6E-08 59.8 11.5 95 443-541 9-106 (356)
175 PF14938 SNAP: Soluble NSF att 97.3 0.01 2.2E-07 54.0 15.0 61 265-326 36-101 (282)
176 PRK10866 outer membrane biogen 97.3 0.026 5.6E-07 49.7 16.9 174 341-529 39-239 (243)
177 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.15 3.3E-06 47.3 30.4 127 403-531 399-531 (660)
178 PF05843 Suf: Suppressor of fo 97.3 0.0078 1.7E-07 54.4 13.4 142 367-512 2-150 (280)
179 PRK02603 photosystem I assembl 97.2 0.0051 1.1E-07 51.1 11.2 80 436-517 35-121 (172)
180 PRK02603 photosystem I assembl 97.2 0.012 2.7E-07 48.8 13.5 90 366-456 35-126 (172)
181 PF12688 TPR_5: Tetratrico pep 97.2 0.007 1.5E-07 46.0 10.6 89 473-564 7-101 (120)
182 PRK15363 pathogenicity island 97.2 0.011 2.4E-07 46.7 11.6 92 469-564 37-129 (157)
183 KOG2114 Vacuolar assembly/sort 97.2 0.096 2.1E-06 52.5 20.2 73 338-415 709-785 (933)
184 KOG2114 Vacuolar assembly/sort 97.2 0.28 6E-06 49.4 23.3 149 72-227 336-488 (933)
185 PRK10803 tol-pal system protei 97.1 0.0061 1.3E-07 54.0 10.9 93 470-564 146-243 (263)
186 COG4700 Uncharacterized protei 97.1 0.021 4.6E-07 45.9 12.4 126 67-194 86-216 (251)
187 CHL00033 ycf3 photosystem I as 97.1 0.0021 4.5E-08 53.3 7.5 137 15-151 15-166 (168)
188 KOG2280 Vacuolar assembly/sort 97.1 0.39 8.4E-06 47.8 26.5 124 106-231 442-575 (829)
189 PF06239 ECSIT: Evolutionarily 97.1 0.0066 1.4E-07 50.4 9.6 89 261-349 44-153 (228)
190 PLN03088 SGT1, suppressor of 97.0 0.0068 1.5E-07 57.0 11.1 99 408-509 9-110 (356)
191 PF14559 TPR_19: Tetratricopep 97.0 0.0029 6.3E-08 42.9 6.5 63 213-305 2-64 (68)
192 PF13432 TPR_16: Tetratricopep 97.0 0.0035 7.6E-08 42.0 6.7 57 474-531 4-60 (65)
193 PRK10153 DNA-binding transcrip 97.0 0.044 9.4E-07 54.1 16.7 71 466-541 419-489 (517)
194 PF13432 TPR_16: Tetratricopep 97.0 0.0015 3.2E-08 43.8 4.8 60 508-569 3-63 (65)
195 CHL00033 ycf3 photosystem I as 97.0 0.029 6.2E-07 46.5 13.1 62 368-429 37-100 (168)
196 PRK10153 DNA-binding transcrip 97.0 0.021 4.6E-07 56.3 13.9 87 484-573 401-489 (517)
197 PF12921 ATP13: Mitochondrial 97.0 0.0096 2.1E-07 45.8 9.2 102 436-553 2-103 (126)
198 KOG1538 Uncharacterized conser 97.0 0.29 6.2E-06 47.7 20.4 100 453-564 733-843 (1081)
199 PF12688 TPR_5: Tetratrico pep 96.9 0.044 9.6E-07 41.7 12.4 103 373-475 8-114 (120)
200 KOG2796 Uncharacterized conser 96.8 0.053 1.1E-06 46.3 13.2 73 203-302 178-250 (366)
201 PF13414 TPR_11: TPR repeat; P 96.8 0.0061 1.3E-07 41.4 6.8 64 466-530 2-66 (69)
202 KOG0553 TPR repeat-containing 96.8 0.012 2.7E-07 51.2 9.5 98 410-510 90-190 (304)
203 PF13525 YfiO: Outer membrane 96.8 0.1 2.2E-06 44.8 15.0 50 508-557 147-197 (203)
204 PF04840 Vps16_C: Vps16, C-ter 96.7 0.48 1E-05 43.5 30.1 23 138-160 2-24 (319)
205 COG4235 Cytochrome c biogenesi 96.5 0.042 9.2E-07 48.3 11.0 110 433-546 153-268 (287)
206 COG4235 Cytochrome c biogenesi 96.5 0.14 3.1E-06 45.1 14.2 95 466-564 155-253 (287)
207 COG3898 Uncharacterized membra 96.5 0.65 1.4E-05 42.5 27.7 295 266-573 84-398 (531)
208 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.73 1.6E-05 43.0 27.3 422 122-564 30-528 (660)
209 PF03704 BTAD: Bacterial trans 96.5 0.022 4.8E-07 45.8 8.7 71 470-541 65-139 (146)
210 PF13525 YfiO: Outer membrane 96.5 0.48 1E-05 40.6 18.2 173 341-522 12-198 (203)
211 PF13414 TPR_11: TPR repeat; P 96.4 0.017 3.6E-07 39.2 6.7 64 201-292 2-66 (69)
212 PF13371 TPR_9: Tetratricopept 96.4 0.021 4.6E-07 39.3 7.3 56 475-531 3-58 (73)
213 PRK10803 tol-pal system protei 96.4 0.039 8.5E-07 49.0 10.5 91 439-531 146-246 (263)
214 PF12921 ATP13: Mitochondrial 96.4 0.017 3.6E-07 44.5 7.1 46 533-578 47-96 (126)
215 PF13371 TPR_9: Tetratricopept 96.4 0.013 2.8E-07 40.4 5.9 62 509-572 2-64 (73)
216 KOG0550 Molecular chaperone (D 96.4 0.24 5.3E-06 45.5 15.0 52 478-529 260-314 (486)
217 COG1729 Uncharacterized protei 96.3 0.048 1E-06 47.3 10.1 95 469-564 144-241 (262)
218 KOG1130 Predicted G-alpha GTPa 96.3 0.031 6.8E-07 50.9 9.2 52 272-323 25-79 (639)
219 PF13424 TPR_12: Tetratricopep 96.3 0.013 2.8E-07 41.0 5.5 62 503-564 6-72 (78)
220 KOG2796 Uncharacterized conser 96.2 0.42 9.2E-06 41.1 14.9 128 369-496 180-315 (366)
221 KOG1130 Predicted G-alpha GTPa 96.2 0.037 7.9E-07 50.5 9.2 128 301-428 197-342 (639)
222 KOG3941 Intermediate in Toll s 96.2 0.057 1.2E-06 46.6 9.6 98 190-314 53-173 (406)
223 PF03704 BTAD: Bacterial trans 96.2 0.036 7.7E-07 44.6 8.4 70 204-301 64-138 (146)
224 KOG0550 Molecular chaperone (D 96.1 0.78 1.7E-05 42.4 16.7 153 342-496 177-350 (486)
225 COG3898 Uncharacterized membra 96.0 1.2 2.6E-05 40.9 25.3 291 104-431 85-393 (531)
226 PF08631 SPO22: Meiosis protei 95.9 1.2 2.7E-05 40.3 22.4 160 403-563 86-271 (278)
227 PF13424 TPR_12: Tetratricopep 95.9 0.014 3.1E-07 40.8 4.3 63 468-530 6-74 (78)
228 PRK15331 chaperone protein Sic 95.8 0.15 3.2E-06 40.8 9.9 85 445-530 46-133 (165)
229 PF13281 DUF4071: Domain of un 95.7 1.9 4.1E-05 40.3 17.8 73 338-410 145-226 (374)
230 KOG0890 Protein kinase of the 95.6 4.8 0.0001 46.4 23.2 161 40-208 1388-1552(2382)
231 PF09205 DUF1955: Domain of un 95.5 0.68 1.5E-05 35.2 11.5 139 377-534 13-151 (161)
232 PF00637 Clathrin: Region in C 95.3 0.019 4.1E-07 46.0 3.5 85 40-127 12-96 (143)
233 KOG1258 mRNA processing protei 95.2 3.5 7.6E-05 40.4 27.1 181 333-516 296-489 (577)
234 PRK15331 chaperone protein Sic 95.1 0.087 1.9E-06 42.0 6.6 84 45-129 47-133 (165)
235 COG4649 Uncharacterized protei 95.1 0.31 6.6E-06 39.0 9.4 52 412-463 69-121 (221)
236 KOG3941 Intermediate in Toll s 95.1 0.24 5.3E-06 43.0 9.4 90 261-350 64-174 (406)
237 PF04053 Coatomer_WDAD: Coatom 95.1 0.76 1.6E-05 44.5 14.0 161 376-568 271-432 (443)
238 KOG2610 Uncharacterized conser 95.1 0.67 1.5E-05 41.5 12.2 115 347-463 116-236 (491)
239 COG4105 ComL DNA uptake lipopr 94.9 2.3 5E-05 36.9 16.2 56 473-529 173-231 (254)
240 PF10602 RPN7: 26S proteasome 94.8 0.33 7.2E-06 40.2 9.5 97 469-565 38-140 (177)
241 PF13281 DUF4071: Domain of un 94.8 3.5 7.7E-05 38.5 21.2 164 367-530 142-333 (374)
242 KOG0543 FKBP-type peptidyl-pro 94.8 0.29 6.3E-06 45.1 9.7 93 468-564 258-352 (397)
243 KOG1585 Protein required for f 94.7 1.8 4E-05 37.0 13.3 52 508-560 196-249 (308)
244 smart00299 CLH Clathrin heavy 94.7 1.7 3.8E-05 34.5 13.4 111 104-227 10-121 (140)
245 PF10300 DUF3808: Protein of u 94.7 0.67 1.4E-05 45.6 12.8 113 450-564 247-373 (468)
246 smart00299 CLH Clathrin heavy 94.6 1.8 3.9E-05 34.3 14.2 27 206-232 11-37 (140)
247 PF09205 DUF1955: Domain of un 94.6 1.5 3.3E-05 33.4 12.0 139 276-433 14-152 (161)
248 PF04184 ST7: ST7 protein; In 94.6 4.6 0.0001 38.8 17.2 142 375-530 177-323 (539)
249 PF00637 Clathrin: Region in C 94.5 0.01 2.2E-07 47.6 -0.1 129 3-150 11-139 (143)
250 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.19 4.1E-06 47.4 8.0 96 434-534 73-176 (453)
251 PF04053 Coatomer_WDAD: Coatom 94.3 1.4 3E-05 42.7 13.7 86 262-362 345-430 (443)
252 PF13170 DUF4003: Protein of u 94.2 2 4.4E-05 39.0 13.9 50 382-431 78-133 (297)
253 PLN03098 LPA1 LOW PSII ACCUMUL 94.2 0.16 3.4E-06 47.9 6.8 97 67-167 72-176 (453)
254 COG3118 Thioredoxin domain-con 94.1 4 8.6E-05 36.3 16.6 56 210-293 142-197 (304)
255 KOG1920 IkappaB kinase complex 94.0 10 0.00023 40.6 20.7 104 444-564 947-1052(1265)
256 KOG2066 Vacuolar assembly/sort 93.8 8.7 0.00019 39.1 25.2 170 6-202 363-536 (846)
257 KOG2610 Uncharacterized conser 93.7 1.8 3.9E-05 38.9 11.9 152 377-530 114-275 (491)
258 PF13428 TPR_14: Tetratricopep 93.6 0.16 3.6E-06 30.5 4.0 39 37-76 3-41 (44)
259 KOG1258 mRNA processing protei 93.5 8.2 0.00018 38.0 30.4 123 5-130 51-180 (577)
260 PF04097 Nic96: Nup93/Nic96; 93.5 10 0.00023 38.9 22.9 50 100-150 110-159 (613)
261 PF10300 DUF3808: Protein of u 93.4 8.7 0.00019 37.9 20.9 158 173-360 190-373 (468)
262 PF13512 TPR_18: Tetratricopep 93.4 3.1 6.7E-05 32.6 11.9 53 478-531 21-76 (142)
263 KOG1585 Protein required for f 93.2 5.1 0.00011 34.5 14.4 86 439-525 153-250 (308)
264 KOG1920 IkappaB kinase complex 93.1 15 0.00031 39.6 20.2 19 6-24 684-702 (1265)
265 KOG4555 TPR repeat-containing 93.1 0.66 1.4E-05 35.2 7.1 87 44-131 52-145 (175)
266 COG1729 Uncharacterized protei 93.1 0.9 1.9E-05 39.7 9.1 93 438-531 144-244 (262)
267 PF07035 Mic1: Colon cancer-as 93.0 4.2 9.1E-05 33.1 15.8 120 261-392 26-146 (167)
268 KOG0543 FKBP-type peptidyl-pro 92.5 1.9 4.1E-05 40.0 10.7 64 367-431 258-321 (397)
269 PF13428 TPR_14: Tetratricopep 92.3 0.51 1.1E-05 28.3 5.0 28 469-496 3-30 (44)
270 PF13431 TPR_17: Tetratricopep 92.1 0.25 5.3E-06 27.6 3.1 32 58-90 2-33 (34)
271 KOG1941 Acetylcholine receptor 92.1 3.1 6.7E-05 38.0 11.2 123 407-529 128-273 (518)
272 KOG4555 TPR repeat-containing 91.8 2.2 4.8E-05 32.5 8.5 52 478-530 54-105 (175)
273 PF13176 TPR_7: Tetratricopept 91.5 0.42 9E-06 27.1 3.7 22 471-492 3-24 (36)
274 COG4649 Uncharacterized protei 91.4 2.1 4.6E-05 34.5 8.5 51 148-198 144-194 (221)
275 PF13170 DUF4003: Protein of u 91.3 10 0.00022 34.7 14.1 50 280-329 78-133 (297)
276 PRK11906 transcriptional regul 91.3 4.3 9.3E-05 38.8 11.9 143 416-564 273-433 (458)
277 COG4105 ComL DNA uptake lipopr 91.1 9.8 0.00021 33.2 20.1 183 376-570 44-237 (254)
278 PF13176 TPR_7: Tetratricopept 90.9 0.51 1.1E-05 26.8 3.7 24 505-528 2-25 (36)
279 KOG2066 Vacuolar assembly/sort 90.8 21 0.00046 36.5 25.5 50 180-229 365-419 (846)
280 PF10602 RPN7: 26S proteasome 90.6 6.6 0.00014 32.6 11.4 62 368-429 38-101 (177)
281 COG3629 DnrI DNA-binding trans 90.5 3.1 6.7E-05 37.1 9.7 75 336-410 155-236 (280)
282 PF08631 SPO22: Meiosis protei 90.4 14 0.00029 33.6 24.4 93 267-360 39-147 (278)
283 COG3118 Thioredoxin domain-con 90.4 13 0.00027 33.3 18.5 144 409-556 142-290 (304)
284 PF04184 ST7: ST7 protein; In 90.4 4.1 8.9E-05 39.1 10.8 64 502-565 259-322 (539)
285 PRK11906 transcriptional regul 90.4 9.5 0.00021 36.6 13.2 157 367-527 252-432 (458)
286 COG3629 DnrI DNA-binding trans 90.3 2.4 5.2E-05 37.8 8.9 57 438-494 155-214 (280)
287 KOG2396 HAT (Half-A-TPR) repea 90.2 19 0.0004 34.9 36.3 109 453-564 445-556 (568)
288 PF09613 HrpB1_HrpK: Bacterial 90.2 5.3 0.00012 32.0 9.8 49 448-496 22-73 (160)
289 PRK11619 lytic murein transgly 90.0 26 0.00056 36.3 38.5 78 71-150 100-177 (644)
290 cd00923 Cyt_c_Oxidase_Va Cytoc 89.9 1.1 2.5E-05 31.8 5.2 61 483-545 23-83 (103)
291 PRK09687 putative lyase; Provi 89.9 15 0.00032 33.3 24.3 145 68-214 35-185 (280)
292 PF02259 FAT: FAT domain; Int 89.5 19 0.00041 34.0 17.0 66 465-530 144-212 (352)
293 PF13512 TPR_18: Tetratricopep 89.4 9.1 0.0002 30.1 11.5 69 344-412 20-93 (142)
294 PRK15180 Vi polysaccharide bio 88.9 23 0.00049 34.0 20.3 119 46-166 300-421 (831)
295 KOG0276 Vesicle coat complex C 88.8 4.8 0.0001 39.5 10.2 149 83-290 599-747 (794)
296 PF02284 COX5A: Cytochrome c o 88.4 1 2.3E-05 32.4 4.3 60 485-546 28-87 (108)
297 PF10345 Cohesin_load: Cohesin 88.3 34 0.00074 35.4 30.6 175 54-229 40-252 (608)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 88.1 3.2 6.9E-05 29.7 6.4 32 533-564 37-68 (103)
299 PF02284 COX5A: Cytochrome c o 88.1 2.7 5.9E-05 30.4 6.1 32 465-496 43-74 (108)
300 COG0457 NrfG FOG: TPR repeat [ 87.9 17 0.00037 31.5 24.7 214 314-530 38-264 (291)
301 COG2909 MalT ATP-dependent tra 87.6 40 0.00086 35.4 23.0 221 343-564 424-685 (894)
302 KOG1550 Extracellular protein 87.4 36 0.00077 34.7 20.9 113 117-233 228-359 (552)
303 PF00515 TPR_1: Tetratricopept 87.2 1.3 2.8E-05 24.5 3.6 26 470-495 4-29 (34)
304 KOG2062 26S proteasome regulat 87.2 38 0.00082 34.6 30.3 122 445-568 510-636 (929)
305 TIGR02508 type_III_yscG type I 86.9 4.3 9.3E-05 29.2 6.5 86 50-139 20-105 (115)
306 PRK09687 putative lyase; Provi 86.9 24 0.00052 32.0 25.6 126 435-571 141-268 (280)
307 PF07719 TPR_2: Tetratricopept 86.7 0.71 1.5E-05 25.5 2.3 25 505-529 4-28 (34)
308 KOG0276 Vesicle coat complex C 86.5 21 0.00047 35.3 12.9 85 262-361 664-748 (794)
309 KOG1941 Acetylcholine receptor 86.4 13 0.00028 34.2 10.7 123 371-493 127-272 (518)
310 COG1747 Uncharacterized N-term 86.3 34 0.00074 33.3 16.8 93 365-462 65-157 (711)
311 COG4455 ImpE Protein of avirul 85.5 3.4 7.3E-05 34.8 6.3 75 469-547 3-81 (273)
312 PF07721 TPR_4: Tetratricopept 85.4 1.3 2.9E-05 22.7 2.8 20 543-562 6-25 (26)
313 PF07035 Mic1: Colon cancer-as 85.4 19 0.00041 29.4 15.6 45 441-485 94-138 (167)
314 PF13431 TPR_17: Tetratricopep 85.3 0.97 2.1E-05 25.2 2.3 20 502-521 13-32 (34)
315 KOG4570 Uncharacterized conser 85.0 6.4 0.00014 35.2 8.1 103 63-166 57-165 (418)
316 PF07719 TPR_2: Tetratricopept 84.9 2 4.2E-05 23.6 3.6 28 469-496 3-30 (34)
317 TIGR02508 type_III_yscG type I 84.9 13 0.00027 27.0 9.2 78 152-232 21-98 (115)
318 COG2976 Uncharacterized protei 84.3 8.9 0.00019 31.9 8.1 87 45-131 99-189 (207)
319 KOG4570 Uncharacterized conser 84.0 15 0.00033 33.0 9.9 101 329-430 59-164 (418)
320 PF04190 DUF410: Protein of un 83.7 32 0.0007 30.8 14.4 37 169-205 88-124 (260)
321 COG0457 NrfG FOG: TPR repeat [ 83.6 28 0.00061 30.1 26.0 193 367-564 60-262 (291)
322 PF13374 TPR_10: Tetratricopep 83.4 2.6 5.6E-05 24.5 3.9 28 503-530 3-30 (42)
323 PF10579 Rapsyn_N: Rapsyn N-te 83.0 3.5 7.7E-05 28.2 4.5 46 479-524 18-65 (80)
324 PF13374 TPR_10: Tetratricopep 82.8 2.8 6E-05 24.4 3.8 28 468-495 3-30 (42)
325 PF13174 TPR_6: Tetratricopept 82.7 3 6.5E-05 22.6 3.7 24 508-531 6-29 (33)
326 PF11207 DUF2989: Protein of u 82.5 11 0.00023 31.7 8.1 74 483-557 122-197 (203)
327 PF00515 TPR_1: Tetratricopept 82.4 4.5 9.7E-05 22.2 4.4 27 504-530 3-29 (34)
328 TIGR02561 HrpB1_HrpK type III 80.9 26 0.00057 27.8 10.3 50 48-98 23-72 (153)
329 PF13174 TPR_6: Tetratricopept 80.2 1.4 3E-05 24.0 1.7 29 541-569 3-32 (33)
330 PF07163 Pex26: Pex26 protein; 80.1 9 0.00019 33.8 7.1 56 6-62 90-145 (309)
331 KOG2297 Predicted translation 79.9 46 0.001 30.0 13.0 74 312-386 268-341 (412)
332 PF11207 DUF2989: Protein of u 79.8 18 0.0004 30.4 8.6 73 383-456 123-198 (203)
333 PF13762 MNE1: Mitochondrial s 79.8 28 0.00062 27.6 9.5 76 440-515 43-128 (145)
334 PF09613 HrpB1_HrpK: Bacterial 79.7 31 0.00067 27.9 12.1 17 344-360 54-70 (160)
335 COG4455 ImpE Protein of avirul 79.5 10 0.00022 32.1 7.0 75 3-79 5-81 (273)
336 COG2909 MalT ATP-dependent tra 79.2 90 0.0019 33.0 27.7 179 346-527 470-684 (894)
337 KOG4234 TPR repeat-containing 77.1 20 0.00042 30.1 7.8 84 446-531 105-197 (271)
338 PF11846 DUF3366: Domain of un 77.0 9.7 0.00021 32.3 6.7 32 499-530 141-172 (193)
339 PF13181 TPR_8: Tetratricopept 76.5 6.4 0.00014 21.5 3.8 26 470-495 4-29 (34)
340 PF09477 Type_III_YscG: Bacter 76.2 14 0.00029 27.2 5.9 79 50-131 21-99 (116)
341 KOG2063 Vacuolar assembly/sort 75.6 85 0.0018 33.6 13.7 37 110-146 600-636 (877)
342 TIGR03504 FimV_Cterm FimV C-te 75.4 6.5 0.00014 23.5 3.6 26 269-294 4-29 (44)
343 PF13181 TPR_8: Tetratricopept 74.3 8.3 0.00018 21.1 3.9 27 504-530 3-29 (34)
344 PF07163 Pex26: Pex26 protein; 74.2 38 0.00081 30.2 9.2 89 269-357 88-181 (309)
345 TIGR03504 FimV_Cterm FimV C-te 73.9 7.8 0.00017 23.2 3.7 23 473-495 5-27 (44)
346 KOG4648 Uncharacterized conser 73.4 6.8 0.00015 35.5 4.8 54 8-63 106-159 (536)
347 KOG4077 Cytochrome c oxidase, 73.0 19 0.00041 27.4 6.2 70 485-565 67-136 (149)
348 cd08819 CARD_MDA5_2 Caspase ac 72.8 24 0.00052 24.9 6.3 39 183-222 48-86 (88)
349 KOG1550 Extracellular protein 72.7 1.2E+02 0.0025 31.1 24.6 153 274-432 259-428 (552)
350 KOG4234 TPR repeat-containing 72.7 10 0.00022 31.6 5.2 86 44-130 104-197 (271)
351 PF07575 Nucleopor_Nup85: Nup8 72.5 1.2E+02 0.0026 31.1 19.0 59 400-460 404-462 (566)
352 PF04097 Nic96: Nup93/Nic96; 71.9 1.3E+02 0.0028 31.2 20.9 59 71-130 113-181 (613)
353 KOG2396 HAT (Half-A-TPR) repea 71.8 1E+02 0.0023 30.1 28.1 81 15-98 87-168 (568)
354 KOG1464 COP9 signalosome, subu 71.4 73 0.0016 28.2 16.0 117 312-428 40-172 (440)
355 PF10345 Cohesin_load: Cohesin 70.8 1.4E+02 0.003 31.1 31.1 152 11-164 72-253 (608)
356 PF14853 Fis1_TPR_C: Fis1 C-te 69.6 8 0.00017 24.3 3.2 31 507-540 6-36 (53)
357 PHA02875 ankyrin repeat protei 69.2 1.1E+02 0.0024 29.8 12.8 210 273-503 8-231 (413)
358 KOG0890 Protein kinase of the 68.9 2.7E+02 0.0058 33.6 25.3 279 267-564 1423-1728(2382)
359 COG2976 Uncharacterized protei 67.9 73 0.0016 26.8 14.6 54 443-496 133-188 (207)
360 KOG0991 Replication factor C, 67.7 78 0.0017 27.5 9.4 56 456-513 228-283 (333)
361 PF07575 Nucleopor_Nup85: Nup8 67.5 1.5E+02 0.0033 30.4 16.6 69 256-326 397-465 (566)
362 PF06552 TOM20_plant: Plant sp 66.9 18 0.00039 29.8 5.5 46 470-515 31-82 (186)
363 PF13762 MNE1: Mitochondrial s 66.7 64 0.0014 25.7 8.7 51 365-415 78-129 (145)
364 PF10366 Vps39_1: Vacuolar sor 65.1 50 0.0011 24.7 7.2 27 469-495 41-67 (108)
365 KOG4077 Cytochrome c oxidase, 64.7 21 0.00046 27.2 5.0 54 522-576 69-124 (149)
366 TIGR02561 HrpB1_HrpK type III 64.4 72 0.0016 25.5 11.2 34 344-377 54-87 (153)
367 KOG3364 Membrane protein invol 64.0 68 0.0015 25.1 8.5 59 471-530 36-99 (149)
368 COG4785 NlpI Lipoprotein NlpI, 63.9 95 0.0021 26.7 15.1 172 54-233 84-268 (297)
369 KOG4648 Uncharacterized conser 63.8 50 0.0011 30.3 8.0 47 411-459 107-154 (536)
370 PF10579 Rapsyn_N: Rapsyn N-te 63.5 12 0.00027 25.7 3.4 49 513-561 17-66 (80)
371 COG3947 Response regulator con 63.4 31 0.00067 30.9 6.5 58 471-529 283-340 (361)
372 PRK11619 lytic murein transgly 62.8 2E+02 0.0043 30.0 37.9 115 347-464 254-374 (644)
373 KOG0403 Neoplastic transformat 62.7 1.5E+02 0.0033 28.6 21.4 70 338-411 513-584 (645)
374 smart00028 TPR Tetratricopepti 62.6 12 0.00027 19.2 3.1 25 505-529 4-28 (34)
375 KOG1464 COP9 signalosome, subu 62.5 1.1E+02 0.0024 27.1 18.4 250 215-494 40-330 (440)
376 PF11817 Foie-gras_1: Foie gra 62.3 21 0.00046 31.7 5.8 55 507-561 183-241 (247)
377 PF09477 Type_III_YscG: Bacter 62.2 62 0.0014 24.0 8.8 80 150-232 20-99 (116)
378 PF02259 FAT: FAT domain; Int 61.8 1.4E+02 0.0031 28.0 22.2 64 332-395 144-213 (352)
379 PF11848 DUF3368: Domain of un 61.7 35 0.00075 20.9 5.0 32 478-509 13-44 (48)
380 PRK15180 Vi polysaccharide bio 61.5 72 0.0016 30.9 9.0 120 408-530 296-419 (831)
381 cd08819 CARD_MDA5_2 Caspase ac 61.4 25 0.00053 24.9 4.6 66 54-121 21-86 (88)
382 PF14689 SPOB_a: Sensor_kinase 60.5 16 0.00036 23.9 3.6 22 543-564 28-49 (62)
383 PF04910 Tcf25: Transcriptiona 60.3 1.6E+02 0.0034 28.1 14.2 57 474-530 110-167 (360)
384 PRK10564 maltose regulon perip 60.2 18 0.00039 32.6 4.8 45 262-306 254-299 (303)
385 PF09986 DUF2225: Uncharacteri 60.2 90 0.002 27.0 9.0 23 542-564 169-191 (214)
386 PF13934 ELYS: Nuclear pore co 60.2 1.2E+02 0.0026 26.6 11.0 54 339-393 113-167 (226)
387 PRK13342 recombination factor 60.2 1.7E+02 0.0038 28.5 14.5 19 215-233 243-261 (413)
388 PRK13184 pknD serine/threonine 60.1 2.7E+02 0.0058 30.6 24.7 376 106-527 480-896 (932)
389 KOG3807 Predicted membrane pro 60.0 99 0.0021 28.3 9.2 57 472-530 280-339 (556)
390 KOG1586 Protein required for f 59.7 1.2E+02 0.0026 26.5 16.9 24 377-400 165-188 (288)
391 cd00280 TRFH Telomeric Repeat 59.0 35 0.00076 28.2 5.7 22 76-97 117-138 (200)
392 PF13929 mRNA_stabil: mRNA sta 58.3 1.4E+02 0.0031 26.9 16.9 112 279-390 143-262 (292)
393 PF14689 SPOB_a: Sensor_kinase 57.6 23 0.00049 23.2 3.8 46 484-531 7-52 (62)
394 PF06552 TOM20_plant: Plant sp 56.7 38 0.00083 27.9 5.7 72 452-531 51-136 (186)
395 KOG0991 Replication factor C, 56.0 1.4E+02 0.003 26.1 9.9 59 477-537 202-272 (333)
396 PF08311 Mad3_BUB1_I: Mad3/BUB 55.5 96 0.0021 24.0 8.8 43 485-527 81-124 (126)
397 PF11663 Toxin_YhaV: Toxin wit 55.3 18 0.0004 27.9 3.5 34 477-512 105-138 (140)
398 KOG2063 Vacuolar assembly/sort 54.7 3.1E+02 0.0067 29.7 22.7 130 204-346 506-638 (877)
399 COG5108 RPO41 Mitochondrial DN 54.6 2.6E+02 0.0056 28.7 12.0 121 207-362 33-161 (1117)
400 PF11848 DUF3368: Domain of un 54.5 48 0.001 20.3 5.2 32 377-408 13-44 (48)
401 KOG3364 Membrane protein invol 54.2 68 0.0015 25.1 6.2 23 473-495 77-99 (149)
402 PF12862 Apc5: Anaphase-promot 53.6 55 0.0012 23.6 5.8 54 478-531 9-70 (94)
403 PF11846 DUF3366: Domain of un 53.3 28 0.0006 29.5 4.8 58 40-97 113-171 (193)
404 COG0735 Fur Fe2+/Zn2+ uptake r 53.2 63 0.0014 25.8 6.5 61 490-552 9-69 (145)
405 KOG2908 26S proteasome regulat 53.1 1.2E+02 0.0027 28.0 8.6 29 549-577 244-272 (380)
406 KOG2659 LisH motif-containing 52.6 1.2E+02 0.0025 26.3 8.1 97 433-529 23-130 (228)
407 COG3947 Response regulator con 52.3 1.8E+02 0.004 26.3 15.6 40 118-159 150-189 (361)
408 PF07064 RIC1: RIC1; InterPro 52.2 1.8E+02 0.0038 26.1 12.4 25 3-27 86-110 (258)
409 PRK10564 maltose regulon perip 52.1 33 0.00072 30.9 5.1 44 364-407 254-298 (303)
410 COG0735 Fur Fe2+/Zn2+ uptake r 51.9 85 0.0018 25.1 7.0 37 414-450 33-69 (145)
411 PF10255 Paf67: RNA polymerase 51.7 1.2E+02 0.0026 29.2 8.9 68 204-291 124-191 (404)
412 PF02184 HAT: HAT (Half-A-TPR) 50.7 16 0.00035 20.0 1.8 20 554-573 3-23 (32)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 50.7 1.2E+02 0.0025 23.6 8.9 45 219-289 80-124 (126)
414 KOG2908 26S proteasome regulat 50.6 93 0.002 28.7 7.5 53 443-495 82-143 (380)
415 KOG4567 GTPase-activating prot 50.4 2E+02 0.0044 26.3 10.0 57 386-447 263-319 (370)
416 smart00638 LPD_N Lipoprotein N 50.3 3.1E+02 0.0066 28.3 20.8 60 69-130 309-369 (574)
417 KOG1586 Protein required for f 49.8 1.8E+02 0.0039 25.5 16.9 95 442-539 119-229 (288)
418 KOG4507 Uncharacterized conser 49.7 52 0.0011 32.7 6.3 112 87-199 590-704 (886)
419 PRK11639 zinc uptake transcrip 49.6 77 0.0017 26.1 6.7 36 416-451 40-75 (169)
420 KOG2422 Uncharacterized conser 48.7 1E+02 0.0022 30.7 8.0 118 12-130 304-448 (665)
421 KOG4642 Chaperone-dependent E3 48.4 86 0.0019 27.4 6.6 118 446-565 20-144 (284)
422 cd00280 TRFH Telomeric Repeat 48.2 1.2E+02 0.0027 25.2 7.2 44 452-495 85-139 (200)
423 PF09670 Cas_Cas02710: CRISPR- 47.0 2.7E+02 0.0059 26.8 11.6 54 376-430 141-198 (379)
424 COG4785 NlpI Lipoprotein NlpI, 46.0 2E+02 0.0043 24.9 15.7 62 264-328 99-162 (297)
425 PF11663 Toxin_YhaV: Toxin wit 45.2 34 0.00074 26.5 3.5 33 112-146 106-138 (140)
426 PRK10941 hypothetical protein; 45.2 2.3E+02 0.0049 25.7 9.3 59 471-531 185-244 (269)
427 PF14669 Asp_Glu_race_2: Putat 45.0 1.9E+02 0.0041 24.4 14.3 26 304-329 137-162 (233)
428 PF14853 Fis1_TPR_C: Fis1 C-te 44.2 81 0.0017 19.9 4.6 29 473-503 7-35 (53)
429 PF08424 NRDE-2: NRDE-2, neces 43.5 2.8E+02 0.006 25.9 11.7 154 117-272 47-227 (321)
430 KOG4567 GTPase-activating prot 43.5 2.6E+02 0.0057 25.6 9.5 43 285-327 264-306 (370)
431 KOG2471 TPR repeat-containing 43.2 3.4E+02 0.0073 26.8 13.2 39 277-315 30-68 (696)
432 PF09454 Vps23_core: Vps23 cor 42.7 86 0.0019 20.8 4.7 51 32-83 5-55 (65)
433 PF04190 DUF410: Protein of un 42.0 2.6E+02 0.0056 25.1 18.5 27 333-359 89-115 (260)
434 PRK11639 zinc uptake transcrip 40.3 1.7E+02 0.0037 24.1 7.4 49 470-518 28-76 (169)
435 PRK09462 fur ferric uptake reg 39.8 1.9E+02 0.0042 23.1 7.5 60 391-451 7-67 (148)
436 KOG0686 COP9 signalosome, subu 38.5 3.7E+02 0.008 25.8 14.3 63 265-327 151-215 (466)
437 PF03745 DUF309: Domain of unk 38.3 49 0.0011 21.7 3.1 48 9-57 9-61 (62)
438 PF09670 Cas_Cas02710: CRISPR- 38.2 3.7E+02 0.0081 25.9 11.5 57 271-328 138-198 (379)
439 PF12926 MOZART2: Mitotic-spin 38.0 1.5E+02 0.0032 21.1 7.0 41 320-360 29-69 (88)
440 PRK09462 fur ferric uptake reg 37.1 1.6E+02 0.0035 23.6 6.6 47 472-518 21-68 (148)
441 PF11817 Foie-gras_1: Foie gra 36.9 1.7E+02 0.0038 26.0 7.4 57 472-528 183-244 (247)
442 PF12793 SgrR_N: Sugar transpo 36.9 1.9E+02 0.0041 22.0 7.3 74 19-94 3-94 (115)
443 PF09868 DUF2095: Uncharacteri 36.7 87 0.0019 23.4 4.3 42 40-82 66-107 (128)
444 PF10255 Paf67: RNA polymerase 36.4 1.3E+02 0.0028 29.0 6.7 59 506-564 126-190 (404)
445 PRK10941 hypothetical protein; 36.3 1.8E+02 0.004 26.2 7.4 69 504-575 183-256 (269)
446 COG5108 RPO41 Mitochondrial DN 36.0 3.8E+02 0.0083 27.6 9.7 75 304-378 33-115 (1117)
447 PRK12356 glutaminase; Reviewed 35.8 3.4E+02 0.0074 25.2 8.9 21 354-374 86-106 (319)
448 KOG1114 Tripeptidyl peptidase 35.6 6.2E+02 0.013 27.6 12.8 78 486-564 1215-1292(1304)
449 PRK13342 recombination factor 35.3 4.4E+02 0.0094 25.8 17.9 113 281-411 154-275 (413)
450 KOG4507 Uncharacterized conser 35.0 1.6E+02 0.0034 29.7 7.0 86 147-232 618-706 (886)
451 PF09454 Vps23_core: Vps23 cor 34.7 85 0.0018 20.8 3.8 48 465-513 6-53 (65)
452 cd07153 Fur_like Ferric uptake 34.5 94 0.002 23.4 4.7 41 375-415 9-49 (116)
453 PF13929 mRNA_stabil: mRNA sta 34.5 3.6E+02 0.0078 24.6 22.6 56 432-487 198-258 (292)
454 PF12862 Apc5: Anaphase-promot 34.2 1.3E+02 0.0028 21.7 5.2 53 512-564 8-67 (94)
455 PF10366 Vps39_1: Vacuolar sor 34.2 2E+02 0.0043 21.5 7.7 27 266-292 41-67 (108)
456 smart00386 HAT HAT (Half-A-TPR 33.9 75 0.0016 16.5 3.6 26 50-76 2-27 (33)
457 KOG1498 26S proteasome regulat 33.7 4.3E+02 0.0093 25.3 15.7 88 439-529 134-239 (439)
458 PHA02875 ankyrin repeat protei 33.7 4.5E+02 0.0098 25.5 16.3 20 77-96 72-91 (413)
459 PF11838 ERAP1_C: ERAP1-like C 32.4 4.1E+02 0.0089 24.6 17.8 145 417-565 146-306 (324)
460 PF11768 DUF3312: Protein of u 32.2 2.4E+02 0.0053 28.2 7.8 55 441-495 413-472 (545)
461 PF01475 FUR: Ferric uptake re 31.7 76 0.0016 24.2 3.8 43 372-414 13-55 (120)
462 cd07153 Fur_like Ferric uptake 31.4 1.3E+02 0.0029 22.6 5.1 47 473-519 6-52 (116)
463 PF07840 FadR_C: FadR C-termin 31.0 1.1E+02 0.0023 25.0 4.5 16 345-360 129-144 (164)
464 PRK13800 putative oxidoreducta 30.7 7.7E+02 0.017 27.3 28.3 250 296-570 632-884 (897)
465 cd08326 CARD_CASP9 Caspase act 30.6 1.3E+02 0.0027 21.3 4.4 33 278-314 44-76 (84)
466 KOG4642 Chaperone-dependent E3 30.2 3.9E+02 0.0084 23.6 9.6 118 410-529 19-144 (284)
467 PF12796 Ank_2: Ankyrin repeat 29.8 2E+02 0.0043 20.1 5.7 12 83-94 7-18 (89)
468 PF13934 ELYS: Nuclear pore co 29.4 3.9E+02 0.0084 23.4 15.6 122 440-569 80-203 (226)
469 PF02847 MA3: MA3 domain; Int 29.4 1.2E+02 0.0027 22.6 4.6 62 268-331 6-69 (113)
470 PRK12357 glutaminase; Reviewed 29.3 4.7E+02 0.01 24.4 9.3 21 354-374 90-110 (326)
471 PF10475 DUF2450: Protein of u 29.0 4.2E+02 0.0091 24.3 8.7 26 369-394 130-155 (291)
472 TIGR03581 EF_0839 conserved hy 28.9 2.8E+02 0.0062 23.8 6.6 78 349-426 136-233 (236)
473 PF11123 DNA_Packaging_2: DNA 28.8 1E+02 0.0023 20.8 3.3 34 49-83 11-44 (82)
474 PF14669 Asp_Glu_race_2: Putat 28.4 3.7E+02 0.0079 22.8 13.8 55 472-526 137-205 (233)
475 TIGR02270 conserved hypothetic 27.7 5.8E+02 0.013 24.9 22.1 238 38-325 41-278 (410)
476 PF01475 FUR: Ferric uptake re 27.6 1.3E+02 0.0028 22.9 4.5 45 472-516 12-56 (120)
477 PF12926 MOZART2: Mitotic-spin 27.2 2.3E+02 0.0051 20.1 7.3 39 422-460 29-67 (88)
478 cd08326 CARD_CASP9 Caspase act 27.0 2.2E+02 0.0048 20.1 5.1 40 182-221 41-80 (84)
479 PRK09857 putative transposase; 25.5 4.4E+02 0.0095 24.2 8.1 65 267-332 209-273 (292)
480 TIGR03814 Gln_ase glutaminase 25.4 5.3E+02 0.012 23.8 8.3 20 354-373 74-93 (300)
481 PF04762 IKI3: IKI3 family; I 25.0 9.8E+02 0.021 26.6 12.9 183 176-361 699-928 (928)
482 smart00777 Mad3_BUB1_I Mad3/BU 25.0 3.3E+02 0.0072 21.1 7.6 41 486-526 82-123 (125)
483 smart00777 Mad3_BUB1_I Mad3/BU 24.9 3.3E+02 0.0072 21.1 8.5 41 521-562 82-123 (125)
484 PRK14956 DNA polymerase III su 24.9 6.2E+02 0.013 25.3 9.3 100 383-502 183-283 (484)
485 PF02847 MA3: MA3 domain; Int 24.7 2.5E+02 0.0054 20.9 5.6 26 338-363 6-31 (113)
486 COG5071 RPN5 26S proteasome re 24.2 5.6E+02 0.012 23.5 11.1 179 393-578 44-256 (439)
487 COG4003 Uncharacterized protei 24.1 1.8E+02 0.0039 20.2 3.9 36 40-76 36-71 (98)
488 PF15297 CKAP2_C: Cytoskeleton 24.0 5.5E+02 0.012 24.2 8.1 61 453-513 120-186 (353)
489 smart00804 TAP_C C-terminal do 23.9 74 0.0016 21.0 2.1 22 14-35 40-61 (63)
490 KOG2659 LisH motif-containing 23.8 4.9E+02 0.011 22.7 8.4 105 386-494 13-130 (228)
491 PF11838 ERAP1_C: ERAP1-like C 23.6 5.9E+02 0.013 23.5 18.0 80 316-395 147-230 (324)
492 cd08780 Death_TRADD Death Doma 23.5 2.8E+02 0.0061 19.8 6.1 57 502-561 32-88 (90)
493 COG0790 FOG: TPR repeat, SEL1 23.4 5.7E+02 0.012 23.3 21.4 50 350-399 93-146 (292)
494 PF13646 HEAT_2: HEAT repeats; 23.0 2.7E+02 0.0057 19.3 7.0 16 501-516 44-59 (88)
495 COG2178 Predicted RNA-binding 23.0 4.7E+02 0.01 22.2 8.5 19 513-531 132-150 (204)
496 TIGR03581 EF_0839 conserved hy 23.0 2.1E+02 0.0045 24.6 4.9 43 217-279 136-178 (236)
497 cd07229 Pat_TGL3_like Triacylg 23.0 7E+02 0.015 24.2 9.0 26 458-483 228-253 (391)
498 PF12069 DUF3549: Protein of u 23.0 6.4E+02 0.014 23.7 15.5 31 500-530 228-258 (340)
499 PHA03100 ankyrin repeat protei 22.7 7.7E+02 0.017 24.5 12.9 146 41-196 38-198 (480)
500 COG5159 RPN6 26S proteasome re 22.4 6E+02 0.013 23.2 19.2 202 208-429 9-234 (421)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.7e-86 Score=688.13 Aligned_cols=574 Identities=35% Similarity=0.621 Sum_probs=560.6
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
.+|.+++.|++.|++++|+.+|+.|.+. |.+|+..+|..++.+|.+.+..+.+.+++..+.+.+..++...++.++..|
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 3789999999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred HccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHH
Q 043608 81 GKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++.
T Consensus 132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.+.+.|+.||..+++.|+.+|++.|++++|.++|++|+++|..+||++|.+|++.|++++|+++|++|.+.|+ .||..|
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~-~Pd~~t 290 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV-DPDLMT 290 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHH----------------------------------------HHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 241 FGSVFSACSNF----------------------------------------ARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 241 ~~~~l~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
|+.++.+|... +.++|+++..||..+||.+|.+|++.|++
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCH
Confidence 99999887643 88899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.++++|++.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
..+ |..+|+.++.+|++.|+.++|..+|++|.. +++||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++
T Consensus 451 ~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 451 PEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred CCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 875 999999999999999999999999999986 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHH
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEE 520 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 520 (579)
+|+++|+++|++++|.++|+.+ .||..+|++++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCCChhHhhhhhcC
Q 043608 521 GLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSLLAS 579 (579)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 579 (579)
|.++|+.|.+.+|+.|+..+|..++++|.+.|++++|.+++++|+.+||..+|++||+|
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~a 666 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999977799999999999999999999999999999999999999999999874
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-76 Score=616.07 Aligned_cols=531 Identities=28% Similarity=0.464 Sum_probs=511.3
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
+||++|++|++.|++++|+++|++|... |+.||..||+.++.+|+..+++..+.+++..+.+.|+.|+..+++.++.+|
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 5999999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHH
Q 043608 81 GKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++.
T Consensus 233 ~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.+.+.|+.||..+|+.++.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++|.+.|+ .||..|
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~Pd~~t 391 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV-SPDEIT 391 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHH----------------------------------------HHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 241 FGSVFSACSNF----------------------------------------ARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 241 ~~~~l~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+..++.+|++. |..+|+++.++|..+|+.+|.+|++.|+.
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCH
Confidence 99999887533 88899999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
++|+++|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+
T Consensus 472 ~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999986 6999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHH-HcCCCCchhHH
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYIT-KTGLAFDVFVM 439 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~ 439 (579)
.||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|
T Consensus 551 --~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 551 --EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999999 78999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCC-CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCc
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFME-NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGL 517 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 517 (579)
++++++|++.|++++|.+++++|. +||..+|++|+.+|...|+.+.+....+++.+. .|+ ...|..+.+.|+..|+
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCC
Confidence 999999999999999999999996 899999999999999999999999999998874 554 5678888899999999
Q ss_pred hHHHHHHHHHHHHhhCCCCCcc
Q 043608 518 VEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
+++|.++.+.|++. |+.+++-
T Consensus 707 ~~~a~~vr~~M~~~-g~~k~~g 727 (857)
T PLN03077 707 WDEVARVRKTMREN-GLTVDPG 727 (857)
T ss_pred hHHHHHHHHHHHHc-CCCCCCC
Confidence 99999999999988 8888764
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-72 Score=574.33 Aligned_cols=528 Identities=14% Similarity=0.171 Sum_probs=406.6
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG 81 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (579)
|..++..+++.|++++|+++|+.|.+.+-.+++..++..++..|.+.|.+++|..+++.|.. |+..+|+.++.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 55667777777777777777777777633456666777777777777777777777777752 77777777777777
Q ss_pred ccCChhhHHHhhcCCC----CCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHH
Q 043608 82 KCGSLEDARMGFDKMP----QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQ 157 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 157 (579)
+.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 7777777777777776 367777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC------CCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 158 LHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA------RKDVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777777774 357777777777777777777777777777777
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc
Q 043608 232 GAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG 311 (579)
Q Consensus 232 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 311 (579)
|+ .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 609 gi---------------------------~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 609 NI---------------------------KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred CC---------------------------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 77 777788888888888888888888888888888888888888888888888
Q ss_pred ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 312 RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
.|++++|.++++.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++| +..||..+||.+|.+|++.|++++|.++
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888776 4567888888888888888888888888
Q ss_pred HHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh
Q 043608 389 FSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVV 468 (579)
Q Consensus 389 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 468 (579)
|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++..|.+ ++++|..+.+.+...+.
T Consensus 742 f~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~- 818 (1060)
T PLN03218 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS- 818 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc-
Confidence 888888888888888888888888888888888888888888888888888887765432 34444444332221110
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
.......+..+.|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|... +..|+..+|+.|++++
T Consensus 819 -----g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 819 -----GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGF 892 (1060)
T ss_pred -----cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhh
Confidence 0011112234679999999999999999999999998888999999999999988766 8888999999999998
Q ss_pred HhcCChhHHHHHHHhh---cCCCChh
Q 043608 549 ARAGCVHEAEDFINQM---ACDADIV 571 (579)
Q Consensus 549 ~~~g~~~~A~~~~~~~---~~~~~~~ 571 (579)
.+. .++|..++++| +..|+..
T Consensus 893 ~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 432 36899999999 6777765
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-69 Score=550.39 Aligned_cols=510 Identities=14% Similarity=0.166 Sum_probs=415.7
Q ss_pred CCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCC-CCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHh
Q 043608 30 NIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKC-QPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMI 108 (579)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 108 (579)
+..++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|..||..+|+.++
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777888999999999999999999999999884 567778888999999999999999999999999999999999
Q ss_pred hhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHH
Q 043608 109 AGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRIL 188 (579)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 188 (579)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHhcccCC----CcHhhHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCCCChHhHHHHHHHHHHHHHHHhhcCCCC
Q 043608 189 DARNVFSGIAR----KDVTSWGSMIAAFSKLGYELEALCHFNEMLH--HGAYQPNEFIFGSVFSACSNFARILFNEIDSP 262 (579)
Q Consensus 189 ~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 262 (579)
+|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+ .|
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi---------------------------~P 577 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI---------------------------DP 577 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC---------------------------CC
Confidence 88888877753 5777888888888888888888888888865 455 77
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 043608 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILT 342 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (579)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888788888888
Q ss_pred HHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHH
Q 043608 343 MYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEM 419 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 419 (579)
+|++.|++++|.++|++| +..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee 737 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 888888888887777776 55677777888888888888888888888887777777787788888888888888888
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 420 VTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME----NPDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 420 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|. .||..+|++++..|. +++++|.++.+.+..
T Consensus 738 Alelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh
Confidence 88888877777777777777777777777777777777777776 377777777775443 235555554443332
Q ss_pred CCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh---cCCCChhH
Q 043608 496 LGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM---ACDADIVV 572 (579)
Q Consensus 496 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~ 572 (579)
-+ + .......+..+.|..+|++|.+. |+.||..+|..++.++.+.+..+.+..+++.| +..|+..+
T Consensus 816 f~--~--------g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~ 884 (1060)
T PLN03218 816 FD--S--------GRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSN 884 (1060)
T ss_pred hh--c--------cccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhh
Confidence 11 0 00111223346799999999998 99999999999999999999999999999999 45677899
Q ss_pred hhhhhcC
Q 043608 573 WKSLLAS 579 (579)
Q Consensus 573 ~~~l~~~ 579 (579)
|++||.|
T Consensus 885 y~~Li~g 891 (1060)
T PLN03218 885 LSTLVDG 891 (1060)
T ss_pred hHHHHHh
Confidence 9999864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.4e-69 Score=547.42 Aligned_cols=471 Identities=27% Similarity=0.428 Sum_probs=422.8
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
.|+++|..|.+.|++++|+++|++|....+..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 38999999999999999999999998875678999999999999999999999999999999999999999999999999
Q ss_pred HccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHH
Q 043608 81 GKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
++.|++++|.++|++|++||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+.+++.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.++|+.+||+++.+|++.|++++|+++|++|.+.|+
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~------- 321 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV------- 321 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------
Confidence 9999999999999999999999999998888888888777777777777777766666666666666665555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHH
Q 043608 241 FGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQ 320 (579)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 320 (579)
.||..+|+.++ .+|++.|+++.|.+
T Consensus 322 --------------------~pd~~t~~~ll-----------------------------------~a~~~~g~~~~a~~ 346 (697)
T PLN03081 322 --------------------SIDQFTFSIMI-----------------------------------RIFSRLALLEHAKQ 346 (697)
T ss_pred --------------------CCCHHHHHHHH-----------------------------------HHHHhccchHHHHH
Confidence 44444455444 44555555555555
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 043608 321 VHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD 400 (579)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 400 (579)
++..|.+.|+.|+..+++.++++|++.|++++|.++|++|.. ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 555555556667778888899999999999999999999976 4999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC-CCChhhHHHHHHHHH
Q 043608 401 HITFNDVMGACAKMASLEMVTQLHCYITK-TGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME-NPDVVSWSSLILGYA 478 (579)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~ 478 (579)
..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++++++. +|+..+|++++.+|.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999985 6999999999999999999999999999999997 699999999999999
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 537 (579)
..|+++.|..+++++.+. .|+ ..+|..+++.|++.|++++|.++++.|.+. |+.+.
T Consensus 506 ~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred HcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 999999999999999764 564 679999999999999999999999999988 77543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-63 Score=508.58 Aligned_cols=419 Identities=29% Similarity=0.507 Sum_probs=378.4
Q ss_pred CCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCC-CCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHH
Q 043608 98 QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSG-VMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNA 176 (579)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (579)
.++..+|+.++.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHh
Q 043608 177 LIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILF 256 (579)
Q Consensus 177 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 256 (579)
++.+|++.|+++.|.++|++|+++|..+|+.++.+|++.|++++|+++|++|.+.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~----------------------- 220 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS----------------------- 220 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----------------------
Confidence 999999999999999999888877777777777777777766666666666665555
Q ss_pred hcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchh
Q 043608 257 NEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPV 336 (579)
Q Consensus 257 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (579)
.|+..||..++.+|++.|..+.+.+++..+.+.|+.++..+
T Consensus 221 ---------------------------------------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 221 ---------------------------------------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred ---------------------------------------CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 44555555555555555555555555555666667777888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC
Q 043608 337 CNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS 416 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 416 (579)
++.++.+|++.|++++|.++|++|..+ |..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 888999999999999999999999765 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 417 LEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
+++|.+++..|.+.|+.||..+++.|+++|+++|++++|.++|++|.+||..+||+|+.+|++.|+.++|.++|++|.+.
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCCChhHhhhh
Q 043608 497 GVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADIVVWKSL 576 (579)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 576 (579)
|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|.+.|++++|.+++++|+.+|+..+|++|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~L 500 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAAL 500 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999987799999999999999999999999999999999999999999999
Q ss_pred hcC
Q 043608 577 LAS 579 (579)
Q Consensus 577 ~~~ 579 (579)
++|
T Consensus 501 l~a 503 (697)
T PLN03081 501 LTA 503 (697)
T ss_pred HHH
Confidence 864
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-33 Score=301.14 Aligned_cols=546 Identities=13% Similarity=0.051 Sum_probs=441.4
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK 82 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (579)
..+...+.+.|++++|+..++.+... .+.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+..
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGL--DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 45667888999999999999998874 45567788888999999999999999999998765 5567788888889999
Q ss_pred cCChhhHHHhhcCCCC--C-CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHH
Q 043608 83 CGSLEDARMGFDKMPQ--R-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLH 159 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 159 (579)
.|++++|.+.++.+.+ | +...+..++..+.+.|++++|.++++.+... .+++..++..+...+...|++++|.+.+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988764 2 3345667778899999999999999999875 3556778899999999999999999999
Q ss_pred HHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 043608 160 AHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQP 236 (579)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p 236 (579)
+++.+.. +.+...+..+...+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|..+++++...+ ..
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~ 565 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQ 565 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc
Confidence 9998764 34566777888999999999999999988754 366788889999999999999999999998764 23
Q ss_pred ChHhHHHHHHHHHHH-----HHHHhhcC---CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 043608 237 NEFIFGSVFSACSNF-----ARILFNEI---DSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCA 308 (579)
Q Consensus 237 ~~~~~~~~l~~~~~~-----~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (579)
+...+..+...+... +...++.+ .+.+...|..+..++...|++++|...|+.+.+.. +.+...+..+...
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 333333333333322 33444433 24567788889999999999999999999887653 3355667778888
Q ss_pred hhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHH
Q 043608 309 CIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELG--KNADSVSWNSIIAACLQHNQAEELF 386 (579)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 386 (579)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|.++++.+. .+++...+..+...+...|++++|.
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHH
Confidence 888999999999999888765 4457788888899999999999999998872 2345667888888889999999999
Q ss_pred HHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--
Q 043608 387 RLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-- 464 (579)
Q Consensus 387 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 464 (579)
..|+++...+ |+..++..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 724 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 724 QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 9999988864 555777788888999999999999999888764 34678888888999999999999999998863
Q ss_pred -CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHH
Q 043608 465 -PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSC 543 (579)
Q Consensus 465 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
++...++.+...+...|+ ++|+.+++++.+.. +-+..++..+...+...|++++|..+++++.+. + +.+..++..
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~-~~~~~~~~~ 876 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-A-PEAAAIRYH 876 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CCChHHHHH
Confidence 456778888899999998 88999999988752 234557778888889999999999999999874 3 337788888
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 043608 544 VVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+|.+.|+.++|.+++++|
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999887
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-32 Score=294.53 Aligned_cols=555 Identities=13% Similarity=0.007 Sum_probs=459.9
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
-..+...|++++|...|+.+... .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|+
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 44677899999999999999875 45566677888888999999999999999998776 6678889999999999999
Q ss_pred hhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 86 LEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 86 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
+++|.+.|+++.+ .+...+..+...+...|++++|.+.++.+.+.+ +........++..+...|++++|.++++.+
T Consensus 379 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999998764 345567788888999999999999999998764 223455667788899999999999999998
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChH
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEF 239 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 239 (579)
.... +.+..++..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.+ +.+..
T Consensus 458 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 534 (899)
T TIGR02917 458 EKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLR 534 (899)
T ss_pred HHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHH
Confidence 8753 45678899999999999999999999998754 356678888999999999999999999998874 23344
Q ss_pred hHHHHHHHHHHH-----HHHHhhcC---CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc
Q 043608 240 IFGSVFSACSNF-----ARILFNEI---DSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG 311 (579)
Q Consensus 240 ~~~~~l~~~~~~-----~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 311 (579)
.+..+...+... +...+++. .+.+...+..++..+.+.|++++|..+++.+... .+.+...+..+...+..
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 444443333222 44444443 3456677888999999999999999999999865 35567788899999999
Q ss_pred ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 043608 312 RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GK-NADSVSWNSIIAACLQHNQAEELFRLF 389 (579)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 389 (579)
.|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|+++ .. +.+..++..+...+...|++++|.+++
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998875 446677888999999999999999999987 22 335778999999999999999999999
Q ss_pred HHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CC
Q 043608 390 SRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PD 466 (579)
Q Consensus 390 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 466 (579)
+.+.+.+ +++...+..+...+...|++++|...++.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+ .+
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9998875 5567788888899999999999999999998765 4446777899999999999999999998863 56
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 467 VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
...+..+...|...|++++|.++|+++.+.+ +++...+..+...+...|+ ++|+.+++++... .+-++.++..+..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~ 845 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGW 845 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 7788889999999999999999999999874 4567889999999999999 8899999999864 2334557778899
Q ss_pred HHHhcCChhHHHHHHHhh-cCCC-ChhHhhhh
Q 043608 547 LLARAGCVHEAEDFINQM-ACDA-DIVVWKSL 576 (579)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 576 (579)
++...|++++|.++++++ ...| +..++..+
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 999999999999999999 3333 55555544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.9e-24 Score=229.29 Aligned_cols=541 Identities=11% Similarity=-0.003 Sum_probs=332.2
Q ss_pred hHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHH-HhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 7 SSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLIS-ACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
+.+.+.|++++|++.|+.+... .+++...-..... .....|+.++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCC
Confidence 4678899999999999999873 4444321111112 2234589999999999999886 6677888899999999999
Q ss_pred hhhHHHhhcCCCCCCe------ee-----------------hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHH
Q 043608 86 LEDARMGFDKMPQRNV------VS-----------------WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSI 142 (579)
Q Consensus 86 ~~~A~~~~~~~~~~~~------~~-----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l 142 (579)
.++|+..++++.+... .. +...+..+-.....+.|...+.+.......|+.. ....
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHH
Confidence 9999999988743110 00 1111111111111223333333332221111110 0112
Q ss_pred HHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcH-----hhHH-----------
Q 043608 143 IKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDV-----TSWG----------- 206 (579)
Q Consensus 143 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~----------- 206 (579)
...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|+..|++..+.+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 233444555555555555555443 22344455555555555555555555554432110 0110
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChH-hHHHHHHHHHHH-----HHHHhhcCC---CCChhhHHHHHHHHHc
Q 043608 207 -SMIAAFSKLGYELEALCHFNEMLHHGAYQPNEF-IFGSVFSACSNF-----ARILFNEID---SPDLASWNALIAGVAS 276 (579)
Q Consensus 207 -~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~~l~~~~~~-----~~~~~~~~~---~~~~~~~~~li~~~~~ 276 (579)
.....+.+.|++++|.+.|++..+.. |+.. .+..+-..+... +...+++.. +.+...+..+...+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~---P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD---NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 11223445555555555555555442 2111 111111111000 222222221 334445555555554
Q ss_pred CCChHHHHHHHHHHHhCCCC--------CChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 277 HSNANEAMSLFSEMRDRELL--------PDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 277 ~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
.++.++|..+++.+...... .....+..+...+...|++++|.+.+++..+... .++.++..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 35677777777655432100 0012234455566778999999999999888753 35667778888899999
Q ss_pred ChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh---------HHHHHHHHHhccCCh
Q 043608 349 VLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI---------TFNDVMGACAKMASL 417 (579)
Q Consensus 349 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~~~~ 417 (579)
++++|...++++ ...| +...+..+...+...++.++|...++.+......++.. .+......+...|+.
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999886 2223 44444444555667888999998888764332222221 123445677888999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 418 EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
++|..+++. .+.++..+..+...+.+.|+.++|...|+++.+ | +...+..++..|...|++++|++.++...
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999998872 345666778889999999999999999998874 3 56788889999999999999999999887
Q ss_pred hCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC----CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 495 SLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP----TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 495 ~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+. .|+ ...+..+..++...|++++|.++++++.....-.| +...+..+.+.+...|+.++|.+.+++.
