Query 043608
Match_columns 579
No_of_seqs 612 out of 2555
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 11:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.5E-40 2.9E-44 333.8 39.3 474 35-548 84-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.5E-39 8.7E-44 330.3 38.4 482 80-575 63-589 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.4E-29 1.2E-33 243.6 23.7 185 265-449 27-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.2E-28 4.2E-33 239.6 23.0 185 203-414 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-25 5.6E-30 215.0 36.3 374 5-450 5-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 6.7E-25 2.3E-29 210.7 40.5 373 109-552 7-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 4.5E-22 1.5E-26 198.9 31.3 447 5-503 12-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.8E-21 1.3E-25 192.1 37.0 421 102-531 7-478 (514)
9 3fp2_A TPR repeat-containing p 99.9 6.5E-21 2.2E-25 191.6 36.3 429 35-495 25-490 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.1E-20 3.7E-25 185.4 33.7 325 170-529 25-407 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.8E-20 6.3E-25 183.7 34.9 334 201-570 25-414 (450)
12 3fp2_A TPR repeat-containing p 99.9 3E-20 1E-24 186.7 34.8 418 104-531 28-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 3.9E-17 1.3E-21 154.7 33.5 309 202-564 3-332 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 5E-17 1.7E-21 154.0 33.4 280 264-574 3-310 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 1.5E-14 5E-19 149.7 50.3 477 39-560 843-1377(1630)
16 1xi4_A Clathrin heavy chain; a 99.8 5.6E-15 1.9E-19 152.7 46.6 377 37-487 987-1375(1630)
17 2xm6_A Protein corresponding t 99.8 9.2E-16 3.1E-20 151.5 39.3 335 149-531 56-432 (490)
18 2xm6_A Protein corresponding t 99.8 2E-15 6.7E-20 149.2 40.0 392 54-530 26-466 (490)
19 1b89_A Protein (clathrin heavy 99.8 1.9E-16 6.6E-21 146.5 29.5 377 1-422 34-425 (449)
20 3hym_B Cell division cycle pro 99.8 1.7E-16 5.7E-21 148.5 29.2 279 262-548 20-314 (330)
21 1b89_A Protein (clathrin heavy 99.8 5E-17 1.7E-21 150.4 24.2 280 148-489 15-304 (449)
22 3hym_B Cell division cycle pro 99.8 3.7E-16 1.3E-20 146.1 30.5 286 201-519 21-322 (330)
23 1fch_A Peroxisomal targeting s 99.8 4.9E-17 1.7E-21 154.7 23.8 285 277-564 38-356 (368)
24 2ooe_A Cleavage stimulation fa 99.8 1.3E-15 4.4E-20 152.1 34.1 399 32-496 10-492 (530)
25 2ooe_A Cleavage stimulation fa 99.8 3.8E-15 1.3E-19 148.7 36.8 401 135-564 12-489 (530)
26 1fch_A Peroxisomal targeting s 99.8 1.4E-16 4.7E-21 151.6 23.2 267 174-492 67-355 (368)
27 4eqf_A PEX5-related protein; a 99.7 5.3E-16 1.8E-20 147.3 23.7 259 302-564 68-353 (365)
28 4eqf_A PEX5-related protein; a 99.7 6.5E-16 2.2E-20 146.6 22.4 274 201-527 64-352 (365)
29 3mkr_A Coatomer subunit epsilo 99.7 4.8E-15 1.7E-19 134.6 25.0 249 148-431 11-265 (291)
30 3cv0_A Peroxisome targeting si 99.7 4.5E-15 1.5E-19 138.5 25.5 256 176-463 26-313 (327)
31 3cv0_A Peroxisome targeting si 99.7 3.5E-15 1.2E-19 139.2 24.5 261 263-564 20-312 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.7E-20 139.0 20.3 244 272-530 7-263 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-17 4.4E-22 166.8 7.7 132 202-360 127-262 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.7 2.8E-17 9.5E-22 164.4 9.1 129 333-461 126-261 (1134)
35 3e4b_A ALGK; tetratricopeptide 99.7 5.9E-14 2E-18 136.2 29.3 347 40-432 8-389 (452)
36 4g1t_A Interferon-induced prot 99.7 1.9E-13 6.4E-18 134.7 33.3 364 172-573 52-469 (472)
37 4g1t_A Interferon-induced prot 99.7 2.3E-14 7.9E-19 141.2 25.4 251 276-540 187-468 (472)
38 3e4b_A ALGK; tetratricopeptide 99.6 9.8E-14 3.3E-18 134.7 22.3 173 348-530 231-420 (452)
39 3u4t_A TPR repeat-containing p 99.6 7.2E-13 2.5E-17 119.8 24.9 233 336-570 5-254 (272)
40 2pl2_A Hypothetical conserved 99.6 1.8E-13 6.2E-18 118.6 18.3 195 365-565 4-212 (217)
41 3uq3_A Heat shock protein STI1 99.6 2.8E-13 9.6E-18 121.4 19.4 215 301-564 7-233 (258)
42 2ho1_A Type 4 fimbrial biogene 99.5 2.1E-12 7.2E-17 115.2 22.3 206 366-576 37-248 (252)
43 3uq3_A Heat shock protein STI1 99.5 1.5E-12 5.3E-17 116.5 21.6 224 264-530 5-235 (258)
44 2pl2_A Hypothetical conserved 99.5 1.9E-12 6.4E-17 112.2 20.6 196 331-529 2-212 (217)
45 2vq2_A PILW, putative fimbrial 99.5 2.6E-12 8.8E-17 112.4 21.7 208 366-578 8-223 (225)
46 1ouv_A Conserved hypothetical 99.5 1E-11 3.5E-16 112.2 25.8 217 335-564 7-248 (273)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.8E-13 6E-18 124.1 13.7 220 8-232 14-245 (275)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 3E-12 1E-16 115.9 20.9 216 275-495 16-243 (275)
49 2ho1_A Type 4 fimbrial biogene 99.5 1E-11 3.5E-16 110.7 22.9 193 337-531 40-238 (252)
50 3u4t_A TPR repeat-containing p 99.5 1.4E-11 4.7E-16 111.3 24.0 238 204-496 5-250 (272)
51 1ouv_A Conserved hypothetical 99.5 3.5E-11 1.2E-15 108.7 26.6 224 261-531 3-251 (273)
52 2vq2_A PILW, putative fimbrial 99.5 2.3E-11 8E-16 106.2 23.5 204 334-541 8-218 (225)
53 2q7f_A YRRB protein; TPR, prot 99.5 2.5E-12 8.6E-17 114.0 17.4 192 368-564 25-219 (243)
54 4a1s_A PINS, partner of inscut 99.4 1.8E-12 6.2E-17 125.1 16.3 268 267-564 51-369 (411)
55 4e6h_A MRNA 3'-END-processing 99.4 6.5E-10 2.2E-14 111.5 34.8 459 17-514 50-586 (679)
56 3sf4_A G-protein-signaling mod 99.4 1.9E-12 6.7E-17 124.6 15.6 293 261-555 6-364 (406)
57 2q7f_A YRRB protein; TPR, prot 99.4 6.2E-12 2.1E-16 111.4 17.7 196 333-531 22-222 (243)
58 3sf4_A G-protein-signaling mod 99.4 5.3E-12 1.8E-16 121.5 18.6 268 297-564 7-333 (406)
59 2h6f_A Protein farnesyltransfe 99.4 1.7E-11 5.7E-16 115.1 21.1 228 335-569 98-351 (382)
60 3ro2_A PINS homolog, G-protein 99.4 3.9E-12 1.3E-16 118.9 16.9 269 266-564 7-329 (338)
61 4e6h_A MRNA 3'-END-processing 99.4 2.3E-09 7.7E-14 107.6 36.1 444 51-548 48-584 (679)
62 4a1s_A PINS, partner of inscut 99.4 5.2E-12 1.8E-16 121.9 16.1 269 203-531 49-372 (411)
63 2h6f_A Protein farnesyltransfe 99.4 1.8E-10 6.3E-15 108.1 24.7 215 201-449 96-322 (382)
64 3ro2_A PINS homolog, G-protein 99.4 1.8E-11 6.3E-16 114.3 17.8 275 204-531 7-332 (338)
65 3ulq_A Response regulator aspa 99.3 7.4E-11 2.5E-15 112.4 20.9 233 270-531 109-368 (383)
66 3ulq_A Response regulator aspa 99.3 4.6E-11 1.6E-15 113.9 18.0 222 340-564 109-365 (383)
67 3vtx_A MAMA; tetratricopeptide 99.3 1E-10 3.5E-15 98.5 18.0 169 365-569 4-173 (184)
68 2ond_A Cleavage stimulation fa 99.3 3.6E-10 1.2E-14 103.8 21.9 212 316-531 33-270 (308)
69 3vtx_A MAMA; tetratricopeptide 99.3 6.3E-10 2.2E-14 93.6 19.9 161 333-495 4-169 (184)
70 4abn_A Tetratricopeptide repea 99.3 1.5E-10 5.1E-15 113.1 17.3 190 333-526 101-316 (474)
71 4abn_A Tetratricopeptide repea 99.3 8.1E-11 2.8E-15 115.0 15.4 207 350-564 84-318 (474)
72 2ond_A Cleavage stimulation fa 99.2 6.2E-09 2.1E-13 95.6 26.7 213 219-496 33-270 (308)
73 3nf1_A KLC 1, kinesin light ch 99.2 7.9E-11 2.7E-15 108.6 13.8 230 333-564 26-304 (311)
74 1hz4_A MALT regulatory protein 99.2 8.6E-09 2.9E-13 97.7 28.2 263 269-531 19-322 (373)
75 3nf1_A KLC 1, kinesin light ch 99.2 7.2E-11 2.5E-15 108.9 12.4 239 264-531 27-307 (311)
76 3q15_A PSP28, response regulat 99.2 7.3E-10 2.5E-14 105.2 19.4 300 262-564 8-362 (378)
77 1hz4_A MALT regulatory protein 99.2 4.6E-09 1.6E-13 99.6 23.8 258 307-564 22-319 (373)
78 3q15_A PSP28, response regulat 99.2 2.5E-09 8.5E-14 101.5 21.6 230 270-530 107-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.2 3.8E-10 1.3E-14 94.9 13.9 161 368-564 10-170 (186)
80 3as5_A MAMA; tetratricopeptide 99.1 2E-09 6.8E-14 90.5 16.3 164 334-531 8-173 (186)
81 3mv2_B Coatomer subunit epsilo 99.1 8.8E-09 3E-13 91.5 19.2 239 271-530 20-281 (310)
82 4i17_A Hypothetical protein; T 99.1 3.2E-09 1.1E-13 92.7 16.0 197 364-572 5-215 (228)
83 4i17_A Hypothetical protein; T 99.1 2.1E-08 7.2E-13 87.5 19.8 195 332-539 5-214 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.0 5.4E-09 1.9E-13 106.2 17.8 161 366-530 9-173 (723)
85 4gyw_A UDP-N-acetylglucosamine 99.0 4E-09 1.4E-13 107.2 16.8 159 400-564 8-171 (723)
86 1qqe_A Vesicular transport pro 99.0 8E-09 2.7E-13 93.9 15.9 201 349-564 32-266 (292)
87 3edt_B KLC 2, kinesin light ch 99.0 2.5E-09 8.7E-14 96.8 12.5 217 346-564 13-278 (283)
88 3mv2_B Coatomer subunit epsilo 99.0 1.2E-07 4.1E-12 84.2 21.7 180 385-569 85-285 (310)
89 3edt_B KLC 2, kinesin light ch 98.9 9.1E-09 3.1E-13 93.1 13.6 29 502-530 252-280 (283)
90 2fo7_A Synthetic consensus TPR 98.9 1.9E-08 6.4E-13 79.3 13.3 123 439-564 4-129 (136)
91 3qky_A Outer membrane assembly 98.9 6.5E-08 2.2E-12 86.4 16.5 184 333-531 14-224 (261)
92 1qqe_A Vesicular transport pro 98.9 1.8E-07 6.3E-12 84.8 19.1 187 309-495 47-268 (292)
93 2uy1_A Cleavage stimulation fa 98.9 1.1E-06 3.7E-11 85.7 25.3 376 48-495 7-412 (493)
94 3qou_A Protein YBBN; thioredox 98.9 1.7E-07 5.9E-12 84.7 18.5 162 398-564 114-281 (287)
95 2uy1_A Cleavage stimulation fa 98.8 4.4E-06 1.5E-10 81.4 27.8 198 351-564 196-410 (493)
96 3urz_A Uncharacterized protein 98.8 5.5E-08 1.9E-12 83.3 12.9 183 367-575 5-195 (208)
97 2fo7_A Synthetic consensus TPR 98.8 2.5E-07 8.5E-12 72.6 15.8 129 369-531 4-132 (136)
98 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.1E-07 1.1E-11 78.9 16.7 119 406-529 11-148 (213)
99 3qky_A Outer membrane assembly 98.8 1.1E-06 3.7E-11 78.4 20.7 187 201-431 14-225 (261)
100 3rjv_A Putative SEL1 repeat pr 98.8 5.3E-07 1.8E-11 77.3 17.8 158 365-531 17-197 (212)
101 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.5E-07 1.5E-11 78.7 17.5 182 365-564 3-210 (225)
102 2r5s_A Uncharacterized protein 98.8 1.8E-07 6.2E-12 77.6 14.3 154 405-564 10-170 (176)
103 2pzi_A Probable serine/threoni 98.7 1.7E-07 5.7E-12 95.9 16.0 181 377-564 402-602 (681)
104 3urz_A Uncharacterized protein 98.7 2.3E-07 7.8E-12 79.4 14.3 158 336-495 6-185 (208)
105 2ifu_A Gamma-SNAP; membrane fu 98.7 1.9E-07 6.5E-12 85.4 14.0 160 277-463 4-182 (307)
106 2r5s_A Uncharacterized protein 98.7 4.3E-08 1.5E-12 81.4 8.8 61 37-98 8-68 (176)
107 2pzi_A Probable serine/threoni 98.7 5.1E-08 1.7E-12 99.7 11.0 165 49-217 405-583 (681)
108 2yhc_A BAMD, UPF0169 lipoprote 98.7 9.5E-07 3.2E-11 76.6 17.6 180 333-531 3-213 (225)
109 3qou_A Protein YBBN; thioredox 98.7 6.7E-07 2.3E-11 80.8 17.2 172 190-392 105-281 (287)
110 3rjv_A Putative SEL1 repeat pr 98.7 3.4E-06 1.2E-10 72.2 20.3 162 262-432 16-199 (212)
111 2ifu_A Gamma-SNAP; membrane fu 98.6 5.3E-07 1.8E-11 82.5 14.9 225 311-560 3-254 (307)
112 4ga2_A E3 SUMO-protein ligase 98.6 5.1E-07 1.7E-11 72.4 13.0 139 179-348 5-148 (150)
113 2vsy_A XCC0866; transferase, g 98.6 4.2E-07 1.4E-11 91.3 13.6 150 379-531 2-157 (568)
114 4ga2_A E3 SUMO-protein ligase 98.6 1.5E-07 5.2E-12 75.6 8.3 107 441-552 36-148 (150)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5.8E-06 2E-10 70.9 18.1 129 174-330 9-152 (213)
116 3u3w_A Transcriptional activat 98.5 9.7E-06 3.3E-10 73.5 20.0 90 270-359 81-180 (293)
117 2vsy_A XCC0866; transferase, g 98.5 1.5E-06 5E-11 87.3 14.9 149 347-497 2-158 (568)
118 3u3w_A Transcriptional activat 98.5 1.1E-05 3.7E-10 73.2 19.2 160 372-531 81-266 (293)
119 2qfc_A PLCR protein; TPR, HTH, 98.5 5.2E-06 1.8E-10 75.3 17.1 162 368-529 77-264 (293)
120 3dra_A Protein farnesyltransfe 98.5 1.4E-05 4.7E-10 71.9 19.1 221 6-231 39-287 (306)
121 3dra_A Protein farnesyltransfe 98.5 4.8E-05 1.6E-09 68.3 22.6 51 380-431 124-176 (306)
122 3gw4_A Uncharacterized protein 98.5 9.6E-07 3.3E-11 75.1 10.9 153 377-530 3-175 (203)
123 3gyz_A Chaperone protein IPGC; 98.5 1.2E-06 4.1E-11 69.9 10.5 91 438-529 38-131 (151)
124 1a17_A Serine/threonine protei 98.4 2.2E-06 7.6E-11 70.1 12.0 122 439-564 16-143 (166)
125 4f3v_A ESX-1 secretion system 98.4 7.1E-06 2.4E-10 71.9 15.0 135 440-576 106-247 (282)
126 4gco_A Protein STI-1; structur 98.4 2.8E-06 9.6E-11 65.6 10.9 91 471-564 17-107 (126)
127 2qfc_A PLCR protein; TPR, HTH, 98.4 9.5E-06 3.3E-10 73.6 16.1 162 403-564 77-263 (293)
128 2vgx_A Chaperone SYCD; alterna 98.4 7.8E-07 2.7E-11 71.1 7.2 96 435-531 20-118 (148)
129 1na0_A Designed protein CTPR3; 98.4 6E-06 2.1E-10 63.4 12.2 93 437-530 10-105 (125)
130 2lni_A Stress-induced-phosphop 98.4 4.7E-06 1.6E-10 65.0 11.4 115 435-552 15-132 (133)
131 4gcn_A Protein STI-1; structur 98.3 3.6E-06 1.2E-10 65.1 10.4 105 469-574 10-120 (127)
132 3gw4_A Uncharacterized protein 98.3 4E-06 1.4E-10 71.2 11.5 150 346-495 4-175 (203)
133 2e2e_A Formate-dependent nitri 98.3 2.5E-06 8.4E-11 70.8 9.7 120 8-130 19-144 (177)
134 2e2e_A Formate-dependent nitri 98.3 6E-06 2.1E-10 68.3 11.8 118 412-531 21-144 (177)
135 4gco_A Protein STI-1; structur 98.3 6.2E-06 2.1E-10 63.6 11.0 94 437-531 14-110 (126)
136 2vyi_A SGTA protein; chaperone 98.3 8.2E-06 2.8E-10 63.3 11.9 116 436-554 12-130 (131)
137 1a17_A Serine/threonine protei 98.3 1.8E-05 6.3E-10 64.4 14.3 122 407-530 19-145 (166)
138 2xcb_A PCRH, regulatory protei 98.3 4.1E-06 1.4E-10 66.4 9.3 94 437-531 19-115 (142)
139 2c2l_A CHIP, carboxy terminus 98.3 2.9E-06 9.8E-11 76.3 9.3 92 301-393 6-99 (281)
140 2kck_A TPR repeat; tetratricop 98.3 6.1E-06 2.1E-10 62.0 9.8 95 467-564 6-103 (112)
141 1na0_A Designed protein CTPR3; 98.3 3.4E-05 1.2E-09 59.1 14.3 99 202-329 9-107 (125)
142 1p5q_A FKBP52, FK506-binding p 98.2 7E-06 2.4E-10 75.9 11.8 86 468-557 197-283 (336)
143 3gyz_A Chaperone protein IPGC; 98.2 1.2E-05 4E-10 64.1 11.4 100 201-329 35-134 (151)
144 3q7a_A Farnesyltransferase alp 98.2 8.3E-05 2.8E-09 67.5 18.1 218 9-231 64-331 (349)
145 4f3v_A ESX-1 secretion system 98.2 2.1E-05 7.3E-10 68.9 13.5 124 339-463 107-235 (282)
146 2c2l_A CHIP, carboxy terminus 98.2 5.5E-06 1.9E-10 74.5 10.0 95 367-463 5-99 (281)
147 2vgx_A Chaperone SYCD; alterna 98.2 2.4E-05 8.2E-10 62.3 12.5 92 470-564 24-115 (148)
148 3upv_A Heat shock protein STI1 98.2 9.2E-06 3.1E-10 62.7 9.8 91 471-564 8-98 (126)
149 1elw_A TPR1-domain of HOP; HOP 98.2 1.7E-05 5.8E-10 60.1 11.1 93 469-564 6-98 (118)
150 1p5q_A FKBP52, FK506-binding p 98.2 2.7E-05 9.1E-10 72.0 14.1 144 365-530 146-293 (336)
151 4b4t_Q 26S proteasome regulato 98.2 2.8E-05 9.7E-10 75.0 15.1 121 341-461 11-160 (434)
152 2vyi_A SGTA protein; chaperone 98.2 5.4E-05 1.8E-09 58.5 14.0 119 201-349 11-129 (131)
153 4gcn_A Protein STI-1; structur 98.1 1.6E-05 5.5E-10 61.4 10.0 103 438-543 10-121 (127)
154 2lni_A Stress-induced-phosphop 98.1 5.9E-05 2E-09 58.6 13.5 99 201-328 15-113 (133)
155 3sz7_A HSC70 cochaperone (SGT) 98.1 2.1E-05 7.2E-10 64.0 11.1 95 436-531 11-108 (164)
156 2xcb_A PCRH, regulatory protei 98.1 4E-05 1.4E-09 60.5 11.9 93 469-564 20-112 (142)
157 1elr_A TPR2A-domain of HOP; HO 98.1 1.4E-05 4.9E-10 61.9 9.2 94 437-530 5-107 (131)
158 3sz7_A HSC70 cochaperone (SGT) 98.1 3.8E-05 1.3E-09 62.5 11.4 96 466-564 10-105 (164)
159 1hxi_A PEX5, peroxisome target 98.1 1.9E-05 6.6E-10 60.3 9.1 96 470-569 20-117 (121)
160 3q49_B STIP1 homology and U bo 98.1 4.1E-05 1.4E-09 60.0 11.1 97 434-531 7-106 (137)
161 2dba_A Smooth muscle cell asso 98.1 4.1E-05 1.4E-09 60.9 11.3 93 468-564 29-125 (148)
162 1elw_A TPR1-domain of HOP; HOP 98.1 6.9E-05 2.4E-09 56.6 12.1 93 437-530 5-100 (118)
163 3q7a_A Farnesyltransferase alp 98.0 0.0074 2.5E-07 54.8 27.8 173 213-451 65-257 (349)
164 3upv_A Heat shock protein STI1 98.0 6.8E-05 2.3E-09 57.7 11.5 94 437-531 5-101 (126)
165 1elr_A TPR2A-domain of HOP; HO 98.0 2.6E-05 9E-10 60.4 9.2 94 470-564 7-105 (131)
166 2fbn_A 70 kDa peptidylprolyl i 98.0 2.6E-05 9E-10 65.8 9.7 161 178-352 11-174 (198)
167 2xev_A YBGF; tetratricopeptide 98.0 5.1E-05 1.7E-09 58.7 10.1 87 442-530 8-104 (129)
168 3ro3_A PINS homolog, G-protein 98.0 3.2E-05 1.1E-09 62.6 9.3 126 439-564 12-155 (164)
169 2kck_A TPR repeat; tetratricop 98.0 0.00013 4.5E-09 54.4 12.1 65 263-328 39-106 (112)
170 2dba_A Smooth muscle cell asso 98.0 9.5E-05 3.2E-09 58.7 11.8 96 435-531 27-128 (148)
171 3q49_B STIP1 homology and U bo 98.0 9.2E-05 3.2E-09 57.9 11.5 95 467-564 9-103 (137)
172 4b4t_Q 26S proteasome regulato 98.0 0.00057 2E-08 65.8 19.4 209 209-428 11-243 (434)
173 2fbn_A 70 kDa peptidylprolyl i 97.9 5.9E-05 2E-09 63.6 10.4 93 468-564 89-183 (198)
174 3k9i_A BH0479 protein; putativ 97.9 1.5E-05 5E-10 60.6 5.0 82 449-531 3-90 (117)
175 3lvg_A Clathrin heavy chain 1; 97.9 5.1E-06 1.7E-10 76.5 2.6 119 69-198 53-171 (624)
176 2xev_A YBGF; tetratricopeptide 97.9 0.0003 1E-08 54.2 12.6 89 471-564 6-102 (129)
177 1hxi_A PEX5, peroxisome target 97.8 3.8E-05 1.3E-09 58.6 7.0 93 37-130 19-114 (121)
178 3ro3_A PINS homolog, G-protein 97.8 7.2E-05 2.5E-09 60.4 8.8 63 469-531 91-158 (164)
179 3rkv_A Putative peptidylprolyl 97.8 8.3E-05 2.9E-09 60.3 8.6 95 436-531 11-126 (162)
180 3lvg_A Clathrin heavy chain 1; 97.8 5.8E-06 2E-10 76.1 1.7 452 1-524 56-534 (624)
181 2l6j_A TPR repeat-containing p 97.8 2.4E-05 8.3E-10 58.6 5.0 96 466-565 3-105 (111)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00016 5.6E-09 69.9 11.5 137 401-558 268-405 (457)
183 1wao_1 Serine/threonine protei 97.8 1.3E-05 4.4E-10 77.9 3.8 120 3-125 10-134 (477)
184 1wao_1 Serine/threonine protei 97.7 4.6E-05 1.6E-09 74.1 7.2 112 447-562 17-134 (477)
185 3dss_A Geranylgeranyl transfer 97.7 0.012 4.1E-07 53.2 22.2 162 365-530 107-303 (331)
186 3k9i_A BH0479 protein; putativ 97.7 8.5E-05 2.9E-09 56.3 6.8 83 480-564 3-87 (117)
187 1ihg_A Cyclophilin 40; ppiase 97.7 0.00017 5.7E-09 67.4 10.1 138 402-559 224-362 (370)
188 3dss_A Geranylgeranyl transfer 97.7 0.01 3.5E-07 53.6 20.9 181 382-569 90-307 (331)
189 2if4_A ATFKBP42; FKBP-like, al 97.6 9.6E-05 3.3E-09 68.3 7.2 150 401-569 179-331 (338)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00056 1.9E-08 66.1 12.4 142 365-529 267-413 (457)
191 2l6j_A TPR repeat-containing p 97.6 0.00011 3.9E-09 54.8 6.0 94 2-98 7-106 (111)
192 2hr2_A Hypothetical protein; a 97.5 0.00051 1.7E-08 54.1 9.1 93 470-564 14-128 (159)
193 3rkv_A Putative peptidylprolyl 97.5 0.00068 2.3E-08 54.8 10.3 95 402-496 12-126 (162)
194 2hr2_A Hypothetical protein; a 97.5 0.00046 1.6E-08 54.4 8.6 63 469-531 59-131 (159)
195 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00018 6.3E-09 66.4 7.3 90 4-97 184-291 (338)
196 3ma5_A Tetratricopeptide repea 97.4 0.00044 1.5E-08 50.4 7.4 65 466-531 6-70 (100)
197 1ihg_A Cyclophilin 40; ppiase 97.4 0.00081 2.8E-08 62.8 10.7 136 366-523 223-362 (370)
198 3n71_A Histone lysine methyltr 97.4 0.00032 1.1E-08 67.7 7.4 119 446-564 319-461 (490)
199 1klx_A Cysteine rich protein B 97.4 0.0046 1.6E-07 48.1 12.9 109 381-497 10-127 (138)
200 2kat_A Uncharacterized protein 97.3 0.00034 1.1E-08 52.7 6.0 64 466-530 18-81 (115)
201 1klx_A Cysteine rich protein B 97.3 0.0037 1.3E-07 48.7 12.1 85 344-431 35-127 (138)
202 3n71_A Histone lysine methyltr 97.3 0.0011 3.8E-08 63.9 10.6 94 438-531 353-464 (490)
203 1na3_A Designed protein CTPR2; 97.3 0.0014 4.9E-08 46.4 8.5 80 468-551 10-90 (91)
204 2kat_A Uncharacterized protein 97.3 0.0012 4.1E-08 49.6 8.2 78 484-564 2-79 (115)
205 1na3_A Designed protein CTPR2; 97.1 0.0024 8.1E-08 45.2 7.8 74 5-81 15-88 (91)
206 1dce_A Protein (RAB geranylger 97.0 0.048 1.6E-06 54.0 19.2 166 350-519 45-243 (567)
207 1dce_A Protein (RAB geranylger 96.9 0.025 8.5E-07 56.0 16.0 169 381-556 44-244 (567)
208 1zu2_A Mitochondrial import re 96.8 0.0012 4.1E-08 51.8 4.5 87 447-538 13-124 (158)
209 1zu2_A Mitochondrial import re 96.8 0.0021 7.3E-08 50.5 5.8 94 413-509 14-131 (158)
210 3ma5_A Tetratricopeptide repea 96.7 0.011 3.8E-07 42.8 8.8 64 201-292 6-69 (100)
211 3qww_A SET and MYND domain-con 96.6 0.0056 1.9E-07 58.0 8.5 86 479-564 310-408 (433)
212 3mkq_A Coatomer beta'-subunit; 96.5 0.045 1.6E-06 57.4 16.0 101 39-162 633-733 (814)
213 3ly7_A Transcriptional activat 96.5 0.059 2E-06 49.0 13.7 74 464-542 274-347 (372)
214 3qwp_A SET and MYND domain-con 96.4 0.011 3.6E-07 56.2 9.1 91 474-564 294-397 (429)
215 3ly7_A Transcriptional activat 96.4 0.025 8.7E-07 51.3 10.9 133 31-166 190-340 (372)
216 1pc2_A Mitochondria fission pr 96.4 0.018 6.1E-07 44.7 8.5 82 485-569 16-103 (152)
217 2kc7_A BFR218_protein; tetratr 96.4 0.0091 3.1E-07 43.0 6.8 82 5-97 6-88 (99)