T Consensus 665 ~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 665 AT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred cc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 64 444 45677788888999999999999999986411111 1235666788899999999999999887
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.1e-22 Score=218.92 Aligned_cols=519 Identities=13% Similarity=0.031 Sum_probs=324.9
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHH------------
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQ------------ 73 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 73 (579)
++.+...++.+.|.+.++++... .+.++..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCc
Confidence 45566778889999999988874 45566777888888888999999999999988776 3343332
Q ss_pred ----HHHHHHHHccCChhhHHHhhcCCCCCCeeehh----HHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHH
Q 043608 74 ----NHILNMYGKCGSLEDARMGFDKMPQRNVVSWT----AMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKA 145 (579)
Q Consensus 74 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 145 (579)
..+...+.+.|++++|++.|+...+.++.... .........|++++|++.|+++.+.. +-+...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 23344677889999999988887743222111 11111224588899999999988863 3345567777778
Q ss_pred hcCCCcchhHHHHHHHHHHhccCC----------------C---hhHHH-------------------------------
Q 043608 146 CSGLGSVCLGRQLHAHVIKSEHGS----------------H---LIAQN------------------------------- 175 (579)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~----------------~---~~~~~------------------------------- 175 (579)
+...|+.++|++.++++.+..... + ...+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 888899998988888875432100 0 00011
Q ss_pred ---HHHHHHhcCCCHHHHHHHhcccCC--C-cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 043608 176 ---ALIAMYTKFDRILDARNVFSGIAR--K-DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACS 249 (579)
Q Consensus 176 ---~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~ 249 (579)
.....+...|++++|+..|++..+ | +...+..+...+.+.|++++|...|++..+... +
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p---~------------ 335 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP---H------------ 335 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C------------
Confidence 112233444555555555554432 1 344555555555555555555555555544321 0
Q ss_pred HHHHHHhhcCCCCChhhHH------------HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhh
Q 043608 250 NFARILFNEIDSPDLASWN------------ALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQ 317 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 317 (579)
.++...|. .....+.+.|++++|...|++..... +.+...+..+...+...|++++
T Consensus 336 -----------~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 336 -----------SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred -----------ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 11111121 12345677888888888888888752 2344556667778888888888
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC-C----------ChhhHHHHHHHHHhcCCHHHHH
Q 043608 318 GMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN-A----------DSVSWNSIIAACLQHNQAEELF 386 (579)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----------~~~~~~~l~~~~~~~~~~~~a~ 386 (579)
|.+.|+.+.+... .+...+..+...+. .++.++|...++.+... + ....+..+...+...|++++|.
T Consensus 404 A~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 404 AERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 9888888887642 23444444444442 23455555555443211 0 0112333444455566666666
Q ss_pred HHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH--------------------------
Q 043608 387 RLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMN-------------------------- 440 (579)
Q Consensus 387 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------- 440 (579)
+.|++..+.. +-+...+..+...+...|++++|...++++.+.... ++..+.
T Consensus 482 ~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 482 ELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence 6666665542 223444555556666666666666666665543221 122111
Q ss_pred ------------------HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh
Q 043608 441 ------------------GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502 (579)
Q Consensus 441 ------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 502 (579)
.+...+...|+.++|..+++.- .++...+..+...+.+.|++++|+..|++..+.. +.+.
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~ 637 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNA 637 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 2234455566666666666622 2344556678888899999999999999999863 3356
Q ss_pred hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+..++..+...|++++|...++...+ ..| +......+..++...|++++|.++++++
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7888999999999999999999998774 344 3456677888899999999999999998
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.1e-22 Score=208.81 Aligned_cols=541 Identities=11% Similarity=-0.023 Sum_probs=378.9
Q ss_pred hcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHH
Q 043608 11 KQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDAR 90 (579)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 90 (579)
..|++++|+..|+.+.+. .|-+..++..+...+...|++++|...+++..+.. +.|...+..+ ..+ +++++|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHH
Confidence 349999999999999985 45557788899999999999999999999999875 4444444444 222 8999999
Q ss_pred HhhcCCCC--CC-eeehhHHhhhh-----hcCCChhhHHHHHHHHHHCCCCCCcccHHHH-HHHhcCCCcchhHHHHHHH
Q 043608 91 MGFDKMPQ--RN-VVSWTAMIAGC-----SQNYQENDAIKLYIQMLQSGVMPGQFTFGSI-IKACSGLGSVCLGRQLHAH 161 (579)
Q Consensus 91 ~~~~~~~~--~~-~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~ 161 (579)
.+++++.+ |+ ...+..+.... ....++++|.+.++ .......|+..+.... .+.|...|+++.|+.++.+
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999974 43 44455444440 11233466666666 4333233344444444 8899999999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHhc-CCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 162 VIKSEHGSHLIAQNALIAMYTK-FDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
+.+.+. .+......|..+|.. .++ +.+..+++...+.+...+..++..+.+.|+.++|.++++++...-.-.|+..+
T Consensus 208 L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 208 ARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 999874 345556667677887 477 88888877655668889999999999999999999999998776543466666
Q ss_pred HHHHHHHHHHH-----------------------------------HHHHhhcCC-------------------------
Q 043608 241 FGSVFSACSNF-----------------------------------ARILFNEID------------------------- 260 (579)
Q Consensus 241 ~~~~l~~~~~~-----------------------------------~~~~~~~~~------------------------- 260 (579)
+...+...... +..+ ....
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL-LATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 55554432211 1111 1111
Q ss_pred --------CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC-C-CCCChHHHHHHHHHhhcccch---hhHHH-------
Q 043608 261 --------SPDLASWNALIAGVASHSNANEAMSLFSEMRDR-E-LLPDGLTVHSLLCACIGRLTL---YQGMQ------- 320 (579)
Q Consensus 261 --------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~~---~~a~~------- 320 (579)
+.+......+.-...+.|+.++|.++|+..... + -.++......++..+.+.+.. ..+..
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 112222222333445677888888888877652 1 222333444666666655442 22211
Q ss_pred ---------------HHHHHHHc-CC-CC--CchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcC
Q 043608 321 ---------------VHSYIIKM-GF-DS--NVPVCNAILTMYAKCSVLCNALLVFKEL-GKNADSVSWNSIIAACLQHN 380 (579)
Q Consensus 321 ---------------~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 380 (579)
.++..... +. ++ +...+..+..++.. ++.++|...+.+. ...|+......+...+...|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCC
Confidence 12222111 11 23 55677777777776 7888898866654 44566444334445556899
Q ss_pred CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHh
Q 043608 381 QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFN 460 (579)
Q Consensus 381 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 460 (579)
++++|...|+++... +|+...+..+...+...|+.++|...++...+... .+...+..+.......|++++|...++
T Consensus 524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999997664 45555566677788899999999999999887652 233333344444556699999999999
Q ss_pred hCC--CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 043608 461 FME--NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537 (579)
Q Consensus 461 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 537 (579)
+.. .|+...|..+...+.+.|++++|+..+++..+. .| +...+..+..++...|++++|+..+++..+. .+-+
T Consensus 601 ~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~ 676 (987)
T PRK09782 601 RSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDD 676 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 888 488888999999999999999999999999986 45 4567788888999999999999999999863 2335
Q ss_pred cchhHHHHHHHHhcCChhHHHHHHHhh-cCCCCh
Q 043608 538 REHCSCVVDLLARAGCVHEAEDFINQM-ACDADI 570 (579)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 570 (579)
...+..+..++...|++++|...+++. ...|+.
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 667889999999999999999999988 455653
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=3.1e-19 Score=183.56 Aligned_cols=544 Identities=8% Similarity=-0.071 Sum_probs=378.3
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHH--
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNM-- 79 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-- 79 (579)
+..+.+.|.+.|+.++|+..+++.... .|+...|..++..+ +++++|..+++++.+.. +.+...+..+...
T Consensus 81 ~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~ 153 (987)
T PRK09782 81 TLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEV 153 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhh
Confidence 356788999999999999999999874 33334444333333 88999999999999887 6667777777666
Q ss_pred ------HHccCChhhHHHhhcCCCCCC--eeehhHH-hhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcC-C
Q 043608 80 ------YGKCGSLEDARMGFDKMPQRN--VVSWTAM-IAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSG-L 149 (579)
Q Consensus 80 ------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~ 149 (579)
|.+.++..++++ .+...|+ ....... .+.|.+.|+|++|+++++++.+.+ +.+..-...+-.+|.. .
T Consensus 154 ~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 154 GQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred ccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Confidence 777766666666 3333343 4444444 889999999999999999999985 3334445566667766 3
Q ss_pred CcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-----cHh---------------------
Q 043608 150 GSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-----DVT--------------------- 203 (579)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~--------------------- 203 (579)
++ +.+..+++. .+..+..+...+...|...|+.++|.++++++..- ...
T Consensus 231 ~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~ 305 (987)
T PRK09782 231 LD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYT 305 (987)
T ss_pred CH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchh
Confidence 66 777777442 34468888999999999999999999999887531 000
Q ss_pred ---------hHHHHHHHHHhcCChHHHHHH-----------------------------HHHHHhcCCCCC---ChHhHH
Q 043608 204 ---------SWGSMIAAFSKLGYELEALCH-----------------------------FNEMLHHGAYQP---NEFIFG 242 (579)
Q Consensus 204 ---------~~~~l~~~~~~~~~~~~a~~~-----------------------------~~~m~~~~~~~p---~~~~~~ 242 (579)
..-.++..+.+.+.++.+.++ ++.|.+...-.+ +..++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 306 VQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 011124444555555444433 222322200011 223444
Q ss_pred HHHHHHHHHHHHHhhcCCC------CChhhHHHHHHHHHcCCC---hHHHHHH----------------------HHHHH
Q 043608 243 SVFSACSNFARILFNEIDS------PDLASWNALIAGVASHSN---ANEAMSL----------------------FSEMR 291 (579)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~------~~~~~~~~li~~~~~~~~---~~~a~~~----------------------~~~m~ 291 (579)
.+-+.-.+.+.++++...+ .+...-+-++..|.+.+. ..++..+ ++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 4444444556666666543 122234466677776655 3333333 11111
Q ss_pred hC-CCCC---ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCCh
Q 043608 292 DR-ELLP---DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNADS 366 (579)
Q Consensus 292 ~~-g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~ 366 (579)
.. +..| +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+.+ ..+|+.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence 11 1223 34455555555555 78888999888877664 45444444455567899999999999987 334555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIY 446 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (579)
..+..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++|...+++..+.. |+...+..+..++
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l 619 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIY 619 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 567777888899999999999999998864 2233333334445556799999999999998765 4678899999999
Q ss_pred HHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHH
Q 043608 447 IKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 522 (579)
.+.|+.++|...+++... | +...++.+...+...|++++|+..+++..+. .| +...+..+..++...|++++|+
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999874 4 4567778888999999999999999999985 45 5668889999999999999999
Q ss_pred HHHHHHHHhhCCCCCc-chhHHHHHHHHhcCChhHHHHHHHhh-cCCCChh
Q 043608 523 HLYRIMENEYGIIPTR-EHCSCVVDLLARAGCVHEAEDFINQM-ACDADIV 571 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 571 (579)
..+++..+. .|+. .+.........+..+++.|.+-+++- .+.|+..
T Consensus 698 ~~l~~Al~l---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 698 HYARLVIDD---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHhc---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999853 5654 56667788888888899999987776 5555544
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.1e-19 Score=164.40 Aligned_cols=461 Identities=13% Similarity=0.079 Sum_probs=296.4
Q ss_pred hhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCe---eehhHHhhhhhcCCChhhHHHHHHHHHH
Q 043608 53 LGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNV---VSWTAMIAGCSQNYQENDAIKLYIQMLQ 129 (579)
Q Consensus 53 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (579)
.+-.++.+..... ........+.+..-+.|++.+|++.-..+-+.|. ...-.+-..+.+..+.+....--....+
T Consensus 33 ~s~~v~qq~~~t~--~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r 110 (966)
T KOG4626|consen 33 GSSSVLQQFNKTH--EGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR 110 (966)
T ss_pred cchHHHHHhccCC--ccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh
Confidence 3444455444332 1223355667777788999999887766654222 2222223345555666655444333333
Q ss_pred CCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHh---hHH
Q 043608 130 SGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVT---SWG 206 (579)
Q Consensus 130 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~ 206 (579)
. .+.-..+|..+.+.+-..|+++.|+.+++.+++.. +.....|..+..++...|+.+.|.+.|.+..+-|+. ..+
T Consensus 111 ~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s 188 (966)
T KOG4626|consen 111 K-NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS 188 (966)
T ss_pred c-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence 2 23346788888888888888888888888888764 234667777777888888888888777766554332 222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 043608 207 SMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSL 286 (579)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 286 (579)
.+...+-..|+.++|...+-+..+.. +.=...|..|...+..+|+...|+..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~q----------------------------p~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQ----------------------------PCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhC----------------------------CceeeeehhcchHHhhcchHHHHHHH
Confidence 33344445677777777776666552 22346677788888888888888888
Q ss_pred HHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC
Q 043608 287 FSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA 364 (579)
Q Consensus 287 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~ 364 (579)
|++.... .|+ ...|-.+-..+...+.++.|...|....... +....++..+...|-..|.++.|+..+++. ...|
T Consensus 241 y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 241 YEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP 317 (966)
T ss_pred HHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC
Confidence 8777653 444 3456666666667777777777776665543 224455666666677777777777777765 3334
Q ss_pred C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 043608 365 D-SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGL 442 (579)
Q Consensus 365 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 442 (579)
+ ...|+.|..++-..|+..+|...|++.... .|+ ..+.+.+...+...|.++.|..++....+.... -...++.|
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNL 394 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNL 394 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhH
Confidence 3 456777777777777777777777777665 333 456667777777777777777777776654322 23456667
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCch
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLV 518 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 518 (579)
...|-..|++++|...+++... |+ ...|+.+...|...|+.+.|.+.+.+.+.. .|. ...++.|...|-..|+.
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCc
Confidence 7777777777777777777663 43 356777777777777777777777777663 454 44677777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCCc-chhHHHHHHHHhcCChhH
Q 043608 519 EEGLHLYRIMENEYGIIPTR-EHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 519 ~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 556 (579)
.+|+.-+++.. .+.||. +.|..++.++.-..++.+
T Consensus 473 ~~AI~sY~~aL---klkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 473 PEAIQSYRTAL---KLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHH---ccCCCCchhhhHHHHHHHHHhcccc
Confidence 77777777776 346653 356666666544444443
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.4e-19 Score=172.58 Aligned_cols=298 Identities=15% Similarity=0.085 Sum_probs=233.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 043608 209 IAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFS 288 (579)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (579)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~----------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD----------------------------PETVELHLALGNLFRRRGEVDRAIRIHQ 93 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC----------------------------cccHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 445667899999999999999874 4566788889999999999999999999
Q ss_pred HHHhCCCCCC---hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCC-CC
Q 043608 289 EMRDRELLPD---GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGK-NA 364 (579)
Q Consensus 289 ~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~ 364 (579)
.+...+..++ ...+..+...+...|+++.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.. .|
T Consensus 94 ~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 94 NLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 9987543222 2456777788888999999999999988763 34667888888899999999999999888721 11
Q ss_pred C------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhH
Q 043608 365 D------SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFV 438 (579)
Q Consensus 365 ~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 438 (579)
+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 1 1235566777888899999999999988753 33455677777888889999999999998887654444566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc--
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFME--NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH-- 514 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 514 (579)
++.+..+|.+.|++++|...++++. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhcc
Confidence 7888888999999999999888876 377666778888888999999999999888875 6888888877776654
Q ss_pred -cCchHHHHHHHHHHHHhhCCCCCcc
Q 043608 515 -VGLVEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 515 -~g~~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
.|+.+++..+++++.+. ++.|++.
T Consensus 330 ~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHH-HHhCCCC
Confidence 45888899999988877 7777776
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=3.8e-19 Score=162.80 Aligned_cols=434 Identities=13% Similarity=0.113 Sum_probs=345.3
Q ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcC
Q 043608 38 YAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQN 114 (579)
Q Consensus 38 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 114 (579)
...|.....+.|++.+|++....+-..+ +.+....-.+-..+....+++....--....+ ....+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4456666778899999988887776554 33334444444556666666654433222222 3456899999999999
Q ss_pred CChhhHHHHHHHHHHCCCCC-CcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChh-HHHHHHHHHhcCCCHHHHHH
Q 043608 115 YQENDAIKLYIQMLQSGVMP-GQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLI-AQNALIAMYTKFDRILDARN 192 (579)
Q Consensus 115 ~~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 192 (579)
|+++.|+..|+.+++. +| ....|..+..++...|+.+.|.+.+.+.++.+ |+.. ..+.+...+...|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999986 44 46789999999999999999999999988864 4433 34456666777899999988
Q ss_pred HhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 043608 193 VFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNA 269 (579)
Q Consensus 193 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
.+.+..+. =..+|+.|...+-..|+...|++.|++..+.. +.=..+|-.
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld----------------------------P~f~dAYiN 257 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD----------------------------PNFLDAYIN 257 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC----------------------------CcchHHHhh
Confidence 88765543 24689999999999999999999999988763 233578889
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPDG-LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
|...|...+.++.|...|...... .|+. ..+..+...|...|.++.|+..|+..++.. +.-+..|+.+..++-..|
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G 334 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKG 334 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhcc
Confidence 999999999999999999877654 6654 556677777889999999999999999875 335678999999999999
Q ss_pred ChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHH
Q 043608 349 VLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 349 ~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
++.+|...++.. -.+....+.+.|...+...|.+++|..+|....+- .|. ...++.+...|-..|++++|...++
T Consensus 335 ~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 999999999886 22335778999999999999999999999988774 455 4578889999999999999999999
Q ss_pred HHHHcCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 426 YITKTGLAFD-VFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 426 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+..+. +|+ ...++.+...|-..|+.+.|.+.+.+...-+ ....+.|...|...|++.+|+.-+++..+ ++||
T Consensus 413 ealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 413 EALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 98874 454 5678899999999999999999999988643 35678899999999999999999999998 5777
Q ss_pred -hhHHHHHHHHhh
Q 043608 502 -LVTLVGVLTACS 513 (579)
Q Consensus 502 -~~~~~~l~~~~~ 513 (579)
+..|..++.++-
T Consensus 489 fpdA~cNllh~lq 501 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQ 501 (966)
T ss_pred CchhhhHHHHHHH
Confidence 346666665543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.6e-19 Score=173.88 Aligned_cols=300 Identities=11% Similarity=0.039 Sum_probs=192.6
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCC---hhHHHHHHHHHhcCCCH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSH---LIAQNALIAMYTKFDRI 187 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 187 (579)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555542 22333455555555555666666665555554321111 23455666677777777
Q ss_pred HHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 188 LDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 188 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
+.|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+.+. .+.. ....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----------------------~~~~ 180 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLR----------------------VEIA 180 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-Ccch----------------------HHHH
Confidence 777777776654 3456777777888888888888888888776542 0000 0011
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMY 344 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (579)
..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......++..++.+|
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 234556667777888888888888877642 2234455566677777888888888888777664333345567777788
Q ss_pred HhcCChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc---cCChHHH
Q 043608 345 AKCSVLCNALLVFKEL-GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK---MASLEMV 420 (579)
Q Consensus 345 ~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a 420 (579)
...|++++|...++.+ ...|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhH
Confidence 8888888888887775 33456566677777788888888888888877765 5777777777766553 4477788
Q ss_pred HHHHHHHHHcCCCCchh
Q 043608 421 TQLHCYITKTGLAFDVF 437 (579)
Q Consensus 421 ~~~~~~~~~~~~~~~~~ 437 (579)
..+++.+.+.++.|++.
T Consensus 338 ~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 88888887766666654
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.2e-18 Score=163.55 Aligned_cols=541 Identities=12% Similarity=0.078 Sum_probs=354.7
Q ss_pred hhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhc
Q 043608 15 YNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFD 94 (579)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 94 (579)
.+.|...|..+.+. .++|...+..-.+.....+++..|..+|...+.......+...-.+-.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~--sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 57888888888774 5555555444444455678888888888886654422222222334466678888888888888
Q ss_pred CCCCCCeeehhHHhhh------hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccC
Q 043608 95 KMPQRNVVSWTAMIAG------CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHG 168 (579)
Q Consensus 95 ~~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (579)
+..+-|+..-++++.. +-....+..++.++...-..+ .-++...+.|.+.+...|+++.+..+...+......
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8776555444443332 112234455666666655442 345666777777777888888888887777665421
Q ss_pred --CChhHHHHHHHHHhcCCCHHHHHHHhcccCCC---c-HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHH
Q 043608 169 --SHLIAQNALIAMYTKFDRILDARNVFSGIARK---D-VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG 242 (579)
Q Consensus 169 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 242 (579)
.-...|--+.++|-..|+++.|...|.+..+. + +..+--+.+.+...|+.+.+...|+...+. .|+..-..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~---~p~~~etm 379 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ---LPNNYETM 379 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh---CcchHHHH
Confidence 12334566777888888888888877665543 2 334556677778888888888888887776 33333222
Q ss_pred HHHHH---HH-------HHHHHHhhcCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHH----HhCCCCCChHHHHHH
Q 043608 243 SVFSA---CS-------NFARILFNEID---SPDLASWNALIAGVASHSNANEAMSLFSEM----RDRELLPDGLTVHSL 305 (579)
Q Consensus 243 ~~l~~---~~-------~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~l 305 (579)
.++.. .. ..+..+..... +.|...|-.+...+....-+ .++..|... ...+-.+.....+.+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 22222 11 11333333333 34556666666666554443 336666543 455556778888888
Q ss_pred HHHhhcccchhhHHHHHHHHHHc---CCCCCc------hhHHHHHHHHHhcCChHHHHHHHHHc-CCCCChh-hHHHHHH
Q 043608 306 LCACIGRLTLYQGMQVHSYIIKM---GFDSNV------PVCNAILTMYAKCSVLCNALLVFKEL-GKNADSV-SWNSIIA 374 (579)
Q Consensus 306 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~ 374 (579)
.......|++..|...+...... ...++. .+--.+...+-..++.+.|.+.|..+ ...|+-+ .|-.++.
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 88888899999999888887665 122222 12223445556677889999999887 3444433 3444442
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHH-----
Q 043608 375 ACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG-LAFDVFVMNGLMDIYIK----- 448 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----- 448 (579)
.....+...+|..+++...... ..++..+..+...+.+...+..|..-|....+.- ..+|+.+.-+|...|..
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 2333567888888888876642 3333344445556667777777777666665332 23566666667665542
Q ss_pred -------cCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCch
Q 043608 449 -------CGSLGSARKLFNFMENP---DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLV 518 (579)
Q Consensus 449 -------~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 518 (579)
.+..+.|+++|.++.+. |...-|-+.-.++..|++.+|..+|.+..+.. .-+..+|..+.++|..+|++
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHH
Confidence 24567888888888753 44555667777889999999999999999874 33556888999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 519 EEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 519 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..|++.|+...+.+.-.-++.+...|.+++.++|++.+|.+.+...
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999988776667888899999999999999999988766
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=2e-17 Score=144.98 Aligned_cols=342 Identities=18% Similarity=0.227 Sum_probs=218.1
Q ss_pred hhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhh--cchhhh-hhhhHHHHHHHhCCCCChhHHHHHHHHHHccCCh
Q 043608 10 CKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACS--SLRSLQ-LGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSL 86 (579)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 86 (579)
..+|..+++--+|+.|.+. +.+.++..-..|++.-+ .+.++. .-++.|-.|.+.| +.+..+| +.|++
T Consensus 126 IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAV 195 (625)
T ss_pred HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccH
Confidence 4456666666777777666 66666655554444322 222222 2223344444444 2222222 34444
Q ss_pred hhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 87 EDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 87 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
.+ ++-+.......+|..+|.++|+....+.|.++|++......+.+..+||.+|.+-. +....+++.+|....
T Consensus 196 Ad---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 196 AD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQK 268 (625)
T ss_pred HH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhh
Confidence 44 33333444667899999999999999999999999988878888999999988644 333378889999988
Q ss_pred cCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 043608 167 HGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFS 246 (579)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~ 246 (579)
..||..++|+++.+..+.|+++.|.. .|++++.+|++-|+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGV------------- 308 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGV------------- 308 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCC-------------
Confidence 89999998888888888888877764 47888999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHH-HHHHHHHHH----hCCCCC----ChHHHHHHHHHhhcccchhh
Q 043608 247 ACSNFARILFNEIDSPDLASWNALIAGVASHSNANE-AMSLFSEMR----DRELLP----DGLTVHSLLCACIGRLTLYQ 317 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~----~~g~~p----~~~~~~~ll~~~~~~~~~~~ 317 (579)
+|+..+|..+|..+++.++..+ +..++.++. .+..+| |..-|...+..|.+..+.+.
T Consensus 309 --------------ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~L 374 (625)
T KOG4422|consen 309 --------------EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLEL 374 (625)
T ss_pred --------------CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999888754 334444433 233333 33445566666666666666
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043608 318 GMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ 396 (579)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 396 (579)
|.++...+....-. ..++.. ....-|..+....|+....+....+|+.|.-.-
T Consensus 375 A~~v~~ll~tg~N~--------------------------~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 375 AYQVHGLLKTGDNW--------------------------KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred HHHHHHHHHcCCch--------------------------hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 66665544332100 000000 022234455556666666677777777776666
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 043608 397 IKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK 448 (579)
Q Consensus 397 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (579)
+-|+..+...++++..-.+.++-..++|..+...|...+......++..+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 6677777777777777777777777777777766655544444444444443
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.6e-17 Score=155.28 Aligned_cols=535 Identities=13% Similarity=0.067 Sum_probs=352.2
Q ss_pred CChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHh
Q 043608 13 NLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMG 92 (579)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 92 (579)
..+..|.-.|+.+.......+...++...........+++.|.+.|..+++.. +++.-.+---.......|++-.|+.+
T Consensus 108 e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~y 186 (1018)
T KOG2002|consen 108 ELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKY 186 (1018)
T ss_pred HHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHH
Confidence 34566777777666642223332233332222222233689999999999876 55554444334444467899999999
Q ss_pred hcCCCC------CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCC-cccHHHHHHHh---cCCCcchhHHHHHHHH
Q 043608 93 FDKMPQ------RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPG-QFTFGSIIKAC---SGLGSVCLGRQLHAHV 162 (579)
Q Consensus 93 ~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~---~~~~~~~~a~~~~~~~ 162 (579)
|..... ||+.. .+...+.+.|+.+.|+..|.+..+. .|+ +.++..|.-.- -....+..+.+++...
T Consensus 187 yk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a 262 (1018)
T KOG2002|consen 187 YKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA 262 (1018)
T ss_pred HHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 988542 33321 2234566889999999999999886 342 23333322222 2333455667776666
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCc------HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKD------VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQP 236 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p 236 (579)
.... +.++.+.+.|...|...|+++.+..+...+...+ ..+|-.+.++|-..|++++|...|.+..+. .|
T Consensus 263 y~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~ 338 (1018)
T KOG2002|consen 263 YKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DN 338 (1018)
T ss_pred Hhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CC
Confidence 5543 4567888999999999999999999887766542 346888999999999999999999888766 34
Q ss_pred ChHhH--HHHHHHHHHH-----HHHHhhcCC---CCChhhHHHHHHHHHcCC----ChHHHHHHHHHHHhCCCCCChHHH
Q 043608 237 NEFIF--GSVFSACSNF-----ARILFNEID---SPDLASWNALIAGVASHS----NANEAMSLFSEMRDRELLPDGLTV 302 (579)
Q Consensus 237 ~~~~~--~~~l~~~~~~-----~~~~~~~~~---~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~ 302 (579)
+..++ ..+-+..... +...|+.+. +.+..+...|...|...+ ..+.|..++.+..+.- +.|...|
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 43222 2222222211 333333332 334455555556665554 4456666666655442 3344455
Q ss_pred HHHHHHhhcccchhhHHHHHHHH----HHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcC-C-----CCCh------
Q 043608 303 HSLLCACIGRLTLYQGMQVHSYI----IKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELG-K-----NADS------ 366 (579)
Q Consensus 303 ~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~-----~~~~------ 366 (579)
-.+-..+-. ++...++.++..+ ...+..+.+...|.+...+...|+++.|...|.... . .++.
T Consensus 418 l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 444444443 3444446555543 455666888899999999999999999999987751 1 1222
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
.+--.+....-..++++.|.+.|..+... .|+-. .|..+....-..+...+|...++.....+ ..++..+..+...
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNL 573 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHH
Confidence 12223445555677899999999998886 55543 34444433334567888888888877543 3466667777778
Q ss_pred HHHcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHh------------cCCcHHHHHHHHHHHhCCCCCChhHHHHH
Q 043608 446 YIKCGSLGSARKLFNFME-----NPDVVSWSSLILGYAQ------------FGCGDEALKLFTRMRSLGVSPNLVTLVGV 508 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 508 (579)
+.+..++.-|..-|..+. .+|+.+.-+|.+.|.+ .+..++|+++|.+..... +-|...-+.+
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGI 652 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGI 652 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccch
Confidence 888888888877555544 2566666666665542 245678999999988864 4477788888
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 509 LTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.-.++..|++.+|..+|.+..+. ......+|..+.++|..+|++-.|+++|+..
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999986 2345567889999999999999999999887
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=5e-17 Score=164.60 Aligned_cols=414 Identities=12% Similarity=0.009 Sum_probs=186.2
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK 183 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (579)
+......+.+.|++++|+..|++.+.. .|+...|..+..++...|++++|++.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334555677788888888888887764 5677777777778888888888888888877754 2345566777777888
Q ss_pred CCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCChHhHHHHHHHHHHH-HHHHhhc
Q 043608 184 FDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGA-YQPNEFIFGSVFSACSNF-ARILFNE 258 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~~l~~~~~~-~~~~~~~ 258 (579)
.|++++|+..|...... +......++..+.. ..+........+... ..|........+...... ...-+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 88888877666443211 11111111111111 112222222222210 001111000000000000 0000000
Q ss_pred CCC--CC-hhhHHHHHHH---HHcCCChHHHHHHHHHHHhCC-CCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCC
Q 043608 259 IDS--PD-LASWNALIAG---VASHSNANEAMSLFSEMRDRE-LLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGF 330 (579)
Q Consensus 259 ~~~--~~-~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 330 (579)
... +. ...+..+... ....+++++|.+.|+...+.+ ..|+ ...+..+...+...|++++|...++..++..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 000 00 0000000000 011244555555555555433 1222 2233333344445555555555555555442
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
+.....+..+...+...|++++|...|+.. ... .+...|..+...+...|++++|...|++..+.. +.+...+..+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la 440 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG 440 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence 112334444445555555555555555443 111 133444555555555555555555555554432 22233344444
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh-hh-------HHHHHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDV-VS-------WSSLILGYA 478 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~-------~~~l~~~~~ 478 (579)
..+.+.|++++|...++...+.. +.++..++.+..++...|++++|...|+...+ |+. .. ++.....+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 44555555555555555544432 22344445555555555555555555554432 110 00 011111122
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
..|++++|.+++++..+. .|+ ...+..+...+...|++++|.+.|++..
T Consensus 520 ~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 520 WKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 235555555555554443 222 2244445555555555555555555544
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=4e-17 Score=164.58 Aligned_cols=318 Identities=10% Similarity=-0.080 Sum_probs=162.4
Q ss_pred HHHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH
Q 043608 177 LIAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFAR 253 (579)
Q Consensus 177 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~ 253 (579)
++..+...|++++|..+++..... +......++.+....|++++|.+.++++....
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------------------- 106 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--------------------- 106 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC---------------------
Confidence 344455556666666665555332 33444444555555666666666666655543
Q ss_pred HHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCC
Q 043608 254 ILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS 332 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (579)
+.+...+..+...+...|++++|...+++.... .|+ ...+..+...+...|++++|...++.+......+
T Consensus 107 -------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 107 -------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 334445555555666666666666666665543 232 3344445555556666666666665554443222
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-CCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-GKN--ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMG 409 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 409 (579)
...+..+ ..+...|++++|...++.+ ... ++...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 178 -~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~ 254 (656)
T PRK15174 178 -GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGL 254 (656)
T ss_pred -HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 2222222 2245556666666655554 111 122223333445555666666666666655542 223444445555
Q ss_pred HHhccCChHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCC
Q 043608 410 ACAKMASLEM----VTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGC 482 (579)
Q Consensus 410 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~ 482 (579)
.+...|++++ |...++...+... .+...+..+...+.+.|++++|...+++..+ |+ ...+..+..++.+.|+
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 5555555553 5555555554432 2445555555566666666666666555542 22 3344445555556666
Q ss_pred cHHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLV-TLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+++|...++++.+. .|+.. .+..+..++...|+.++|...|++..+
T Consensus 334 ~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 334 YTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666655553 23322 222234445556666666666665554
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.7e-17 Score=167.13 Aligned_cols=218 Identities=9% Similarity=-0.053 Sum_probs=91.0
Q ss_pred hHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCCh
Q 043608 7 SSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSL 86 (579)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 86 (579)
..+.++|++++|+.+++..... .+-++..+..++.+....|+++.|.+.++.+.+.. +.+...+..+...+...|++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 3444445555555554444442 22223333333344444455555555555544443 33344444444444444555
Q ss_pred hhHHHhhcCCCC--C-CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCc-ccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 87 EDARMGFDKMPQ--R-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQ-FTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 87 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
++|...+++..+ | +...+..+...+...|++++|...++.+.... |+. ..+.. +..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIAT-CLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHH-HHHHHHcCCHHHHHHHHHHH
Confidence 555544444432 2 22334444444444455555555444443321 111 11111 11234444444454444444
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHH----HHHHHHHHHh
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELE----ALCHFNEMLH 230 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~ 230 (579)
.+....++......+...+...|++++|...+++..+. +...+..+...+.+.|++++ |...|++..+
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 43322222222233334444444444444444443321 23344444444444444443 3444444443
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=4.6e-17 Score=164.86 Aligned_cols=420 Identities=10% Similarity=-0.036 Sum_probs=280.4
Q ss_pred HHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--C-CeeehhHHhhhhhcCC
Q 043608 39 AGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--R-NVVSWTAMIAGCSQNY 115 (579)
Q Consensus 39 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 115 (579)
......+.+.|++++|...|++.++. .|++..|..+..+|.+.|++++|++.++...+ | +...|..+..++...|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 34455567778888888888887764 45667777778888888888888888777664 2 3446777777788888
Q ss_pred ChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhc
Q 043608 116 QENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFS 195 (579)
Q Consensus 116 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 195 (579)
++++|+.-|......+- .+......++..+.. ..+........+.. +.+...+..+.. +......+....-+.
T Consensus 209 ~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 209 KYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 88888877766554321 111111111111111 11122222222221 112222222211 111111111111111
Q ss_pred ccCCCcH---hhHHHHHHH---HHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 043608 196 GIARKDV---TSWGSMIAA---FSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNA 269 (579)
Q Consensus 196 ~~~~~~~---~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
...+.+. ..+..+... ....+++++|.+.|+...+.+... +.....|+.
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~-------------------------~~~a~a~~~ 336 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG-------------------------EKEAIALNL 336 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC-------------------------hhhHHHHHH
Confidence 1111111 111111111 123468899999999988765200 334566788
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 888899999999999999998875 455 4567777788889999999999999998875 446788899999999999
Q ss_pred ChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 349 VLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 349 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
++++|...|+.. ...| +...+..+...+.+.|++++|+..|++..... +.+...+..+...+...|++++|...++.
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999986 3333 56678888889999999999999999988752 44567888889999999999999999999
Q ss_pred HHHcCCCCchh------HHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 427 ITKTGLAFDVF------VMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 427 ~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
..+.....+.. .++.....+...|++++|.+++++..+ | +...+..+...+.+.|++++|++.|++..+.
T Consensus 493 Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88754332111 122223344557999999999998753 3 3456888999999999999999999998875
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.1e-16 Score=164.94 Aligned_cols=390 Identities=8% Similarity=-0.010 Sum_probs=224.9
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK 183 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (579)
-.-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.+++++..+.. +.+...+..+..++..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445566677899999999998887622 3344457888888888999999999998887764 3345566677788888
Q ss_pred CCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCC
Q 043608 184 FDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEID 260 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 260 (579)
.|++++|+..+++..+. +.. +..+...+...|+.++|+..++++.+..
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---------------------------- 146 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---------------------------- 146 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------
Confidence 88998888888876542 455 7778888888888888988888888774
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH------HHHHHHHHhh-----cccch---hhHHHHHHHHH
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL------TVHSLLCACI-----GRLTL---YQGMQVHSYII 326 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~-----~~~~~---~~a~~~~~~~~ 326 (579)
+.+...+..+...+...+..++|+..++.... .|+.. .....+.... ..+++ ++|.+.++.+.
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 34555666677777788888888888876553 33310 1111112111 11223 45666666665
Q ss_pred Hc-CCCCCch-hHH----HHHHHHHhcCChHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043608 327 KM-GFDSNVP-VCN----AILTMYAKCSVLCNALLVFKELGKN----ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ 396 (579)
Q Consensus 327 ~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 396 (579)
+. ...|+.. .+. ..+.++...|++++|+..|+.+... |+. .-..+...+...|++++|...|+++....
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 43 1122211 111 1122334556666666666665222 111 11123455666666666666666655432
Q ss_pred CCC---cHhHHHHHHHHHhccCChHHHHHHHHHHHHcCC-----------CCc---hhHHHHHHHHHHHcCCHHHHHHHH
Q 043608 397 IKP---DHITFNDVMGACAKMASLEMVTQLHCYITKTGL-----------AFD---VFVMNGLMDIYIKCGSLGSARKLF 459 (579)
Q Consensus 397 ~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 459 (579)
... .......+..++...|++++|.+.++.+.+... .|+ ...+..+...+...|+.++|.+++
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 110 112334444455666666666666666654321 111 112333444555555555555555
Q ss_pred hhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 460 NFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 460 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+++.. .+...+..+...+...|++++|++.+++..+. .|+ ...+...+..+...|++++|..+++++.+
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55442 22344455555555555555555555555553 233 33444444455555555555555555554
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.5e-16 Score=162.46 Aligned_cols=413 Identities=7% Similarity=-0.047 Sum_probs=233.6
Q ss_pred CCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCC---CCCeeehhHHh
Q 043608 32 RIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMP---QRNVVSWTAMI 108 (579)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 108 (579)
+.++.-..-.+......|+.++|++++....... +.+...+..+...+.+.|++++|.+.+++.. ..+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4444444555666677778888888887776533 4455567777777778888888888887754 23445566667
Q ss_pred hhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHH
Q 043608 109 AGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRIL 188 (579)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 188 (579)
..+...|++++|...+++..+.. +.+.. +..+...+...|+.++|...++++.+..+ .+...+..+..++...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChH
Confidence 77777888888888888887752 33344 66677777788888888888888877653 24445555677777778888
Q ss_pred HHHHHhcccCCC-c------HhhHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH
Q 043608 189 DARNVFSGIARK-D------VTSWGSMIAAFS-----KLGYE---LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFAR 253 (579)
Q Consensus 189 ~a~~~~~~~~~~-~------~~~~~~l~~~~~-----~~~~~---~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~ 253 (579)
.|++.++..... + ......++.... ..+++ ++|++.++.+.+.-...|+.
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~--------------- 232 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA--------------- 232 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc---------------
Confidence 888888776651 1 011222222221 22233 67888888887552101111
Q ss_pred HHhhcCCCCChh-hHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCC
Q 043608 254 ILFNEIDSPDLA-SWNALIAGVASHSNANEAMSLFSEMRDRELL-PDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD 331 (579)
Q Consensus 254 ~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (579)
.|... .....+..+...|+.++|...|+.+.+.+.. |+. ....+..++...|++++|...++.+.+....
T Consensus 233 -------~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 233 -------TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred -------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 01000 1111133456778999999999999877532 332 1222455677788888888888877654321
Q ss_pred C---CchhHHHHHHHHHhcCChHHHHHHHHHcCCC-CChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH---hH
Q 043608 332 S---NVPVCNAILTMYAKCSVLCNALLVFKELGKN-ADSV-SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH---IT 403 (579)
Q Consensus 332 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~ 403 (579)
. .......+..++...|++++|.+.++.+... |... .+. ...-.|+. ..
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~-----------------------~~~~~p~~~~~~a 361 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG-----------------------SPTSIPNDDWLQG 361 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC-----------------------CCCCCCCchHHHH
Confidence 1 1223444455566666666666666655221 1100 000 00001221 12
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhc
Q 043608 404 FNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQF 480 (579)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~ 480 (579)
+......+...|+.++|.+.++++.... +.+...+..+...+...|++++|++.+++... |+ ...+..+...+.+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 2333444445555555555555554432 22344555555555555555555555555542 33 33334444455555
Q ss_pred CCcHHHHHHHHHHHh
Q 043608 481 GCGDEALKLFTRMRS 495 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~ 495 (579)
|++++|+.+++++.+
T Consensus 441 ~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 441 QEWRQMDVLTDDVVA 455 (765)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666655
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=8.6e-15 Score=148.03 Aligned_cols=201 Identities=11% Similarity=0.028 Sum_probs=137.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCcHhHHHHHHHH
Q 043608 339 AILTMYAKCSVLCNALLVFKELGKN---ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ-----IKPDHITFNDVMGA 410 (579)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~ 410 (579)
-.+-++...|++.++++.|+.+... ....+-..+..+|...+++++|..+|+++.... ..++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 3455667778888888888887432 234455677788888888888888888875542 12233334667778
Q ss_pred HhccCChHHHHHHHHHHHHcCC-----------CCch---hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHH
Q 043608 411 CAKMASLEMVTQLHCYITKTGL-----------AFDV---FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSL 473 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 473 (579)
+...+++++|..+++.+.+... .|++ ..+..++..+...|++.+|++.++++.. -|......+
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~ 456 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL 456 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8888888888888888876321 1221 2233456667788888888888888773 456677777
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHH
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCV 544 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 544 (579)
...+...|.+.+|.+.++..... .|+ ..+....+.++...|++++|..+.+.+... .|+......|
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~---~Pe~~~~~~l 523 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISR---SPEDIPSQEL 523 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---CCCchhHHHH
Confidence 78888888888888888766654 454 456667777788888888888888888754 4554444333
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=5.4e-15 Score=149.44 Aligned_cols=415 Identities=12% Similarity=0.042 Sum_probs=305.0
Q ss_pred hhhcCCChhhHHHHHHHHHHCCCCCCc--ccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCH
Q 043608 110 GCSQNYQENDAIKLYIQMLQSGVMPGQ--FTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRI 187 (579)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 187 (579)
...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...+++.... -+........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 467899999999999999886 4554 234 8888888889999999999998821 122233334446688899999
Q ss_pred HHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 188 LDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 188 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
++|+++|+++.+. +...+..++..+.+.++.++|++.++++... .|+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----------------------------dp~~ 169 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-----------------------------DPTV 169 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----------------------------Ccch
Confidence 9999999998764 5667778888999999999999999999876 4565
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCch------hH
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVP------VC 337 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 337 (579)
..+..++..+...++..+|++.++++.+. .| +...+..+..+..+.|-...|.++...-... +.+... ..
T Consensus 170 ~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~ 246 (822)
T PRK14574 170 QNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAA 246 (822)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHH
Confidence 56644545554566776799999999987 45 4566678888889999998888777652211 111100 00
Q ss_pred HHHHHHH---H--hcCC---hHHHHHHHHHc----CCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 043608 338 NAILTMY---A--KCSV---LCNALLVFKEL----GKNADSV-----SWNSIIAACLQHNQAEELFRLFSRMLASQIKPD 400 (579)
Q Consensus 338 ~~l~~~~---~--~~~~---~~~a~~~~~~~----~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 400 (579)
...++.- . ...+ .+.|+.-++.+ +..|... ..--.+-++...+++.++.+.|+.|...|.+..
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 1111100 0 1112 33344444443 3333322 122346677889999999999999999987766
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C--------
Q 043608 401 HITFNDVMGACAKMASLEMVTQLHCYITKTG-----LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-------- 465 (579)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-------- 465 (579)
..+-..+..+|...+.+++|..++..+.... ..++......|.-+|...+++++|..+++.+.+ |
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 6788899999999999999999999987543 123444457889999999999999999998874 2
Q ss_pred -----C--h-hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 043608 466 -----D--V-VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537 (579)
Q Consensus 466 -----~--~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 537 (579)
| - ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++.... +.|+
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~ 482 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES---LAPR 482 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCc
Confidence 1 1 123445677889999999999999998763 44788899999999999999999999977764 3554
Q ss_pred -cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 538 -REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 538 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+....+.++...|++++|..+.+++
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456677888899999999999988777
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.9e-14 Score=124.66 Aligned_cols=418 Identities=13% Similarity=0.117 Sum_probs=286.8
Q ss_pred eeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHh--cCCCcchh-HHHHHHHHHHhccCCChhHHHHH
Q 043608 101 VVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKAC--SGLGSVCL-GRQLHAHVIKSEHGSHLIAQNAL 177 (579)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~--~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l 177 (579)
+++-|.|+. ...+|....+.-+|+.|++.|++.+...-..|++.- ....++-- -++.|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 455666665 445789999999999999999988887776666643 23333321 2233334444332 122222
Q ss_pred HHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhh
Q 043608 178 IAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFN 257 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 257 (579)
+.|...+ ++-+...+...+|..||.++|+-...+.|.+++++......
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~------------------------ 238 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG------------------------ 238 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh------------------------
Confidence 4454433 55555556778999999999999999999999999988766
Q ss_pred cCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhh----HHHHHHHHHHcCCCCC
Q 043608 258 EIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQ----GMQVHSYIIKMGFDSN 333 (579)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~ 333 (579)
+.+..+||.+|.+-.-. .-.+++.+|....+.||..||+.++.+..+.|+++. +.+++.+|.+.|+.|+
T Consensus 239 ---kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 239 ---KVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPS 311 (625)
T ss_pred ---eeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcc
Confidence 56677777777554322 226788889888899999999999999988887654 4578888889999999
Q ss_pred chhHHHHHHHHHhcCChHH-HHHHHHHc-----CC-----CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C
Q 043608 334 VPVCNAILTMYAKCSVLCN-ALLVFKEL-----GK-----NA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQ----I 397 (579)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~-----~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~ 397 (579)
..+|..+|..+++.++..+ |..+..++ |. .| +...|...+..|.+..+.+-|.++-.-+.... +
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 9999999998888877654 33333333 21 12 44557777888888888888877765443321 3
Q ss_pred CCcH---hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC----hhhH
Q 043608 398 KPDH---ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD----VVSW 470 (579)
Q Consensus 398 ~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~ 470 (579)
.|+. .-|..+....|.....+.....++.|.-.-.-|+..+...++++..-.+.++-.-+++..+..-+ ....
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ 471 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR 471 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence 3442 24666777888889999999999999977788899999999999988898888888887776422 1111
Q ss_pred HHHHHHHHhcC-C-------------------c-HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 471 SSLILGYAQFG-C-------------------G-DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 471 ~~l~~~~~~~~-~-------------------~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
.-++..+++.+ . + +.....-.+|.+..+ .....+..+-.+.+.|..++|.+++..+.
T Consensus 472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 12222233222 1 1 111112234444433 34456666667889999999999999997
Q ss_pred HhhCCCCCcchhH---HHHHHHHhcCChhHHHHHHHhh
Q 043608 530 NEYGIIPTREHCS---CVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 530 ~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+-.|.....+ .+++.-.+.++...|..+++-|
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6644455555555 5666667888899999998877
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.6e-13 Score=132.23 Aligned_cols=526 Identities=11% Similarity=0.036 Sum_probs=338.0
Q ss_pred hhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCC---CCCCeeehhHHhhhhhcCCChhhHH
Q 043608 45 CSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKM---PQRNVVSWTAMIAGCSQNYQENDAI 121 (579)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (579)
+...|+.++|.+++.++++.. +.....|..|..+|-..|+.+++...+-.. .+.|...|-.+.....+.|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 445588888888888888877 667788888888888888888887754332 2445677888888888888888888
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChh----HHHHHHHHHhcCCCHHHHHHHhccc
Q 043608 122 KLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLI----AQNALIAMYTKFDRILDARNVFSGI 197 (579)
Q Consensus 122 ~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (579)
-+|.+.++.. +++...+-.-+..|-+.|+...|...+.++....++.|.. .-..+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888888763 4455555555667778888888888888888876544432 2334456666777778888887765
Q ss_pred CCC-----cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhH----------------------HHHH-HH--
Q 043608 198 ARK-----DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIF----------------------GSVF-SA-- 247 (579)
Q Consensus 198 ~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~----------------------~~~l-~~-- 247 (579)
... +...++.++..+.+...++.|......+..... .+|+.-+ ..-+ ..
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~-e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES-EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc-CCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 542 445778888888888888888888877776221 2222221 1100 10
Q ss_pred HHHH----------HHHHhhcC--CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccch
Q 043608 248 CSNF----------ARILFNEI--DSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL 315 (579)
Q Consensus 248 ~~~~----------~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 315 (579)
|.-. ...+.+.. +.-+...|.-+.+++...|++.+|+.+|..+......-+...|..+..++...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 1000 11111111 23456778889999999999999999999998875555677888888999999999
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCCHHH
Q 043608 316 YQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN-----------ADSVSWNSIIAACLQHNQAEE 384 (579)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~ 384 (579)
+.|.+.|+.++... +.+..+-..|...+.+.|+.++|.+.+..+-.+ |+....-.....+...|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998875 335566667888889999999999999886211 222233344555667788777
Q ss_pred HHHHHHHHHHCC----------------------CCCcHhHHHHHHHHHhccCChHHHHHHHH------HHHHcCCCCch
Q 043608 385 LFRLFSRMLASQ----------------------IKPDHITFNDVMGACAKMASLEMVTQLHC------YITKTGLAFDV 436 (579)
Q Consensus 385 a~~~~~~m~~~~----------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~ 436 (579)
-..+..+|...+ ......+...++.+-.+.++......-.. -....++..+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 666555554321 11122223333333333333222221111 11112222221
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHhhCCC------CCh---hhHHHHHHHHHhcCCcHHHHHHHHHHHhC-CC--CCC-
Q 043608 437 --FVMNGLMDIYIKCGSLGSARKLFNFMEN------PDV---VSWSSLILGYAQFGCGDEALKLFTRMRSL-GV--SPN- 501 (579)
Q Consensus 437 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~--~p~- 501 (579)
..+.-++..+++.++.++|+.+...+.. ++. ..-...+.+.+..+++..|...++.|... +. .|.
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3455677889999999999999988874 222 12244566778899999999999999865 11 222
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--cchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhh
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT--REHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLL 577 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 577 (579)
...|+...+...+.|+-.--.+++.... ...|+ +.........+..++.+.-|.+.+-+. ...||.-..+-+|
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 2345545555566555444344443333 22332 233334456677889999999877666 4567755555443
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=4.5e-15 Score=131.45 Aligned_cols=487 Identities=12% Similarity=0.104 Sum_probs=259.1
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHH-HHHHHHHccCChhhHHHhhcCCCC--CC------eeehhHHhhh
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQN-HILNMYGKCGSLEDARMGFDKMPQ--RN------VVSWTAMIAG 110 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~ 110 (579)
.|...|.....+.+|+..|+-+.+...-|+..... .+-..+.+..++.+|++.++.... |+ ....+.+...
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34445556666777777777777666555544332 233556666777777776654431 21 2234555556
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDA 190 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 190 (579)
+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|......+|..-| .+..
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~~~----- 351 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IKEK----- 351 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cCCc-----
Confidence 77777777777777777665 566665555555555667777777777777654333322211 0000
Q ss_pred HHHhcccCCCcHhhHH-----HHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCC-
Q 043608 191 RNVFSGIARKDVTSWG-----SMIAAFSKLG--YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSP- 262 (579)
Q Consensus 191 ~~~~~~~~~~~~~~~~-----~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~- 262 (579)
..|+....+ -.+.-.-+.. +.++++-.-.++..--+ .|+ |..-...|.... -.....|
T Consensus 352 -------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi-~~~---fa~g~dwcle~l---k~s~~~~l 417 (840)
T KOG2003|consen 352 -------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVI-APD---FAAGCDWCLESL---KASQHAEL 417 (840)
T ss_pred -------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcccc-ccc---hhcccHHHHHHH---HHhhhhhh
Confidence 001111111 1111111110 01111111111110000 111 000001110000 0000000
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHH--HHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHH
Q 043608 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSL--LCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAI 340 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (579)
-...--.-...+.+.|+++.|.++++-+.+..-+.-...-+.+ +.......++..|.++-+..+... .-++.....-
T Consensus 418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nk 496 (840)
T KOG2003|consen 418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNK 496 (840)
T ss_pred hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcC
Confidence 0000001123466778888888888777655433322222222 122222344555555555544332 1122222222
Q ss_pred HHHHHhcCChHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCCh
Q 043608 341 LTMYAKCSVLCNALLVFKELGKNADSV---SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASL 417 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 417 (579)
.+.....|+++.|.+.+++.-.. |.. ....+.-.+-..|+.++|+..|-++..- +..+...+..+...|....+.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~n-dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNN-DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcC-chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 22233467888888888776322 222 2222233355677888888877766443 334556666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 418 EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
..|.+++.+.... ++.|+.+...|.+.|-+.|+-.+|.+.+-+--. .+..+..-|..-|....-+++++.+|++..
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7787777665543 345677788888888888888888777654442 455555556666777777788888888765
Q ss_pred hCCCCCChhHHHHHHHHh-hccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 495 SLGVSPNLVTLVGVLTAC-SHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 495 ~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
- +.|+..-|..++..| .+.|++.+|..+++..-+ .++.+.+.+..|++.+...| ..+|.++-++
T Consensus 654 l--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg-l~d~key~~k 718 (840)
T KOG2003|consen 654 L--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG-LKDAKEYADK 718 (840)
T ss_pred h--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc-chhHHHHHHH
Confidence 4 578888787666554 467888888888888775 56677777777888777666 3445444433
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.70 E-value=8.5e-14 Score=133.40 Aligned_cols=487 Identities=11% Similarity=0.044 Sum_probs=297.6
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCC
Q 043608 21 AYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRN 100 (579)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 100 (579)
++-.+... |+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++....+.++.+.+. +|.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 44445555 99999999999999999999999999 9999998888888899999999988888888876 788
Q ss_pred eeehhHHhhhhhcCCChhhHHHHHHH-H-------HHCCCCCCcccHHHHHHHh--------------cCCCcchhHHHH
Q 043608 101 VVSWTAMIAGCSQNYQENDAIKLYIQ-M-------LQSGVMPGQFTFGSIIKAC--------------SGLGSVCLGRQL 158 (579)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~-~-------~~~g~~p~~~~~~~li~~~--------------~~~~~~~~a~~~ 158 (579)
..+|..|..+|.+.||... .+..++ | ...|+......+-..++++ ...|-++.++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999866 222222 2 2223222112221121221 122222222222
Q ss_pred HHHHHHhccCCChhHHHHHHHHHhcC-CCHHHHHHHhcccCC-CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 043608 159 HAHVIKSEHGSHLIAQNALIAMYTKF-DRILDARNVFSGIAR-KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQP 236 (579)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p 236 (579)
+..+....... +... +++-.... ..+++-....+...+ +++.+|..++.+-..+|+.+.|..++.+|.++|.
T Consensus 162 l~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf--- 235 (1088)
T KOG4318|consen 162 LAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF--- 235 (1088)
T ss_pred HhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC---
Confidence 22221111000 0111 23333322 334444444444444 6888999999999999999999999999999998
Q ss_pred ChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchh
Q 043608 237 NEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLY 316 (579)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 316 (579)
+-+.+-|-.|+-+ .++...+..+++.|.+.|+.|+..|+...+..+...|...
T Consensus 236 ------------------------pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 236 ------------------------PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred ------------------------Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 5555555555544 7778888888888888889998888877666655533221
Q ss_pred hHH-----------HHHHHHHH-------------------------cCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 317 QGM-----------QVHSYIIK-------------------------MGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 317 ~a~-----------~~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
.+. .++..+.. .|+.....+|...+. ....|.-++...+-..+
T Consensus 289 ~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l 367 (1088)
T KOG4318|consen 289 YGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQL 367 (1088)
T ss_pred hcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhh
Confidence 111 01111100 122222222222221 22245555555555444
Q ss_pred CCC------CChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCCCCcHh----------
Q 043608 361 GKN------ADSVSWNSIIAACLQHN----------------------QAEELFRLFSRMLASQIKPDHI---------- 402 (579)
Q Consensus 361 ~~~------~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~m~~~~~~p~~~---------- 402 (579)
..+ -++..|..++.-|.+.- ...+..++.... .||..
T Consensus 368 ~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~ 442 (1088)
T KOG4318|consen 368 LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSST 442 (1088)
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHH
Confidence 111 13334544444443321 111111111111 22211
Q ss_pred ------------------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 043608 403 ------------------TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN 464 (579)
Q Consensus 403 ------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 464 (579)
.-+.++..|+..-+..++...-++....-+ ...|..|++.++.....+.|..+.++...
T Consensus 443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~ 519 (1088)
T KOG4318|consen 443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDT 519 (1088)
T ss_pred HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcc
Confidence 123344445555455555544444433322 26688899999999999999999999886
Q ss_pred CC------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC-CCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 465 PD------VVSWSSLILGYAQFGCGDEALKLFTRMRSLGV-SPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 465 ~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
+| ..-+..+.+.+.+.+....+..+++++.+.-. .|+ ..++..+++..+..|+.+...++.+-+... |+..
T Consensus 520 ~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~e 598 (1088)
T KOG4318|consen 520 RDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSE 598 (1088)
T ss_pred cchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhh
Confidence 54 34567788888899999999999999987422 222 345667777788889988888888877765 6655
Q ss_pred CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 537 TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+ ..|+....+.++...|.+..+..
T Consensus 599 t----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 599 T----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred c----ccceEEEeeccchhhhhhcchHH
Confidence 3 34556667788888888776655
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=8.3e-14 Score=123.54 Aligned_cols=468 Identities=12% Similarity=0.056 Sum_probs=296.6
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHH-HHHHHhhcchhhhhhhhHHHHHHHhCCCCCh----hHHHHHHHH
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYA-GLISACSSLRSLQLGRKVHDHILLSKCQPDV----VLQNHILNM 79 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 79 (579)
|.+.|..+.-..+|+-.|+-+.+. ..-|+...+. .+-..+.+.+++.+|+.+|+..+..-...+. ...+.+--.
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 445566667778899999988776 5556665443 3455678889999999999988876433333 334444456
Q ss_pred HHccCChhhHHHhhcCCCC--CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccH--------HHHHHHhcCC
Q 043608 80 YGKCGSLEDARMGFDKMPQ--RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTF--------GSIIKACSGL 149 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~--------~~li~~~~~~ 149 (579)
+.+.|++++|+..|+...+ ||..+-..|+-.+..-|+-++..+.|.+|+.-...||..-| ..|+.-..+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 6789999999999998874 77655444444445568999999999999876555554433 1122211111
Q ss_pred Ccc--------hhHHHHHHH---HHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCc--HhhHHHHHHHHHhcC
Q 043608 150 GSV--------CLGRQLHAH---VIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKD--VTSWGSMIAAFSKLG 216 (579)
Q Consensus 150 ~~~--------~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~ 216 (579)
..+ ..|.+..-. +..--+.|+... ..+-..+.++.-.... ...--.-..-+.+.|
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLEINKAGELLKNG 433 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence 100 011111111 000011111100 0111111111110000 000011233578899
Q ss_pred ChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHH-HHHHc-CCChHHHHHHHHHHHhCC
Q 043608 217 YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALI-AGVAS-HSNANEAMSLFSEMRDRE 294 (579)
Q Consensus 217 ~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~~~~~~a~~~~~~m~~~g 294 (579)
+++.|.++++-+.++.- +.....-+.|- -.|.+ ..++..|..+-+......
T Consensus 434 d~~~aieilkv~~~kdn---------------------------k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDN---------------------------KTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred CHHHHHHHHHHHHhccc---------------------------hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 99999999988876542 11112222222 22222 345666666655544221
Q ss_pred CCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcC--CCCChhhHHHH
Q 043608 295 LLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELG--KNADSVSWNSI 372 (579)
Q Consensus 295 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~l 372 (579)
.-+......--......|++++|.+.|++.+...-.-....||. .-.+-..|++++|++.|-.+. ..-+......+
T Consensus 487 -ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 487 -RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred -ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11111111112233456888899998888876543322223332 223566899999999987761 12256667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
...|-...+...|++++.+.... ++.|+..+..+...|-+.|+-..|.+.+-.--+. ++.+..+..-|...|....-+
T Consensus 565 aniye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHH
Confidence 88888899999999999876554 5667888999999999999999999987654443 456788888899999999999
Q ss_pred HHHHHHHhhCC--CCChhhHHHHHHHH-HhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 043608 453 GSARKLFNFME--NPDVVSWSSLILGY-AQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGL 517 (579)
Q Consensus 453 ~~A~~~~~~~~--~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 517 (579)
+.|..+|++.. +|+..-|..++..| .+.|++++|+.+++....+ ++-|..++..|++.|...|.
T Consensus 643 ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999765 89999999888665 4789999999999998875 66788899999999988874
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=8.4e-13 Score=126.75 Aligned_cols=452 Identities=12% Similarity=0.040 Sum_probs=231.1
Q ss_pred CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHH
Q 043608 99 RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALI 178 (579)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (579)
++..+|..++..-..+|+.+-|..++.+|.+.|.+.+..-|-.|+-+ .++...+..+++-|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 45556666666666677777777777777777777666666666554 566666777777777777777777766655
Q ss_pred HHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHH---------------------------------------hcCChH
Q 043608 179 AMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFS---------------------------------------KLGYEL 219 (579)
Q Consensus 179 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~---------------------------------------~~~~~~ 219 (579)
..+...|....+.....--.--....+..++++.. ..|.-+
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e 358 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGE 358 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCc
Confidence 55555443222111110000001111112211110 112222
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc---CCChHHHHHHHHHHHhC---
Q 043608 220 EALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS---HSNANEAMSLFSEMRDR--- 293 (579)
Q Consensus 220 ~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~--- 293 (579)
+..++...|. .|....-...+.+.....+..|.+...+........-.+... .....+..+.....+.+
T Consensus 359 ~veqlvg~l~-----npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~l 433 (1088)
T KOG4318|consen 359 EVEQLVGQLL-----NPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFL 433 (1088)
T ss_pred hHHHHHhhhc-----CCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHH
Confidence 2222222221 111111112222222224455555544433222111122221 22222333332222110
Q ss_pred -------------CCC-------CChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 043608 294 -------------ELL-------PDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNA 353 (579)
Q Consensus 294 -------------g~~-------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (579)
... +-...-+.++..|++..+..++...-+.....-+. ..|..+|+.++.....+.|
T Consensus 434 r~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~A 510 (1088)
T KOG4318|consen 434 RQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYA 510 (1088)
T ss_pred HHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHH
Confidence 001 11122344555566666666665444443333222 5688888888888888888
Q ss_pred HHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc-HhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 354 LLVFKELGKN-----ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQI-KPD-HITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 354 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
..+..++..+ .+..-+..+.+.+.+.+....+.+++.++.+.-. .|+ ..++..++...+..|+.+...++++-
T Consensus 511 l~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~ 590 (1088)
T KOG4318|consen 511 LSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADI 590 (1088)
T ss_pred HhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 8888887443 2344567777788888888888888888876422 222 34555566666666666666666665
Q ss_pred HHHcCCCC------------------------------chhHHHHH---------------------HHHHHHcCCHHHH
Q 043608 427 ITKTGLAF------------------------------DVFVMNGL---------------------MDIYIKCGSLGSA 455 (579)
Q Consensus 427 ~~~~~~~~------------------------------~~~~~~~l---------------------~~~~~~~~~~~~A 455 (579)
+...|+.. .+.....+ +..|.++|+..+|
T Consensus 591 lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a 670 (1088)
T KOG4318|consen 591 LVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDA 670 (1088)
T ss_pred HHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccch
Confidence 55443322 11111111 1224455555555
Q ss_pred HHHHhhCC---C----------------------CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 456 RKLFNFME---N----------------------PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 456 ~~~~~~~~---~----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
.++.+.-- + .+......|+..|.+.|+++.|..+|.++. +.|+..+...|+.