218 2kc7_A BFR218_protein; tetratr 96.3 0.015 5.1E-07 41.8 7.5 81 473-564 6-87 (99)
219 3mkq_A Coatomer beta'-subunit; 96.3 0.097 3.3E-06 54.8 16.5 76 405-494 633-708 (814)
220 1wy6_A Hypothetical protein ST 96.2 0.26 9E-06 36.8 13.0 140 275-433 18-157 (172)
221 2v5f_A Prolyl 4-hydroxylase su 96.0 0.023 7.8E-07 41.4 7.3 67 469-538 7-79 (104)
222 3mkq_B Coatomer subunit alpha; 96.0 0.094 3.2E-06 41.8 10.9 130 409-565 13-142 (177)
223 3bee_A Putative YFRE protein; 95.9 0.12 4.1E-06 36.5 10.3 63 466-530 5-71 (93)
224 3bee_A Putative YFRE protein; 95.8 0.033 1.1E-06 39.5 7.1 73 499-575 3-80 (93)
225 3qww_A SET and MYND domain-con 95.8 0.022 7.5E-07 54.0 7.9 81 312-392 311-408 (433)
226 3qwp_A SET and MYND domain-con 95.8 0.029 9.8E-07 53.2 8.5 94 178-292 294-399 (429)
227 1wy6_A Hypothetical protein ST 95.7 0.43 1.5E-05 35.6 14.5 139 212-398 17-157 (172)
228 3mkq_B Coatomer subunit alpha; 95.0 0.51 1.7E-05 37.6 12.0 74 148-232 17-90 (177)
229 4ady_A RPN2, 26S proteasome re 94.9 4.3 0.00015 42.1 27.7 257 308-571 383-662 (963)
230 1nzn_A CGI-135 protein, fissio 94.7 0.12 4E-06 38.5 7.1 85 483-570 17-107 (126)
231 4ady_A RPN2, 26S proteasome re 94.7 4.9 0.00017 41.7 30.8 151 343-495 499-657 (963)
232 3lpz_A GET4 (YOR164C homolog); 94.4 2.7 9.1E-05 37.6 19.6 133 72-215 37-180 (336)
233 2v5f_A Prolyl 4-hydroxylase su 94.3 0.42 1.4E-05 34.5 9.5 65 435-501 4-78 (104)
234 2wpv_A GET4, UPF0363 protein Y 94.2 2.9 9.9E-05 37.1 18.5 134 71-215 34-178 (312)
235 1pc2_A Mitochondria fission pr 93.9 0.28 9.5E-06 38.1 8.0 48 383-431 15-65 (152)
236 4h7y_A Dual specificity protei 93.9 0.53 1.8E-05 36.1 9.2 48 481-529 74-121 (161)
237 3u64_A Protein TP_0956; tetrat 93.8 0.6 2.1E-05 40.7 10.6 62 468-531 200-269 (301)
238 3ffl_A Anaphase-promoting comp 93.6 0.32 1.1E-05 38.1 7.7 35 538-572 122-156 (167)
239 4b4t_P 26S proteasome regulato 93.5 5.3 0.00018 37.9 17.9 34 433-466 290-325 (445)
240 3u64_A Protein TP_0956; tetrat 93.4 0.51 1.7E-05 41.1 9.5 123 449-576 134-283 (301)
241 3o48_A Mitochondria fission 1 92.8 0.87 3E-05 34.1 8.7 72 499-571 37-112 (134)
242 4b4t_P 26S proteasome regulato 92.6 4.7 0.00016 38.3 16.0 47 348-394 30-84 (445)
243 1y8m_A FIS1; mitochondria, unk 92.2 2 6.7E-05 32.7 10.1 22 543-564 82-103 (144)
244 1qsa_A Protein (soluble lytic 92.0 11 0.00036 37.5 40.0 425 9-500 16-483 (618)
245 3ffl_A Anaphase-promoting comp 91.8 0.55 1.9E-05 36.7 7.0 60 4-63 25-91 (167)
246 4gns_B Protein CSD3, chitin bi 91.2 0.86 2.9E-05 46.1 9.5 53 474-528 344-397 (754)
247 2wpv_A GET4, UPF0363 protein Y 91.0 8 0.00028 34.3 18.6 124 182-358 24-158 (312)
248 1v54_E Cytochrome C oxidase po 91.0 1.2 4E-05 31.3 7.1 73 482-565 25-97 (109)
249 4h7y_A Dual specificity protei 90.2 4.1 0.00014 31.3 10.1 53 448-500 72-127 (161)
250 1v54_E Cytochrome C oxidase po 89.7 1.5 5.1E-05 30.7 6.7 44 465-509 43-86 (109)
251 4gns_B Protein CSD3, chitin bi 89.4 3.9 0.00013 41.5 12.5 54 509-565 344-398 (754)
252 2ff4_A Probable regulatory pro 89.3 2 6.7E-05 40.1 9.8 73 471-544 175-251 (388)
253 1nzn_A CGI-135 protein, fissio 89.0 1.6 5.4E-05 32.5 7.0 46 383-429 18-66 (126)
254 4fhn_B Nucleoporin NUP120; pro 88.7 13 0.00045 40.4 17.0 54 337-392 815-868 (1139)
255 3lpz_A GET4 (YOR164C homolog); 88.0 14 0.00049 33.0 21.5 92 287-379 82-180 (336)
256 3o48_A Mitochondria fission 1 87.4 1.8 6E-05 32.4 6.4 72 465-539 38-112 (134)
257 2ff4_A Probable regulatory pro 87.4 2.8 9.5E-05 39.0 9.5 71 204-302 173-248 (388)
258 2uwj_G Type III export protein 87.2 2.6 8.9E-05 29.3 6.5 78 50-131 21-98 (115)
259 2y69_E Cytochrome C oxidase su 87.0 2.8 9.6E-05 31.2 7.1 72 483-565 69-140 (152)
260 4b4t_R RPN7, 26S proteasome re 86.8 3.4 0.00012 39.0 9.9 57 438-494 133-195 (429)
261 2uwj_G Type III export protein 86.3 6.7 0.00023 27.4 9.6 78 151-232 21-98 (115)
262 1y8m_A FIS1; mitochondria, unk 86.2 3 0.0001 31.7 7.1 71 465-538 37-110 (144)
263 4fhn_B Nucleoporin NUP120; pro 86.0 17 0.00059 39.5 16.0 142 407-556 818-989 (1139)
264 2p58_C Putative type III secre 85.9 7.1 0.00024 27.3 9.6 78 151-232 22-99 (116)
265 3txn_A 26S proteasome regulato 84.5 25 0.00086 32.5 16.3 127 300-428 20-166 (394)
266 2y69_E Cytochrome C oxidase su 84.2 4.3 0.00015 30.3 6.9 55 454-509 71-129 (152)
267 2p58_C Putative type III secre 79.7 13 0.00045 26.0 9.2 78 416-497 22-99 (116)
268 1wdy_A 2-5A-dependent ribonucl 75.7 27 0.00093 30.1 11.3 17 444-460 224-240 (285)
269 1qsa_A Protein (soluble lytic 75.1 69 0.0024 31.8 35.3 59 174-233 75-133 (618)
270 3esl_A Checkpoint serine/threo 74.5 33 0.0011 27.9 9.9 56 480-536 92-148 (202)
271 1zbp_A Hypothetical protein VP 73.5 4.6 0.00016 34.6 5.0 61 475-539 5-65 (273)
272 1wdy_A 2-5A-dependent ribonucl 72.9 36 0.0012 29.3 11.3 55 76-135 8-66 (285)
273 1zbp_A Hypothetical protein VP 72.7 6 0.0002 33.9 5.5 117 6-130 4-129 (273)
274 4b4t_S RPN3, 26S proteasome re 70.5 22 0.00076 34.0 9.3 119 102-227 232-366 (523)
275 4b4t_R RPN7, 26S proteasome re 68.5 52 0.0018 30.9 11.7 94 336-429 133-236 (429)
276 2nsz_A Programmed cell death p 65.9 39 0.0013 25.2 8.3 67 337-403 10-80 (129)
277 3kea_A K1L; tropism, ANK repea 63.2 71 0.0024 27.7 11.0 15 286-300 210-224 (285)
278 3esl_A Checkpoint serine/threo 62.4 62 0.0021 26.3 10.8 68 204-298 82-149 (202)
279 3hra_A Ankyrin repeat family p 62.0 33 0.0011 27.7 8.2 152 274-435 12-172 (201)
280 2ion_A PDCD4, programmed cell 59.5 33 0.0011 26.5 7.0 66 337-402 12-81 (152)
281 4a1g_A Mitotic checkpoint seri 56.6 66 0.0023 24.8 9.7 80 453-536 52-134 (152)
282 4b4t_S RPN3, 26S proteasome re 55.8 47 0.0016 31.8 8.6 58 2-63 234-298 (523)
283 2nsz_A Programmed cell death p 55.0 63 0.0021 24.1 8.4 63 439-501 10-77 (129)
284 2d2s_A Exocyst complex compone 54.9 38 0.0013 28.5 7.2 22 6-27 25-46 (235)
285 1ug3_A EIF4GI, eukaryotic prot 53.6 1.3E+02 0.0043 27.1 14.3 59 175-233 15-77 (339)
286 2ion_A PDCD4, programmed cell 53.3 50 0.0017 25.5 7.1 63 439-501 12-79 (152)
287 3ltm_A Alpha-REP4; protein eng 51.5 96 0.0033 25.2 19.7 92 434-530 93-184 (211)
288 1n11_A Ankyrin; clathrin, BAND 51.3 1.3E+02 0.0044 28.0 11.4 22 77-98 18-39 (437)
289 3kae_A CDC27, possible protein 50.7 90 0.0031 24.6 8.2 80 448-529 45-141 (242)
290 3eiq_C Programmed cell death p 50.3 1.5E+02 0.005 26.9 16.9 69 337-405 220-292 (358)
291 3qil_A Clathrin heavy chain 1; 49.7 9.1 0.00031 27.9 2.1 71 80-158 16-86 (125)
292 4ets_A Ferric uptake regulatio 49.7 52 0.0018 25.7 6.8 73 15-88 13-87 (162)
293 2wvi_A Mitotic checkpoint seri 49.0 94 0.0032 24.3 10.0 53 484-537 77-130 (164)
294 2qx5_A Nucleoporin NIC96; mRNA 48.8 2.2E+02 0.0075 28.5 19.0 80 270-361 300-383 (661)
295 3jxi_A Vanilloid receptor-rela 48.3 30 0.001 29.4 6.0 51 111-161 12-71 (260)
296 4aez_C MAD3, mitotic spindle c 47.0 1.2E+02 0.0042 25.1 8.8 53 483-536 130-183 (223)
297 3l6a_A Eukaryotic translation 45.9 99 0.0034 28.2 8.9 23 543-565 143-165 (364)
298 4aez_C MAD3, mitotic spindle c 45.7 1.2E+02 0.0041 25.2 8.4 54 219-298 131-184 (223)
299 3t8k_A Uncharacterized protein 45.3 87 0.003 25.0 7.9 52 182-233 14-66 (186)
300 2d2s_A Exocyst complex compone 45.0 1.2E+02 0.0042 25.5 8.8 29 434-462 89-117 (235)
301 2fe3_A Peroxide operon regulat 44.0 53 0.0018 25.1 6.0 60 392-452 13-72 (145)
302 2wvi_A Mitotic checkpoint seri 43.7 1.2E+02 0.004 23.8 9.2 55 219-299 77-131 (164)
303 1k1a_A B-cell lymphoma 3-encod 42.5 1.4E+02 0.0049 24.5 10.7 84 271-359 13-101 (241)
304 3qil_A Clathrin heavy chain 1; 42.4 5.4 0.00019 29.0 0.1 72 9-93 16-87 (125)
305 2qx5_A Nucleoporin NIC96; mRNA 42.1 2.8E+02 0.0095 27.8 18.6 40 175-214 156-198 (661)
306 2xig_A Ferric uptake regulatio 41.8 71 0.0024 24.5 6.4 61 391-452 17-77 (150)
307 1wty_A Hypothetical protein TT 40.0 1.1E+02 0.0036 22.3 7.6 16 539-554 54-69 (119)
308 4a1g_A Mitotic checkpoint seri 39.3 1.3E+02 0.0044 23.2 9.9 54 219-298 82-135 (152)
309 3ltj_A Alpharep-4; protein eng 39.3 1.5E+02 0.005 23.7 20.4 18 464-481 118-135 (201)
310 4ets_A Ferric uptake regulatio 39.1 58 0.002 25.5 5.6 60 392-452 24-85 (162)
311 3jxi_A Vanilloid receptor-rela 39.0 1.2E+02 0.0039 25.7 8.2 182 375-564 11-248 (260)
312 3aji_A 26S proteasome non-ATPa 38.8 1.5E+02 0.005 24.3 8.7 88 3-97 7-97 (231)
313 3kea_A K1L; tropism, ANK repea 38.6 1.9E+02 0.0065 24.9 11.4 145 340-494 34-185 (285)
314 2zu6_B Programmed cell death p 38.2 2.1E+02 0.0072 25.2 15.1 25 338-362 7-31 (307)
315 3t8k_A Uncharacterized protein 38.0 1.5E+02 0.0052 23.5 8.6 24 377-400 46-69 (186)
316 3ltm_A Alpha-REP4; protein eng 37.7 1.6E+02 0.0055 23.7 19.9 92 399-495 93-184 (211)
317 1k1a_A B-cell lymphoma 3-encod 35.5 1.8E+02 0.0063 23.8 9.9 15 447-461 87-101 (241)
318 2xig_A Ferric uptake regulatio 35.4 88 0.003 24.0 6.0 58 493-552 18-75 (150)
319 3ygs_P Procaspase 9; apoptosis 34.6 43 0.0015 23.4 3.7 38 185-222 51-88 (97)
320 3eu9_A Huntingtin-interacting 33.5 78 0.0027 26.1 6.1 204 6-228 13-233 (240)
321 3d5l_A Regulatory protein RECX 33.3 1.8E+02 0.0063 24.1 8.0 79 485-565 128-207 (221)
322 2w57_A Ferric uptake regulatio 33.2 93 0.0032 23.9 5.8 58 493-552 8-66 (150)
323 3eyy_A Putative iron uptake re 33.0 79 0.0027 24.1 5.4 35 417-451 33-67 (145)
324 3b7b_A Euchromatic histone-lys 32.9 1.9E+02 0.0065 23.7 8.5 208 4-230 13-235 (237)
325 3ltj_A Alpharep-4; protein eng 32.8 1.9E+02 0.0064 23.1 18.0 28 365-393 151-178 (201)
326 2fu4_A Ferric uptake regulatio 32.4 1.1E+02 0.0037 20.2 7.1 60 391-451 7-67 (83)
327 2cos_A Serine/threonine protei 31.6 68 0.0023 19.3 3.5 38 523-566 11-50 (54)
328 3e3v_A Regulatory protein RECX 31.3 2E+02 0.0067 22.8 10.0 82 487-570 87-169 (177)
329 2fe3_A Peroxide operon regulat 31.2 1.4E+02 0.0047 22.7 6.5 13 484-496 38-50 (145)
330 3ljn_A Hypothetical protein; a 30.7 2.4E+02 0.0082 25.3 9.4 79 443-527 177-266 (364)
331 1mzb_A Ferric uptake regulatio 30.5 1.3E+02 0.0043 22.6 6.1 60 392-452 9-69 (136)
332 3i5p_A Nucleoporin NUP170; hel 30.1 3E+02 0.01 26.6 9.8 26 471-496 221-246 (525)
333 3hra_A Ankyrin repeat family p 29.6 2.1E+02 0.0071 22.6 8.6 85 5-95 8-94 (201)
334 2fv2_A RCD1 required for cell 29.1 1.1E+02 0.0037 26.1 5.7 53 476-528 182-235 (268)
335 1oyz_A Hypothetical protein YI 28.9 2.7E+02 0.0092 23.7 22.7 77 461-547 200-276 (280)
336 2rfa_A Transient receptor pote 28.8 1.4E+02 0.0048 24.5 6.9 155 2-167 3-182 (232)
337 2bn5_A PSI; nuclear protein, s 28.5 70 0.0024 16.8 3.0 25 543-567 7-31 (33)
338 2f6m_A Suppressor protein STP2 28.4 1.2E+02 0.004 19.3 5.0 46 37-83 4-49 (65)
339 1mzb_A Ferric uptake regulatio 27.6 1.9E+02 0.0065 21.5 6.9 59 356-415 8-67 (136)
340 2qq8_A TBC1 domain family memb 27.6 91 0.0031 28.0 5.7 45 285-329 214-258 (334)
341 3aji_A 26S proteasome non-ATPa 27.4 2.1E+02 0.0073 23.2 7.8 115 340-464 9-131 (231)
342 2w57_A Ferric uptake regulatio 27.4 2.1E+02 0.007 21.9 6.9 62 390-452 6-68 (150)
343 3eiq_C Programmed cell death p 27.2 3.5E+02 0.012 24.5 18.4 26 440-465 221-246 (358)
344 3eyy_A Putative iron uptake re 26.8 84 0.0029 23.9 4.6 12 519-530 34-45 (145)
345 2p1h_A APAF-1, apoptotic prote 26.5 1.6E+02 0.0054 20.2 6.1 38 184-221 49-86 (94)
346 2fu4_A Ferric uptake regulatio 26.4 1.4E+02 0.0048 19.6 7.5 61 288-349 6-67 (83)
347 2o03_A Probable zinc uptake re 26.1 98 0.0034 23.0 4.7 37 378-414 22-58 (131)
348 2b7e_A PRE-mRNA processing pro 25.9 64 0.0022 20.0 2.8 34 117-150 2-36 (59)
349 1bd8_A P19INK4D CDK4/6 inhibit 25.2 1.6E+02 0.0055 22.1 6.2 18 546-563 138-155 (156)
350 2keb_A DNA polymerase subunit 25.2 1.8E+02 0.006 20.3 5.7 58 385-442 28-88 (101)
351 2ijq_A Hypothetical protein; s 24.7 2.5E+02 0.0084 21.9 6.7 53 479-531 44-104 (161)
352 3mwm_A ZUR, putative metal upt 24.0 1.2E+02 0.0042 22.8 4.9 50 39-88 17-66 (139)
353 3qye_A TBC1 domain family memb 23.7 3.9E+02 0.013 23.7 11.1 76 285-360 209-288 (331)
354 2rfa_A Transient receptor pote 23.7 3E+02 0.01 22.4 9.2 51 512-564 161-220 (232)
355 2o03_A Probable zinc uptake re 23.7 1.5E+02 0.005 22.0 5.3 47 472-518 15-61 (131)
356 3eu9_A Huntingtin-interacting 23.6 3E+02 0.01 22.4 8.7 49 511-564 183-233 (240)
357 3bqo_A Telomeric repeat-bindin 23.2 57 0.002 26.3 2.9 24 74-97 121-144 (211)
358 3mwm_A ZUR, putative metal upt 22.5 79 0.0027 23.9 3.6 47 4-51 18-64 (139)
359 3b7b_A Euchromatic histone-lys 22.4 3.2E+02 0.011 22.3 9.3 17 513-529 218-234 (237)
360 1oai_A Nuclear RNA export fact 22.0 59 0.002 20.2 2.2 23 13-35 34-56 (59)
361 2dzn_A Probable 26S proteasome 21.7 3.2E+02 0.011 22.0 9.6 24 545-568 178-201 (228)
362 4gq2_M Nucleoporin NUP120; bet 21.7 5.7E+02 0.019 27.0 11.0 105 407-516 816-950 (950)
363 3txn_A 26S proteasome regulato 21.5 4.8E+02 0.016 24.0 28.4 126 173-326 21-166 (394)
364 1n11_A Ankyrin; clathrin, BAND 21.4 4.8E+02 0.016 24.0 11.9 51 42-96 18-70 (437)
365 1oyz_A Hypothetical protein YI 21.0 3.8E+02 0.013 22.7 24.5 127 433-570 139-267 (280)
366 3bqo_A Telomeric repeat-bindin 21.0 3.4E+02 0.011 22.0 7.2 45 187-231 94-146 (211)
367 1wgl_A TOLL-interacting protei 20.9 1.6E+02 0.0054 18.2 4.8 23 276-298 35-57 (59)
368 3ygs_P Procaspase 9; apoptosis 20.5 1.3E+02 0.0043 21.0 4.0 34 451-484 52-85 (97)
369 2r9g_A AAA ATPase, central reg 20.3 3.5E+02 0.012 22.0 8.8 89 270-359 17-113 (204)
370 2qq8_A TBC1 domain family memb 20.1 2E+02 0.0067 25.8 6.3 43 489-531 215-257 (334)
371 2etb_A Transient receptor pote 20.0 93 0.0032 26.2 4.1 20 46-65 10-29 (256)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-40 Score=333.76 Aligned_cols=474 Identities=8% Similarity=-0.016 Sum_probs=251.9
Q ss_pred cccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCC--CCCeeehhHHhhhhh
Q 043608 35 PSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMP--QRNVVSWTAMIAGCS 112 (579)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~ 112 (579)
...|+.++..+.+.|++++|..+|+++.+. .|+..++..++.+|.+.|++++|..+|+++. .++..+++.++.+|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 344444444444444444444444444432 2333444444444444444444444444442 234444444444444
Q ss_pred cCCChhhHHHHHHHHHHC---------------CCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHH
Q 043608 113 QNYQENDAIKLYIQMLQS---------------GVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNAL 177 (579)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~---------------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 177 (579)
+.|++++|.++|+++... |.+++..+|..++.+|.+.|++++|.++|+++.+.++ .+...+..+
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHH
Confidence 444444444444421111 1112234444555555555555555555555544331 122233333
Q ss_pred HHHHhcCCCHHHHHH--H-hcccCCC----cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH
Q 043608 178 IAMYTKFDRILDARN--V-FSGIARK----DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSN 250 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~--~-~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~ 250 (579)
...+...+..+.+.. + +..+... ....|+.++..|.+.|++++|.++|+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------------------- 301 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL------------------- 301 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-------------------
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-------------------
Confidence 333322222111110 0 1111111 1223333444444555555555555444332
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCC
Q 043608 251 FARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGF 330 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 330 (579)
+++..+|+.++..+.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+..
T Consensus 302 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 302 ----------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp ----------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred ----------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 2444445555555555555555555555554432 2234444455555555555555555555554332
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
+.+..++..++.+|.+.|++++|.++|+++ . .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 334555566666666666666666666654 1 12245566777777777777777777777766653 33556666677
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC--------CCC--hhhHHHHHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME--------NPD--VVSWSSLILGYA 478 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~--~~~~~~l~~~~~ 478 (579)
.+|.+.|++++|.++++.+.+... .++.+++.++.+|.+.|++++|.++|+++. .|+ ..+|..++.+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 777777777777777777665542 256667777777777777777777776663 244 557777788888
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHH
Q 043608 479 QFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLL 548 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 548 (579)
+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+. .|+ ...+..+..+|
T Consensus 528 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI---SPNEIMASDLLKRAL 594 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHH
Confidence 8888888888888877754 336677788888888888888888888887754 343 44555555544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-39 Score=330.27 Aligned_cols=482 Identities=10% Similarity=-0.032 Sum_probs=394.0
Q ss_pred HHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHH
Q 043608 80 YGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLH 159 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 159 (579)
+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|..+|+++.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667788888888888888999999999999999999999999999985 4688899999999999999999999999
Q ss_pred HHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-------------------cHhhHHHHHHHHHhcCChHH
Q 043608 160 AHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-------------------DVTSWGSMIAAFSKLGYELE 220 (579)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~ 220 (579)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988653 678899999999999999999999999964433 47899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCChHh-HHHHHHHHH---HH----H-----HHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 043608 221 ALCHFNEMLHHGAYQPNEFI-FGSVFSACS---NF----A-----RILFNEIDSPDLASWNALIAGVASHSNANEAMSLF 287 (579)
Q Consensus 221 a~~~~~~m~~~~~~~p~~~~-~~~~l~~~~---~~----~-----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 287 (579)
|.+.|++|.+.+ |+... +..+..... .. . .........+....|+.++..|.+.|++++|.++|
T Consensus 219 A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 219 AKECYKEALMVD---AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999999874 33322 222211100 00 0 01111111233445667788899999999999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCC
Q 043608 288 SEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNAD 365 (579)
Q Consensus 288 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~ 365 (579)
+++.+. +++..++..++..+.+.|++++|..+++.+.+.+. .+..++..++.++.+.|++++|.++++.+ ..+.+
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 372 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc
Confidence 999875 68899999999999999999999999999998873 47889999999999999999999999987 23347
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
..+|+.++..|.+.|++++|.++|+++.+.. +.+..++..++..+.+.|++++|.++++++.+.+ +.+..++..++.+
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 8899999999999999999999999998853 4467899999999999999999999999999765 3478899999999
Q ss_pred HHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC----CCCCC--hhHHHHHHHHhhccC
Q 043608 446 YIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL----GVSPN--LVTLVGVLTACSHVG 516 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g 516 (579)
|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999863 56889999999999999999999999999876 66787 679999999999999
Q ss_pred chHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC-hhHhhh
Q 043608 517 LVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD-IVVWKS 575 (579)
Q Consensus 517 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~ 575 (579)
++++|.+.++++.+. + +.+..+|..+..+|.+.|++++|.++++++ ...|+ ...|..