T Consensus 671 ~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAs 747 (1088)
T KOG4318|consen 671 GDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLAS 747 (1088)
T ss_pred hhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHH
Confidence 44443221 0 011122347778899999999999999987 6788888777777
Q ss_pred HhhccC---chHHHHHHHHHHHHhhCCCCCcc-hhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 511 ACSHVG---LVEEGLHLYRIMENEYGIIPTRE-HCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 511 ~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.+.. +..++....++..+.+...|+.. -|...+....+-...+.|.+.+.+.
T Consensus 748 Ilr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~ 805 (1088)
T KOG4318|consen 748 ILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERL 805 (1088)
T ss_pred HHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHH
Confidence 776544 45555555555544322222222 2222222333444555778888777
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=4.6e-12 Score=113.33 Aligned_cols=432 Identities=13% Similarity=0.116 Sum_probs=308.8
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhh
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLED 88 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 88 (579)
-..++++.+|..+|+++... ..-+...+...+..-.+++.+..|..+++.....-...| ..|-..+..=-..|++..
T Consensus 83 Eesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHH
Confidence 34567788999999999874 455667788888888899999999999999987653333 445555555567799999
Q ss_pred HHHhhcCCC--CCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 89 ARMGFDKMP--QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 89 A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
|.++|++.. +|+..+|++.|..=.+.+.++.|..+|++.+- +.|+..+|.--.+.-.+.|+...+..+|....+.-
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999999887 59999999999999999999999999999987 47999999988888889999999999999887642
Q ss_pred c--CCChhHHHHHHHHHhcCCCHHHHHHHhcccC----CC-cHhhHHHHHHHHHhcCChHHHHHH--------HHHHHhc
Q 043608 167 H--GSHLIAQNALIAMYTKFDRILDARNVFSGIA----RK-DVTSWGSMIAAFSKLGYELEALCH--------FNEMLHH 231 (579)
Q Consensus 167 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~ 231 (579)
- ..+...+.+...--..+..++.|.-+|+-.. +. ....|..+...--+-|+.....+. ++.++..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 1123344455554555677788887775433 32 234444444444444544333322 2222222
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-------HHHH
Q 043608 232 GAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL-------TVHS 304 (579)
Q Consensus 232 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ 304 (579)
+ +-|-.+|--.++.-...|+.+...++|+....+ ++|-.. .|.-
T Consensus 318 n----------------------------p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 318 N----------------------------PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLW 368 (677)
T ss_pred C----------------------------CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHH
Confidence 2 456777777888888889999999999999875 455221 2222
Q ss_pred HHHHh---hcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHH----HhcCChHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 043608 305 LLCAC---IGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMY----AKCSVLCNALLVFKEL-GKNADSVSWNSIIAAC 376 (579)
Q Consensus 305 ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~ 376 (579)
+=-+| ....+++.+.++++..++. ++....++.-+--+| .++.++..|.+++... |.-|...+|...|..=
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELE 447 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 21222 2467888889999888873 344555555444333 4567888888888654 7778888888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHcCCHHHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG-LAFDVFVMNGLMDIYIKCGSLGSA 455 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 455 (579)
.+.++++....+|++..+.+ +-|..+|......=...|+.+.|..+|....+.. +......+.+.|+.-...|.++.|
T Consensus 448 lqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 88888999999999888874 4466777777777777888899988888877432 344455666677777788888888
Q ss_pred HHHHhhCCC--CChhhHHHHHHH
Q 043608 456 RKLFNFMEN--PDVVSWSSLILG 476 (579)
Q Consensus 456 ~~~~~~~~~--~~~~~~~~l~~~ 476 (579)
..+++.+.+ +....|-++..-
T Consensus 527 R~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 527 RALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHhcccchHHHhHHHH
Confidence 888888874 455566655543
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=3.2e-12 Score=123.48 Aligned_cols=457 Identities=13% Similarity=0.096 Sum_probs=302.8
Q ss_pred HHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcch
Q 043608 77 LNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVC 153 (579)
Q Consensus 77 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~ 153 (579)
...+...|++++|.+++.++.+ .+..+|..|...|-..|+.+++...+--.-.. .+-|...|..+.....+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHH
Confidence 3344445999999999999885 45678999999999999999988776554333 2446678888888889999999
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcH--------hhHHHHHHHHHhcCChHHHHHHH
Q 043608 154 LGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDV--------TSWGSMIAAFSKLGYELEALCHF 225 (579)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~ 225 (579)
.|.-+|.+.++..+ ++....-.-...|-+.|+...|...|.++.+.++ ..--..++.+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998864 4455555567789999999999988888765322 12234466677788888999988
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-----------
Q 043608 226 NEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRE----------- 294 (579)
Q Consensus 226 ~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----------- 294 (579)
......+-. .-+...++.++..+.+..+++.+......+....
T Consensus 304 e~~~s~~~~--------------------------~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 304 EGALSKEKD--------------------------EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHhhccc--------------------------cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 887764220 3455567788888888888888888887776522
Q ss_pred ----------------CCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcC--CCCCchhHHHHHHHHHhcCChHHHHHH
Q 043608 295 ----------------LLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG--FDSNVPVCNAILTMYAKCSVLCNALLV 356 (579)
Q Consensus 295 ----------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (579)
+.++... ..++-++...+..+....+...+.+.+ +.-+...|..+..++...|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1222222 122333445555556666666666666 344567788888999999999999999
Q ss_pred HHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHH----
Q 043608 357 FKELGKN---ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYIT---- 428 (579)
Q Consensus 357 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~---- 428 (579)
|..+... -+...|-.+..+|...|.++.|.+.|+..... .|+ ...-..|...+.+.|+.++|.+.+..+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 9888332 24567888899999999999999999988776 343 3444556667788899999999988854
Q ss_pred ----HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---------C-----------------ChhhHHHHHHHHH
Q 043608 429 ----KTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---------P-----------------DVVSWSSLILGYA 478 (579)
Q Consensus 429 ----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~-----------------~~~~~~~l~~~~~ 478 (579)
..+..|+..........+...|+.++-..+-..+.. | ........+.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 233455666666677778888887775444433331 1 0111112222222
Q ss_pred hcCCcHHHHHH------HHHHHhCCCCCCh--hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcch----hHHHHH
Q 043608 479 QFGCGDEALKL------FTRMRSLGVSPNL--VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREH----CSCVVD 546 (579)
Q Consensus 479 ~~~~~~~a~~~------~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~ 546 (579)
+.++.....+- +.--...|+..+. ..+.-++.++++.|++++|..+...+...+-+.-+..+ -...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 22222111111 1111112222221 13455666778888888888888877765433333332 233455
Q ss_pred HHHhcCChhHHHHHHHhh
Q 043608 547 LLARAGCVHEAEDFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~ 564 (579)
+....+++..|.+.+..|
T Consensus 675 ~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSV 692 (895)
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 566788888888888777
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=1.7e-10 Score=107.64 Aligned_cols=473 Identities=12% Similarity=0.052 Sum_probs=296.5
Q ss_pred hhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCC
Q 043608 53 LGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGV 132 (579)
Q Consensus 53 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 132 (579)
.=.+++...+++- +.++..|...+ ...+.++|.-++.+..+--+. -.-|.-+|++..-++.|..+++..++. +
T Consensus 364 ~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~-i 436 (913)
T KOG0495|consen 364 NKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREI-I 436 (913)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 3345555555543 44555555443 345556677777666641111 122333455666778888888888775 5
Q ss_pred CCCcccHHHHHHHhcCCCcchhHHHHHHHHH----HhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC------cH
Q 043608 133 MPGQFTFGSIIKACSGLGSVCLGRQLHAHVI----KSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK------DV 202 (579)
Q Consensus 133 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~ 202 (579)
+-+...|.+....--..|+.+...+++++-. ..|...+..-|-.=...+-..|..-.+..+...+..- --
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 6677777777776677788887777766543 3455556555555555555555555555554443221 22
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHH
Q 043608 203 TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANE 282 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 282 (579)
.+|..-...|.+.+.++-|..+|....+-. +.+...|......--..|..+.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf----------------------------p~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF----------------------------PCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc----------------------------cchhHHHHHHHHHHHhcCcHHH
Confidence 467777777777777777777777666543 3445556666655566677777
Q ss_pred HHHHHHHHHhCCCCCChH-HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-
Q 043608 283 AMSLFSEMRDRELLPDGL-TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL- 360 (579)
Q Consensus 283 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 360 (579)
...+|++.... .|-.. .+.......-..|+...|..++..+.+.... +..++-..+..-.....+++|..+|...
T Consensus 569 l~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 569 LEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 77777777765 34333 3333345556667888888888777776533 6667777777777777888888887766
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHH
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVM 439 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 439 (579)
...|+...|.--+..-.-.++.++|.+++++..+. -|+. ..|..+.+.+-+.++.+.|.+.|..-.+. ++..+..|
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 44456666666666666677778888887777665 4443 34555556666777777777766543332 23355666
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC----C---------------
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL----G--------------- 497 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~--------------- 497 (579)
-.|...-.+.|.+-.|..++++..- .+...|-..|+.-.+.|+.+.|..+..+..+. |
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 6666666777777777777776652 34566777777777777777777766655432 1
Q ss_pred ----------CCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhh-c
Q 043608 498 ----------VSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQM-A 565 (579)
Q Consensus 498 ----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 565 (579)
+.-|++.+..+...+-...+++.|.+.|++..+. .| ..++|.-+.+.+.+.|.-++-.+++++. .
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~---d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK---DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 1234444555555666666777777777777643 33 3456666777777777777777777766 3
Q ss_pred CCCC
Q 043608 566 CDAD 569 (579)
Q Consensus 566 ~~~~ 569 (579)
..|.
T Consensus 880 ~EP~ 883 (913)
T KOG0495|consen 880 AEPT 883 (913)
T ss_pred cCCC
Confidence 3443
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=6.3e-10 Score=103.95 Aligned_cols=446 Identities=11% Similarity=0.021 Sum_probs=256.7
Q ss_pred HHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHH----HHHCCCCCCcccHHHHHHHhcCCCcc
Q 043608 80 YGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQ----MLQSGVMPGQFTFGSIIKACSGLGSV 152 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~g~~p~~~~~~~li~~~~~~~~~ 152 (579)
|++..-++.|.++++...+ .+...|-+-...=-.+|+.+...+++.+ +...|+..+...|..=...|-..|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 3344445555555544442 2334444333333344555554444433 22344444444444444444444554
Q ss_pred hhHHHHHHHHHHhccCC--ChhHHHHHHHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 153 CLGRQLHAHVIKSEHGS--HLIAQNALIAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 153 ~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
-.+..+....+..|+.. -..+|..-...|.+.+.++-|+.+|....+- +...|...+..--..|..++...+|++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44444444444444321 1234444444455555555555544433321 223333333333334444444444444
Q ss_pred HHhcCCCCCChHhHHHHHHHHHHH------HHHHhhcCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 043608 228 MLHHGAYQPNEFIFGSVFSACSNF------ARILFNEID---SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD 298 (579)
Q Consensus 228 m~~~~~~~p~~~~~~~~l~~~~~~------~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 298 (579)
.... -|....+-.+.....-. ++.++.... +.+...|-..+.......+++.|..+|.+... ..|+
T Consensus 576 av~~---~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgT 650 (913)
T KOG0495|consen 576 AVEQ---CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGT 650 (913)
T ss_pred HHHh---CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCc
Confidence 4433 11111111110000000 111111100 34666777777788888888888888877765 3666
Q ss_pred hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCC-hhhHHHHHHHH
Q 043608 299 GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNAD-SVSWNSIIAAC 376 (579)
Q Consensus 299 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~ 376 (579)
...|..-+..---.++.++|.+++++.++. ++.-...|..+.+.+-+.++++.|.+.|..= ..-|+ +..|-.+...=
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 666666666556677888888888777765 3444556777777777788888887776553 33233 44565555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSAR 456 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 456 (579)
-+.|+.-+|..++++..-.+ +-+...|...|..=.+.|+.+.|..+..+..+. ++.+...|..-|....+.++-..+.
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH
Confidence 66778888888888877664 446667777788888888888888887776653 3445566666666655555544444
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 457 KLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
..+++.. .|+...-.+...+-...++++|.+.|.+.++.+ +-+..+|..+...+...|.-+.-.+++..... ..|
T Consensus 808 DALkkce-~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~---~EP 882 (913)
T KOG0495|consen 808 DALKKCE-HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET---AEP 882 (913)
T ss_pred HHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc---cCC
Confidence 4444433 455556666777888889999999999999864 22456888889999999998998999998874 355
Q ss_pred Cc
Q 043608 537 TR 538 (579)
Q Consensus 537 ~~ 538 (579)
..
T Consensus 883 ~h 884 (913)
T KOG0495|consen 883 TH 884 (913)
T ss_pred CC
Confidence 53
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=2.4e-12 Score=122.54 Aligned_cols=279 Identities=10% Similarity=0.019 Sum_probs=210.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHH-HHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHH--HHHHHHHhcCChHHH
Q 043608 277 HSNANEAMSLFSEMRDRELLPDGLT-VHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCN--AILTMYAKCSVLCNA 353 (579)
Q Consensus 277 ~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 353 (579)
.|+++.|.+.+....+.. +.+.. |.....+..+.|+++.+.+.+..+.+.. |+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888765542 22233 3333455578999999999999998754 4443322 346788899999999
Q ss_pred HHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-------hHHHHHHHHHhccCChHHHHHHH
Q 043608 354 LLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-------ITFNDVMGACAKMASLEMVTQLH 424 (579)
Q Consensus 354 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~ 424 (579)
...++.+ ...| +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999987 2223 5667888999999999999999999999988755332 12333344334444556666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhH
Q 043608 425 CYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVT 504 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 504 (579)
+.+-+. .+.++.....+...+...|+.++|.+.+++..+.....--.++.+.+..++.+++.+..++..+.. +-|...
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l 330 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLL 330 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHH
Confidence 655332 245788888999999999999999999988875222222334555567799999999999999862 334557
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 505 LVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 505 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+.+.|...|++++|.+.|+...+ ..|+...+..+..++.+.|+.++|.+++++-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999999999999999985 4799999999999999999999999999876
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=3e-12 Score=122.64 Aligned_cols=285 Identities=12% Similarity=-0.026 Sum_probs=209.2
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHHH-HHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 043608 275 ASHSNANEAMSLFSEMRDRELLPDGLTV-HSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNA 353 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (579)
...|+++.|.+.+....+. .|+...+ -....+....|+.+.+.+.+....+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999887665 4554443 344567788899999999999988765333333444567888899999999
Q ss_pred HHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH---hccCChHHHHHHHHHHH
Q 043608 354 LLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC---AKMASLEMVTQLHCYIT 428 (579)
Q Consensus 354 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~ 428 (579)
...++.+ ...| +......+...+...|++++|.+++..+.+.++.++......-..+. ...+..+.+.+.+..+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999987 2223 55678889999999999999999999999987543332211111111 22223333334555544
Q ss_pred HcCC---CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhh---HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 429 KTGL---AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVS---WSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 429 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
+... +.++..+..+...+...|+.++|.+.+++..+ ||... ...........++.+.+.+.+++..+. .|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 4332 23788888999999999999999999999875 55442 122222334567888999999888875 45
Q ss_pred C-h--hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 501 N-L--VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 501 ~-~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+ + ....++.+.|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++-
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 4 56678999999999999999999954432 55799999999999999999999999999875
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=8.1e-10 Score=99.29 Aligned_cols=479 Identities=10% Similarity=0.044 Sum_probs=283.1
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--CCe-eehhHHhhhhhcCCChhhHHHHH
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--RNV-VSWTAMIAGCSQNYQENDAIKLY 124 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~ 124 (579)
.+++..|..+|+..+..+ ..+...|...+.+=.++..+..|..++++... |-+ ..|.-.+..=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 445555666666665544 33445555555555555566666666655542 211 12332332223345666666666
Q ss_pred HHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC----
Q 043608 125 IQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK---- 200 (579)
Q Consensus 125 ~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 200 (579)
++..+- .|+...|.+.|+.-.+.++.+.|..+++..+-. .|+...|-....---+.|....+.++++...+.
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 665553 566666666666555556666666666555432 355555555555555556655555555544321
Q ss_pred --cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHcC
Q 043608 201 --DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSP-DLASWNALIAGVASH 277 (579)
Q Consensus 201 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 277 (579)
+...+.+....-.+...++.|.-+|+-.++. +++. ....|......--+-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---------------------------~pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH---------------------------IPKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------cCcccHHHHHHHHHHHHHHh
Confidence 1122333333333344445555555444433 1111 133444444444445
Q ss_pred CChHHHHHHH--------HHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc-hhHHHHHHH-----
Q 043608 278 SNANEAMSLF--------SEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV-PVCNAILTM----- 343 (579)
Q Consensus 278 ~~~~~a~~~~--------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~----- 343 (579)
|+.....+.. +.+... -+-|-.++.-.+..-...|+.+...++|+..+..-.+.+. ..+...|-.
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 6554444332 333333 2446667777777777889999999999999876433221 112222211
Q ss_pred ---HHhcCChHHHHHHHHHc-C-CCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc
Q 043608 344 ---YAKCSVLCNALLVFKEL-G-KNADSVSWN----SIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414 (579)
Q Consensus 344 ---~~~~~~~~~a~~~~~~~-~-~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 414 (579)
-....+++.+.++|+.. . .+....||. ....--.++.+...|.+++.... |..|...+|...|..=.+.
T Consensus 373 lyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 373 LYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence 12467889999999875 2 222333443 33333457889999999998775 4589999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC-CCC----hhhHHHHHHHHHhcCCcHHHHHH
Q 043608 415 ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME-NPD----VVSWSSLILGYAQFGCGDEALKL 489 (579)
Q Consensus 415 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~ 489 (579)
++++....++++..+.++. +..++......-...|+.+.|..+|+-.. +|. ...|.+.|..-...|.++.|..+
T Consensus 451 ~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 9999999999999987643 66778877888888999999999999776 454 34566666666789999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhh-----ccC-----------chHHHHHHHHHHHHhhCCCCCcchhHHHHHHH----H
Q 043608 490 FTRMRSLGVSPNLVTLVGVLTACS-----HVG-----------LVEEGLHLYRIMENEYGIIPTREHCSCVVDLL----A 549 (579)
Q Consensus 490 ~~~m~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 549 (579)
++++.+. .+....|..+...-. +.| ....|..+|++....+.-.-+..--..|+.+. .
T Consensus 530 YerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~ 607 (677)
T KOG1915|consen 530 YERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEE 607 (677)
T ss_pred HHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9999985 344445555554332 334 56788889988765432222222223333333 3
Q ss_pred hcCChhHHHHHHHhh
Q 043608 550 RAGCVHEAEDFINQM 564 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~ 564 (579)
..|+......+-.+|
T Consensus 608 ~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 608 TFGTEGDVERVQSKM 622 (677)
T ss_pred hcCchhhHHHHHHhc
Confidence 445555555555555
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.5e-11 Score=107.55 Aligned_cols=301 Identities=15% Similarity=0.062 Sum_probs=199.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCC
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD--SNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 349 (579)
.++-...+.+++..-.+.....|.+-....-+....+.....++++|+.+|+++.+..+- .|..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444445567777777777777776555555555555556777888888888888877321 144556555533322222
Q ss_pred hH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 350 LC-NALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 350 ~~-~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
+. -|..+++--.. .+.|..++.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+.++...
T Consensus 315 Ls~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 11 12222222122 34466666677777788888888888887763 2234456666677888888888888888887
Q ss_pred HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHH
Q 043608 429 KTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTL 505 (579)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 505 (579)
+.+ +.|-..|-.|.++|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 765 33777788888888888888888888887763 577888888888888888888888888888765 3456778
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhh---C-CCC-CcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhh
Q 043608 506 VGVLTACSHVGLVEEGLHLYRIMENEY---G-IIP-TREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLL 577 (579)
Q Consensus 506 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 577 (579)
..|...|-+.++.++|...+++..+.. | ..| ......-|...+.+.+++++|-.+.... ...+...--++|+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~Ll 547 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHH
Confidence 888888888888888888888776532 2 122 1222333566677888888888876665 2244444444443
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=8.3e-15 Score=133.26 Aligned_cols=254 Identities=15% Similarity=0.109 Sum_probs=98.7
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcC-CCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccC
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTN-IRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCG 84 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (579)
-..+.+.|++++|+++++..... . .+.++..+..+.......++++.|.+.++.+...+ +.++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 45677788888888888655443 2 23344444455555667788888888888888766 4466677777776 6788
Q ss_pred ChhhHHHhhcCCCC--CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCC-CCCCcccHHHHHHHhcCCCcchhHHHHHHH
Q 043608 85 SLEDARMGFDKMPQ--RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSG-VMPGQFTFGSIIKACSGLGSVCLGRQLHAH 161 (579)
Q Consensus 85 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (579)
++++|.++++..-+ ++...+...+..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776643 566667777888888888888888888876532 234556677777788888888888888888
Q ss_pred HHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCh
Q 043608 162 VIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNE 238 (579)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 238 (579)
.++..+ .+..+...++..+...|+.+++.++++...+ .|...+..+..++...|+.++|+.+|++..+..
T Consensus 172 al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~------ 244 (280)
T PF13429_consen 172 ALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN------ 244 (280)
T ss_dssp HHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS------
T ss_pred HHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc------
Confidence 888753 3566777888888888888887666655533 356677788888888888888888888887764
Q ss_pred HhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 043608 239 FIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMR 291 (579)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (579)
+.|+.....+.+++...|+.++|.++.++..
T Consensus 245 ----------------------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 ----------------------PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ----------------------TT-HHHHHHHHHHHT----------------
T ss_pred ----------------------ccccccccccccccccccccccccccccccc
Confidence 4567777778888888888888888777654
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=1.2e-12 Score=124.67 Aligned_cols=275 Identities=9% Similarity=-0.058 Sum_probs=181.7
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHH-HHHHHccCChhhHHHhhcCCCC--CCeeehh--HHhhhhhcCCChhhHHH
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHI-LNMYGKCGSLEDARMGFDKMPQ--RNVVSWT--AMIAGCSQNYQENDAIK 122 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~ 122 (579)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|.+.++++.+ |+..... .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 577777776666654432 122322222 3333577777777777777664 3332222 22445667777888888
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCCh-------hHHHHHHHHHhcCCCHHHHHHHhc
Q 043608 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHL-------IAQNALIAMYTKFDRILDARNVFS 195 (579)
Q Consensus 123 ~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~ 195 (579)
.++++.+.+ +-+......+...+...|+++.|.+++..+.+.+..++. ..+..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 877777663 334556666777777777888888777777776543322 133344444445556667777777
Q ss_pred ccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 043608 196 GIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIA 272 (579)
Q Consensus 196 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~ 272 (579)
.+++ .++.....+...+...|+.++|.+.+++..+. +++... .++.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-----------------------------~~~~~l--~~l~ 302 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-----------------------------QYDERL--VLLI 302 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------------------------CCCHHH--HHHH
Confidence 6654 36677788888888888888888888887764 333311 1233
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChH-HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChH
Q 043608 273 GVASHSNANEAMSLFSEMRDRELLPDGL-TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLC 351 (579)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (579)
+....++.+++++.++...+. .|+.. .+..+-..|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.+
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 444558888888888888765 45544 4556667788888888888888888875 577777778888888888888
Q ss_pred HHHHHHHHc
Q 043608 352 NALLVFKEL 360 (579)
Q Consensus 352 ~a~~~~~~~ 360 (579)
+|.+++++-
T Consensus 379 ~A~~~~~~~ 387 (398)
T PRK10747 379 EAAAMRRDG 387 (398)
T ss_pred HHHHHHHHH
Confidence 888888764
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.55 E-value=1e-09 Score=102.37 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=53.2
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHh-CCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCC
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLS-KCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNY 115 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (579)
.+...+..+...|++......|+..+.. .+.-....|...+......|-++.+..++++..+-++..-+..|..+++.+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 4444455555566666666666655532 122233455555665555666666666666666555555566666666666
Q ss_pred ChhhHHHHHHHHHH
Q 043608 116 QENDAIKLYIQMLQ 129 (579)
Q Consensus 116 ~~~~a~~~~~~~~~ 129 (579)
++++|.+.+.....
T Consensus 184 ~~~eaa~~la~vln 197 (835)
T KOG2047|consen 184 RLDEAAQRLATVLN 197 (835)
T ss_pred chHHHHHHHHHhcC
Confidence 66666666665543
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=3.8e-14 Score=128.89 Aligned_cols=258 Identities=12% Similarity=0.042 Sum_probs=62.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHH-HHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLL-CACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC 347 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (579)
.+...+.+.|++++|+++++.......+|+...|..++ ..+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777888888888886554443234444444333 3444566677777777777665432 44444444444 455
Q ss_pred CChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 348 SVLCNALLVFKEL-GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 348 ~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
+++++|.+++... ...++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666665555443 222344445555555555555555555555544322 12333344444444445555555555555
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHH
Q 043608 426 YITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTL 505 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 505 (579)
+..+..+. |.. ....++..+...|+.+++.++++...+.. +.|+..+
T Consensus 171 ~al~~~P~-~~~-------------------------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~ 217 (280)
T PF13429_consen 171 KALELDPD-DPD-------------------------------ARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLW 217 (280)
T ss_dssp HHHHH-TT--HH-------------------------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred HHHHcCCC-CHH-------------------------------HHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHH
Confidence 54443311 233 44444445555555555444444444432 2333444
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 506 VGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 506 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
..+..++...|+.++|..++++..+. .+.|+.....+.+++...|+.++|.++..+
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHhccccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 45555555555555555555554432 122444445555555555555555555443
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=2e-11 Score=117.03 Aligned_cols=127 Identities=13% Similarity=-0.005 Sum_probs=82.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhH--H-HHHHHHHhccCChHHHHHHHHHHHHcCCCCch--hHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHIT--F-NDVMGACAKMASLEMVTQLHCYITKTGLAFDV--FVM 439 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 439 (579)
+...+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.++...+.. +-|+ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 5566666777777777777777777777665 233321 1 111122233456667777776666543 2233 556
Q ss_pred HHHHHHHHHcCCHHHHHHHHhh--CC--CCChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 440 NGLMDIYIKCGSLGSARKLFNF--ME--NPDVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~--~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
.++...+.+.|++++|.+.|+. .. .|+...+..+...+.+.|+.++|.+++++..
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777778888888888888883 32 4777777778888888888888888887754
No 47
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=3.9e-10 Score=97.47 Aligned_cols=451 Identities=13% Similarity=0.032 Sum_probs=254.3
Q ss_pred HHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChh
Q 043608 42 ISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQEN 118 (579)
Q Consensus 42 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 118 (579)
+.-+...+++..|+.+++.-...+-+....+-.-+..++.+.|++++|+..+..+.+ ++...+-.|...+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 444556677888888877766544333334444555666678888888887766653 45555666665555567777
Q ss_pred hHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC
Q 043608 119 DAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA 198 (579)
Q Consensus 119 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (579)
+|..+-....+ ++.....+++..-+.++-++-..+...+... ..-.-+|.+.....-.+.+|+++++++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766554322 2223334444444556655555554443322 1222234444444456778888888776
Q ss_pred CCcH--hhHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 043608 199 RKDV--TSWGS-MIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVA 275 (579)
Q Consensus 199 ~~~~--~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 275 (579)
..+. ...|. +.-+|.+..-++-+.++++--...- +.+..+-|.......
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~----------------------------pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF----------------------------PDSTIAKNLKACNLF 230 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHh
Confidence 5433 23333 3345667777777777777666551 223333444333333
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH
Q 043608 276 SHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL 355 (579)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (579)
+.=.-..|.+-.+++.+.+-..-+..-..+-+-+.--.+-+.|.+++-.+.+. . +..-..++-.|.+.+++.+|..
T Consensus 231 Rl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~ 306 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAIS 306 (557)
T ss_pred hhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHH
Confidence 32222223333344433322111110001111122234556777776665543 1 2233345666888999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCcH-hHHHHHHHHHhccCChHHHHHHHHHH
Q 043608 356 VFKELGKNADSVSWNSIIAACLQHNQ-------AEELFRLFSRMLASQIKPDH-ITFNDVMGACAKMASLEMVTQLHCYI 427 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 427 (579)
+.+++... ++.-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|. .---++...+.-..+++++.-+++.+
T Consensus 307 L~Kdl~Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 307 LCKDLDPT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred HHhhcCCC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988543 32222221222233332 33455555544334332221 12223445555566788888888887
Q ss_pred HHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhhHH-HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh
Q 043608 428 TKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENP---DVVSWS-SLILGYAQFGCGDEALKLFTRMRSLGVSPNLV 503 (579)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 503 (579)
...-...|...+| +.++++..|++.+|+++|-.+..| |..+|. .|.++|.+.+.++.|..++-++. -+.+..
T Consensus 386 ~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~f 461 (557)
T KOG3785|consen 386 ESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERF 461 (557)
T ss_pred HHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHH
Confidence 7665554554444 788899999999999999888864 345554 46678889999998887765443 233344
Q ss_pred H-HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH
Q 043608 504 T-LVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS 542 (579)
Q Consensus 504 ~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 542 (579)
+ +..+.+-|.+.+.+=-|-+.|+.+.. ..|+++.|.
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnWe 498 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCccccC
Confidence 3 34555778899998888888888874 467766553
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.4e-09 Score=100.09 Aligned_cols=280 Identities=10% Similarity=0.035 Sum_probs=205.5
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
.+......-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+=..+.+.- +..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 34444555556677788888888888888765 24455555555667777787777777666666653 45677788888
Q ss_pred HHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHH
Q 043608 342 TMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEM 419 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 419 (579)
--|...|+..+|.+.|... ...| =...|-.+..+|+-.+..+.|+..|....+. ++-..--+..+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 8888889999999999775 2221 2446888888899999999999988877664 22222223344456777889999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------C----ChhhHHHHHHHHHhcCCcHHHHHH
Q 043608 420 VTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN------P----DVVSWSSLILGYAQFGCGDEALKL 489 (579)
Q Consensus 420 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~----~~~~~~~l~~~~~~~~~~~~a~~~ 489 (579)
|.++|....... +.|+.+.+.+.-.....+.+.+|..+|+.... + -..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998877543 34677777777777778889999888887652 1 234577788889999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 043608 490 FTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 490 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (579)
+++.... .+-+..++.++.-.|...|+++.|.+.|.+.. .+.|+-.+-..++..+.
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHHHHH
Confidence 9998876 24577888888888999999999999999887 67888776666666544
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.7e-10 Score=102.68 Aligned_cols=403 Identities=13% Similarity=0.043 Sum_probs=252.1
Q ss_pred HHhhhhhcCCChhhHHHHHHHHHHCCCCCC-cccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCC-hhHHHHHHHHHhc
Q 043608 106 AMIAGCSQNYQENDAIKLYIQMLQSGVMPG-QFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSH-LIAQNALIAMYTK 183 (579)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 183 (579)
....-|.++|++++|++.|.+.++. .|+ +.-|.....+|...|+++++.+--...++.+ |+ ...+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHh
Confidence 3445577899999999999999985 677 7778888889999999999888777766643 33 4455566667777
Q ss_pred CCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHH--------HHHHh-cC-CCCCChHhHHHHHHHHHHHHH
Q 043608 184 FDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHF--------NEMLH-HG-AYQPNEFIFGSVFSACSNFAR 253 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------~~m~~-~~-~~~p~~~~~~~~l~~~~~~~~ 253 (579)
.|++++|+.= .+-.+++..+....-.--+.+++ ++-.+ .+ .+-|+.....+.+.....
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~--- 263 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA--- 263 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc---
Confidence 8888877642 12222222222222222222222 22222 11 113443333333322211
Q ss_pred HHhhcCCCCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHhC-CCCCChH---------HHHHHHH--Hhhcccchh
Q 043608 254 ILFNEIDSPDLASWNALIAGVAS-----HSNANEAMSLFSEMRDR-ELLPDGL---------TVHSLLC--ACIGRLTLY 316 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~-g~~p~~~---------~~~~ll~--~~~~~~~~~ 316 (579)
+....+..+...++..+..++.. ...+.+|.+.+.+-... ...++.. .-..++. -+.-.|+.-
T Consensus 264 ~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~ 343 (606)
T KOG0547|consen 264 DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSL 343 (606)
T ss_pred cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCch
Confidence 01111111222233333332221 12355555555432211 1111111 1122222 234568888
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 317 QGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
.+.+-++..++....++ ..|.-+..+|...++.++.++.|+.. -.+-++.+|..-.....-.+++++|..=|++.+.
T Consensus 344 ~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888764433 33777777888999999999999876 1222666777777777778889999999998877
Q ss_pred CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC------
Q 043608 395 SQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD------ 466 (579)
Q Consensus 395 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~------ 466 (579)
.. +-+...|..+--+..+.+.++++...|++.++. ++-.+..|+...+.+...++++.|.+.|+...+ |+
T Consensus 423 L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v 500 (606)
T KOG0547|consen 423 LD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV 500 (606)
T ss_pred cC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc
Confidence 52 223455666666667888999999999988864 455788899999999999999999999987763 33
Q ss_pred -hhhH--HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 467 -VVSW--SSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 467 -~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
..++ -.++. +.-.+++..|++++++..+. .|. ...|..|...-...|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 11111 12347899999999999875 443 45888999999999999999999998764
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=2.4e-08 Score=93.48 Aligned_cols=521 Identities=12% Similarity=0.103 Sum_probs=299.7
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG 81 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (579)
|-..+..+.++|+...-...|++..+.=++..+...|...+......+-++-+..+++.-++. ++..-+-.+..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 455667788889999999999988775455666778888888888888888999999998854 4444677788889
Q ss_pred ccCChhhHHHhhcCCCCC----------CeeehhHHhhhhhcCCCh---hhHHHHHHHHHHCCCCCCc--ccHHHHHHHh
Q 043608 82 KCGSLEDARMGFDKMPQR----------NVVSWTAMIAGCSQNYQE---NDAIKLYIQMLQSGVMPGQ--FTFGSIIKAC 146 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~g~~p~~--~~~~~li~~~ 146 (579)
..+++++|.+.+..+... +-..|+.+-...+++.+. -...++++.+... -+|. ..|.+|..-|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 999999999888877631 223344444444433222 2233344443332 3333 3567777778
Q ss_pred cCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCC----------------------HHHHHHHhcccCCC----
Q 043608 147 SGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDR----------------------ILDARNVFSGIARK---- 200 (579)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~---- 200 (579)
.+.|.+++|..+|++....-. +..-++.+.+.|+.... ++-....|+.+..+
T Consensus 259 Ir~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 888888888888877665432 22222233333332111 11122222222211
Q ss_pred -----------cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCC-CChhhHH
Q 043608 201 -----------DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDS-PDLASWN 268 (579)
Q Consensus 201 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 268 (579)
++..|..-+ -+..|+..+-...+.+..+.- .|. ... .-...|.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~v--dP~---------------------ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTV--DPK---------------------KAVGSPGTLWV 391 (835)
T ss_pred HHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHcc--Ccc---------------------cCCCChhhHHH
Confidence 111111111 122344444445555444331 111 001 1124577
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCC---hHHHHHHHHHhhcccchhhHHHHHHHHHHcCC-----------CC--
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPD---GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGF-----------DS-- 332 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~-- 332 (579)
.+.+.|-..|+.+.|..+|++..+...+-- ..+|......=.+..+++.|..+.+.....-- ++
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 788888999999999999988876533221 12222222333456677777777766543211 11
Q ss_pred ----CchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-HH
Q 043608 333 ----NVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-TF 404 (579)
Q Consensus 333 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~ 404 (579)
+..+|...++.--..|-++....+++.+ ... ++...-....-+-.+.-++++.++|++-+..--.|+.. .|
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 2233444444445566677777777665 222 22221111222334556788888888766554455543 34
Q ss_pred HHHHHHHh---ccCChHHHHHHHHHHHHcCCCCchhHHHHH--HHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHHH
Q 043608 405 NDVMGACA---KMASLEMVTQLHCYITKTGLAFDVFVMNGL--MDIYIKCGSLGSARKLFNFMEN-----PDVVSWSSLI 474 (579)
Q Consensus 405 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~ 474 (579)
+..+.-+. ...+.+.|..+|++..+ |.+|...-+--| ...-.+.|....|.+++++... .-...||+.|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44443332 23478899999999998 655443221111 2222345778889999998763 2245677777
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHH---HHHHhhccCchHHHHHHHHHHHHhhCCCC--CcchhHHHHHHHH
Q 043608 475 LGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVG---VLTACSHVGLVEEGLHLYRIMENEYGIIP--TREHCSCVVDLLA 549 (579)
Q Consensus 475 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 549 (579)
.--...=-+.....+|++.++. -|+...-.. ....-.+.|..++|..++..-.+ -..| +...|...-..=.
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq--~~dPr~~~~fW~twk~FEv 705 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ--ICDPRVTTEFWDTWKEFEV 705 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh--cCCCcCChHHHHHHHHHHH
Confidence 6544444456677888888875 566554333 34445788999999999987765 3344 3445666666667
Q ss_pred hcCChhHHHHHH
Q 043608 550 RAGCVHEAEDFI 561 (579)
Q Consensus 550 ~~g~~~~A~~~~ 561 (579)
+.|+-+.-.+.+
T Consensus 706 rHGnedT~keML 717 (835)
T KOG2047|consen 706 RHGNEDTYKEML 717 (835)
T ss_pred hcCCHHHHHHHH
Confidence 888855444443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=6.5e-11 Score=100.95 Aligned_cols=289 Identities=7% Similarity=0.010 Sum_probs=181.8
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC-CCee------ehhHHhhhhhcCCChhhH
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ-RNVV------SWTAMIAGCSQNYQENDA 120 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a 120 (579)
+.++++|.+.|-+|.+.+ +.+..+..+|-+.|-+.|+.+.|+++.+.+.+ ||.. +.-.|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 457888888888888755 55566777888888888999999988887764 5433 233445557778888888
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC
Q 043608 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK 200 (579)
Q Consensus 121 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 200 (579)
..+|..+.+.| .--......|+..|-...+|++|+++-+++.+.+..+...-
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e--------------------------- 178 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE--------------------------- 178 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---------------------------
Confidence 88888887754 12233445566666666666666666666555543221100
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
=..-|.-|...+....+++.|..++.+..+.. +..+..--.+.+.....|++
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~----------------------------~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQAD----------------------------KKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC----------------------------ccceehhhhhhHHHHhccch
Confidence 01235556666666777888888887777663 23333334455777778888
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH-HHHH
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL-VFKE 359 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~ 359 (579)
+.|.+.++...+.+..--+.+...+..+|...|+.+.....+..+.+....+ ..-..+.+......-.+.|.. +.+.
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 8888888887776544445566677777777777777777777777664333 233333333333333444443 3445
Q ss_pred cCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 043608 360 LGKNADSVSWNSIIAACLQ---HNQAEELFRLFSRMLAS 395 (579)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~ 395 (579)
+..+|+...+..+|..-.. .|...+.+..++.|...
T Consensus 309 l~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 309 LRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 5677777777777766543 33455566666666554
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.5e-10 Score=98.78 Aligned_cols=282 Identities=12% Similarity=0.071 Sum_probs=200.1
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCC---chhHHHHHHHHHhcCChHH
Q 043608 276 SHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSN---VPVCNAILTMYAKCSVLCN 352 (579)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 352 (579)
-+++.++|.++|-+|.+. -+-+..+-.++-+-|.+.|..+.|+.+...+.+..--+. ......|..-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 357889999999999873 122334445666778889999999999988886521111 1233456677888899999
Q ss_pred HHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh----HHHHHHHHHhccCChHHHHHHHHH
Q 043608 353 ALLVFKELGKNA--DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI----TFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 353 a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
|+.+|..+-..| -......++..|-...+|++|+++-+++...+-++... .|.-+...+....+.+.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999998884432 34567788889999999999999999888876555433 344555566667788889999988
Q ss_pred HHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh
Q 043608 427 ITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 502 (579)
..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|.+.|+.++....+.++.+.. +..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8876533 455555677888889999999999998886443 345677888999999999999999888763 444
Q ss_pred hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhc---CChhHHHHHHHhh
Q 043608 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA---GCVHEAEDFINQM 564 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 564 (579)
..-..+...-....-.+.|..++.+-..+ .|+...+..|++.-... |..++-...+.+|
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 44444444444444556666665555544 68888888888876533 4456666677777
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=3.8e-10 Score=99.45 Aligned_cols=249 Identities=11% Similarity=0.037 Sum_probs=135.1
Q ss_pred HhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHH
Q 043608 308 ACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEE 384 (579)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 384 (579)
+..+.|+.+.+-.++.++.+..-.++..+.-+........|+.+.|..-..++ ... ++........+|.+.|++..
T Consensus 127 AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHH
Confidence 33344444444444444444332334444444445555555555555444443 222 44455555666666666666
Q ss_pred HHHHHHHHHHCCCCCcH-------hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHH
Q 043608 385 LFRLFSRMLASQIKPDH-------ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARK 457 (579)
Q Consensus 385 a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 457 (579)
...++..|.+.|.-.+. .++..+++-+...+..+.-...|+..-+. .+.++..-.+++.-+.++|+.++|.+
T Consensus 206 ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 206 LLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHH
Confidence 66666666666543332 25556666555555555545555443321 23345555566666666677777766
Q ss_pred HHhhCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC
Q 043608 458 LFNFMEN--PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGII 535 (579)
Q Consensus 458 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 535 (579)
+.++..+ -|.. -...-.+.+-++.+.-++..++-.+. .+-++-.+.+|...|.+.+.|.+|.+.|+... ...
T Consensus 285 ~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~ 358 (400)
T COG3071 285 IIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLR 358 (400)
T ss_pred HHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcC
Confidence 6665553 2222 22223344555555555555554443 12233556666666777777777777777555 346
Q ss_pred CCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 536 PTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|+.++|.-+.+++.+.|+..+|.++.++.
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 77777777777777777777777766654
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.5e-09 Score=97.37 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=122.7
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc--CCChhHHHHHHHHHhcCCCHH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH--GSHLIAQNALIAMYTKFDRIL 188 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 188 (579)
+-.....+++..-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-.--...++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 333445555555556665555444333333333444455666666666666666532 223445554443222222211
Q ss_pred -HHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhH
Q 043608 189 -DARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASW 267 (579)
Q Consensus 189 -~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (579)
-|..++ .+.+=-+.|...+.+.|.-.++.++|...|++..+.+ +.....|
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN----------------------------p~~~~aW 367 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN----------------------------PKYLSAW 367 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC----------------------------cchhHHH
Confidence 111111 1111123444455555555666666666666665554 3444555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 043608 268 NALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC 347 (579)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (579)
+.+.+-|...++...|.+-|+...+-. +.|-..|-.+-++|.-.+...-|+-.|++..+.. +.|...+.+|.++|.+.
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHh
Confidence 555666666666666666666555431 2244445555555555555555555555555443 23445555555555555
Q ss_pred CChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 348 SVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 348 ~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
++.++|++.|... +.. +...+..+...|-+.++..+|...|.+-
T Consensus 446 ~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred ccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5555555555543 111 3344555555555555555555444443
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=2.1e-10 Score=101.06 Aligned_cols=286 Identities=11% Similarity=0.064 Sum_probs=190.6
Q ss_pred CCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHH
Q 043608 114 NYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNV 193 (579)
Q Consensus 114 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 193 (579)
.|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.+..+....++..+.-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58999999999887776533 34456666777788899999999999988876667778888888889999999988877
Q ss_pred hcccC---CCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHH
Q 043608 194 FSGIA---RKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNAL 270 (579)
Q Consensus 194 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 270 (579)
..+.. .+++.......++|.+.|++.....++..|.+.|.+.+.... .-...+|+.+
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~--------------------~le~~a~~gl 235 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA--------------------RLEQQAWEGL 235 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--------------------HHHHHHHHHH
Confidence 76544 457888899999999999999999999999999973221110 1122345556
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 271 IAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
++-....+..+.-...++..... .+-++..-..++.-+.+.|+.+.|.++..+..+++..|.. ...-.+.+-++.
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCc
Confidence 65555555555555555554432 3344455555666666677777777777777766665541 111122334444
Q ss_pred HHHHHHHHH----cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 351 CNALLVFKE----LGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 351 ~~a~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
+.-++..+. .+..| ..+.++...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++
T Consensus 311 ~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 433333332 23333 55666666777777777777777755543 66777777777777777777777776666
Q ss_pred HHH
Q 043608 427 ITK 429 (579)
Q Consensus 427 ~~~ 429 (579)
...
T Consensus 387 ~L~ 389 (400)
T COG3071 387 ALL 389 (400)
T ss_pred HHH
Confidence 553
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=2.2e-11 Score=114.12 Aligned_cols=284 Identities=13% Similarity=0.035 Sum_probs=198.4
Q ss_pred cCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhC--CCCChhHHHHHHHHHHccCChhh-
Q 043608 12 QNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSK--CQPDVVLQNHILNMYGKCGSLED- 88 (579)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~- 88 (579)
.-+.++|+..|+++... +.........+..+|...+++++|.++|+.+.+.. .-.+..+|.+.+-.+-+.-.+.-
T Consensus 332 ~y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 34677888888885542 44444566778888889999999999999888654 12255677777665543322222
Q ss_pred HHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCC-CcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc
Q 043608 89 ARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMP-GQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH 167 (579)
Q Consensus 89 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (579)
|..+. .+.+..+.+|.++...|.-+++.+.|++.|++..+. .| ...+|+.+.+-+....++|.|...|+..+...
T Consensus 410 aq~Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 22222 223456788999999999999999999999998875 44 56777777777888888888888888776532
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHH
Q 043608 168 GSHLIAQNALIAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSV 244 (579)
Q Consensus 168 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~ 244 (579)
+.+-..|-.+.-.|.+.++++.|+-.|++..+- +.+....+...+-+.|+.++|++++++.....
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld------------ 553 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD------------ 553 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC------------
Confidence 123345556677888888888888888877653 55666667777888888888888888887664
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-HHHHHHHHhhcccchhhHHHHHH
Q 043608 245 FSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL-TVHSLLCACIGRLTLYQGMQVHS 323 (579)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 323 (579)
+.|+..--..+..+...++.++|+..++++++. .|+.. .|..+...|.+.|+.+.|..-|.
T Consensus 554 ----------------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 554 ----------------PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred ----------------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 344444445566667778888888888888874 56544 44455567777777777777777
Q ss_pred HHHHcCCC
Q 043608 324 YIIKMGFD 331 (579)
Q Consensus 324 ~~~~~~~~ 331 (579)
.+.+...+
T Consensus 616 ~A~~ldpk 623 (638)
T KOG1126|consen 616 WALDLDPK 623 (638)
T ss_pred HHhcCCCc
Confidence 66665443
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.6e-09 Score=97.84 Aligned_cols=215 Identities=12% Similarity=0.024 Sum_probs=153.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 043608 277 HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLV 356 (579)
Q Consensus 277 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (579)
.|+.-.|..-|+........++. .|-.+...|....+.++....|....+.+ +-++.+|-.-.+++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 46666666666666654322222 14445556667777777777777777665 33667777777778888888888888
Q ss_pred HHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-
Q 043608 357 FKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA- 433 (579)
Q Consensus 357 ~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 433 (579)
|++. ...| ++..|-.+.-+..+.+.+++++..|++..++ ++.-+..|+.....+...++++.|.+.++..++....
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 8875 3333 5556777777777888999999999998877 4555778888889999999999999999888754322
Q ss_pred ------CchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 434 ------FDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 434 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
+.+.+--.++..- -.+++.+|..++.+..+-| ...|..|...-.+.|+.++|+++|++...
T Consensus 496 ~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1222222333222 3489999999999988644 45688888899999999999999998764
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=2.9e-11 Score=113.25 Aligned_cols=274 Identities=15% Similarity=0.135 Sum_probs=206.5
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCChHH-HH
Q 043608 278 SNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGF--DSNVPVCNAILTMYAKCSVLCN-AL 354 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~-a~ 354 (579)
-+..+|+..|..+... +.-+......+-.+|...++++++..+|+.+.+... .-+..+|.+.+.-+-+.-.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888885544 333445666777899999999999999999987632 2356677777655433222111 11
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043608 355 LVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKP-DHITFNDVMGACAKMASLEMVTQLHCYITKTGLA 433 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 433 (579)
.+.+. .+-.+.+|.++..+|..+++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+....
T Consensus 412 ~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 412 DLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 22222 2236779999999999999999999999998875 45 567888888888888899999999987664
Q ss_pred CchhHHHH---HHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHH
Q 043608 434 FDVFVMNG---LMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVG 507 (579)
Q Consensus 434 ~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 507 (579)
.++..|++ +.-.|.|.++++.|+-.|+++.+ .+.+....+...+-+.|+.|+|+.+++++.... +.|+.+--.
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 45666665 56779999999999999999986 345566667778889999999999999998764 234545445
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
-+..+...+++++|+..+++++. +.| +...+..+++.|.+.|+.+.|+.-|.=+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 66777888999999999999985 355 4557888999999999999998766544
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=9.5e-10 Score=101.20 Aligned_cols=278 Identities=14% Similarity=0.062 Sum_probs=212.7
Q ss_pred CCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHH
Q 043608 295 LLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSI 372 (579)
Q Consensus 295 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l 372 (579)
..-+.........-|...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++ ..+....+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 34455555556667778899999999999998875 556666666677888888766655555554 222356789888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
.--|...|+.++|.+.|.+.... .|. ...|..+..+++..+..++|...+...-+.-...... +--+.--|.+.++
T Consensus 319 g~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-~LYlgmey~~t~n 395 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-SLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHhcc
Confidence 88888999999999999987654 333 3467888899999999999999888776542221111 1223445888999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC--CCC---C-ChhHHHHHHHHhhccCchHHHH
Q 043608 452 LGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL--GVS---P-NLVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 452 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~---p-~~~~~~~l~~~~~~~g~~~~a~ 522 (579)
++-|.++|..... .|+...+-+.-.....+.+.+|..+|+..... .+. + -..+++.|..+|.+.+.+++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998873 56777777777777889999999999987721 011 1 2447889999999999999999
Q ss_pred HHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhhc
Q 043608 523 HLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLLA 578 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 578 (579)
..+++... -.+.+..++.++.-.|...|+++.|.+.|.+. ..+||.++-.++|+
T Consensus 476 ~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 476 DYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999986 45667889999999999999999999999988 67899988887764
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=4.7e-09 Score=90.95 Aligned_cols=448 Identities=12% Similarity=0.075 Sum_probs=257.2
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
+.-+....++..|+.+++.-... +-.....+-..+...+.+.|++++|...+.-+.... .++...+..+..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 45567788999999999976643 322222344445556778999999999999888755 6677777777777777899
Q ss_pred hhhHHHhhcCCCCCCeeehh-HHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHH
Q 043608 86 LEDARMGFDKMPQRNVVSWT-AMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIK 164 (579)
Q Consensus 86 ~~~A~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 164 (579)
+.+|..+-...++ ....+ .|.....+.++-++...+-+.+... ..--.+|.......-.+++|++++.....
T Consensus 107 Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998877654 23333 3444455667766665555554332 12233444444445568899999998876
Q ss_pred hccCCChhHHHH-HHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 165 SEHGSHLIAQNA-LIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 165 ~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.+ |.....|. +.-+|.+..-++-+.++++--.+ .++.+-|..+....+.=+-..|.+-.+++.+.+- + .
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~-~-~--- 252 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID-Q-E--- 252 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc-c-c---
Confidence 54 23223332 44567788888877777654432 2445556555555554333444444555544431 0 0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccch
Q 043608 241 FGSVFSACSNFARILFNEIDSPDLASWNALIAGVASH-----SNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL 315 (579)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 315 (579)
| ..+.-++++ +.-+.|++++-.+.+. -|.. -..++-.+.+.+++
T Consensus 253 --------------------------~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 253 --------------------------Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDV 301 (557)
T ss_pred --------------------------c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccH
Confidence 0 011111111 2224444444333321 1211 11223334455555
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHH-----HHhcCChHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHHHHH
Q 043608 316 YQGMQVHSYIIKMGFDSNVPVCNAILTM-----YAKCSVLCNALLVFKELGKN----ADSVSWNSIIAACLQHNQAEELF 386 (579)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~ 386 (579)
++|..+.+++.-. .|...+...++.+ ......+.-|...|+-.|.. .++..-..+.+.+.-..++++++
T Consensus 302 qeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 302 QEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred HHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 5555444432210 1111111111111 11112244455555555332 12333455666666667788888
Q ss_pred HHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC
Q 043608 387 RLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD 466 (579)
Q Consensus 387 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 466 (579)
..++....--...|... ..+.++.+..|++.+|+++|-.+....++....-...|.++|.+++.++-|+.++-++..|.
T Consensus 380 ~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~ 458 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS 458 (557)
T ss_pred HHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch
Confidence 88877766533333333 34677888888888888888777655555444445567788889999999998888877654
Q ss_pred h-hh-HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHH
Q 043608 467 V-VS-WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTL 505 (579)
Q Consensus 467 ~-~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 505 (579)
. .+ ...+...|-+.+.+--|.+.|+.+... .|++..|
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 3 22 334456677888888888888887765 4555555
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.5e-08 Score=93.97 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=112.0
Q ss_pred CChHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 348 SVLCNALLVFKELGKNADSVSWNSIIAACLQ--HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
+..+.+.++...++.......+.+++....+ ...+.++..++....+....-........+......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455566665555443223344444444322 22466777777776665322223455566677788899999999888
Q ss_pred --------HHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------CChhhHHHH----HHHHHhcCCcHHHH
Q 043608 426 --------YITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN------PDVVSWSSL----ILGYAQFGCGDEAL 487 (579)
Q Consensus 426 --------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l----~~~~~~~~~~~~a~ 487 (579)
.+.+.+. .+.+...++..+.+.++-+.|..++.+..+ +......++ ...-.+.|+-++|.
T Consensus 401 ~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 4444433 445666777778888887777777776652 333333333 33345779999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 488 KLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 488 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
.+++++.+.+ ++|..+...++.+|++. |.+.|..+-..+
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999863 66788888888888874 667777665543
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.4e-08 Score=92.69 Aligned_cols=446 Identities=12% Similarity=0.023 Sum_probs=261.3
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDA 190 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 190 (579)
+...|++++|.+...++...+ +-+...+..=+-++.+.+.+++|+.+.+.-.. ...+..-+-.=.-+..+.++.++|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHH
Confidence 445566666666666666543 33344455555555566666666643322110 000000001112334467888888
Q ss_pred HHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHH
Q 043608 191 RNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNAL 270 (579)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 270 (579)
+..++...+.+..+-..-.+.+.+.|++++|+++|+.+.+.+....+......++.+.....-...+..+.....+|..+
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 88888665556666777778888999999999999999888764555666666666655543335555554445566554
Q ss_pred H---HHHHcCCChHHHHHHHHHHHhCC-------------CCCChHHH-HHHHHHhhcccchhhHHHHHHHHHHcCCCCC
Q 043608 271 I---AGVASHSNANEAMSLFSEMRDRE-------------LLPDGLTV-HSLLCACIGRLTLYQGMQVHSYIIKMGFDSN 333 (579)
Q Consensus 271 i---~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 333 (579)
. ..+...|++.+|+++++...+-| +.-+..+. ..+.-.+-..|+-++|..++...++.+.. |
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D 257 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-D 257 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-C
Confidence 4 45567899999999998883211 11111111 22333456789999999999999988743 3
Q ss_pred chhHHHHHH---HHHhcCCh-H-HHHHHHHHcCCC-------------CChhhHH-HHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 334 VPVCNAILT---MYAKCSVL-C-NALLVFKELGKN-------------ADSVSWN-SIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 334 ~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~-------------~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
........+ +.....++ + .++..++..... -..+..| .++..|. +..+.+.++-....
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp- 334 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP- 334 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC-
Confidence 322222221 22221111 1 223333332111 0111111 2222222 22233333222211
Q ss_pred CCCCCcHhHHHHHHHHHhcc--CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHh--------hCCC
Q 043608 395 SQIKPDHITFNDVMGACAKM--ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFN--------FMEN 464 (579)
Q Consensus 395 ~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~ 464 (579)
+..| ...+..++..+.+. ..+..+.+++....+....-...+.-.+++.....|+++.|.+++. .+.+
T Consensus 335 -~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 335 -GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred -ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 1122 23444555444332 2466777777776665444445666677888899999999999998 3332
Q ss_pred --CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC--CCCChh----HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 465 --PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLG--VSPNLV----TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 465 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
..+.+...+...+.+.++.+.|..++.+....- -.+... ++.-++..-.+.|.-++|...++++.+ -.++
T Consensus 413 ~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~ 490 (652)
T KOG2376|consen 413 AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPN 490 (652)
T ss_pred hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCc
Confidence 334555667777888888888888887766421 012222 344444445577999999999999997 4577
Q ss_pred CcchhHHHHHHHHhcCChhHHHHHHHhhcCCC
Q 043608 537 TREHCSCVVDLLARAGCVHEAEDFINQMACDA 568 (579)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (579)
|..+...++.+|.+.. .+.|..+-.+++..+
T Consensus 491 d~~~l~~lV~a~~~~d-~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARLD-PEKAESLSKKLPPLK 521 (652)
T ss_pred hHHHHHHHHHHHHhcC-HHHHHHHhhcCCCcc
Confidence 8889999999998764 899999988885333
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.6e-12 Score=81.16 Aligned_cols=50 Identities=38% Similarity=0.634 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH 514 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 514 (579)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=4.5e-12 Score=80.10 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc
Q 043608 364 ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK 413 (579)
Q Consensus 364 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 413 (579)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.3e-07 Score=93.07 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=122.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
.+..|+.+..+-.+.|...+|.+-|-+ ..|+..|.-++..+.+.|.+++...++...++..-.|.+. +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 345678888888888888888776644 2467789999999999999999999998888776665544 57888
Q ss_pred HHHHcCCHHHHHHHHhhCCC-----------------------CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 445 IYIKCGSLGSARKLFNFMEN-----------------------PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+|++.+++.+-++++..--. .++..|..|...+...|+++.|...-++. -+
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 99999998887766543110 23444555666666666666666554432 24
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
..||.-+-.+|...+.+.-| +|... ++....+-...|+..|...|-+++-..+++.
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 55777777777776655443 23322 3344455667778888888888887777664
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.32 E-value=2.8e-08 Score=93.28 Aligned_cols=443 Identities=11% Similarity=0.048 Sum_probs=272.0
Q ss_pred hcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHH
Q 043608 11 KQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDAR 90 (579)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 90 (579)
..+++...+++.+.+... .+-+..|.....-.+...|+.++|......-++.+ ..+.++|..+.-.+-...++++|+
T Consensus 19 E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHH
Confidence 356777788888877773 44455565555555667788888888888777655 445567777666666667888888
Q ss_pred HhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc
Q 043608 91 MGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH 167 (579)
Q Consensus 91 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (579)
+.|..... .|...|.-+--.-++.++++.....-.++.+.. +-....|.....+.--.|+...|..+++...+...
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88877652 344555555544556677777777777766641 22345566777777778888899998888877653
Q ss_pred -CCChhHHHHH------HHHHhcCCCHHHHHHHhcccCCC--cH-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 043608 168 -GSHLIAQNAL------IAMYTKFDRILDARNVFSGIARK--DV-TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPN 237 (579)
Q Consensus 168 -~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 237 (579)
.|+...+... .....+.|..+.|.+.+...... |- ..-.+-...+.+.+++++|..++..++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r------ 248 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER------ 248 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh------
Confidence 4554444332 23455678888888877665543 22 23345566778889999999999999887
Q ss_pred hHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH-HHHHHHcC-CChHHHHHHHHHHHhCCCCCChHHHHH-HHHHhhcccc
Q 043608 238 EFIFGSVFSACSNFARILFNEIDSPDLASWNA-LIAGVASH-SNANEAMSLFSEMRDRELLPDGLTVHS-LLCACIGRLT 314 (579)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~ 314 (579)
.||...|+. +..++.+. +..+....+|....+. .|....... -+.......-
T Consensus 249 -----------------------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 249 -----------------------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred -----------------------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchh
Confidence 344444444 33444322 2333333555555443 221111111 1111112223
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH----HHHHc-------------CCCCChhhHH--HHHHH
Q 043608 315 LYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL----VFKEL-------------GKNADSVSWN--SIIAA 375 (579)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~-------------~~~~~~~~~~--~l~~~ 375 (579)
.+....++....+.|+++ ++..+...|-.-...+-..+ +...+ ..+|....|. .++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 344556666677777654 33333333322221111111 11111 1245665554 46677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHh-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 043608 376 CLQHNQAEELFRLFSRMLASQIKPDHI-TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGS 454 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 454 (579)
+-+.|+++.|...++...++ .|+.. -|..=.+.+...|++++|..++++..+.+ .+|...-..-.....+.++.++
T Consensus 381 ~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHH
Confidence 88899999999999988776 56644 34444577888999999999999988765 3455555566777788899999
Q ss_pred HHHHHhhCCCCChh----------hHHHH--HHHHHhcCCcHHHHHHHHHHH
Q 043608 455 ARKLFNFMENPDVV----------SWSSL--ILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 455 A~~~~~~~~~~~~~----------~~~~l--~~~~~~~~~~~~a~~~~~~m~ 494 (579)
|.++.....+.+.. .|-.+ ..+|.+.|++..|++-|....