T Consensus 531 ~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 531 MYDAAIDALNQGLLL-S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp CHHHHHHHHHHHHHH-S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 999999999999875 3 446789999999999999999999999999 44565 444443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.4e-29 Score=243.56 Aligned_cols=185 Identities=12% Similarity=0.126 Sum_probs=177.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc---------hhhHHHHHHHHHHcCCCCCch
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT---------LYQGMQVHSYIIKMGFDSNVP 335 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 335 (579)
..++.+|++|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788999999999999999999999999999999999999999986554 678999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHh
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACA 412 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 412 (579)
+|+++|.+|++.|++++|.++|++| +..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999998 7889999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc
Q 043608 413 KMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC 449 (579)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (579)
+.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.2e-28 Score=239.65 Aligned_cols=185 Identities=12% Similarity=0.148 Sum_probs=177.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCC---
Q 043608 203 TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSN--- 279 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 279 (579)
..++.+|.+|++.|++++|+++|++|.+.|+ +||..+||+||.+|++.+.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv---------------------------~pd~~tyn~Li~~c~~~~~~~~ 79 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGV---------------------------QLSQYHYNVLLYVCSLAEAATE 79 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC---------------------------CCCHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------------------------CCCHhHHHHHHHHHHhCCchhh
Confidence 4578889999999999999999999999999 9999999999999987664
Q ss_pred ------hHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHH
Q 043608 280 ------ANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNA 353 (579)
Q Consensus 280 ------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (579)
++.|.++|++|...|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc
Q 043608 354 LLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414 (579)
Q Consensus 354 ~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 414 (579)
.++|++| +..||..+|+++|.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999998 888999999999999999999999999999999999999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.6e-25 Score=214.98 Aligned_cols=374 Identities=10% Similarity=0.030 Sum_probs=232.0
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccC
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCG 84 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (579)
+...+.+.|++++|++.++.+.+. .|.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677888888888888888775 34455566667777788888888888888888765 667778888888888888
Q ss_pred ChhhHHHhhcCCC--CC-CeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCc-ccHHHHHHHhcCCCcchhHHHHHH
Q 043608 85 SLEDARMGFDKMP--QR-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQ-FTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 85 ~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
++++|++.|+++. .| +..+|..+...+.+.|++++|.+.|+++.+. .|+. ..+..+...+...|++++|.+.++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888775 24 3446778888888888888888888888775 3443 345556666777777888877777
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPN 237 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 237 (579)
++.+.. +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...+++..+..
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 233 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS----- 233 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Confidence 777653 23345555666666666666666666655432 134455555555555666666666655555442
Q ss_pred hHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhh
Q 043608 238 EFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQ 317 (579)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 317 (579)
+.+..++..+...+.+.|++++|.+.|+++.+. .|
T Consensus 234 -----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p-------------------- 268 (388)
T 1w3b_A 234 -----------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QP-------------------- 268 (388)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CS--------------------
T ss_pred -----------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC--------------------
Confidence 233455555555555556666666655555543 22
Q ss_pred HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043608 318 GMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS 395 (579)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 395 (579)
.++.++..+...+.+.|++++|.+.|+++ ..+.+..+++.+...+...|++++|...++++.+.
T Consensus 269 --------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 269 --------------HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp --------------SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred --------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12334444555555555555555555443 12224455555566666666666666666665543
Q ss_pred CCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcC
Q 043608 396 QIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCG 450 (579)
Q Consensus 396 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 450 (579)
.+.+..++..+...+.+.|++++|...++++.+... .+...+..+...+...|
T Consensus 335 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 335 -FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 123345555666666666666666666666654321 23455555555555444
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.7e-25 Score=210.68 Aligned_cols=373 Identities=12% Similarity=0.073 Sum_probs=196.1
Q ss_pred hhhhcCCChhhHHHHHHHHHHCCCCCC-cccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCH
Q 043608 109 AGCSQNYQENDAIKLYIQMLQSGVMPG-QFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRI 187 (579)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 187 (579)
..+.+.|++++|.+.++++.+. .|+ ...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3455667777777777776654 333 3344444555566667777766666665543 33455566666666666666
Q ss_pred HHHHHHhcccCC--C-cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 188 LDARNVFSGIAR--K-DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 188 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+.. +.+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~ 135 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----------------------------PDLY 135 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----------------------------TTCT
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcH
Confidence 666666655432 2 34456666666666666666666666666543 2334
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHH
Q 043608 265 ASWNALIAGVASHSNANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTM 343 (579)
Q Consensus 265 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (579)
..+..+...+...|++++|.+.|+++.+. .| +..++..+...+...|++++|...++.+.+.+ +.+...+..+...
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 44555556666666666666666666553 23 23445555555555556666665555555543 2233444445555
Q ss_pred HHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHH
Q 043608 344 YAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVT 421 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 421 (579)
+...|++++|...+++. ...| +..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555443 1111 33444555555555555555555555554432 112334444444444444444444
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 422 QLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+.++++.+.. + ++..+|..+...+.+.|++++|.+.++++.+.. +.+
T Consensus 292 ~~~~~al~~~-p-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 338 (388)
T 1w3b_A 292 DCYNTALRLC-P-------------------------------THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEF 338 (388)
T ss_dssp HHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTC
T ss_pred HHHHHHHhhC-c-------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCc
Confidence 4444444332 2 234445555555555555555555555555431 223
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcC
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAG 552 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 552 (579)
..++..+..++.+.|++++|...++++.+ ..|+ ...+..+...+...|
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHhHHHHHHHcc
Confidence 44555555555555555555555555553 2332 334445555554443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.5e-22 Score=198.88 Aligned_cols=447 Identities=11% Similarity=-0.010 Sum_probs=275.0
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccC
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCG 84 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (579)
.-..+.+.|++++|+..|+++... .|++.++..+..++...|++++|...++.+++.+ +.+...+..+..++.+.|
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence 334566667777777777766665 1456666666666667777777777777766655 445566666666666666
Q ss_pred ChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHH
Q 043608 85 SLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAH 161 (579)
Q Consensus 85 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 161 (579)
++++|...|+++.+ ++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------- 152 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK--------------- 152 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------------
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH---------------
Confidence 66666666665542 122222223322222222222222222222221111111111100000
Q ss_pred HHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCC-cHhhHHHHHHHHHh---cCChHHHHHHHHHHHh-----cC
Q 043608 162 VIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARK-DVTSWGSMIAAFSK---LGYELEALCHFNEMLH-----HG 232 (579)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~ 232 (579)
......|+.......+..+...... ..+..+ +...+......+.. .|++++|...|+++.+ ..
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 153 -DKQENLPSVTSMASFFGIFKPELTF-------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCC-------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred -hhccCCchhHHHHHHHhhcCHHHHH-------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 0001112211111111111110000 111112 33444444444443 7888888888888877 32
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcc
Q 043608 233 AYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGR 312 (579)
Q Consensus 233 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (579)
. .|+..... +.+...+..+...+...|++++|...++.+.+.. |+...+..+...+...
T Consensus 225 ~-~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 225 K-NNEDEKLK------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADR 283 (514)
T ss_dssp T-STTCHHHH------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTS
T ss_pred c-CccccccC------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHC
Confidence 1 22211000 2345567777888888888888888888887753 3466777777888888
Q ss_pred cchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043608 313 LTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFS 390 (579)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 390 (579)
|++++|...++.+.+.. +.+..++..+...+...|++++|...++.. ..+.+...+..+...+...|++++|...++
T Consensus 284 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888765 335677888888888899999999888876 222356678888888889999999999999
Q ss_pred HHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----hhHHHHHHHHHHH---cCCHHHHHHHHhhC
Q 043608 391 RMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA-FD----VFVMNGLMDIYIK---CGSLGSARKLFNFM 462 (579)
Q Consensus 391 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 462 (579)
++.+.. +.+...+..+...+...|++++|...++.+.+.... ++ ...+..+..++.. .|++++|...++.+
T Consensus 363 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 887763 335667888888889999999999999888754322 12 3378888889999 99999999999887
Q ss_pred CC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh
Q 043608 463 EN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV 503 (579)
Q Consensus 463 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 503 (579)
.+ .+...+..+...|.+.|++++|...+++..+. .|+..
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 63 45677888899999999999999999999985 45543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.8e-21 Score=192.12 Aligned_cols=421 Identities=10% Similarity=-0.010 Sum_probs=300.7
Q ss_pred eehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHH
Q 043608 102 VSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMY 181 (579)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (579)
..|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|.+.++++.+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345666777888999999999999998864 788888889999999999999999999988875 34567788888888
Q ss_pred hcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH--------
Q 043608 182 TKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSN-------- 250 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~-------- 250 (579)
...|++++|...|+++... +......++..+........+.+.+..+...+. .|+.............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA-TPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCChhhHHHhhccCCchhH
Confidence 8888888888888776432 333444445544444444444444433322211 1111000000000000
Q ss_pred HHHHHhhcCC----------CCChhhHHHHHHHHHc---CCChHHHHHHHHHHHh-----CCCCC--------ChHHHHH
Q 043608 251 FARILFNEID----------SPDLASWNALIAGVAS---HSNANEAMSLFSEMRD-----RELLP--------DGLTVHS 304 (579)
Q Consensus 251 ~~~~~~~~~~----------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~~p--------~~~~~~~ 304 (579)
.....+.... +.+...+......+.. .|++++|...|+++.. ....| +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 0000000000 1113344444444444 8999999999999887 32122 3446667
Q ss_pred HHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CC-CCChhhHHHHHHHHHhcCCH
Q 043608 305 LLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GK-NADSVSWNSIIAACLQHNQA 382 (579)
Q Consensus 305 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~ 382 (579)
+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++.. .. +.+...+..+...+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 778888999999999999999888644 788888899999999999999999886 22 33667888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFM 462 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 462 (579)
++|...+++..+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+.+.|++++|...++.+
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998864 33566788888899999999999999999887643 35678888899999999999999999887
Q ss_pred CC--CC-------hhhHHHHHHHHHh---cCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 463 EN--PD-------VVSWSSLILGYAQ---FGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 463 ~~--~~-------~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+ |+ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 63 22 2378888889999 999999999999988753 33566888889999999999999999999886
Q ss_pred h
Q 043608 531 E 531 (579)
Q Consensus 531 ~ 531 (579)
.
T Consensus 478 ~ 478 (514)
T 2gw1_A 478 L 478 (514)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=6.5e-21 Score=191.57 Aligned_cols=429 Identities=10% Similarity=-0.027 Sum_probs=263.1
Q ss_pred cccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhh
Q 043608 35 PSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGC 111 (579)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 111 (579)
...+..+...+.+.|++++|...|+++++.. +.++..+..+..+|.+.|++++|++.|+++.+ .+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3466677777888888888888888888776 56777888888888888888888888877652 3456677777788
Q ss_pred hcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc--CCChhHHHHHHHHHhcCCCHHH
Q 043608 112 SQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH--GSHLIAQNALIAMYTKFDRILD 189 (579)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 189 (579)
...|++++|...|+.+.. .|+.. ...+..+...+....|...++.+..... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 888888888888863322 22211 1122333334445667777777755321 1111112234445666777788
Q ss_pred HHHHhcccCCCcHh---hHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCCCChH-hHHHHHHHHHHHHHHHhh
Q 043608 190 ARNVFSGIARKDVT---SWGSMIAAFSK--------LGYELEALCHFNEMLHHGAYQPNEF-IFGSVFSACSNFARILFN 257 (579)
Q Consensus 190 a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~ 257 (579)
+...+......+.. ....+...+.. .|++++|..+++++.+... +.. .+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p---~~~~~~~~-------------- 241 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT---VDDPLREN-------------- 241 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C---CCHHHHHH--------------
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC---CcchhhHH--------------
Confidence 88777776654332 33333333222 2578999999999987641 110 0000
Q ss_pred cCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhH
Q 043608 258 EIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVC 337 (579)
Q Consensus 258 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (579)
-..++..+...+...|++++|...++..... .|+...+..+...+...|+++.|...++.+.+.. +.+..++
T Consensus 242 -----~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 313 (537)
T 3fp2_A 242 -----AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTY 313 (537)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -----HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHH
Confidence 0234666777888899999999999999875 5667777788888888899999999998888775 3356667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC
Q 043608 338 NAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA 415 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 415 (579)
..+...+...|++++|...|+.. ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 77777777777777777777765 112245566777777777777777777777776652 333456666666666777
Q ss_pred ChHHHHHHHHHHHHcCCC-----CchhHHHHHHHHHHHc----------CCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 043608 416 SLEMVTQLHCYITKTGLA-----FDVFVMNGLMDIYIKC----------GSLGSARKLFNFMEN---PDVVSWSSLILGY 477 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 477 (579)
++++|...++.+.+.... .....+..+..++... |++++|...++++.+ .+...+..+...|
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777666533211 1111122333344444 555555555554431 2334444555555
Q ss_pred HhcCCcHHHHHHHHHHHh
Q 043608 478 AQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~ 495 (579)
.+.|++++|.+.|++..+
T Consensus 473 ~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 555555555555555554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.1e-20 Score=185.35 Aligned_cols=325 Identities=14% Similarity=0.066 Sum_probs=233.4
Q ss_pred ChhHHHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 043608 170 HLIAQNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFS 246 (579)
Q Consensus 170 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~ 246 (579)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++|.+.|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 445566666667777777777777766543 356677777777778888888888888777764
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh----HHHHHH------------HHHhh
Q 043608 247 ACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDG----LTVHSL------------LCACI 310 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l------------l~~~~ 310 (579)
+.+...+..+...+.+.|++++|.+.|+++.+. .|+. ..+..+ ...+.
T Consensus 91 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 91 --------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777888888888888888877764 3433 333333 33467
Q ss_pred cccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 311 GRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
..|++++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+.+ ..+.+..++..+...+...|++++|...
T Consensus 155 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888888888888765 346777888888888899999998888876 2223677888888889999999999999
Q ss_pred HHHHHHCCCCCc-HhHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHHcCCH
Q 043608 389 FSRMLASQIKPD-HITFNDV------------MGACAKMASLEMVTQLHCYITKTGLAFD---VFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 389 ~~~m~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 452 (579)
|+++... .|+ ...+..+ ...+...|++++|...++.+.+...... ...+..+..++.+.|++
T Consensus 234 ~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 234 VRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 9988765 343 3333333 6778888999999999988887543211 34677888888899999
Q ss_pred HHHHHHHhhCC--CC-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHH------------HhhccC
Q 043608 453 GSARKLFNFME--NP-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLT------------ACSHVG 516 (579)
Q Consensus 453 ~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~------------~~~~~g 516 (579)
++|...++++. .| +...|..+..+|...|++++|...++++.+. .|+ ...+..+.. .|...|
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 99998888875 34 5778888888899999999999999998874 454 445555552 233344
Q ss_pred -----chHHHHHHHHHHH
Q 043608 517 -----LVEEGLHLYRIME 529 (579)
Q Consensus 517 -----~~~~a~~~~~~~~ 529 (579)
+.+++.+.++++.
T Consensus 390 ~~~~~~~~~~~~~y~~~~ 407 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLA 407 (450)
T ss_dssp SSTTCCTTHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHH
Confidence 5566677777643
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.8e-20 Score=183.72 Aligned_cols=334 Identities=10% Similarity=0.032 Sum_probs=273.2
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
++..+..+...+.+.|++++|.++|+++.+.. +.+...|..+..++...|++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~l~~~~~~~g~~ 76 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD----------------------------PDNYIAYYRRATVFLAMGKS 76 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------CccHHHHHHHHHHHHHCCCH
Confidence 56789999999999999999999999998774 56788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc---hhHHHH------------HHHHH
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV---PVCNAI------------LTMYA 345 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~ 345 (579)
++|...|+++.+.+ +.+...+..+...+...|++++|...++.+.+... .+. ..+..+ ...+.
T Consensus 77 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 77 KAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998863 33567788888999999999999999999998652 233 455444 44488
Q ss_pred hcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHH
Q 043608 346 KCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQL 423 (579)
Q Consensus 346 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 423 (579)
..|++++|...|+.+ ..+.+...+..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999987 223377889999999999999999999999998763 45678899999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHH------------HHHHHHcCCHHHHHHHHhhCCC--CC-----hhhHHHHHHHHHhcCCcH
Q 043608 424 HCYITKTGLAFDVFVMNGL------------MDIYIKCGSLGSARKLFNFMEN--PD-----VVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~ 484 (579)
++.+.+.... +...+..+ ...+.+.|++++|...|+++.+ |+ ...|..+...+.+.|+++
T Consensus 234 ~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 234 VRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 9999876432 34444444 7889999999999999999863 55 347888899999999999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHH------------HHHHhc
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVV------------DLLARA 551 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~------------~~~~~~ 551 (579)
+|+..++++.+.. +.+...|..+..+|...|++++|...++++.+ ..|+ ...+..+. ..|...
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE---HNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 9999999998753 33678999999999999999999999999985 4565 34555555 234444
Q ss_pred C-----ChhHHHHHHHhh--cCCCCh
Q 043608 552 G-----CVHEAEDFINQM--ACDADI 570 (579)
Q Consensus 552 g-----~~~~A~~~~~~~--~~~~~~ 570 (579)
| +.+++.+.++++ ..+||.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 5 667788888874 455653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=3e-20 Score=186.69 Aligned_cols=418 Identities=11% Similarity=0.017 Sum_probs=253.8
Q ss_pred hhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc
Q 043608 104 WTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK 183 (579)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (579)
|..+...+.+.|++++|...|+++.... +.+..++..+..++...|++++|.+.++++.+.. +.+...+..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 3444444444555555555555544432 2233444444445555555555555555554443 2234444455555555
Q ss_pred CCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCChHhHHHHHHHHHHH-HHHHhh
Q 043608 184 FDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHG-----AYQPNEFIFGSVFSACSNF-ARILFN 257 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~~~~~l~~~~~~-~~~~~~ 257 (579)
.|++++|...|+.+ ..+.......+..+...+...+|...++++.... ...|+.......+...... ....+.
T Consensus 106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 55555555555422 1111112222333333444455555555553320 0012222222211111000 111111
Q ss_pred cCCCCChh---hHHHHHHHHHcC--------CChHHHHHHHHHHHhCCCCCCh--------HHHHHHHHHhhcccchhhH
Q 043608 258 EIDSPDLA---SWNALIAGVASH--------SNANEAMSLFSEMRDRELLPDG--------LTVHSLLCACIGRLTLYQG 318 (579)
Q Consensus 258 ~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~--------~~~~~ll~~~~~~~~~~~a 318 (579)
.....+.. ....+...+... |++++|..+++++.+. .|+. ..+..+...+...|++++|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 11111111 222333332222 4788899999888865 4442 2355555677788999999
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043608 319 MQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQ 396 (579)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 396 (579)
...++.+.+.. |+...+..+...+...|++++|.+.++.. ..+.+..++..+...+...|++++|...+++..+..
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999998875 34778888888899999999999999876 222357788888899999999999999999988763
Q ss_pred CCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----C----Ch
Q 043608 397 IKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----P----DV 467 (579)
Q Consensus 397 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~ 467 (579)
+.+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+ + ..
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 3345678888888899999999999999888765 33567888888999999999999999888763 1 11
Q ss_pred hhHHHHHHHHHhc----------CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 468 VSWSSLILGYAQF----------GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 468 ~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..+..+...+... |++++|...++++.+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2234445667777 89999999999988753 335678888889999999999999999998864
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=3.9e-17 Score=154.75 Aligned_cols=309 Identities=6% Similarity=-0.051 Sum_probs=152.6
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChH
Q 043608 202 VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNAN 281 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 281 (579)
+..+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD----------------------------PDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------cccHHHHHHHHHHHHHccCHH
Confidence 3455566666677777777777777766653 345566666667777777777
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCC--CCchhHHHH------------HHHHHhc
Q 043608 282 EAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD--SNVPVCNAI------------LTMYAKC 347 (579)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~ 347 (579)
+|...++++.+.. +.+...+..+...+...|++++|...++.+.+.... .+...+..+ ...+...
T Consensus 55 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 55 AALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777777666542 123345555555566666666666666666554320 122222222 2344445
Q ss_pred CChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 348 SVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 348 ~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
|++++|.+.++.+ ..+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555443 111133444444555555555555555555544432 2233444444444445555555555554
Q ss_pred HHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-h--
Q 043608 426 YITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-L-- 502 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-- 502 (579)
...+.... +...+..+...- .......+...+.+.|++++|...++++.+.. |+ .
T Consensus 213 ~a~~~~~~-~~~~~~~~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 270 (359)
T 3ieg_A 213 ECLKLDQD-HKRCFAHYKQVK-------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEY 270 (359)
T ss_dssp HHHHHCTT-CHHHHHHHHHHH-------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHH
T ss_pred HHHhhCcc-chHHHHHHHHHH-------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHH
Confidence 44433211 111111000000 00001112344555566666666666555532 22 1
Q ss_pred --hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 503 --VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 503 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+..+..++...|++++|...+++..+. .+.+...+..+..+|.+.|++++|.+.+++.
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12333455555566666666666655543 1223445555556666666666666666555
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=5e-17 Score=153.97 Aligned_cols=280 Identities=11% Similarity=0.037 Sum_probs=179.9
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHH
Q 043608 264 LASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTM 343 (579)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (579)
+..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3455666777777788888888887776642 2234455555555666666666666666665553 2233445555555
Q ss_pred HHhcCChHHHHHHHHHc-CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChH
Q 043608 344 YAKCSVLCNALLVFKEL-GKNA----DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLE 418 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 418 (579)
+...|++++|...|+.. ...| +...+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 55555555555555544 2222 1111111110000 001122245667778888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 419 MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 419 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
+|.+.++.+.+... .+...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888887776543 3567777788888888888888888887653 4567788888888889999999999998887
Q ss_pred CCCCCC-hhHHH------------HHHHHhhccCchHHHHHHHHHHHHhhCCCCCc-----chhHHHHHHHHhcCChhHH
Q 043608 496 LGVSPN-LVTLV------------GVLTACSHVGLVEEGLHLYRIMENEYGIIPTR-----EHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 496 ~~~~p~-~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A 557 (579)
. .|+ ...+. .+...+...|++++|...++++.+. .|+. ..+..+..++.+.|++++|
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 5 343 33332 2366789999999999999999875 3443 2355688999999999999
Q ss_pred HHHHHhh-cCCCC-hhHhh
Q 043608 558 EDFINQM-ACDAD-IVVWK 574 (579)
Q Consensus 558 ~~~~~~~-~~~~~-~~~~~ 574 (579)
.+.+++. ...|+ ..+|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCcccHHHHH
Confidence 9999988 33453 44443
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1.5e-14 Score=149.72 Aligned_cols=477 Identities=11% Similarity=0.032 Sum_probs=323.7
Q ss_pred HHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCC----------CCCee------
Q 043608 39 AGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMP----------QRNVV------ 102 (579)
Q Consensus 39 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~------ 102 (579)
..|+..+-+++++.--...++.-...| ..++.++|+|+..|...++-.+..-.=+... ++|+.
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay 921 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAY 921 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHh
Confidence 345555555566666666677777777 7788999999999987654433211111110 11211
Q ss_pred -----------------ehhHHhhhhhcCCChhhHHHHH-----------HHHHHCCC--CCCcccHHHHHHHhcCCCcc
Q 043608 103 -----------------SWTAMIAGCSQNYQENDAIKLY-----------IQMLQSGV--MPGQFTFGSIIKACSGLGSV 152 (579)
Q Consensus 103 -----------------~~~~l~~~~~~~~~~~~a~~~~-----------~~~~~~g~--~p~~~~~~~li~~~~~~~~~ 152 (579)
.|-...+-+.+..+.+-=-.++ +.-....+ .-++.-.....++|...|.+
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp 1001 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLP 1001 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCH
Confidence 1222222222333322211111 11111111 12333446677888899999
Q ss_pred hhHHHHHHHHHHhcc--CCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043608 153 CLGRQLHAHVIKSEH--GSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLH 230 (579)
Q Consensus 153 ~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 230 (579)
.+|++++++....+- ..+...-+.++.+..+. +..+..+..++...-+ ...+...+...|.+++|..+|++..
T Consensus 1002 ~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~- 1076 (1630)
T 1xi4_A 1002 NELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD- 1076 (1630)
T ss_pred HHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-
Confidence 999999998884321 13345556666666666 4455555555554323 3446778888999999999998852
Q ss_pred cCCCCCChHhHHHHHHHHHHH--HHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 043608 231 HGAYQPNEFIFGSVFSACSNF--ARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCA 308 (579)
Q Consensus 231 ~~~~~p~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (579)
-.......++....+. |..+.++. .+..+|..+..++...|++++|.+.|.+. -|...|..++.+
T Consensus 1077 -----~~~~A~~VLie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~ 1143 (1630)
T 1xi4_A 1077 -----VNTSAVQVLIEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQA 1143 (1630)
T ss_pred -----CHHHHHHHHHHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHH
Confidence 1122223333332222 44445544 44677889999999999999999999663 467788889999
Q ss_pred hhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043608 309 CIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRL 388 (579)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 388 (579)
|.+.|+++++.+++...++.. +++.+.+.++.+|++.+++++..... ..++...|..+...|...|++++|...
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----hCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999988875 34444556999999999988644443 344667778899999999999999999
Q ss_pred HHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh
Q 043608 389 FSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVV 468 (579)
Q Consensus 389 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 468 (579)
|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..+|...|++..|...... ...+..
T Consensus 1218 Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~d 1281 (1630)
T 1xi4_A 1218 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD 1281 (1630)
T ss_pred HHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHH
Confidence 9984 47899999999999999999999876 3668899999999999999999998775 445566
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc--cCchHHHHHHHHHHHHhhCCCC------Ccch
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH--VGLVEEGLHLYRIMENEYGIIP------TREH 540 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~------~~~~ 540 (579)
.+..++..|.+.|.+++|+.+++...... +-....|.-+...+++ -++..++.++|. ++.+++| +...
T Consensus 1282 eLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~---~rini~k~~r~~e~~~l 1357 (1630)
T 1xi4_A 1282 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHL 1357 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH---HhcccchHhHHHHHHHH
Confidence 67789999999999999999998887543 2233355555555554 344444444444 4434444 4667
Q ss_pred hHHHHHHHHhcCChhHHHHH
Q 043608 541 CSCVVDLLARAGCVHEAEDF 560 (579)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~ 560 (579)
|..++-.|.+.|+++.|...
T Consensus 1358 W~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1358 WAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999843
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=5.6e-15 Score=152.74 Aligned_cols=377 Identities=11% Similarity=0.078 Sum_probs=211.3
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCC--CCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcC
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKC--QPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQN 114 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (579)
--....++|...|.+.+|.++++.+.-.+- ..+....+.++....+. +..+..+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 334455666677777777777777663220 12334444455444443 3344333333333211 33355556667
Q ss_pred CChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHh
Q 043608 115 YQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVF 194 (579)
Q Consensus 115 ~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 194 (579)
|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++...|++++|.+.|
T Consensus 1063 glyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 777777777776421 1111122221 456677776666643 34566777777777777777777777
Q ss_pred cccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 043608 195 SGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGV 274 (579)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 274 (579)
.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-----------------------------~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-----------------------------RESYVETELIFAL 1177 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-----------------------------ccccccHHHHHHH
Confidence 553 456666667777777777777777776655542 2222222366666
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH
Q 043608 275 ASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNAL 354 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (579)
.+.+++++...+. . .|+...+..+...|...|++++|..+|... ..|..+...+.+.|+++.|.
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 6666666433332 1 334445555666666666666666666653 25666666666666666666
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 043608 355 LVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAF 434 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 434 (579)
+.+++.. +..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|..+++...... +-
T Consensus 1242 EaarKA~---n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-ra 1312 (1630)
T 1xi4_A 1242 DGARKAN---STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RA 1312 (1630)
T ss_pred HHHHHhC---CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hh
Confidence 6666552 456666666666666666666554432 22344445566666666677777766665555333 23
Q ss_pred chhHHHHHHHHHHHc--CCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhcCCcHHHH
Q 043608 435 DVFVMNGLMDIYIKC--GSLGSARKLFNFMEN--------PDVVSWSSLILGYAQFGCGDEAL 487 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~ 487 (579)
....|..|...|++. +++-++.+.|..-.. -+...|.-++..|.+.|+++.|.
T Consensus 1313 H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1313 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 344555555555543 234444444443222 23445666666666777776666
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=9.2e-16 Score=151.53 Aligned_cols=335 Identities=10% Similarity=-0.019 Sum_probs=220.7
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc----CCCHHHHHHHhcccCCC-cHhhHHHHHHHHHh----cCChH
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK----FDRILDARNVFSGIARK-DVTSWGSMIAAFSK----LGYEL 219 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 219 (579)
.+++++|..++++..+.| +...+..|...|.. .+++++|.+.|++..+. +...+..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 455555555555555442 33444445555555 55666666666554332 44555556666665 56777
Q ss_pred HHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCC
Q 043608 220 EALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS----HSNANEAMSLFSEMRDREL 295 (579)
Q Consensus 220 ~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 295 (579)
+|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.|
T Consensus 133 ~A~~~~~~a~~~~------------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~- 181 (490)
T 2xm6_A 133 ESVKWFRLAAEQG------------------------------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG- 181 (490)
T ss_dssp HHHHHHHHHHHTT------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCC------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 7777777766543 23444555555554 567777777777776654
Q ss_pred CCChHHHHHHHHHhhc----ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCChHHHHHHHHHcCCCCChh
Q 043608 296 LPDGLTVHSLLCACIG----RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK----CSVLCNALLVFKELGKNADSV 367 (579)
Q Consensus 296 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 367 (579)
+...+..+...+.. .++.++|...++...+.+ ++..+..+...|.. .+++++|.+.|+..-...+..
T Consensus 182 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 256 (490)
T 2xm6_A 182 --NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI 256 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH
T ss_pred --CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 44455555555554 677777777777777665 44556666666665 677888888887764334566
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc-----CChHHHHHHHHHHHHcCCCCchhH
Q 043608 368 SWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM-----ASLEMVTQLHCYITKTGLAFDVFV 438 (579)
Q Consensus 368 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~ 438 (579)
.+..+...|.. .++.++|..+|++..+.| +...+..+...+... +++++|...+++..+.+ +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 66667777776 778888888888877654 334555555666555 78888888888877765 4456
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 439 MNGLMDIYIKCG---SLGSARKLFNFMEN-PDVVSWSSLILGYAQ----FGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 439 ~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
+..+...|...| +.++|.+.|++..+ .+...+..+...|.. .+++++|.+.|++..+.| +...+..+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666777776655 67788888877653 566777777788877 788888888888888765 4566777777
Q ss_pred Hhhc----cCchHHHHHHHHHHHHh
Q 043608 511 ACSH----VGLVEEGLHLYRIMENE 531 (579)
Q Consensus 511 ~~~~----~g~~~~a~~~~~~~~~~ 531 (579)
.|.. .+++++|...|++..+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 7776 78888888888888875
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=2e-15 Score=149.19 Aligned_cols=392 Identities=11% Similarity=-0.030 Sum_probs=246.1
Q ss_pred hhhHHHHHHHhCCCCChhHHHHHHHHHHc----cCChhhHHHhhcCCCC-CCeeehhHHhhhhhc----CCChhhHHHHH
Q 043608 54 GRKVHDHILLSKCQPDVVLQNHILNMYGK----CGSLEDARMGFDKMPQ-RNVVSWTAMIAGCSQ----NYQENDAIKLY 124 (579)
Q Consensus 54 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 124 (579)
+...+....+ ..++..+..+...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|.+.|
T Consensus 26 ~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 3444444443 3355566666666655 4555555555554432 233444444444444 45555555555
Q ss_pred HHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhc----CCCHHHHHHHhcccCCC
Q 043608 125 IQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTK----FDRILDARNVFSGIARK 200 (579)
Q Consensus 125 ~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 200 (579)
++..+.| +...+. .|...|.. .+++++|...|++..+.
T Consensus 103 ~~a~~~~---~~~a~~-----------------------------------~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 103 KKAALKG---LPQAQQ-----------------------------------NLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHTT---CHHHHH-----------------------------------HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHCC---CHHHHH-----------------------------------HHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5554433 223333 33344443 44555555555443332
Q ss_pred -cHhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 043608 201 -DVTSWGSMIAAFSK----LGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVA 275 (579)
Q Consensus 201 -~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 275 (579)
+..++..+...|.. .++.++|.+.|++..+.| +...+..+...|.
T Consensus 145 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~------------------------------~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 145 GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG------------------------------NVWSCNQLGYMYS 194 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------------------------------CHHHHHHHHHHHh
Confidence 34455555555555 566777777777666543 3445555555665
Q ss_pred c----CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc----ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh-
Q 043608 276 S----HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG----RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK- 346 (579)
Q Consensus 276 ~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 346 (579)
. .++.++|.+.|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 5 677777777777776654 33444444444443 667777777777777654 34555666666666
Q ss_pred ---cCChHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC---
Q 043608 347 ---CSVLCNALLVFKELGKNADSVSWNSIIAACLQH-----NQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA--- 415 (579)
Q Consensus 347 ---~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--- 415 (579)
.++.++|.+.|+..-..-+...+..+...|... +++++|..+|++..+.| +...+..+...+...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 788888888888874444667777788888877 89999999999988875 3445566666665545
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcHHH
Q 043608 416 SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ----FGCGDEA 486 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a 486 (579)
+.++|.+.+++..+.+ ++..+..|...|.. .++.++|...|++..+ .+...+..+...|.. .+++++|
T Consensus 346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7889999999988764 67788888888888 8999999999998764 567788888888888 8999999
Q ss_pred HHHHHHHHhCCCC-C-ChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 487 LKLFTRMRSLGVS-P-NLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 487 ~~~~~~m~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
...|++..+.+.. | +......+...+ ..+.+.+.+..++..+
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~--~~~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLT--AKQLQQAELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcC--HhHHHHHHHHHHHHHH
Confidence 9999999987643 2 233333333222 2344454444444443
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.9e-16 Score=146.48 Aligned_cols=377 Identities=11% Similarity=0.105 Sum_probs=182.3
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
.|+.+..++.+.|++++|++.|.+. +|+.+|..++.++...|++++|..+++...+. .+++.+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 4889999999999999999999653 47779999999999999999999988887764 45578899999999
Q ss_pred HccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHH
Q 043608 81 GKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHA 160 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 160 (579)
.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.
T Consensus 105 ~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 105 AKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ----CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999988864 78889999999999999999999999976 479999999999999999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHh
Q 043608 161 HVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFI 240 (579)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 240 (579)
++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|..+++...... +-....
T Consensus 173 KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ 243 (449)
T 1b89_A 173 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGM 243 (449)
T ss_dssp HH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHH
T ss_pred Hc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHH
Confidence 87 378999999999999999999998888765 444445578899999999999999999987553 222233
Q ss_pred HHHHHHHHHHH--------HHHHhhcCCC-------CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 043608 241 FGSVFSACSNF--------ARILFNEIDS-------PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSL 305 (579)
Q Consensus 241 ~~~~l~~~~~~--------~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 305 (579)
+..+--.+++. .+..+.++.- .+...|..+.-.|...++++.|... |.+. +|+...-..+
T Consensus 244 ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f 318 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQF 318 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHH
Confidence 33332222211 2222333322 2466788888888888888877763 3333 2333333333
Q ss_pred HHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 043608 306 LCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEEL 385 (579)
Q Consensus 306 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 385 (579)
.....+..+.+--.+.....++. .+...+.|+.++...=|..++.++|+..+.-|=+..|-.-+ +..+...+
T Consensus 319 ~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v----~~~n~~~v 390 (449)
T 1b89_A 319 KDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSV----QNHNNKSV 390 (449)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHH----HTTCCHHH
T ss_pred HHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHH----HHhhHHHH
Confidence 33334444444333333333322 34457777777777777777777777776554444432111 12333444
Q ss_pred HHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHH
Q 043608 386 FRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQ 422 (579)
Q Consensus 386 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 422 (579)
-+.+.++.-. .-|..+...-|.+|-.-.....|.+
T Consensus 391 nealn~l~ie--eed~~~lr~si~~~~nfd~~~l~~~ 425 (449)
T 1b89_A 391 NESLNNLFIT--EEDYQALRTSIDAYDNFDNISLAQR 425 (449)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHCCCSCHHHHHHH
T ss_pred HHHHHHHHHh--hhhHHHHHHHHHHhcCcCHHHHHHH
Confidence 4444443221 2355555555555544444444433
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.7e-16 Score=148.45 Aligned_cols=279 Identities=11% Similarity=0.004 Sum_probs=156.6
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
.+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 445556666666666777777777777766542 2233444445556666666666666666666654 23455566666
Q ss_pred HHHHhcC-ChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChH
Q 043608 342 TMYAKCS-VLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLE 418 (579)
Q Consensus 342 ~~~~~~~-~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 418 (579)
..+...| ++++|...|+.. ...| +...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 6666666 666666666654 2222 34456666666666666666666666665542 223344444555666666666
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC------------CChhhHHHHHHHHHhcCCcHHH
Q 043608 419 MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN------------PDVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 419 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a 486 (579)
+|...++...+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666665543 22445555566666666666666665554431 1133555555566666666666
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHH
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLL 548 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 548 (579)
...+++..+.. +.+...+..+...+...|++++|...+++..+ +.| +...+..+..++
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG---LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT---TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc---cCCCchHHHHHHHHHH
Confidence 66666655542 22344555555666666666666666665543 233 233444444444
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5e-17 Score=150.42 Aligned_cols=280 Identities=11% Similarity=0.113 Sum_probs=119.0
Q ss_pred CCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 148 GLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
+.|++++|.++++++ ++..+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345566666666655 22346667777777777777777777543 4555777777777777777777776665
Q ss_pred HHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 043608 228 MLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLC 307 (579)
Q Consensus 228 m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 307 (579)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..+..
T Consensus 87 ark~-----------------------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd 130 (449)
T 1b89_A 87 ARKK-----------------------------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 130 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT-------CC----------
T ss_pred HHHh-----------------------------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHH
Confidence 5543 3445667777778888888877777664 366667888888
Q ss_pred HhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043608 308 ACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFR 387 (579)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 387 (579)
.|...|.++.|..+|..+ ..|..++.++.+.|++++|.+.++..+ ++.+|..++.+|...|+++.|..
T Consensus 131 ~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~---~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp ------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC---CchhHHHHHHHHHHcCcHHHHHH
Confidence 888888888888888755 367788888888888888888888773 67788888888888888888855
Q ss_pred HHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc--CCHHHHHHHHhhCCC-
Q 043608 388 LFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC--GSLGSARKLFNFMEN- 464 (579)
Q Consensus 388 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~- 464 (579)
....+. ..|+. ...++..|.+.|.+++|..+++...... +.....|+.|.-+|++- +++.+..+.|..-..
T Consensus 199 ~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini 272 (449)
T 1b89_A 199 CGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 272 (449)
T ss_dssp TTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred HHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 444321 23333 4457777888888888888888776544 44566667666666654 345555555554332
Q ss_pred -------CChhhHHHHHHHHHhcCCcHHHHHH
Q 043608 465 -------PDVVSWSSLILGYAQFGCGDEALKL 489 (579)
Q Consensus 465 -------~~~~~~~~l~~~~~~~~~~~~a~~~ 489 (579)
.+...|.-+...|...++++.|...
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 2466788888888888998888763
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.7e-16 Score=146.08 Aligned_cols=286 Identities=12% Similarity=-0.013 Sum_probs=202.7
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~~~~~~~~~~~~ 72 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----------------------------PFHASCLPVHIGTLVELNKA 72 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCTTTHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------CCChhhHHHHHHHHHHhhhH
Confidence 44455666667777777777777777777664 34455566666777777777
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhccc-chhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRL-TLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (579)
++|..+++++.+.. +.+...+..+...+...| ++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.
T Consensus 73 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 73 NELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp HHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777776642 234556666666777777 7777777777777664 33566677777888888888888888877
Q ss_pred c--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcC------
Q 043608 360 L--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTG------ 431 (579)
Q Consensus 360 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 431 (579)
. ..+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+..
T Consensus 151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 229 (330)
T 3hym_B 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229 (330)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence 5 112245566667788888888888888888887763 4456677777888888888888888888777532
Q ss_pred --CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHH
Q 043608 432 --LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTL 505 (579)
Q Consensus 432 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~ 505 (579)
.+....++..+..+|.+.|++++|...+++..+ .+...|..+...|...|++++|.+.+++..+. .| +...+
T Consensus 230 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 307 (330)
T 3hym_B 230 VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSV 307 (330)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHH
Confidence 133456788888888888888888888887762 45677888888888889999999998888774 34 45667
Q ss_pred HHHHHHh-hccCchH
Q 043608 506 VGVLTAC-SHVGLVE 519 (579)
Q Consensus 506 ~~l~~~~-~~~g~~~ 519 (579)
..+..++ ...|+.+
T Consensus 308 ~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 308 TMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhCchh
Confidence 7777766 4555543
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=4.9e-17 Score=154.67 Aligned_cols=285 Identities=13% Similarity=0.048 Sum_probs=200.4
Q ss_pred CCChHHHHH-HHHHHHhCCC-CC--ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHH
Q 043608 277 HSNANEAMS-LFSEMRDREL-LP--DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCN 352 (579)
Q Consensus 277 ~~~~~~a~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (579)
.|++++|.+ .+++...... .| +...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554432210 11 23345555666666666666666666666654 3355666677777777777777
Q ss_pred HHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHH---------------HHHHHhccC
Q 043608 353 ALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFND---------------VMGACAKMA 415 (579)
Q Consensus 353 a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------l~~~~~~~~ 415 (579)
|.+.|+.. ..+.+..++..+...+...|++++|...++++...... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 77777765 12225667777777888888888888888887775321 1111111 233334889
Q ss_pred ChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHH
Q 043608 416 SLEMVTQLHCYITKTGLAF-DVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFT 491 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 491 (579)
++++|...++++.+..... +..++..+..+|.+.|++++|...++++.+ .+...|..+...+...|++++|...++
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998765432 578889999999999999999999998763 456789999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC---------CCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 492 RMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGII---------PTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 492 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
++.+.. +.+...+..+..++...|++++|...++++.+...-. ....++..+..+|.+.|+.++|..+++
T Consensus 276 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 276 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 998863 3457789999999999999999999999988642111 014688999999999999999999887
Q ss_pred hh
Q 043608 563 QM 564 (579)
Q Consensus 563 ~~ 564 (579)
+-
T Consensus 355 ~~ 356 (368)
T 1fch_A 355 RD 356 (368)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.3e-15 Score=152.07 Aligned_cols=399 Identities=11% Similarity=0.044 Sum_probs=205.5
Q ss_pred CCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--CCeeehhHHhh
Q 043608 32 RIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--RNVVSWTAMIA 109 (579)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 109 (579)
|-+...|..++.. .+.|++++|..+|+.+++.. |.+...|...+..+.+.|++++|..+|++..+ |+...|..++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4455667777763 56677777777887777654 55666777777777777778888777777664 55555555554
Q ss_pred hh-hcCCChhhHHH----HHHHHHHC-CCCCC-cccHHHHHHHhcC---------CCcchhHHHHHHHHHHhccCCChhH
Q 043608 110 GC-SQNYQENDAIK----LYIQMLQS-GVMPG-QFTFGSIIKACSG---------LGSVCLGRQLHAHVIKSEHGSHLIA 173 (579)
Q Consensus 110 ~~-~~~~~~~~a~~----~~~~~~~~-g~~p~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (579)
.. ...|+.+.|.+ +|++.... |..|+ ...|...+..... .|+++.|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 34566666554 55555432 43333 3344444443322 5677777777777776211111122
Q ss_pred HHHHHHHH-------------hcCCCHHHHHHHhcc-------cC------CCc--------HhhHHHHHHHHHhc----
Q 043608 174 QNALIAMY-------------TKFDRILDARNVFSG-------IA------RKD--------VTSWGSMIAAFSKL---- 215 (579)
Q Consensus 174 ~~~l~~~~-------------~~~g~~~~a~~~~~~-------~~------~~~--------~~~~~~l~~~~~~~---- 215 (579)
|....... ...++++.|..+++. +. .|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 22221110 123445556554433 11 111 23444444332221
Q ss_pred CCh----HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc-------CCChH---
Q 043608 216 GYE----LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS-------HSNAN--- 281 (579)
Q Consensus 216 ~~~----~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~--- 281 (579)
++. .++..+|++..... +.+...|......+.+ .|+++
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~----------------------------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL----------------------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 122 25566666666542 4567777777777764 68876
Q ss_pred ----HHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCC-chhHHHHHHHHHhcCChHHHHH
Q 043608 282 ----EAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSN-VPVCNAILTMYAKCSVLCNALL 355 (579)
Q Consensus 282 ----~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 355 (579)
+|..+|+..... +.| +...+..+...+.+.|++++|..+++.+.+.... + ..+|..++..+.+.|++++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777642 233 3444555555555666666666666666654211 1 1244444444444555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCC
Q 043608 356 VFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA-CAKMASLEMVTQLHCYITKTGLAF 434 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~ 434 (579)
+|+. ..+.. +.+...+...... +...|+.++|..+|+...+.. +.
T Consensus 378 ~~~~--------------------------------Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~ 423 (530)
T 2ooe_A 378 IFKK--------------------------------AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GD 423 (530)
T ss_dssp HHHH--------------------------------HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TT
T ss_pred HHHH--------------------------------HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CC
Confidence 5544 44321 1111111111111 112444555555555444332 12
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-D----VVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
++..+..++..+.+.|+.++|..+|++... | + ...|...+......|+.+.+.++++++.+.
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555554431 1 1 124555555555666666666666666553
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=3.8e-15 Score=148.65 Aligned_cols=401 Identities=9% Similarity=0.027 Sum_probs=251.7
Q ss_pred CcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCC--CcHhhHHHHHHHH
Q 043608 135 GQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIAR--KDVTSWGSMIAAF 212 (579)
Q Consensus 135 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 212 (579)
+...|..++.. ...|+++.|..+++++++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 33445555542 44556666666666655542 33455566666666666777777777766544 3444555555422
Q ss_pred -HhcCChHHHHH----HHHHHHhc-CCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc---------C
Q 043608 213 -SKLGYELEALC----HFNEMLHH-GAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS---------H 277 (579)
Q Consensus 213 -~~~~~~~~a~~----~~~~m~~~-~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~ 277 (579)
...|+.+.|.+ +|+..... |. . .++...|...+....+ .
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~-~-------------------------~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGM-E-------------------------IMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTT-S-------------------------TTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCC-C-------------------------cccHHHHHHHHHHHhcCCCcccHHHH
Confidence 34566666555 55555433 33 1 2334455555554433 5
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHH---h----------hcccchhhHHHHHHHHH------HcC---CCCC--
Q 043608 278 SNANEAMSLFSEMRDRELLPDGLTVHSLLCA---C----------IGRLTLYQGMQVHSYII------KMG---FDSN-- 333 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~----------~~~~~~~~a~~~~~~~~------~~~---~~~~-- 333 (579)
|+++.|..+|+........+....|...... + ...+++..|..++..+. +.. ++|+
T Consensus 144 ~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 7888999999888873111111223221111 0 13455666766666532 111 2333
Q ss_pred ------chhHHHHHHHHHhc----CCh----HHHHHHHHHc--CCCCChhhHHHHHHHHHh-------cCCHH-------
Q 043608 334 ------VPVCNAILTMYAKC----SVL----CNALLVFKEL--GKNADSVSWNSIIAACLQ-------HNQAE------- 383 (579)
Q Consensus 334 ------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~--~~~~~~~~~~~l~~~~~~-------~~~~~------- 383 (579)
...|...+...... ++. +++..+|++. ..+.+...|..++..+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 13444444332221 232 3666777765 222366778777777765 68876
Q ss_pred HHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 384 ELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 384 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
+|..+|++..+.-.+.+...+..++..+...|++++|..+++++.+.........|..++..+.+.|++++|..+|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 89999999876323345777888888888999999999999999885322113578888888889999999999999887
Q ss_pred C--CC-hhhHHHHHHH-HHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--
Q 043608 464 N--PD-VVSWSSLILG-YAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-- 537 (579)
Q Consensus 464 ~--~~-~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 537 (579)
+ |+ ...|...... +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++........|+
T Consensus 384 ~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 384 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 5 22 2222222222 336899999999999998752 335678889999999999999999999999875222332
Q ss_pred cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 538 REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...|...+......|+.+.+..+.+++
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 226777788888899999999998887
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.4e-16 Score=151.60 Aligned_cols=267 Identities=14% Similarity=0.047 Sum_probs=139.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHH
Q 043608 174 QNALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSN 250 (579)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~ 250 (579)
+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|.+.|+++.+..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------ 128 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK------------------ 128 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC------------------
Confidence 44444455555555555555544432 234455566666666666666666666666553
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHH-HHHHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 251 FARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLT-VHSLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
+.+..++..+...+...|++++|.+.++++.... |+... +... +.... .
T Consensus 129 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-------~~~~~-----------~ 178 (368)
T 1fch_A 129 ----------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-------EEGAG-----------G 178 (368)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------------
T ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH-------HHHhh-----------h
Confidence 3455566666666666666666666666666542 22111 1000 00000 0
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHH
Q 043608 330 FDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA---DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFN 405 (579)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 405 (579)
..+ ...+..+.. +...|++++|...|+.+ ...| +...+..+...+...|++++|...++++.... +.+...+.
T Consensus 179 ~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 255 (368)
T 1fch_A 179 AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWN 255 (368)
T ss_dssp --------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 000 000001111 22455555555555554 1111 34555556666666666666666666655542 22345555
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-C-----------hhhHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-D-----------VVSWS 471 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-----------~~~~~ 471 (579)
.+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...++++.+ | + ...|.
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 66666666666666666666665543 22455566666666666666666666665542 1 1 45667
Q ss_pred HHHHHHHhcCCcHHHHHHHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTR 492 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~ 492 (579)
.+..+|...|++++|..++++
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCChHhHHHhHHH
Confidence 777777777777777766653
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=5.3e-16 Score=147.29 Aligned_cols=259 Identities=11% Similarity=0.019 Sum_probs=186.9
Q ss_pred HHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhc
Q 043608 302 VHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQH 379 (579)
Q Consensus 302 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~ 379 (579)
+..+...+.+.|++++|...++.+.+.. +.+..++..+...+...|++++|...|++. ..+.+..++..+...|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 4444444444455555555555444443 234556666677777777777777777665 1222566788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCcH-----------hHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CchhHHHHHHHHHH
Q 043608 380 NQAEELFRLFSRMLASQIKPDH-----------ITFNDVMGACAKMASLEMVTQLHCYITKTGLA-FDVFVMNGLMDIYI 447 (579)
Q Consensus 380 ~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 447 (579)
|++++|...++++.+.. |+. ..+..+...+...|++++|...++++.+.... ++..++..+...|.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888887642 321 22334577888899999999999999877543 26788899999999
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHH
Q 043608 448 KCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
..|++++|...++++.+ .+..+|..+..+|...|++++|...++++.+.. +.+..++..+..+|...|++++|...
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998763 457889999999999999999999999999863 33477899999999999999999999
Q ss_pred HHHHHHhhCCC----------CCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 525 YRIMENEYGII----------PTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 525 ~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
++++.+...-. .+...+..+..++...|+.+.|..+.++-
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99988652110 12568899999999999999999888763
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=6.5e-16 Score=146.65 Aligned_cols=274 Identities=11% Similarity=-0.052 Sum_probs=177.3
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...+...|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~~~~~lg~~~~~~g~~ 115 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD----------------------------PGDAEAWQFLGITQAENENE 115 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------cCCHHHHHHHHHHHHHCCCH
Confidence 44567888888888899999999998888764 45677888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL 360 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (579)
++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+.