T Consensus 458 A~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 458 AEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 99988877643211 22222 345677777777766555543
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=4.6e-08 Score=94.24 Aligned_cols=281 Identities=13% Similarity=0.170 Sum_probs=187.7
Q ss_pred HHHhcCCCHHHHHHHhcccCCC--c-HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHH
Q 043608 179 AMYTKFDRILDARNVFSGIARK--D-VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARIL 255 (579)
Q Consensus 179 ~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~ 255 (579)
..+...|++++|++.++.-... | ..........+.+.|+.++|..+++.+++.+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----------------------- 68 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----------------------- 68 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------------------
Confidence 3456678888888888665443 3 3455667788888999999999999998885
Q ss_pred hhcCCCCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccch-hhHHHHHHHHHHcC
Q 043608 256 FNEIDSPDLASWNALIAGVAS-----HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL-YQGMQVHSYIIKMG 329 (579)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~ 329 (579)
+.|..-|..+..+..- ..+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|
T Consensus 69 -----Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 69 -----PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG 141 (517)
T ss_pred -----CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 3344444445454422 23567778888888765 35555544444333332333 24445666777777
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHc-----------------CCCCChhhH--HHHHHHHHhcCCHHHHHHHHH
Q 043608 330 FDSNVPVCNAILTMYAKCSVLCNALLVFKEL-----------------GKNADSVSW--NSIIAACLQHNQAEELFRLFS 390 (579)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~ 390 (579)
+++ +++.+-..|.......-..+++... ..+|+...| ..+...|...|++++|++.++
T Consensus 142 vPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 142 VPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred Cch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 543 5666666666554444444444432 122444334 555667788999999999999
Q ss_pred HHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh-
Q 043608 391 RMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVV- 468 (579)
Q Consensus 391 ~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 468 (579)
+.++. .|+ +..|..-...+-+.|++.+|.+.++..+..... |..+-+-....+.++|+.++|.+++....+++..
T Consensus 219 ~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 98887 455 556777778888999999999999998877643 6667777788888999999999998888765421
Q ss_pred ---------hH--HHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 469 ---------SW--SSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 469 ---------~~--~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
.| .....+|.+.|++..|++.|....+
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 2335678888888888877666543
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3e-09 Score=94.61 Aligned_cols=193 Identities=14% Similarity=0.056 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIY 446 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (579)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 345555566666666666666666665542 22344555566666666677777776666665432 2345555666667
Q ss_pred HHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHH
Q 043608 447 IKCGSLGSARKLFNFMEN-----PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 521 (579)
...|++++|.+.++...+ .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776653 123455666777788888888888888887753 22455677778888888888888
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...+++.... .+.+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888764 2334556666777788888888888887766
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3e-09 Score=94.57 Aligned_cols=196 Identities=14% Similarity=0.041 Sum_probs=154.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456677778888889999998888875 2222 45677788888889999999999999888764 3355667777888
Q ss_pred HhccCChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHH
Q 043608 411 CAKMASLEMVTQLHCYITKTGL-AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a 486 (579)
+...|++++|.+.++...+... ......+..+..++...|++++|...+++..+ | +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 8889999999999998886432 22345667788889999999999999988763 3 456788888999999999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
...+++..+. .+.+...+..+...+...|+.++|..+++.+..
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999886 344566777788888899999999999888765
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=6.1e-10 Score=111.06 Aligned_cols=246 Identities=12% Similarity=-0.058 Sum_probs=151.4
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH---------ccCChhhHHHhhcCCCC--C-CeeehhHHhhhhhcCC
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG---------KCGSLEDARMGFDKMPQ--R-NVVSWTAMIAGCSQNY 115 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 115 (579)
.++.++|.+.|++..+.. +.+...+..+..++. ..+++++|...+++..+ | +...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 356788888888888765 444555555554433 22346778888777664 3 4556666767777788
Q ss_pred ChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhc
Q 043608 116 QENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFS 195 (579)
Q Consensus 116 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 195 (579)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+..+.+ ...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHH
Confidence 8888888888887763 3334566777777888888888888888887765432 2223334444566788888888887
Q ss_pred ccCC---C-cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 043608 196 GIAR---K-DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALI 271 (579)
Q Consensus 196 ~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li 271 (579)
+... + +...+..+..++...|+.++|.+.++++.... +.+....+.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~----------------------------~~~~~~~~~l~ 482 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE----------------------------ITGLIAVNLLY 482 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc----------------------------chhHHHHHHHH
Confidence 6542 2 34556677777888888888888887765442 22334445555
Q ss_pred HHHHcCCChHHHHHHHHHHHhC-CCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 272 AGVASHSNANEAMSLFSEMRDR-ELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
..+...| ++|...++.+.+. ...|.......++.+ -.|+.+.+... +.+.+.+
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLV--AHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHH--HHhhhHHHHHH-HHhhccc
Confidence 5666666 4666666665543 223333333333333 33444444433 5555543
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=1.9e-07 Score=87.91 Aligned_cols=450 Identities=11% Similarity=0.029 Sum_probs=258.1
Q ss_pred HhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhH
Q 043608 44 ACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDA 120 (579)
Q Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 120 (579)
-|...+++...+...+.+++.. +....+.....-.+...|+-++|.+....-.+ .+.+.|+.+.-.+-...++++|
T Consensus 16 k~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 3556678888888888888743 44555555444555678999999998877665 4567899988888888999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC-
Q 043608 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR- 199 (579)
Q Consensus 121 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 199 (579)
+++|+.....+ +-|...+.-+.-.-++.|+++.....-.+..+.. +.....|..+..++.-.|+...|..++++..+
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998864 3344455444444445566666655555555432 22344556666666667777777666655432
Q ss_pred ----CcHhhHHHH------HHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhH-H
Q 043608 200 ----KDVTSWGSM------IAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASW-N 268 (579)
Q Consensus 200 ----~~~~~~~~l------~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~ 268 (579)
++...|... .....+.|.+++|++.+..-...- -|-..+ .
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-----------------------------~Dkla~~e 223 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-----------------------------VDKLAFEE 223 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-----------------------------HHHHHHhh
Confidence 222222221 233455666666666665543221 122222 2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhh-ccc-chhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACI-GRL-TLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK 346 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (579)
.-...+.+.++.++|..++..+... .||..-|...+..+. +.. ..+....+|....+.- |-...-..+--....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhC
Confidence 3446677889999999999999876 688777766655444 232 2333335555544331 111110001000111
Q ss_pred cCChHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCcH--hHHHHHHH
Q 043608 347 CSVLCNA-LLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRML----ASQ----------IKPDH--ITFNDVMG 409 (579)
Q Consensus 347 ~~~~~~a-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~----------~~p~~--~~~~~l~~ 409 (579)
..++... -+++...-.+.=+..+..+.+.|-.....+-..++.-.+. ..| -+|.. .|+..++.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 1222222 2222222111011223333333322221111111111111 111 13443 34556778
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHH
Q 043608 410 ACAKMASLEMVTQLHCYITKTGLAFD-VFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDE 485 (579)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 485 (579)
.+-..|+++.|..+++..... .|+ +..|..=.+.+...|++++|...+++..+ +|...-.--..-..+.++.++
T Consensus 380 h~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHH
Confidence 888999999999999887754 344 33444445778899999999999998875 554444445556678899999
Q ss_pred HHHHHHHHHhCCCCC-----Chh-HHHHH--HHHhhccCchHHHHHHHHHHHHh
Q 043608 486 ALKLFTRMRSLGVSP-----NLV-TLVGV--LTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 486 a~~~~~~m~~~~~~p-----~~~-~~~~l--~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
|.++.......|... +.. .|-.+ ..+|.++|++..|++-|..+.+.
T Consensus 458 A~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 458 AEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 999998888776411 111 22222 23577888888888766666543
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=1.3e-08 Score=83.23 Aligned_cols=206 Identities=13% Similarity=0.023 Sum_probs=172.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI 447 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (579)
+...+.-+|...|+...|..-+++..+.. +.+..++..+...|.+.|..+.|.+.|++..+.... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 35567778999999999999999998873 334668888889999999999999999999876533 6788899999999
Q ss_pred HcCCHHHHHHHHhhCCC-CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHH
Q 043608 448 KCGSLGSARKLFNFMEN-PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 522 (579)
..|++++|...|+.... |+ ..+|..+..+..+.|+++.|...|++..+.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999998874 43 4678888888899999999999999999863 223567888999999999999999
Q ss_pred HHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhhc
Q 043608 523 HLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLLA 578 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 578 (579)
.+++..... ..++..+....++.-.+.||.+.|.++=.++ ..-|.+..|.+.+.
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f~~ 248 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTFLA 248 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhHhc
Confidence 999999875 3489999999999999999999999887777 34577777766553
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.2e-09 Score=93.39 Aligned_cols=222 Identities=14% Similarity=0.073 Sum_probs=157.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHH-HHHHHHHhccC
Q 043608 338 NAILTMYAKCSVLCNALLVFKEL-GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITF-NDVMGACAKMA 415 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~ 415 (579)
+.+.++|.+.|.+.+|.+.++.. ...|.+.+|-.+-+.|.+.+++..|+.++.+-.+. .|-.+|| ..+...+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 45667777888888888777764 55667777877888888888888888888777665 3444443 34556667777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHH
Q 043608 416 SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTR 492 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 492 (579)
+.++|.++++...+.. +.++....++...|.-.++.+.|++++.++.+ .++..|+.+.-+|.-.+++|-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 7888888887777653 23555556666667777788888888877764 5666777777777777888888888888
Q ss_pred HHhCCCCCCh--hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 493 MRSLGVSPNL--VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 493 m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
....--.|+. ..|-.+.......||+..|.+-|+-.... -....+.++.|.-.-.+.|++++|..+++..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 7765444543 35666777777788888888888877642 2334556777777777888888888888776
No 74
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=3.5e-06 Score=83.54 Aligned_cols=435 Identities=15% Similarity=0.149 Sum_probs=211.4
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHC--CCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHH
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQS--GVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (579)
+..+.+.|.++|-..+|++.+..+..- .+..+...=-..+-.+...-.++.+.++++.|...++..+..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 455666677788888888776665321 000000000111222333445777888888888877777776666666666
Q ss_pred hcCCCHHHHHHHhcccCC---------------CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----------
Q 043608 182 TKFDRILDARNVFSGIAR---------------KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQP---------- 236 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p---------- 236 (579)
...=..+..+++|+.... .|+...--.|.+.++.|++.+..++.++- +++.|
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres---n~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES---NCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc---ccCCHHHHHHHHHhc
Confidence 666666667777766543 24555566778888888887777766542 11111
Q ss_pred ------------ChHhH--HHHHHHHHHHHH----HHhhcCCC---C-------Ch----hh-------------HHHHH
Q 043608 237 ------------NEFIF--GSVFSACSNFAR----ILFNEIDS---P-------DL----AS-------------WNALI 271 (579)
Q Consensus 237 ------------~~~~~--~~~l~~~~~~~~----~~~~~~~~---~-------~~----~~-------------~~~li 271 (579)
|...+ ..++-.+.+... ...++..+ | |. .. -+.|.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 11111 111111111111 11111111 0 00 00 11122
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc-hhhHHH---HH-----HHH-HHc-----------CC
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT-LYQGMQ---VH-----SYI-IKM-----------GF 330 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~---~~-----~~~-~~~-----------~~ 330 (579)
.-.-+.++..--..+++.....| .-|..+++.+...|...++ ++.-++ .| ... .++ |.
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 22233344444455555555555 3466677777766654432 221110 01 110 110 10
Q ss_pred --------CCCchhHHHHHHHHHhcCChH---HHH--------HHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHH
Q 043608 331 --------DSNVPVCNAILTMYAKCSVLC---NAL--------LVFKEL-----GKNADSVSWNSIIAACLQHNQAEELF 386 (579)
Q Consensus 331 --------~~~~~~~~~l~~~~~~~~~~~---~a~--------~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~ 386 (579)
......|....+.+.+..|.+ +++ .+.+.. +...|+...+.-+.++...+-..+..
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 001112222333333333322 111 111221 33335555566667777777777777
Q ss_pred HHHHHHHHCCC--CCcHhHHHHHH---------------------------HHHhccCChHHHHHHHHHHHHcCCCCchh
Q 043608 387 RLFSRMLASQI--KPDHITFNDVM---------------------------GACAKMASLEMVTQLHCYITKTGLAFDVF 437 (579)
Q Consensus 387 ~~~~~m~~~~~--~p~~~~~~~l~---------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 437 (579)
++++++.-..- .-+...-+.++ ..+...+-+++|..+|++. ..+..
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~ 1079 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVS 1079 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cccHH
Confidence 77776643221 11111111121 1222333344444444432 12222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGL 517 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 517 (579)
..+.|++ ..+.+++|.++-++..+| ..|+.+..+-.+.|.+.+|++-|-+. .|+..|.-+++.+.+.|.
T Consensus 1080 A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1080 AIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCc
Confidence 3333322 234455555555544444 35777777777777777777655332 355677777788888888
Q ss_pred hHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHH
Q 043608 518 VEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
+++-.+++...+++ .-.|..++ .|+-+|++.|++.+-.+++
T Consensus 1149 ~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 88877777766665 44444443 5667777777766665554
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.15 E-value=3.3e-07 Score=87.47 Aligned_cols=369 Identities=13% Similarity=0.104 Sum_probs=210.5
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDA 190 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 190 (579)
......|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+ ...++-.|.+|.+.|+|++|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e---------~~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTE---------ADLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHh---------cchhHHHHHHHhccccHHHH
Confidence 445566777777777666542 2334566667777777777777777643 22344566777777777777
Q ss_pred HHHhcccCCC--cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHH
Q 043608 191 RNVFSGIARK--DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWN 268 (579)
Q Consensus 191 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 268 (579)
.++-++...| ....|-+-..-+-+.|++.+|.+++-.+. .|+.
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-------------------------------~p~~---- 855 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-------------------------------EPDK---- 855 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-------------------------------CchH----
Confidence 7777766655 33456555566666777777766654332 3432
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
.|..|-+.|..+..+++...-... .-..|...+..-+-..|++..|.+-|-+.. -|.+.+++|...+
T Consensus 856 -aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 -AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASE 922 (1636)
T ss_pred -HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhh
Confidence 466777888888888777654322 123445555666677788888876654433 2566778888888
Q ss_pred ChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 349 VLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
-+++|.++-+.-+-. |..-- +.-.+++.=.-+.|.+++++. | ....-+...+..+.++-|.++-+...
T Consensus 923 lw~dayriaktegg~-n~~k~--v~flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~ 990 (1636)
T KOG3616|consen 923 LWEDAYRIAKTEGGA-NAEKH--VAFLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAA 990 (1636)
T ss_pred hHHHHHHHHhccccc-cHHHH--HHHHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhh
Confidence 888888887765433 32222 222233333345666666542 1 12223344566667777776655544
Q ss_pred HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCCh--hhHHHHH-----HHHHhcC-CcHHHHHHHHH--------
Q 043608 429 KTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDV--VSWSSLI-----LGYAQFG-CGDEALKLFTR-------- 492 (579)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~-----~~~~~~~-~~~~a~~~~~~-------- 492 (579)
+... |.+ .-.+...+...|++++|-+.+-+..+.+. .+|...+ .-+.+.| ++++|..+|-.
T Consensus 991 k~k~-~~v--hlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~ae 1067 (1636)
T KOG3616|consen 991 KDKM-GEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAE 1067 (1636)
T ss_pred hccC-ccc--hhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHH
Confidence 4321 222 22233345677888888777766654322 2222111 1123333 34444444311
Q ss_pred -HHhCCCCCC--hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 493 -MRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 493 -m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+. ..|+ +..|..-.++....|++.+|..++-+.. +|+. .++.|...+-|..|+++-+..
T Consensus 1068 rvae~-h~~~~l~dv~tgqar~aiee~d~~kae~fllran-----kp~i-----~l~yf~e~~lw~dalri~kdy 1131 (1636)
T KOG3616|consen 1068 RVAEA-HCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN-----KPDI-----ALNYFIEAELWPDALRIAKDY 1131 (1636)
T ss_pred HHHHh-hChhhhHHHHhhhhhccccccchhhhhhheeecC-----CCch-----HHHHHHHhccChHHHHHHHhh
Confidence 1111 1233 2345555666677778877777654332 4443 456677777888887776655
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.15 E-value=2.9e-08 Score=94.32 Aligned_cols=65 Identities=20% Similarity=0.138 Sum_probs=43.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 043608 207 SMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSL 286 (579)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 286 (579)
.+...|...+++++|..+|+++...- +..+-...+.-..+++.|..+|.+.|++++|...
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~--------------------e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~ 305 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIR--------------------EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEY 305 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHH--------------------HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHH
Confidence 46667788888888888888876431 1111111123345677888889999999988888
Q ss_pred HHHHH
Q 043608 287 FSEMR 291 (579)
Q Consensus 287 ~~~m~ 291 (579)
++...
T Consensus 306 ~e~Al 310 (508)
T KOG1840|consen 306 CERAL 310 (508)
T ss_pred HHHHH
Confidence 87654
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=2.1e-08 Score=95.28 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC-------CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC----C--CC-C
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFMEN-------PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLG----V--SP-N 501 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~--~p-~ 501 (579)
+.+...++..+++++|..+++...+ ++ ..+++.|...|.+.|++++|.+++++++... - .+ .
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 3444445555555555555443331 11 2345666666666666666666666654321 1 11 1
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhh-CCCC---C-cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEY-GIIP---T-REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...++.+...|.+.+.+++|.++|.+...-. -+.| + ..+|..|...|.+.|++++|.++.++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3355666666666666666666665543210 1112 1 235666666677777777776666555
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.2e-06 Score=74.70 Aligned_cols=415 Identities=11% Similarity=0.009 Sum_probs=240.5
Q ss_pred HhhcchhhhhhhhHHHHHHHhC-------------------CCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeeh
Q 043608 44 ACSSLRSLQLGRKVHDHILLSK-------------------CQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSW 104 (579)
Q Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 104 (579)
...+.+.+..|.+-|....... ...+...-...+.+|-..++-+.|...+.+.+..-...-
T Consensus 52 ~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~ 131 (564)
T KOG1174|consen 52 ANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPR 131 (564)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchh
Confidence 3345566777777776655322 122344556677788888888899988888875333333
Q ss_pred hHH-hhhhhcCC-ChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHh
Q 043608 105 TAM-IAGCSQNY-QENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYT 182 (579)
Q Consensus 105 ~~l-~~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (579)
+.| +.-+-+.| +-.++.--+...+..- + .-...|.+..+.+ ...+...-..|-....+|........+.+++
T Consensus 132 inlMla~l~~~g~r~~~~vl~ykevvrec-p----~aL~~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~A 205 (564)
T KOG1174|consen 132 INLMLARLQHHGSRHKEAVLAYKEVIREC-P----MALQVIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALA 205 (564)
T ss_pred HHHHHHHHHhccccccHHHHhhhHHHHhc-c----hHHHHHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHH
Confidence 333 33332222 2222222222221110 0 0011111111110 0001111111222223344444444444433
Q ss_pred c--CCCHHHHHHHhccc-----CCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHH
Q 043608 183 K--FDRILDARNVFSGI-----ARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARIL 255 (579)
Q Consensus 183 ~--~g~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~ 255 (579)
. .++-..+...+-.. ...|+.....+...+...|+.++|...|+...-...
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp---------------------- 263 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP---------------------- 263 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh----------------------
Confidence 3 33333333333222 123677777888888888888888888887764421
Q ss_pred hhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCch
Q 043608 256 FNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVP 335 (579)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (579)
-++.....-.-.+.+.|+.+....+...+.... .-+...|..-.......++++.|+.+-++.++.+ +.+..
T Consensus 264 ------y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~ 335 (564)
T KOG1174|consen 264 ------DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHE 335 (564)
T ss_pred ------hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccch
Confidence 111112222233456677777777776665431 1122222222333445677888888877777665 22444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH-HHHh
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL-GK-NADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM-GACA 412 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~-~~~~ 412 (579)
.+-.-...+...+++++|.-.|+.. .. +-+...|.-++.+|...|.+.+|.-+-+...+. ++.+..+...+. ..|.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~ 414 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF 414 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec
Confidence 5555556778889999999888876 22 236778999999999999999988777765544 345566665552 3332
Q ss_pred -ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcHHHHHH
Q 043608 413 -KMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME--NPDVVSWSSLILGYAQFGCGDEALKL 489 (579)
Q Consensus 413 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 489 (579)
...--++|..++++..+..+. -....+.+.+.+...|..+.+..+++... .||....+.|...+...+.+++|.+.
T Consensus 415 ~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred cCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 333457788888776654322 23456677788888999999999998876 48888899999999999999999999
Q ss_pred HHHHHhC
Q 043608 490 FTRMRSL 496 (579)
Q Consensus 490 ~~~m~~~ 496 (579)
|......
T Consensus 494 y~~ALr~ 500 (564)
T KOG1174|consen 494 YYKALRQ 500 (564)
T ss_pred HHHHHhc
Confidence 9888874
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=3.9e-08 Score=98.25 Aligned_cols=209 Identities=11% Similarity=-0.075 Sum_probs=135.8
Q ss_pred CChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 348 SVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 348 ~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
+++++|...+++. ...| +...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3467777777665 2222 55567777777777888888888888887763 3335566677777888888888888888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 426 YITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+..+.+..+ ...+..++..+...|++++|...+++..+ |+ ...+..+..++...|++++|...++++... .|+
T Consensus 397 ~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~ 473 (553)
T PRK12370 397 ECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EIT 473 (553)
T ss_pred HHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cch
Confidence 887765432 22233344445667888888888877642 33 344666777788888889998888887654 444
Q ss_pred hh-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 502 LV-TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 502 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
.. ..+.+...+...| +.|...++.+.+.....+..... +-..|.-.|+.+.+..+ +++.
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhh
Confidence 33 4445555666666 47777777777654444433333 44445556776777666 7774
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.13 E-value=8.1e-08 Score=92.58 Aligned_cols=285 Identities=12% Similarity=0.067 Sum_probs=198.1
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc---
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDG-LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC--- 347 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 347 (579)
..+...|++++|++.++.-... .+|. .........+.+.|+.++|..++..+++.+. .+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 4567889999999999875543 4554 4455667788899999999999999999973 3555566666665332
Q ss_pred --CChHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHH
Q 043608 348 --SVLCNALLVFKELGKN-ADSVSWNSIIAACLQHNQAE-ELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQL 423 (579)
Q Consensus 348 --~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 423 (579)
.+.+...++++++... |.......+.-.+.....+. .+...+..+...|+++ +|..+-..|....+.+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2467778888877222 33333333322222222232 3555667777888664 455555556655555556666
Q ss_pred HHHHHHc----C----------CCCch--hHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcH
Q 043608 424 HCYITKT----G----------LAFDV--FVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 424 ~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~ 484 (579)
+...... + -.|+. .++.-+.+.|-..|++++|++++++..+ |. +..|..-.+.+...|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 6554421 1 12333 3456678889999999999999998874 54 556777888999999999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchh--------HHHHHHHHhcCChhH
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHC--------SCVVDLLARAGCVHE 556 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~ 556 (579)
+|.+.++..+.... -|...=+-.+..+.+.|++++|.+++..+.+. +..|....+ .....+|.+.|++..
T Consensus 246 ~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 246 EAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999998652 35556666777788999999999999999876 544433222 445788999999999
Q ss_pred HHHHHHhh
Q 043608 557 AEDFINQM 564 (579)
Q Consensus 557 A~~~~~~~ 564 (579)
|+..+..+
T Consensus 324 ALk~~~~v 331 (517)
T PF12569_consen 324 ALKRFHAV 331 (517)
T ss_pred HHHHHHHH
Confidence 99877665
No 81
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1e-06 Score=85.27 Aligned_cols=229 Identities=12% Similarity=0.074 Sum_probs=129.5
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhC---------CCCChhHHHHHHHH
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSK---------CQPDVVLQNHILNM 79 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~ 79 (579)
|..-|+.+.|.+-.+.+.. ...|..+.+.|.+.++++-|.-++-.|.... ..++ .+-....-.
T Consensus 738 yvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4556777777777665543 4577777777877777776666555443211 1221 111122222
Q ss_pred HHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHH
Q 043608 80 YGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLH 159 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 159 (579)
-...|.+++|+.+|.+.++ |..|=..|-..|.|++|.++-+.--. +. =..||..-..-+-..++.+.|+++|
T Consensus 810 AieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHH
Confidence 2456888888888877665 44455556667788888777654221 11 1234555555555666777777766
Q ss_pred HHHHHhc-------------------cCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHH
Q 043608 160 AHVIKSE-------------------HGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELE 220 (579)
Q Consensus 160 ~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 220 (579)
++.-... -..|...|.-....+-..|+++.|+.++... ..|-++++..|-.|+.++
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchH
Confidence 5431110 0112222333333333445555555555432 234445555555555555
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 043608 221 ALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMR 291 (579)
Q Consensus 221 a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (579)
|-++-++ ..|..+...+.+.|-..|++.+|..+|...+
T Consensus 957 Aa~iA~e---------------------------------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 957 AARIAEE---------------------------------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHh---------------------------------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5555444 4566667778888988999999998887654
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=8.3e-09 Score=88.44 Aligned_cols=225 Identities=16% Similarity=0.102 Sum_probs=122.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHH
Q 043608 206 GSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMS 285 (579)
Q Consensus 206 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 285 (579)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-+.|.+..+++.|+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-----------------------------~~~~dTfllLskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-----------------------------FPHPDTFLLLSKVYQRIDQPERALL 277 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-----------------------------CCchhHHHHHHHHHHHhccHHHHHH
Confidence 56777888888888888888777665 5666777777788888888888888
Q ss_pred HHHHHHhCCCCCChHHHH-HHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCC
Q 043608 286 LFSEMRDRELLPDGLTVH-SLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNA 364 (579)
Q Consensus 286 ~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 364 (579)
++.+-.+. .|-..||. -+.+.+-..++.+.+.++|+...+.. +.+.....++...|.-.++++.|+..+
T Consensus 278 ~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryY------- 347 (478)
T KOG1129|consen 278 VIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYY------- 347 (478)
T ss_pred HHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHH-------
Confidence 88776654 55555543 33344455566666666666665543 223333334444444444455555544
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc--hhHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFD--VFVMNGL 442 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 442 (579)
+++.+.|+. +...|..+.-+|...+++|.++..|.+....--.|+ ..+|-.+
T Consensus 348 -------------------------RRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl 401 (478)
T KOG1129|consen 348 -------------------------RRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL 401 (478)
T ss_pred -------------------------HHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence 444444433 333444444444444444444444444443222222 2334444
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
.......|++.-|.+.|+-... .+...++.|.-.-.+.|++++|..++....+
T Consensus 402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 4444455555555555554442 2233455554444555666666666555544
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.10 E-value=3.4e-06 Score=81.44 Aligned_cols=271 Identities=13% Similarity=0.036 Sum_probs=136.2
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHc-CCCCCchhHHHHHHHHHhcCCh
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKM-GFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
--|...++.+.|.+..++..+.+-.-+...+..+.-.+...+++..|+.+.+...+. |. |......-++.-...++.
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~ 563 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDR 563 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccH
Confidence 345556788888888888888766667777777777788888888888888766543 21 111111122222334555
Q ss_pred HHHHHHHHHc----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHhHHHHHHHHHhccC---ChHHHH
Q 043608 351 CNALLVFKEL----GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS--QIKPDHITFNDVMGACAKMA---SLEMVT 421 (579)
Q Consensus 351 ~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~---~~~~a~ 421 (579)
++++.....+ ...+.+ -..++-....+....+.-. ...-...++..+..-....+ ..+..
T Consensus 564 e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 564 EEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred HHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 5555443322 000000 0011111111111111100 00111112222221111100 00000
Q ss_pred HHHHHHHHcCCCC--c------hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHHHHHH
Q 043608 422 QLHCYITKTGLAF--D------VFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEALKLF 490 (579)
Q Consensus 422 ~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 490 (579)
+.+....| + ...+......+.+.+..++|...+.+..+.+ ...|......+...|++++|.+.|
T Consensus 633 -----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 -----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred -----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 11111111 1 1233344455666666666666666655422 233444445556667777777777
Q ss_pred HHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHH--HHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 491 TRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLH--LYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 491 ~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..... +.|+ ......+...+.+.|+..-|.. ++..+.+. + +-+.+.|..|...+.+.|+.++|.+.|.-.
T Consensus 708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~-d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL-D-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-C-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 76665 3454 3466667777777776655555 66666643 1 224556777777777777777777777654
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1.9e-06 Score=83.53 Aligned_cols=348 Identities=12% Similarity=0.095 Sum_probs=198.3
Q ss_pred cCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-cHhhHHHHHHHHHhcCChHHHHHHH
Q 043608 147 SGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-DVTSWGSMIAAFSKLGYELEALCHF 225 (579)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 225 (579)
...|.+++|+.+|++-++.. .|-..|-..|.+++|.++-+.=.+- --.+|......+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 35567777777777665543 2333455667777777765442221 1235555666666677777777777
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 043608 226 NEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSL 305 (579)
Q Consensus 226 ~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 305 (579)
++.. ....-...+|.-.....+.+.+++. |...|.-....+-..|+.+.|+.+|...++ |..+
T Consensus 882 EK~~------~hafev~rmL~e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 882 EKAG------VHAFEVFRMLKEYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HhcC------ChHHHHHHHHHhChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 6542 1122222233332222333333333 335555566666778999999999987765 5567
Q ss_pred HHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHh-------
Q 043608 306 LCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQ------- 378 (579)
Q Consensus 306 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~------- 378 (579)
++..|-.|+.++|-++-++- | |....-.+.+.|-..|++.+|...|.+.. ++...|..|-.
T Consensus 945 VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHHHhcCHHHHH
Confidence 77778889998888876542 2 56667778888999999999988887641 22222222221
Q ss_pred ------cC--CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHH---------HHHH-HcCCCCchhHHH
Q 043608 379 ------HN--QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLH---------CYIT-KTGLAFDVFVMN 440 (579)
Q Consensus 379 ------~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~-~~~~~~~~~~~~ 440 (579)
.| +.-.|-..|++. |.. +...+..|-+.|.+.+|+++- +.+. +.....|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 11 222233333332 111 122233455666666665541 1111 233445677777
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHh-CCCCCC----hhHHHHHHHHhhcc
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRS-LGVSPN----LVTLVGVLTACSHV 515 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~----~~~~~~l~~~~~~~ 515 (579)
.-.+.++...++++|..++...++ |.-.+. +|+..+..-..++-+.|.- ++-.|+ ...+..+...|.++
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~-----~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLARE-----FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 777888888888888887765432 222222 3444444444444444431 111233 23567788889999
Q ss_pred CchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhH
Q 043608 516 GLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (579)
|++..|.+-|.+.-.+ ..-++++.+.||.++
T Consensus 1159 G~Yh~AtKKfTQAGdK----------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQAGDK----------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred cchHHHHHHHhhhhhH----------HHHHHHHHhcCCcce
Confidence 9999888877765432 124566667776553
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=3.5e-07 Score=77.68 Aligned_cols=418 Identities=13% Similarity=0.022 Sum_probs=231.7
Q ss_pred ehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHH-HHHHH
Q 043608 103 SWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNA-LIAMY 181 (579)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 181 (579)
-+++.+..+.+..+++.|++++..-.+.. +.+....+.+..+|....++..|...++++-... |...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 36667777778888888888888877763 2256667777778888888888888888876643 22222211 23445
Q ss_pred hcCCCHHHHHHHhcccCCCc-HhhHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhc
Q 043608 182 TKFDRILDARNVFSGIARKD-VTSWGSMIA--AFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNE 258 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 258 (579)
.+.+.+.+|+++...|.+.+ ...-..-+. .....+++..+..++++...
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---------------------------- 140 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---------------------------- 140 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC----------------------------
Confidence 56677777777777776531 111111111 22345666666666555432
Q ss_pred CCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHH
Q 043608 259 IDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCN 338 (579)
Q Consensus 259 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (579)
+.+..+.+.......+.|+++.|.+-|+...+-|---....|+..+ +..+.++.+.|.+...+++++|++..+..-.
T Consensus 141 --en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 141 --ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred --CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 2344455555566778999999999999887764333345555444 4567889999999999999998764443210
Q ss_pred HHHHHHHhcCChHHHHHHHHHcCCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHhHHHHHHHHH
Q 043608 339 AILTMYAKCSVLCNALLVFKELGKN------ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPDHITFNDVMGAC 411 (579)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~ 411 (579)
|...+... .+.++.+ .=+..+|.-...+.+.|+++.|.+-+-.|.-+. ...|+.|...+.-.-
T Consensus 218 ---------Gm~tegiD-vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n 287 (459)
T KOG4340|consen 218 ---------GMTTEGID-VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN 287 (459)
T ss_pred ---------cceeccCc-hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc
Confidence 00000000 0000000 011223433444567788888888777774322 344566655443221
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHH-hcCCcHH
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDVVSWSSLILGYA-QFGCGDE 485 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~-~~~~~~~ 485 (579)
..+++....+-+..+...+. ....+|..++-.||+..-++-|-.++.+-.. -+...|+. +.++. ..-..++
T Consensus 288 -~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEe 364 (459)
T KOG4340|consen 288 -MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEE 364 (459)
T ss_pred -ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHH
Confidence 23344445555555555543 4567888888889998888888888776543 23333433 33333 3345666
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH---HHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 486 ALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE---EGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
|.+-++.+... +.-.......-+.--...++-. .+++-+++..+. -..+.-.-.+.|++..|+..+.++|.
T Consensus 365 a~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-----YLPVlMa~AkiyW~~~Dy~~vEk~Fr 438 (459)
T KOG4340|consen 365 AFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-----YLPVLMAQAKIYWNLEDYPMVEKIFR 438 (459)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhccccccHHHHHHHH
Confidence 66665554332 0000011111111111111111 222222222221 11122334566788899999999987
Q ss_pred hh-cCCCChhHh
Q 043608 563 QM-ACDADIVVW 573 (579)
Q Consensus 563 ~~-~~~~~~~~~ 573 (579)
.- .+-.+..+|
T Consensus 439 ~SvefC~ehd~W 450 (459)
T KOG4340|consen 439 KSVEFCNDHDVW 450 (459)
T ss_pred HHHhhhccccee
Confidence 66 344455555
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=2.3e-06 Score=82.60 Aligned_cols=422 Identities=13% Similarity=0.064 Sum_probs=253.4
Q ss_pred CCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCccc-HH
Q 043608 65 KCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFT-FG 140 (579)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~-~~ 140 (579)
.+..++..|..+.-++.++|+++.+.+.|++... .....|+.+-..+...|.-..|+.+++......-.|+..+ +.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3566888888888888899999999999988774 3445688888888888888899999888765533344333 33
Q ss_pred HHHHHhc-CCCcchhHHHHHHHHHHh--cc--CCChhHHHHHHHHHhcCC-----------CHHHHHHHhcccCCC---c
Q 043608 141 SIIKACS-GLGSVCLGRQLHAHVIKS--EH--GSHLIAQNALIAMYTKFD-----------RILDARNVFSGIARK---D 201 (579)
Q Consensus 141 ~li~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~---~ 201 (579)
..-+.|. +.+..++++.+..+.... +. ......|..+.-+|...- ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3334443 557777888777777662 11 112233333333333211 122344555544322 3
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChH
Q 043608 202 VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNAN 281 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 281 (579)
+.+.--+.--|+..++++.|++..++..+.+. .-+...|..+.-.+...+++.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~---------------------------~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNR---------------------------GDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC---------------------------CccHHHHHHHHHHHhhhhhhH
Confidence 33333334446667788888888888877754 678889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChH-HHHHHHHHhhcccchhhHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 282 EAMSLFSEMRDRELLPDGL-TVHSLLCACIGRLTLYQGMQVHSYIIKMG-FDSNVPVCNAILTMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (579)
+|+.+.+...+. .|+.. ....-++.-...++.+++......+...= -.+. ....++-....+....
T Consensus 531 ~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~ 598 (799)
T KOG4162|consen 531 EALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAG 598 (799)
T ss_pred HHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------Hhhhhhhhhhhhhhcc
Confidence 999999877653 22211 01111111122455555554444433210 0000 0011112222233322
Q ss_pred cCC---C-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH--------hHHHHHHHHHhccCChHHHHHHHHH
Q 043608 360 LGK---N-AD-SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH--------ITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 360 ~~~---~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
++. . .+ +.++..+..-....+ +.+..-.. |....+.|+. ..|......+.+.+..++|...+.+
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 211 1 11 122222222221111 11110000 2222222221 2344555667777888888877777
Q ss_pred HHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC--CCC-hhhHHHHHHHHHhcCCcHHHHH--HHHHHHhCCCCCC
Q 043608 427 ITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME--NPD-VVSWSSLILGYAQFGCGDEALK--LFTRMRSLGVSPN 501 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~--~~~~m~~~~~~p~ 501 (579)
..+.. ......|......+...|+.++|.+.|.... +|+ +.+..++...+.+.|+..-|.. ++..+.+.+ +.+
T Consensus 676 a~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n 753 (799)
T KOG4162|consen 676 ASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLN 753 (799)
T ss_pred HHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCC
Confidence 66543 3466777777788888999999999998776 454 5667888889999998887777 899998865 346
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
...|-.+...+-+.|+.++|.+.|.....
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 77899999999999999999999988764
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2e-06 Score=73.22 Aligned_cols=342 Identities=13% Similarity=0.038 Sum_probs=188.5
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHH-HHHHHH
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNH-ILNMYG 81 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 81 (579)
.+++..+.+..++.+|++++..-.++ .+.+...+..|.-.|-...++..|-.+++++.... |...-|.. -.+.+-
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 45677778888888888888766654 33355566666667777888888888888876543 33333321 124444
Q ss_pred ccCChhhHHHhhcCCCC-CCeeehhHHhhh--hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHH
Q 043608 82 KCGSLEDARMGFDKMPQ-RNVVSWTAMIAG--CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQL 158 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 158 (579)
+.+.+.+|+++...|.. ++...-..-+.+ .-..+++..+..++++....| +..+.+.......+.|+.+.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 66778888887766664 222221222222 234566666776666655432 333333333334455666666666
Q ss_pred HHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCh
Q 043608 159 HAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNE 238 (579)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 238 (579)
|+...+-+--. ...+|+..+ +..+.|+.+.|++...++.++|+ +..+
T Consensus 167 FqaAlqvsGyq-------------------------------pllAYniAL-aHy~~~qyasALk~iSEIieRG~-r~HP 213 (459)
T KOG4340|consen 167 FQAALQVSGYQ-------------------------------PLLAYNLAL-AHYSSRQYASALKHISEIIERGI-RQHP 213 (459)
T ss_pred HHHHHhhcCCC-------------------------------chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh-hcCC
Confidence 65555432111 223444433 34456778888888888888775 2221
Q ss_pred HhHHHHHHHHHHHHHHHhhcCCCCC-------hhhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCChHHHHHHHHHhh
Q 043608 239 FIFGSVFSACSNFARILFNEIDSPD-------LASWNALIAGVASHSNANEAMSLFSEMRDR-ELLPDGLTVHSLLCACI 310 (579)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~ 310 (579)
..-..+..--.. .+.+..|- +..+|.-...+.+.|+.+.|.+-+-.|.-+ .-..|+.|...+.-. -
T Consensus 214 ElgIGm~tegiD-----vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n 287 (459)
T KOG4340|consen 214 ELGIGMTTEGID-----VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-N 287 (459)
T ss_pred ccCccceeccCc-----hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-c
Confidence 110000000000 00000000 122333344556789999999988888643 234566776554322 1
Q ss_pred cccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC----CChhhHHHHHHHHH-hcCCHHHH
Q 043608 311 GRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN----ADSVSWNSIIAACL-QHNQAEEL 385 (579)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~a 385 (579)
..+++....+-+..+.+.+. -...++..++-.||+..-++.|-.++-+-... .+...|+. +.++. ..-..+++
T Consensus 288 ~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea 365 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEA 365 (459)
T ss_pred ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHH
Confidence 23445556666666666654 45678888888999998888888887664222 13333433 33333 23455666
Q ss_pred HHHHHHH
Q 043608 386 FRLFSRM 392 (579)
Q Consensus 386 ~~~~~~m 392 (579)
++-++.+
T Consensus 366 ~KKL~~L 372 (459)
T KOG4340|consen 366 FKKLDGL 372 (459)
T ss_pred HHHHHHH
Confidence 5555443
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.97 E-value=6.5e-08 Score=88.22 Aligned_cols=218 Identities=11% Similarity=-0.012 Sum_probs=156.3
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCCCCC--cccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNIRIR--PSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
.....++.+.++.-+..+.......|+ ...|..+...+...|+.++|...|++.++.. +.++..|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 344456777888888888864233332 2357777778889999999999999999876 6678899999999999999
Q ss_pred hhhHHHhhcCCCC--C-CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 86 LEDARMGFDKMPQ--R-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 86 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
+++|.+.|++..+ | +..+|..+...+...|++++|.+.|++..+. .|+..........+...++.++|...+.+.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999864 4 3567788888889999999999999999886 454432222223344667899999999776
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHH--HHHHHhcccCC-------CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRIL--DARNVFSGIAR-------KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHG 232 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 232 (579)
.... .++... ..+...+ .|+.. .+.+.+.+-.+ +...+|..+...+.+.|++++|...|++..+.+
T Consensus 192 ~~~~-~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKL-DKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhC-CccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5433 233222 2333333 44443 33333322111 234688999999999999999999999998775
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.97 E-value=1.3e-05 Score=76.94 Aligned_cols=166 Identities=11% Similarity=0.111 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK 346 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (579)
|..+.+.|...|+++.|.++|-+.- .+.-.|..|.+.|+++.|.++-.+.. |.......|..-..-+-+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDE 836 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHh
Confidence 3444455555555555555543221 12333444455555555444433221 222233333333334444
Q ss_pred cCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 347 CSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
.|++.+|.+++-.++.+ + ..|..|-+.|..+..+++..+-... .-..|...+..-+...|+...|.+-|-+
T Consensus 837 hgkf~eaeqlyiti~~p-~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 837 HGKFAEAEQLYITIGEP-D-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hcchhhhhheeEEccCc-h-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 55555555555444433 1 1234445555555555444432111 0122344445555556666666554433
Q ss_pred HHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 043608 427 ITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNF 461 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 461 (579)
.. -|.+-+.+|...+.+++|.++-+.
T Consensus 908 a~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 908 AG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 22 133444555555566666555443
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.1e-05 Score=70.45 Aligned_cols=287 Identities=11% Similarity=0.076 Sum_probs=184.9
Q ss_pred HcCCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 043608 275 ASHSNANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNA 353 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (579)
+-.++...+...+-.+.....-| +......+...+...|+.+++...|+...-.++. +........-.+.+.|+.++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhH
Confidence 33455556666555555544444 4555667777888888888888888887755321 222222333345667777777
Q ss_pred HHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043608 354 LLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG 431 (579)
Q Consensus 354 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 431 (579)
..+...+ ..+.+...|..-.......++++.|+.+-++.++.. +.+...+..-...+...++.++|.-.|+......
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 7776665 111234445555555566778888888887776652 2223333333456677788888888887766543
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHH-HHHH-hcCCcHHHHHHHHHHHhCCCCCCh-hHH
Q 043608 432 LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLI-LGYA-QFGCGDEALKLFTRMRSLGVSPNL-VTL 505 (579)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~m~~~~~~p~~-~~~ 505 (579)
+.+...|.-|+.+|...|.+.+|.-+-+...+ .+..+...+. ..+. ...--++|.++++.... +.|+. ...
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 24677888888888888888888766554331 3333333331 1222 12234778888877665 35663 467
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 506 VGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 506 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
+.+...|...|..+.++.++++.... .||....+.|.+.+...+.+++|.+.|... ...|+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 77788888889999999999888753 678888888999998888899988888766 44443
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=6e-08 Score=79.35 Aligned_cols=193 Identities=12% Similarity=0.000 Sum_probs=153.3
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhc
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQ 113 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 113 (579)
+...|.-.|.+.|++..|..-+++.++++ +.+..+|..+...|.+.|+.+.|.+.|++... .+....|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45567777888999999999999999887 66777888888999999999999998888763 456678888888899
Q ss_pred CCChhhHHHHHHHHHHCCCCC-CcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHH
Q 043608 114 NYQENDAIKLYIQMLQSGVMP-GQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARN 192 (579)
Q Consensus 114 ~~~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 192 (579)
.|++++|...|++....-.-| -..+|..+.-+..+.|+++.|...|++.++... ......-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999887754333 246788888888899999999999999888753 334566678888889999999999
Q ss_pred HhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 193 VFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 193 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
.++....+ +..+.-..|+.--+.|+.+.+-+.=.++...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88887654 4555556677777889988888877777665
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.90 E-value=3.6e-05 Score=76.70 Aligned_cols=180 Identities=11% Similarity=-0.023 Sum_probs=128.0
Q ss_pred ChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhh
Q 043608 14 LYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGF 93 (579)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 93 (579)
+...|+..|-+..+. .+.=...|..|...|....+...|...|+...+.+ ..+..........|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 356666666655553 22223478888888888889999999999999877 667778888999999999999999984
Q ss_pred cCCCCCC-----eeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccC
Q 043608 94 DKMPQRN-----VVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHG 168 (579)
Q Consensus 94 ~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (579)
-...+.+ ...|....-.|.+.++...|+.-|+...... +-|...|..+..+|...|++..|.++|.+.....+.
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 4433321 2234444445778888888988888887653 446678888899999999999999998877665422
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHhcccC
Q 043608 169 SHLIAQNALIAMYTKFDRILDARNVFSGIA 198 (579)
Q Consensus 169 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (579)
+....-...-..+..|++.+|...+..+.
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22222233344567788888888776654
No 93
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.90 E-value=9.6e-05 Score=73.05 Aligned_cols=219 Identities=13% Similarity=0.110 Sum_probs=140.6
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHH--hhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISA--CSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
.....+++..|+....++.+..+..+ |..++.+ +.+.|+.++|..+++.....+ ..|..+...+-.+|.+.|+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhh
Confidence 45567899999999999998633332 3333444 567899999999999887666 3488899999999999999
Q ss_pred hhhHHHhhcCCCC--CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCC-Cc---------ch
Q 043608 86 LEDARMGFDKMPQ--RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGL-GS---------VC 153 (579)
Q Consensus 86 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~-~~---------~~ 153 (579)
.++|..+|++..+ |+......+.-+|++-+++.+-.+.--+|-+. .+-+...|=+++...... .. ..
T Consensus 93 ~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999999986 55445555566777877776544444344332 222334433344333211 11 12
Q ss_pred hHHHHHHHHHHhc-cCCChhHHHHHHHHHhcCCCHHHHHHHhcc-----cCCCcHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 154 LGRQLHAHVIKSE-HGSHLIAQNALIAMYTKFDRILDARNVFSG-----IARKDVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 154 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
.|.+..+.+.+.+ ......-...-...+...|++++|.+++.. ....+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3444555555443 211222222334455678889999988832 2222444445566677788889999988888
Q ss_pred HHhcC
Q 043608 228 MLHHG 232 (579)
Q Consensus 228 m~~~~ 232 (579)
+..+|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88885
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=2.9e-06 Score=77.44 Aligned_cols=116 Identities=6% Similarity=-0.102 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHhCC-CCCC--hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH
Q 043608 278 SNANEAMSLFSEMRDRE-LLPD--GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNAL 354 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (579)
++.+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44556666665555431 1221 1223333344445555555555555555543 223444455555555555555555
Q ss_pred HHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 355 LVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 355 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
..|+.. ...| +..+|..+..++...|++++|.+.+++..+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555443 2122 233444444444445555555555555444
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=5.2e-08 Score=87.35 Aligned_cols=147 Identities=14% Similarity=0.066 Sum_probs=80.3
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHH----hcCCc
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENP-DVVSWSSLILGYA----QFGCG 483 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~ 483 (579)
..+...|++++|.+++... .+.......+.+|.+.++++.|.+.++.|.+- +-.+...+..++. -...+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH
Confidence 3445556666666655431 24455555666666777777777666666541 1122222333222 22356
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCCh-hHHHHHHH
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCV-HEAEDFIN 562 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 562 (579)
.+|..+|+++.+. ..+++.+++.+..++...|++++|.+++.+.... -+-++.+...++-+....|+. +.+.++++
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 7777777776553 4556666777777777777777777777665532 122344555566666666655 55666666
Q ss_pred hh
Q 043608 563 QM 564 (579)
Q Consensus 563 ~~ 564 (579)
++
T Consensus 261 qL 262 (290)
T PF04733_consen 261 QL 262 (290)
T ss_dssp HC
T ss_pred HH
Confidence 66
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=2.7e-05 Score=74.09 Aligned_cols=298 Identities=8% Similarity=-0.078 Sum_probs=182.7
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCChHHHH-HHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHH--
Q 043608 264 LASWNALIAGVASHSNANEAMSLFSEMRDRE-LLPDGLTVH-SLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNA-- 339 (579)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 339 (579)
...|..+...+...|+.+.+...+....... ..++..... .....+...|+++.+..+++...+... .+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhH
Confidence 4556666677777788888766666654432 122322221 222345678999999999999888742 23333331
Q ss_pred -HHHHHHhcCChHHHHHHHHHc-CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC
Q 043608 340 -ILTMYAKCSVLCNALLVFKEL-GKNADS-VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS 416 (579)
Q Consensus 340 -l~~~~~~~~~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 416 (579)
........+....+.+.+... +..|+. .....+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 111222345566666666543 222332 334456667888999999999999998874 4445677788889999999
Q ss_pred hHHHHHHHHHHHHcCCC-Cch--hHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHH------HHHHHHHhcCCcHH
Q 043608 417 LEMVTQLHCYITKTGLA-FDV--FVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWS------SLILGYAQFGCGDE 485 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~------~l~~~~~~~~~~~~ 485 (579)
+++|...+++..+.... ++. ..+..+...+...|++++|..++++... |....+. .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 99999999988865422 232 3455788889999999999999998763 3112221 22333334454433
Q ss_pred HHHH--HHHHHhCCC--CCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC--------CcchhHHHHHHHHhcCC
Q 043608 486 ALKL--FTRMRSLGV--SPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP--------TREHCSCVVDLLARAGC 553 (579)
Q Consensus 486 a~~~--~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~ 553 (579)
+.+. +........ ............++...|+.++|..+++.+... ...+ .........-++...|+
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR-ASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 3333 111111111 111222235677788999999999999998764 2110 11122223334568999
Q ss_pred hhHHHHHHHhh
Q 043608 554 VHEAEDFINQM 564 (579)
Q Consensus 554 ~~~A~~~~~~~ 564 (579)
.++|.+.+...
T Consensus 323 ~~~A~~~L~~a 333 (355)
T cd05804 323 YATALELLGPV 333 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=1.7e-05 Score=75.52 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCC-------C-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVS-------P-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
....++...|+.+.|..+++.+...... . ..........++...|+.++|.+.+......
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455566777777777777776653211 0 1112233334456778888888887777654
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=4.1e-07 Score=81.61 Aligned_cols=126 Identities=10% Similarity=0.092 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
.....+..+.+.++++.|.+.++.+..-.+..+...+..++.. .+.+.+|.-+|+++.+. ..++..+.+.+..++
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHH
Confidence 3333444444444444444444444222122222223332221 12345555555554433 334444555555555
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH-HHHHHHHhhCC
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL-GSARKLFNFME 463 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 463 (579)
...|++++|.+++.+....+. -++.+...++-+....|+. +.+.+.+.++.
T Consensus 212 l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555555555555554443221 2334444444444444444 34444554444
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=0.0001 Score=79.74 Aligned_cols=295 Identities=11% Similarity=0.018 Sum_probs=160.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCC------CCChH--HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc----hhH
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDREL------LPDGL--TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV----PVC 337 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~------~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 337 (579)
....+...|+++++...+......-- .+... ....+-..+...|+++.+...++...+.-...+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 33444566778888777776643210 11111 1111123345677888888887776653211111 223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-------CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-cHh
Q 043608 338 NAILTMYAKCSVLCNALLVFKEL-------GKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIK--P-DHI 402 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~ 402 (579)
+.+...+...|++++|...+++. +.. +...++..+...+...|+++.|...+++.... +.. + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 44455566678888887777664 111 11223445556677788888888877765442 211 1 122
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc--CCCC--chhHHHHHHHHHHHcCCHHHHHHHHhhCCC----C-ChhhHH--
Q 043608 403 TFNDVMGACAKMASLEMVTQLHCYITKT--GLAF--DVFVMNGLMDIYIKCGSLGSARKLFNFMEN----P-DVVSWS-- 471 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~-- 471 (579)
.+..+...+...|++++|...+...... ...+ ....+..+...+...|+.++|...+..... . ....+.
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 2334444556668888888777766532 1111 233344455666777888888777766531 1 111111
Q ss_pred ---HHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh---hHHHHHHHHhhccCchHHHHHHHHHHHHhh---CCCCC-cchh
Q 043608 472 ---SLILGYAQFGCGDEALKLFTRMRSLGVSPNL---VTLVGVLTACSHVGLVEEGLHLYRIMENEY---GIIPT-REHC 541 (579)
Q Consensus 472 ---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~ 541 (579)
..+..+...|+.+.|.+.+.+.......... ..+..+..++...|++++|...+++..... +..++ ..+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 1123344567777777776665432111111 113455666777788888888877765431 22221 2245
Q ss_pred HHHHHHHHhcCChhHHHHHHHhh
Q 043608 542 SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+..++.+.|+.++|...+.+.
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 55667777888888888777766
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.8e-05 Score=70.71 Aligned_cols=224 Identities=12% Similarity=0.063 Sum_probs=115.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHH-------
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNA------- 339 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 339 (579)
...+.+...+..+++.+++-+....+.. -+..-++..-.++...|....+........+.|.. ...-++.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3445556666666777777776666543 23333344445566666666666655555554422 1111222
Q ss_pred HHHHHHhcCChHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-HHHHHHHHHhccCCh
Q 043608 340 ILTMYAKCSVLCNALLVFKELG-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-TFNDVMGACAKMASL 417 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~ 417 (579)
+..+|.+.++++.++..|++.- ...+.. ...+....+++........-. .|... -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCH
Confidence 2224444556666666665531 100111 111122233333333332222 22221 111123455667777
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 418 EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
..|...+.++++.. +-|...|....-+|.+.|.+..|++-.+...+.| ...|..=..++....++++|.+.|.+..
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777665 3466777777777777777777777666555422 2233333344445556777777777777
Q ss_pred hCCCCCChhHH
Q 043608 495 SLGVSPNLVTL 505 (579)
Q Consensus 495 ~~~~~p~~~~~ 505 (579)
+. .|+..-+
T Consensus 454 e~--dp~~~e~ 462 (539)
T KOG0548|consen 454 EL--DPSNAEA 462 (539)
T ss_pred hc--CchhHHH
Confidence 64 3544433
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.68 E-value=0.0002 Score=62.77 Aligned_cols=289 Identities=13% Similarity=0.103 Sum_probs=186.5
Q ss_pred HHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHH---HHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 043608 176 ALIAMYTKFDRILDARNVFSGIARKDVTSWGSMI---AAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFA 252 (579)
Q Consensus 176 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~ 252 (579)
.+...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.-+.+.++.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------------------- 101 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------------------- 101 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---------------------
Confidence 3455556667777777777766666665555543 3466666666666666666554
Q ss_pred HHHhhcCCCCChhhHHH-HHHHHHcCCChHHHHHHHHHHHhCCCCC------------Ch--HHHHHHHHHhhcccchhh
Q 043608 253 RILFNEIDSPDLASWNA-LIAGVASHSNANEAMSLFSEMRDRELLP------------DG--LTVHSLLCACIGRLTLYQ 317 (579)
Q Consensus 253 ~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p------------~~--~~~~~ll~~~~~~~~~~~ 317 (579)
+||-..-.. -...+.++|.++.|..=|+........- -. ......+..+...|+...
T Consensus 102 --------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 102 --------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred --------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhh
Confidence 333222111 1244667788888888777776552110 00 112333455667788888
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 318 GMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
+++....+++.. +-+...+..-..+|...|++..|+.-++.. ... +..++--+-..+...|+.+.++...++..+
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 888888888764 346777778888899999999988777665 222 555666667777888888888888888776
Q ss_pred CCCCCcHhHHHHH-------H------HHHhccCChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHHHcCCHHHHHHH
Q 043608 395 SQIKPDHITFNDV-------M------GACAKMASLEMVTQLHCYITKTGLAFDV---FVMNGLMDIYIKCGSLGSARKL 458 (579)
Q Consensus 395 ~~~~p~~~~~~~l-------~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~ 458 (579)
. .||....... . ......++|.++.+-.+...+....... ..+..+-.++...+++.+|.+.
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 4 5665432211 1 1223456666677766666655443222 2344556677788889999888
Q ss_pred HhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 043608 459 FNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLG 497 (579)
Q Consensus 459 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 497 (579)
..++.+ | |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888774 3 35666666778888888888888888888753
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.2e-08 Score=55.75 Aligned_cols=32 Identities=28% Similarity=0.561 Sum_probs=17.1
Q ss_pred CCCCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 497 GVSPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.0002 Score=77.62 Aligned_cols=260 Identities=9% Similarity=-0.046 Sum_probs=170.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCh----HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCC-----CchhHHHHHH
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDG----LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS-----NVPVCNAILT 342 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~ 342 (579)
..+...|++++|...+++....-...+. .....+...+...|+++.|...++......... .......+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4556789999999999987763111121 223444455677899999999988876542111 1234455566
Q ss_pred HHHhcCChHHHHHHHHHc-------CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCc--HhHHHHHH
Q 043608 343 MYAKCSVLCNALLVFKEL-------GKN--A-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQ--IKPD--HITFNDVM 408 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~-------~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~ 408 (579)
.+...|+++.|...+++. +.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 778899999999887764 211 1 12234455566777899999999998875531 1122 23344455
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCC-chhHH-----HHHHHHHHHcCCHHHHHHHHhhCCCCChh-------hHHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAF-DVFVM-----NGLMDIYIKCGSLGSARKLFNFMENPDVV-------SWSSLIL 475 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~~ 475 (579)
......|+.+.|.+.+.......... ....+ ...+..+...|+.+.|.+.+.....+... .+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 67778999999999988876421111 11111 11234456689999999998776643211 1345667
Q ss_pred HHHhcCCcHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 476 GYAQFGCGDEALKLFTRMRSL----GVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788999999999999987653 32222 236667778889999999999999999864
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.64 E-value=0.00042 Score=64.71 Aligned_cols=182 Identities=14% Similarity=0.128 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHh
Q 043608 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAF-DVFVMNGLMDIYIKCGSLGSARKLFN 460 (579)
Q Consensus 382 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 460 (579)
.+....+++++...-..--.-+|...++...+..-.+.|..+|.+..+.+..+ ++.+.++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566666666554322233466777777778888889999999999877766 7788888888776 467888889888
Q ss_pred hCCC--CChhhH-HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchHHHHHHHHHHHHhhC--
Q 043608 461 FMEN--PDVVSW-SSLILGYAQFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHLYRIMENEYG-- 533 (579)
Q Consensus 461 ~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 533 (579)
--.+ +|...| ...+.-+...++-..+..+|++....++.|+ ...|..++.--..-|+...+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6553 444443 5667777888888899999999988877766 45889999888888999999988888876544
Q ss_pred CCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 534 IIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+....-..+++-|.-.+...--..-++.+
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3444444555666666555554444434333
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=0.00016 Score=72.37 Aligned_cols=558 Identities=10% Similarity=0.014 Sum_probs=265.4
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHcc
Q 043608 4 DYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKC 83 (579)
Q Consensus 4 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (579)
.....|.+...++.|..+.-...+......-...+...--.+...++...|..-|+..++.. +.|...|..+..+|.++
T Consensus 531 a~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~s 609 (1238)
T KOG1127|consen 531 ASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPES 609 (1238)
T ss_pred HHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhc
Confidence 34556666666666666633222211111111111222222445566777777777776655 56777888888888888
Q ss_pred CChhhHHHhhcCCCCCCeee-hhHHhh--hhhcCCChhhHHHHHHHHHHC------CCCCCcccHHHHHHHhcCCCcchh
Q 043608 84 GSLEDARMGFDKMPQRNVVS-WTAMIA--GCSQNYQENDAIKLYIQMLQS------GVMPGQFTFGSIIKACSGLGSVCL 154 (579)
Q Consensus 84 g~~~~A~~~~~~~~~~~~~~-~~~l~~--~~~~~~~~~~a~~~~~~~~~~------g~~p~~~~~~~li~~~~~~~~~~~ 154 (579)
|++..|+++|.+...-++.. |...-. .-+..|.+.+|++.+...... +..--..++..+...+...|=..+
T Consensus 610 Gry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 610 GRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred CceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 88888888887776533332 222221 235567788887777665432 111111223223333333332223
Q ss_pred HHHHHHHH-------HHhccCCChhHH-------------------HHHHHHHhc----CCCH---H---HHHHHhcccC
Q 043608 155 GRQLHAHV-------IKSEHGSHLIAQ-------------------NALIAMYTK----FDRI---L---DARNVFSGIA 198 (579)
Q Consensus 155 a~~~~~~~-------~~~~~~~~~~~~-------------------~~l~~~~~~----~g~~---~---~a~~~~~~~~ 198 (579)
+..+++.. .......+...| ..++..+.+ .+.. | -+.+.+-.-.
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 33332222 111111111111 111111111 1111 1 0000000000
Q ss_pred --CCcHhhHHHHHHHHHh-------cC-ChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH---H--HHHHhhc---CC
Q 043608 199 --RKDVTSWGSMIAAFSK-------LG-YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSN---F--ARILFNE---ID 260 (579)
Q Consensus 199 --~~~~~~~~~l~~~~~~-------~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~---~--~~~~~~~---~~ 260 (579)
..+..+|..+...|.+ .+ +...|...++..++.. ..+..+|+.+ ..... . ++.-|-. ..
T Consensus 770 sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaL-GVlsg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 770 SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHH-HHhhccchhhhhhhhhhhhhhcc
Confidence 0123444444443332 12 2246777777776653 3333444332 22111 1 1111111 11
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHH----cCCCCCch
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIK----MGFDSNVP 335 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ 335 (579)
+.+..+|..+...+.+..+++.|...|...+.- .|+ ...+-.........|+.-+...++..--+ .|--+...
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 455667878888888888999999988877643 443 22232222223344666666666655222 12223333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCcHh
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL------------GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS-QIKPDHI 402 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~ 402 (579)
-+-.........|+.++-+...+.+ +.+-+..+|.......-+.+.+..|..+..+.... ..+-+..