T Consensus 116 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~------------------- 174 (365)
T 4eqf_A 116 QAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK------------------- 174 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC------------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------
Confidence 88888888887652 223555666666666677777777776666654311 000010000
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHH
Q 043608 361 GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIK-PDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVM 439 (579)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 439 (579)
.....+..+...+...|++++|...++++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++
T Consensus 175 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 250 (365)
T 4eqf_A 175 ---GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLW 250 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ---cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 01223334455666667777777777776665311 145666666777777777777777777766654 2356677
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-----------CChhHH
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS-----------PNLVTL 505 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----------p~~~~~ 505 (579)
..+..+|.+.|++++|...++++.+ | +...|..+...|.+.|++++|...++++.+.... .+...|
T Consensus 251 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 251 NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 7777777777777777777776652 3 4667777888888888888888888887753211 025678
Q ss_pred HHHHHHhhccCchHHHHHHHHH
Q 043608 506 VGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 506 ~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
..+..++...|+.+.+....++
T Consensus 331 ~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 331 AALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888888888888877665
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=4.8e-15 Score=134.64 Aligned_cols=249 Identities=8% Similarity=-0.003 Sum_probs=139.8
Q ss_pred CCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 148 GLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
..|+++.|+...+........+.......+.++|...|+++.|+..++....++..++..+...+...++.++|++.+++
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDR 90 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34555555555544332221111223344566777777777777777665444556666777777777777777777777
Q ss_pred HHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 043608 228 MLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLC 307 (579)
Q Consensus 228 m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 307 (579)
+...+. . +.+...+..+...+...|++++|++.++. +.+...+..+..
T Consensus 91 ll~~~~-~-------------------------P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~ 138 (291)
T 3mkr_A 91 EMSRSV-D-------------------------VTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQ 138 (291)
T ss_dssp HHHSCC-C-------------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHH
T ss_pred HHhccc-C-------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHH
Confidence 766543 0 22344455555667777777777777765 345556666666
Q ss_pred HhhcccchhhHHHHHHHHHHcCCCCCchhH---HHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCH
Q 043608 308 ACIGRLTLYQGMQVHSYIIKMGFDSNVPVC---NAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQA 382 (579)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 382 (579)
.+.+.|++++|.+.++.+.+.. |+.... ...+..+...|++++|..+|+++ ..+.+...++.+..++.+.|++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 6666777777777777666653 222111 11223333345666666666555 2223455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHH-HHHHHHHHHHcC
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEM-VTQLHCYITKTG 431 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 431 (579)
++|...|++..... +-+..++..++..+...|+.++ +.++++++.+..
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 66666666655542 2244455555555555555543 445555555443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=4.5e-15 Score=138.50 Aligned_cols=256 Identities=11% Similarity=0.048 Sum_probs=153.2
Q ss_pred HHHHHHhcCCCHHHHHHHhcccCC---CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHH
Q 043608 176 ALIAMYTKFDRILDARNVFSGIAR---KDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFA 252 (579)
Q Consensus 176 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~ 252 (579)
.+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+..
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 85 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------------------- 85 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Confidence 334444455555555555544332 244556666666777777777777777766653
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-HHHHH--------------HH-Hhhcccchh
Q 043608 253 RILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGL-TVHSL--------------LC-ACIGRLTLY 316 (579)
Q Consensus 253 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~~~~~ 316 (579)
+.+...+..+...+...|++++|.+.++++... .|+.. .+..+ .. .+...|+++
T Consensus 86 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 86 --------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHH
T ss_pred --------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence 345566666777777777777777777777654 22222 11111 11 256667777
Q ss_pred hHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 317 QGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
+|...++.+.+.. +.+..++..+...+...|++++|.+.++.. ..+.+...+..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777776664 235566666677777777777777777664 1222455666677777777777777777777665
Q ss_pred CCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 395 SQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAF-----------DVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 395 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
.. +.+...+..+...+...|++++|.+.++.+.+..... +...+..+..++.+.|+.++|..+++...
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 42 2345566666666667777777777776666443221 34555666666666666666666665543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=3.5e-15 Score=139.25 Aligned_cols=261 Identities=13% Similarity=-0.035 Sum_probs=183.8
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHH
Q 043608 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILT 342 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (579)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~---------- 87 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK---------- 87 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC----------
Confidence 34455666677777777777777777776542 1233344444445555555555555555554442 11
Q ss_pred HHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-hHHHHH--------------
Q 043608 343 MYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-ITFNDV-------------- 407 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l-------------- 407 (579)
+...+..+...+...|++++|...++++.+.. |+. ..+..+
T Consensus 88 ----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 143 (327)
T 3cv0_A 88 ----------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQS 143 (327)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC------------------
T ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHH
Confidence 34455555555566666666666666655542 221 111111
Q ss_pred HH-HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCc
Q 043608 408 MG-ACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCG 483 (579)
Q Consensus 408 ~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 483 (579)
.. .+...|++++|...++++.+... .+...+..+...|.+.|++++|...++++.+ .+...|..+...+...|++
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 22 36778889999999998887653 3678888899999999999999999988763 4567888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-------------cchhHHHHHHHHh
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-------------REHCSCVVDLLAR 550 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~ 550 (579)
++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+ ...+..+..++.+
T Consensus 223 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 223 QEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHh
Confidence 99999999998863 335778899999999999999999999999865 233 5678889999999
Q ss_pred cCChhHHHHHHHhh
Q 043608 551 AGCVHEAEDFINQM 564 (579)
Q Consensus 551 ~g~~~~A~~~~~~~ 564 (579)
.|++++|..++++.
T Consensus 299 ~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 299 MNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999998766
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=1.1e-15 Score=138.96 Aligned_cols=244 Identities=9% Similarity=0.038 Sum_probs=121.8
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 043608 272 AGVASHSNANEAMSLFSEMRDRELLPDG--LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (579)
+-....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 4455567777777777655432 3332 2333444555666666655544332 123344445555555555555
Q ss_pred hHHHHHHHHHc---CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHH
Q 043608 350 LCNALLVFKEL---GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHC 425 (579)
Q Consensus 350 ~~~a~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 425 (579)
.++|++.++++ +..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666555553 1112 333344444555555666666655554 2344455555555555566666666555
Q ss_pred HHHHcCCCCchhHH---HHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 043608 426 YITKTGLAFDVFVM---NGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS 499 (579)
Q Consensus 426 ~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 499 (579)
.+.+.. |+.... ..++..+...|++++|..+|+++.+ .+...|+.+..++.+.|++++|...+++..+.. +
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 555443 221111 1122223333555555555555542 334445555555555555555555555555432 1
Q ss_pred CChhHHHHHHHHhhccCchHH-HHHHHHHHHH
Q 043608 500 PNLVTLVGVLTACSHVGLVEE-GLHLYRIMEN 530 (579)
Q Consensus 500 p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 530 (579)
-+..++..++..+...|+.++ +.++++++.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 234455555555555555543 3455555553
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=166.77 Aligned_cols=132 Identities=14% Similarity=0.016 Sum_probs=117.1
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCC
Q 043608 202 VTSWGSMIAAFSKLGYELEALCHFNEML---HHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHS 278 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 278 (579)
..+|+++|++|++.|++++|.++|++|. ..|+ .||+.+||+||++|++.|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---------------------------~PdvvTYNtLI~Glck~G 179 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---------------------------LLTLDMYNAVMLGWARQG 179 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---------------------------TCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---------------------------CCCHhHHHHHHHHHHhCC
Confidence 4689999999999999999999998876 4577 899999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccch-hhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 043608 279 NANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTL-YQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVF 357 (579)
Q Consensus 279 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (579)
++++|.++|++|.+.|+.||..||+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++.
T Consensus 180 ~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999985 789999999999999999999999988777655444444443
Q ss_pred HHc
Q 043608 358 KEL 360 (579)
Q Consensus 358 ~~~ 360 (579)
.++
T Consensus 260 P~f 262 (1134)
T 3spa_A 260 PTF 262 (1134)
T ss_dssp CCC
T ss_pred ccc
Confidence 333
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=164.40 Aligned_cols=129 Identities=11% Similarity=0.085 Sum_probs=108.9
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL------GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFND 406 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 406 (579)
...+|+++|++||+.|++++|.++|++| +..||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3457888999999999999999888665 4678999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 043608 407 VMGACAKMASL-EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNF 461 (579)
Q Consensus 407 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 461 (579)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 99999999874 78899999999999999999999988877766555544444333
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=5.9e-14 Score=136.24 Aligned_cols=347 Identities=7% Similarity=-0.053 Sum_probs=233.1
Q ss_pred HHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCCh---hhHHHhhcCCCCCCeeehhHHhhhhhcCC-
Q 043608 40 GLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSL---EDARMGFDKMPQRNVVSWTAMIAGCSQNY- 115 (579)
Q Consensus 40 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~- 115 (579)
.+...+.+.|++++|.+.|+...+.| ++..+..+...|...|+. ++|.+.|++..+.++..+..|...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667788899999999999998876 334445556666677887 89999999988777778888877555554
Q ss_pred ----ChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCC----H
Q 043608 116 ----QENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDR----I 187 (579)
Q Consensus 116 ----~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~ 187 (579)
++++|...|++..+.| +...+..|...|...+..+.+...++.+.+.....+......+...|...+. .
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 7889999999999876 3347777777777666555444444444433222345566667777777774 4
Q ss_pred HHHHHHhcccCCCcHhhHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh
Q 043608 188 LDARNVFSGIARKDVTSWGSMIAAFSKLG---YELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL 264 (579)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (579)
+.+..+++.....++.++..|...|...| +.++|++.|++..+.| +++.
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----------------------------~~~a 213 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG----------------------------TVTA 213 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----------------------------CSCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC----------------------------CHHH
Confidence 55666677767777779999999999999 9999999999999887 5666
Q ss_pred hhHHHHHHHHHcC----CChHHHHHHHHHHHhCCCCCChHHHHHHHHH-h--hcccchhhHHHHHHHHHHcCCCCCchhH
Q 043608 265 ASWNALIAGVASH----SNANEAMSLFSEMRDRELLPDGLTVHSLLCA-C--IGRLTLYQGMQVHSYIIKMGFDSNVPVC 337 (579)
Q Consensus 265 ~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (579)
..+..+...|... ++.++|.+.|+... .| +...+..+-.. + ...++.++|...++...+.| ++...
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 6666677777554 79999999999987 33 33444444443 2 45889999999999999887 66677
Q ss_pred HHHHHHHHhcC-----ChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 338 NAILTMYAKCS-----VLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 338 ~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
..+...|. .| ++++|.+.|+..- +-+...+..+...|.. ..++++|..+|++..+.|. ......+.
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg 361 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIA 361 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHH
Confidence 77777776 45 8999999999887 6577778888777766 3488999999999888764 23344444
Q ss_pred HHHhc----cCChHHHHHHHHHHHHcCC
Q 043608 409 GACAK----MASLEMVTQLHCYITKTGL 432 (579)
Q Consensus 409 ~~~~~----~~~~~~a~~~~~~~~~~~~ 432 (579)
..|.. ..+..+|...++...+.|.
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 44443 4577888888887777663
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.9e-13 Score=134.67 Aligned_cols=364 Identities=9% Similarity=-0.017 Sum_probs=218.7
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHhcccC------------CCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChH
Q 043608 172 IAQNALIAMYTKFDRILDARNVFSGIA------------RKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEF 239 (579)
Q Consensus 172 ~~~~~l~~~~~~~g~~~~a~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 239 (579)
..|+.+...+...|++++|++.|++.. .....+|+.+...|...|++++|...+++..+.....++
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~-- 129 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS-- 129 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc--
Confidence 344444444455555555544443321 113457788888888888888888888776543100000
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc--CCChHHHHHHHHHHHhCCCCCChH-HHHHHHHH---hhccc
Q 043608 240 IFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS--HSNANEAMSLFSEMRDRELLPDGL-TVHSLLCA---CIGRL 313 (579)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~---~~~~~ 313 (579)
........++..+..++.. .+++++|.+.|++..+. .|+.. .+..+..+ +...+
T Consensus 130 ------------------~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~ 189 (472)
T 4g1t_A 130 ------------------PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWP 189 (472)
T ss_dssp ------------------SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSC
T ss_pred ------------------ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCch
Confidence 0001234455555544444 46799999999998875 45543 33333333 34567
Q ss_pred chhhHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043608 314 TLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAK----CSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFR 387 (579)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~ 387 (579)
+.++|++.++...+... .+..++..+...+.. .++.++|.+.+++. ..+.+...+..+...|...|++++|..
T Consensus 190 ~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 190 PSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp CCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHH
Confidence 78889999998888753 345555555544444 46788999999875 223366788899999999999999999
Q ss_pred HHHHHHHCCCCCcHhHHHHHHHHHhc-------------------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 043608 388 LFSRMLASQIKPDHITFNDVMGACAK-------------------MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK 448 (579)
Q Consensus 388 ~~~~m~~~~~~p~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (579)
.+++..+.. +.+..++..+...+.. .+..+.|...++...+... .+...+..+...|..
T Consensus 269 ~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 269 LLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHH
Confidence 999988763 2344555555444322 1235567777777776543 345667788889999
Q ss_pred cCCHHHHHHHHhhCC--CCChhh----HHHHHH-HHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHH
Q 043608 449 CGSLGSARKLFNFME--NPDVVS----WSSLIL-GYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~--~~~~~~----~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 521 (579)
.|++++|...|++.. .|+... +..+.. .+...|++++|+..+++..+. .|+..... +....+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHH
Confidence 999999999998775 343322 222222 234678899999999998874 55543222 223444
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh----cCCCChhHh
Q 043608 522 LHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM----ACDADIVVW 573 (579)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 573 (579)
.+++++..+. -+.+..++..|..+|...|++++|.+.+++. +..|+..+|
T Consensus 416 ~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 416 QKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 5566665543 3456778999999999999999999999988 345666655
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.3e-14 Score=141.18 Aligned_cols=251 Identities=8% Similarity=-0.092 Sum_probs=127.5
Q ss_pred cCCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHh----hcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 276 SHSNANEAMSLFSEMRDRELLPD-GLTVHSLLCAC----IGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
..++.++|++.+++..+. .|+ ...+..+...+ ...++.++|.+.++...+.. +.+..++..+...|...|++
T Consensus 187 ~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp HSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH
T ss_pred CchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCch
Confidence 345555666666555543 232 22222222222 23345566666666665554 23445556666666666666
Q ss_pred HHHHHHHHHc-CCCC-ChhhHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 043608 351 CNALLVFKEL-GKNA-DSVSWNSIIAACLQ-------------------HNQAEELFRLFSRMLASQIKPDHITFNDVMG 409 (579)
Q Consensus 351 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 409 (579)
++|...+++. ...| +..++..+..+|.. .+..+.|...+++..+.. +.+..++..+..
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 6666666654 1112 33344444433321 123566777777766653 334556777788
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchh--HHHHHHH-HHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCcH
Q 043608 410 ACAKMASLEMVTQLHCYITKTGLAFDVF--VMNGLMD-IYIKCGSLGSARKLFNFMEN--PDVVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 484 (579)
.+...|++++|.+.|++..+....+... .+..+.. .+...|+.++|...|++..+ |+...... ..+
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~ 413 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKD 413 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHH
Confidence 8888888888888888887765443321 2222222 23467888888888887653 44322221 223
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcch
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREH 540 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 540 (579)
.+.+++++..+.+ +.+..+|..+...|...|++++|++.|++..+.....|+..+
T Consensus 414 ~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 414 KLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 4455566665543 445778888999999999999999999988865344455443
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=9.8e-14 Score=134.71 Aligned_cols=173 Identities=12% Similarity=-0.036 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC-----ChHH
Q 043608 348 SVLCNALLVFKELGKNADSVSWNSIIAA-C--LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA-----SLEM 419 (579)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~ 419 (579)
+++++|.+.|+... +-+...+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++
T Consensus 231 ~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp CCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred CCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 35555555555544 3344444444444 2 23455555666665555544 3333333333333 22 5555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----cCCcHHHHHHH
Q 043608 420 VTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ----FGCGDEALKLF 490 (579)
Q Consensus 420 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 490 (579)
|...|++.. .-++.....|...|.. ..+.++|...|+...+ .+......|...|.. .++.++|...|
T Consensus 306 A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 306 AEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 555555444 2234444444444443 2255555555555443 233344444444442 23555666666
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 491 TRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 491 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+...+.|. ++.......+......++..+|..+.++..+
T Consensus 382 ~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 382 QLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66655542 2222222222223333455555555555443
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=7.2e-13 Score=119.83 Aligned_cols=233 Identities=11% Similarity=-0.019 Sum_probs=177.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHH
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD--HITFNDVMGAC 411 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~ 411 (579)
........+...|++++|+..|++. ...| +...+..+...+...|++++|...+++..+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445566777788888888888775 2222 455788888888888999999999988887432222 22477788888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHH
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALK 488 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 488 (579)
...|++++|...+++..+... .+...+..+..+|...|++++|...+++..+ .+...|..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998887653 3567888999999999999999999999885 345666667634445569999999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhccCc---hHHHHHHHHHHHHhhCCCCCc------chhHHHHHHHHhcCChhHHHH
Q 043608 489 LFTRMRSLGVSPNLVTLVGVLTACSHVGL---VEEGLHLYRIMENEYGIIPTR------EHCSCVVDLLARAGCVHEAED 559 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 559 (579)
.++++.+.. +.+...+..+...+...|+ +++|...+++..+...-.|+. ..+..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999863 2346677788888888888 888999999988764334543 467788999999999999999
Q ss_pred HHHhh-cCCCCh
Q 043608 560 FINQM-ACDADI 570 (579)
Q Consensus 560 ~~~~~-~~~~~~ 570 (579)
.+++. ...|+.
T Consensus 243 ~~~~al~~~p~~ 254 (272)
T 3u4t_A 243 AWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCccH
Confidence 99988 445653
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=1.8e-13 Score=118.63 Aligned_cols=195 Identities=14% Similarity=0.030 Sum_probs=126.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 44455555666666666666666666665542 23445555555666666666666666666665542 24455566666
Q ss_pred HHHHc-----------CCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 445 IYIKC-----------GSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 445 ~~~~~-----------~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
++... |++++|...+++..+ | +...|..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 888888888877763 4 45677788888889999999999999988876 67778888888
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 511 ACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
++...|++++|+..+++..+. -+.+...+..+..++.+.|++++|...+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999998864 23345677888888999999999999888763
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.8e-13 Score=121.42 Aligned_cols=215 Identities=10% Similarity=-0.043 Sum_probs=110.8
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCC----CC----hhhHHH
Q 043608 301 TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKN----AD----SVSWNS 371 (579)
Q Consensus 301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~----~~----~~~~~~ 371 (579)
.+..+...+...|++++|...++.+.+.. .+..++..+..++...|++++|.+.++.. ... |+ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555666666666666665555 44555555555555555555555555543 000 01 234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 372 IIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 372 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
+...+...|++++|...|++.... .|+. ..+.+.|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~~~ 120 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKLRN 120 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHHhH
Confidence 555555555555555555555443 2332 12333444
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 452 LGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 452 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
+++|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455544444432 122344455555556666666666666655542 223445555666666666666666666665
Q ss_pred HHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 529 ENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+. .+.+...+..+..+|.+.|++++|.+.+++.
T Consensus 200 l~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 200 IEK--DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 543 1223445555566666666666666666555
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=2.1e-12 Score=115.25 Aligned_cols=206 Identities=9% Similarity=-0.026 Sum_probs=144.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 3456666667777777777777777776652 33456666677777777777777777777776542 255667777777
Q ss_pred HHHcCCHHHHHHHHhhCCC----C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHH
Q 043608 446 YIKCGSLGSARKLFNFMEN----P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEE 520 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 520 (579)
|...|++++|.+.++++.+ | +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 7888888888888777654 2 34556677777888888888888888887753 2346677788888888888888
Q ss_pred HHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhh
Q 043608 521 GLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSL 576 (579)
Q Consensus 521 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 576 (579)
|...++++.+. .+.+...+..+...+.+.|++++|.++++++ ...|+...+..+
T Consensus 194 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 88888887752 2334556777778888888888888888887 344554444433
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.5e-12 Score=116.54 Aligned_cols=224 Identities=9% Similarity=-0.040 Sum_probs=156.6
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCC--C----chhH
Q 043608 264 LASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS--N----VPVC 337 (579)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 337 (579)
...|..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...++.+.+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788899999999999999999999877 788899999999999999999999999988764322 2 5788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC
Q 043608 338 NAILTMYAKCSVLCNALLVFKEL-GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS 416 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 416 (579)
..+...+...|++++|...|+.. ...|+. ..+...|++++|...++++.... +.+...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 88999999999999999999886 333342 34666788999999999988752 2234456666666777777
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 417 LEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
+++|...++...+.... +...+.. +...|...|++++|...+++..+.
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~-------------------------------l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSN-------------------------------RAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHH-------------------------------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHH-------------------------------HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77777777776654321 3344444 444445555555555555555443
Q ss_pred CCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 497 GVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 497 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
. +.+...+..+..++...|++++|...+++..+
T Consensus 203 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 22344455555555555555555555555543
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=1.9e-12 Score=112.20 Aligned_cols=196 Identities=14% Similarity=0.001 Sum_probs=141.7
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
+++...+..+...+.+.|++++|...|+.. ... .+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 456667777777888888888888888775 322 356678888888888888888888888887763 33456777777
Q ss_pred HHHhcc-----------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHH
Q 043608 409 GACAKM-----------ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSLIL 475 (579)
Q Consensus 409 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~ 475 (579)
..+... |++++|...+++..+.... +...+..+..++...|++++|...|++..+ .+...+..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~ 159 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence 788888 8999999999988876533 567788888889999999999998887653 66777888899
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 476 GYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+|...|++++|+..+++..+.. +.+...+..+...+...|++++|+..+++.-
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999998853 3356688888999999999999999888764
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.6e-12 Score=112.37 Aligned_cols=208 Identities=8% Similarity=-0.055 Sum_probs=141.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 4455666666666777777777777666542 33455666666666777777777777776665542 245566667777
Q ss_pred HHHc-CCHHHHHHHHhhCCC----CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchH
Q 043608 446 YIKC-GSLGSARKLFNFMEN----PD-VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 446 ~~~~-~~~~~A~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 519 (579)
+... |++++|...++++.+ |+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777776654 21 4566777777888888888888888887753 234667778888888888888
Q ss_pred HHHHHHHHHHHhhCCC-CCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhhhc
Q 043608 520 EGLHLYRIMENEYGII-PTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSLLA 578 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 578 (579)
+|...++++.+. . + .+...+..+...+...|+.++|..+++.+ ...|+......+++
T Consensus 165 ~A~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 165 DADYYFKKYQSR-V-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHh-C-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 888888888764 1 2 34556667777778888888888888887 35676655555543
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=1e-11 Score=112.19 Aligned_cols=217 Identities=10% Similarity=-0.044 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 335 PVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
..+..+...+...|++++|...|+..-.+.+...+..+...+.. .+++++|...|++..+.+ +...+..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 34444555555555566665555554222244455555556666 666666666666666554 44555555555
Q ss_pred Hhc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh--
Q 043608 411 CAK----MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ-- 479 (579)
Q Consensus 411 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~-- 479 (579)
+.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...+++..+ .+...+..+...|..
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 160 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCC
Confidence 555 666666666666666553 45556666666666 6666666666665543 344455556666665
Q ss_pred --cCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHh---
Q 043608 480 --FGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH----VGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLAR--- 550 (579)
Q Consensus 480 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 550 (579)
.+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+...|..
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCC
Confidence 667777777777766653 34555566666666 67777777777766653 2 24455566666666
Q ss_pred -cCChhHHHHHHHhh
Q 043608 551 -AGCVHEAEDFINQM 564 (579)
Q Consensus 551 -~g~~~~A~~~~~~~ 564 (579)
.|++++|.+++++.
T Consensus 234 ~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 234 VTRNEKQAIENFKKG 248 (273)
T ss_dssp SSCCSTTHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 67777777777665
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=1.8e-13 Score=124.11 Aligned_cols=220 Identities=10% Similarity=-0.037 Sum_probs=182.3
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCC--CCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNI--RIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS 85 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 85 (579)
.+...|++++|+..|+.+...... +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 456779999999999999875221 1245678888899999999999999999999887 6678899999999999999
Q ss_pred hhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 86 LEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 86 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
+++|.+.|++..+ .+...|..+...+.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999998873 45778999999999999999999999999885 566655555556667779999999999888
Q ss_pred HHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCc-------HhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 043608 163 IKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKD-------VTSWGSMIAAFSKLGYELEALCHFNEMLHHG 232 (579)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 232 (579)
..... ++...+ .++..+...++.++|...+++....+ ...+..+...+.+.|++++|.+.|++..+..
T Consensus 171 ~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 87643 333444 47778888899999999998877642 4678889999999999999999999998763
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=3e-12 Score=115.93 Aligned_cols=216 Identities=8% Similarity=-0.069 Sum_probs=113.1
Q ss_pred HcCCChHHHHHHHHHHHhCCCC--C-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChH
Q 043608 275 ASHSNANEAMSLFSEMRDRELL--P-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLC 351 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (579)
...|++++|+..++++.+.... | +...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3456778888888887765321 1 34455566666667777777777777776654 234556666666666666666
Q ss_pred HHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 043608 352 NALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITK 429 (579)
Q Consensus 352 ~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 429 (579)
+|.+.|+.. . .+.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666654 1 1224555666666666666666666666666554 23333333333333444555666665555444
Q ss_pred cCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 430 TGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD-------VVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 430 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
... ++...+. ++..+...++.++|...++...+.+ ...|..+...|...|++++|...++++.+
T Consensus 173 ~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 321 1222222 3334444444444444444444211 23333344444444444444444444443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=1e-11 Score=110.72 Aligned_cols=193 Identities=9% Similarity=-0.056 Sum_probs=122.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc
Q 043608 337 CNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 414 (579)
+..+...+...|++++|.+.|++. ..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence 344444455555555555555443 111244455556666666666666666666665542 22445555566666666
Q ss_pred CChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHH
Q 043608 415 ASLEMVTQLHCYITKTGLAF-DVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLF 490 (579)
Q Consensus 415 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 490 (579)
|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|...+
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666665522222 445566666677777777777777776552 34566777778888888888888888
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 491 TRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 491 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 199 DLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8887753 345567777778888888888888888888764
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=1.4e-11 Score=111.34 Aligned_cols=238 Identities=8% Similarity=-0.076 Sum_probs=149.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHH
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 283 (579)
.+......+...|++++|.+.|++..+.. +.+...+..+...+...|++++|
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~l~~~~~~~~~~~~A 56 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK----------------------------YNSPYIYNRRAVCYYELAKYDLA 56 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT----------------------------CCCSTTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHHHHhhHHHH
Confidence 44556677788888888888888887764 34555778888888888999999
Q ss_pred HHHHHHHHhCCCCCC--hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-
Q 043608 284 MSLFSEMRDRELLPD--GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL- 360 (579)
Q Consensus 284 ~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~- 360 (579)
.+.+++....+..|+ ...+..+...+...|++++|...++...+... .+..++..+...+...|++++|.+.|++.
T Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 57 QKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 998888887432222 12366677777788888888888888777652 35567777777777788888888877775
Q ss_pred CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC---hHHHHHHHHHHHHcC-CCCc
Q 043608 361 GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS---LEMVTQLHCYITKTG-LAFD 435 (579)
Q Consensus 361 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~ 435 (579)
...| +...+..+...+...+++++|...|++..+.. +.+...+..+...+...++ +++|...+++..+.. -.|+
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 2222 34455555523444457777777777776652 2234455555555555555 555665555554321 1111
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.. -.. -...|..+...|...|++++|.+.+++..+.