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~s 1004 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDES 1004 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333344445566666555544443 22234556777666666777777777776664321 0123444
Q ss_pred HHHHH----HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC-hhhHHH
Q 043608 403 TFNDV----MGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD-VVSWSS 472 (579)
Q Consensus 403 ~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~ 472 (579)
+|+.+ .+.++..|.++.|..-+..... ..+......-+.. .-.++++++.+.|++... .| ++....
T Consensus 1005 qynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1005 QYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred hhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 44432 2344556666655544322110 0011111111111 225778888888887762 33 334445
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH---hhCCCCCcchhHHHHHHHH
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN---EYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~ 549 (579)
++.+....+.-+.|...+-+..... +|+..+...+--.+.-..+-.....+++++.+ .-.+.-++.. ..-..|.
T Consensus 1081 va~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~l--l~e~i~~ 1157 (1238)
T KOG1127|consen 1081 VAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGL--LKELIYA 1157 (1238)
T ss_pred HHHHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhH--HHHHHHH
Confidence 5555566777788877776666542 45544444443333333333333333333332 1011111111 1223466
Q ss_pred hcCChhHHHHHHHhh-cCCC-ChhHhh
Q 043608 550 RAGCVHEAEDFINQM-ACDA-DIVVWK 574 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~-~~~~-~~~~~~ 574 (579)
+.|+-....+.+++. -+.| |+..|.
T Consensus 1158 ~~~r~~~vk~~~qr~~h~~P~~~~~Ws 1184 (1238)
T KOG1127|consen 1158 LQGRSVAVKKQIQRAVHSNPGDPALWS 1184 (1238)
T ss_pred HhhhhHHHHHHHHHHHhcCCCChHHHH
Confidence 888888888888888 2334 455554
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.58 E-value=3e-05 Score=67.67 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=116.0
Q ss_pred hHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChh-HHHHHHHHHHccCC
Q 043608 7 SSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVV-LQNHILNMYGKCGS 85 (579)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 85 (579)
..+..+|++.+|+..|...... .+.+-.++..-...|...|+...|+.-++.+++. .||-. ..-.....+.++|+
T Consensus 46 k~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 3455566666666666665542 2222222222233455566666666666666544 33321 22222344556666
Q ss_pred hhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHh
Q 043608 86 LEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKS 165 (579)
Q Consensus 86 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 165 (579)
++.|..=|+.+.+.++. +|...+|.+-+....+. ......+..+...|+...|+.....+++.
T Consensus 122 le~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e~------~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQEH------WVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHHH------HHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 66666666555431110 01111111111100000 01223344556678888888888888776
Q ss_pred ccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC---CCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 166 EHGSHLIAQNALIAMYTKFDRILDARNVFSGIA---RKDVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
. +.|...+..-..+|...|+...|+.-++... ..++..+--+-..+...|+.+.++...++..+.
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 4 5678888888888999999888877665543 446677777777788889999999888888876
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.5e-07 Score=53.00 Aligned_cols=32 Identities=41% Similarity=0.538 Sum_probs=16.2
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 043608 431 GLAFDVFVMNGLMDIYIKCGSLGSARKLFNFM 462 (579)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 462 (579)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=4e-05 Score=73.89 Aligned_cols=218 Identities=13% Similarity=0.119 Sum_probs=161.4
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 043608 168 GSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSA 247 (579)
Q Consensus 168 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~ 247 (579)
+|--..-..+...+...|-...|..+|+++ ..|.-.|.+|...|+.++|..+..+..++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---------------- 453 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---------------- 453 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC----------------
Confidence 344445566777888888899999998875 45777788889999999999888888774
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 043608 248 CSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIK 327 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 327 (579)
+|+...|..+.+......-+++|.++.+....+ .-..+.....+.++++++.+.++.-.+
T Consensus 454 -------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~ 513 (777)
T KOG1128|consen 454 -------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE 513 (777)
T ss_pred -------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh
Confidence 788888888888887777788888888765432 111111122346788888888887777
Q ss_pred cCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHH
Q 043608 328 MGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFN 405 (579)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 405 (579)
.+ +....+|-.+..+..+.++++.|.+.|..- ..+-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...+.
T Consensus 514 ~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWE 591 (777)
T KOG1128|consen 514 IN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWE 591 (777)
T ss_pred cC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeee
Confidence 65 345667777777778888888888888764 333355679999999999999999999998888876 44455566
Q ss_pred HHHHHHhccCChHHHHHHHHHHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
..+....+.|.++.|.+.+.++.
T Consensus 592 Nymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHH
Confidence 66666778888888888887776
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.7e-05 Score=63.74 Aligned_cols=137 Identities=13% Similarity=0.078 Sum_probs=69.5
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCc
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ----FGCG 483 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~ 483 (579)
..|++.+++++|........ +......=+.++.+..+++-|.+.++.|.+ .+..+.+.|..++.+ .+.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence 44555566666655544311 122222223344455556666666666654 233344444444432 2345
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCCh
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCV 554 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (579)
.+|.-+|++|-++ .+|++.+.+..+.++...|++++|..+++....+ -..++++...++-+-...|.-
T Consensus 190 qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 190 QDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCC
Confidence 6666666666553 4556666666666666666666666666666543 222344444444444444543
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.47 E-value=3.3e-06 Score=67.53 Aligned_cols=90 Identities=10% Similarity=-0.107 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhc
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA 551 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (579)
.+...+...|++++|...|++..... +.+...+..+..++...|++++|...|++.... -+.+...+..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence 34444555555555555555555432 223445555555555555555555555555531 222344555555555555
Q ss_pred CChhHHHHHHHhh
Q 043608 552 GCVHEAEDFINQM 564 (579)
Q Consensus 552 g~~~~A~~~~~~~ 564 (579)
|++++|...+++.
T Consensus 106 g~~~eAi~~~~~A 118 (144)
T PRK15359 106 GEPGLAREAFQTA 118 (144)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=0.00021 Score=66.69 Aligned_cols=386 Identities=11% Similarity=0.002 Sum_probs=222.3
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCC-hhHHHHHHHHHHccCCh
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPD-VVLQNHILNMYGKCGSL 86 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 86 (579)
+.+..|+++.|+..|-..... .++|...|..-..+++..|++++|.+--.+-.+.. |+ +..|.....++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 456789999999999988875 55688888888889999999999887766666543 44 56788888888888999
Q ss_pred hhHHHhhcCCCC--C-CeeehhHHhhhhhcC---CC--------------h--------hhHHHHHHHHHHCCCCCCccc
Q 043608 87 EDARMGFDKMPQ--R-NVVSWTAMIAGCSQN---YQ--------------E--------NDAIKLYIQMLQSGVMPGQFT 138 (579)
Q Consensus 87 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~---~~--------------~--------~~a~~~~~~~~~~g~~p~~~~ 138 (579)
++|+.-|.+-.+ | |...++-+..++... ++ + +.-..+++..... +-+...
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~--p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN--PTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC--cHhhhc
Confidence 999999887664 2 233444444443110 00 0 0000111111100 000000
Q ss_pred ---HHHHHHHhcCCCcchhH-----------------------HHHHHHHHH-hccCCChhHHHHHHHHHhcCCCHHHHH
Q 043608 139 ---FGSIIKACSGLGSVCLG-----------------------RQLHAHVIK-SEHGSHLIAQNALIAMYTKFDRILDAR 191 (579)
Q Consensus 139 ---~~~li~~~~~~~~~~~a-----------------------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 191 (579)
...++.+.......+.- .....+..+ .....-..-...+.+..-+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 01111111100000000 000000000 000001122455677777788888888
Q ss_pred HHhcccCCC--cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 043608 192 NVFSGIARK--DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNA 269 (579)
Q Consensus 192 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
+-+....+- ++.-++....+|...|.+..+...-....+.|. -....+..+-.. +..
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~-------------------~~r 303 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKA-------------------LAR 303 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHH-------------------HHH
Confidence 877765443 444566667778888888887777777666652 222233332211 112
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (579)
+..++.+.++++.+...|++.......|+..+ +....+++....+...-.+... ..-...-.+.+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 44567777888888888888766555554322 2223333333333332222221 1111222566778888
Q ss_pred hHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHH
Q 043608 350 LCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYI 427 (579)
Q Consensus 350 ~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 427 (579)
+..|++.|.++ ..+-|...|.....+|.+.+.+..|+.=-+...+.. ++....|..=..++....+++.|.+.|.+.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888876 333466778888888888888888887777666652 333455555556666777888888888887
Q ss_pred HHcC
Q 043608 428 TKTG 431 (579)
Q Consensus 428 ~~~~ 431 (579)
.+.+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 7654
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.46 E-value=1.3e-05 Score=70.97 Aligned_cols=181 Identities=12% Similarity=0.003 Sum_probs=117.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-H---hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch--hH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-H---ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDV--FV 438 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 438 (579)
....+..+...+...|+++.|...|+++.... |+ . ..+..+..++...|++++|...++.+.+....... ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45567778888899999999999999987753 32 2 35667778888899999999999998865432221 13
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHhhCCC--CChh-hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHH
Q 043608 439 MNGLMDIYIKC--------GSLGSARKLFNFMEN--PDVV-SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVG 507 (579)
Q Consensus 439 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 507 (579)
+..+..++.+. |+.++|.+.++.+.+ |+.. .+..+... ..+... . ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHHH
Confidence 44444445443 556677777766653 3321 11111110 000000 0 001124
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
+...+.+.|++++|...++...+.+.-.| ....+..+..++.+.|++++|..+++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55668888999999999999887532222 24577788999999999999999988884
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.45 E-value=9.3e-05 Score=76.56 Aligned_cols=223 Identities=12% Similarity=0.076 Sum_probs=146.7
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHhcccCCC--------cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 169 SHLIAQNALIAMYTKFDRILDARNVFSGIARK--------DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 169 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
.....|-..|......++++.|++++++.... -...|.++++.-..-|.-+...++|++..+..
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-------- 1527 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-------- 1527 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--------
Confidence 34555666666677777777777777665432 12356666666666666677777777765541
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHH
Q 043608 241 FGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQ 320 (579)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 320 (579)
.....|..|...|.+.++.++|.++|+.|.++ ..-....|...+..+.+.++-+.|..
T Consensus 1528 ---------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1528 ---------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred ---------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHH
Confidence 22345667777788888888888888888765 22455667777777777777777777
Q ss_pred HHHHHHHcCCC-CCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043608 321 VHSYIIKMGFD-SNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQI 397 (579)
Q Consensus 321 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 397 (579)
++...++.-.+ -......-.+..-.+.|+.+++..+|+.. ..+-....|+..+..-.++|+.+.+..+|++....++
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 77777665322 13344455566667788888888888876 2222567888888888888998999999999888877
Q ss_pred CCcHh--HHHHHHHHHhccCChHHHH
Q 043608 398 KPDHI--TFNDVMGACAKMASLEMVT 421 (579)
Q Consensus 398 ~p~~~--~~~~l~~~~~~~~~~~~a~ 421 (579)
.|-.. .|...+..=-..|+-+.++
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 76532 3333333333334433333
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=1.5e-05 Score=76.76 Aligned_cols=216 Identities=14% Similarity=0.141 Sum_probs=162.0
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 043608 330 FDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMG 409 (579)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 409 (579)
.+|-...-..+...+.+.|-...|..+|+++ ..|...+.+|+..|+..+|..+..+..++ +|++.-|..+.+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 3444455566778888899999999998865 35667788899999999999988887774 788888888888
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHH
Q 043608 410 ACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 486 (579)
..-...-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-.+..+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 777777788888887654422 112222223346788888888887664 2356777777777888899999
Q ss_pred HHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 487 LKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.|.+.... .|| ...|+.+..+|.+.|+-.+|...+.+..+- + .-+..+|...+-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999888873 565 458889999999999999999988888864 4 445556777777778889999999888887
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=0.0001 Score=76.33 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=97.3
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHc-CCCC---CchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChh-hHHHHHHHH
Q 043608 302 VHSLLCACIGRLTLYQGMQVHSYIIKM-GFDS---NVPVCNAILTMYAKCSVLCNALLVFKELGKNADSV-SWNSIIAAC 376 (579)
Q Consensus 302 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~ 376 (579)
|-..|......++.++|.++.++++.. ++.- -..+|.++++.-...|.-+...++|++...--|+. .|..|...|
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 334444445555555555555554432 1111 11234444444444555555555555553222322 345555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHcCCHHHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA-FDVFVMNGLMDIYIKCGSLGSA 455 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 455 (579)
.+.+.+++|.++++.|.+. ..-....|...+..+.+..+-+.|..++.+..+.-.+ -......-.++.-.+.|+.+++
T Consensus 1541 ~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 5555556666666555554 2234445555555555555555555555555433211 1223333444444555555555
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 456 RKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 456 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
..+|+.... .-...|+.++..-.++|+.+.+..+|++....++.|
T Consensus 1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 555555542 234455555555555555555555555555555544
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=3.1e-05 Score=68.64 Aligned_cols=185 Identities=9% Similarity=-0.029 Sum_probs=127.9
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH--hHH
Q 043608 332 SNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNAD----SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH--ITF 404 (579)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 404 (579)
.....+..+...+...|+++.|...|+++ ...|+ ...+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35567777888899999999999999987 33333 246778889999999999999999999886321111 134
Q ss_pred HHHHHHHhcc--------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHH
Q 043608 405 NDVMGACAKM--------ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILG 476 (579)
Q Consensus 405 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 476 (579)
..+..++... |+.+.|.+.++.+.+.... +......+..... ..... ......+...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~ 175 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH----------HHHHHHHHHH
Confidence 4444555443 7788999999998876432 2222222211110 11100 0111245667
Q ss_pred HHhcCCcHHHHHHHHHHHhCCC-CC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 477 YAQFGCGDEALKLFTRMRSLGV-SP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+.+.|++++|...+++..+... .| ....+..+..++.+.|++++|..+++.+..+
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8899999999999999987632 12 2467889999999999999999999998865
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.0029 Score=63.14 Aligned_cols=216 Identities=13% Similarity=0.049 Sum_probs=143.0
Q ss_pred hcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHH--HHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhH
Q 043608 46 SSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNM--YGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDA 120 (579)
Q Consensus 46 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 120 (579)
...+++.+|.+-...+.+.. |+. .|..++.+ +.|.|+.++|..+++.... .|..+...+-..|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45678889999999888764 332 23333443 4589999999999988763 4677888888999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCC----------HHHH
Q 043608 121 IKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDR----------ILDA 190 (579)
Q Consensus 121 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a 190 (579)
..+|++.... -|+..-...+..+|++.+++.+-.+.--++.+ ..+.....+-++++.....-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999875 67777777788888888887765555555444 344556666666666554321 1124
Q ss_pred HHHhcccCCCc-----HhhHHHHHHHHHhcCChHHHHHHHHH-HHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 191 RNVFSGIARKD-----VTSWGSMIAAFSKLGYELEALCHFNE-MLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 191 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
.+.++.+.+.+ ..-...-...+-..|++++|++++.. ..+.-. ..+.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~---------------------------~~~~ 226 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT---------------------------SANL 226 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc---------------------------ccch
Confidence 44444443322 11222233445567788888888843 333211 3334
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRE 294 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 294 (579)
..-+--++.+...++|.+..++-.++...|
T Consensus 227 ~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 227 YLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 444556677777888888888888888775
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.37 E-value=0.0023 Score=60.04 Aligned_cols=147 Identities=13% Similarity=0.074 Sum_probs=98.9
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC---C-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043608 315 LYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN---A-DSVSWNSIIAACLQHNQAEELFRLFS 390 (579)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 390 (579)
.+.....++.+...-...-..+|..+++...+..-+..|..+|.+.+.. + ++...++++.-+| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 5556666666665543334456777777777788888888888877322 2 5556666666555 466778888887
Q ss_pred HHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 391 RMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFD--VFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 391 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
--... ..-+..-....+.-+...++-..+..+|+.....++.++ ..+|..+++.-.+-|++..+.++-++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 64443 223334445566677777888888888888887755543 5778888888888888888777766543
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=0.00022 Score=67.06 Aligned_cols=216 Identities=13% Similarity=0.150 Sum_probs=140.6
Q ss_pred HhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhh
Q 043608 181 YTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFN 257 (579)
Q Consensus 181 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 257 (579)
+.+.|++.+|.-.|+...+. +..+|.-|.......++-..|+..+++..+..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld------------------------- 349 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD------------------------- 349 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------------------------
Confidence 45677777777777765544 44577777777777777778888777777664
Q ss_pred cCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----C---ChHHHHHHHHHhhcccchhhHHHHHH-HHHHc
Q 043608 258 EIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELL-----P---DGLTVHSLLCACIGRLTLYQGMQVHS-YIIKM 328 (579)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~ 328 (579)
+.|....-.|.-.|...|.-..|+..++.......+ + +...-.. ..+.....+....++|- .....
T Consensus 350 ---P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 350 ---PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred ---CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC
Confidence 456777777788888888888888888777543210 0 0000000 11111222233333433 33445
Q ss_pred CCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-hHHH
Q 043608 329 GFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-ITFN 405 (579)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~ 405 (579)
+..+|+.+...|.-.|--.|++++|...|+.. ..+| |...||.|...++...+.++|+.-|++..+. +|+- ....
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~Ry 502 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRY 502 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeeh
Confidence 54577777778877788888888888888875 4444 4557888888888888888888888888775 6663 3444
Q ss_pred HHHHHHhccCChHHHHHHHHHHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
-|.-+|...|.+++|...|-...
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHH
Confidence 45566777777777777665443
No 120
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.34 E-value=1.4e-05 Score=74.36 Aligned_cols=127 Identities=13% Similarity=0.030 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGL 517 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 517 (579)
....|+..+...++++.|..+++++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566667777888888888888887666666677888888888888999998888652 3356667777777889999
Q ss_pred hHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhhcCCC
Q 043608 518 VEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQMACDA 568 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (579)
++.|+.+.+++.. ..|+ ..+|..|..+|...|++++|+..++.+|..|
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999998885 3554 4588899999999999999999999886443
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.00052 Score=70.39 Aligned_cols=239 Identities=11% Similarity=0.059 Sum_probs=161.3
Q ss_pred CCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhh
Q 043608 32 RIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGC 111 (579)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 111 (579)
+.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+...++..++..+ .++...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~ 93 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF 93 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc
Confidence 4455688889999989999999999999877664 33344444444466677776655443 344455
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHH
Q 043608 112 SQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDAR 191 (579)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 191 (579)
....++.-+..+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.++.+.|.+...|... ++++|+
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 5556665555666666653 3344578888899999999999999999999987 66788899999999999 999999
Q ss_pred HHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhH-HHHHHHHHHHHHHHhhcC-CCCChhhHHH
Q 043608 192 NVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIF-GSVFSACSNFARILFNEI-DSPDLASWNA 269 (579)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 269 (579)
+++.+. +..+...+++.++.+++.++.... |+...+ ..++..... .. ...-+.++-.
T Consensus 170 ~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i~~ki~~-------~~~~~~~~~~~~~ 228 (906)
T PRK14720 170 TYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRIERKVLG-------HREFTRLVGLLED 228 (906)
T ss_pred HHHHHH-----------HHHHHhhhcchHHHHHHHHHHhcC---cccchHHHHHHHHHHh-------hhccchhHHHHHH
Confidence 886653 444777789999999999998773 332222 222211111 00 1233455566
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhh
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACI 310 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 310 (579)
+-..|...++|+++..+++...+.. +-|.....-++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 6677777888888888888887652 223344444444443
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=8.5e-05 Score=69.79 Aligned_cols=247 Identities=12% Similarity=0.101 Sum_probs=152.7
Q ss_pred cccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 311 GRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++. ...| |....-.|.-.|...|.-..|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4445555555555555543 224455555555555555555555555443 2222 444555666666666666666666
Q ss_pred HHHHHHCCCC--------CcHhHHHHHHHHHhccCChHHHHHHHHH-HHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 043608 389 FSRMLASQIK--------PDHITFNDVMGACAKMASLEMVTQLHCY-ITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLF 459 (579)
Q Consensus 389 ~~~m~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 459 (579)
++.-.....+ ++...-.. ..+.....+....++|-. ....+..+|+.+...|.-.|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 6654433110 00000000 111222233344444444 445565688888999999999999999999999
Q ss_pred hhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh-hHHHHHHHHhhccCchHHHHHHHHHHHHhh--C
Q 043608 460 NFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL-VTLVGVLTACSHVGLVEEGLHLYRIMENEY--G 533 (579)
Q Consensus 460 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~ 533 (579)
+.+.. .|..+||.|...++...+.++|+.-|.+.++ ++|+- +..-.|.-.|...|.+++|.+.|=...... +
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 98873 4678999999999999999999999999998 57873 355567778999999999999877655321 1
Q ss_pred C------CCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 534 I------IPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 534 ~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
. .++..+|..|=.++.-.++.+.+.+...
T Consensus 532 ~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 532 RNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred cccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 1 1122356666555666666665555543
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=0.00011 Score=62.22 Aligned_cols=155 Identities=16% Similarity=0.081 Sum_probs=107.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC
Q 043608 405 NDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFG 481 (579)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 481 (579)
..+-..+...|+-+....+....... ...+......++....+.|++.+|...+.+... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455566666666666555553322 123455566677777888888888888887763 56777888888888888
Q ss_pred CcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHH
Q 043608 482 CGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDF 560 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (579)
+++.|..-|.+..+. .| ++..++.+.-.+.-.|+.+.|..++...... -.-+..+-..|..+....|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888888774 44 3556777777777778888888888877653 222555666777777788888888877
Q ss_pred HHhh
Q 043608 561 INQM 564 (579)
Q Consensus 561 ~~~~ 564 (579)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6554
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.29 E-value=0.00014 Score=61.57 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=105.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
+..|...|+++.+....+.+... . . .+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 34577778877765554332211 0 0 1122455666666666666654 34777888888888899999
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHH-HhcCC--cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 453 GSARKLFNFMEN---PDVVSWSSLILGY-AQFGC--GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 453 ~~A~~~~~~~~~---~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
++|...+++..+ .+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+...|++++|...|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999988888764 3566677777764 56676 489999999998864 2256688888888899999999999999
Q ss_pred HHHHhhCCCCCcchh
Q 043608 527 IMENEYGIIPTREHC 541 (579)
Q Consensus 527 ~~~~~~~~~~~~~~~ 541 (579)
++.+ ..+|+..-+
T Consensus 169 ~aL~--l~~~~~~r~ 181 (198)
T PRK10370 169 KVLD--LNSPRVNRT 181 (198)
T ss_pred HHHh--hCCCCccHH
Confidence 9886 345554443
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00018 Score=60.92 Aligned_cols=153 Identities=10% Similarity=-0.005 Sum_probs=88.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 372 IIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 372 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
+-..+...|+-+....+....... .+.|.......+....+.|++..|...+.+..... ++|...++.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 334444455555555444443222 12233333345555566666666666666655433 4466666666666666666
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHH
Q 043608 452 LGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 452 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
++.|..-|.+..+ .+....+.+...|.-.|+++.|..++......+ .-|...-..+.......|++++|..+...
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6666666665543 345556666666677777777777777776653 22555566666667777777777766553
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00051 Score=63.57 Aligned_cols=135 Identities=14% Similarity=0.045 Sum_probs=91.8
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGDE 485 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~ 485 (579)
......|+++.|+..++.+.+.. +-|+.......+.+.+.++.++|.+.++++.. |+ ...+-.+..+|.+.|++.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456677777777777766543 34566666677778888888888888887763 55 3445566777888888888
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 486 ALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|+.++++.... .+-|+..|..|.++|...|+..++..-.. ..|...|++++|...+.+.
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA-------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHH
Confidence 88888877765 24467788888888888877776654333 3444566666666666555
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.24 E-value=6e-05 Score=63.90 Aligned_cols=141 Identities=9% Similarity=-0.036 Sum_probs=105.9
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDE 485 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 485 (579)
..|...|+++.+....+.+... . ..+...++.+++...++...+ .|...|..+...|...|++++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4677888888875554332211 1 012235566777777766553 567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHh-hccCc--hHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 486 ALKLFTRMRSLGVSPNLVTLVGVLTAC-SHVGL--VEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
|...+++..+.. +-+...+..+..++ ...|+ .++|.+++++..+. -+-+...+..+...+.+.|++++|...++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999863 23566777888764 67777 59999999999964 23356688889999999999999999999
Q ss_pred hh
Q 043608 563 QM 564 (579)
Q Consensus 563 ~~ 564 (579)
++
T Consensus 169 ~a 170 (198)
T PRK10370 169 KV 170 (198)
T ss_pred HH
Confidence 98
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.0013 Score=55.89 Aligned_cols=135 Identities=12% Similarity=0.086 Sum_probs=71.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh----
Q 043608 271 IAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK---- 346 (579)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 346 (579)
...|+..|++++|++...... +......=...+.+..+.+.|.+.++.|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345667777777777665411 11122222233445556666666666666543 44455555555443
Q ss_pred cCChHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC
Q 043608 347 CSVLCNALLVFKELG--KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA 415 (579)
Q Consensus 347 ~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 415 (579)
.+.+.+|.-+|+++. .+|++.+.+-...++...|++++|..++++..... .-++.|..-++......|
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLG 255 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhC
Confidence 234666666666663 33566666666666666666666666666666553 223444444444433444
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.22 E-value=0.001 Score=68.36 Aligned_cols=169 Identities=13% Similarity=0.057 Sum_probs=92.8
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..|+..+...+++++|.++.+...+. .|+...+-.++..... +. .+.+-.....++.......++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~------q~-~~~~~~~lv~~l~~~~~~~~~ 99 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSL------SR-RPLNDSNLLNLIDSFSQNLKW 99 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHH------hh-cchhhhhhhhhhhhcccccch
Confidence 3445556666666666666666666655544 2222221111111000 00 011111111344444455555
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
..+..+...|.+. .-+...+..+..+|.+.|+.+++..+++.+++.. +-++.+.|.+...|... ++++|.+++...
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 5555555555543 2233466667777777788888888888887777 55777777777777777 777777766553
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS 395 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 395 (579)
+..+...+++.++..+|.++...
T Consensus 176 ------------V~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 176 ------------IYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ------------HHHHHhhhcchHHHHHHHHHHhc
Confidence 22245555666666666666654
No 130
>PLN02789 farnesyltranstransferase
Probab=98.22 E-value=0.00093 Score=61.13 Aligned_cols=142 Identities=10% Similarity=-0.058 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc---CCc----HHHHH
Q 043608 419 MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQF---GCG----DEALK 488 (579)
Q Consensus 419 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~---~~~----~~a~~ 488 (579)
++..+.+++.+... -+..+|+...-++.+.|+++++++.++++.+ .|...|+.....+.+. |+. ++.+.
T Consensus 126 ~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 34444444443332 1344444444444444455555555554442 2233344333333222 111 34445
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC------------
Q 043608 489 LFTRMRSLGVSPNLVTLVGVLTACSH----VGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG------------ 552 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 552 (579)
...+++... +-|...|+.+...+.. .+...+|.+.+.+.... -+.+...+..|++.|....
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 554554431 1234455555444444 22334455555554431 1223334555555555321
Q ss_pred ------ChhHHHHHHHhh
Q 043608 553 ------CVHEAEDFINQM 564 (579)
Q Consensus 553 ------~~~~A~~~~~~~ 564 (579)
..++|.++++.+
T Consensus 282 ~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 282 LAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccccccHHHHHHHHHHH
Confidence 336677777777
No 131
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.21 E-value=0.0047 Score=56.75 Aligned_cols=438 Identities=11% Similarity=0.037 Sum_probs=236.0
Q ss_pred ccCChhhHHHhhcCCCC---CCe------eehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHh--cCCC
Q 043608 82 KCGSLEDARMGFDKMPQ---RNV------VSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKAC--SGLG 150 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~--~~~~ 150 (579)
+++++.+|.++|.++.+ .++ ..-+.++.+|.. ++.+.....+..+.+. .| ...|..+..++ .+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 56777778777777653 111 123445555543 3455555555555543 23 44455555543 3566
Q ss_pred cchhHHHHHHHHHHh--ccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 043608 151 SVCLGRQLHAHVIKS--EHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEM 228 (579)
Q Consensus 151 ~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 228 (579)
.+.+|.+.+...... +..+. ..+.=+. +++ ++...=+..+.++...|.+.++..+++++
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~--~Ld~ni~------------~l~-----~df~l~~i~a~sLIe~g~f~EgR~iLn~i 154 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESP--WLDTNIQ------------QLF-----SDFFLDEIEAHSLIETGRFSEGRAILNRI 154 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccc--hhhhhHH------------HHh-----hHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 666666666555443 11110 0000000 000 02222345667778888888888888887
Q ss_pred HhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcC--------CC-------hHHHHHHHHHHHhC
Q 043608 229 LHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASH--------SN-------ANEAMSLFSEMRDR 293 (579)
Q Consensus 229 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~-------~~~a~~~~~~m~~~ 293 (579)
...-. + +-..-+..+|+.++-.+.++ .. ++.+.-..++|...
T Consensus 155 ~~~ll-k----------------------rE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~ 211 (549)
T PF07079_consen 155 IERLL-K----------------------RECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAF 211 (549)
T ss_pred HHHHh-h----------------------hhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 65532 1 11124455555433222211 11 12222222233211
Q ss_pred ------CCCCChHHHHHHHHHhhc--ccchhhHHHHHHHHHHcCCCCCchh-HHHHHHHHHhcCChHHHHHHHHHcCC-C
Q 043608 294 ------ELLPDGLTVHSLLCACIG--RLTLYQGMQVHSYIIKMGFDSNVPV-CNAILTMYAKCSVLCNALLVFKELGK-N 363 (579)
Q Consensus 294 ------g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 363 (579)
.+.|....+..++....- .....--.++++.....-+.|+-.. ...+...+.+ +.+++..+-+.+.. +
T Consensus 212 d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~ 289 (549)
T PF07079_consen 212 DQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK 289 (549)
T ss_pred hhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh
Confidence 244555555555554432 2334445556666655555555332 2333344433 55565555554411 1
Q ss_pred ------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHH-------HHHHHHh-ccCCh---HHHHHHHHH
Q 043608 364 ------ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFN-------DVMGACA-KMASL---EMVTQLHCY 426 (579)
Q Consensus 364 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~l~~~~~-~~~~~---~~a~~~~~~ 426 (579)
-=+.++..++....+.++...|.+.+.-+... .|+...-. .+.+..+ ....+ ..-..+|+.
T Consensus 290 i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 290 IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 13456888888899999999999888877654 44433211 2222223 22222 233334444
Q ss_pred HHHcCCCCchhHHHHHH---HHHHHcCC-HHHHHHHHhhCCC---CChhhHHHHH----HHHHh---cCCcHHHHHHHHH
Q 043608 427 ITKTGLAFDVFVMNGLM---DIYIKCGS-LGSARKLFNFMEN---PDVVSWSSLI----LGYAQ---FGCGDEALKLFTR 492 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~ 492 (579)
....+++- ......|+ .-+.+.|. -+.|.++++.+.+ -|...-|... .+|.+ ...+.+-+.+-+-
T Consensus 368 ~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 368 IQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44443321 11122222 33555666 7788888888774 3443333322 23332 2344555555566
Q ss_pred HHhCCCCCC----hhHHHHHHHH--hhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcC
Q 043608 493 MRSLGVSPN----LVTLVGVLTA--CSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMAC 566 (579)
Q Consensus 493 m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 566 (579)
..+.|++|- ...-+.|..+ +...|++.++.-.-.-+. .+.|++.+|+.++-++....++++|..++..+|
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP- 522 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP- 522 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 667888873 3355556555 567899999887666665 568999999999999999999999999999997
Q ss_pred CCChhHhhh
Q 043608 567 DADIVVWKS 575 (579)
Q Consensus 567 ~~~~~~~~~ 575 (579)
|+..+|++
T Consensus 523 -~n~~~~ds 530 (549)
T PF07079_consen 523 -PNERMRDS 530 (549)
T ss_pred -CchhhHHH
Confidence 57666665
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=2.8e-06 Score=48.86 Aligned_cols=33 Identities=36% Similarity=0.653 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677788888888888888888888888777776
No 133
>PLN02789 farnesyltranstransferase
Probab=98.18 E-value=0.0018 Score=59.31 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=92.5
Q ss_pred hHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 350 LCNALLVFKEL--GKNADSVSWNSIIAACLQHNQ--AEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 350 ~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
+++++..++.+ ..+.+..+|+.....+.+.|+ .++++..++++.+.. +-|...|+.....+...|+++++.+.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455544443 111133344443333333343 244556665665543 3345556666666666666666666666
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHc---CC----HHHHHHHHhhCC--C-CChhhHHHHHHHHHhc----CCcHHHHHHHH
Q 043608 426 YITKTGLAFDVFVMNGLMDIYIKC---GS----LGSARKLFNFME--N-PDVVSWSSLILGYAQF----GCGDEALKLFT 491 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 491 (579)
++.+.+.. +...|+....++.+. |. .+++..+..++. . .|...|+-+...+... ++..+|.+.+.
T Consensus 167 ~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 167 QLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 66655533 344444444333333 11 234455554433 2 3556677766666652 33456777777
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccC------------------chHHHHHHHHHHH
Q 043608 492 RMRSLGVSPNLVTLVGVLTACSHVG------------------LVEEGLHLYRIME 529 (579)
Q Consensus 492 ~m~~~~~~p~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~~~ 529 (579)
+..+.+ ..+...+..|+..|+... ..++|.++++.+.
T Consensus 246 ~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred Hhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 766543 234567777777776532 2356777777763
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=5.2e-06 Score=47.72 Aligned_cols=33 Identities=33% Similarity=0.628 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPD 400 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 400 (579)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.003 Score=58.64 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 043608 268 NALIAGVASHSNANEAMSLFSEMRDRELLPDG-LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK 346 (579)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (579)
......+.+.++.++|.+.++.+... .|+. ...-.+-.++.+.|++.++..+++...... +.++..|..|.++|..
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~ 420 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHH
Confidence 33445555555555555555555543 3432 122222334444444444444444444332 2244444444444444
Q ss_pred cCChHHH
Q 043608 347 CSVLCNA 353 (579)
Q Consensus 347 ~~~~~~a 353 (579)
.|+..++
T Consensus 421 ~g~~~~a 427 (484)
T COG4783 421 LGNRAEA 427 (484)
T ss_pred hCchHHH
Confidence 4443333
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.12 E-value=5e-06 Score=47.35 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLP 297 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 297 (579)
.+|+.++.++++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888877
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.3e-06 Score=47.27 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666665
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=0.00015 Score=73.34 Aligned_cols=158 Identities=8% Similarity=-0.065 Sum_probs=110.8
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHH
Q 043608 397 IKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSL 473 (579)
Q Consensus 397 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l 473 (579)
...+...+..|.......|.+++|..+++...+.... +......+...+.+.+++++|+..+++... |+ ......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 4555777777888888888888888888888775422 455566677788888888888888888774 43 3445566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCC
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGC 553 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (579)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+. ..|...-|+.+ .++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~------~~~ 231 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRR------LVD 231 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHH------HHH
Confidence 677788888888888888888732 223667888888888888888888888888764 33333333322 233
Q ss_pred hhHHHHHHHhh
Q 043608 554 VHEAEDFINQM 564 (579)
Q Consensus 554 ~~~A~~~~~~~ 564 (579)
+..-...++++
T Consensus 232 ~~~~~~~~~~~ 242 (694)
T PRK15179 232 LNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHc
Confidence 44455566666
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0027 Score=53.62 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 043608 379 HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKL 458 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 458 (579)
.|++++|.++|+.+.+.. +.|..++..=+-..-..|+.-+|.+-+....+. +..|...|..+.+.|...|+++.|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 444555555555554442 223333333333333333333333333333322 223444444444444444444444444
Q ss_pred HhhCC
Q 043608 459 FNFME 463 (579)
Q Consensus 459 ~~~~~ 463 (579)
++++.
T Consensus 177 lEE~l 181 (289)
T KOG3060|consen 177 LEELL 181 (289)
T ss_pred HHHHH
Confidence 44443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.0001 Score=59.21 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=79.1
Q ss_pred HcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchH
Q 043608 448 KCGSLGSARKLFNFMEN--PDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~ 519 (579)
..++...+...++.+.+ |+. ...-.+...+...|++++|...|+...+....|+ ......+...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 35666666666666653 222 1222345667788999999999999988753332 224455778888999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 520 EGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
+|+..++.... -...+..+....++|.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999976542 233445677788999999999999998875
No 141
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.04 E-value=9.1e-05 Score=59.23 Aligned_cols=91 Identities=8% Similarity=-0.043 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
+..+...+...|++++|...|+.... .+...|..+..++.+.|++++|...|++..+.+ +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 44456667777888888888777663 355667777777888888888888888888753 33566777788888888
Q ss_pred CchHHHHHHHHHHHH
Q 043608 516 GLVEEGLHLYRIMEN 530 (579)
Q Consensus 516 g~~~~a~~~~~~~~~ 530 (579)
|++++|...|+...+
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888888775
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.03 E-value=8e-05 Score=59.30 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
...+...+...|++++|.+.++.+.. .+...|..+...+...|++++|..++++..+.+ +.+...+..+...+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 34444455555555555555555432 233444455555555555555555555554432 22334444455555555
Q ss_pred CchHHHHHHHHHHHH
Q 043608 516 GLVEEGLHLYRIMEN 530 (579)
Q Consensus 516 g~~~~a~~~~~~~~~ 530 (579)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555553
No 143
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.02 E-value=0.0013 Score=66.84 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=127.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM 443 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 443 (579)
++..+-.|.....+.|+.++|..+++...+. .|+ ......+...+.+.+++++|....+........ +......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 5778888999999999999999999999886 555 556777888999999999999999999987633 677788888
Q ss_pred HHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHH
Q 043608 444 DIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEE 520 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 520 (579)
.++.+.|++++|..+|+++.. |+ ...+..+..++...|+.++|...|++..+. ..|....|+.++ ++...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHH
Confidence 999999999999999999985 33 577888889999999999999999999876 345555665544 44555
Q ss_pred HHHHHHHHHHh
Q 043608 521 GLHLYRIMENE 531 (579)
Q Consensus 521 a~~~~~~~~~~ 531 (579)
-..+++++.-.
T Consensus 235 ~~~~~~~~~~~ 245 (694)
T PRK15179 235 DLAALRRLGVE 245 (694)
T ss_pred HHHHHHHcCcc
Confidence 56667766543
No 144
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.02 E-value=0.011 Score=54.02 Aligned_cols=109 Identities=20% Similarity=0.159 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVG 516 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 516 (579)
.+.+..+.-+...|+...|.++..+..-||..-|...+.+++..++|++-.++... +-++..|..++.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 34555667778889999999999999889999999999999999999988776432 234578999999999999
Q ss_pred chHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 517 LVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 517 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
...+|..++.++. +..-+..|.++|++.+|.+.--
T Consensus 252 ~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 9999998887632 2445678888888888876543
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=9.5e-05 Score=68.90 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=79.1
Q ss_pred HhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCC
Q 043608 107 MIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDR 186 (579)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 186 (579)
|+..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+...++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444555677777777777777653 33 34445666666666677777777766543 3345556666666777777
Q ss_pred HHHHHHHhcccCC--C-cHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043608 187 ILDARNVFSGIAR--K-DVTSWGSMIAAFSKLGYELEALCHFNEML 229 (579)
Q Consensus 187 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 229 (579)
++.|+.+.++... | +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7888777777654 3 44578888888888888888888887765
No 146
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.89 E-value=0.00038 Score=55.38 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (579)
...+...+...|++++|.+.++++...+ +.+...+..+...+...|++++|...++...+. .+.+...+..+..+|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 3444555566666666666666665543 224455556666666666666666666665542 2333445555666666
Q ss_pred hcCChhHHHHHHHhh
Q 043608 550 RAGCVHEAEDFINQM 564 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~ 564 (579)
..|++++|...+++.
T Consensus 97 ~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 97 ALGEPESALKALDLA 111 (135)
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666666666655
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00023 Score=59.78 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=36.8
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHH
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLY 124 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 124 (579)
.|++++|.++++.+++.+ +.|..++-.-+...-..|+--+|++-+....+ .|...|.-+-..|...|++++|.-++
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 344444555555444444 33444444444444444444444444333332 34444444444444445555555555
Q ss_pred HHHHH
Q 043608 125 IQMLQ 129 (579)
Q Consensus 125 ~~~~~ 129 (579)
+++.-
T Consensus 178 EE~ll 182 (289)
T KOG3060|consen 178 EELLL 182 (289)
T ss_pred HHHHH
Confidence 44443
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.0011 Score=53.36 Aligned_cols=53 Identities=2% Similarity=-0.105 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043608 379 HNQAEELFRLFSRMLASQIKPD--HITFNDVMGACAKMASLEMVTQLHCYITKTG 431 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 431 (579)
.++...+...++.+........ ......+...+...|++++|...|+.+....
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 4555555555555555421110 1112223344455555555555555555443
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=2.3e-05 Score=43.41 Aligned_cols=30 Identities=43% Similarity=0.793 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGV 498 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 498 (579)
+|++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777766653
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.8e-05 Score=42.49 Aligned_cols=31 Identities=35% Similarity=0.694 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDREL 295 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 295 (579)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688889999999999999999998888764
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=4.4e-05 Score=54.59 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=59.1
Q ss_pred cCCcHHHHHHHHHHHhCCCC-CChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHH
Q 043608 480 FGCGDEALKLFTRMRSLGVS-PNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 480 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 557 (579)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +......+.+++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57889999999999886431 2444566688999999999999999988 32 223 234555668889999999999
Q ss_pred HHHHHh
Q 043608 558 EDFINQ 563 (579)
Q Consensus 558 ~~~~~~ 563 (579)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999876
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00082 Score=51.98 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSC 543 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 543 (579)
++..+...+.+.|++++|.+.++++.+.. |+ ...+..+..++.+.|++++|...++.+...+.-.| ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 44556667777888888888888877642 32 23555677778888888888888888775421111 2345666
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 043608 544 VVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..++.+.|+.++|...++++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHH
Confidence 777788888888888888877
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00041 Score=51.07 Aligned_cols=92 Identities=20% Similarity=0.104 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (579)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+. .+.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4455666677777888888877777642 223355666777777777888888877777653 2333356667777777
Q ss_pred hcCChhHHHHHHHhh
Q 043608 550 RAGCVHEAEDFINQM 564 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~ 564 (579)
..|++++|...+++.
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 778888887777766
No 154
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00049 Score=49.97 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCC-CCChHHHHHHHHHhhccc--------chhhHHHHHHHHHHcCCCCCchhHH
Q 043608 268 NALIAGVASHSNANEAMSLFSEMRDREL-LPDGLTVHSLLCACIGRL--------TLYQGMQVHSYIIKMGFDSNVPVCN 338 (579)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (579)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666777999999999999999999 999999999999887643 3445678888899889999999999
Q ss_pred HHHHHHHh
Q 043608 339 AILTMYAK 346 (579)
Q Consensus 339 ~l~~~~~~ 346 (579)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88887654
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.71 E-value=0.041 Score=50.90 Aligned_cols=58 Identities=7% Similarity=-0.018 Sum_probs=38.2
Q ss_pred HHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH
Q 043608 477 YAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS 542 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 542 (579)
+..+|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~d 529 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRD 529 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHH
Confidence 3456777777666666555 567777777777777777777777777663 355555543
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.66 E-value=0.00054 Score=56.60 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=66.2
Q ss_pred HHhccc--CCCcHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 192 NVFSGI--ARKDVTSWGSMIAAFSK-----LGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 192 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
..|+.. ..++-.+|..++..|.+ .|.++=....++.|.+-|+ +.|.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv---------------------------~kDL 87 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGV---------------------------EKDL 87 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCC---------------------------cccH
Confidence 344444 34566777777777764 5788888888999999999 6666
Q ss_pred hhHHHHHHHHHcC----------------CChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc
Q 043608 265 ASWNALIAGVASH----------------SNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT 314 (579)
Q Consensus 265 ~~~~~li~~~~~~----------------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 314 (579)
.+|+.|++.+=+. .+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 88 ~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 88 EVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 6666666665432 2345677777777777777777777777777766554
No 157
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.65 E-value=0.00061 Score=63.92 Aligned_cols=120 Identities=15% Similarity=0.098 Sum_probs=77.8
Q ss_pred CCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----CChhh
Q 043608 396 QIKPDHITFNDVMGACAKMASLEMVTQLHCYITKT--GLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN----PDVVS 469 (579)
Q Consensus 396 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~ 469 (579)
+.+.+...+..+++.+....+.+.+..++.+.+.. ....-+.+..++++.|.+.|..+++..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556677777788777777778888777777643 2222234445677777777777777776665443 67777
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
+|.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777776666666555555655555555543
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=3.5e-05 Score=55.06 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=49.8
Q ss_pred cCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHH
Q 043608 12 QNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARM 91 (579)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 91 (579)
+|+++.|+.+++++....+..++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 5677778888777777523222344455567777777778777777777 3333 2233444455677777777777777
Q ss_pred hhc
Q 043608 92 GFD 94 (579)
Q Consensus 92 ~~~ 94 (579)
.|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.62 E-value=0.004 Score=56.54 Aligned_cols=101 Identities=9% Similarity=0.063 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-----Chh-HHHHHHHHhhccCchHHHHHHHHHHHHhh-CCCCC--cc
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-----NLV-TLVGVLTACSHVGLVEEGLHLYRIMENEY-GIIPT--RE 539 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~ 539 (579)
.+..+...+.+.|++++|.++|++....-... +.. .+...+-++...||...|.+.+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34556677888999999999999887653322 111 23333445667799999999999887431 22222 22
Q ss_pred hhHHHHHHHHh--cCChhHHHHHHHhhcCCCCh
Q 043608 540 HCSCVVDLLAR--AGCVHEAEDFINQMACDADI 570 (579)
Q Consensus 540 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~ 570 (579)
....|+.++-. ...+++|+.-++++. +.|.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~ 268 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDN 268 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHH
Confidence 45566777632 234555666666663 3443
No 160
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.0012 Score=61.90 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=97.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 363 NADSVSWNSIIAACLQHNQAEELFRLFSRMLAS--QIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 363 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
+.+......++..+....+.+.+..++.+.+.. ....-..|...+++.|...|..+.+..+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 346677888888888888899999999998776 233445677899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhc
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMEN----PDVVSWSSLILGYAQF 480 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~ 480 (579)
.|++.+.+.|++..|.++...|.. .+..++..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999887762 4555665555555554
No 161
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.048 Score=53.24 Aligned_cols=161 Identities=9% Similarity=-0.013 Sum_probs=85.8
Q ss_pred CChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHH-hCCC--------CChhHHHHHHHHHHcc
Q 043608 13 NLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILL-SKCQ--------PDVVLQNHILNMYGKC 83 (579)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~l~~~~~~~ 83 (579)
=..++|.++.+ ..|.+..|..+.......-.++-|...|-+... .|+. .+...-.+=+.+| -
T Consensus 677 vgledA~qfiE-------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~ 747 (1189)
T KOG2041|consen 677 VGLEDAIQFIE-------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--Y 747 (1189)
T ss_pred hchHHHHHHHh-------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--h
Confidence 34455555543 457788888887776666666666666544321 1110 0111112222222 4
Q ss_pred CChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCC----cccHHHHHHHhcCCCcchhHHHHH
Q 043608 84 GSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPG----QFTFGSIIKACSGLGSVCLGRQLH 159 (579)
Q Consensus 84 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~ 159 (579)
|++++|++++-++.++|. -|..+.+.|+|-...++++.= |-..| ...++.+...++....++.|.++|
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988887654 244455667776666555431 11111 134666666666666677776666
Q ss_pred HHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC
Q 043608 160 AHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR 199 (579)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (579)
..--.. ...+.++.+..++++-..+-+.+++
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe 850 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLARTLPE 850 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc
Confidence 542111 1234444454555554444444443
No 162
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.0015 Score=47.52 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHhHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCchhHHHH
Q 043608 371 SIIAACLQHNQAEELFRLFSRMLASQI-KPDHITFNDVMGACAKMA--------SLEMVTQLHCYITKTGLAFDVFVMNG 441 (579)
Q Consensus 371 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (579)
..|..+...+++.....+|+.+.+.|+ -|+..+|+.++.+.++.. +.-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556666889999999999999998 889999999998876543 24456778888888889999999998
Q ss_pred HHHHHHH
Q 043608 442 LMDIYIK 448 (579)
Q Consensus 442 l~~~~~~ 448 (579)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887654
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.096 Score=51.28 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=40.1
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-----cHhhHHHHHHHHHhcCChHHHHH
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-----DVTSWGSMIAAFSKLGYELEALC 223 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~ 223 (579)
.|++++|.++|-++-+.. ..+..+.+.|++-...++++.-... -..+|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677776665554433 2355566667776666666542221 12356666666666666666666
Q ss_pred HHHH
Q 043608 224 HFNE 227 (579)
Q Consensus 224 ~~~~ 227 (579)
.+..
T Consensus 818 yY~~ 821 (1189)
T KOG2041|consen 818 YYSY 821 (1189)
T ss_pred HHHh
Confidence 6654
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00017 Score=49.02 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=38.7
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhh
Q 043608 513 SHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLL 577 (579)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 577 (579)
.+.|++++|.++|+++... .+-+......+..+|.+.|++++|.++++++ ...|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3457777777777777653 2224555666777777777777777777777 4456655555443
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.00044 Score=62.43 Aligned_cols=142 Identities=15% Similarity=0.068 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-cCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 043608 402 ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK-CGSLGSARKLFNFMEN---PDVVSWSSLILGY 477 (579)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 477 (579)
.+|..++...-+.+..+.|..+|.+.++.+ ..+..+|-.....-.. .++.+.|.++|+...+ .+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356677777788888888888888887443 2233444444333223 4566668888887774 5667788888888
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCCh---hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 478 AQFGCGDEALKLFTRMRSLGVSPNL---VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
...|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++... .|+......+++-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~---~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL---FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---hhhhhHHHHHHHHh
Confidence 8888888888888888765 33333 37888888888888888888888888754 44444444444443
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.051 Score=47.87 Aligned_cols=176 Identities=13% Similarity=0.026 Sum_probs=91.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHhH---HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPDHIT---FNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK- 448 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 448 (579)
...+...|++++|.+.|+++...-..+ ... ...+..++.+.++++.|...+++..+........-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 334455666777777777666642211 111 123445566666777777777666654433222222222222221
Q ss_pred -c---------------CC---HHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 449 -C---------------GS---LGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 449 -~---------------~~---~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
. .+ ...|...|+.+ +.-|=...-..+|...+..+.+. .-..-+ .+.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-----------i~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia 182 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-----------VRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVA 182 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHH-----------HHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHH
Confidence 0 01 11222333332 22222222233444333333221 111111 455
Q ss_pred HHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 510 TACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+-|.+.|.+..|..-++.+.+.+.-.| ..+....++++|.+.|..++|.++...+
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 667888888888888888887653333 2335567788888899999988887665
No 167
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.43 E-value=0.0023 Score=49.39 Aligned_cols=93 Identities=15% Similarity=0.058 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC--CChhHHHHHHH
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS--PNLVTLVGVLT 510 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~ 510 (579)
+..+...+.+.|++++|.+.++.+.+ |+ ...+..+..++.+.|+++.|...++++...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555566666666666665542 22 124445666677777777777777777654211 11335566666
Q ss_pred HhhccCchHHHHHHHHHHHHh
Q 043608 511 ACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 677777777777777777754
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00096 Score=57.84 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=71.6
Q ss_pred HHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHH
Q 043608 446 YIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 521 (579)
..+.+++.+|...|.+..+ .|.+.|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 5677888888888887764 45666777778888888888888887777763 454 44888888888888888888
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
.+.|++.. .+.|+-.+|..=++
T Consensus 169 ~~aykKaL---eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKAL---ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhh---ccCCCcHHHHHHHH
Confidence 88888776 56777776654333
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.064 Score=51.92 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChh-----------
Q 043608 402 ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVV----------- 468 (579)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----------- 468 (579)
.+...+...+.+...+..|-++|.+|-+. .++++.....+++.+|..+-+...+ ||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 34444444455555666666676665432 2455666677777777777776664 3321
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
-+.-.-.+|.+.|+-.+|.++++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1122234667777778888888777654
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.00048 Score=50.67 Aligned_cols=92 Identities=18% Similarity=0.116 Sum_probs=58.6
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG 81 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (579)
|..+...+...|++++|+..++.+.+. .+.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 344556667777777777777777653 22333455566666677777777777777776654 344456666666666
Q ss_pred ccCChhhHHHhhcCC
Q 043608 82 KCGSLEDARMGFDKM 96 (579)
Q Consensus 82 ~~g~~~~A~~~~~~~ 96 (579)
..|++++|...++..
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 667777766665543
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.38 E-value=0.049 Score=43.90 Aligned_cols=131 Identities=13% Similarity=0.037 Sum_probs=78.7
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHH
Q 043608 398 KPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDVVSWSS 472 (579)
Q Consensus 398 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ 472 (579)
.|+...-..+..++...|+..+|...|++...--+..|....-.+.++....+++.+|...++++-+ ..+.+--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444455555555556566655555555443444555555555556666666666666665542 12233445
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+.+.|...|+...|..-|+...+. -|+...-......+.++|+.+++..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 567788888888888888888875 56555444445556778877776665555544
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.37 E-value=0.0043 Score=48.99 Aligned_cols=92 Identities=10% Similarity=0.031 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
.-.+...+...|++++|.++|+.+.. | +..-|-.|..++-..|++++|+..|......+ +-|+.++-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 33445556677777777777776652 3 34455666666777777777777777777654 23466777777777777
Q ss_pred CchHHHHHHHHHHHHh
Q 043608 516 GLVEEGLHLYRIMENE 531 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~ 531 (579)
|+.+.|.+-|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777776654
No 173
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.19 Score=49.88 Aligned_cols=115 Identities=21% Similarity=0.228 Sum_probs=90.8
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 431 GLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 431 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
|.....-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. ++.-|.-.+.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 3334444555666677888999999999999999999999999999999999988877665543 2566777889
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHH
Q 043608 511 ACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
+|.+.|+.++|.+++-+.. |.+ ..+.+|.+.|++.+|.+.-
T Consensus 753 ~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 9999999999999887654 222 5678899999999887654
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.34 E-value=0.0026 Score=59.77 Aligned_cols=95 Identities=11% Similarity=0.014 Sum_probs=73.5
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 519 (579)
...+...|++++|...|+++.+ .+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 4556678899999999988874 345677778888889999999999999988853 234667888888889999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchh
Q 043608 520 EGLHLYRIMENEYGIIPTREHC 541 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~~~~~~~ 541 (579)
+|...|++..+. .|+....
T Consensus 88 eA~~~~~~al~l---~P~~~~~ 106 (356)
T PLN03088 88 TAKAALEKGASL---APGDSRF 106 (356)
T ss_pred HHHHHHHHHHHh---CCCCHHH
Confidence 999999988853 5554443
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=0.01 Score=53.99 Aligned_cols=61 Identities=5% Similarity=-0.064 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHH
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDR----ELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYII 326 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 326 (579)
..|......|-..|++++|.+.|....+. +-..+ ...|......+ +..+++.|...++...
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH
Confidence 45677777888888888888888766432 11111 11222222333 3336666666655544
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.33 E-value=0.026 Score=49.71 Aligned_cols=174 Identities=11% Similarity=0.008 Sum_probs=99.6
Q ss_pred HHHHHhcCChHHHHHHHHHc-CCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc--
Q 043608 341 LTMYAKCSVLCNALLVFKEL-GKNADSV----SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK-- 413 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 413 (579)
...+...|++++|.+.|+.+ ..-|+.. ..-.+..++.+.++++.|...+++..+....-...-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 34445677888888888776 2223222 1234566777888888888888888776322222233333333321
Q ss_pred c---------------CCh---HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 043608 414 M---------------ASL---EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLIL 475 (579)
Q Consensus 414 ~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 475 (579)
. .+. ..|...++.+.+. |=...-..+|...+..+...=...--.+..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111 2333444444432 222223334443333332111111123456
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCC--CCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 476 GYAQFGCGDEALKLFTRMRSLGV--SPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
-|.+.|.+..|..-++.+.+.-. +.....+..++.+|...|..++|..+...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 68889999999999999987621 1124467788899999999999988877654
No 177
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.29 E-value=0.15 Score=47.31 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=83.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhH-HHHHHHHH
Q 043608 403 TFNDVMGACAKMASLEMVTQLHCYITKTG-LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSW-SSLILGYA 478 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~ 478 (579)
.|...+....+..-.+.|..+|.+..+.+ ..+++.++++++..++ .|+...|.++|+--.. ||...| +-.+.-+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45555666666667777777777777777 5667777777777554 4667777777775442 555444 34555566
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..++-+.|..+|+..++. +..+ ...|..+|.--..-|+...+..+=++|...
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 777777777777755543 2333 446777777777777777777777766643
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.27 E-value=0.0078 Score=54.44 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA-CAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777888888888887543 2223333333333 33356667788888887764 44567778888888
Q ss_pred HHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 043608 446 YIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTAC 512 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 512 (579)
+.+.++.+.|..+|++... +. ...|...+.--.+.|+.+.+.++.+++.+. -|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 8888888889888888874 33 347888888888889999888888888874 44444444444433
No 179
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.25 E-value=0.0051 Score=51.15 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHH
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGV 508 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 508 (579)
...+..+...+...|++++|...|++..+ |+ ...+..+...+.+.|++++|...+++..+. .| +...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34556666677777778887777776652 22 245666677777777777777777777764 33 34455566
Q ss_pred HHHhhccCc
Q 043608 509 LTACSHVGL 517 (579)
Q Consensus 509 ~~~~~~~g~ 517 (579)
...+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 666666665
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.012 Score=48.83 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD--HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM 443 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 443 (579)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 33456666666777777777777777765432222 245666666677777777777777776654322 344455555
Q ss_pred HHHHHcCCHHHHH
Q 043608 444 DIYIKCGSLGSAR 456 (579)
Q Consensus 444 ~~~~~~~~~~~A~ 456 (579)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 5666655544433
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.23 E-value=0.007 Score=46.00 Aligned_cols=89 Identities=21% Similarity=0.275 Sum_probs=59.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---c-chhHHHHH
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT---R-EHCSCVVD 546 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~-~~~~~l~~ 546 (579)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.... .|+ . .....+.-
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHH
Confidence 34556677888888888888888776554 335666777778888888888888877754 233 1 12223344
Q ss_pred HHHhcCChhHHHHHHHhh
Q 043608 547 LLARAGCVHEAEDFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~ 564 (579)
++...|+.++|.+++-..
T Consensus 84 ~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 566778888888776543
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.20 E-value=0.011 Score=46.73 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDL 547 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (579)
..-.+...+...|++++|.++|+-+... .| +..-|-.|.-+|-..|++++|+..|...... . +-++..+..+..+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ag~c 112 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHHHHH
Confidence 3334445555666666666666666653 33 3334555556666666666666666666543 2 2345556666666
Q ss_pred HHhcCChhHHHHHHHhh
Q 043608 548 LARAGCVHEAEDFINQM 564 (579)
Q Consensus 548 ~~~~g~~~~A~~~~~~~ 564 (579)
+...|+.+.|++.|+..
T Consensus 113 ~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 113 YLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66666666666666654
No 183
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.096 Score=52.47 Aligned_cols=73 Identities=15% Similarity=0.279 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCcHhHHHHHHHHHhc
Q 043608 338 NAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRL----FSRMLASQIKPDHITFNDVMGACAK 413 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~ 413 (579)
..++..+.+..+.+.+..+.+..+.. ++..|-.+++.+++.+.++.-.+. ++.......-|.. .+++.+++
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl----~VL~~Lak 783 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPL----HVLQILAK 783 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHH----HHHHHHhc
Confidence 45677778888888888888888877 888898999999888865554444 3333333333333 34455555
Q ss_pred cC
Q 043608 414 MA 415 (579)
Q Consensus 414 ~~ 415 (579)
.+
T Consensus 784 n~ 785 (933)
T KOG2114|consen 784 NG 785 (933)
T ss_pred CC
Confidence 44
No 184
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.28 Score=49.41 Aligned_cols=149 Identities=12% Similarity=-0.014 Sum_probs=87.5
Q ss_pred HHHHHHHHHHccCChhhHHHhhcCCCCCCeee---hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcC
Q 043608 72 LQNHILNMYGKCGSLEDARMGFDKMPQRNVVS---WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSG 148 (579)
Q Consensus 72 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 148 (579)
....-+..+.+...++-|..+-+.-.-+.... ......-+.+.|++++|..-|-+-+.. +.| ..+|.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34455666667777777777765544221111 122223345678888888877776543 222 235566666
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcH-hhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDV-TSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
..+...-..+++.+.+.|+.. ..--+.|+.+|.+.++.+...+..+...+... ......+..+.+.+-.++|..+-..