T Consensus 215 ~~-~~~------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 215 KY-KDE------------------------LIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp GG-HHH------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cc-hHH------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 10 000 0124455566666667777777777776664
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=3.5e-11 Score=108.69 Aligned_cols=224 Identities=12% Similarity=0.004 Sum_probs=122.7
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc----ccchhhHHHHHHHHHHcCCCCCchh
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG----RLTLYQGMQVHSYIIKMGFDSNVPV 336 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (579)
+.+..++..+...+...|++++|.+.|++..+. -+...+..+...+.. .+++++|...++...+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 345666777777788888888888888877763 233444555555555 666666666666666554 4444
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 337 CNAILTMYAK----CSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 337 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
+..+...|.. .+++++|++.|+..-...+...+..+...|.. .+++++|...|++..+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------------- 143 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------------- 143 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------------
Confidence 4555555555 55555555555443111244444444444444 44555555555544443
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHHHHHhhCCC-CChhhHHHHHHHHHh----
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSARKLFNFMEN-PDVVSWSSLILGYAQ---- 479 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~---- 479 (579)
+ +...+..+...|.. .+++++|...+++..+ .+...+..+...|..
T Consensus 144 ----------------------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 144 ----------------------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp ----------------------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred ----------------------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 3 23334444444444 4555555555554432 234445555555555
Q ss_pred cCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc----cCchHHHHHHHHHHHHh
Q 043608 480 FGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH----VGLVEEGLHLYRIMENE 531 (579)
Q Consensus 480 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 531 (579)
.+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++..+.
T Consensus 199 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 666666666666666543 14445555555555 66666666666666544
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=2.3e-11 Score=106.20 Aligned_cols=204 Identities=9% Similarity=-0.041 Sum_probs=142.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 334 VPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
...+..+...+...|++++|.+.++.. ..+.+...+..+...+...|++++|...++++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344555666666667777776666654 112245567777777777777777777777776653 33556677777777
Q ss_pred hcc-CChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHH
Q 043608 412 AKM-ASLEMVTQLHCYITKTGLAF-DVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 412 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 486 (579)
... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 777 88888888887777622222 356677777788888888888888877652 3466778888888889999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchh
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHC 541 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 541 (579)
...++++.+.....+...+..+...+...|+.+.|..+++.+.+. .|+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~ 218 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN---FPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHH
Confidence 999998887532145667777777788889999999998888754 4554443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=2.5e-12 Score=113.99 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI 447 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (579)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence 34444444444555555555555544431 22344444444455555555555555555444321 23444455555555
Q ss_pred HcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHH
Q 043608 448 KCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
..|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554431 234445555555556666666666666655532 22344555555566666666666666
Q ss_pred HHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 525 YRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
++++.+. .+.+...+..+..+|.+.|++++|...++++
T Consensus 182 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 182 FAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6665543 1223445555566666666666666666655
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=1.8e-12 Score=125.06 Aligned_cols=268 Identities=11% Similarity=0.013 Sum_probs=147.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-----HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 267 WNALIAGVASHSNANEAMSLFSEMRDRELLPDG-----LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 267 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
+..+...+...|++++|...|++..+. .|+. ..+..+...+...|++++|...++...+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 344555666677777777777766654 2321 234444445555555555555555443320
Q ss_pred HHHHhcCChHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCcHhHHHHHHHHHhccC
Q 043608 342 TMYAKCSVLCNALLVFKELGKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QI-KPDHITFNDVMGACAKMA 415 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~ 415 (579)
+..+.. .....+..+...|...|++++|...+++..+. +- +....++..+...+...|
T Consensus 117 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 117 ----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 000101 12234445555555555655555555554332 10 111234445555555566
Q ss_pred C-----------------hHHHHHHHHHHHHc----CC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC--
Q 043608 416 S-----------------LEMVTQLHCYITKT----GL-AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD-- 466 (579)
Q Consensus 416 ~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-- 466 (579)
+ +++|.+.+++..+. +. ......+..+...|...|++++|...+++..+ ++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 66666655554321 11 11223555666667777777777777666552 12
Q ss_pred --hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-C----ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--
Q 043608 467 --VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS-P----NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-- 537 (579)
Q Consensus 467 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 537 (579)
...+..+...|...|++++|...+++..+.... . ...++..+...+...|++++|...+++......-.++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 125666677777777777777777776543110 0 1346667777777778888887777776643111111
Q ss_pred --cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 538 --REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 538 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
...+..+..+|.+.|++++|.+.+++.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 235666777777788888887777765
No 55
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=6.5e-10 Score=111.54 Aligned_cols=459 Identities=9% Similarity=0.008 Sum_probs=249.9
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCC---hhhHHHhh
Q 043608 17 EALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGS---LEDARMGF 93 (579)
Q Consensus 17 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 93 (579)
+.+..|+..... .+.|..+|..++..+.+.++++.+..+|+.++..- +.....|...+..-.+.|. ++.+.++|
T Consensus 50 d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455555543 34566777777777777777777777777777664 5566677777776666666 77777777
Q ss_pred cCCCC-----CCeeehhHHhhhhhcCCCh--------hhHHHHHHHHHH-CCC-CCCc-ccHHHHHHHhcC---------
Q 043608 94 DKMPQ-----RNVVSWTAMIAGCSQNYQE--------NDAIKLYIQMLQ-SGV-MPGQ-FTFGSIIKACSG--------- 148 (579)
Q Consensus 94 ~~~~~-----~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~g~-~p~~-~~~~~li~~~~~--------- 148 (579)
++... |++..|...+....+.++. +...++|+.... .|. .|+. ..|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 76652 5555666655544333332 223355555443 243 3322 334333332211
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEM 228 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 228 (579)
.++.+.+..+|+..+......-..+|......-...+. ..+.++ +.- ...+++.|...+.++
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~---------------~~e--~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRH---------------IGE--LSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHH---------------HHH--HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHH---------------HHH--hhHHHHHHHHHHHHH
Confidence 12334455555555432111111122111100000000 000000 000 011233344444443
Q ss_pred Hhc--CCCC--CCh-HhHHHHHHHHHHHHHHHhhcCCCCC------hhhHHHHHHHHHcCC-------ChHHHHHHHHHH
Q 043608 229 LHH--GAYQ--PNE-FIFGSVFSACSNFARILFNEIDSPD------LASWNALIAGVASHS-------NANEAMSLFSEM 290 (579)
Q Consensus 229 ~~~--~~~~--p~~-~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m 290 (579)
... ++.. |.. .+.. ....+.++ ...|...+..--..+ ..+.+..+|++.
T Consensus 269 ~~~~~~l~r~~p~~~~~~~-------------~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~a 335 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQAT-------------ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA 335 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCC-------------TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhhccccccccch-------------hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH
Confidence 221 1100 000 0000 00000001 123444443322222 123455667777
Q ss_pred HhCCCCCChHHHHHHHHHhhcccchhhHH-HHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCC-------
Q 043608 291 RDRELLPDGLTVHSLLCACIGRLTLYQGM-QVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGK------- 362 (579)
Q Consensus 291 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 362 (579)
... .+-....|.....-+...|+.+.|. .+++...... +.+...+...+....+.|+++.|.++|+.+-.
T Consensus 336 L~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 336 AQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 654 2334556666666666778888886 8888888653 44566667777888888899999888887621
Q ss_pred -----CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc-cCChHHHHHHH
Q 043608 363 -----NAD------------SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK-MASLEMVTQLH 424 (579)
Q Consensus 363 -----~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~ 424 (579)
.|+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 132 235777777777788889999999988776111122233222222222 34588999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C----ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 043608 425 CYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P----DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGV 498 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 498 (579)
+...+. .+.++..+...++.....|+.+.|..+|+.... | ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-- 570 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-- 570 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888865 344566677788888888899999999998774 3 2356777777777889999999999998886
Q ss_pred CCChhHHHHHHHHhhc
Q 043608 499 SPNLVTLVGVLTACSH 514 (579)
Q Consensus 499 ~p~~~~~~~l~~~~~~ 514 (579)
.|+......++.-|.-
T Consensus 571 ~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 571 FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp STTCCHHHHHHHHTCB
T ss_pred CCCCcHHHHHHHHhcC
Confidence 4555566666666544
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=1.9e-12 Score=124.57 Aligned_cols=293 Identities=10% Similarity=0.021 Sum_probs=218.9
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHhhcccchhhHHHHHHHHHHc----CCC
Q 043608 261 SPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD-----GLTVHSLLCACIGRLTLYQGMQVHSYIIKM----GFD 331 (579)
Q Consensus 261 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 331 (579)
+.....+......+...|++++|...|++..+. .|+ ...+..+...+...|+++.|...++...+. +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 455666777888899999999999999999876 333 246777778889999999999999987654 211
Q ss_pred C-CchhHHHHHHHHHhcCChHHHHHHHHHc----CCCCC----hhhHHHHHHHHHhcCC--------------------H
Q 043608 332 S-NVPVCNAILTMYAKCSVLCNALLVFKEL----GKNAD----SVSWNSIIAACLQHNQ--------------------A 382 (579)
Q Consensus 332 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~--------------------~ 382 (579)
| ...++..+...+...|++++|...+++. +..++ ..++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1 2456777888999999999999988775 11112 3478888888999999 9
Q ss_pred HHHHHHHHHHHHC----CCCCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----hhHHHHHHHHHHHcCCH
Q 043608 383 EELFRLFSRMLAS----QIKPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLA-FD----VFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 383 ~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~ 452 (579)
++|...+++.... +..|. ..++..+...+...|++++|...+++..+.... ++ ...+..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999998876542 21222 346777888899999999999999987743111 11 34778889999999999
Q ss_pred HHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC----CCC-hhHHHHHHHHhhccCch
Q 043608 453 GSARKLFNFMEN-----PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGV----SPN-LVTLVGVLTACSHVGLV 518 (579)
Q Consensus 453 ~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~-~~~~~~l~~~~~~~g~~ 518 (579)
++|...+++..+ ++ ..++..+...|...|++++|...+++..+... .+. ..++..+...+...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 999999988763 22 45677888999999999999999998875311 111 45788889999999999
Q ss_pred HHHHHHHHHHHHhh---CCCC-CcchhHHHHHHHHhcCChh
Q 043608 519 EEGLHLYRIMENEY---GIIP-TREHCSCVVDLLARAGCVH 555 (579)
Q Consensus 519 ~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~ 555 (579)
++|...+++..+.. +..+ ...++..+...+...|+..
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999999876532 1111 2346677888888888763
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=6.2e-12 Score=111.43 Aligned_cols=196 Identities=10% Similarity=0.035 Sum_probs=129.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
....+..+...+...|++++|...|++. . .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3344555555666666666666666655 2 22245566677777777777777777777776653 3355666777777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHH
Q 043608 411 CAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEAL 487 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 487 (579)
+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+ .+...+..+...+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777888888888777776542 3566677777788888888888888877652 45667778888888889999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 488 KLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 488 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9998888753 335668888888888999999999999988864
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=5.3e-12 Score=121.52 Aligned_cols=268 Identities=10% Similarity=-0.001 Sum_probs=205.0
Q ss_pred CChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCC---chhHHHHHHHHHhcCChHHHHHHHHHc-------CCCC-C
Q 043608 297 PDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSN---VPVCNAILTMYAKCSVLCNALLVFKEL-------GKNA-D 365 (579)
Q Consensus 297 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~ 365 (579)
+....+......+...|++++|...++.+.+.+.... ..++..+...+...|++++|...++.. +..| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444556666788899999999999999998853321 356778889999999999999998764 2222 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-cHhHHHHHHHHHhccCC--------------------hHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQ----IKP-DHITFNDVMGACAKMAS--------------------LEMV 420 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~~~--------------------~~~a 420 (579)
...+..+...+...|++++|...+++..+.. ..+ ...++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 4568888899999999999999999876531 111 13467778888899999 9999
Q ss_pred HHHHHHHHHc----CCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCCcHHH
Q 043608 421 TQLHCYITKT----GLA-FDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VVSWSSLILGYAQFGCGDEA 486 (579)
Q Consensus 421 ~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 486 (579)
...++...+. +.. ....++..+...|...|++++|...+++..+ ++ ...+..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998876632 211 1245678888999999999999999988763 22 23778888999999999999
Q ss_pred HHHHHHHHhCC----CCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----cchhHHHHHHHHhcCChhHH
Q 043608 487 LKLFTRMRSLG----VSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT----REHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 487 ~~~~~~m~~~~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 557 (579)
...+++..+.. ..+. ..++..+...+...|++++|...+++..+...-.++ ...+..+..+|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987531 1111 457888899999999999999999998764221222 44778899999999999999
Q ss_pred HHHHHhh
Q 043608 558 EDFINQM 564 (579)
Q Consensus 558 ~~~~~~~ 564 (579)
.+.+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=1.7e-11 Score=115.12 Aligned_cols=228 Identities=10% Similarity=0.038 Sum_probs=154.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 335 PVCNAILTMYAKCSVLCNALLVFKEL-GKN-ADSVSWNSIIAACLQHNQ-AEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
..+..+...+.+.|++++|++.++.. ... -+...|+.+...+...|+ +++|+..|++..... +-+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 34555556666667777777777664 222 255667777777777775 777777777777653 23456677777777
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh-cCCcHHH-
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQ-FGCGDEA- 486 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~~~a- 486 (579)
...|++++|...++++.+.... +...|..+..++.+.|++++|...++++.+ .+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 7777777777777777766532 566777777777777888888887777763 345677777777777 5554666
Q ss_pred ----HHHHHHHHhCCCCC-ChhHHHHHHHHhhccC--chHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC-------
Q 043608 487 ----LKLFTRMRSLGVSP-NLVTLVGVLTACSHVG--LVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG------- 552 (579)
Q Consensus 487 ----~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 552 (579)
+..+++.++. .| +...|..+...+...| ++++|.+.+.++ + .-+.+...+..++.+|.+.|
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 4777777764 34 4557777777777777 578888877776 2 33344556777788887764
Q ss_pred --ChhHHHHHHHhh--cCCCC
Q 043608 553 --CVHEAEDFINQM--ACDAD 569 (579)
Q Consensus 553 --~~~~A~~~~~~~--~~~~~ 569 (579)
.+++|.++++++ ...|+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 247888888887 44554
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=3.9e-12 Score=118.86 Aligned_cols=269 Identities=10% Similarity=0.021 Sum_probs=162.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-----HHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHH
Q 043608 266 SWNALIAGVASHSNANEAMSLFSEMRDRELLPDG-----LTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAI 340 (579)
Q Consensus 266 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (579)
.+......+...|++++|...|+++.+. .|+. ..+..+...+...|+++.|...++...+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 73 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------- 73 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----------
Confidence 3444455666677777777777776654 2321 334444444555555555555554443220
Q ss_pred HHHHHhcCChHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc----HhHHHHHHHHHhcc
Q 043608 341 LTMYAKCSVLCNALLVFKELGKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQI-KPD----HITFNDVMGACAKM 414 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~ 414 (579)
+..+..| ....+..+...+...|++++|...+++..+... .++ ..++..+...+...
T Consensus 74 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 74 -----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp -----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 0001111 133455555566666666666666665443210 011 22455555666666
Q ss_pred CC--------------------hHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----
Q 043608 415 AS--------------------LEMVTQLHCYITKT----GLA-FDVFVMNGLMDIYIKCGSLGSARKLFNFMEN----- 464 (579)
Q Consensus 415 ~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 464 (579)
|+ +++|...+++..+. +.. .....+..+...+...|++++|...+++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 66 66666666654421 111 1234566677778888888888888777652
Q ss_pred CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-CC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC
Q 043608 465 PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS-PN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGII 535 (579)
Q Consensus 465 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 535 (579)
++ ...+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 22 236777788888899999999998887643111 11 4467788888999999999999998876542111
Q ss_pred CC----cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 536 PT----REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 536 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+ ..++..+..+|.+.|++++|...+++.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 336778889999999999999999887
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=2.3e-09 Score=107.64 Aligned_cols=444 Identities=10% Similarity=-0.003 Sum_probs=259.2
Q ss_pred hhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCC---hhhHHHHH
Q 043608 51 LQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQ---ENDAIKLY 124 (579)
Q Consensus 51 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~a~~~~ 124 (579)
..+....++..+..+ +.|...|..++..+.+.+.++.|..+|+++.. .+...|...+..-.+.++ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 455566677777777 67999999999999989999999999988874 345567777877777888 99999999
Q ss_pred HHHHHCC-CCCCcccHHHHHHHhcCCCcc--------hhHHHHHHHHHH-hcc-CCC-hhHHHHHHHHHhc---------
Q 043608 125 IQMLQSG-VMPGQFTFGSIIKACSGLGSV--------CLGRQLHAHVIK-SEH-GSH-LIAQNALIAMYTK--------- 183 (579)
Q Consensus 125 ~~~~~~g-~~p~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~--------- 183 (579)
++..... ..|+...|..-+.-..+.++. +.+.++|+..+. .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998863 137776666655443333322 334466666554 344 333 3455555543322
Q ss_pred CCCHHHHHHHhcccCCC---c-HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcC
Q 043608 184 FDRILDARNVFSGIARK---D-VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEI 259 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 259 (579)
.++++.+..+|++...- + ...|......--.. +...+.+++.+.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~e~------------------------------- 254 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV-NQLTARRHIGEL------------------------------- 254 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH-CTTTHHHHHHHH-------------------------------
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-CcchHHHHHHHh-------------------------------
Confidence 22344455555544321 0 01111111000000 000011111110
Q ss_pred CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC--CC----C-----------C--C---h---HHHHHHHHHhhccc-
Q 043608 260 DSPDLASWNALIAGVASHSNANEAMSLFSEMRDR--EL----L-----------P--D---G---LTVHSLLCACIGRL- 313 (579)
Q Consensus 260 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~----~-----------p--~---~---~~~~~ll~~~~~~~- 313 (579)
..+++.|...+.++... ++ + | + . ..|...+.---..+
T Consensus 255 -----------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 255 -----------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 01122233333222110 11 0 1 0 0 11222221111111
Q ss_pred ------chhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH-HHHHHc--CCCCChhhHHHHHHHHHhcCCHHH
Q 043608 314 ------TLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNAL-LVFKEL--GKNADSVSWNSIIAACLQHNQAEE 384 (579)
Q Consensus 314 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 384 (579)
..+.+..+|+..+... +....+|-..+..+...|+.++|. ++|+.. ..+.+...|-..+...-+.|+++.
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~ 396 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPE 396 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 1233456677776653 446777888888888888888886 888775 223355566777777888889999
Q ss_pred HHHHHHHHHHCCC---------CCc------------HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 043608 385 LFRLFSRMLASQI---------KPD------------HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM 443 (579)
Q Consensus 385 a~~~~~~m~~~~~---------~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 443 (579)
|.++|+++..... .|+ ...|...+....+.|+.+.|..+|....+.........|....
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9999988876410 131 2346666666677788888888888887651112233343333
Q ss_pred HHHHHc-CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhccCc
Q 043608 444 DIYIKC-GSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP--NLVTLVGVLTACSHVGL 517 (579)
Q Consensus 444 ~~~~~~-~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~ 517 (579)
..-.+. ++.+.|..+|+...+ .+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 333343 448888888887774 355566677777777888888888888888764322 23467777777778888
Q ss_pred hHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 518 VEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 518 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
.+.+..+.+++... .|+......+++-|
T Consensus 557 ~~~~~~v~~R~~~~---~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 557 LNSVRTLEKRFFEK---FPEVNKLEEFTNKY 584 (679)
T ss_dssp SHHHHHHHHHHHHH---STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---CCCCcHHHHHHHHh
Confidence 88888888888865 45555555555544
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=5.2e-12 Score=121.86 Aligned_cols=269 Identities=12% Similarity=0.002 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCCh----hhHHHHHHHHHcCC
Q 043608 203 TSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDL----ASWNALIAGVASHS 278 (579)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~ 278 (579)
..+..+...+...|++++|.+.|++..+.+ +.+. ..|..+...+...|
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~lg~~~~~~g 100 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG----------------------------TEDLRTLSAIYSQLGNAYFYLG 100 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------CSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----------------------------ccChhHHHHHHHHHHHHHHHCC
Confidence 345566778889999999999999998874 2232 46778888899999
Q ss_pred ChHHHHHHHHHHHhC----CCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcC-----CCCCchhHHHHHHHHHhcC
Q 043608 279 NANEAMSLFSEMRDR----ELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG-----FDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 279 ~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 348 (579)
++++|...+++..+. +..| ....+..+...+...|++++|...++...+.. ......++..+...|...|
T Consensus 101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 999999999887643 1112 23345555566667777777777766655431 0111224444445555555
Q ss_pred C-----------------hHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHH
Q 043608 349 V-----------------LCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFND 406 (579)
Q Consensus 349 ~-----------------~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ 406 (579)
+ +++|.+.++ +..+. +..+ ...++..
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~--------------------------------~al~~~~~~~~~~~~~~~~~~ 228 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQ--------------------------------ENLKLMRDLGDRGAQGRACGN 228 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHTCHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHH--------------------------------HHHHHHHHcCCHHHHHHHHHH
Confidence 5 444444443 32211 1011 1223444
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCC-C----chhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----C----ChhhHHH
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGLA-F----DVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----P----DVVSWSS 472 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~ 472 (579)
+...+...|++++|...+++..+.... + ....+..+..+|...|++++|...+++..+ . ....+..
T Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444555555555555444321100 0 112445555556666666666666555442 1 1345566
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCC----CC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGV----SP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...|...|++++|...+++..+... .+ ...++..+...|...|++++|...+++..+.
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 67777777777777777777654210 11 1336677777888888888888888887754
No 63
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=1.8e-10 Score=108.06 Aligned_cols=215 Identities=11% Similarity=0.071 Sum_probs=148.1
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCC-
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSN- 279 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~- 279 (579)
+...|..+...+...|++++|++.+++..+.. +.+...|+.+..++...|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~----------------------------P~~~~a~~~~g~~l~~~g~d 147 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN----------------------------AANYTVWHFRRVLLKSLQKD 147 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------------------ccCHHHHHHHHHHHHHcccC
Confidence 45678888888999999999999999998875 5677888999999999996
Q ss_pred hHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 043608 280 ANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFK 358 (579)
Q Consensus 280 ~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (579)
+++|+..|++.... .| +...|..+..++...|++++|+..++.+++.. +.+...|..+..++.+.|++++|+..|+
T Consensus 148 ~~eAl~~~~~al~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 148 LHEEMNYITAIIEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999998875 34 45566777777777888888888888888775 3366677777777777777777777777
Q ss_pred Hc-C-CCCChhhHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCcHhHHHHHHHHHhccC--ChHHHHHHHHHHH
Q 043608 359 EL-G-KNADSVSWNSIIAACLQ-HNQAEEL-----FRLFSRMLASQIKPDHITFNDVMGACAKMA--SLEMVTQLHCYIT 428 (579)
Q Consensus 359 ~~-~-~~~~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 428 (579)
++ . .+-+...|+.+..++.. .|..++| +..|++..... +-+...|..+...+...| ++++|.+.+..+
T Consensus 225 ~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~- 302 (382)
T 2h6f_A 225 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL- 302 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-
Confidence 65 1 12255667777777777 4444555 36666665542 223445555555566555 466666666555
Q ss_pred HcCCCCchhHHHHHHHHHHHc
Q 043608 429 KTGLAFDVFVMNGLMDIYIKC 449 (579)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~~~~ 449 (579)
+. .+.+...+..+..+|.+.
T Consensus 303 ~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 303 QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp TT-TCCCHHHHHHHHHHHHHH
T ss_pred cc-CCCCHHHHHHHHHHHHHH
Confidence 21 122344555555555554
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=1.8e-11 Score=114.28 Aligned_cols=275 Identities=11% Similarity=0.013 Sum_probs=162.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHcCCC
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPD----LASWNALIAGVASHSN 279 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~ 279 (579)
.+......+...|++++|...|++..+.. +.+ ...+..+...+...|+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~l~~~~~~~g~ 58 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG----------------------------TEDLKTLSAIYSQLGNAYFYLHD 58 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------CSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC----------------------------cccHHHHHHHHHHHHHHHHHcCC
Confidence 34455677888999999999999998874 222 3567788889999999
Q ss_pred hHHHHHHHHHHHhC----CCCC-ChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCC-CC----chhHHHHHHHHHhcCC
Q 043608 280 ANEAMSLFSEMRDR----ELLP-DGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFD-SN----VPVCNAILTMYAKCSV 349 (579)
Q Consensus 280 ~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~ 349 (579)
+++|.+.+++.... +..| ....+..+...+...|++++|...++...+.... ++ ..++..+...+...|+
T Consensus 59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 99999999886542 1111 1334455555566666666666666655443111 01 1133344444444444
Q ss_pred -------------hHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHHHHHHH
Q 043608 350 -------------LCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFNDVMGAC 411 (579)
Q Consensus 350 -------------~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~ 411 (579)
.+++.+. +++|...+++.... +..| ....+..+...+
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~-------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 193 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNA-------------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTH 193 (338)
T ss_dssp TSSSSSCC----CCHHHHHH-------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhHHHH-------------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0000000 44444444433221 1111 123444555555
Q ss_pred hccCChHHHHHHHHHHHHcC----C-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHH
Q 043608 412 AKMASLEMVTQLHCYITKTG----L-AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VVSWSSLILGY 477 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~ 477 (579)
...|++++|...+++..+.. . ......+..+...+...|++++|...+++..+ ++ ...+..+...|
T Consensus 194 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (338)
T 3ro2_A 194 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 56666666666665554221 0 01123556666677777777777777766542 11 34566677788
Q ss_pred HhcCCcHHHHHHHHHHHhCC----CCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 478 AQFGCGDEALKLFTRMRSLG----VSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
...|++++|...+++..+.. -.+ ...++..+...+...|++++|...+++..+.
T Consensus 274 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888888888888776431 111 1346777888888899999999998888753
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=7.4e-11 Score=112.39 Aligned_cols=233 Identities=9% Similarity=-0.044 Sum_probs=125.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCC-CCC----hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDREL-LPD----GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMY 344 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (579)
....+...|++++|...+++....-. .++ ..++..+...+...|+++.|...+....+.....+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------- 179 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------- 179 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT---------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc---------
Confidence 45667788999999999988875411 122 2344555555566666666666665554431110000
Q ss_pred HhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHHHHHHHhccCChHH
Q 043608 345 AKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFNDVMGACAKMASLEM 419 (579)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~ 419 (579)
.+....+++.+...|...|++++|...+++..+. +..+ ...++..+...+...|++++
T Consensus 180 -----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 180 -----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 0001223444455555555555555555544322 1111 11244445555555566666
Q ss_pred HHHHHHHHHHc----CC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CCh---hhHHHHHHHHHhcCC---c
Q 043608 420 VTQLHCYITKT----GL-AFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDV---VSWSSLILGYAQFGC---G 483 (579)
Q Consensus 420 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~---~~~~~l~~~~~~~~~---~ 483 (579)
|...+++..+. +. +....++..+..+|.+.|++++|...+++..+ ++. ..+..+...|...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 65555555431 22 22344555566666666666666666655542 121 123455666667777 5
Q ss_pred HHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 484 DEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++|+.++++. +..|+ ...+..+...|...|++++|...+++..+.