T Consensus 410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 666666677777777777643 33335678888888888887777766652211 1234455555666666666554443
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.12 E-value=0.0061 Score=54.04 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh----hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL----VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCV 544 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 544 (579)
|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+.+.-.| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334556666666666666664 2332 3455566666666777777777766665422111 12334445
Q ss_pred HHHHHhcCChhHHHHHHHhh
Q 043608 545 VDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~ 564 (579)
..++...|+.++|..+++++
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55566666777777766666
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.021 Score=45.87 Aligned_cols=126 Identities=10% Similarity=0.069 Sum_probs=72.8
Q ss_pred CCChhHHHHHHHHHHccCChhhHHHhhcCCCC----CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCC-CCCcccHHH
Q 043608 67 QPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ----RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGV-MPGQFTFGS 141 (579)
Q Consensus 67 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~ 141 (579)
-|++...-.|...+.+.|+..+|...|++... .|....-.+.++....+++..|...++.+.+..- .-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555566666667777777777777766542 3444555555566666777777777776655420 012334455
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHh
Q 043608 142 IIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVF 194 (579)
Q Consensus 142 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 194 (579)
+.+.+...|....|..-|+.....-+.|....+ ....+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHH
Confidence 566666777777777777776665443333332 233455666665554443
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.0021 Score=53.30 Aligned_cols=137 Identities=9% Similarity=-0.093 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCC--ChhHHHHHHHHHHccCChhhHHHh
Q 043608 15 YNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQP--DVVLQNHILNMYGKCGSLEDARMG 92 (579)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 92 (579)
+..+...+..+.+..+.......+..+...+...|++++|...++........+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444455555553332333345566777777777888888888888887654222 234677788888888888888888
Q ss_pred hcCCCC--C-CeeehhHHhhhhh-------cCCChhhHHHHHHHHHHC---CCCCCcccHHHHHHHhcCCCc
Q 043608 93 FDKMPQ--R-NVVSWTAMIAGCS-------QNYQENDAIKLYIQMLQS---GVMPGQFTFGSIIKACSGLGS 151 (579)
Q Consensus 93 ~~~~~~--~-~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~---g~~p~~~~~~~li~~~~~~~~ 151 (579)
+++..+ | ...++..+...+. +.|+++.|+..+++.... .+..++..+..+...+...|+
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 877653 2 2334555555555 777877665555543221 122344444444444444443
No 188
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.39 Score=47.80 Aligned_cols=124 Identities=8% Similarity=-0.066 Sum_probs=71.2
Q ss_pred HHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHh-cc-CCChhHHHHHHHHHhc
Q 043608 106 AMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKS-EH-GSHLIAQNALIAMYTK 183 (579)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~ 183 (579)
.++.-+...+.+..|.++-+.+...-..- ...|......+.+..+. .-..+++.+.+. +. ..+...|..+.+....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCc-cchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 45566667777888888777664322121 34455555555444211 112223333221 11 1344566777777778
Q ss_pred CCCHHHHHHHhcccCCC--------cHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 184 FDRILDARNVFSGIARK--------DVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
+|+.+-|..+++.=+.. +...+...+.-+.+.|+.+-...++-.+..+
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 88888888888764432 2334556667777788877777777666543
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.06 E-value=0.0066 Score=50.39 Aligned_cols=89 Identities=10% Similarity=0.052 Sum_probs=73.4
Q ss_pred CCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc----------------ccchhhHH
Q 043608 261 SPDLASWNALIAGVAS-----HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG----------------RLTLYQGM 319 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----------------~~~~~~a~ 319 (579)
..+-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+ ..+-+-++
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 5777888888888865 47788888899999999999999999999998754 23445688
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 043608 320 QVHSYIIKMGFDSNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (579)
+++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 899999999999999999999888876554
No 190
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.04 E-value=0.0068 Score=56.97 Aligned_cols=99 Identities=11% Similarity=0.009 Sum_probs=80.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcH
Q 043608 408 MGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 484 (579)
...+...|+++.|.+.+++..+.... +...+..+..+|.+.|++++|...++.+.+ | +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 45667889999999999999986643 677888889999999999999999998874 3 5667888889999999999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
+|...|++..+. .|+......++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999999985 56655444444
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.04 E-value=0.0029 Score=42.89 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=48.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 043608 213 SKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRD 292 (579)
Q Consensus 213 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 292 (579)
.+.|++++|+++|+++.+.. +.+...+..+..++.+.|++++|..+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----------------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----------------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHC----------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46788999999999988774 45677777888999999999999999998887
Q ss_pred CCCCCChHHHHHH
Q 043608 293 RELLPDGLTVHSL 305 (579)
Q Consensus 293 ~g~~p~~~~~~~l 305 (579)
. .|+...+..+
T Consensus 54 ~--~~~~~~~~~l 64 (68)
T PF14559_consen 54 Q--DPDNPEYQQL 64 (68)
T ss_dssp G--GTTHHHHHHH
T ss_pred H--CcCHHHHHHH
Confidence 6 5665444443
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.03 E-value=0.0035 Score=41.99 Aligned_cols=57 Identities=19% Similarity=0.066 Sum_probs=34.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
...+.+.|++++|.+.|++..+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566666777777777766653 113446666666666667777777666666543
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.02 E-value=0.044 Score=54.12 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchh
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHC 541 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 541 (579)
+...|.++.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++.. .+.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---~L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF---NLRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCchH
Confidence 3455666655556678888888888888875 3677777778888888888888888887776 345665554
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.01 E-value=0.0015 Score=43.84 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
+...+...|++++|...|+++.+. .+-+...+..+..++...|++++|..+++++ ...|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456788999999999999999964 2336678889999999999999999999998 45565
No 195
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.97 E-value=0.029 Score=46.48 Aligned_cols=62 Identities=5% Similarity=0.003 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKP--DHITFNDVMGACAKMASLEMVTQLHCYITK 429 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 429 (579)
.|..+...+...|++++|...|++.......| ...++..+...+...|++++|...++...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555666666666666655432111 122445555555555666666666555554
No 196
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.96 E-value=0.021 Score=56.28 Aligned_cols=87 Identities=7% Similarity=-0.109 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCC-CCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 484 DEALKLFTRMRSLG-VSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 484 ~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
..+.+..++..... ...++..|..+.-.+...|++++|...+++.... .|+...|..+.+.+...|+.++|.+.++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444443321 2334567777777777789999999999999854 5788899999999999999999999998
Q ss_pred hh-cCCCChhHh
Q 043608 563 QM-ACDADIVVW 573 (579)
Q Consensus 563 ~~-~~~~~~~~~ 573 (579)
+. ...|...+|
T Consensus 478 ~A~~L~P~~pt~ 489 (517)
T PRK10153 478 TAFNLRPGENTL 489 (517)
T ss_pred HHHhcCCCCchH
Confidence 87 444544443
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.96 E-value=0.0096 Score=45.77 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
..++..++.++++.|+++....+++..-..|+. +-...+. --......|+..++.+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 345666666677777766666666554332211 0000000 112334578899999999999999
Q ss_pred CchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCC
Q 043608 516 GLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGC 553 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 553 (579)
|++..|.++++.+.+.++++.+..+|..|++-....-+
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999988888899888877654443
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.95 E-value=0.29 Score=47.73 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=64.0
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhh
Q 043608 453 GSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEY 532 (579)
Q Consensus 453 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 532 (579)
+-+.++-.++...+..+...+..-+.+...+.-|.++|..|-+. ..++..+...++|++|..+-+..-
T Consensus 733 d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP--- 800 (1081)
T KOG1538|consen 733 DMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP--- 800 (1081)
T ss_pred HHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---
Confidence 33344444444445555555555556667777788888777542 256677788888888877766554
Q ss_pred CCCCCcc-----------hhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 533 GIIPTRE-----------HCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 533 ~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.||.. -+...-++|.++|+..+|.++++++
T Consensus 801 e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 801 EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3444432 2334456788889889999988888
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.91 E-value=0.044 Score=41.70 Aligned_cols=103 Identities=12% Similarity=0.002 Sum_probs=54.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHH
Q 043608 373 IAACLQHNQAEELFRLFSRMLASQIKPD--HITFNDVMGACAKMASLEMVTQLHCYITKTGLA--FDVFVMNGLMDIYIK 448 (579)
Q Consensus 373 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 448 (579)
..++-..|+.++|..+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445566777777777777777665544 224445556666677777777777666643211 011222222334555
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHH
Q 043608 449 CGSLGSARKLFNFMENPDVVSWSSLIL 475 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~~~~~~~~~l~~ 475 (579)
.|+.++|.+.+-...-++...|.--|.
T Consensus 88 ~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666554444333333333333
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.053 Score=46.34 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHH
Q 043608 203 TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANE 282 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 282 (579)
...+.++..+.-.|.+.-.+..+++..+... +.++.....|++.-.+.|+.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~---------------------------e~~p~L~s~Lgr~~MQ~GD~k~ 230 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYP---------------------------EQEPQLLSGLGRISMQIGDIKT 230 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCC---------------------------cccHHHHHHHHHHHHhcccHHH
Confidence 3445666666667777777777777766543 4555666666777777777777
Q ss_pred HHHHHHHHHhCCCCCChHHH
Q 043608 283 AMSLFSEMRDRELLPDGLTV 302 (579)
Q Consensus 283 a~~~~~~m~~~g~~p~~~~~ 302 (579)
|...|+...+..-..+..++
T Consensus 231 a~~yf~~vek~~~kL~~~q~ 250 (366)
T KOG2796|consen 231 AEKYFQDVEKVTQKLDGLQG 250 (366)
T ss_pred HHHHHHHHHHHHhhhhccch
Confidence 77777766544333333333
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.84 E-value=0.0061 Score=41.41 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC-chHHHHHHHHHHHH
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVG-LVEEGLHLYRIMEN 530 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 530 (579)
+...|..+...+...|++++|+..|++..+.+ +-+...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566677777777777777777777777753 224556777777777777 67777777777664
No 202
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.012 Score=51.21 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=82.7
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhcCCcHHH
Q 043608 410 ACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD---VVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 486 (579)
-+.+.+++.+|...|.+.++... -|...|..-..+|.+.|.++.|.+-.+....-| ..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 46778999999999999998753 377778888999999999999999999888644 46788999999999999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHH
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
++.|++.++ +.|+..+|..=+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 999999988 6888777754443
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.76 E-value=0.1 Score=44.76 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=25.5
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHH
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 557 (579)
+...|.+.|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 445566666666666666666654221111 12344556666666665543
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.71 E-value=0.48 Score=43.54 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=15.0
Q ss_pred cHHHHHHHhcCCCcchhHHHHHH
Q 043608 138 TFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
+|..+.......|+.+.|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 45566666667777777766654
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.042 Score=48.28 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=82.4
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC---CcHHHHHHHHHHHhCCCCCChhHHH
Q 043608 433 AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFG---CGDEALKLFTRMRSLGVSPNLVTLV 506 (579)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~ 506 (579)
+-|..-|-.|..+|...|+.+.|..-|.+..+ ++...+..+..++..+. ...++..+|+++.... +-|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 44788899999999999999999999987764 56667777776655432 4578889999998863 33566777
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 507 GVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 507 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
.|...+...|++.+|...|+.|.+. -|.......++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~---lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL---LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc---CCCCCchHHHHH
Confidence 8888899999999999999999863 343344444444
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.14 Score=45.08 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=40.2
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc---cCchHHHHHHHHHHHHhhCCCC-Ccchh
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH---VGLVEEGLHLYRIMENEYGIIP-TREHC 541 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 541 (579)
|...|-.|...|...|+++.|..-|.+..+.. .+++..+..+..++.. ..+..++..+|+++.+. .| +....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccHHHH
Confidence 34445555555555555555555555444421 1223333333333321 11244444455544432 22 22233
Q ss_pred HHHHHHHHhcCChhHHHHHHHhh
Q 043608 542 SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..|...+...|++.+|...|+.|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHH
Confidence 33444444555555555555554
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.51 E-value=0.65 Score=42.52 Aligned_cols=295 Identities=15% Similarity=0.083 Sum_probs=183.6
Q ss_pred hHHHHHHHHHc--CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHh--hcccchhhHHHHHHHHHHcCCCCCchh--HHH
Q 043608 266 SWNALIAGVAS--HSNANEAMSLFSEMRDRELLPDGLTVHSLLCAC--IGRLTLYQGMQVHSYIIKMGFDSNVPV--CNA 339 (579)
Q Consensus 266 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 339 (579)
.|..|-.++.- .|+-..|.+.-.+-.+. +..|..-.-.++.+- .-.|+.+.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555543 56777776666554322 445555566666543 4568999999999988753 22211 223
Q ss_pred HHHHHHhcCChHHHHHHHHHc-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHh--HHHHHHHHHh--
Q 043608 340 ILTMYAKCSVLCNALLVFKEL-GKNAD-SVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPDHI--TFNDVMGACA-- 412 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~l~~~~~-- 412 (579)
|.-.-.+.|+.+.|..+-++. +..|. ...+...+...|..|+|+.|+++++.-.... +.++.. .-..++.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333345678888888888776 33333 4467888999999999999999998765543 344432 2222332221
Q ss_pred c-cCChHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCcHHHHH
Q 043608 413 K-MASLEMVTQLHCYITKTGLAFDVFV-MNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSLILGYAQFGCGDEALK 488 (579)
Q Consensus 413 ~-~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 488 (579)
. ..+...|...-.+..+ +.|+..- --.-..++.+.|+..++-.+++.+-+ |.+..+.. ..+.+.|+. +..
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gdt--a~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGDT--ALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCCc--HHH
Confidence 1 1234445544444333 4454332 22335678899999999999998874 55554433 333455543 333
Q ss_pred HHHHHHhC-CCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhc-CChhHHHHHHHhhc
Q 043608 489 LFTRMRSL-GVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA-GCVHEAEDFINQMA 565 (579)
Q Consensus 489 ~~~~m~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 565 (579)
-+++..+. .++|| ......+..+....|++..|..--+... ...|....|..|.+.-... ||-.++.+++-+--
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 33333221 14555 5577788888999999999988877776 4578888888888887544 99999999998874
Q ss_pred CCCChhHh
Q 043608 566 CDADIVVW 573 (579)
Q Consensus 566 ~~~~~~~~ 573 (579)
..|..-.|
T Consensus 391 ~APrdPaW 398 (531)
T COG3898 391 KAPRDPAW 398 (531)
T ss_pred cCCCCCcc
Confidence 34433333
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.50 E-value=0.73 Score=43.03 Aligned_cols=422 Identities=12% Similarity=0.076 Sum_probs=221.0
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-
Q 043608 122 KLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK- 200 (579)
Q Consensus 122 ~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 200 (579)
.+-++..+. +-|..+|-.|+.-+...+..++..+++++|..- .+.-..+|...+.+-....++.....+|.+-...
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444444432 567788999999999999999999999988653 2333556777777777778888888888776554
Q ss_pred -cHhhHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCCCChH-hHHHHHHHHHHH--------------HHHHhhc
Q 043608 201 -DVTSWGSMIAAFSKLGYE------LEALCHFNEMLHHGAYQPNEF-IFGSVFSACSNF--------------ARILFNE 258 (579)
Q Consensus 201 -~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~~p~~~-~~~~~l~~~~~~--------------~~~~~~~ 258 (579)
+...|...+..-.+.... ....+.|+-....-++.|-.. .|...+...... .+..+.+
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 566777766654443311 112233333333222244332 233322221111 2223333
Q ss_pred CCC-C---------ChhhHHHHHHH-----HHc--CCChHHHHHHHHHHHh--CCCCC----ChHHHHHHHHH-hh----
Q 043608 259 IDS-P---------DLASWNALIAG-----VAS--HSNANEAMSLFSEMRD--RELLP----DGLTVHSLLCA-CI---- 310 (579)
Q Consensus 259 ~~~-~---------~~~~~~~li~~-----~~~--~~~~~~a~~~~~~m~~--~g~~p----~~~~~~~ll~~-~~---- 310 (579)
+.. | |-..|..=++. +.. .--+-.|...+++... .|+.. +..+++.+-+. +.
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 221 1 11111111111 110 1113456666666542 24332 22333332110 00
Q ss_pred -----c------ccc-h-hhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH-cCCCCChhhHHHHH-HH
Q 043608 311 -----G------RLT-L-YQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKE-LGKNADSVSWNSII-AA 375 (579)
Q Consensus 311 -----~------~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~l~-~~ 375 (579)
+ .++ . +...-++++.... +...+.+|-.--..+...++-+.|+...+. +...|+ .+..+ ..
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~ 342 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEY 342 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHH
Confidence 0 000 0 0111112222111 111222333333333445566666655544 233334 22222 22
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHh---ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 376 CLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACA---KMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
|-...+.+.+...|+...+. ...-...+.+-+ ..|+++.-.+++-+-+. --..+|.+++....+..-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred HhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhH
Confidence 33344445555555443221 000011111111 12333333332211111 2345677888888888889
Q ss_pred HHHHHHHhhCCC-----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHH-HHHHHHhhccCchHHHHHHHH
Q 043608 453 GSARKLFNFMEN-----PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTL-VGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 453 ~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~ 526 (579)
+.|..+|-++.+ +++..+++++.-++ .|+...|.++|+--..+ -||...| .-.+..+...++-+.|..+|+
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 999999998874 67888888887665 47888999999876654 4554433 355666778899999999999
Q ss_pred HHHHhhCCCCC--cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 527 IMENEYGIIPT--REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 527 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
....+ +..+ ..+|..+++.=..-|+...|..+-++|
T Consensus 491 tsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 491 TSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 66653 2333 568899999888999998888777777
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.47 E-value=0.022 Score=45.84 Aligned_cols=71 Identities=25% Similarity=0.280 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCCcchh
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN----EYGIIPTREHC 541 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 541 (579)
...++..+...|++++|..+.+++.... +.|...|..++.+|...|+...|.+.|+++.+ ..|+.|++.+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445666777888888888888888753 34666888888888888888888888877653 34777877654
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.47 E-value=0.48 Score=40.57 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=79.7
Q ss_pred HHHHHhcCChHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC
Q 043608 341 LTMYAKCSVLCNALLVFKEL----GK-NADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA 415 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 415 (579)
...+...|++.+|.+.|+.+ +. +--....-.++.++.+.|+++.|...+++..+.-..-...-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 34455566677777776665 11 11222344556666666777777776666655421111112222222221111
Q ss_pred ChHHHHHHHHHHHHcCCCC-----chhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHH
Q 043608 416 SLEMVTQLHCYITKTGLAF-----DVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLF 490 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 490 (579)
...... ....++ -...+..++.-|=...-..+|...+..+.+.=...--.+...|.+.|.+..|..-+
T Consensus 92 ~~~~~~-------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 92 QIPGIL-------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHH--------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred hCccch-------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 111000 000000 01223333333333333344433333332111111122456688899999999999
Q ss_pred HHHHhCCCCCC----hhHHHHHHHHhhccCchHHHH
Q 043608 491 TRMRSLGVSPN----LVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 491 ~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~ 522 (579)
+.+++. -|+ ......++.++.+.|..+.+.
T Consensus 165 ~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 998886 344 235677888888888877543
No 211
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.44 E-value=0.017 Score=39.24 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCC-C
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHS-N 279 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~ 279 (579)
++..|..+...+.+.|++++|+..|.+..+.. +.+...|..+..++.+.| +
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----------------------------p~~~~~~~~~g~~~~~~~~~ 53 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----------------------------PNNAEAYYNLGLAYMKLGKD 53 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----------------------------TTHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------CCCHHHHHHHHHHHHHhCcc
Confidence 45678888888999999999999999988875 456778888888888888 6
Q ss_pred hHHHHHHHHHHHh
Q 043608 280 ANEAMSLFSEMRD 292 (579)
Q Consensus 280 ~~~a~~~~~~m~~ 292 (579)
+++|++.++...+
T Consensus 54 ~~~A~~~~~~al~ 66 (69)
T PF13414_consen 54 YEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999998887765
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.43 E-value=0.021 Score=39.26 Aligned_cols=56 Identities=20% Similarity=0.077 Sum_probs=34.4
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 475 LGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 475 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..|.+.+++++|.++++++...+ +.+...+.....++...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566666666766666666642 223445555666666666777776666666643
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.41 E-value=0.039 Score=48.99 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----hhHHHHH
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN--PDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN----LVTLVGV 508 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l 508 (579)
|..-+..+.+.|++++|...|+.+.+ |+. ..+--+...|...|++++|...|+.+.+. .|+ ...+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHH
Confidence 44444444555677777777766653 433 34556677778888888888888888764 232 3344455
Q ss_pred HHHhhccCchHHHHHHHHHHHHh
Q 043608 509 LTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
...+...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66677888888888888888865
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.39 E-value=0.017 Score=44.47 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=39.5
Q ss_pred CCCCCcchhHHHHHHHHhcCChhHHHHHHHhh----cCCCChhHhhhhhc
Q 043608 533 GIIPTREHCSCVVDLLARAGCVHEAEDFINQM----ACDADIVVWKSLLA 578 (579)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~ 578 (579)
...|+..+..+++.+|+..|++..|.++++.. +..-+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 67788999999999999999999999999988 55556888887763
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.38 E-value=0.013 Score=40.38 Aligned_cols=62 Identities=15% Similarity=-0.070 Sum_probs=50.3
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhH
Q 043608 509 LTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVV 572 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~ 572 (579)
-..|.+.+++++|.+.++.+... .+.++..+.....++.+.|++++|.+.+++. ...|+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 35678999999999999999964 2345667788899999999999999999998 44555443
No 216
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.24 Score=45.49 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=24.8
Q ss_pred HhcCCcHHHHHHHHHHHhC---CCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 478 AQFGCGDEALKLFTRMRSL---GVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
.+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.--++..
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 3455555555555555432 122233344444444555555555555544443
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.048 Score=47.32 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc-chhHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSP--NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR-EHCSCVV 545 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 545 (579)
.|+.-+. +.+.|++..|..-|...++....- ....+-.|..++..+|++++|..+|..+.+.++-.|.. +.+-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555544 345677999999999888863211 13356678888899999999999999988876555543 6777888
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 043608 546 DLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~ 564 (579)
.+..+.|+.++|..+|+++
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 8888999999999998888
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.30 E-value=0.031 Score=50.87 Aligned_cols=52 Identities=8% Similarity=0.017 Sum_probs=39.9
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCC---CChHHHHHHHHHhhcccchhhHHHHHH
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELL---PDGLTVHSLLCACIGRLTLYQGMQVHS 323 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~ 323 (579)
.-+|+.|+......+|+...+.|.. .-+..|..+-++|.-.+++++|.++..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4578999999999999999988732 223456677778888888888887754
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.26 E-value=0.013 Score=41.00 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=38.9
Q ss_pred hHHHHHHHHhhccCchHHHHHHHHHHHHhhC-CC---CC-cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 503 VTLVGVLTACSHVGLVEEGLHLYRIMENEYG-II---PT-REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+++.+...|...|++++|+..+++..+... .. |. ..++..+..+|...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566667777777777777777776654311 11 11 335666777777778888877777664
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.42 Score=41.10 Aligned_cols=128 Identities=10% Similarity=0.073 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH-----H
Q 043608 369 WNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGL-----M 443 (579)
Q Consensus 369 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~ 443 (579)
.+.++..+.-.|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...++...+..-..+....+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34556666667788888888888888766667777777888888888888888888877754434443333333 3
Q ss_pred HHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 444 DIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
..|.-.+++.+|...+.++.. .|+..-|.-.-+..-.|+..+|++..+.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345556677777777777663 33444444444445567778888888888775
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.24 E-value=0.037 Score=50.45 Aligned_cols=128 Identities=10% Similarity=-0.021 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHH----cCCC-CCchhHHHHHHHHHhcCChHHHHHHHHHc-------CCC-CChh
Q 043608 301 TVHSLLCACIGRLTLYQGMQVHSYIIK----MGFD-SNVPVCNAILTMYAKCSVLCNALLVFKEL-------GKN-ADSV 367 (579)
Q Consensus 301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~-~~~~ 367 (579)
.|..+-+.|.-.|+++.++...+.-++ .|-+ .....+..+.+++.-.|+++.|.+.|+.. +.+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344444455556677777665544322 2211 12234556667777777777777777642 333 2334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCcHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLA----SQ-IKPDHITFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
+..++...|.-..++++|+..+.+-.. .+ ..-....+.++..++...|..++|..+...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555667777777777777776655322 11 22345567778888888888887777665544
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.18 E-value=0.057 Score=46.62 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=63.6
Q ss_pred HHHHhcccC--CCcHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCC
Q 043608 190 ARNVFSGIA--RKDVTSWGSMIAAFSK-----LGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSP 262 (579)
Q Consensus 190 a~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 262 (579)
.+..|.... ++|-.+|-+.+..+.. .++++-....++.|.+-|+ +.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGV---------------------------er 105 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGV---------------------------ER 105 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcc---------------------------hh
Confidence 345555555 5677788888877754 4677777788899999999 55
Q ss_pred ChhhHHHHHHHHHcCC----------------ChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc
Q 043608 263 DLASWNALIAGVASHS----------------NANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT 314 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 314 (579)
|..+|+.|++.+-+.. +-+=+++++++|...|+.||..+-..+++++.+.+-
T Consensus 106 Dl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 106 DLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 5666665555544322 223356666666666666666666666666665544
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.036 Score=44.63 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHH
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 283 (579)
+...++..+...|++++|.++.+.+.... +-+...|..+|.++...|+...|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d----------------------------P~~E~~~~~lm~~~~~~g~~~~A 115 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD----------------------------PYDEEAYRLLMRALAAQGRRAEA 115 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS----------------------------TT-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC----------------------------CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45567778888999999999999998875 56788999999999999999999
Q ss_pred HHHHHHHHh-----CCCCCChHH
Q 043608 284 MSLFSEMRD-----RELLPDGLT 301 (579)
Q Consensus 284 ~~~~~~m~~-----~g~~p~~~~ 301 (579)
.+.|+.+.. .|+.|+..+
T Consensus 116 ~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 116 LRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHHHHhCcCcCHHH
Confidence 999988753 377776655
No 224
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.78 Score=42.37 Aligned_cols=153 Identities=13% Similarity=0.008 Sum_probs=93.0
Q ss_pred HHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCcHhHHHH---HHH-------
Q 043608 342 TMYAKCSVLCNALLVFKELGKNADSVSWNSIIAA--CLQHNQAEELFRLFSRMLASQIKPDHITFND---VMG------- 409 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---l~~------- 409 (579)
.++...|+.++|.+.--.+..--....+...+++ +.-.++.+.+...|++.... .|+...-.. ...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHh
Confidence 4556678888877665554222123334444444 33467788888888887665 454432221 111
Q ss_pred ---HHhccCChHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHH---HHHHHhc
Q 043608 410 ---ACAKMASLEMVTQLHCYITKT---GLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSL---ILGYAQF 480 (579)
Q Consensus 410 ---~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~ 480 (579)
-..+.|++..|.+.+.+.+.. +..++...|.....+..+.|+.++|..-.+...+-|....-.+ ..++...
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 234677788888888777633 3345566666666677778888888887777776554332222 2345566
Q ss_pred CCcHHHHHHHHHHHhC
Q 043608 481 GCGDEALKLFTRMRSL 496 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~~ 496 (579)
++|++|++-+++..+.
T Consensus 335 e~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7778888877777654
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.05 E-value=1.2 Score=40.94 Aligned_cols=291 Identities=13% Similarity=0.016 Sum_probs=148.2
Q ss_pred hhHHhhhhhc--CCChhhHHHHHHHHHHCCCCCCcccHHHHHHH--hcCCCcchhHHHHHHHHHHhccCCChhH--HHHH
Q 043608 104 WTAMIAGCSQ--NYQENDAIKLYIQMLQSGVMPGQFTFGSIIKA--CSGLGSVCLGRQLHAHVIKSEHGSHLIA--QNAL 177 (579)
Q Consensus 104 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 177 (579)
|..|-.++.. .|+-..|.++-.+..+. +..|......++.+ ..-.|+.+.|.+-|+-|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444432 45555565555544321 22344444444433 23456777777777766542 11111 1122
Q ss_pred HHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHH
Q 043608 178 IAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARI 254 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~ 254 (579)
.-.--+.|+.+.|++.-++.-.. -...+...+...+..|+++.|+++++.-....++.++...-.-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r----------- 229 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR----------- 229 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH-----------
Confidence 22334567777777766554432 3356777888888888888888888877766543333221110
Q ss_pred HhhcCCCCChhhHHHHHHHHH---cCCChHHHHHHHHHHHhCCCCCChHHH-HHHHHHhhcccchhhHHHHHHHHHHcCC
Q 043608 255 LFNEIDSPDLASWNALIAGVA---SHSNANEAMSLFSEMRDRELLPDGLTV-HSLLCACIGRLTLYQGMQVHSYIIKMGF 330 (579)
Q Consensus 255 ~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 330 (579)
..|+.+-. -..+...|.+.-.+.. .+.||..-- .....++.+.|+..++-.+++.+-+...
T Consensus 230 -------------AvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 230 -------------AVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred -------------HHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 11111100 0122333443333322 245554322 2233566777777777777777776654
Q ss_pred CCCchhHHHHHHHHHhcCChHH--HH--HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCN--AL--LVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFND 406 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 406 (579)
.|+. . .+..+.+.|+... .. +-+..|... +..+.-.+..+-...|++..|..--+..... .|....|..
T Consensus 295 HP~i--a--~lY~~ar~gdta~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lL 367 (531)
T COG3898 295 HPDI--A--LLYVRARSGDTALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLL 367 (531)
T ss_pred ChHH--H--HHHHHhcCCCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHH
Confidence 4432 2 2222344444221 11 122333333 4555556666666677777666555554443 566666666
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHHcC
Q 043608 407 VMGACA-KMASLEMVTQLHCYITKTG 431 (579)
Q Consensus 407 l~~~~~-~~~~~~~a~~~~~~~~~~~ 431 (579)
|...-. ..|+-.++.+.+.+..+.-
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcCC
Confidence 655443 3477777777776666543
No 226
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.94 E-value=1.2 Score=40.32 Aligned_cols=160 Identities=12% Similarity=-0.012 Sum_probs=78.2
Q ss_pred HHHHHHHHHhccCChH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-C--ChhhHHHHHHH
Q 043608 403 TFNDVMGACAKMASLE---MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-P--DVVSWSSLILG 476 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~l~~~ 476 (579)
++..++.++...+..+ +|..+++.+...... .+.++-.-++.+.+.++.+++.+.+.+|.. . ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 3445555555555433 344444444322211 223333334455556666777766666653 1 22344444444
Q ss_pred HH--hcCCcHHHHHHHHHHHhCCCCCChh-HHH----HHHHHhhccC------chHHHHHHHHHHHHhhCCCCCcchhHH
Q 043608 477 YA--QFGCGDEALKLFTRMRSLGVSPNLV-TLV----GVLTACSHVG------LVEEGLHLYRIMENEYGIIPTREHCSC 543 (579)
Q Consensus 477 ~~--~~~~~~~a~~~~~~m~~~~~~p~~~-~~~----~l~~~~~~~g------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
+. .......|...+..+....+.|... ... ..+......+ ..+...++++...+..+-+.+..+-.+
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a 244 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA 244 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 42 1233456666666666554555442 111 1111122221 245555566655544344445444333
Q ss_pred H-------HHHHHhcCChhHHHHHHHh
Q 043608 544 V-------VDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 544 l-------~~~~~~~g~~~~A~~~~~~ 563 (579)
+ +....+.+++++|.++++-
T Consensus 245 ~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 245 IHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3 3345678999999999874
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.91 E-value=0.014 Score=40.79 Aligned_cols=63 Identities=24% Similarity=0.355 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCC--CC---CC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLG--VS---PN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+++.+...|...|++++|+..+++..+.. .. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777778888888888888888776431 11 22 44788888899999999999999988764
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=95.81 E-value=0.15 Score=40.75 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=61.0
Q ss_pred HHHHcCCHHHHHHHHhhCC--C-CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHH
Q 043608 445 IYIKCGSLGSARKLFNFME--N-PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 521 (579)
-+-..|++++|..+|.-+. + -+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3456788888888887665 2 3445566666777778888888888887766542 3555566677788888888888
Q ss_pred HHHHHHHHH
Q 043608 522 LHLYRIMEN 530 (579)
Q Consensus 522 ~~~~~~~~~ 530 (579)
+.-|+....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888887775
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.66 E-value=1.9 Score=40.28 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCCCChh------hHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 338 NAILTMYAKCSVLCNALLVFKELGKNADSV------SWNSIIAACLQ---HNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
..++-+|....+++..+++++.+...|+.. .-....-++.+ .|+.++|.+++..+......+++.++..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666666666666666664443221 11122333444 666777777776655444555666655554
Q ss_pred HH
Q 043608 409 GA 410 (579)
Q Consensus 409 ~~ 410 (579)
..
T Consensus 225 RI 226 (374)
T PF13281_consen 225 RI 226 (374)
T ss_pred HH
Confidence 43
No 230
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.59 E-value=4.8 Score=46.37 Aligned_cols=161 Identities=9% Similarity=0.056 Sum_probs=100.6
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCC--CCChhHHHHHHHHHHccCChhhHHHhhc-CCCCCCeeehhHHhhhhhcCCC
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKC--QPDVVLQNHILNMYGKCGSLEDARMGFD-KMPQRNVVSWTAMIAGCSQNYQ 116 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 116 (579)
++..+-.+.+.+.+|...++.-..... ......+..+...|+..+++++...+.. ....|+. ...|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 445566678889999999988421111 1122344444558999999999888776 3444432 333445567899
Q ss_pred hhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHH-HHHHHHHhcCCCHHHHHHHhc
Q 043608 117 ENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQ-NALIAMYTKFDRILDARNVFS 195 (579)
Q Consensus 117 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~ 195 (579)
+..|...|+++.+.+ ++...+++-+++.....|.++.+.-..+-.... ..+....+ +.=+.+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999874 444778888888877788777766644433322 12222222 222334467777777776655
Q ss_pred ccCCCcHhhHHHH
Q 043608 196 GIARKDVTSWGSM 208 (579)
Q Consensus 196 ~~~~~~~~~~~~l 208 (579)
.++..+|.+.
T Consensus 1543 ---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVE 1552 (2382)
T ss_pred ---cccccchhHH
Confidence 4455555544
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.46 E-value=0.68 Score=35.21 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=74.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSAR 456 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 456 (579)
.-.|..++..++..+.... .+..-++.+|--....-+-+...+.++.+-+ -.|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence 4467777777777776654 3445555555544444444444444443322 22221 223333333
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCC
Q 043608 457 KLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGI 534 (579)
Q Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 534 (579)
..+-.+- .+.......+..+..+|+-|.-.+++..+.+. -.+++..+-.+..+|.+.|+..++.+++.+.-+. |+
T Consensus 77 ~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3332222 22233455667778888888888888887753 3677788888888888888888888888888766 54
No 232
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.28 E-value=0.019 Score=46.03 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=65.5
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhh
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQEND 119 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (579)
.++..+.+.+.+.....+++.+...+...+...++.++..|++.++.++..++++.... .-...+++.+.+.|-+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46778888899999999999999877667788999999999999888999998884332 444566777777777777
Q ss_pred HHHHHHHH
Q 043608 120 AIKLYIQM 127 (579)
Q Consensus 120 a~~~~~~~ 127 (579)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777764
No 233
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.17 E-value=3.5 Score=40.38 Aligned_cols=181 Identities=9% Similarity=-0.004 Sum_probs=109.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKELGKN--ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
+...|...+.--.+.|+.+.+.-+|+....+ .=...|-..+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456667777777888988888888886333 12223444444444458888888777766554333222222222223
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCch-hHHHHHHHHHHHcCCHHHHH---HHHhhCCC--CChhhHHHHHHH-----HHh
Q 043608 411 CAKMASLEMVTQLHCYITKTGLAFDV-FVMNGLMDIYIKCGSLGSAR---KLFNFMEN--PDVVSWSSLILG-----YAQ 479 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~---~~~~~~~~--~~~~~~~~l~~~-----~~~ 479 (579)
+-..|+++.|..+++.+.+.- |+. ..-..-+....+.|+.+.+. .++....+ .+......+.-- +.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 345679999999999888654 332 22223344556778887777 44444332 222222222222 234
Q ss_pred cCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 043608 480 FGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVG 516 (579)
Q Consensus 480 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 516 (579)
.++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 57889999999999886 5667778888888777655
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=95.15 E-value=0.087 Score=42.03 Aligned_cols=84 Identities=4% Similarity=-0.156 Sum_probs=51.6
Q ss_pred hhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCC---CCCeeehhHHhhhhhcCCChhhHH
Q 043608 45 CSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMP---QRNVVSWTAMIAGCSQNYQENDAI 121 (579)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 121 (579)
+-..|++++|..+|.-+.-.+ +.+..-+..|..++-..+++++|+..|.... ..|+..+-.....+...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 445677777777777666555 3444555556666666677777776664432 334444555566666677777777
Q ss_pred HHHHHHHH
Q 043608 122 KLYIQMLQ 129 (579)
Q Consensus 122 ~~~~~~~~ 129 (579)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77776665
No 235
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.15 E-value=0.31 Score=39.00 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=22.2
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFV-MNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
+..+..++|+.-|..+.+.|...-+.. .-.........|+...|...|+++-
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 344455555555555555544321111 1111222334445555555555444
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.09 E-value=0.24 Score=42.96 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=70.7
Q ss_pred CCChhhHHHHHHHHHc-----CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcc----------------cchhhHH
Q 043608 261 SPDLASWNALIAGVAS-----HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGR----------------LTLYQGM 319 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 319 (579)
+.|-.+|-..+..+.. .+.++-....++.|.+-|+.-|..+|..|++.+-+. .+-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455666666655543 456777778889999999999999999999887542 2344578
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 320 QVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
.++++|..+|+.||..+-..+++++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 9999999999999999999999999887753
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.07 E-value=0.76 Score=44.47 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=98.6
Q ss_pred HHhcCCHHHHHHHHHHHH-HCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 043608 376 CLQHNQAEELFRLFSRML-ASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGS 454 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 454 (579)
..-.++++.+.++.+.-. -..++ ..-...++.-+.+.|..+.|+++... + ..-.+...+.|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHH
Confidence 345677777666654111 11122 33466777777788888888877533 2 123455678899999
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCC
Q 043608 455 ARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGI 534 (579)
Q Consensus 455 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 534 (579)
|.++.++.. +...|..|.....++|+++-|.+.|.+..+ +..|+-.|...|+.+...++.+....+ |
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c-
Confidence 988877765 566899999999999999999998887543 455666677778887777777666654 2
Q ss_pred CCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCC
Q 043608 535 IPTREHCSCVVDLLARAGCVHEAEDFINQMACDA 568 (579)
Q Consensus 535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (579)
-++.-..++.-.|+.++..+++.+-+.-|
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 14445566667788888888877765333
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.67 Score=41.47 Aligned_cols=115 Identities=8% Similarity=0.029 Sum_probs=49.8
Q ss_pred cCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHH----HHHHHHhccCChHHH
Q 043608 347 CSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFN----DVMGACAKMASLEMV 420 (579)
Q Consensus 347 ~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a 420 (579)
.|++.+|...++++ ..+.|..+++..-.++.-.|+.+.....+++.... ..||...|. ...-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34444444444444 22224444444455555555555555555554433 122221111 111223344555555
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 421 TQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
++.-++..+.+ +.|.....++...+.-.|+..++.++..+-.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 55544444333 2233333444444444555555555544443
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.91 E-value=2.3 Score=36.93 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=36.5
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCC---hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPN---LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+.+-|.+.|.+..|..-+++|++. .+-. ...+-.+..+|...|-.++|...-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345677777788888878887775 2222 2245556667777777777777666554
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.81 E-value=0.33 Score=40.24 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh--HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH--HH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV--TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS--CV 544 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 544 (579)
.+..+..-|++.|+.+.|++.+.++.+....|... .+..+++.....|++..+...+.+......-..+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566777788888888888888887765555432 566777777788888888888777765422211211111 11
Q ss_pred HH--HHHhcCChhHHHHHHHhhc
Q 043608 545 VD--LLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 545 ~~--~~~~~g~~~~A~~~~~~~~ 565 (579)
.. .+...|++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 2345678888888776663
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.80 E-value=3.5 Score=38.54 Aligned_cols=164 Identities=15% Similarity=0.026 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCcHhHHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQ---IKPDHITFNDVMGACAK---MASLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
.....++-+|....+++...++.+.+.... +.-....-....-++.+ .|+.++|.+++..+....-.+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334456667888999999999999998752 11122222234445566 889999999999977666678888888
Q ss_pred HHHHHHHHc---------CCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCC-cH---HHHHHH----HHHHhCCCC--
Q 043608 441 GLMDIYIKC---------GSLGSARKLFNFMEN--PDVVSWSSLILGYAQFGC-GD---EALKLF----TRMRSLGVS-- 499 (579)
Q Consensus 441 ~l~~~~~~~---------~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~m~~~~~~-- 499 (579)
.+.+.|-.. ...++|...|.+.-+ ||..+--.++..+...|. .+ +..++- ....++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 888776421 235667777766553 332221122222222332 21 222222 112233322
Q ss_pred -CChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 500 -PNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 500 -p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+-.-+.+++.++.-.|+.++|.+..++|.+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2344556677777777888888888887775
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.29 Score=45.07 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc-chhHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR-EHCSCVVD 546 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~ 546 (579)
..+..+.-+|.+.+++..|++.-.+.+..+ ++|...+--=..+|...|+++.|+..|+++.+ +.|+. ..-..|+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHH
Confidence 345556667777777777777777777653 44555555666677777777777777777774 34543 34444544
Q ss_pred HHHhcCChh-HHHHHHHhh
Q 043608 547 LLARAGCVH-EAEDFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~-~A~~~~~~~ 564 (579)
+-.+..+.. ...++|.+|
T Consensus 334 l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 444444333 335666666
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=1.8 Score=37.03 Aligned_cols=52 Identities=8% Similarity=0.030 Sum_probs=21.4
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhhCCC--CCcchhHHHHHHHHhcCChhHHHHH
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEYGII--PTREHCSCVVDLLARAGCVHEAEDF 560 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 560 (579)
.|-.+....|+..|...++.-..-.++. -+..+...|+.+| ..||.+++..+
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3334444445555555555432221111 1222344444444 34555555444
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.69 E-value=1.7 Score=34.46 Aligned_cols=111 Identities=9% Similarity=0.004 Sum_probs=58.3
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK 183 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (579)
...++..+...+.+......++.+...| ..+...++.++..+++.. .....+.+.. ..+......+++.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3455666666667777777777777665 345566677777776543 2233333321 1223333445555666
Q ss_pred CCCHHHHHHHhcccCCCcHhhHHHHHHHHHhc-CChHHHHHHHHH
Q 043608 184 FDRILDARNVFSGIARKDVTSWGSMIAAFSKL-GYELEALCHFNE 227 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~ 227 (579)
.+.++++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 6666666655555432 12222223333 556666665544
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.69 E-value=0.67 Score=45.55 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=60.2
Q ss_pred CCHHHHHHHHhhCCC--CChhhHHHH-HHHHHhcCCcHHHHHHHHHHHhCC--C-CCChhHHHHHHHHhhccCchHHHHH
Q 043608 450 GSLGSARKLFNFMEN--PDVVSWSSL-ILGYAQFGCGDEALKLFTRMRSLG--V-SPNLVTLVGVLTACSHVGLVEEGLH 523 (579)
Q Consensus 450 ~~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~--~-~p~~~~~~~l~~~~~~~g~~~~a~~ 523 (579)
...+.|.++++.+.+ |+...|... .+.+...|++++|++.|++..... . +.....+.-+...+...++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 445666666666664 665555433 234455667777777776554311 0 1122344455556666677777777
Q ss_pred HHHHHHHhhCCCCCcchhHHH-HHHHHhcCCh-------hHHHHHHHhh
Q 043608 524 LYRIMENEYGIIPTREHCSCV-VDLLARAGCV-------HEAEDFINQM 564 (579)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~ 564 (579)
.|..+.+.... +..+|.-+ .-++...|+. ++|.+++.+.
T Consensus 327 ~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 327 YFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 77777654222 22222222 2334455666 6666666665
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.61 E-value=1.8 Score=34.34 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 043608 206 GSMIAAFSKLGYELEALCHFNEMLHHG 232 (579)
Q Consensus 206 ~~l~~~~~~~~~~~~a~~~~~~m~~~~ 232 (579)
..++..+.+.+.+.....+++.+...+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~ 37 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN 37 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC
Confidence 344555555566666666666665554
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.59 E-value=1.5 Score=33.41 Aligned_cols=139 Identities=11% Similarity=0.155 Sum_probs=71.0
Q ss_pred cCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH
Q 043608 276 SHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL 355 (579)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (579)
-.|.+++..+++.+.... .+..-++.+|--....-+-+...+.++.+ |--.|.. .+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHHH
Confidence 356666666666666543 23344444443333333333333333332 2111221 2233333333
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043608 356 VFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA 433 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 433 (579)
.+-.++. +.......+..+...|+-+...+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 78 C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333222 3344566677777888888888888887653 3677777788888888888888888888888877753
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.56 E-value=4.6 Score=38.77 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=79.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 043608 375 ACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGS 454 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 454 (579)
-.-+..+.+.-.+.-++..+. .|+..+-..++ +--......++++++++..+.|-. . +.+......
T Consensus 177 ~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~~~~~ 242 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQFLQH 242 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h-------hchhhhhhc
Confidence 334444555555555555543 45544433322 222344577888888877654311 0 001000000
Q ss_pred HHHHHhhCC----CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 455 ARKLFNFME----NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 455 A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
.-..++... .+-...-..+..++.+.|+.++|++.+++|.+.....| ......|+.++...+.+.++..++.+-.
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 001111111 22233344567777788999999999999986532212 3366788999999999999999988875
Q ss_pred H
Q 043608 530 N 530 (579)
Q Consensus 530 ~ 530 (579)
+
T Consensus 323 D 323 (539)
T PF04184_consen 323 D 323 (539)
T ss_pred c
Confidence 4
No 249
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.48 E-value=0.01 Score=47.62 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=81.2
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK 82 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (579)
..+|+.+.+.+.++.+...++.+... +...+....+.++..|++.++.+...++++. .+..-...++..|.+
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~ 82 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEK 82 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHh
Confidence 46788999999999999999999876 5556778889999999999877777777762 111334466667777
Q ss_pred cCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCC
Q 043608 83 CGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 150 (579)
.|.+++|.-++.++...+ ..+..+...++++.|.+...+ .++...|..+++.+...+
T Consensus 83 ~~l~~~a~~Ly~~~~~~~-----~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 83 HGLYEEAVYLYSKLGNHD-----EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSK 139 (143)
T ss_dssp TTSHHHHHHHHHCCTTHT-----TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTST
T ss_pred cchHHHHHHHHHHcccHH-----HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcC
Confidence 777777777777665421 111123334455555532222 224555555555555444
No 250
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.46 E-value=0.19 Score=47.38 Aligned_cols=96 Identities=14% Similarity=-0.033 Sum_probs=63.1
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhCC--CCCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHH
Q 043608 434 FDVFVMNGLMDIYIKCGSLGSARKLFNFME--NPDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVG 507 (579)
Q Consensus 434 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 507 (579)
.+...++.+..+|.+.|++++|...|++.. +|+. .+|..+..+|...|+.++|+..+++..+.+ .| .|..
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~ 148 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFST 148 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHH
Confidence 356778888888888888888888888866 3553 347888888888888888888888888752 11 2221
Q ss_pred HHH--HhhccCchHHHHHHHHHHHHhhCC
Q 043608 508 VLT--ACSHVGLVEEGLHLYRIMENEYGI 534 (579)
Q Consensus 508 l~~--~~~~~g~~~~a~~~~~~~~~~~~~ 534 (579)
+.. .+....+.++..++++.+.+- |.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~-G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKG-GE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHh-CC
Confidence 111 011223444666666666653 44
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.29 E-value=1.4 Score=42.71 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
++...|..|.+...+.|+++-|.+.|++..+ +..++--|...|+.+...++.+.....|- ++...
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af 409 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAF 409 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHH
Confidence 3445566666666666666666666655432 33444444555555555555555444441 34444
Q ss_pred HHHHhcCChHHHHHHHHHcCC
Q 043608 342 TMYAKCSVLCNALLVFKELGK 362 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~ 362 (579)
.++.-.|+.++..+++.+.+.
T Consensus 410 ~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHHHcCC
Confidence 455555666666666655443
No 252
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.25 E-value=2 Score=39.05 Aligned_cols=50 Identities=6% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc--cC----ChHHHHHHHHHHHHcC
Q 043608 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAK--MA----SLEMVTQLHCYITKTG 431 (579)
Q Consensus 382 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~ 431 (579)
+++...+++.|.+.|+.-+..+|......... .. ...++..+++.|++..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 44566778888888888777666553322222 22 2345666777777543
No 253
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.16 E-value=0.16 Score=47.87 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHHHHccCChhhHHHhhcCCCC--CCee----ehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHH
Q 043608 67 QPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--RNVV----SWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFG 140 (579)
Q Consensus 67 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 140 (579)
+.+...++.+..+|.+.|++++|+..|++..+ |+.. +|..+..+|...|+.++|++.+++..+.+ ...|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhHH
Confidence 44555666666666667777777777666542 4322 36666666777777777777777766642 11122
Q ss_pred HHHH--HhcCCCcchhHHHHHHHHHHhcc
Q 043608 141 SIIK--ACSGLGSVCLGRQLHAHVIKSEH 167 (579)
Q Consensus 141 ~li~--~~~~~~~~~~a~~~~~~~~~~~~ 167 (579)
.+.. .+...++.....++++...+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2211 11233455555556666665554
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=4 Score=36.31 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=37.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 043608 210 AAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSE 289 (579)
Q Consensus 210 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 289 (579)
......|++.+|..+|+...... +.+...--.++.+|...|+.+.|..++..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~----------------------------~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA----------------------------PENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC----------------------------cccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 34566777777777777776653 23344555667777888888888888877
Q ss_pred HHhC
Q 043608 290 MRDR 293 (579)
Q Consensus 290 m~~~ 293 (579)
+...
T Consensus 194 lP~~ 197 (304)
T COG3118 194 LPLQ 197 (304)
T ss_pred Cccc
Confidence 6543
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.99 E-value=10 Score=40.63 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=63.6
Q ss_pred HHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh--HHHHHHHHhhccCchHHH
Q 043608 444 DIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV--TLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a 521 (579)
+.+...+.+++|.-.|+..-+ ..-.+.+|...|+|.+|+.+..++.. .-+.. +-..|+.-+..++++-+|
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhH
Confidence 333445555665555554332 12235666677777777777666542 11222 224667777888888888
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
-+++.+.... ....+..|++...+++|.++...-
T Consensus 1019 a~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1019 AKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 8887777643 334566777778888888877655
No 256
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=8.7 Score=39.09 Aligned_cols=170 Identities=12% Similarity=0.099 Sum_probs=102.2
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCC---CcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRI---RPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK 82 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (579)
|+++.+.+.+++|++..+.... ..+ -.......|..+...|+++.|-...-.|. ..+...|..-+..++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhcc
Confidence 6788899999999998876553 333 23355667777888889998888888886 4566777777777777
Q ss_pred cCChhhHHHhhcCCCC-CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHH
Q 043608 83 CGSLEDARMGFDKMPQ-RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAH 161 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (579)
.+.......++=.-+. -+...|..++..+.. .+... |.+.++. .+++...-..++++- . .+
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~----F~e~i~~-Wp~~Lys~l~iisa~--~----------~q 497 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKG----FLELIKE-WPGHLYSVLTIISAT--E----------PQ 497 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHH----HHHHHHh-CChhhhhhhHHHhhc--c----------hH
Confidence 7777665554433332 355678888877766 33222 2222221 122222212222211 0 01
Q ss_pred HHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcH
Q 043608 162 VIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDV 202 (579)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 202 (579)
..+. ..+..+...|+..|...++++.|.+.+-...+.++
T Consensus 498 ~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 498 IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1111 11223334488889999999999998877766543
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=1.8 Score=38.88 Aligned_cols=152 Identities=11% Similarity=-0.054 Sum_probs=109.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHc---CCCCchhHHHHHHHHHHHcCCHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKT---GLAFDVFVMNGLMDIYIKCGSLG 453 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 453 (579)
.-.|+..+|...++++.+. .+.|...+...-.+|...|+.+.-...++++... +++....+-..+..++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3478888888888888876 5667778888888999999998888888887743 22222333445556667899999
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC----ChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 454 SARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP----NLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 454 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
+|++.-++..+ .|.-.-.+....+-..|++.++.++..+-... .+- -...|....-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988875 34445567777788889999998887665432 121 13356666667778899999999998
Q ss_pred HHHH
Q 043608 527 IMEN 530 (579)
Q Consensus 527 ~~~~ 530 (579)
+-.-
T Consensus 272 ~ei~ 275 (491)
T KOG2610|consen 272 REIW 275 (491)
T ss_pred HHHH
Confidence 6443
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.56 E-value=0.16 Score=30.47 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=23.3
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHH
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHI 76 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 76 (579)
++..+..++.+.|++++|.++++++++.. +.++..+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 44556666666677777777777666654 4444444433
No 259
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.55 E-value=8.2 Score=37.99 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=82.6
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH-cc
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG-KC 83 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 83 (579)
+|.---.....+.+...+..+... .|.-..-|......-.+.|..+.+..+|++-+. +++.+...|...+..+. ..
T Consensus 51 li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~ 127 (577)
T KOG1258|consen 51 LIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNN 127 (577)
T ss_pred HHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccC
Confidence 333333333445555666666653 444444556666666778888899999998885 45777777877776665 34
Q ss_pred CChhhHHHhhcCCCC------CCeeehhHHhhhhhcCCChhhHHHHHHHHHHC
Q 043608 84 GSLEDARMGFDKMPQ------RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQS 130 (579)
Q Consensus 84 g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (579)
|+.+...+.|+.... .+...|...|.--..++++.....+|++.++.
T Consensus 128 ~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 128 GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 677777777776653 34556777787777888888888888888764
No 260
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.47 E-value=10 Score=38.93 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=35.5
Q ss_pred CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCC
Q 043608 100 NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150 (579)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 150 (579)
|...-=.+|--+.|.|++++|.++....... .......|...+..+....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 3344445677789999999999999665543 4556678888899987754
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.44 E-value=8.7 Score=37.94 Aligned_cols=158 Identities=11% Similarity=-0.007 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhcccCCC-c---------HhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCh
Q 043608 173 AQNALIAMYTKFDRILDARNVFSGIARK-D---------VTSWGSMIAAFSK----LGYELEALCHFNEMLHHGAYQPNE 238 (579)
Q Consensus 173 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~---------~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~ 238 (579)
....++...+-.|+-+..++.+.+..+. + ...|...+..++. ..+.+.|.+++..+.++
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~------- 262 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR------- 262 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-------
Confidence 4456777777888888888888765442 1 1234444444433 44567788888887776
Q ss_pred HhHHHHHHHHHHHHHHHhhcCCCCChhhHHHH-HHHHHcCCChHHHHHHHHHHHhCCC---CCChHHHHHHHHHhhcccc
Q 043608 239 FIFGSVFSACSNFARILFNEIDSPDLASWNAL-IAGVASHSNANEAMSLFSEMRDREL---LPDGLTVHSLLCACIGRLT 314 (579)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~ 314 (579)
-|+...|... .+.+...|++++|++.|+....... +.....+.-+.-.+.-..+
T Consensus 263 ----------------------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 263 ----------------------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred ----------------------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 4555555433 3556667888888888886553210 1122223333444555667
Q ss_pred hhhHHHHHHHHHHcCCCCCchhHHHHHH-HHHhcCCh-------HHHHHHHHHc
Q 043608 315 LYQGMQVHSYIIKMGFDSNVPVCNAILT-MYAKCSVL-------CNALLVFKEL 360 (579)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-------~~a~~~~~~~ 360 (579)
+++|.+.+..+.+.+- -+..+|.-+.- ++...|+. ++|.++|.++
T Consensus 321 w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 7777777776666431 13333333322 22334444 5555555544
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.40 E-value=3.1 Score=32.64 Aligned_cols=53 Identities=19% Similarity=0.091 Sum_probs=27.0
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCC---hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 478 AQFGCGDEALKLFTRMRSLGVSPN---LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.+.|++++|.+.|+.+...- +.. ...-..++.+|.+.|++++|...++++.+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44555555555555555431 111 223344555555555555555555555544
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=5.1 Score=34.48 Aligned_cols=86 Identities=17% Similarity=0.102 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC--------CCh-hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC---CCChhHHH
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN--------PDV-VSWSSLILGYAQFGCGDEALKLFTRMRSLGV---SPNLVTLV 506 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~ 506 (579)
+......+.+...+++|-..+.+-.. ++. ..|...|-.+.-..++..|.+.++.--..+- +-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 33444555666666665544443321 221 2344555566667778888888877443211 12355777
Q ss_pred HHHHHhhccCchHHHHHHH
Q 043608 507 GVLTACSHVGLVEEGLHLY 525 (579)
Q Consensus 507 ~l~~~~~~~g~~~~a~~~~ 525 (579)
.|+.+|- .||.+++..++
T Consensus 233 nLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHhc-cCCHHHHHHHH
Confidence 7777664 47777766544
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.14 E-value=15 Score=39.63 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=12.4
Q ss_pred hhHhhhcCChhHHHHHHHH
Q 043608 6 VSSLCKQNLYNEALVAYDF 24 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~ 24 (579)
++.+++++++.+|+++.++
T Consensus 684 vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 684 VRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566677777777666543
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.11 E-value=0.66 Score=35.16 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=61.5
Q ss_pred HhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC----CCeeehhHHh---hhhhcCCC
Q 043608 44 ACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ----RNVVSWTAMI---AGCSQNYQ 116 (579)
Q Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~---~~~~~~~~ 116 (579)
+++..|+.+.|++.|.+.+..- +.....||.-.+++--+|+.++|++-+++..+ .....+.+.+ ..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4667788888888888877654 56778888888888888888888877776653 1122222222 23566788
Q ss_pred hhhHHHHHHHHHHCC
Q 043608 117 ENDAIKLYIQMLQSG 131 (579)
Q Consensus 117 ~~~a~~~~~~~~~~g 131 (579)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888887766
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.10 E-value=0.9 Score=39.73 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-C-ChhHHHHHH
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS-P-NLVTLVGVL 509 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~l~ 509 (579)
.|+.-+.. .+.|++..|..-|....+ |+ ...+--|..++...|++++|..+|..+.+.-.+ | -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 355667777777776663 22 223444678888999999999999888875211 1 135677777
Q ss_pred HHhhccCchHHHHHHHHHHHHh
Q 043608 510 TACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 510 ~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888999999999999999986
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.02 E-value=4.2 Score=33.09 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHc-CCCCCchhHHH
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKM-GFDSNVPVCNA 339 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 339 (579)
+|+...|..+++.+.+.|++.. +..+...++-+|.......+-.+... ...+.++--+|.++ + ..+..
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkRL~-----~~~~~ 94 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKRLG-----TAYEE 94 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHHhh-----hhHHH
Confidence 6777778888888888877544 34445556667766655444333221 12222222222221 1 01334
Q ss_pred HHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 340 ILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
+++.+...|++-+|.++.+..+.. +......++.+....+|...-..+++-.
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~-~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKV-DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCc-ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555566666666666666554322 2223334444444445444444444433
No 268
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=1.9 Score=40.03 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG 431 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 431 (579)
.+++.+..++.+.+++..|++.-++....+ ++|......-..++...|+++.|...|+++.+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 345666667777777777777777666653 4566666666667777777777777777776643
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.35 E-value=0.51 Score=28.30 Aligned_cols=28 Identities=36% Similarity=0.624 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
+|..+...|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555566666666666666666554
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.15 E-value=0.25 Score=27.64 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHccCChhhHH
Q 043608 58 HDHILLSKCQPDVVLQNHILNMYGKCGSLEDAR 90 (579)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 90 (579)
|++.++.. |.++..|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555 667778888888888888888775
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.13 E-value=3.1 Score=37.95 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=68.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------CChh------
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGL-----AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-------PDVV------ 468 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~------ 468 (579)
+..++...+.++++++.|+...+... .....++..|...|....++++|.-+..+..+ .|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44555556667777777766553211 11235566777777777777776655444331 2211
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHH----hCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMR----SLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+.-.|.-++...|+...|.+.-++.. .+|-+|- ......+.+.|-..|+.+.|+.-|+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 11223445666777766666665543 3332222 3345566677777788777777766654
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.84 E-value=2.2 Score=32.49 Aligned_cols=52 Identities=25% Similarity=0.126 Sum_probs=25.5
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 478 AQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
...|+.+.|++.|.+.... .+-+...|+.-..++--+|+.++|+.=+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555442 122344555555555555555555555554443
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.52 E-value=0.42 Score=27.12 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCCcHHHHHHHHH
Q 043608 471 SSLILGYAQFGCGDEALKLFTR 492 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~ 492 (579)
..|...|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.42 E-value=2.1 Score=34.49 Aligned_cols=51 Identities=20% Similarity=0.004 Sum_probs=21.6
Q ss_pred CCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC
Q 043608 148 GLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA 198 (579)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (579)
..|.++....-.+-+...+.+--......|.-+-.+.|++..|.+.|..+.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 334444444333333333322223333344444445555555555555443
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.35 E-value=10 Score=34.68 Aligned_cols=50 Identities=6% Similarity=0.101 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc--c----cchhhHHHHHHHHHHcC
Q 043608 280 ANEAMSLFSEMRDRELLPDGLTVHSLLCACIG--R----LTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~ 329 (579)
+++.+.+++.|.+.|..-+..+|-+....... . .....+..+++.|.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 45667788888888888888777553333222 2 22446667777777664
No 276
>PRK11906 transcriptional regulator; Provisional
Probab=91.32 E-value=4.3 Score=38.79 Aligned_cols=143 Identities=12% Similarity=-0.013 Sum_probs=97.2
Q ss_pred ChHHHHHHHHHHH-HcCCCCc-hhHHHHHHHHHHH---------cCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC
Q 043608 416 SLEMVTQLHCYIT-KTGLAFD-VFVMNGLMDIYIK---------CGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFG 481 (579)
Q Consensus 416 ~~~~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 481 (579)
..+.|..+|.+.. ...++|+ ...|..+..++.. .....+|.+.-+...+ .|......+..+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4667888888887 3344554 3444444433322 2234556666666553 56777777777778888
Q ss_pred CcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---cchhHHHHHHHHhcCChhHH
Q 043608 482 CGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT---REHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 557 (579)
+++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+. .|. ..+....++.|+..+ +++|
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL---sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL---EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 899999999999985 676 446666666777889999999999997643 554 334555566777666 7888
Q ss_pred HHHHHhh
Q 043608 558 EDFINQM 564 (579)
Q Consensus 558 ~~~~~~~ 564 (579)
..++-+-
T Consensus 427 ~~~~~~~ 433 (458)
T PRK11906 427 IKLYYKE 433 (458)
T ss_pred HHHHhhc
Confidence 8877554
No 277
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.11 E-value=9.8 Score=33.22 Aligned_cols=183 Identities=12% Similarity=0.052 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc----
Q 043608 376 CLQHNQAEELFRLFSRMLASQI--KPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC---- 449 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 449 (579)
-.+.|++++|.+.|+.+..... +-...+...++.++-+.++++.|....++..+.-....-.-|...|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3456777777777777765421 1223455555666677777777777777766544333333344444444311
Q ss_pred ---CCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 450 ---GSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 450 ---~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
.+...+..-+..+. .++.-|=.+.=...|......+... . ..-=..+.+-|.+.|.+..|..-++
T Consensus 124 ~~~rDq~~~~~A~~~f~--------~~i~ryPnS~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 124 DVTRDQSAARAAFAAFK--------ELVQRYPNSRYAPDAKARIVKLNDA---L-AGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred ccccCHHHHHHHHHHHH--------HHHHHCCCCcchhhHHHHHHHHHHH---H-HHHHHHHHHHHHHhcChHHHHHHHH
Confidence 11111111111111 0111110111111111111111110 0 0001235567889999999999999
Q ss_pred HHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHHHhhcC-CCCh
Q 043608 527 IMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFINQMAC-DADI 570 (579)
Q Consensus 527 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 570 (579)
+|.+.+.-.+ ..+.+..+..+|...|-.++|...-.-++. .||.