T Consensus 323 ~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 323 QGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666554 22333 335667777788888888888888877654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=4.6e-11 Score=113.87 Aligned_cols=222 Identities=7% Similarity=-0.127 Sum_probs=163.7
Q ss_pred HHHHHHhcCChHHHHHHHHHc-CC---CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-cHhHHH
Q 043608 340 ILTMYAKCSVLCNALLVFKEL-GK---NA----DSVSWNSIIAACLQHNQAEELFRLFSRMLASQ--I---KP-DHITFN 405 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~-~~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~---~p-~~~~~~ 405 (579)
....+...|++++|...|+.. .. .+ ...++..+...+...|++++|...+++..+.. . .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556677777777777664 11 12 23467888888889999999999888876531 1 11 235778
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCC-C----chhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYITKTGLA-F----DVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VVSWS 471 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~ 471 (579)
.+...+...|++++|...+++..+.... + ...++..+..+|...|++++|...+++..+ .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988743211 1 124788899999999999999999988764 33 34577
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCC---CC-ChhHHHHHHHHhhccCc---hHHHHHHHHHHHHhhCCCCCcchhHHH
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGV---SP-NLVTLVGVLTACSHVGL---VEEGLHLYRIMENEYGIIPTREHCSCV 544 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l 544 (579)
.+...|.+.|++++|...+++..+... .| ....+..+...+...|+ +++|..++++.. ..+.....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 888999999999999999999875311 12 12346778888999999 777777777652 223334577889
Q ss_pred HHHHHhcCChhHHHHHHHhh
Q 043608 545 VDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~ 564 (579)
...|...|++++|...+++.
T Consensus 346 a~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999887
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=1e-10 Score=98.46 Aligned_cols=169 Identities=8% Similarity=0.000 Sum_probs=86.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
++..|..+...+...|++++|.+.|++..+.. +-+...+..+...+...|++++|...+........
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~------------ 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------------ 70 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------------
Confidence 34455566666666666666666666655542 22344444555555555555555555555444332
Q ss_pred HHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHH
Q 043608 445 IYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
.+...+..+...+...++++.|...+++..+.. +.+...+..+...+...|++++|++.
T Consensus 71 --------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~ 129 (184)
T 3vtx_A 71 --------------------TSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEA 129 (184)
T ss_dssp --------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHH
Confidence 223334444444555555555555555555431 22344555555555555666666666
Q ss_pred HHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 525 YRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
|++..+. -+.+...+..+..+|.+.|++++|.+.+++. ...|+
T Consensus 130 ~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 130 YEKTISI--KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHh--cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 5555543 1223344555555566666666666665554 33444
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=3.6e-10 Score=103.82 Aligned_cols=212 Identities=10% Similarity=0.010 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHcCCCCCchhHHHHHHHHHh-------cCCh-------HHHHHHHHHc-C-CCC-ChhhHHHHHHHHHh
Q 043608 316 YQGMQVHSYIIKMGFDSNVPVCNAILTMYAK-------CSVL-------CNALLVFKEL-G-KNA-DSVSWNSIIAACLQ 378 (579)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~-~-~~~-~~~~~~~l~~~~~~ 378 (579)
+.|..+|+.+++.. +.++.+|..++..+.. .|++ ++|..+|++. . ..| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887764 4466777777776653 4775 7888888875 3 344 34578888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcH-h-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH-HcCCHHHH
Q 043608 379 HNQAEELFRLFSRMLASQIKPDH-I-TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI-KCGSLGSA 455 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 455 (579)
.|++++|..+|++..+. .|+. . .|..+...+.+.|++++|..+|++..+... .+...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888874 4442 2 677777778888888888888888876543 23444443333322 25888888
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC-CCCC--hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 456 RKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLG-VSPN--LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 456 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
..+|+...+ .+...|..++..+.+.|++++|..+|++..+.. ++|+ ...|..++....+.|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887763 356677777788888888888888888888753 3443 4467777777778888888888888887
Q ss_pred Hh
Q 043608 530 NE 531 (579)
Q Consensus 530 ~~ 531 (579)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=6.3e-10 Score=93.56 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=114.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGA 410 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 410 (579)
+..+|..+...|.+.|++++|++.|++. . .+-+..++..+...+.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 6778999999999999999999999986 2 22267789999999999999999999999988763 3345666667777
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHH
Q 043608 411 CAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEAL 487 (579)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 487 (579)
+...++++.+...+....+... .+...+..+..+|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 7888888888888888776542 2445555555666666666666655555442 23344555555555555555555
Q ss_pred HHHHHHHh
Q 043608 488 KLFTRMRS 495 (579)
Q Consensus 488 ~~~~~m~~ 495 (579)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=1.5e-10 Score=113.10 Aligned_cols=190 Identities=9% Similarity=-0.026 Sum_probs=120.0
Q ss_pred CchhHHHHHHHHHhcCCh-HHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHH
Q 043608 333 NVPVCNAILTMYAKCSVL-CNALLVFKEL-G-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMG 409 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 409 (579)
+...+..+...+...|++ ++|++.|++. . .+.+...|..+...|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 444555555555556666 6666655554 1 1114556677777777777777777777777665 355566666667
Q ss_pred HHhcc---------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc--------CCHHHHHHHHhhCCC--C----C
Q 043608 410 ACAKM---------ASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC--------GSLGSARKLFNFMEN--P----D 466 (579)
Q Consensus 410 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~--~----~ 466 (579)
.+... |++++|.+.+++..+... .+...+..+..+|... |++++|...|++..+ | +
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 77776 777777777777766542 2456666666666666 667777777666652 3 4
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHH
Q 043608 467 VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566667777777777777777777776642 2234456666666777777777665443
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=8.1e-11 Score=114.95 Aligned_cols=207 Identities=12% Similarity=0.010 Sum_probs=175.0
Q ss_pred hHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHH
Q 043608 350 LCNALLVFKEL-GKN-ADSVSWNSIIAACLQHNQA-EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCY 426 (579)
Q Consensus 350 ~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 426 (579)
++++...+++. ... .+...+..+...+...|++ ++|...|++..+.. +.+...+..+...+...|++++|.+.+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566666654 222 3677888999999999999 99999999998863 33577899999999999999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHHc---------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc--------CCcHHH
Q 043608 427 ITKTGLAFDVFVMNGLMDIYIKC---------GSLGSARKLFNFMEN---PDVVSWSSLILGYAQF--------GCGDEA 486 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~--------~~~~~a 486 (579)
..+.. |+...+..+..+|... |++++|...+++..+ .+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99765 5578889999999999 999999999998873 4577889999999988 999999
Q ss_pred HHHHHHHHhCCCCC----ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHHHH
Q 043608 487 LKLFTRMRSLGVSP----NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 487 ~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
+..|++..+. .| +...|..+..+|...|++++|...|++..+. .| +...+..+..++...|++++|.+.+
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999985 45 6778999999999999999999999999865 34 4457888899999999999999877
Q ss_pred Hhh
Q 043608 562 NQM 564 (579)
Q Consensus 562 ~~~ 564 (579)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 665
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=6.2e-09 Score=95.56 Aligned_cols=213 Identities=10% Similarity=0.037 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc-------CCCh-------HHHH
Q 043608 219 LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVAS-------HSNA-------NEAM 284 (579)
Q Consensus 219 ~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~ 284 (579)
++|...|++..... +.+...|..++..+.. .|++ ++|.
T Consensus 33 ~~a~~~~~~al~~~----------------------------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----------------------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----------------------------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 67778888887653 4567777777766653 4664 6677
Q ss_pred HHHHHHHhCCCCCC-hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCC
Q 043608 285 SLFSEMRDRELLPD-GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKN 363 (579)
Q Consensus 285 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (579)
.+|++.... +.|+ ...+..+...+...|++++|..+|+.+++. .
T Consensus 85 ~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------------------------~ 129 (308)
T 2ond_A 85 NIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI----------------------------------E 129 (308)
T ss_dssp HHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----------------------------------S
T ss_pred HHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------------------c
Confidence 777666652 1332 223444444444444555555555444442 2
Q ss_pred CC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH-hccCChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 364 AD-SV-SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC-AKMASLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 364 ~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..+|+...+... .++..+.
T Consensus 130 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 207 (308)
T 2ond_A 130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVL 207 (308)
T ss_dssp SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 22 21 45555555555555555555555555542 12222222222211 124566666666666554432 2455566
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC-----C--ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMEN-----P--DVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.++..+.+.|+.++|..+|++... | ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665543 1 2345666666666777777777777777664
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=7.9e-11 Score=108.62 Aligned_cols=230 Identities=14% Similarity=0.056 Sum_probs=154.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHcC---------CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKELG---------KN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS------Q 396 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 396 (579)
...++..+...+...|++++|...+++.- .. .....+..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34567778888889999999999888761 12 23456788888889999999999999988764 2
Q ss_pred CCC-cHhHHHHHHHHHhccCChHHHHHHHHHHHHc------CCC-CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----
Q 043608 397 IKP-DHITFNDVMGACAKMASLEMVTQLHCYITKT------GLA-FDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---- 464 (579)
Q Consensus 397 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 464 (579)
..| ...++..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|...++++.+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 3556777888888999999999999887754 222 2345677788888899999999888887652
Q ss_pred ---C-C---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC-------CCCCChh-------HHHHHHHHhhccCchHHHHH
Q 043608 465 ---P-D---VVSWSSLILGYAQFGCGDEALKLFTRMRSL-------GVSPNLV-------TLVGVLTACSHVGLVEEGLH 523 (579)
Q Consensus 465 ---~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-------~~~~l~~~~~~~g~~~~a~~ 523 (579)
+ + ...+..+...|...|++++|.+.++++.+. ...+... .+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 2 345677788888999999999999888753 1122211 22222233344555666666
Q ss_pred HHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 524 LYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.++..... .+....++..+..+|.+.|++++|.+++++.
T Consensus 266 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 266 WYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666532 2334567888999999999999999999886
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=8.6e-09 Score=97.69 Aligned_cols=263 Identities=8% Similarity=-0.082 Sum_probs=188.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCChH----HHHHHHHHhhcccchhhHHHHHHHHHHcCCCC-Cc----hhHHH
Q 043608 269 ALIAGVASHSNANEAMSLFSEMRDRELLPDGL----TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDS-NV----PVCNA 339 (579)
Q Consensus 269 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 339 (579)
.....+...|++++|...+++.....-..+.. .+..+...+...|+++.|...++...+..... +. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34456678999999999999987754222222 34455567778899999999999887642211 11 23556
Q ss_pred HHHHHHhcCChHHHHHHHHHc-------CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--cHhHHH
Q 043608 340 ILTMYAKCSVLCNALLVFKEL-------GKN--A-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIK--P--DHITFN 405 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~-------~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~ 405 (579)
+...+...|++++|...+++. +.. | ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888999999999998765 221 2 2345667888899999999999999998764321 1 234567
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCch-hHHH-----HHHHHHHHcCCHHHHHHHHhhCCCCCh-------hhHHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYITKTGLAFDV-FVMN-----GLMDIYIKCGSLGSARKLFNFMENPDV-------VSWSS 472 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~ 472 (579)
.+...+...|++++|...++........++. ..+. ..+..+...|++++|...++....++. ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7778889999999999999988754222211 1111 233457799999999999999875322 24567
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhC----CCCCCh-hHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSL----GVSPNL-VTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778899999999999999987643 222222 26667778889999999999999988753
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=7.2e-11 Score=108.90 Aligned_cols=239 Identities=13% Similarity=0.048 Sum_probs=123.1
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHHHHhC-------CCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchh
Q 043608 264 LASWNALIAGVASHSNANEAMSLFSEMRDR-------ELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPV 336 (579)
Q Consensus 264 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (579)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++.+.+..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 456777778888888888888888887652 112223344455555556666666666665554431
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHc--CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-cHhHHHH
Q 043608 337 CNAILTMYAKCSVLCNALLVFKEL--GKN-ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS------QIKP-DHITFND 406 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ 406 (579)
+.. +.. .....+..+...+...|++++|...+++..+. +..| ....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 000 001 12233444555555555555555555554432 1112 2234445
Q ss_pred HHHHHhccCChHHHHHHHHHHHHc------CCCC-chhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----------CC--
Q 043608 407 VMGACAKMASLEMVTQLHCYITKT------GLAF-DVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----------PD-- 466 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~-- 466 (579)
+...+...|++++|.+.++++.+. +..| ...++..+..+|...|++++|...++++.+ +.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555555666666666666555532 1111 233455566666666666666666655542 11
Q ss_pred -----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 467 -----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 467 -----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
...+..+...+...+.+.++...+++..... +.+..++..+..+|...|++++|...+++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333445566667777777766531 223557888888899999999999998887753
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=7.3e-10 Score=105.22 Aligned_cols=300 Identities=10% Similarity=-0.024 Sum_probs=203.0
Q ss_pred CChhhHHHHHHHH--HcCCChHHHHHHHHHHHhC--CCCCC--hHHHHHHHHH--hhcccchhhHH---------HHHHH
Q 043608 262 PDLASWNALIAGV--ASHSNANEAMSLFSEMRDR--ELLPD--GLTVHSLLCA--CIGRLTLYQGM---------QVHSY 324 (579)
Q Consensus 262 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~--~~~~~~~~~a~---------~~~~~ 324 (579)
|+...-+.+-..| ...+++++|..+++++... .+..| ...|..++.. ....+...... ..++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444444455555 7899999999999987653 22223 3333443332 11122333333 56665
Q ss_pred HHHcCCCCCc----hhHHHHHHHHHhcCChHHHHHHHHHc----CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 325 IIKMGFDSNV----PVCNAILTMYAKCSVLCNALLVFKEL----GKNAD----SVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 325 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
+.....+.+. ..+......+...|++++|...|+.. ...++ ..++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432211111 11223345567899999999999876 11122 346888899999999999999999987
Q ss_pred HHCC----C-CC-cHhHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHHcCCHHHHHHHHhh
Q 043608 393 LASQ----I-KP-DHITFNDVMGACAKMASLEMVTQLHCYITKT----GLA-FDVFVMNGLMDIYIKCGSLGSARKLFNF 461 (579)
Q Consensus 393 ~~~~----~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 461 (579)
.+.. . .+ ...++..+...+...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6531 1 11 2456778888999999999999999887743 211 1245678889999999999999999988
Q ss_pred CCC-----CC---hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC---CC-hhHHHHHHHHhhccCc---hHHHHHHHH
Q 043608 462 MEN-----PD---VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS---PN-LVTLVGVLTACSHVGL---VEEGLHLYR 526 (579)
Q Consensus 462 ~~~-----~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~-~~~~~~l~~~~~~~g~---~~~a~~~~~ 526 (579)
..+ .+ ..++..+...|.+.|++++|...+++..+.... |. ...+..+...+...|+ +.+|..+++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 764 22 456777888999999999999999998874222 22 3356666677778888 777777777
Q ss_pred HHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 527 IMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+.. ..+.....+..+...|...|++++|...+++.
T Consensus 328 ~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 328 KKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 532 22223446778999999999999999999887
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.19 E-value=4.6e-09 Score=99.57 Aligned_cols=258 Identities=10% Similarity=0.040 Sum_probs=186.3
Q ss_pred HHhhcccchhhHHHHHHHHHHcCCCCCch----hHHHHHHHHHhcCChHHHHHHHHHc----CCCCCh----hhHHHHHH
Q 043608 307 CACIGRLTLYQGMQVHSYIIKMGFDSNVP----VCNAILTMYAKCSVLCNALLVFKEL----GKNADS----VSWNSIIA 374 (579)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~----~~~~~l~~ 374 (579)
..+...|+++.|...++...+.....+.. ++..+...+...|++++|...+++. ...++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34567899999999999988865333322 4566677888899999999998875 111122 23567778
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC--Cc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC----chhHHHHHH
Q 043608 375 ACLQHNQAEELFRLFSRMLAS----QIK--PD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAF----DVFVMNGLM 443 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 443 (579)
.+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++..+..... ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 889999999999999987653 222 32 3455667788899999999999999988543321 235677788
Q ss_pred HHHHHcCCHHHHHHHHhhCC----CCCh-hhHHH-----HHHHHHhcCCcHHHHHHHHHHHhCCCCCC---hhHHHHHHH
Q 043608 444 DIYIKCGSLGSARKLFNFME----NPDV-VSWSS-----LILGYAQFGCGDEALKLFTRMRSLGVSPN---LVTLVGVLT 510 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~-----l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~ 510 (579)
..+...|++++|...+++.. .++. ..+.. .+..+...|++++|...+++.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 88999999999999998764 2221 22222 23447799999999999999876432211 224667788
Q ss_pred HhhccCchHHHHHHHHHHHHhh---CCCCCc-chhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 511 ACSHVGLVEEGLHLYRIMENEY---GIIPTR-EHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+...|++++|...+++..... +..++. ..+..+..++...|+.++|...+++.
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8999999999999999886531 211222 25667788899999999999998876
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=2.5e-09 Score=101.52 Aligned_cols=230 Identities=11% Similarity=-0.022 Sum_probs=119.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCC-CCC----hHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDREL-LPD----GLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMY 344 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (579)
....+...|++++|...|++...... .++ ...+..+...+...|+++.|...++...+....
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~------------- 173 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN------------- 173 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-------------
Confidence 44556778889999988888765411 122 223444445555555665555555554432100
Q ss_pred HhcCChHHHHHHHHHcCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHHHHHHHhccCCh
Q 043608 345 AKCSVLCNALLVFKELGK-NA-DSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFNDVMGACAKMASL 417 (579)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~ 417 (579)
.+. .+ ...+++.+...|...|++++|...+++..+. +..+ ...++..+...+...|++
T Consensus 174 ---------------~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 174 ---------------HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp ---------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred ---------------CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 000 00 1223445555555555555555555544331 1111 123444555555566666
Q ss_pred HHHHHHHHHHHH----cCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC---hhhHHHHHHHHHhcCC---
Q 043608 418 EMVTQLHCYITK----TGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD---VVSWSSLILGYAQFGC--- 482 (579)
Q Consensus 418 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~---~~~~~~l~~~~~~~~~--- 482 (579)
++|...+++..+ .+.+....++..+..+|.+.|++++|...+++..+ ++ ...+..+...|...++
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 666666655543 12122245555666666666666666666655431 11 1223344444555566
Q ss_pred cHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+++|+..+++ .+..|+ ...+..+...|...|++++|...+++...
T Consensus 319 ~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666666655 222232 33556677777788888888887777654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=3.8e-10 Score=94.95 Aligned_cols=161 Identities=14% Similarity=0.045 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYI 447 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 447 (579)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~---------- 77 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVK---------- 77 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH----------
Confidence 45556666666677777777766655432 2344455555555666666666666666555442 11333
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHH
Q 043608 448 KCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRI 527 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 527 (579)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 78 ---------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 78 ---------------------VATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp ---------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 34444455555555555555555555432 22344555555555555666666666555
Q ss_pred HHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 528 MENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+.+. .+.+...+..+..++...|++++|.+.+++.
T Consensus 136 ~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 136 ALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhc--CccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5543 1223345555555566666666666665554
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=2e-09 Score=90.49 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=118.8
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHcC-C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHH
Q 043608 334 VPVCNAILTMYAKCSVLCNALLVFKELG-K-NADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGAC 411 (579)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 411 (579)
...+..+...+...|++++|.+.++.+- . +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3456777888999999999999999872 2 2366788899999999999999999999998763 44567777888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHH
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFT 491 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 491 (579)
...|++++|.+.++.+.+... .+.. .+..+...+...|++++|.+.++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~-------------------------------~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFN-------------------------------VRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHH-------------------------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999888888776532 2333 34444555556666666666666
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 492 RMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 492 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 135 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 135 IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666542 234556666667777777777777777766643
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=8.8e-09 Score=91.46 Aligned_cols=239 Identities=9% Similarity=-0.042 Sum_probs=123.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 271 IAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
++-..-.|++..++.-...+.. ..+ ......+.+++...|+++... ...|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~~-~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VTD-NTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CCC-HHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cch-HHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc--
Confidence 3445557888888873332211 112 223333446666666655321 112222233333322 2222
Q ss_pred HHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHhHHHHHHHHHhccCChHHHHHHHHHH
Q 043608 351 CNALLVFKELGK--NADSVSWNSIIAACLQHNQAEELFRLFSRMLASQI-KPDHITFNDVMGACAKMASLEMVTQLHCYI 427 (579)
Q Consensus 351 ~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 427 (579)
|++.|++.-. .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5566665421 23444555666667777777777777777655543 124455566667777777777777777777
Q ss_pred HHcCCCC-----chhHHHHHHHHH--HHcC--CHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 428 TKTGLAF-----DVFVMNGLMDIY--IKCG--SLGSARKLFNFMEN--PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 428 ~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.+.. | +..+...|..++ ...| +..+|..+|+++.+ |+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6542 3 233334444442 2222 66666666666653 33223333444666666666666666655432
Q ss_pred C-----C---CC-ChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 497 G-----V---SP-NLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 497 ~-----~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
. . .| |+.++..+|......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 0 0 12 34455444444444555 56666666664
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=3.2e-09 Score=92.74 Aligned_cols=197 Identities=10% Similarity=0.046 Sum_probs=149.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 043608 364 ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLM 443 (579)
Q Consensus 364 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 443 (579)
.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888889999999999999999999988754477777777889999999999999999999976533 677888999
Q ss_pred HHHHHcCCHHHHHHHHhhCCC--CC-h-------hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC---hhHHHHHHH
Q 043608 444 DIYIKCGSLGSARKLFNFMEN--PD-V-------VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN---LVTLVGVLT 510 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~--~~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~ 510 (579)
.+|...|++++|...+++..+ |+ . ..|..+...+...|++++|++.+++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999998873 43 3 45777788888999999999999999885 565 456777777
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhH
Q 043608 511 ACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVV 572 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~ 572 (579)
++...|+ .+++++... + ..+...+... .....|.+++|...+++. ...|+...
T Consensus 162 ~~~~~~~-----~~~~~a~~~-~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPL-A-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHH-----HHHHHHGGG-T-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHH-----HHHHHHHhc-c-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 7765443 345555432 1 2223333332 234567789999999888 44565433
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=2.1e-08 Score=87.47 Aligned_cols=195 Identities=11% Similarity=0.017 Sum_probs=149.2
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHH
Q 043608 332 SNVPVCNAILTMYAKCSVLCNALLVFKEL---GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVM 408 (579)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 408 (579)
.++..+......+...|++++|...|+.. ..+++...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888899999999999999999986 332577777779999999999999999999998863 33567788889
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC---hhhHHHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDV-------FVMNGLMDIYIKCGSLGSARKLFNFMEN--PD---VVSWSSLILG 476 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~~~ 476 (579)
..+...|++++|...+++..+.... +. ..+..+...+...|++++|...|+++.+ |+ ...|..+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999976533 33 4577888889999999999999999885 43 3556667777
Q ss_pred HHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcc
Q 043608 477 YAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l---~p~~~ 214 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL---SPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc---CCCCH
Confidence 76544 34456665543 23344444333 34457799999999999864 55543
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.04 E-value=5.4e-09 Score=106.24 Aligned_cols=161 Identities=11% Similarity=0.001 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
..+|+.+...+.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.+.+++..+.... +...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777777777777777777777776652 223556667777777777777777777777765422 46677777777
Q ss_pred HHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHH
Q 043608 446 YIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a 521 (579)
|.+.|++++|.+.|++..+ .+...|+.+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 7777788877777777652 34567777888888888888888888888774 454 55777788888888888888
Q ss_pred HHHHHHHHH
Q 043608 522 LHLYRIMEN 530 (579)
Q Consensus 522 ~~~~~~~~~ 530 (579)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877777654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.04 E-value=4e-09 Score=107.19 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=141.0
Q ss_pred cHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHH
Q 043608 400 DHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILG 476 (579)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 476 (579)
+...++.+...+...|++++|.+.|++..+.... +...+..+..+|.+.|++++|...|++..+ | +...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3568889999999999999999999999987533 578899999999999999999999998873 4 56789999999
Q ss_pred HHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCCh
Q 043608 477 YAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCV 554 (579)
Q Consensus 477 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 554 (579)
|...|++++|++.|++..+. .| +...|..+..++...|++++|+..|++..+. .|+ ...+..+..+|...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999985 45 4678999999999999999999999999864 454 56888999999999999
Q ss_pred hHHHHHHHhh
Q 043608 555 HEAEDFINQM 564 (579)
Q Consensus 555 ~~A~~~~~~~ 564 (579)
++|.+.+++.
T Consensus 162 ~~A~~~~~ka 171 (723)
T 4gyw_A 162 TDYDERMKKL 171 (723)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=8e-09 Score=93.89 Aligned_cols=201 Identities=7% Similarity=-0.072 Sum_probs=141.0
Q ss_pred ChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc-HhHHHHHHHHHhccCChHHHHHH
Q 043608 349 VLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKPD-HITFNDVMGACAKMASLEMVTQL 423 (579)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 423 (579)
++++|...|+.. ...|...|++++|...|++..+. |.+++ ..++..+...+...|++++|...
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367777666554 44566788888888888776543 22222 45777788888888888888888
Q ss_pred HHHHHHcCC---CC--chhHHHHHHHHHHHc-CCHHHHHHHHhhCCC--C---C----hhhHHHHHHHHHhcCCcHHHHH
Q 043608 424 HCYITKTGL---AF--DVFVMNGLMDIYIKC-GSLGSARKLFNFMEN--P---D----VVSWSSLILGYAQFGCGDEALK 488 (579)
Q Consensus 424 ~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~a~~ 488 (579)
+++..+... .+ ...+++.+..+|... |++++|...|++..+ | + ..++..+...+.+.|++++|+.