T Consensus 192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 192 EVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9998532222 233556678899999999999988877742 3444
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.92 E-value=0.51 Score=26.76 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=13.9
Q ss_pred HHHHHHHhhccCchHHHHHHHHHH
Q 043608 505 LVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 505 ~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666666666666653
No 279
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=21 Score=36.52 Aligned_cols=50 Identities=14% Similarity=-0.057 Sum_probs=24.9
Q ss_pred HHhcCCCHHHHHHHhcccCCC-----cHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043608 180 MYTKFDRILDARNVFSGIARK-----DVTSWGSMIAAFSKLGYELEALCHFNEML 229 (579)
Q Consensus 180 ~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 229 (579)
-+.+.+.+++|+..-+..... -...+...|..+...|++++|-...-.|.
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 344455555555555444332 11244555555555566655555554443
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.61 E-value=6.6 Score=32.64 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh--HHHHHHHHHhccCChHHHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI--TFNDVMGACAKMASLEMVTQLHCYITK 429 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~ 429 (579)
.+..+...|++.|+.+.|.+.|.++.+....+... .+..+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46667777888888888888888877765444432 345566667777777777777766653
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.50 E-value=3.1 Score=37.12 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHhHHHHHH
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLA-----SQIKPDHITFNDVM 408 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~l~ 408 (579)
++..++..+...|+.+.+.+.++++ -.+-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4556677777777777777777776 3334667788888888888888888888877654 46677666555444
Q ss_pred HH
Q 043608 409 GA 410 (579)
Q Consensus 409 ~~ 410 (579)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.41 E-value=14 Score=33.65 Aligned_cols=93 Identities=15% Similarity=0.072 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhC--------CCCCCh-----HHHHHHHHHhhcccchh---hHHHHHHHHHHcCC
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDR--------ELLPDG-----LTVHSLLCACIGRLTLY---QGMQVHSYIIKMGF 330 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~ 330 (579)
|+.-...+.+..+++.|..++++..+- ...|+. .++..++.++...+..+ +|..+++.+....
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~- 117 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY- 117 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-
Confidence 333333333333777777766654332 122332 23444555555554433 3444444443322
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
+..+.++-.-++.+.+.++.+.+.+.+.+|
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 223344444555555566666666666665
No 283
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=13 Score=33.30 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=92.3
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-CChhhH---HHHHHHHHhcCCcH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-PDVVSW---SSLILGYAQFGCGD 484 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~---~~l~~~~~~~~~~~ 484 (579)
......|++..|...|+........ +....-.+.++|...|+.+.|..++..+.. ....-+ ..-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445677888888888877765433 345566788889999999999999998873 111122 22344555555555
Q ss_pred HHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhH
Q 043608 485 EALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (579)
+...+-++.-. .| |...-..+...+...|+.+.|.+.+=.+.++..-.-|...-..|+..+.--|.-+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555555544 35 55566677788888899999888655555442222345566677777776664333
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.39 E-value=4.1 Score=39.09 Aligned_cols=64 Identities=8% Similarity=0.202 Sum_probs=50.8
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
..+=..+..++-+.|+.++|.+.+++|.+.+...-...+...|+.++...+.+.++..++.+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3344457777889999999999999998753222234477889999999999999999999984
No 285
>PRK11906 transcriptional regulator; Provisional
Probab=90.37 E-value=9.5 Score=36.58 Aligned_cols=157 Identities=12% Similarity=0.075 Sum_probs=102.6
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHHC-CCCCcH-hHHHHHHHHHhc---------cCChHHHHHHHHHHH
Q 043608 367 VSW--NSIIAACLQH-----NQAEELFRLFSRMLAS-QIKPDH-ITFNDVMGACAK---------MASLEMVTQLHCYIT 428 (579)
Q Consensus 367 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~~-~~~p~~-~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 428 (579)
..| ..++.+.... ...+.|..+|.+.... .+.|+. ..|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5566665442 2466788899998722 245664 445555444322 123445666666666
Q ss_pred HcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh--
Q 043608 429 KTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV-- 503 (579)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-- 503 (579)
+.+ +.|+.....+..+..-.++++.|...|++... || ...|........-.|+.++|.+.+++..+. .|...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHH
Confidence 665 34777777788878888999999999998874 55 345666666677899999999999997774 56533
Q ss_pred -HHHHHHHHhhccCchHHHHHHHHH
Q 043608 504 -TLVGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 504 -~~~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
.....+..|+.. ..+.|+.++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 333444466654 46777776543
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.34 E-value=2.4 Score=37.77 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
++..++..+...|+.+.+.+.++++.. -+...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 444455555555555555555555442 244455555555555555555555555544
No 287
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.19 E-value=19 Score=34.87 Aligned_cols=109 Identities=11% Similarity=0.006 Sum_probs=79.0
Q ss_pred HHHHHHHhhCCCCChhhH-HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh--ccCchHHHHHHHHHHH
Q 043608 453 GSARKLFNFMENPDVVSW-SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS--HVGLVEEGLHLYRIME 529 (579)
Q Consensus 453 ~~A~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 529 (579)
+.....+..+..++..++ +.++.-+.+.|-.++|...+..+... .+|+...|..++..-. ..-+...+..+++.+.
T Consensus 445 ~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 445 DLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 334455556666777765 45777778889999999999999886 4566777777776532 1223788899999999
Q ss_pred HhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 530 NEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+| -++..|...+..=...|..+.+-.++.+.
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
Confidence 9888 56667777766666888888877776655
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.17 E-value=5.3 Score=32.05 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=24.1
Q ss_pred HcCCHHHHHHHHhhCC--CCChhhHHHH-HHHHHhcCCcHHHHHHHHHHHhC
Q 043608 448 KCGSLGSARKLFNFME--NPDVVSWSSL-ILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~--~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
+.++.+++..++..+. +|.......+ ...+...|++++|+.+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555443 3433222221 23345666666666666665543
No 289
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.99 E-value=26 Score=36.25 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCC
Q 043608 71 VLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150 (579)
Q Consensus 71 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 150 (579)
..-...+..+.+.+++......+..- ..+...-.....+....|+.++|.+..+.+=-.| ...+.....++..+.+.|
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 34444555566677777777733222 2344444556666777777777776666665544 223444555555544433
No 290
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.92 E-value=1.1 Score=31.85 Aligned_cols=61 Identities=15% Similarity=0.284 Sum_probs=43.9
Q ss_pred cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVV 545 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 545 (579)
.-++.+-+..+....+-|++.....-+++|-+.+|+..|.++++-.+.+-+ .+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 345666677777777888888888888888888888888888887775422 2344555544
No 291
>PRK09687 putative lyase; Provisional
Probab=89.90 E-value=15 Score=33.34 Aligned_cols=145 Identities=7% Similarity=-0.040 Sum_probs=56.3
Q ss_pred CChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCCh----hhHHHHHHHHHHCCCCCCcccHHHHH
Q 043608 68 PDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQE----NDAIKLYIQMLQSGVMPGQFTFGSII 143 (579)
Q Consensus 68 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~g~~p~~~~~~~li 143 (579)
++.......+..+...|..+-...+..-...+|...-...+.++.+.|+. +++...+..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444444444444332222222222233333333444444444442 3455555555332 33444444444
Q ss_pred HHhcCCCcchh--HHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHh
Q 043608 144 KACSGLGSVCL--GRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSK 214 (579)
Q Consensus 144 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 214 (579)
.++...+.... -.+....+...-..++..+....+.++.+.++.+....+..-+..++...-...+.++.+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 44433321110 111222222222223445555555555555553333333333333444333333444443
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.52 E-value=19 Score=34.04 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=43.5
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC---ChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP---NLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-+..+-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777778888888888888888877643222 223333445556667777888887777765
No 293
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.36 E-value=9.1 Score=30.11 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=38.4
Q ss_pred HHhcCChHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHh
Q 043608 344 YAKCSVLCNALLVFKELGKN-----ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACA 412 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 412 (579)
..+.|++++|.+.|+.+..+ -....--.++.+|.+.+++++|...+++.++....-...-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34566677777777666211 1233445566677777777777777777766542222233444444443
No 294
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.85 E-value=23 Score=34.01 Aligned_cols=119 Identities=11% Similarity=0.026 Sum_probs=64.0
Q ss_pred hcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHH
Q 043608 46 SSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIK 122 (579)
Q Consensus 46 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 122 (579)
...|++..|-+-+...+... +.++.........+...|+++.+...+..... ....+...+++...+.|+++.|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34456555544333333222 22333333333345567888888777766553 344566677777777788888888
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 123 LYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 123 ~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
.-+-|....+. ++..........-..|-++++.-.++++...+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 87777765543 22222111122223345666666666665544
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=4.8 Score=39.49 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=79.4
Q ss_pred cCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 83 CGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
.|+++.|..++..++++ .-+.+.+.+-++|-.++|+++- +|...- .....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 46666666666555532 2233444444555555554432 121111 11223445666665554332
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHH
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG 242 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 242 (579)
.+..-|..|.++....|++..|.+.|.+.. .|..|+-.+...|+-+....+-....+.|.
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~--------- 723 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGK--------- 723 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhcc---------
Confidence 234456666666666666666666665433 245555556666665555555555555542
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 043608 243 SVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEM 290 (579)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 290 (579)
.|...-++...|+++++.+++..-
T Consensus 724 ------------------------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ------------------------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------------------------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233445677788999888887653
No 296
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.43 E-value=1 Score=32.41 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
+..+-+..+....+-|++......+++|-+.+|+..|.++|+.++.+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 56666777777788899999999999999999999999999988875 3333446766544
No 297
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.31 E-value=34 Score=35.39 Aligned_cols=175 Identities=8% Similarity=0.024 Sum_probs=80.6
Q ss_pred hhhHHHHHHH-hCCCCC--hhHHHHHHHHHH-ccCChhhHHHhhcCCC----CCCee-----ehhHHhhhhhcCCChhhH
Q 043608 54 GRKVHDHILL-SKCQPD--VVLQNHILNMYG-KCGSLEDARMGFDKMP----QRNVV-----SWTAMIAGCSQNYQENDA 120 (579)
Q Consensus 54 a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~----~~~~~-----~~~~l~~~~~~~~~~~~a 120 (579)
|+..++.+.+ ..++|. ..++-.+...+. ...+++.|+..+++.. +++.. .-..+++.+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555555553 222332 234445555554 4566777777666543 11111 1223344454444444 6
Q ss_pred HHHHHHHHHCCCC----CCcccHHHH-HHHhcCCCcchhHHHHHHHHHHhc---cCCChhHHHHHHHHHh--cCCCHHHH
Q 043608 121 IKLYIQMLQSGVM----PGQFTFGSI-IKACSGLGSVCLGRQLHAHVIKSE---HGSHLIAQNALIAMYT--KFDRILDA 190 (579)
Q Consensus 121 ~~~~~~~~~~g~~----p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a 190 (579)
...+++.++.--. +-...|..+ +..+...++...|.+.++.+.... ..+...++-.++.+.. ..+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 6666665543211 111222222 222222367777777776665533 2233333333333333 23333444
Q ss_pred HHHhcccC-------------CCcHhhHHHHHHHH--HhcCChHHHHHHHHHHH
Q 043608 191 RNVFSGIA-------------RKDVTSWGSMIAAF--SKLGYELEALCHFNEML 229 (579)
Q Consensus 191 ~~~~~~~~-------------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~ 229 (579)
.+.++++. .+...+|..+++.+ ...|+++.+.+.++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44433321 11334566666544 46777777776666654
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.14 E-value=3.2 Score=29.70 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=16.0
Q ss_pred CCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 533 GIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.|++.+..+-++++.|.+|+..|.++++-+
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44455555555555555555555555555433
No 299
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.13 E-value=2.7 Score=30.41 Aligned_cols=32 Identities=6% Similarity=0.086 Sum_probs=19.2
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
|++....+.+++|.+.+++..|+++|+-.+.+
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 66666666666676777777777776666543
No 300
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.94 E-value=17 Score=31.51 Aligned_cols=214 Identities=16% Similarity=0.082 Sum_probs=94.6
Q ss_pred chhhHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCChHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 314 TLYQGMQVHSYIIKMGFDS-NVPVCNAILTMYAKCSVLCNALLVFKELG----KNADSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
....+...+.......... ...........+...+++..+...+.... .......+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344444444444332221 23444555555556666666655555442 122333444455555555556666666
Q ss_pred HHHHHHCCCCCcHhHHHHHHH-HHhccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-
Q 043608 389 FSRMLASQIKPDHITFNDVMG-ACAKMASLEMVTQLHCYITKTGL--AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN- 464 (579)
Q Consensus 389 ~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 464 (579)
+.........+. ........ .+...|+++.+...+........ ......+......+...++.+.+...+....+
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666555432221 11111122 45555666666666655533111 01122222222334444555555555554442
Q ss_pred --C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 465 --P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 465 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
. ....+..+...+...++++.|...+...... .|+ ...+..+...+...|..+.+...+.+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1333444445555555555555555555543 222 22222333333344445555555554443
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.58 E-value=40 Score=35.36 Aligned_cols=221 Identities=16% Similarity=0.077 Sum_probs=118.4
Q ss_pred HHHhcCChHHHHHHHHHc---CCCCChh-------hHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCcHhHHHHH
Q 043608 343 MYAKCSVLCNALLVFKEL---GKNADSV-------SWNSIIAA-CLQHNQAEELFRLFSRMLAS----QIKPDHITFNDV 407 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~---~~~~~~~-------~~~~l~~~-~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l 407 (579)
.....+++.+|..+..++ -..|+.. .|+.+-.. ....|+++++.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 334567777777777665 1111111 23433322 23467888888887766543 123344455566
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH-----HHHHHcCCHHHH--HHHHhhCC-----C-----CChhhH
Q 043608 408 MGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM-----DIYIKCGSLGSA--RKLFNFME-----N-----PDVVSW 470 (579)
Q Consensus 408 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A--~~~~~~~~-----~-----~~~~~~ 470 (579)
..+..-.|++++|..+.....+..-..+...+.... ..+...|+...+ +..|.... + +-...+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 677777888999888887776553344444443332 224455633322 22222222 1 122344
Q ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHhCCCCCChhH--HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH----H
Q 043608 471 SSLILGYAQF-GCGDEALKLFTRMRSLGVSPNLVT--LVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS----C 543 (579)
Q Consensus 471 ~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~ 543 (579)
..+..++.+. +.-.++..-++--......|-... +..|+......|+.++|...++++..- ...+...++. .
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~ 662 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHH
Confidence 4455555541 122222222333223222232222 337788888999999999999999875 3333322221 1
Q ss_pred HH--HHHHhcCChhHHHHHHHhh
Q 043608 544 VV--DLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 544 l~--~~~~~~g~~~~A~~~~~~~ 564 (579)
.+ ......||.++|..++.+-
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhc
Confidence 22 2234778999998888774
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.45 E-value=36 Score=34.66 Aligned_cols=113 Identities=11% Similarity=-0.040 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHCCCCCCcccHHH--HHHH-hcCCCcchhHHHHHHHHHH-------hccCCChhHHHHHHHHHhcCC-
Q 043608 117 ENDAIKLYIQMLQSGVMPGQFTFGS--IIKA-CSGLGSVCLGRQLHAHVIK-------SEHGSHLIAQNALIAMYTKFD- 185 (579)
Q Consensus 117 ~~~a~~~~~~~~~~g~~p~~~~~~~--li~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g- 185 (579)
...|.+.++...+.|.. ....... ...+ .....+.+.|..+++.+.+ .| .......+..+|.+-.
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45788888888777622 1111112 2223 4466788888888888876 44 2233444555555432
Q ss_pred ----CHHHHHHHhcccCCC-cHhhHHHHHHHHHh---cCChHHHHHHHHHHHhcCC
Q 043608 186 ----RILDARNVFSGIARK-DVTSWGSMIAAFSK---LGYELEALCHFNEMLHHGA 233 (579)
Q Consensus 186 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~ 233 (579)
+.+.|..++...-.. ++..--.+...+.. ..+...|.++|....+.|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 455566666554332 11111112222211 2345677777777777663
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.19 E-value=1.3 Score=24.49 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
|..+...|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444555555555555555555544
No 304
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=38 Score=34.64 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHcCCHHHHHHHHhhCCC-CChhh-H---HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 043608 445 IYIKCGSLGSARKLFNFMEN-PDVVS-W---SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~-~~~~~-~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 519 (579)
++..-|+.++|..+.+++.. .|+.. | -++..+|+-.|+.....+++.-.+.. +..|..-...+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 34455677788888888773 34332 1 23456777888877777777665553 3445666666666777778888
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCC
Q 043608 520 EGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDA 568 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 568 (579)
....+.+-+.+.++.....-+--.|.-+|+-.| ..+|..+++.|-..|
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSDP 636 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcCh
Confidence 888888877765433333334445566666666 478888888885444
No 305
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.95 E-value=4.3 Score=29.25 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=59.0
Q ss_pred hhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHH
Q 043608 50 SLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQ 129 (579)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (579)
.-++|..+-+.+...+ .....+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 3566777777766544 2233333344566778999999999999999999999887765 356777777777777777
Q ss_pred CCCCCCcccH
Q 043608 130 SGVMPGQFTF 139 (579)
Q Consensus 130 ~g~~p~~~~~ 139 (579)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 76 4443333
No 306
>PRK09687 putative lyase; Provisional
Probab=86.87 E-value=24 Score=32.05 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC-CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFG-CGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
+..+-...+.++++.++.+....+..-+.++|...-...+.++.+.+ +...+...+..+.. .++...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44555555666666665433333333344455544444455555442 23455555555553 345555555666666
Q ss_pred ccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc-CCCChh
Q 043608 514 HVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA-CDADIV 571 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 571 (579)
+.|+ ..|...+-...+. + + .....+.++..-|+ ++|...+.++- ..||..
T Consensus 218 ~~~~-~~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 218 LRKD-KRVLSVLIKELKK-G---T--VGDLIIEAAGELGD-KTLLPVLDTLLYKFDDNE 268 (280)
T ss_pred ccCC-hhHHHHHHHHHcC-C---c--hHHHHHHHHHhcCC-HhHHHHHHHHHhhCCChh
Confidence 6666 3444444444432 1 1 23456666666666 35666666662 244543
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.71 E-value=0.71 Score=25.49 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=11.5
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHH
Q 043608 505 LVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 505 ~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+..+...+...|++++|++.+++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444445555555555555444
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.51 E-value=21 Score=35.32 Aligned_cols=85 Identities=19% Similarity=0.077 Sum_probs=47.9
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
.+..-|..|.++....+++..|.+.|..... +..|+-.+...|+-+....+-....+.|. .|...
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF 728 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAF 728 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHH
Confidence 4455577777777777777777777665543 33455555555555544444444444442 12233
Q ss_pred HHHHhcCChHHHHHHHHHcC
Q 043608 342 TMYAKCSVLCNALLVFKELG 361 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~ 361 (579)
.+|...|+++++.+++.+-+
T Consensus 729 ~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHcCCHHHHHHHHHhcC
Confidence 34555666666666665543
No 309
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.39 E-value=13 Score=34.22 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CcHhHHHHHHHHHhccCChHHHHHHHHHHH----HcCCCC-c----h
Q 043608 371 SIIAACLQHNQAEELFRLFSRMLASQIK-----PDHITFNDVMGACAKMASLEMVTQLHCYIT----KTGLAF-D----V 436 (579)
Q Consensus 371 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~----~ 436 (579)
++..++...+.++++++.|+...+--.. .....+..+-..+....++++|.-+..+.. ..++.. + .
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3445555556666666666655432111 112345555666666666666665544433 222211 1 0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhh----HHHHHHHHHhcCCcHHHHHHHHHH
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDVVS----WSSLILGYAQFGCGDEALKLFTRM 493 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m 493 (579)
...-.+.-++...|.+..|.+..++..+ -|..+ ...+.+.|...|+.+.|+.-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1112233345566666666666655542 23222 234555666777777766666553
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.29 E-value=34 Score=33.28 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=43.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
|....-+++..+.....+.-+..+-.+|..-| -+...|..++++|... ..+.-..+|+++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344445555555555555555555555542 3444455555555554 334445555555544432 3333333444
Q ss_pred HHHHcCCHHHHHHHHhhC
Q 043608 445 IYIKCGSLGSARKLFNFM 462 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~ 462 (579)
.|.+ ++.+.+..+|.++
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 4433 4444444444443
No 311
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.53 E-value=3.4 Score=34.83 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----cchhHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT----REHCSCV 544 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 544 (579)
+.+.-+..+.+.++.++++...++-++.+ +.|..+-..++..++-.|++++|..-++-.-. +.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 34556778889999999999998887763 33555777888899999999999988876653 3444 3355555
Q ss_pred HHH
Q 043608 545 VDL 547 (579)
Q Consensus 545 ~~~ 547 (579)
+++
T Consensus 79 ir~ 81 (273)
T COG4455 79 IRC 81 (273)
T ss_pred HHH
Confidence 544
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.42 E-value=1.3 Score=22.74 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 043608 543 CVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~ 562 (579)
.+...+...|+.++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 45555566666666665554
No 313
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.40 E-value=19 Score=29.44 Aligned_cols=45 Identities=11% Similarity=0.092 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHH
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDE 485 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 485 (579)
.+++.+...|++-+|.++.......+......++.+-.+.+|...
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 344444555555555555544333322333333444444444333
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.26 E-value=0.97 Score=25.22 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=9.8
Q ss_pred hhHHHHHHHHhhccCchHHH
Q 043608 502 LVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a 521 (579)
...|..+...+...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555444
No 315
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.02 E-value=6.4 Score=35.24 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=72.9
Q ss_pred HhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC-CCe-----eehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCc
Q 043608 63 LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ-RNV-----VSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQ 136 (579)
Q Consensus 63 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 136 (579)
..|.+....+...++..-....+++++...+=++.. |+. .+-...++.+. .-++++++.++..-++-|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 345455555666666665566788888877655552 221 12223333333 45778999999999999999999
Q ss_pred ccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 137 FTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 137 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
++++.+|..+.+.++...|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877654
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.89 E-value=2 Score=23.64 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.|..+...+...|++++|.+.+++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777788888888888888887764
No 317
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.88 E-value=13 Score=27.01 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 152 VCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
-++|..+-+.+...+.. ...+--.-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34444444444433321 22222334556788999999999999999899999887765 4677778888888888888
Q ss_pred C
Q 043608 232 G 232 (579)
Q Consensus 232 ~ 232 (579)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 7
No 318
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.30 E-value=8.9 Score=31.86 Aligned_cols=87 Identities=9% Similarity=-0.007 Sum_probs=44.2
Q ss_pred hhcchhhhhhhhHHHHHHHhCCCCC--hhHHHHHHHHHHccCChhhHHHhhcCCCCCCeee--hhHHhhhhhcCCChhhH
Q 043608 45 CSSLRSLQLGRKVHDHILLSKCQPD--VVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVS--WTAMIAGCSQNYQENDA 120 (579)
Q Consensus 45 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a 120 (579)
+...+++++|...++..+......+ ..+--.|.......|.+++|+.+++....++-.+ ...-.+.+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4555666666666666553211111 1122233444555666666666666655543222 12223345666666666
Q ss_pred HHHHHHHHHCC
Q 043608 121 IKLYIQMLQSG 131 (579)
Q Consensus 121 ~~~~~~~~~~g 131 (579)
..-|+...+.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 66666666553
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.96 E-value=15 Score=33.02 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=65.0
Q ss_pred CCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhH
Q 043608 329 GFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSV-----SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHIT 403 (579)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 403 (579)
|.+.+..+...++..-....++++++..+-.+...|+.. +-...+.. +..-++++++.++..=+..|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 334444445555555555666777777666554333321 11122222 233456788888888888888899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHc
Q 043608 404 FNDVMGACAKMASLEMVTQLHCYITKT 430 (579)
Q Consensus 404 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 430 (579)
++.+|+.+.+.+++..|.++...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999888888887766643
No 320
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.74 E-value=32 Score=30.81 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=21.4
Q ss_pred CChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhH
Q 043608 169 SHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSW 205 (579)
Q Consensus 169 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 205 (579)
-|+.....+...|.+.|++.+|+..|-.-..++...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 3556677777777888888777776654444444333
No 321
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=83.64 E-value=28 Score=30.07 Aligned_cols=193 Identities=18% Similarity=0.094 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH-
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLAS-QIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD- 444 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 444 (579)
..+......+...+++..+...+...... ........+..........+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 34444445555555555555555554431 1223333444444444455555555555555554332221 11111111
Q ss_pred HHHHcCCHHHHHHHHhhCCCCC------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCc
Q 043608 445 IYIKCGSLGSARKLFNFMENPD------VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGL 517 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 517 (579)
.+...|+++.|...+......+ ...+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 4555555555555555543211 1111122222334455555555555555431 11 23444455555555555
Q ss_pred hHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 518 VEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
++.|...+...... .|+ ...+..+...+...|+.+++...+.+.
T Consensus 218 ~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 218 YEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555532 222 223333333333444455555555444
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.39 E-value=2.6 Score=24.51 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 503 VTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666553
No 323
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.04 E-value=3.5 Score=28.23 Aligned_cols=46 Identities=15% Similarity=0.064 Sum_probs=30.1
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchHHHHHH
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
..++.++|+..|+...+.-..|. -.++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777776533332 22667777777777777776664
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.77 E-value=2.8 Score=24.40 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888888888888887764
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.75 E-value=3 Score=22.62 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHhhccCchHHHHHHHHHHHHh
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344445555555555555555543
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.50 E-value=11 Score=31.68 Aligned_cols=74 Identities=12% Similarity=-0.005 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhh--CCCCCcchhHHHHHHHHhcCChhHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEY--GIIPTREHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 557 (579)
-+.|.+.|-++...+.--++.....|+..|. ..|.+++..++-+..+.. +-.++++.+..|+..|.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3567777777766554434444444444444 567777777777766532 2245677777888888888877776
No 327
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.41 E-value=4.5 Score=22.23 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=14.9
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 504 TLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 504 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555556666666666666665553
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.88 E-value=26 Score=27.80 Aligned_cols=50 Identities=8% Similarity=-0.078 Sum_probs=23.3
Q ss_pred chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC
Q 043608 48 LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ 98 (579)
Q Consensus 48 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 98 (579)
..+++.+..+++.|.-.. |.....-..-...+...|++++|.++|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 455555566655554332 11111111222233455666666666666654
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.18 E-value=1.4 Score=24.01 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=23.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 541 CSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
+-.+..++.+.|++++|.+.++++ ...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 345778899999999999999998 33454
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.09 E-value=9 Score=33.84 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=23.0
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHH
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHIL 62 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 62 (579)
|.++...++|.+++...-.--+. .-+.-+.+...-|-.|.+.+++..+.++-...+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445555555544433222211 111122233333444455555555555544444
No 331
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=79.86 E-value=46 Score=30.00 Aligned_cols=74 Identities=9% Similarity=-0.029 Sum_probs=36.1
Q ss_pred ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043608 312 RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELF 386 (579)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 386 (579)
...+++.....++-.+.+--|++.+...+-.+......|..-.++..+-..+ ....|..++.+++..|+.+-.+
T Consensus 268 e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-HHHhhhHHHHHHhcCChHHHHH
Confidence 3445555555444444433455543333333333333333322222222122 4557888888888888776543
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.82 E-value=18 Score=30.38 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHH---cCCCCchhHHHHHHHHHHHcCCHHHHH
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITK---TGLAFDVFVMNGLMDIYIKCGSLGSAR 456 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~ 456 (579)
+.|.+.|-.+...+.--++.....+...|. ..+.+++.+++-...+ .+-.+|+..+.+|...|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666654444444444444444 5566777777666553 233567777777777777777777664
No 333
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.79 E-value=28 Score=27.56 Aligned_cols=76 Identities=9% Similarity=0.109 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCC---------CCChhhHHHHHHHHHhcCC-cHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFME---------NPDVVSWSSLILGYAQFGC-GDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
|+++.-....+++.-...+++.+. ..+...|++++.+..+..- .--+..+|.-|.+.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444332 1345567777777755544 345667777777777777888888888
Q ss_pred HHhhcc
Q 043608 510 TACSHV 515 (579)
Q Consensus 510 ~~~~~~ 515 (579)
.++.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 777664
No 334
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.71 E-value=31 Score=27.89 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=9.0
Q ss_pred HHhcCChHHHHHHHHHc
Q 043608 344 YAKCSVLCNALLVFKEL 360 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~ 360 (579)
+...|++.+|..+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 34455555555555555
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.51 E-value=10 Score=32.10 Aligned_cols=75 Identities=11% Similarity=-0.022 Sum_probs=47.5
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhC--CCCChhHHHHHHHH
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSK--CQPDVVLQNHILNM 79 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 79 (579)
+.-++.+.+.++..+++...+.-.+ ..|.|...-..++..++-.|++++|..-++..-... ..+...+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3456677777788887777765554 345566667777777777888887777766655433 12334455555543
No 336
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.23 E-value=90 Score=32.97 Aligned_cols=179 Identities=12% Similarity=-0.013 Sum_probs=92.4
Q ss_pred hcCChHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHH-----HHHHhc
Q 043608 346 KCSVLCNALLVFKEL-------GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDV-----MGACAK 413 (579)
Q Consensus 346 ~~~~~~~a~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-----~~~~~~ 413 (579)
..|+++.|.++.+.. ...+.+..+..+..+..-.|++++|..+.++..+.--.-+...+... ...+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 467777777776654 11235566777777888888888888877765543222233222222 223445
Q ss_pred cCChHHHHH--HHHHHHHc-----C-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC------CCCh--hh--HHHHHH
Q 043608 414 MASLEMVTQ--LHCYITKT-----G-LAFDVFVMNGLMDIYIKCGSLGSARKLFNFME------NPDV--VS--WSSLIL 475 (579)
Q Consensus 414 ~~~~~~a~~--~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~--~~--~~~l~~ 475 (579)
.|....+.. .+...... . ..+-..++..+..++.+ .+.+..-..... .|.. .. +..|+.
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 563332222 22222211 0 01223344445555544 333222211111 1221 11 235677
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCCCC----ChhHHHHHHHH--hhccCchHHHHHHHHH
Q 043608 476 GYAQFGCGDEALKLFTRMRSLGVSP----NLVTLVGVLTA--CSHVGLVEEGLHLYRI 527 (579)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 527 (579)
.....|+.++|...++++......+ +..+-...+.. -...|+.+.+...+.+
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 7788999999999988887543333 22222222222 3467888887777665
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.12 E-value=20 Score=30.05 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=55.3
Q ss_pred HHHcCCHHHHHHHHhhCCC--C------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccC
Q 043608 446 YIKCGSLGSARKLFNFMEN--P------DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVG 516 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~--~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 516 (579)
+.+.|++++|..-|..... | ..+.|..-..++.+.+.++.|+.--.+.++.+ |+ ...+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhh
Confidence 6677888888877776653 2 13345555566777888888887777777643 32 233334455677777
Q ss_pred chHHHHHHHHHHHHh
Q 043608 517 LVEEGLHLYRIMENE 531 (579)
Q Consensus 517 ~~~~a~~~~~~~~~~ 531 (579)
.+++|++=|..+...
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888888777753
No 338
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.03 E-value=9.7 Score=32.26 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=19.2
Q ss_pred CCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 499 SPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 499 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.|++.+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666666665553
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.51 E-value=6.4 Score=21.51 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555544
No 340
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.24 E-value=14 Score=27.24 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=51.4
Q ss_pred hhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHH
Q 043608 50 SLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQ 129 (579)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (579)
..++|..+.+.+...+ .....+--..+..+...|++++|+..=.....||...|-+|-. .+.|--+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 4678888888887766 3333344444566778899999977666666788888877654 456777788888887766
Q ss_pred CC
Q 043608 130 SG 131 (579)
Q Consensus 130 ~g 131 (579)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 65
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.62 E-value=85 Score=33.57 Aligned_cols=37 Identities=5% Similarity=0.096 Sum_probs=22.1
Q ss_pred hhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHh
Q 043608 110 GCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKAC 146 (579)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 146 (579)
.|+.....+-+...++.+....-.++..-.+.++..|
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 3555666677777777776655444555555555444
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.38 E-value=6.5 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=20.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCC
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRE 294 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g 294 (579)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36678888888888888888888654
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.30 E-value=8.3 Score=21.06 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=15.4
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 504 TLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 504 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+|..+...+...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555666666666666665553
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.21 E-value=38 Score=30.19 Aligned_cols=89 Identities=10% Similarity=-0.007 Sum_probs=59.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh--
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK-- 346 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 346 (579)
.=|.++...++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-....+..-.-+..-|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347889999999999886655543322333445555666678888888888888877765433344457776666544
Q ss_pred ---cCChHHHHHHH
Q 043608 347 ---CSVLCNALLVF 357 (579)
Q Consensus 347 ---~~~~~~a~~~~ 357 (579)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 57777777776
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.94 E-value=7.8 Score=23.22 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=11.8
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHh
Q 043608 473 LILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555544
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.38 E-value=6.8 Score=35.51 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=31.3
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHH
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILL 63 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 63 (579)
.|.++|++++|++-|...... .+.|+.++..-..+|.+...+..|..-.+..+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355666666666666655542 333555665556666666666665555555543
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.01 E-value=19 Score=27.43 Aligned_cols=70 Identities=14% Similarity=0.261 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+-+..+...++-|++.....-+++|-+.+|+..|.++|+-++.+ ..+....|..++ ++-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHHHh
Confidence 34455566667778899999999999999999999999999988764 333333444333 4455566666
Q ss_pred c
Q 043608 565 A 565 (579)
Q Consensus 565 ~ 565 (579)
+
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 4
No 348
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.76 E-value=24 Score=24.92 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=29.8
Q ss_pred cCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHH
Q 043608 183 KFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEAL 222 (579)
Q Consensus 183 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 222 (579)
..|+.+.|.+++..++ +.+..|...+.++.+.|+-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5577888888888888 77778888888888877765553
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.72 E-value=1.2e+02 Score=31.07 Aligned_cols=153 Identities=9% Similarity=0.087 Sum_probs=85.0
Q ss_pred HHcCCChHHHHHHHHHHHh-------CCCCCChHHHHHHHHHhhcc----c-chhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 274 VASHSNANEAMSLFSEMRD-------RELLPDGLTVHSLLCACIGR----L-TLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
+....+.+.|+.+|+.+.+ .|.++ ....+-.+|.+. . +.+.|..++....+.|.+ +....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 4467789999999998876 55332 333444444442 2 567788888888887743 333222222
Q ss_pred HHHHh-cCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC
Q 043608 342 TMYAK-CSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS 416 (579)
Q Consensus 342 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 416 (579)
..... ..+...|.++|......-.+.++-.+..+|.. ..+...|..++++..+.| .|....-...+..+.. +.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 22222 24567888888776433344444444333332 346777888888887777 3332222222333333 56
Q ss_pred hHHHHHHHHHHHHcCC
Q 043608 417 LEMVTQLHCYITKTGL 432 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~ 432 (579)
.+.+.-.+..+...|.
T Consensus 413 ~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 413 YDTALALYLYLAELGY 428 (552)
T ss_pred ccHHHHHHHHHHHhhh
Confidence 6666655555555443
No 350
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.72 E-value=10 Score=31.60 Aligned_cols=86 Identities=15% Similarity=0.023 Sum_probs=54.0
Q ss_pred HhhcchhhhhhhhHHHHHHHhCCCCC-----hhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhh---hhhcCC
Q 043608 44 ACSSLRSLQLGRKVHDHILLSKCQPD-----VVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIA---GCSQNY 115 (579)
Q Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~ 115 (579)
-+...|++.+|..-|...+..- ++. ...|..-..++.+.+.++.|++-.....+-++.--.+|.+ +|-+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3556677777777777776543 222 2344455566777777777777666666544433333433 466667
Q ss_pred ChhhHHHHHHHHHHC
Q 043608 116 QENDAIKLYIQMLQS 130 (579)
Q Consensus 116 ~~~~a~~~~~~~~~~ 130 (579)
.++.|++=|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 788888888887765
No 351
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=72.48 E-value=1.2e+02 Score=31.12 Aligned_cols=59 Identities=8% Similarity=0.192 Sum_probs=20.4
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHh
Q 043608 400 DHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFN 460 (579)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 460 (579)
+.....-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.+.|+......+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 333444555555555555555555554432211 11234444445555555554444433
No 352
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.93 E-value=1.3e+02 Score=31.24 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHccCChhhHHHhhcCCC---CCCeeehhHHhhhhhcCCC-------hhhHHHHHHHHHHC
Q 043608 71 VLQNHILNMYGKCGSLEDARMGFDKMP---QRNVVSWTAMIAGCSQNYQ-------ENDAIKLYIQMLQS 130 (579)
Q Consensus 71 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 130 (579)
..|- +|-.|.|+|++++|.++..+.. +.....+-..+..|....+ -++...-|++....
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3443 4566779999999999993332 2334456666666665422 23445555555544
No 353
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.82 E-value=1e+02 Score=30.13 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHH-HHHHccCChhhHHHhh
Q 043608 15 YNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHIL-NMYGKCGSLEDARMGF 93 (579)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~ 93 (579)
..+...+|+....+ ++.|+..|...+..|.+.+.+.+...+|.+|+... +.++..|-.-. .-|...-.++.|..+|
T Consensus 87 ~~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 45667778877764 67799999999998888888999999999999755 44444443333 2233444599999999
Q ss_pred cCCCC
Q 043608 94 DKMPQ 98 (579)
Q Consensus 94 ~~~~~ 98 (579)
.+-.+
T Consensus 164 lrgLR 168 (568)
T KOG2396|consen 164 LRGLR 168 (568)
T ss_pred HHHhh
Confidence 88764
No 354
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.45 E-value=73 Score=28.18 Aligned_cols=117 Identities=9% Similarity=0.034 Sum_probs=55.5
Q ss_pred ccchhhHHHHHHHHHHcCCCCCchh---HHHHHHHHHhcCChHHHHHHHHHc--------CCCCChhhHHHHHHHHHhcC
Q 043608 312 RLTLYQGMQVHSYIIKMGFDSNVPV---CNAILTMYAKCSVLCNALLVFKEL--------GKNADSVSWNSIIAACLQHN 380 (579)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~l~~~~~~~~ 380 (579)
...+++|+.-|....+........- ...++....+.|++++....++++ ...-+..+.|.++.-.....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456666666666665533333222 233455566666666666666554 12223444555555444444
Q ss_pred CHHHHHHHHHHHHH----C-CCCCcHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 381 QAEELFRLFSRMLA----S-QIKPDHITFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 381 ~~~~a~~~~~~m~~----~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
+.+-....|+.-.+ . +-+.=..|-..+-..+...+.+.+...+++++.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 44444443332211 1 001111233344455555556666666665554
No 355
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.75 E-value=1.4e+02 Score=31.07 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=77.7
Q ss_pred hcCChhHHHHHHHHhhhhcCCCCCcc-----cHHHHHHHhhcchhhhhhhhHHHHHHHhCCC----CChhHHHHH-HHHH
Q 043608 11 KQNLYNEALVAYDFSQNNTNIRIRPS-----TYAGLISACSSLRSLQLGRKVHDHILLSKCQ----PDVVLQNHI-LNMY 80 (579)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~ 80 (579)
...+.+.|...+++.... ..+++.. .-..++..+.+.+... |...++..++.--. +-...+..+ +..+
T Consensus 72 eT~n~~~Ae~~L~k~~~l-~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~ 149 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILL-CERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA 149 (608)
T ss_pred HcCCHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 456777888888766554 2222221 1223444455554444 77777776643212 112233333 2222
Q ss_pred HccCChhhHHHhhcCCCC-------CCeeehhHHhhhh--hcCCChhhHHHHHHHHHHCCC---------CCCcccHHHH
Q 043608 81 GKCGSLEDARMGFDKMPQ-------RNVVSWTAMIAGC--SQNYQENDAIKLYIQMLQSGV---------MPGQFTFGSI 142 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~g~---------~p~~~~~~~l 142 (579)
...+++..|.+.++.+.. |....+-.++.+. .+.+..+++.+.++++..... .|...+|..+
T Consensus 150 ~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll 229 (608)
T PF10345_consen 150 LQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL 229 (608)
T ss_pred HhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 233688888887766652 2222333333332 345666777777776643221 2234456666
Q ss_pred HHHhc--CCCcchhHHHHHHHHHH
Q 043608 143 IKACS--GLGSVCLGRQLHAHVIK 164 (579)
Q Consensus 143 i~~~~--~~~~~~~a~~~~~~~~~ 164 (579)
++.++ ..|+++.+.+.++++.+
T Consensus 230 l~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 230 LDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66443 55666666666655543
No 356
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.60 E-value=8 Score=24.33 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=18.5
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhCCCCCcch
Q 043608 507 GVLTACSHVGLVEEGLHLYRIMENEYGIIPTREH 540 (579)
Q Consensus 507 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 540 (579)
.+.-++.+.|++++|.+..+.+.+. .|+..-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~---eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI---EPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH---TTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh---CCCcHH
Confidence 4455667777777777777777643 555443
No 357
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.23 E-value=1.1e+02 Score=29.80 Aligned_cols=210 Identities=10% Similarity=-0.021 Sum_probs=107.8
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChHH--HHHHHHHhhcccchhhHHHHHHHHHHcCCCCCch--hHHHHHHHHHhcC
Q 043608 273 GVASHSNANEAMSLFSEMRDRELLPDGLT--VHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVP--VCNAILTMYAKCS 348 (579)
Q Consensus 273 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 348 (579)
..++.|+.+-+ +.+.+.|..|+... -.+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34456776554 44445677776532 233445555666654 455556666655432 1223455666788
Q ss_pred ChHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHH--HHHHHHHhccCChHHHHHH
Q 043608 349 VLCNALLVFKELGKNA---DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITF--NDVMGACAKMASLEMVTQL 423 (579)
Q Consensus 349 ~~~~a~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~ 423 (579)
+.+.+..+++.-.... +....+ .+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.+..+
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 8888777776432111 111222 33334455655 455555666766654321 1233444566776554444
Q ss_pred HHHHHHcCCCCchhH--HHHHHHHHHHcCCHHHHHHHHhhCCCCChhh---HHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 043608 424 HCYITKTGLAFDVFV--MNGLMDIYIKCGSLGSARKLFNFMENPDVVS---WSSLILGYAQFGCGDEALKLFTRMRSLGV 498 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 498 (579)
+ +.|..++... -...+...+..|+.+-+..+++.-..++... ..+.+...+..|+. ++.+-+.+.|.
T Consensus 155 l----~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~ga 226 (413)
T PHA02875 155 I----DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGA 226 (413)
T ss_pred H----hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCc
Confidence 4 4454333211 1123344556778777777776655544322 12344434455654 34555667787
Q ss_pred CCChh
Q 043608 499 SPNLV 503 (579)
Q Consensus 499 ~p~~~ 503 (579)
.++..
T Consensus 227 d~n~~ 231 (413)
T PHA02875 227 DCNIM 231 (413)
T ss_pred CcchH
Confidence 77643
No 358
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.85 E-value=2.7e+02 Score=33.62 Aligned_cols=279 Identities=11% Similarity=-0.000 Sum_probs=132.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK 346 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (579)
|..+...|...+++|.+.-+...-.. .| .+...|.-....|+++.|...|+.+.+.+ ++....++.+++....
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~ 1495 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLA 1495 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhc
Confidence 44444577777777766665553111 11 12233444556778888888888877765 3335556666666666
Q ss_pred cCChHHHHHHHHHcCCC--CChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHH--HHHHhcc--CChHH
Q 043608 347 CSVLCNALLVFKELGKN--ADSVSWNS-IIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDV--MGACAKM--ASLEM 419 (579)
Q Consensus 347 ~~~~~~a~~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~--~~~~~ 419 (579)
.|.++.+....+..... +....++. =+.+-.+.++++....... +. +..+|... .....+. .+.-.
T Consensus 1496 ~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~ 1568 (2382)
T KOG0890|consen 1496 IQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIA 1568 (2382)
T ss_pred ccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhh
Confidence 67777666666555222 22222322 2334455666666555444 11 11122221 1111111 11111
Q ss_pred HHHHHHHHHHc--------CCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHhcCCcHH
Q 043608 420 VTQLHCYITKT--------GLA-FDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDVVSWSSLILGYAQFGCGDE 485 (579)
Q Consensus 420 a~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 485 (579)
-....+.+++. +.. .-...|..++....-.. .+.-.+.+..... .+...|..-+.--....+..+
T Consensus 1569 ~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~e 1647 (2382)
T KOG0890|consen 1569 TLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKE 1647 (2382)
T ss_pred HHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHh
Confidence 11222222211 111 11233444444333222 1222222222221 112222222211111111111
Q ss_pred H-HHHHHHHHhCCCCCC-----hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHH
Q 043608 486 A-LKLFTRMRSLGVSPN-----LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAED 559 (579)
Q Consensus 486 a-~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 559 (579)
- +.+-+-+......|+ ..+|....+.+-+.|.++.|...+-...+. + -+..+-...+.++..|+...|+.
T Consensus 1648 pILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1648 PILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES-R---LPEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cchHHHHHHHHHHhhccHHHHHH
Confidence 1 111122222212222 457888888888899999998876666543 2 33445566788999999999999
Q ss_pred HHHhh
Q 043608 560 FINQM 564 (579)
Q Consensus 560 ~~~~~ 564 (579)
++++.
T Consensus 1724 ~Lq~~ 1728 (2382)
T KOG0890|consen 1724 VLQEI 1728 (2382)
T ss_pred HHHHH
Confidence 99876
No 359
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.94 E-value=73 Score=26.79 Aligned_cols=54 Identities=9% Similarity=-0.050 Sum_probs=25.8
Q ss_pred HHHHHHcCCHHHHHHHHhhCCCCChhh--HHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 443 MDIYIKCGSLGSARKLFNFMENPDVVS--WSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.+.....|.+++|+..++....++-.. ...-...+...|+-++|..-|++..+.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334445555555555555554443222 222233455555555555555555554
No 360
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=67.67 E-value=78 Score=27.48 Aligned_cols=56 Identities=20% Similarity=0.353 Sum_probs=39.1
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 456 RKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 456 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+|+-..+|.+.....++..|. .+++++|.+++.++-+.|+.|... .+.+.+.+-
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 44555555688887777777655 477999999999999999887543 334444443
No 361
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.46 E-value=1.5e+02 Score=30.36 Aligned_cols=69 Identities=9% Similarity=-0.053 Sum_probs=26.8
Q ss_pred hhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHH
Q 043608 256 FNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYII 326 (579)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 326 (579)
+.+.+-.+...-.-++..|.+.|-.+.+.++.+.+-.+- ....-|...+..+.+.++...+..+.+.+.
T Consensus 397 L~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 397 LPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp GGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred HhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333334455555666667777777777777776554431 122345555555566666555555444443
No 362
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.94 E-value=18 Score=29.77 Aligned_cols=46 Identities=28% Similarity=0.383 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhC-----CCCCCh-hHHHHHHHHhhcc
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSL-----GVSPNL-VTLVGVLTACSHV 515 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~-~~~~~l~~~~~~~ 515 (579)
|...+.-+.+..+..++.+++++..++ .+.|+. .++..+..++...
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 333334444444555555555555432 234543 3555555555443
No 363
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.66 E-value=64 Score=25.66 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=35.2
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC
Q 043608 365 DSVSWNSIIAACLQHNQ-AEELFRLFSRMLASQIKPDHITFNDVMGACAKMA 415 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 415 (579)
+...|.+++.+.....- --.+..+|+-|.+.+.+++..-|..++.++.+..
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 55677777777755444 3346677777777777888888888888776553
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.07 E-value=50 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455566666666666666666666554
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.67 E-value=21 Score=27.17 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcCC--CChhHhhhh
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACD--ADIVVWKSL 576 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l 576 (579)
.+-+..+.. +.+.|++.+...-++++.+.+|+..|.++++-++.| +....|-.+
T Consensus 69 rkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 69 RKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 334444443 489999999999999999999999999999988433 333345443
No 366
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.42 E-value=72 Score=25.46 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=17.2
Q ss_pred HHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043608 344 YAKCSVLCNALLVFKELGKNADSVSWNSIIAACL 377 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 377 (579)
+...|++++|.++|+++...+....|..-+.++|
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 4456666666666666644433333433333333
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.98 E-value=68 Score=25.06 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=28.5
Q ss_pred HHHHHHHHhcC---CcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 471 SSLILGYAQFG---CGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 471 ~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
-.+.+++.+.. +..+.+.+++...+.. .|+ ....-.|.-+|.+.|+++.++++++.+.+
T Consensus 36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 36 FNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444554443 2344555555555421 222 22333444555666666666666665553
No 368
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=63.90 E-value=95 Score=26.65 Aligned_cols=172 Identities=10% Similarity=-0.014 Sum_probs=94.1
Q ss_pred hhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCee-ehhHHhhh--hhcCCChhhHHHHHHHHHHC
Q 043608 54 GRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVV-SWTAMIAG--CSQNYQENDAIKLYIQMLQS 130 (579)
Q Consensus 54 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~--~~~~~~~~~a~~~~~~~~~~ 130 (579)
|.--|.+.+... |.-+.+||-+--.+...|+++.|.+.|+...+-|+. .|..+=++ +---|+++-|.+-+...-+.
T Consensus 84 AR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 84 ARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 333344444332 334678888877788889999999999888875443 44444444 23458888888877777665
Q ss_pred CCCCCc--ccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHH-HHHHHHhcCCCHHHHHHHhcccCCC-------
Q 043608 131 GVMPGQ--FTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQN-ALIAMYTKFDRILDARNVFSGIARK------- 200 (579)
Q Consensus 131 g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~------- 200 (579)
+ +.|+ ..|.-+. -..-++.+|..-+.+-.+ ..|..-|. .++..|...-..+.+.+-.....+.
T Consensus 163 D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~ 235 (297)
T COG4785 163 D-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEH 235 (297)
T ss_pred C-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHH
Confidence 3 1121 1222222 123345555433322111 12222222 1222232222222222222222221
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGA 233 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 233 (579)
-+.+|--+...+...|+.++|..+|+-....++
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 235788888899999999999999998877654
No 369
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=63.84 E-value=50 Score=30.32 Aligned_cols=47 Identities=13% Similarity=-0.060 Sum_probs=21.4
Q ss_pred HhccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHH
Q 043608 411 CAKMASLEMVTQLHCYITKTGLAF-DVFVMNGLMDIYIKCGSLGSARKLF 459 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 459 (579)
|.+.|.+++|...+...... .| ++.++..-..+|.+...+..|+.-.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 44555555555555443322 12 4444444444455554444444433
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.54 E-value=12 Score=25.70 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=37.1
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCCc-chhHHHHHHHHhcCChhHHHHHH
Q 043608 513 SHVGLVEEGLHLYRIMENEYGIIPTR-EHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
..+...++|+..|+...+...-.|+. .++-.|+.+|...|++.+++.+-
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999998763323322 26677889999999999998764
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.39 E-value=31 Score=30.88 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+.....|...|.+.+|.++-++....+ +.+...+..++..+...||--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 333445555566666666555555432 2344455555555555565555555554443
No 372
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.80 E-value=2e+02 Score=30.04 Aligned_cols=115 Identities=7% Similarity=-0.007 Sum_probs=63.8
Q ss_pred cCChHHHHHHHHHcCCC--CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHH
Q 043608 347 CSVLCNALLVFKELGKN--AD----SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMV 420 (579)
Q Consensus 347 ~~~~~~a~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 420 (579)
..+.+.|...+...... -+ ...+..+....+..+...++...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 44567788888765211 11 1234444433444332456666666543321 2333344445555578888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 043608 421 TQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN 464 (579)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 464 (579)
...+..|-... .-...-.--+.+++...|+.++|...|+.+..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777764322 11233333456666668888888888888754
No 373
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.75 E-value=1.5e+02 Score=28.59 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 338 NAILTMYAKCSVLCNALLVFKELGKN--ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
..|+.-|...|+..+|.+..++++.+ .....+.+++.+.-+.++-...+.++++....|+ .|.+.+-.++
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhh
Confidence 45778888899999999999998665 4566788888888888888888888888777653 3444444444
No 374
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.56 E-value=12 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=11.9
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHH
Q 043608 505 LVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 505 ~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+..+...+...|+++.|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 375
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.53 E-value=1.1e+02 Score=27.08 Aligned_cols=250 Identities=13% Similarity=0.122 Sum_probs=136.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC-
Q 043608 215 LGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDR- 293 (579)
Q Consensus 215 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 293 (579)
...+++|+.-|.+..+... ... +..-.+...++....+.+++++..+.|.+|.--
T Consensus 40 e~~p~~Al~sF~kVlelEg---EKg---------------------eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI 95 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEG---EKG---------------------EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYI 95 (440)
T ss_pred ccCHHHHHHHHHHHHhccc---ccc---------------------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4467788888877765521 000 122344556788888999999999988887531
Q ss_pred --CC--CCChHHHHHHHHHhhcccchhhHHHHHHHHHHc-----CCCCCchhHHHHHHHHHhcCChHHHHHHHHHcC--C
Q 043608 294 --EL--LPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKM-----GFDSNVPVCNAILTMYAKCSVLCNALLVFKELG--K 362 (579)
Q Consensus 294 --g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~ 362 (579)
.+ .-+..+.+.++...+...+.+...++++.-.+. +-+.--.+-.-+...|...|++....++++++. +
T Consensus 96 kSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 96 KSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred HHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 11 223456677777766666666655555543321 111122233456677777788888888877761 1
Q ss_pred C-----CC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHhHHHHHHHHH-----hccCChHHHHH-H
Q 043608 363 N-----AD-------SVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPDHITFNDVMGAC-----AKMASLEMVTQ-L 423 (579)
Q Consensus 363 ~-----~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~-----~~~~~~~~a~~-~ 423 (579)
+ .| ...|..-|..|....+-.+...+|++...-. .-|-+ ....+|+-| .+.|.+++|-. +
T Consensus 176 q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 176 QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHH
Confidence 1 01 2246666777777788788888888754432 22333 233445544 35567776554 4
Q ss_pred HHHHH---HcCCCCchhH---HHHHHHHHHHcCC----HHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHH
Q 043608 424 HCYIT---KTGLAFDVFV---MNGLMDIYIKCGS----LGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRM 493 (579)
Q Consensus 424 ~~~~~---~~~~~~~~~~---~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 493 (579)
|+... +.| .|...+ |-.|...+.+.|- ..+|.-+- -+|.....+.++.+|.. +++.+..+++..-
T Consensus 255 FEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAKPyK---NdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 255 FEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK---NDPEILAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred HHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccCCCC---CCHHHHHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 44444 233 222222 2334444444431 11111000 02556667778887754 5566666665543
Q ss_pred H
Q 043608 494 R 494 (579)
Q Consensus 494 ~ 494 (579)
.
T Consensus 330 ~ 330 (440)
T KOG1464|consen 330 R 330 (440)
T ss_pred h
Confidence 3
No 376
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.32 E-value=21 Score=31.65 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=28.3
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhhC----CCCCcchhHHHHHHHHhcCChhHHHHHH
Q 043608 507 GVLTACSHVGLVEEGLHLYRIMENEYG----IIPTREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 507 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
.+..-|...|++++|.++|+.+...+. ..+...+...+..++.+.|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344455566666666666665543321 2223334455555556666666555543
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.17 E-value=62 Score=23.99 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=48.6
Q ss_pred CcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043608 150 GSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEML 229 (579)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 229 (579)
...++|..+.+.+...+. ....+.-.-+..+.+.|++++|...=.....||...|..|.. .+.|--+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345566666666555443 223333344556778899999966555556678777766654 57888888888888887
Q ss_pred hcC
Q 043608 230 HHG 232 (579)
Q Consensus 230 ~~~ 232 (579)
.+|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 776
No 378
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=61.75 E-value=1.4e+02 Score=28.04 Aligned_cols=64 Identities=11% Similarity=0.014 Sum_probs=45.6
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043608 332 SNVPVCNAILTMYAKCSVLCNALLVFKELGKNA------DSVSWNSIIAACLQHNQAEELFRLFSRMLAS 395 (579)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 395 (579)
....++..+...+.+.|.++.|...+..+.... .+...-.-...+...|+..+|+..+++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344567778888888999999988888773321 3334444566677788888998888887763
No 379
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.70 E-value=35 Score=20.91 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=18.7
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 478 AQFGCGDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
.+.|-.+++...+++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455556666666666666666655555444
No 380
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.50 E-value=72 Score=30.85 Aligned_cols=120 Identities=12% Similarity=0.057 Sum_probs=78.1
Q ss_pred HHHHhccCChHHHHH-HHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCc
Q 043608 408 MGACAKMASLEMVTQ-LHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCG 483 (579)
Q Consensus 408 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 483 (579)
|.-....|+.-.|-+ ++..++...-.|+.....+ ..+...|+++.+...+....+ ....+..++++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 344445677666655 4444444443444443333 345677899999888876653 5566778888888889999
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
++|..+-+-|....++ ++.....-....-..|-++++.-.|+++..
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 9999998888876654 333333333334456778888888888764
No 381
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.43 E-value=25 Score=24.86 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=41.0
Q ss_pred hhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHH
Q 043608 54 GRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAI 121 (579)
Q Consensus 54 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (579)
+.++++.+.+.|+ .+......+-..-...|+.+.|.++++.++ ..+..|..++.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4566777776663 333333333332235577788888888877 77777777777777766655443
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.45 E-value=16 Score=23.86 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=11.3
Q ss_pred HHHHHHHhcCChhHHHHHHHhh
Q 043608 543 CVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.++.+|...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455555555555555555554
No 383
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.33 E-value=1.6e+02 Score=28.06 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=44.4
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh-ccCchHHHHHHHHHHHH
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS-HVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 530 (579)
+..+.+.|.+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5667789999999999999998765546777777777765 77788888888887654
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.24 E-value=18 Score=32.56 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=35.0
Q ss_pred CChhh-HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 043608 262 PDLAS-WNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLL 306 (579)
Q Consensus 262 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 306 (579)
|+..+ |+..|+...+.||+++|+.++++.++.|+.--..+|-..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 44444 5789999999999999999999999998776666654433
No 385
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.21 E-value=90 Score=26.98 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHhh
Q 043608 542 SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 542 ~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+.....+.|+.++|.+++.++
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 34555666777777777777777
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.20 E-value=1.2e+02 Score=26.55 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=30.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043608 339 AILTMYAKCSVLCNALLVFKELGKNADSV-SWNSIIAACLQHNQAEELFRLFSRML 393 (579)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~ 393 (579)
.++.++...|+.+.|..+++..+..++.. ....++.. ..++.+.+|+..-+...
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 45566666677777777777765443332 22222333 55566777766655543
No 387
>PRK13342 recombination factor protein RarA; Reviewed
Probab=60.18 E-value=1.7e+02 Score=28.48 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=13.7
Q ss_pred cCChHHHHHHHHHHHhcCC
Q 043608 215 LGYELEALCHFNEMLHHGA 233 (579)
Q Consensus 215 ~~~~~~a~~~~~~m~~~~~ 233 (579)
.++++.|+.++..|.+.|.
T Consensus 243 gsd~~aal~~l~~~l~~G~ 261 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGE 261 (413)
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 4677777777777777765
No 388
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=60.10 E-value=2.7e+02 Score=30.58 Aligned_cols=376 Identities=13% Similarity=0.050 Sum_probs=182.9
Q ss_pred HHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCC
Q 043608 106 AMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFD 185 (579)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 185 (579)
++=+++...+.+++|+..|++.... .+--...|.+..+ ....++++..+.|-+ .
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~----------------~ 533 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFR---------LGITLLEKASEQGDP----------------R 533 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHH---------hhHHHHHHHHhcCCh----------------H
Confidence 3345666777888888888888765 3333445544433 234455555444321 2
Q ss_pred CHHHHHHHhcccCCCc--HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCC
Q 043608 186 RILDARNVFSGIARKD--VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPD 263 (579)
Q Consensus 186 ~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 263 (579)
.+++|+.-|+.+.... +.-|---.-.|-+.|++++-.+.+.-..++-.-.|.-.....-+ .-++.+......
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 607 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL------VYRLHESLYKHR 607 (932)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH------HHHHHHHHHHHH
Confidence 3567777777776532 23444455567778888777777766665532133221111100 000111111122
Q ss_pred hhhHHHHHHHHH---cCCChHHHHHHHHHHHhCC-------CCCChHH-----HHHHHHHhhcccchhhHHHHHHHHHHc
Q 043608 264 LASWNALIAGVA---SHSNANEAMSLFSEMRDRE-------LLPDGLT-----VHSLLCACIGRLTLYQGMQVHSYIIKM 328 (579)
Q Consensus 264 ~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g-------~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~ 328 (579)
..+|.-++-+.. +.-...+-.++|+.+..+- +.+.+.+ +..++.-+. |..----++++.+.+.
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 685 (932)
T PRK13184 608 REALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWS--GFTPFLPELFQRAWDL 685 (932)
T ss_pred HHHHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHh--cCchhhHHHHHHHhhc
Confidence 233333222221 1222233345555554331 1122211 222222111 2222223344443332
Q ss_pred CCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC-------CCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043608 329 GFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN-------ADS--------VSWNSIIAACLQHNQAEELFRLFSRML 393 (579)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~ 393 (579)
++-.......-..+..|.++-+.+....+... .+. ..|-.-+.++....+++++.+.+..
T Consensus 686 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 760 (932)
T PRK13184 686 ---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN-- 760 (932)
T ss_pred ---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh--
Confidence 23345555555567788887776655544211 111 1233334455555566666654433
Q ss_pred HCCCCCcHh--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CC
Q 043608 394 ASQIKPDHI--TFNDVMGACAKMASLEMVTQLHCYITKTGLAFD--VFVMNGLMDIYIKCGSLGSARKLFNFMEN---PD 466 (579)
Q Consensus 394 ~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 466 (579)
++|... .+..++.-+...++.+...++.+.+.+.-.+.. ......-+.+|.-..+++.|.++++.... .+
T Consensus 761 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (932)
T PRK13184 761 ---TDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLD 837 (932)
T ss_pred ---CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhcc
Confidence 233332 344444444555566666666665554433222 23345567888889999999999977763 23
Q ss_pred hhhHHHHHHHH--HhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHH
Q 043608 467 VVSWSSLILGY--AQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 467 ~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
..+.-.++.+| .-.++.+.|...|....+.-+-| .++.. ..|.-.|..++...+|++
T Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~ 896 (932)
T PRK13184 838 EYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFP--RSLDG--DIFDYLGKISDNLSWWEK 896 (932)
T ss_pred ccchHHHHHHHHHHhcCchhHHHHHHhhccccccCc--chhhc--cccchhccccccccHHHH
Confidence 33333333333 35677778888887776443333 33332 334444555555544443
No 389
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.01 E-value=99 Score=28.31 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh---HHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPNLV---TLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.|.-+-.+.|+..+|.+.++.+.+. .|-.. .-..|+.+|....-+.+...++-+..+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444555789999999999887764 23222 345688888887777777776665543
No 390
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.73 E-value=1.2e+02 Score=26.45 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=16.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCc
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPD 400 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~ 400 (579)
+..+++.+|+.+|++.....+..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 446778888888888776654433
No 391
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.02 E-value=35 Score=28.17 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=13.1
Q ss_pred HHHHHHccCChhhHHHhhcCCC
Q 043608 76 ILNMYGKCGSLEDARMGFDKMP 97 (579)
Q Consensus 76 l~~~~~~~g~~~~A~~~~~~~~ 97 (579)
.+..|.+.|.+++|.+++++..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHh
Confidence 3455566666666666666554
No 392
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.29 E-value=1.4e+02 Score=26.95 Aligned_cols=112 Identities=14% Similarity=0.204 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHHh-CCCCCChHHHHHHHHHhhc-cc-chhhHHHHHHHHHHc-CCCCCchhHHHHHHHHHhcCChHHHH
Q 043608 279 NANEAMSLFSEMRD-RELLPDGLTVHSLLCACIG-RL-TLYQGMQVHSYIIKM-GFDSNVPVCNAILTMYAKCSVLCNAL 354 (579)
Q Consensus 279 ~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (579)
.+.+|+.+|+.... ..+.-|..+...+++.... .+ ....-.++.+.+... +-.++..+...+++.++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45677777764322 2355567777777776654 22 222333444444322 34556666677777777777777777
Q ss_pred HHHHHcC----CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043608 355 LVFKELG----KNADSVSWNSIIAACLQHNQAEELFRLFS 390 (579)
Q Consensus 355 ~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 390 (579)
+++.... ..-|...|..+|......|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 7776541 12355567777777777776655444443
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.62 E-value=23 Score=23.22 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...++.+.++.. +-|-.---.++.++...|++++|.++++++.+.
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444444444332 223334445677777888888888877777653
No 394
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.71 E-value=38 Score=27.95 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCC--CCCh-hhHHHHHHHHHhcC----C-------cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 043608 452 LGSARKLFNFME--NPDV-VSWSSLILGYAQFG----C-------GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGL 517 (579)
Q Consensus 452 ~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~----~-------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 517 (579)
+++|..-|++.. +|+. .++..+..+|...+ + +++|...|++..+ ..|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----
Confidence 344444444443 3653 56677777766433 2 4566666666666 478888888777655
Q ss_pred hHHHHHHHHHHHHh
Q 043608 518 VEEGLHLYRIMENE 531 (579)
Q Consensus 518 ~~~a~~~~~~~~~~ 531 (579)
.+|-++..++.+.
T Consensus 124 -~kap~lh~e~~~~ 136 (186)
T PF06552_consen 124 -AKAPELHMEIHKQ 136 (186)
T ss_dssp -HTHHHHHHHHHHS
T ss_pred -HhhHHHHHHHHHH
Confidence 3466676666654
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.97 E-value=1.4e+02 Score=26.06 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=41.8
Q ss_pred HHhcCCcHHHHHHHHHHHhC-CC-----------CCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 043608 477 YAQFGCGDEALKLFTRMRSL-GV-----------SPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~-~~-----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 537 (579)
+...|+...|+..++.-... |. .|.+.....++..|.+ +++++|.+++.++-+. |+.|.
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~l-gysp~ 272 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKL-GYSPE 272 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHc-CCCHH
Confidence 45678888888887765532 11 4666667777776665 7889999999988876 77764
No 396
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.52 E-value=96 Score=24.03 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHH
Q 043608 485 EALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
.+.++|+.|..+|+-.. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777776554 34666667777777777777777764
No 397
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.35 E-value=18 Score=27.94 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=25.5
Q ss_pred HHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 043608 477 YAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTAC 512 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 512 (579)
..+.|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34567778899999999999988874 55665543
No 398
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.70 E-value=3.1e+02 Score=29.67 Aligned_cols=130 Identities=9% Similarity=0.141 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHH
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 283 (579)
-|..|+..|...|..++|+++|.+..+..- ..|... . ...-. ..++++....++....-...+ ..-..+.+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~-~~d~~~-~---~~~e~-ii~YL~~l~~~~~~Li~~y~~-wvl~~~p~~g 578 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS-DTDSFQ-L---DGLEK-IIEYLKKLGAENLDLILEYAD-WVLNKNPEAG 578 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc-ccccch-h---hhHHH-HHHHHHHhcccchhHHHHHhh-hhhccCchhh
Confidence 478899999999999999999999876420 000000 0 00000 111111111121111000000 1112333444
Q ss_pred HHHHHH---HHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 043608 284 MSLFSE---MRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK 346 (579)
Q Consensus 284 ~~~~~~---m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (579)
.++|.. -....+.++ .+-.+......+.+..+++.+....-.++....+.++..|+.
T Consensus 579 i~Ift~~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 579 IQIFTSEDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred eeeeeccChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 444433 011111211 122345566777788888888877767777788888877765
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.63 E-value=2.6e+02 Score=28.73 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=75.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChH-----
Q 043608 207 SMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNAN----- 281 (579)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----- 281 (579)
+|..+|..+|++..+.++++.+..... .+ +.=...||.-|+.+.+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~--~~-----------------------k~~l~~~nlyi~~~~q~~sf~l~~~~ 87 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNK--GD-----------------------KILLPMINLYIREIIQRGSFELTDVL 87 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCc--CC-----------------------eeehhHHHHHHHHHHhcCCccHHHHH
Confidence 788999999999999999999876541 00 223456788888888888754
Q ss_pred -HHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHH--hcCChHHHHHHHH
Q 043608 282 -EAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYA--KCSVLCNALLVFK 358 (579)
Q Consensus 282 -~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~ 358 (579)
.+.+.+++.. +.-|..||..++.+......-....-++.+++... .|.+++.+. ..=.+++..-+++
T Consensus 88 ~~~~~~lq~a~---ln~d~~t~all~~~sln~t~~~l~~pvl~~~i~~s-------~ngv~di~~~~~v~s~~ev~limd 157 (1117)
T COG5108 88 SNAKELLQQAR---LNGDSLTYALLCQASLNPTQRQLGLPVLHELIHRS-------ANGVIDILMHESVFSPEEVKLIMD 157 (1117)
T ss_pred HHHHHHHHHhh---cCCcchHHHHHHHhhcChHhHHhccHHHHHHHHhh-------hhhHHHHHhhhccCCHHHHHHHHH
Confidence 3444444433 66788899988887766555555555555555431 122333322 2234555666666
Q ss_pred HcCC
Q 043608 359 ELGK 362 (579)
Q Consensus 359 ~~~~ 362 (579)
++..
T Consensus 158 ~l~i 161 (1117)
T COG5108 158 QLNI 161 (1117)
T ss_pred hcCC
Confidence 6633
No 400
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.54 E-value=48 Score=20.29 Aligned_cols=32 Identities=9% Similarity=0.203 Sum_probs=18.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
.+.|-.+++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666655555555444
No 401
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.15 E-value=68 Score=25.07 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=13.1
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHh
Q 043608 473 LILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
|.-++.+.|+++.+.++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 33445556666666666665555
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.59 E-value=55 Score=23.63 Aligned_cols=54 Identities=20% Similarity=0.125 Sum_probs=30.7
Q ss_pred HhcCCcHHHHHHHHHHHh----CCCCCC----hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 478 AQFGCGDEALKLFTRMRS----LGVSPN----LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~----~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.+.|++..|.+-+.+..+ .+..+. ......+...+...|++++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456777777555554433 222221 122334455566778888888888777653
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.31 E-value=28 Score=29.51 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=36.3
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHH-hCCCCChhHHHHHHHHHHccCChhhHHHhhcCCC
Q 043608 40 GLISACSSLRSLQLGRKVHDHILL-SKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMP 97 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 97 (579)
..+......++.+......+...+ ....|++.++..++..+...|+.++|.+..+++.
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333344444444433333332 1236888888888888888999999988887765
No 404
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=53.20 E-value=63 Score=25.78 Aligned_cols=61 Identities=21% Similarity=0.209 Sum_probs=28.2
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC
Q 043608 490 FTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG 552 (579)
Q Consensus 490 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (579)
.+.+.+.|+++++.=. .++..+...++.-.|.++++++.+. +...+..|...-++.+...|
T Consensus 9 ~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 3444455555443211 3344444445555666666666654 33333444333344444444
No 405
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.14 E-value=1.2e+02 Score=27.97 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=21.4
Q ss_pred HhcCChhHHHHHHHhhcCCCChhHhhhhh
Q 043608 549 ARAGCVHEAEDFINQMACDADIVVWKSLL 577 (579)
Q Consensus 549 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 577 (579)
.+.||++.=.++.......|+...+...+
T Consensus 244 fn~Gdl~~f~~l~~~~~~~p~L~~~e~~L 272 (380)
T KOG2908|consen 244 FNSGDLKRFESLKGVWGKQPDLASNEDFL 272 (380)
T ss_pred hccCCHHHHHHHHHHhccCchHHHHHHHH
Confidence 37788888877777776678877776654
No 406
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=52.59 E-value=1.2e+02 Score=26.32 Aligned_cols=97 Identities=16% Similarity=0.046 Sum_probs=48.9
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhCC---C--CChhhHH--HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHH
Q 043608 433 AFDVFVMNGLMDIYIKCGSLGSARKLFNFME---N--PDVVSWS--SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTL 505 (579)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~--~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 505 (579)
.+...-+|.|+--|.-...+.+|-..|..-. . .|..+++ .-|......|+.++|++...+....=+..|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 4444555555555554444555555554332 1 2333332 3456667778888887777765433233343333
Q ss_pred HHHHHH----hhccCchHHHHHHHHHHH
Q 043608 506 VGVLTA----CSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 506 ~~l~~~----~~~~g~~~~a~~~~~~~~ 529 (579)
-.|..- ..+.|..++|+++.+.=.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 332221 345666666666655433
No 407
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.26 E-value=1.8e+02 Score=26.33 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHH
Q 043608 118 NDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLH 159 (579)
Q Consensus 118 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 159 (579)
.+|.++|.-+.+.. -...+-..++..+....+..+|...+
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHH
Confidence 57888888887752 23344555666666666665555444
No 408
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=52.19 E-value=1.8e+02 Score=26.12 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=19.0
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhh
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQN 27 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~ 27 (579)
+.+++.+.+.+....|+.+.+....
T Consensus 86 ~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 86 HHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 5677788888888888888777654
No 409
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.13 E-value=33 Score=30.95 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=33.2
Q ss_pred CChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHH
Q 043608 364 ADSV-SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDV 407 (579)
Q Consensus 364 ~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 407 (579)
|+.. -|+..|....+.||+++|++++++..+.|+.--..+|-.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3444 3678888999999999999999999998877555555433
No 410
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.95 E-value=85 Score=25.08 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=15.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcC
Q 043608 414 MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCG 450 (579)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 450 (579)
.++.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 ~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 33 ADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3333444444444444444444433333344444444
No 411
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.66 E-value=1.2e+02 Score=29.22 Aligned_cols=68 Identities=13% Similarity=0.148 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHH
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 283 (579)
+...|++.++-.|++..|++.++.+.-.. ..++.+.+.-.+.+|-.+.-+|...+++.+|
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~--------------------~~l~~~V~~~~is~~YyvGFaylMlrRY~DA 183 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNK--------------------KGLYTKVPACHISTYYYVGFAYLMLRRYADA 183 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCccc--------------------chhhccCcchheehHHHHHHHHHHHHHHHHH
Confidence 45567888899999999999988764321 1234444456677788888899999999999
Q ss_pred HHHHHHHH
Q 043608 284 MSLFSEMR 291 (579)
Q Consensus 284 ~~~~~~m~ 291 (579)
.+.|....
T Consensus 184 ir~f~~iL 191 (404)
T PF10255_consen 184 IRTFSQIL 191 (404)
T ss_pred HHHHHHHH
Confidence 99998764
No 412
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=50.71 E-value=16 Score=20.05 Aligned_cols=20 Identities=10% Similarity=0.403 Sum_probs=11.8
Q ss_pred hhHHHHHHHhh-cCCCChhHh
Q 043608 554 VHEAEDFINQM-ACDADIVVW 573 (579)
Q Consensus 554 ~~~A~~~~~~~-~~~~~~~~~ 573 (579)
++.|..++++. ..+|++.+|
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHH
Confidence 45666666666 445665555
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.70 E-value=1.2e+02 Score=23.57 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 043608 219 LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSE 289 (579)
Q Consensus 219 ~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 289 (579)
+.+.++|..|..+|+. ..-+..|......+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG--------------------------~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIG--------------------------TKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTS--------------------------TTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCcc--------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3899999999998872 45667788888889999999999999875
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.63 E-value=93 Score=28.69 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHHHHcCCHHHHHHHHhhCC-------CCChhhHH--HHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 443 MDIYIKCGSLGSARKLFNFME-------NPDVVSWS--SLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
+....+.++.++|.++++++. +|+.+.|. ...+.+...|+..++.+++++..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333444455666666655554 24444432 233444455555666555555554
No 415
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.39 E-value=2e+02 Score=26.27 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=37.7
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 043608 386 FRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI 447 (579)
Q Consensus 386 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (579)
.++|+.|.+.++.|.-..|.-+.-.+.+.=.+..+..+|+.+... +.-+..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 356777777777887777777776777777777777777776642 222555555554
No 416
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=50.33 E-value=3.1e+02 Score=28.31 Aligned_cols=60 Identities=5% Similarity=-0.046 Sum_probs=36.2
Q ss_pred ChhHHHHHHHHHHccCChhhHHHhhcCCCCCC-eeehhHHhhhhhcCCChhhHHHHHHHHHHC
Q 043608 69 DVVLQNHILNMYGKCGSLEDARMGFDKMPQRN-VVSWTAMIAGCSQNYQENDAIKLYIQMLQS 130 (579)
Q Consensus 69 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (579)
....+..++..+ |.=+.+.-.++++++.. . ...+..+++++...|-.+...-+.+.+...
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 445666666655 34466666666666554 3 456777777777777666555555555443
No 417
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.82 E-value=1.8e+02 Score=25.47 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=49.5
Q ss_pred HHHHHHHc-CCHHHHHHHHhhCCC------CChhhHHHHHHH---HHhcCCcHHHHHHHHHHHhCCCCCChhHHH---HH
Q 043608 442 LMDIYIKC-GSLGSARKLFNFMEN------PDVVSWSSLILG---YAQFGCGDEALKLFTRMRSLGVSPNLVTLV---GV 508 (579)
Q Consensus 442 l~~~~~~~-~~~~~A~~~~~~~~~------~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l 508 (579)
+...|... .+++.|...|+..-+ .+...--.++.+ -...+++.+|+.+|++.....+.-+..-|. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 455666666655431 222222233322 245678999999999987765443322222 11
Q ss_pred HH---HhhccCchHHHHHHHHHHHHhhCCCCCcc
Q 043608 509 LT---ACSHVGLVEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 509 ~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
+. ++.-..|.-.+...+++.. ...|+..
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~---~~dP~F~ 229 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQ---ELDPAFT 229 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHH---hcCCccc
Confidence 11 1223356666777777776 3467644
No 418
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=49.71 E-value=52 Score=32.69 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=62.1
Q ss_pred hhHHHhhcCCCCCCeeehhHHhh--h-hhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHH
Q 043608 87 EDARMGFDKMPQRNVVSWTAMIA--G-CSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVI 163 (579)
Q Consensus 87 ~~A~~~~~~~~~~~~~~~~~l~~--~-~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 163 (579)
+-+-.++..|..|+...|-.|=. . +...|+...|.+++.........-.......|.+.+.+.|-.-.|-.++.+.+
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 33555666666666655544422 2 33467888888877776543222233445555555666666666666666655
Q ss_pred HhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC
Q 043608 164 KSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR 199 (579)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 199 (579)
... ...+.++-.+.+++....+++.|++.|+...+
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 544 23344444555555556666666666655443
No 419
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=49.57 E-value=77 Score=26.13 Aligned_cols=36 Identities=8% Similarity=-0.009 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 416 SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
+.-.|.++++.+.+.+..++..|...-+..+...|-
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 344455555555544444444444444444444444
No 420
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.68 E-value=1e+02 Score=30.73 Aligned_cols=118 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHhhhhcCCCCCcc----------------cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHH
Q 043608 12 QNLYNEALVAYDFSQNNTNIRIRPS----------------TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNH 75 (579)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 75 (579)
++-.++++-.|+++... .+.|... +...-+..+.++|.+..|.++...+.+.....|+.....
T Consensus 304 adLieR~Ly~~d~a~hp-~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~ 382 (665)
T KOG2422|consen 304 ADLIERGLYVFDRALHP-NFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILY 382 (665)
T ss_pred HHHHHHHHHHHHHHhcc-ccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHH
Q ss_pred HHHHHH-ccCChhhHHHhhcCCCC-------CCeeehhHHhhhhhcCCC---hhhHHHHHHHHHHC
Q 043608 76 ILNMYG-KCGSLEDARMGFDKMPQ-------RNVVSWTAMIAGCSQNYQ---ENDAIKLYIQMLQS 130 (579)
Q Consensus 76 l~~~~~-~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 130 (579)
+|..|+ +..+++..+++++.... ||-.---+|...|.+... -..|...+.+....
T Consensus 383 ~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 383 LIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
No 421
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.43 E-value=86 Score=27.37 Aligned_cols=118 Identities=13% Similarity=0.028 Sum_probs=80.9
Q ss_pred HHHcCCHHHHHHHHhhCC--CCChhh-HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccCchHHH
Q 043608 446 YIKCGSLGSARKLFNFME--NPDVVS-WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV-TLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~--~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 521 (579)
|.....++.|...+.+.. .|...+ |..-+.++.+.++++.+..=-++.++ +.||.. ..-.+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 555567888888777665 477644 45667778888899888887777766 567765 344555666777889999
Q ss_pred HHHHHHHHHhh---CCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 522 LHLYRIMENEY---GIIPTREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 522 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
+..+.+..+.. .++|...+...|.++-.+.=...++.++.++..
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 99888874321 445555666777666555556667777777764
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.20 E-value=1.2e+02 Score=25.19 Aligned_cols=44 Identities=18% Similarity=0.055 Sum_probs=23.4
Q ss_pred HHHHHHHHhhCCC--CCh----h-----hHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 452 LGSARKLFNFMEN--PDV----V-----SWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 452 ~~~A~~~~~~~~~--~~~----~-----~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
++.|+.+++.+.+ +.. . .--..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5667777666653 111 0 111223446666666666666666655
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.04 E-value=2.7e+02 Score=26.77 Aligned_cols=54 Identities=7% Similarity=0.067 Sum_probs=33.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHh--HHHHHHHHHhc--cCChHHHHHHHHHHHHc
Q 043608 376 CLQHNQAEELFRLFSRMLASQIKPDHI--TFNDVMGACAK--MASLEMVTQLHCYITKT 430 (579)
Q Consensus 376 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 430 (579)
+...+++..|.++++++... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44677788888888887776 555444 33344444432 34667777777766543
No 424
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=46.03 E-value=2e+02 Score=24.87 Aligned_cols=62 Identities=13% Similarity=-0.020 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHH--HhhcccchhhHHHHHHHHHHc
Q 043608 264 LASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLC--ACIGRLTLYQGMQVHSYIIKM 328 (579)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~ 328 (579)
+..||-+.-.+...|+++.|.+.|+...+.. |. .-|..+=+ ++.-.|++..|.+=+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 4567777777788888888888888877653 21 11222222 233456666666544444433
No 425
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.22 E-value=34 Score=26.54 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=25.1
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHh
Q 043608 112 SQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKAC 146 (579)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 146 (579)
-..|.-..|-.+|+.|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456777899999999999988874 66666543
No 426
>PRK10941 hypothetical protein; Provisional
Probab=45.18 E-value=2.3e+02 Score=25.66 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+.+-.+|.+.++++.|+++.+.+... .|+ +.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34445556666666666666666653 333 333333333456666666666666666543
No 427
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.01 E-value=1.9e+02 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=18.3
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 304 SLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 304 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
+++..|.+..++.++..+++.+.+..
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~ 162 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQ 162 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777788888877776654
No 428
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.20 E-value=81 Score=19.88 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=17.1
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCChh
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPNLV 503 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 503 (579)
+.-++.+.|++++|.+..+.+.+. .|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 344566777777777777777663 56543
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.53 E-value=2.8e+02 Score=25.91 Aligned_cols=154 Identities=9% Similarity=0.124 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc---CCCHHHHHHH
Q 043608 117 ENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK---FDRILDARNV 193 (579)
Q Consensus 117 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~ 193 (579)
.+.-+.+|++..+. .+-+.......|+.+.+..+.+...+-++.+.... +.+...|...++.... .-.++....+
T Consensus 47 ~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Q ss_pred hcccCCC---------------------cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHH---HHHHHHH
Q 043608 194 FSGIARK---------------------DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFG---SVFSACS 249 (579)
Q Consensus 194 ~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~---~~l~~~~ 249 (579)
|.+..+. -...+..+...+.+.|..+.|..+++.+.+-+++.|....-. ..+....
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe 204 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFE 204 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHH
Q ss_pred HHHHHHhhcCCCCChhhHHHHHH
Q 043608 250 NFARILFNEIDSPDLASWNALIA 272 (579)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~li~ 272 (579)
..-..-..++..|+..-|...+.
T Consensus 205 ~FWeS~vpRiGE~gA~GW~~~~~ 227 (321)
T PF08424_consen 205 EFWESEVPRIGEPGAKGWRKWME 227 (321)
T ss_pred HHhCcCCCCCCCCCcchhhhhhc
No 430
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.47 E-value=2.6e+02 Score=25.60 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 043608 285 SLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIK 327 (579)
Q Consensus 285 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 327 (579)
++++.|...++.|.-..|..+.-.+.+.=.+..++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4566666666677666666666666666666666666666654
No 431
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.24 E-value=3.4e+02 Score=26.80 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=23.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccch
Q 043608 277 HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL 315 (579)
Q Consensus 277 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 315 (579)
.+.++..+++++.+...|.......++.....+.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 456666777777766666555555555555555555443
No 432
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=42.72 E-value=86 Score=20.82 Aligned_cols=51 Identities=8% Similarity=-0.092 Sum_probs=40.0
Q ss_pred CCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHcc
Q 043608 32 RIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKC 83 (579)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (579)
.|....++.++...++..-.+.++..+.+....| ..+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3556677889999999999999999999999888 57777887777777664
No 433
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.03 E-value=2.6e+02 Score=25.13 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (579)
++.....+...|.+.|++.+|...|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 556667777777777777777766543
No 434
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.34 E-value=1.7e+02 Score=24.10 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCch
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLV 518 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 518 (579)
-..++..+...++.-.|.++++++.+.+..++..|.--.+..+.+.|-+
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3344455555555666777777777666555655554555556665544
No 435
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.75 E-value=1.9e+02 Score=23.10 Aligned_cols=60 Identities=7% Similarity=0.080 Sum_probs=33.2
Q ss_pred HHHHCCCCCcHhHHHHHHHHHhc-cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 391 RMLASQIKPDHITFNDVMGACAK-MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 391 ~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
.+.+.|++++..-.. ++..+.. .+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 345556655544332 2333333 23566777777777777666666655555555655554
No 436
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.48 E-value=3.7e+02 Score=25.85 Aligned_cols=63 Identities=13% Similarity=-0.070 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCChHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDREL--LPDGLTVHSLLCACIGRLTLYQGMQVHSYIIK 327 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 327 (579)
..+.-+.+.|...|+.+.|++.|...++-.. +-....+..+|..-.-.|+|..+..+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4567788899999999999999988654321 11223344444555556777666666555543
No 437
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=38.28 E-value=49 Score=21.71 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=23.7
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHh-----hcchhhhhhhhH
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISAC-----SSLRSLQLGRKV 57 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 57 (579)
+...|++=+|-++++.+... ...+....+..+|... .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~-~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKA-APGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCC-T-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHH-CCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 44566677777777766653 2222344555555443 234555544443
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.20 E-value=3.7e+02 Score=25.85 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=39.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChH--HHHHHHHHhh--cccchhhHHHHHHHHHHc
Q 043608 271 IAGVASHSNANEAMSLFSEMRDRELLPDGL--TVHSLLCACI--GRLTLYQGMQVHSYIIKM 328 (579)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 328 (579)
+..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556789999999999999987 555554 3444444443 456677888888876654
No 439
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.01 E-value=1.5e+02 Score=21.08 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 320 QVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
++|+.....|+..|+.+|..+++...-.-.++...++++.+
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444445555544444443333333334444433
No 440
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.09 E-value=1.6e+02 Score=23.56 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=24.2
Q ss_pred HHHHHHHhc-CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCch
Q 043608 472 SLILGYAQF-GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLV 518 (579)
Q Consensus 472 ~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 518 (579)
.++..+... +..-.|.++++++.+.+...+..|.--.+..+...|-+
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 334444433 34556666666666665555555444444555555543
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.88 E-value=1.7e+02 Score=25.96 Aligned_cols=57 Identities=28% Similarity=0.233 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHh----CCC-CCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRS----LGV-SPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~----~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
.+...|.+.|++++|.++|+.+.. .|. .+...+...+..++...|+.+..+.+-=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456678888888888888888742 232 233456677777888888888877765444
No 442
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=36.87 E-value=1.9e+02 Score=22.01 Aligned_cols=74 Identities=15% Similarity=-0.015 Sum_probs=45.1
Q ss_pred HHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCC---C---------------CChhHHHHHHHHH
Q 043608 19 LVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKC---Q---------------PDVVLQNHILNMY 80 (579)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~---------------~~~~~~~~l~~~~ 80 (579)
++.|..+....+-.+...+...+...+.=. ...|..++..|.+.|+ . +....+...+..+
T Consensus 3 ~~~y~~L~~~~~~~~~~vtl~elA~~l~cS--~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~ 80 (115)
T PF12793_consen 3 LEQYQRLWQHYGGQPVEVTLDELAELLFCS--RRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEEL 80 (115)
T ss_pred HHHHHHHHHHcCCCCcceeHHHHHHHhCCC--HHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHH
Confidence 345666666545556666777777765432 3346778888887762 1 1124445555666
Q ss_pred HccCChhhHHHhhc
Q 043608 81 GKCGSLEDARMGFD 94 (579)
Q Consensus 81 ~~~g~~~~A~~~~~ 94 (579)
...|+++.|.++++
T Consensus 81 l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 81 LEQGKYEQALQLLD 94 (115)
T ss_pred HHcCCHHHHHHHHH
Confidence 66777777777665
No 443
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.69 E-value=87 Score=23.40 Aligned_cols=42 Identities=7% Similarity=-0.049 Sum_probs=30.7
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK 82 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (579)
+++..+.++...++|+++.+.|.++| ..+...-+.|-..+.+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVK 107 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 56777777888889999999999888 6666665555444443
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.43 E-value=1.3e+02 Score=28.99 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=26.2
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHh----h-CCCC-CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 506 VGVLTACSHVGLVEEGLHLYRIMENE----Y-GIIP-TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 506 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..|++.++-.||+..|++.++.+.-. + .+++ ...++..++-+|.-.+++.+|.+.|...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554443210 0 0000 1224444555555555555555555444
No 445
>PRK10941 hypothetical protein; Provisional
Probab=36.34 E-value=1.8e+02 Score=26.21 Aligned_cols=69 Identities=14% Similarity=0.020 Sum_probs=50.9
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhh----cCCCChhHhhh
Q 043608 504 TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQM----ACDADIVVWKS 575 (579)
Q Consensus 504 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~ 575 (579)
..+.+-.+|.+.++++.|++..+.+.. +.|+ +.-+.--.-.|.+.|.+..|..=++.. +..|+......
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~---l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ---FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 455677789999999999999999985 3554 445666677789999999998866555 55555554433
No 446
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.00 E-value=3.8e+02 Score=27.62 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=49.6
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHcC--CCCCchhHHHHHHHHHhcCChH------HHHHHHHHcCCCCChhhHHHHHHH
Q 043608 304 SLLCACIGRLTLYQGMQVHSYIIKMG--FDSNVPVCNAILTMYAKCSVLC------NALLVFKELGKNADSVSWNSIIAA 375 (579)
Q Consensus 304 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~l~~~ 375 (579)
+++.+|...|++-.+.++++.....+ -+.-...+|..++...+.|.++ .|.+.++.....-|..+|..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 77888888888888888888877653 2334456777777777777643 345555555555566677666655
Q ss_pred HHh
Q 043608 376 CLQ 378 (579)
Q Consensus 376 ~~~ 378 (579)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 444
No 447
>PRK12356 glutaminase; Reviewed
Probab=35.84 E-value=3.4e+02 Score=25.19 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=14.6
Q ss_pred HHHHHHcCCCCChhhHHHHHH
Q 043608 354 LLVFKELGKNADSVSWNSIIA 374 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~ 374 (579)
..+|+.++..|+-..||.++.
T Consensus 86 ~~V~~~VG~EPSG~~FNsi~~ 106 (319)
T PRK12356 86 QAVREKIGADPTGLPFNSVIA 106 (319)
T ss_pred HHHHHHhCCCCCCCCcchHHH
Confidence 456777777777777776654
No 448
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=35.63 E-value=6.2e+02 Score=27.62 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 486 ALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
-.+.|.++.+-=-..|..++..-...+...|++..|.+++.++.+..+-.++...+..+...+...|.- --..+++.+
T Consensus 1215 ~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~~ 1292 (1304)
T KOG1114|consen 1215 YNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKNW 1292 (1304)
T ss_pred HHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhhh
Confidence 344444444321122444555555566778999999999999988768888888888888888888854 334445554
No 449
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.30 E-value=4.4e+02 Score=25.77 Aligned_cols=113 Identities=13% Similarity=0.064 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHh---CCC-CCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHH
Q 043608 281 NEAMSLFSEMRD---REL-LPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLV 356 (579)
Q Consensus 281 ~~a~~~~~~m~~---~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (579)
++...+++.... .|+ ..+......++..+ .|+...+..+++.+...+...+. +...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHH
Confidence 444444444332 233 44555555554443 67888887777776544211121 112222
Q ss_pred HHHcC--CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 357 FKELG--KNADSVSWNSIIAACLQ---HNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 357 ~~~~~--~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
+.... ...+......+++++.+ .++.+.|+.++.+|.+.|..|....-..++.++
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22210 01122234444555544 578999999999999998887755544444443
No 450
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=35.04 E-value=1.6e+02 Score=29.67 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=62.2
Q ss_pred cCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHH
Q 043608 147 SGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALC 223 (579)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 223 (579)
-..|+...|...+.......+.........|.....+.|...+|..++.+... ..+.++-.+.+++....++++|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 45688888888887776554433444455677777777877777777665432 345577778888899999999999
Q ss_pred HHHHHHhcC
Q 043608 224 HFNEMLHHG 232 (579)
Q Consensus 224 ~~~~m~~~~ 232 (579)
.|++..+..
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 999988774
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.74 E-value=85 Score=20.84 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=24.4
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
|....++.++..++...-.++++..+.++...|. .+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3444555555555555556666666666666553 34444444444333
No 452
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.51 E-value=94 Score=23.45 Aligned_cols=41 Identities=7% Similarity=0.026 Sum_probs=21.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC
Q 043608 375 ACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA 415 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 415 (579)
.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33333444455566666655555555555555555544444
No 453
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=34.49 E-value=3.6e+02 Score=24.57 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=33.0
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHhcCCcHHHH
Q 043608 432 LAFDVFVMNGLMDIYIKCGSLGSARKLFNFME-----NPDVVSWSSLILGYAQFGCGDEAL 487 (579)
Q Consensus 432 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~ 487 (579)
-.++..+...+++.+++.+++..-.++++... ..|...|..+++.....|+..-..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 34555566666666666666666666665544 245566666666666666654333
No 454
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.22 E-value=1.3e+02 Score=21.67 Aligned_cols=53 Identities=15% Similarity=0.026 Sum_probs=34.0
Q ss_pred hhccCchHHHHHHHHHHHHhhC--CCCC-----cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 512 CSHVGLVEEGLHLYRIMENEYG--IIPT-----REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~~--~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+.|++.+|.+.+.+..+... ..+. ......+.......|+.++|.+.+++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3567899999776666543211 1111 112233556677889999999999887
No 455
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.17 E-value=2e+02 Score=21.54 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=22.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 043608 266 SWNALIAGVASHSNANEAMSLFSEMRD 292 (579)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 292 (579)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888889999999999988876
No 456
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.87 E-value=75 Score=16.53 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=11.4
Q ss_pred hhhhhhhHHHHHHHhCCCCChhHHHHH
Q 043608 50 SLQLGRKVHDHILLSKCQPDVVLQNHI 76 (579)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~~~l 76 (579)
+.+.|..+|+.+++.. +.+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHH
Confidence 3444555555555433 2334444433
No 457
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=33.74 E-value=4.3e+02 Score=25.25 Aligned_cols=88 Identities=13% Similarity=0.017 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHH------------HHHHHhcCCcHHHHHHHHHHHhCCC-CCCh---
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSL------------ILGYAQFGCGDEALKLFTRMRSLGV-SPNL--- 502 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--- 502 (579)
-..|...+-..|+.++|..++.+.. +.||.++ ++.|.-.+++-.|--+-++...+-+ .|+.
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~---VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQ---VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 3456677778888888888877754 2333322 3445555666666555554443222 1221
Q ss_pred --hHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 503 --VTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 503 --~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
.-|..+++.....+.+=.+.+.++...
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy 239 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIY 239 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 134444444444444444444444443
No 458
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.73 E-value=4.5e+02 Score=25.51 Aligned_cols=20 Identities=15% Similarity=0.001 Sum_probs=10.4
Q ss_pred HHHHHccCChhhHHHhhcCC
Q 043608 77 LNMYGKCGSLEDARMGFDKM 96 (579)
Q Consensus 77 ~~~~~~~g~~~~A~~~~~~~ 96 (579)
+...+..|+.+.+..+++.-
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcC
Confidence 33344556666665555443
No 459
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.41 E-value=4.1e+02 Score=24.61 Aligned_cols=145 Identities=12% Similarity=0.034 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-CChhhHHHHHHHHHhcCCcHHHHHHHH
Q 043608 417 LEMVTQLHCYITKTGL----AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-PDVVSWSSLILGYAQFGCGDEALKLFT 491 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 491 (579)
.+.|.+.++.....+. ..++.....++....+.|..+.-..+++.... ++..-...++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 5567777777775322 44666667777777788887776666666664 566677888888888888888888999
Q ss_pred HHHhCC-CCCChhHHHHHHHHhhccCc--hHHHHHHHH----HHHHhhCCCCCcchhHHHHHHHHh----cCChhHHHHH
Q 043608 492 RMRSLG-VSPNLVTLVGVLTACSHVGL--VEEGLHLYR----IMENEYGIIPTREHCSCVVDLLAR----AGCVHEAEDF 560 (579)
Q Consensus 492 ~m~~~~-~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 560 (579)
.....+ +++.. . ..++.++...+. .+.+.+++. .+.+. +..+......++..+.. ..+.++..++
T Consensus 226 ~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~--~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 226 LLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK--FGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH--C-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 888854 44433 3 333444442333 355555544 44433 22222245556665433 3455566666
Q ss_pred HHhhc
Q 043608 561 INQMA 565 (579)
Q Consensus 561 ~~~~~ 565 (579)
++.-+
T Consensus 302 ~~~~~ 306 (324)
T PF11838_consen 302 FEDKP 306 (324)
T ss_dssp HHHHC
T ss_pred HhhCc
Confidence 65543
No 460
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.24 E-value=2.4e+02 Score=28.20 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCC-C-CC---hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 441 GLMDIYIKCGSLGSARKLFNFME-N-PD---VVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~-~-~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
.++.-|.+.+++++|..++..|. . -. ....+.+++.+.+..--++.+..++.+.-
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45556667777777777766665 1 11 12233334444444434444444454443
No 461
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.71 E-value=76 Score=24.21 Aligned_cols=43 Identities=5% Similarity=0.027 Sum_probs=19.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc
Q 043608 372 IIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414 (579)
Q Consensus 372 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 414 (579)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 3333444444445555555555555555555544444444433
No 462
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.36 E-value=1.3e+02 Score=22.62 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 519 (579)
++..+...+..-.|.++++++.+.+..++..|.-..++.+.+.|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555556666778888888888776677776666667777766543
No 463
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=30.96 E-value=1.1e+02 Score=25.00 Aligned_cols=16 Identities=6% Similarity=-0.089 Sum_probs=7.4
Q ss_pred HhcCChHHHHHHHHHc
Q 043608 345 AKCSVLCNALLVFKEL 360 (579)
Q Consensus 345 ~~~~~~~~a~~~~~~~ 360 (579)
+..|+.+++..+.+..
T Consensus 129 ~~~~~~~~v~~~vr~y 144 (164)
T PF07840_consen 129 CEKGDYDQVPDVVRQY 144 (164)
T ss_dssp HHCT-CCGHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3445555555555444
No 464
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.73 E-value=7.7e+02 Score=27.28 Aligned_cols=250 Identities=15% Similarity=0.079 Sum_probs=129.0
Q ss_pred CCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChH-HHHHHHHHcCCCCChhhHHHHHH
Q 043608 296 LPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLC-NALLVFKELGKNADSVSWNSIIA 374 (579)
Q Consensus 296 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~l~~ 374 (579)
.+|..+-...+..+.+.+..+ +...+..+.+ .++..+-...+.++.+.+... ....+...+.. +|...-...+.
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-~d~~VR~~A~~ 706 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-PDPVVRAAALD 706 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC-CCHHHHHHHHH
Confidence 456666666666666655433 3333333332 334444445555554443211 11112222222 35554445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHH
Q 043608 375 ACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGS 454 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 454 (579)
++...+..+ ...+.. +.. .+|...-...+.++...+..+.. ...--.++..+-.....++...+..+.
T Consensus 707 aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~l-------~~~l~D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 707 VLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVESV-------AGAATDENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHHH-------HHHhcCCCHHHHHHHHHHHHHhccccc
Confidence 554433211 112222 222 34444444555555555443221 111224566666777777777665443
Q ss_pred -HHHHH-hhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhh
Q 043608 455 -ARKLF-NFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEY 532 (579)
Q Consensus 455 -A~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 532 (579)
+...+ .-+.++|...-...+.++.+.|..+.+...+..+.+ .++...-...+.++...+. +++...+..+.+
T Consensus 775 ~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-- 848 (897)
T PRK13800 775 PAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT-- 848 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc--
Confidence 23333 334467777777888888888876655555555554 2455555556677777665 445555555554
Q ss_pred CCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCCCh
Q 043608 533 GIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDADI 570 (579)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 570 (579)
.|+..+-...+.++.+.+.-..+...+.+....+|.
T Consensus 849 --D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~ 884 (897)
T PRK13800 849 --DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDA 884 (897)
T ss_pred --CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCH
Confidence 356666666777777654345677777666444454
No 465
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.56 E-value=1.3e+02 Score=21.32 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc
Q 043608 278 SNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT 314 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 314 (579)
.+.+++.++++.+..+| ...|..+..++...|.
T Consensus 44 tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 44556666666665543 3345555555544443
No 466
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.17 E-value=3.9e+02 Score=23.63 Aligned_cols=118 Identities=15% Similarity=-0.034 Sum_probs=72.5
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCch-hHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHH-HHHHHHHhcCCcHH
Q 043608 410 ACAKMASLEMVTQLHCYITKTGLAFDV-FVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWS-SLILGYAQFGCGDE 485 (579)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~~~~~~~~~~ 485 (579)
.|.....++.|...+.+.+. +.|++ .-|..-+.++.+..+++.+..--.+..+ ||.+.-. .+..++.....+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 35666778888886666554 45665 3445566677788888887766665554 5554433 34456678889999
Q ss_pred HHHHHHHHHhC----CCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 486 ALKLFTRMRSL----GVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 486 a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
|+..+.+..+. .+.|-......|..+=-+.=...+..++.++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 99999988432 233334455555554333333444555555443
No 467
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.81 E-value=2e+02 Score=20.09 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=4.5
Q ss_pred cCChhhHHHhhc
Q 043608 83 CGSLEDARMGFD 94 (579)
Q Consensus 83 ~g~~~~A~~~~~ 94 (579)
.|+++-...+++
T Consensus 7 ~~~~~~~~~ll~ 18 (89)
T PF12796_consen 7 NGNLEILKFLLE 18 (89)
T ss_dssp TTTHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 333333333333
No 468
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.43 E-value=3.9e+02 Score=23.40 Aligned_cols=122 Identities=14% Similarity=0.078 Sum_probs=58.0
Q ss_pred HHHHHHHH--HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCc
Q 043608 440 NGLMDIYI--KCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGL 517 (579)
Q Consensus 440 ~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 517 (579)
..+++++. ..+++++|.+.+-.-.-+ ..--.-++.++...|+.+.|..+++...-.. .+......++.. ...|.
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGL 155 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCC
Confidence 33444433 445666666666433211 0111235666666777777777776643211 112222333333 44467
Q ss_pred hHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhcCCCC
Q 043608 518 VEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMACDAD 569 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 569 (579)
+.+|..+-+...+. -....+..++..+..........+.+-.+++.++
T Consensus 156 v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 156 VTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEE 203 (226)
T ss_pred HHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChH
Confidence 77777666655432 1133555666666544322333333334444444
No 469
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.38 E-value=1.2e+02 Score=22.60 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcc--cchhhHHHHHHHHHHcCCC
Q 043608 268 NALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGR--LTLYQGMQVHSYIIKMGFD 331 (579)
Q Consensus 268 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~ 331 (579)
..++..|...|+.++|..-++++... .--......++..+... ..-+....++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 45666777889999999999886432 11122333344443333 2233444556666655543
No 470
>PRK12357 glutaminase; Reviewed
Probab=29.31 E-value=4.7e+02 Score=24.35 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=14.7
Q ss_pred HHHHHHcCCCCChhhHHHHHH
Q 043608 354 LLVFKELGKNADSVSWNSIIA 374 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~ 374 (579)
..+|+.++..|+-..||.++.
T Consensus 90 ~~V~~~VG~EPSG~~FNSi~~ 110 (326)
T PRK12357 90 SYVLERVDVEPTGDAFNSIIR 110 (326)
T ss_pred HHHHHHhCCCCCCCCcchhhh
Confidence 456777777777777777653
No 471
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.02 E-value=4.2e+02 Score=24.33 Aligned_cols=26 Identities=12% Similarity=0.072 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 369 WNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 369 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
-...+..+...|++..|++++.+..+
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566677777777777766554
No 472
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=28.89 E-value=2.8e+02 Score=23.81 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHcCCC----------CChhhHHHHHHHHHhcC---------CHHHHHHHHHHHHHCCCCC-cHhHHHHHH
Q 043608 349 VLCNALLVFKELGKN----------ADSVSWNSIIAACLQHN---------QAEELFRLFSRMLASQIKP-DHITFNDVM 408 (579)
Q Consensus 349 ~~~~a~~~~~~~~~~----------~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 408 (579)
..+.|..++++|+.. ....-|..+..+|++.| +.+.-..+++...+.|++- =++.|.++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 356777777777433 13344666666776665 2333444444444444321 123444444
Q ss_pred HHHhccCChHHHHHHHHH
Q 043608 409 GACAKMASLEMVTQLHCY 426 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~ 426 (579)
+.-.-.-+.++..+++..
T Consensus 216 Dk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAI 233 (236)
T ss_pred ccccCCCCHHHHHHHHHH
Confidence 443333344444444443
No 473
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.76 E-value=1e+02 Score=20.84 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=22.4
Q ss_pred hhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHcc
Q 043608 49 RSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKC 83 (579)
Q Consensus 49 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (579)
=+.+.|..++..+.... ..++..||++...+.|.
T Consensus 11 lDtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 35666777777766544 56777888877766553
No 474
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.41 E-value=3.7e+02 Score=22.78 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCC--------------CChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVS--------------PNLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~--------------p~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
+++..|-+..++.+..++++.|.+..+. +.-...+..+..+.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4556666777777777777777654332 222344555555666666666666655
No 475
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=27.74 E-value=5.8e+02 Score=24.90 Aligned_cols=238 Identities=9% Similarity=-0.118 Sum_probs=0.0
Q ss_pred HHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCCh
Q 043608 38 YAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQE 117 (579)
Q Consensus 38 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (579)
+..-+.++...| ..+...+-..+.. .++...+.....++....+......+.+.+..++...-.....++...+..
T Consensus 41 L~AhLdgL~~~G--~~a~~~L~~aL~~--d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 41 LLAHVDGLVLAG--KAATELLVSALAE--ADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHHHHHhh--HhHHHHHHHHHhh--CCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCch
Q ss_pred hhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhccc
Q 043608 118 NDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGI 197 (579)
Q Consensus 118 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (579)
.....+..-+... +...-...+.++...+ ..+...+....+ .++..+...-+.++...+..+..-.+..-.
T Consensus 117 ~a~~~L~~~L~~~----~p~vR~aal~al~~r~--~~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al 187 (410)
T TIGR02270 117 QAEPWLEPLLAAS----EPPGRAIGLAALGAHR--HDPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYL 187 (410)
T ss_pred HHHHHHHHHhcCC----ChHHHHHHHHHHHhhc--cChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHH
Q ss_pred CCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcC
Q 043608 198 ARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASH 277 (579)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (579)
...|...-..-+.+....|. ..|...+..... .++....-.+...+...
T Consensus 188 ~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~------------------------------~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 188 RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV------------------------------LEGGPHRQRLLVLLAVA 236 (410)
T ss_pred cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh------------------------------ccCccHHHHHHHHHHhC
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHH
Q 043608 278 SNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYI 325 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 325 (579)
|.. ++.+.+..+.+... +-...+.++...|+...+..+.+.+
T Consensus 237 ~~~-~a~~~L~~ll~d~~-----vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 237 GGP-DAQAWLRELLQAAA-----TRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred Cch-hHHHHHHHHhcChh-----hHHHHHHHHHHcCCcchHHHHHHHh
No 476
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=27.60 E-value=1.3e+02 Score=22.90 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVG 516 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 516 (579)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 445555566666777777777777766666555444444555444
No 477
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.25 E-value=2.3e+02 Score=20.13 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHh
Q 043608 422 QLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFN 460 (579)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 460 (579)
++|+.....|+..|+.+|..+++...-.--.+...++++
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK 67 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLK 67 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344444444444444444444444333333333333333
No 478
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.00 E-value=2.2e+02 Score=20.10 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.2
Q ss_pred hcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHH
Q 043608 182 TKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEA 221 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 221 (579)
....+.+.+.++++.++.+...+|.....++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677888888888888888888888888877765444
No 479
>PRK09857 putative transposase; Provisional
Probab=25.55 E-value=4.4e+02 Score=24.24 Aligned_cols=65 Identities=6% Similarity=0.051 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCC
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS 332 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (579)
+..++....+.++.++..++++.+.+. .++......++..-+.+.|.-+++.++...|...|+..
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 345555555666666666666666554 23333344445555555555556666666666666554
No 480
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=25.40 E-value=5.3e+02 Score=23.76 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=14.5
Q ss_pred HHHHHHcCCCCChhhHHHHH
Q 043608 354 LLVFKELGKNADSVSWNSII 373 (579)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~ 373 (579)
..+|+.++..|+...||.++
T Consensus 74 ~~V~~~VG~ePSG~~FNsi~ 93 (300)
T TIGR03814 74 DEVWERVGVEPSGDPFNSIV 93 (300)
T ss_pred HHHHHHhCCCCCCCCccchh
Confidence 45677777777877777664
No 481
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.05 E-value=9.8e+02 Score=26.61 Aligned_cols=183 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCHHHHHHHhcc-------cCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHH---
Q 043608 176 ALIAMYTKFDRILDARNVFSG-------IARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVF--- 245 (579)
Q Consensus 176 ~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l--- 245 (579)
..++.+...+++.+|..+.++ +.+.++..|-.=+..+.+.=+--+-+.+|=.-.+.. ..+...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E--Dvt~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE--DVTKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc--cccccccccccccc
Q ss_pred ------------------HHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCCCChHHHHHH
Q 043608 246 ------------------SACSNFARILFNEIDSPDLASWNALIAGVASHS--NANEAMSLFSEMRDRELLPDGLTVHSL 305 (579)
Q Consensus 246 ------------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l 305 (579)
+..|...+..+.+ ......-...++.+|.+.+ ++++|+.++.++++.+...-......+
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl 855 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYL 855 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHh
Q ss_pred HHHhhcccchhhHHHHHHH----HHHcCCCCCchhHHHHHHHHHhc-------------CChHHHHHHHHHcC
Q 043608 306 LCACIGRLTLYQGMQVHSY----IIKMGFDSNVPVCNAILTMYAKC-------------SVLCNALLVFKELG 361 (579)
Q Consensus 306 l~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~~ 361 (579)
+-..--..-++.|+-+|+. |....-+.|+.-|--+++.+-+. +++++|++.+.++|
T Consensus 856 ~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 856 CFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSACG 928 (928)
T ss_pred eeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhhC
No 482
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.04 E-value=3.3e+02 Score=21.12 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCCCh-hHHHHHHHHhhccCchHHHHHHHH
Q 043608 486 ALKLFTRMRSLGVSPNL-VTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
..++|..|..+|+-... ..|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555544332 234444444555555555555543
No 483
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.92 E-value=3.3e+02 Score=21.11 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhCCCCCc-chhHHHHHHHHhcCChhHHHHHHH
Q 043608 521 GLHLYRIMENEYGIIPTR-EHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 521 a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
..++|..|.+. ++--.. ..|......+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46677777766 555443 356677777778888888888875
No 484
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.90 E-value=6.2e+02 Score=25.33 Aligned_cols=100 Identities=7% Similarity=-0.044 Sum_probs=56.0
Q ss_pred HHHHHHHHHH-HHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 043608 383 EELFRLFSRM-LASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNF 461 (579)
Q Consensus 383 ~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 461 (579)
+...+.++.. ...|+..+......++.. ..|+...|..+++.....+- ...++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~l--------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCC--CCcCHHHHHHHh---------------
Confidence 3444555544 345676666666555543 46888888888887653321 112222222211
Q ss_pred CCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh
Q 043608 462 MENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL 502 (579)
Q Consensus 462 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 502 (579)
--.+...+..++.+....+....|+.++.++.+.|..|..
T Consensus 244 -g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 -GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred -CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 1124444455555555545556788888888888877653
No 485
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.73 E-value=2.5e+02 Score=20.94 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCCC
Q 043608 338 NAILTMYAKCSVLCNALLVFKELGKN 363 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (579)
..++..|...++.++|...+++++.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 34555666667777777777666443
No 486
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.20 E-value=5.6e+02 Score=23.47 Aligned_cols=179 Identities=7% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHH------HHHHHHhhCCC--
Q 043608 393 LASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLG------SARKLFNFMEN-- 464 (579)
Q Consensus 393 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~-- 464 (579)
+......+...+..+++.|...|+++..-..+..+....-+.-...-..+-..+....-.+ ...+.++...+
T Consensus 44 qasD~~~~~kvl~~i~dLl~S~~~~~~Lneql~~L~kKhGQlk~sI~~MIq~vmEylKg~~dl~t~i~~ietlr~VtEgk 123 (439)
T COG5071 44 QASDTSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFKKHGQLKQSITSMIQHVMEYLKGIDDLKTKINLIETLRTVTEGK 123 (439)
T ss_pred hhccHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHcchHHHHHHHHHHHHHHhccCcccccchHhHHHHHHHHhcCc
Q ss_pred -----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHH------------HHHhhccCchHHHHHHHHH
Q 043608 465 -----PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGV------------LTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 465 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l------------~~~~~~~g~~~~a~~~~~~ 527 (579)
.....-.-|...+-..|+.+.|..++ +.....||.++ ++.|...+|+-.|--+-++
T Consensus 124 IFvEvERariT~~L~~ikee~Gdi~sA~Dil-------cn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kK 196 (439)
T COG5071 124 IFVEVERARLTQLLSQIKEEQGDIKSAQDIL-------CNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKK 196 (439)
T ss_pred eEEehhHHHHHHHHHHHHHHhcchhHHHHHH-------hcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q ss_pred HHHhhCCCCCcc-----hhHHHHHHHHhcCChhHHH----HHHHhhcCCCChhHhhhhhc
Q 043608 528 MENEYGIIPTRE-----HCSCVVDLLARAGCVHEAE----DFINQMACDADIVVWKSLLA 578 (579)
Q Consensus 528 ~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~l~~ 578 (579)
+.+.+--.|+.. .|+.+++.-.....+-+|- ++++......|..+|.-+++
T Consensus 197 I~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS 256 (439)
T COG5071 197 INKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLS 256 (439)
T ss_pred HHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhh
No 487
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.09 E-value=1.8e+02 Score=20.19 Aligned_cols=36 Identities=3% Similarity=-0.047 Sum_probs=27.2
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHH
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHI 76 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 76 (579)
+++..+.+..--++|+++++.+.++| ..+...-+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 57777778888889999999999988 6665544433
No 488
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.05 E-value=5.5e+02 Score=24.16 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 453 GSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 453 ~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
++++.+++.+.+ |+ ...|-.+++.....|.++.++.+|++++..|-.|-...-..++..+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 455555554442 33 45688888888889999999999999999998886665555555544
No 489
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=23.90 E-value=74 Score=20.97 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=16.6
Q ss_pred ChhHHHHHHHHhhhhcCCCCCc
Q 043608 14 LYNEALVAYDFSQNNTNIRIRP 35 (579)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~ 35 (579)
+++.|+..|..+...+.++++.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 6778888888888765677654
No 490
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.82 E-value=4.9e+02 Score=22.71 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=61.3
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC---chhHHH--HHHHHHHHcCCHHHHHHHHh
Q 043608 386 FRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAF---DVFVMN--GLMDIYIKCGSLGSARKLFN 460 (579)
Q Consensus 386 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~A~~~~~ 460 (579)
.++.+++.. +.+...-++.|+--|.-...+.+|-..|.. +.|+.| +...++ .-+......|++++|.+...
T Consensus 13 ~~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 13 EEWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred hhhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Confidence 344444443 455556666666555555555555555543 344444 333333 35666789999999999998
Q ss_pred hCC----CCChhhHHHHH----HHHHhcCCcHHHHHHHHHHH
Q 043608 461 FME----NPDVVSWSSLI----LGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 461 ~~~----~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~m~ 494 (579)
.+- +.|...+-.|. --..+.|..++|+++.+.=.
T Consensus 89 ~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 89 QLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 876 34433332222 12457777888887776544
No 491
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.59 E-value=5.9e+02 Score=23.55 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHcCC----CCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043608 316 YQGMQVHSYIIKMGF----DSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSR 391 (579)
Q Consensus 316 ~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 391 (579)
+.+.+.++.....+. ..++.....++....+.|+.+.-..+++.....++......++.+++...+.+...++++.
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 445555555554311 2233444444444445555444444444433333444455555555555555555555555
Q ss_pred HHHC
Q 043608 392 MLAS 395 (579)
Q Consensus 392 m~~~ 395 (579)
....
T Consensus 227 ~l~~ 230 (324)
T PF11838_consen 227 LLSN 230 (324)
T ss_dssp HHCT
T ss_pred HcCC
Confidence 5543
No 492
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=23.50 E-value=2.8e+02 Score=19.81 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=41.2
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHH
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
......+-.-|-+.|-.+.+.+.+......-| ...+...|+.++..++--.-|..++
T Consensus 32 d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg---~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 32 DPAIDNLAYEYDREGLYEQAYQLLRRFIQSEG---KKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hhHHHHHHhhcccccHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHccchHHHHHHh
Confidence 33455566667788888888888888876523 3367788888888888777777665
No 493
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=23.42 E-value=5.7e+02 Score=23.25 Aligned_cols=50 Identities=2% Similarity=-0.104 Sum_probs=24.3
Q ss_pred hHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 043608 350 LCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKP 399 (579)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p 399 (579)
...|...|+.....-.......+...|.. ..+..+|..+|++..+.|..+
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh
Confidence 44455555444332233333334333333 225666666776666666444
No 494
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=23.02 E-value=2.7e+02 Score=19.30 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=5.8
Q ss_pred ChhHHHHHHHHhhccC
Q 043608 501 NLVTLVGVLTACSHVG 516 (579)
Q Consensus 501 ~~~~~~~l~~~~~~~g 516 (579)
|..+-...+.++.+.|
T Consensus 44 ~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 44 DPMVRRAAARALGRIG 59 (88)
T ss_dssp SHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
No 495
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=23.00 E-value=4.7e+02 Score=22.19 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=14.3
Q ss_pred hccCchHHHHHHHHHHHHh
Q 043608 513 SHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~ 531 (579)
.+.|+++.|.++++-|.+-
T Consensus 132 l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 132 LRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3567888888888888764
No 496
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.99 E-value=2.1e+02 Score=24.59 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCC
Q 043608 217 YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSN 279 (579)
Q Consensus 217 ~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 279 (579)
..+.|..++.+|--..+ ++|.-.......-|..+..+|.+.|-
T Consensus 136 ~vetAiaml~dmG~~Si--------------------KffPM~Gl~~leE~~avA~aca~~g~ 178 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSV--------------------KFFPMGGLKHLEEYAAVAKACAKHGF 178 (236)
T ss_pred eHHHHHHHHHHcCCCee--------------------eEeecCCcccHHHHHHHHHHHHHcCC
Confidence 35778888888754432 11111112445567777777777663
No 497
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=22.98 E-value=7e+02 Score=24.15 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=17.3
Q ss_pred HHhhCCCCChhhHHHHHHHHHhcCCc
Q 043608 458 LFNFMENPDVVSWSSLILGYAQFGCG 483 (579)
Q Consensus 458 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 483 (579)
+++.+..||+..|.++...++--+-+
T Consensus 228 LLNylTaPnVlIwsAv~aS~a~p~~~ 253 (391)
T cd07229 228 LLNYLTAPNVLIWSAALASNASSAAL 253 (391)
T ss_pred eeecCCCCCchHHHHHHHHcCCcccc
Confidence 44444568999998887776654433
No 498
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=22.95 E-value=6.4e+02 Score=23.72 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 500 PNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 500 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
||......++++.+...........++.+..
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~ 258 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAILIDALLQ 258 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHHHHHHHhc
Confidence 5555555666665554444444443444443
No 499
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.67 E-value=7.7e+02 Score=24.52 Aligned_cols=146 Identities=8% Similarity=0.025 Sum_probs=65.0
Q ss_pred HHHHhhcchhhhhhhhHHHHHHHhCCCCChhH--HHHHHHH-----HHccCChhhHHHhhcCCCC---CCeeehhHHhhh
Q 043608 41 LISACSSLRSLQLGRKVHDHILLSKCQPDVVL--QNHILNM-----YGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAG 110 (579)
Q Consensus 41 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~-----~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 110 (579)
.+...++.|+. ++++.+++.|..++... ....+.. .+..|..+-+.-+++.-.. ++....+.|..+
T Consensus 38 ~L~~A~~~~~~----~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A 113 (480)
T PHA03100 38 PLYLAKEARNI----DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYA 113 (480)
T ss_pred hhhhhhccCCH----HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHH
Confidence 33344445554 45555556665554321 1233344 4556666666666655433 233334444443
Q ss_pred hh-cCCChhhHHHHHHHHHHCCCCCCccc--HHHHHHHhcCCCcchhHHHHHHHHHHhccCCChh--HHHHHHHHHhcCC
Q 043608 111 CS-QNYQENDAIKLYIQMLQSGVMPGQFT--FGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLI--AQNALIAMYTKFD 185 (579)
Q Consensus 111 ~~-~~~~~~~a~~~~~~~~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 185 (579)
.. ..|+. ++++.+.+.|..++... -...+..++..|. .-.++.+.+.+.|..++.. .-.+.+...+..|
T Consensus 114 ~~~~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~ 187 (480)
T PHA03100 114 ISKKSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG 187 (480)
T ss_pred HhcccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC
Confidence 32 44444 34444555565443221 1233444444441 1123344444555433321 1122344455556
Q ss_pred CHHHHHHHhcc
Q 043608 186 RILDARNVFSG 196 (579)
Q Consensus 186 ~~~~a~~~~~~ 196 (579)
+.+-+.-+++.
T Consensus 188 ~~~iv~~Ll~~ 198 (480)
T PHA03100 188 NIDVIKFLLDN 198 (480)
T ss_pred CHHHHHHHHHc
Confidence 66555555544
No 500
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=6e+02 Score=23.15 Aligned_cols=202 Identities=9% Similarity=0.043 Sum_probs=106.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 043608 208 MIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLF 287 (579)
Q Consensus 208 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 287 (579)
+.+-..+.+++++|...+.++..+|+ ..|..+.+. ...+...+...|...|+....-+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~-s~dek~~nE-------------------qE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGV-SKDEKTLNE-------------------QEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCC-ChhhhhhhH-------------------HHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44556778899999999999999998 444433222 1223444667777777766555544
Q ss_pred HHHH----hCCCCCChHHHHHHHHHhhcc-cchhhHHHHHHHHHHcCCCCC-----chhHHHHHHHHHhcCChHHHHHHH
Q 043608 288 SEMR----DRELLPDGLTVHSLLCACIGR-LTLYQGMQVHSYIIKMGFDSN-----VPVCNAILTMYAKCSVLCNALLVF 357 (579)
Q Consensus 288 ~~m~----~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~ 357 (579)
.... .-.-+.......+++.-+... ..++..+.+....++...+-. ...-.-++..+.+.|.+.+|+.+.
T Consensus 69 ~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 69 TSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3322 211122233445555555433 445555555555544322211 122234677888899999988765
Q ss_pred HH-------cCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHHHHH----CCCCCcHhHHHHHHHHH--hccCChHHHHHH
Q 043608 358 KE-------LGKNADSVSWNSI-IAACLQHNQAEELFRLFSRMLA----SQIKPDHITFNDVMGAC--AKMASLEMVTQL 423 (579)
Q Consensus 358 ~~-------~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~l~~~~--~~~~~~~~a~~~ 423 (579)
.. +..+|+..+...+ -..|...++..++..-+...+. .-++|-...-.-++++. |...++..|..+
T Consensus 149 n~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SY 228 (421)
T COG5159 149 NPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSY 228 (421)
T ss_pred HHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHH
Confidence 43 3555555443222 2234344444443333322221 12344444444444443 445566777776
Q ss_pred HHHHHH
Q 043608 424 HCYITK 429 (579)
Q Consensus 424 ~~~~~~ 429 (579)
|-+..+
T Consensus 229 F~Ea~E 234 (421)
T COG5159 229 FIEALE 234 (421)
T ss_pred HHHHHh
Confidence 655553
Done!