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 887764321 11 135677888889886 999999999988763 1 1 3457788899999999999999
Q ss_pred HHHHHHhCCCCCChh------HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcc------hhHHHHHHHH--hcCCh
Q 043608 489 LFTRMRSLGVSPNLV------TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTRE------HCSCVVDLLA--RAGCV 554 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~ 554 (579)
.+++..+........ .|..+..++...|++++|...+++... +.|+.. .+..++..+. ..+++
T Consensus 180 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999864332221 567777888899999999999998873 344422 2344556664 45678
Q ss_pred hHHHHHHHhh
Q 043608 555 HEAEDFINQM 564 (579)
Q Consensus 555 ~~A~~~~~~~ 564 (579)
++|+..++++
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8999998887
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=2.5e-09 Score=96.82 Aligned_cols=217 Identities=14% Similarity=0.072 Sum_probs=147.6
Q ss_pred hcCChHHHHHHHHHc--------CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-cHhHHHHHH
Q 043608 346 KCSVLCNALLVFKEL--------GKN-A-DSVSWNSIIAACLQHNQAEELFRLFSRMLAS------QIKP-DHITFNDVM 408 (579)
Q Consensus 346 ~~~~~~~a~~~~~~~--------~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~ 408 (579)
..|++++|+..+++. +.. | ...++..+...+...|++++|...+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666543 111 2 3557888999999999999999999998764 2223 355788888
Q ss_pred HHHhccCChHHHHHHHHHHHHc------C-CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC-------C-C---hhhH
Q 043608 409 GACAKMASLEMVTQLHCYITKT------G-LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN-------P-D---VVSW 470 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-~---~~~~ 470 (579)
..+...|++++|...+.+..+. . .+.....+..+...|...|++++|...++++.+ + + ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 1 123466788888999999999999999887753 1 2 3567
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhC-------CCCCChh-HHHHHHHHhhccCchH------HHHHHHHHHHHhhCCCC
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSL-------GVSPNLV-TLVGVLTACSHVGLVE------EGLHLYRIMENEYGIIP 536 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~ 536 (579)
..+...|...|++++|...++++.+. ...+... .+..+.......+... .+...++.... ..+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHH
Confidence 78888999999999999999998763 1223322 3333333333333222 22222221110 1111
Q ss_pred CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 537 TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
....+..+..+|...|++++|..++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2346788999999999999999999886
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=1.2e-07 Score=84.22 Aligned_cols=180 Identities=12% Similarity=0.125 Sum_probs=114.2
Q ss_pred HHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 385 LFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGL-AFDVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 385 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
+...|++....+ .++..++..+..++...|++++|.+++......+. .-+...+..+++.+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666677666554 44555555667777778888888888877765543 2356667777788888888888888887776
Q ss_pred C--C-----ChhhHHHHHHH--HHhcC--CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhh
Q 043608 464 N--P-----DVVSWSSLILG--YAQFG--CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEY 532 (579)
Q Consensus 464 ~--~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 532 (579)
+ | +..+...++.+ ....| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 4 13444445444 33334 778888888887654 3543333344447778888888888887665431
Q ss_pred C--------CCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCC
Q 043608 533 G--------IIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 533 ~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
. -+.++.++..++......|+ +|.++++++ ...|+
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 0 13345566555556666675 777777777 33444
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=9.1e-09 Score=93.12 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=20.3
Q ss_pred hhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 502 LVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 502 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
..++..+...|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777653
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.93 E-value=1.9e-08 Score=79.28 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
+..+...+...|++++|..+++++.+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 34455555556666666666655442 344555566666666777777777777766643 23455666667777777
Q ss_pred CchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 516 GLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++
T Consensus 83 ~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 83 GDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 7777777777777653 1223455666777777777777777777766
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=6.5e-08 Score=86.37 Aligned_cols=184 Identities=10% Similarity=-0.037 Sum_probs=114.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc-HhHHH
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-GKNAD----SVSWNSIIAACLQHNQAEELFRLFSRMLASQI-KPD-HITFN 405 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~ 405 (579)
+...+-.+...+.+.|++++|...|+.+ ...|+ ...+..+..++.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455556666777777788887777775 22222 45666677777777777777777777776521 111 33455
Q ss_pred HHHHHHhc--------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 043608 406 DVMGACAK--------MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGY 477 (579)
Q Consensus 406 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 477 (579)
.+..++.. .|++++|...++++.+.... +......+.......+.. ...+..+...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~--------------~~~~~~la~~~ 158 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL--------------ARKQYEAARLY 158 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 55556666 77777777777777655322 222222211111000000 11145667888
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhcc----------CchHHHHHHHHHHHHh
Q 043608 478 AQFGCGDEALKLFTRMRSLGVSP--NLVTLVGVLTACSHV----------GLVEEGLHLYRIMENE 531 (579)
Q Consensus 478 ~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 531 (579)
.+.|++++|+..|+++.+..... ....+..+..++... |++++|...++++.+.
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 89999999999999998753211 234677777777766 8889999999999875
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.86 E-value=1.8e-07 Score=84.84 Aligned_cols=187 Identities=9% Similarity=-0.072 Sum_probs=119.4
Q ss_pred hhcccchhhHHHHHHHHHHc----CCCC-CchhHHHHHHHHHhcCChHHHHHHHHHc-------CCCC-ChhhHHHHHHH
Q 043608 309 CIGRLTLYQGMQVHSYIIKM----GFDS-NVPVCNAILTMYAKCSVLCNALLVFKEL-------GKNA-DSVSWNSIIAA 375 (579)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~l~~~ 375 (579)
+...|++++|...+....+. |.++ ...+++.+..+|.+.|++++|+..++.. +..+ -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666666666555443 2111 1346666777777777777777766654 1111 13467778888
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCC----CCc-HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch------hHHHHHH
Q 043608 376 CLQH-NQAEELFRLFSRMLASQI----KPD-HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDV------FVMNGLM 443 (579)
Q Consensus 376 ~~~~-~~~~~a~~~~~~m~~~~~----~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~ 443 (579)
|... |++++|...|++..+... .+. ..++..+...+...|++++|...+++..+....... ..+..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8885 888888888888765311 111 346777888888889999999999888876543322 1567777
Q ss_pred HHHHHcCCHHHHHHHHhhCCC--CChh------hHHHHHHHHH--hcCCcHHHHHHHHHHHh
Q 043608 444 DIYIKCGSLGSARKLFNFMEN--PDVV------SWSSLILGYA--QFGCGDEALKLFTRMRS 495 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~~~~~--~~~~------~~~~l~~~~~--~~~~~~~a~~~~~~m~~ 495 (579)
.++...|++++|...+++..+ |+.. .+..++.++. ..+++++|+..|+++..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 888889999999999988874 3221 2334455554 34567888888766543
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=1.1e-06 Score=85.72 Aligned_cols=376 Identities=11% Similarity=0.005 Sum_probs=192.0
Q ss_pred ch-hhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--CCeeehhHHhhhhhcCCC-hhhHHHH
Q 043608 48 LR-SLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--RNVVSWTAMIAGCSQNYQ-ENDAIKL 123 (579)
Q Consensus 48 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~ 123 (579)
.| +++.|..+|+.+...- |. |+++.|..+|++... |++..|...+....+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777777777776543 22 788888888888764 777777777776655542 3556677
Q ss_pred HHHHHHC-CCC-CCcccHHHHHHHhcC----CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhccc
Q 043608 124 YIQMLQS-GVM-PGQFTFGSIIKACSG----LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGI 197 (579)
Q Consensus 124 ~~~~~~~-g~~-p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (579)
|+..... |.. ++...|...+..+.. .++.+.+..+|+..+......-...|...... .+......+..+
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~---- 145 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKI---- 145 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHH----
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHH----
Confidence 7776653 322 244555555554432 24566677777777663111111111111110 000011111111
Q ss_pred CCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcC
Q 043608 198 ARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASH 277 (579)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 277 (579)
+... .+.+..|..+++++... +. ..+...|...+..-...
T Consensus 146 -----------~~~~--~~~y~~ar~~y~~~~~~------------------------~~---~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 146 -----------VGDT--LPIFQSSFQRYQQIQPL------------------------IR---GWSVKNAARLIDLEMEN 185 (493)
T ss_dssp -----------HHHH--HHHHHHHHHHHHHHHHH------------------------HH---TCSHHHHHHHHHHHHTC
T ss_pred -----------HHHH--hHHHHHHHHHHHHHHHH------------------------Hh---hccHHHHHHHHHHHhcC
Confidence 1110 01223333333333211 00 11223343333332211
Q ss_pred C-------ChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCh
Q 043608 278 S-------NANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVL 350 (579)
Q Consensus 278 ~-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (579)
+ ..+.+..+|+++.... +-+...+...+.-+.+.|+.+.|..+++..... +.+...+.. |....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcch
Confidence 1 0234566777766542 334555655666666777888888888888777 333332221 2221111
Q ss_pred HHHH-HHHHHc--CC-------C--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc-cCCh
Q 043608 351 CNAL-LVFKEL--GK-------N--ADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK-MASL 417 (579)
Q Consensus 351 ~~a~-~~~~~~--~~-------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~ 417 (579)
++.. .+.+.. .. . .....|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 259 EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCCh
Confidence 1111 111111 00 0 11234566666666677788888888887 32 11233333322211111 2368
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 418 EMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
+.|..+|+...+.- +-++..+...++...+.|+.+.|..+|+.+.+ ....|...+..-...|+.+.+.++++++.+
T Consensus 337 ~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 337 ATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888877653 22344556667777778888888888888743 456677777666677888888777777663
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=1.7e-07 Score=84.67 Aligned_cols=162 Identities=9% Similarity=-0.029 Sum_probs=129.9
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHH-H
Q 043608 398 KPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSL-I 474 (579)
Q Consensus 398 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l-~ 474 (579)
+.+...+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...++++.. |+....... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 444556667777888889999999999988876533 567888899999999999999999999984 655433332 2
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---cchhHHHHHHHHhc
Q 043608 475 LGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT---REHCSCVVDLLARA 551 (579)
Q Consensus 475 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 551 (579)
..+...++.++|...+++..+.. +.+...+..+...+...|++++|...|+++.+. .|+ ...+..++..|...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHc
Confidence 33667888999999999998863 335778889999999999999999999999976 343 55788999999999
Q ss_pred CChhHHHHHHHhh
Q 043608 552 GCVHEAEDFINQM 564 (579)
Q Consensus 552 g~~~~A~~~~~~~ 564 (579)
|+.++|...+++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 9999999888764
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=4.4e-06 Score=81.40 Aligned_cols=198 Identities=11% Similarity=0.036 Sum_probs=125.4
Q ss_pred HHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 351 CNALLVFKEL--GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 351 ~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
+.+..+|++. ..+.+...|...+.-+.+.|+.++|..+|++.... |....+... +......++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhHH---HHHHH
Confidence 3455677665 23335677888888888899999999999999887 444333221 2111111111 22222
Q ss_pred HcC---------C---CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCC--hhhHHHHHHHHH-hcCCcHHHHHHHHHH
Q 043608 429 KTG---------L---AFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPD--VVSWSSLILGYA-QFGCGDEALKLFTRM 493 (579)
Q Consensus 429 ~~~---------~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~m 493 (579)
+.- . .....+|...+....+.++.+.|..+|+....|. ...|......-. ..++.+.|..+|+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 110 0 1123456666777777888999999999884343 222322121112 234799999999999
Q ss_pred HhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 494 RSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 494 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.. +-++..+...+....+.|+.+.|..+|+++. .....|...++.-...|+.+.+..++++.
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8752 2234455666777778899999999999872 24456777777667789999999988777
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.81 E-value=5.5e-08 Score=83.26 Aligned_cols=183 Identities=11% Similarity=0.023 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
..+......+...|++++|...|++..+. .|+.. .+.. . .... . ..........+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~-~~~~--~---------------~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T-NVDK--N---------------SEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H-HSCT--T---------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h-hhcc--h---------------hhhhHHHHHHHHHH
Confidence 34444556677889999999999988775 44432 2322 0 0000 0 00011222335566
Q ss_pred HHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCc--hH
Q 043608 446 YIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGL--VE 519 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~--~~ 519 (579)
|.+.|++++|...|++..+ | +...|..+...+...|++++|+..|++..+. .| +...+..+..++...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHH
Confidence 6666666666666666552 2 4455666666666666777777777666664 33 34456566555554443 22
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhh
Q 043608 520 EGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKS 575 (579)
Q Consensus 520 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 575 (579)
.+...++... ...|....+..+..++...|++++|...+++. ...|+.....+
T Consensus 142 ~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 142 KLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3333333332 11121122333444555566667777766666 44566554444
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=2.5e-07 Score=72.64 Aligned_cols=129 Identities=14% Similarity=0.183 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 043608 369 WNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK 448 (579)
Q Consensus 369 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (579)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------
Confidence 4445555555566666666665555432 2233344444444444445555554444444332
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 449 CGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 66 ---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 66 ---------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp ---------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ---------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 1234455566667777777777777777777643 234556777777777888888888887777
Q ss_pred HHh
Q 043608 529 ENE 531 (579)
Q Consensus 529 ~~~ 531 (579)
...
T Consensus 130 ~~~ 132 (136)
T 2fo7_A 130 LEL 132 (136)
T ss_dssp HHH
T ss_pred Hcc
Confidence 653
No 98
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=3.1e-07 Score=78.95 Aligned_cols=119 Identities=12% Similarity=-0.061 Sum_probs=59.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCC
Q 043608 406 DVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGC 482 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 482 (579)
.+...+...|++++|...+++. +.|+...+..+..+|.+.|++++|...+++..+ .+...|..+...|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 3344444555555555555443 233445555555555555555555555554431 233445555555555555
Q ss_pred cHHHHHHHHHHHhCCCCCCh----------------hHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPNL----------------VTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+++|.+.+++..+.. +.+. ..+..+..++...|++++|...+++..
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555555555555432 1111 344455555555555555555555554
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.77 E-value=1.1e-06 Score=78.37 Aligned_cols=187 Identities=9% Similarity=-0.068 Sum_probs=103.2
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHcC
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPD---LASWNALIAGVASH 277 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 277 (579)
+...+-.+...+.+.|++++|.+.|+++.+.. +.+ ...+..+..++.+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~a~~~lg~~~~~~ 65 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----------------------------RTHEWAADAQFYLARAYYQN 65 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----------------------------SCSTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------------CCCcchHHHHHHHHHHHHHh
Confidence 44555556666777777777777777776653 112 45566666777777
Q ss_pred CChHHHHHHHHHHHhCCC-CCC-hHHHHHHHHHhhc--------ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 043608 278 SNANEAMSLFSEMRDREL-LPD-GLTVHSLLCACIG--------RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC 347 (579)
Q Consensus 278 ~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (579)
|++++|...|+....... .|. ...+..+..++.. .|++++|...++.+.+.... +......+.......
T Consensus 66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELR 144 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHH
Confidence 777777777777765421 111 2334444455555 67777777777776665322 222221111100000
Q ss_pred CChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHhHHHHHHHHHhcc----------C
Q 043608 348 SVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKP--DHITFNDVMGACAKM----------A 415 (579)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~----------~ 415 (579)
+. -...+..+...|.+.|++++|...|+++.+..... ....+..+..++... |
T Consensus 145 ~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 145 AK---------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp HH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HH---------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 00 01123455666777777777777777776642111 123455555555544 6
Q ss_pred ChHHHHHHHHHHHHcC
Q 043608 416 SLEMVTQLHCYITKTG 431 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~ 431 (579)
++++|...++.+.+..
T Consensus 210 ~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 210 RYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHC
Confidence 6677777777776543
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=5.3e-07 Score=77.30 Aligned_cols=158 Identities=14% Similarity=-0.011 Sum_probs=104.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC----ChHHHHHHHHHHHHcCCCCchhHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA----SLEMVTQLHCYITKTGLAFDVFVMN 440 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 440 (579)
++..+..+...|...+++++|..+|++..+.| +...+..+...+.. + ++++|.+.+++..+.+ ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56666666666777777777777777776654 34455555555655 5 6777777777776654 455666
Q ss_pred HHHHHHHH----cCCHHHHHHHHhhCCCC-C----hhhHHHHHHHHHh----cCCcHHHHHHHHHHHhCCCCCChhHHHH
Q 043608 441 GLMDIYIK----CGSLGSARKLFNFMENP-D----VVSWSSLILGYAQ----FGCGDEALKLFTRMRSLGVSPNLVTLVG 507 (579)
Q Consensus 441 ~l~~~~~~----~~~~~~A~~~~~~~~~~-~----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 507 (579)
.|...|.. .+++++|...|++..+. + +..+..|...|.. .+++++|+..|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 66666665 66777777777776642 2 4666777777776 66778888888887765 234445555
Q ss_pred HHHHhhcc-C-----chHHHHHHHHHHHHh
Q 043608 508 VLTACSHV-G-----LVEEGLHLYRIMENE 531 (579)
Q Consensus 508 l~~~~~~~-g-----~~~~a~~~~~~~~~~ 531 (579)
|...|... | ++++|..+|++..+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 66655432 2 777787777777665
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=4.5e-07 Score=78.69 Aligned_cols=182 Identities=12% Similarity=0.000 Sum_probs=116.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-cHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch--hHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIK-P-DHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDV--FVMN 440 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 440 (579)
+...+..+...+...|++++|...|+++.+.... | ....+..+..++...|++++|...++.+.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777888899999999999998875321 1 1346777788888999999999999998876543221 2344
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh-HH--------------
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV-TL-------------- 505 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~-------------- 505 (579)
.+..++.+.+.. .+ ..|..+...+...|++++|...|+++.+. .|+.. ..
T Consensus 83 ~~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHH
Confidence 444444432210 00 01112223333455666666666666654 23321 11
Q ss_pred ---HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc----chhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 506 ---VGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR----EHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 506 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+...+.+.|++++|...|+++.+. .|+. ..+..+..+|.+.|+.++|.+.++++
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRD---YPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHH---CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 24556778899999999999999875 3432 46778899999999999999999988
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=1.8e-07 Score=77.57 Aligned_cols=154 Identities=14% Similarity=0.026 Sum_probs=106.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHH-HHhcC
Q 043608 405 NDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSLILG-YAQFG 481 (579)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~-~~~~~ 481 (579)
......+...|++++|...++...+.. +.+...+..+..++...|++++|...++.+.+ |+...+..+... +...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 344455566677777777776655433 22556677777888888888888888888764 433322222211 22333
Q ss_pred CcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---cchhHHHHHHHHhcCChhHH
Q 043608 482 CGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT---REHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 557 (579)
+..+|...+++..+. .| +...+..+..++...|++++|...|+++.+. .|+ ...+..+..++...|+.++|
T Consensus 89 ~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 89 AESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp TSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred ccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCcH
Confidence 445578888888875 45 4678888888999999999999999988854 443 44778888999999999999
Q ss_pred HHHHHhh
Q 043608 558 EDFINQM 564 (579)
Q Consensus 558 ~~~~~~~ 564 (579)
...+++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888765
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.7e-07 Score=95.91 Aligned_cols=181 Identities=12% Similarity=0.007 Sum_probs=100.6
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH
Q 043608 377 LQHNQAEELFRLFSRML--------ASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK 448 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 448 (579)
...|++++|.+.+++.. +. .+.+...+..+...+...|++++|...+++..+.+. .+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 45566666666666665 22 122334555555666666666666666666665432 245556666666666
Q ss_pred cCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHH
Q 043608 449 CGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLY 525 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 525 (579)
.|++++|...|++..+ | +...|..+..+|.+.|++++ ++.|++..+.+ +-+...|..+..++...|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666552 2 34555666666666666666 66666666542 223445666666666666666666666
Q ss_pred HHHHHhhCCCCC-cchhHHHHHHHHhcCC--------hhHHHHHHHhh
Q 043608 526 RIMENEYGIIPT-REHCSCVVDLLARAGC--------VHEAEDFINQM 564 (579)
Q Consensus 526 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~ 564 (579)
++..+ ..|+ ...+..+..++...|+ +++|.+.++++
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 66552 2343 3344455555544332 44555555444
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.73 E-value=2.3e-07 Score=79.38 Aligned_cols=158 Identities=7% Similarity=-0.035 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCC
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNS----------------IIAACLQHNQAEELFRLFSRMLASQI 397 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~~~ 397 (579)
.+......+...|++++|+..|+.. ...| +...|.. +..++.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3444556678899999999999986 3333 3344555 5666666666666666666666542
Q ss_pred CCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC--HHHHHHHHhhCCCCChhh--HHHH
Q 043608 398 KPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS--LGSARKLFNFMENPDVVS--WSSL 473 (579)
Q Consensus 398 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~--~~~l 473 (579)
+-+...+..+...+...|++++|...+++..+... .+...+..+..+|...|+ .+.+...++....|+... +...
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 22445555666666666666666666666665442 244455555555543332 333444555544444322 2222
Q ss_pred HHHHHhcCCcHHHHHHHHHHHh
Q 043608 474 ILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
..++...|++++|...|++..+
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334445555555555555554
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=1.9e-07 Score=85.44 Aligned_cols=160 Identities=6% Similarity=-0.027 Sum_probs=80.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhc-ccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHH
Q 043608 277 HSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIG-RLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALL 355 (579)
Q Consensus 277 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (579)
.|++++|.+++++..+.. +. .+.+ .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456667777776665431 11 1222 35566665555443 345566677777766
Q ss_pred HHHHc-------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCc--HhHHHHHHHHHhccCChHHHHH
Q 043608 356 VFKEL-------GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQ---IKPD--HITFNDVMGACAKMASLEMVTQ 422 (579)
Q Consensus 356 ~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~ 422 (579)
.|... +..+ -..+|+.+...|...|++++|...|++..+.- -.+. ..++..+...+.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 66543 1111 12356666666666777777777766654321 0111 2344455555555 66666666
Q ss_pred HHHHHHHcCCCC-----chhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 423 LHCYITKTGLAF-----DVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 423 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
.+++..+..... ...++..+..+|.+.|++++|...|++..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666554321100 12334444455555555555555554443
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=4.3e-08 Score=81.41 Aligned_cols=61 Identities=10% Similarity=-0.071 Sum_probs=44.4
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ 98 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 98 (579)
.+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++++|+..+++..+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 44555666777778888888887777665 55667777777777778888888888877764
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=5.1e-08 Score=99.70 Aligned_cols=165 Identities=8% Similarity=-0.079 Sum_probs=97.3
Q ss_pred hhhhhhhhHHHHHH--------HhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCCh
Q 043608 49 RSLQLGRKVHDHIL--------LSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQE 117 (579)
Q Consensus 49 ~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 117 (579)
|++++|.+.+++.. +.. +.+...+..+...+...|++++|++.|++..+ .+...|..+...+...|++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 45666666666655 332 34455556666666666666666666666552 2344566666666666666
Q ss_pred hhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhccc
Q 043608 118 NDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGI 197 (579)
Q Consensus 118 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 197 (579)
++|.+.|++..+.. +-+...+..+..++...|++++ .+.|++..+... .+...+..+..++.+.|++++|.+.|++.
T Consensus 484 ~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 484 DSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 66666666666542 2234556666666666677777 777766666542 34556666777777777777777777776
Q ss_pred CCC---cHhhHHHHHHHHHhcCC
Q 043608 198 ARK---DVTSWGSMIAAFSKLGY 217 (579)
Q Consensus 198 ~~~---~~~~~~~l~~~~~~~~~ 217 (579)
.+. +..++..+..++...++
T Consensus 561 l~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 561 PPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CTTSTTHHHHHHHHHHHTC----
T ss_pred cccCcccHHHHHHHHHHHHccCC
Confidence 543 34455555556555443
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.70 E-value=9.5e-07 Score=76.60 Aligned_cols=180 Identities=9% Similarity=-0.027 Sum_probs=120.3
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHc-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh----H
Q 043608 333 NVPVCNAILTMYAKCSVLCNALLVFKEL-GKNAD----SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI----T 403 (579)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ 403 (579)
+...+..+...+.+.|++++|+..|+.+ ...|+ ...+..+..++.+.|++++|...|+++.+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3445566777889999999999999987 22222 3568888999999999999999999998863 3321 3
Q ss_pred HHHHHHHHhc------------------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCC
Q 043608 404 FNDVMGACAK------------------MASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENP 465 (579)
Q Consensus 404 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 465 (579)
+..+..++.. .|++++|...++.+.+.... +..........-.-.+...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~------------ 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLA------------ 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHH------------
Confidence 4444444433 45666677777666654321 1222211111000000000
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh----hHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL----VTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.....+...|.+.|++++|+..|+++.+. .|+. ..+..+..++.+.|++++|.+.++.+...
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01134567788999999999999999986 3442 46888899999999999999999988864
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=6.7e-07 Score=80.80 Aligned_cols=172 Identities=7% Similarity=0.006 Sum_probs=115.6
Q ss_pred HHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHH
Q 043608 190 ARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNA 269 (579)
Q Consensus 190 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (579)
..+.++.....+...+..+...+.+.|++++|.+.|++..+.. +.+...+..
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------------P~~~~a~~~ 156 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS----------------------------NQNGEIGLL 156 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------------TSCHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------------CcchhHHHH
Confidence 3344444444455667777888889999999999999988774 456778888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHH-HHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLL-CACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCS 348 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (579)
+...+.+.|++++|...++..... .|+........ ..+...++.+.+...++...+.. +.+...+..+...+...|
T Consensus 157 la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g 233 (287)
T 3qou_A 157 LAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVG 233 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcc
Confidence 889999999999999999888654 45543322222 23455666777777777777765 335566666667777777
Q ss_pred ChHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 349 VLCNALLVFKEL-GKNA---DSVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 349 ~~~~a~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
++++|...|+++ ...| +...+..++..+...|+.++|...|++.
T Consensus 234 ~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 777777776665 2222 2445666666666667666666666554
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=3.4e-06 Score=72.23 Aligned_cols=162 Identities=9% Similarity=-0.035 Sum_probs=125.9
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhccc----chhhHHHHHHHHHHcCCCCCchhH
Q 043608 262 PDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRL----TLYQGMQVHSYIIKMGFDSNVPVC 337 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 337 (579)
.+..++..+...+...+++++|.+.|++..+.| +...+..+-..+.. + +.++|...++...+.| ++..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 456778888888888999999999999998875 45556666666666 6 8999999999998876 56677
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHcCCCCC----hhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHH
Q 043608 338 NAILTMYAK----CSVLCNALLVFKELGKNAD----SVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFN 405 (579)
Q Consensus 338 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 405 (579)
..+...|.. .+++++|.+.|+..-...+ ..++..+...|.. .+++++|..+|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 778888876 7899999999998744323 6788888888888 78899999999998886 22334555
Q ss_pred HHHHHHhcc------CChHHHHHHHHHHHHcCC
Q 043608 406 DVMGACAKM------ASLEMVTQLHCYITKTGL 432 (579)
Q Consensus 406 ~l~~~~~~~------~~~~~a~~~~~~~~~~~~ 432 (579)
.+...|... .+.++|...++...+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 566665432 388999999998888774
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=5.3e-07 Score=82.47 Aligned_cols=225 Identities=8% Similarity=-0.088 Sum_probs=150.4
Q ss_pred cccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043608 311 GRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFS 390 (579)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 390 (579)
..|++++|.+++++..+.... . .+...++++.|...|... ...|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHH
Confidence 356778888888877664321 1 011157888888877664 456777888998888888
Q ss_pred HHHHC----CCCC-cHhHHHHHHHHHhccCChHHHHHHHHHHHHcC--C-CC--chhHHHHHHHHHHHcCCHHHHHHHHh
Q 043608 391 RMLAS----QIKP-DHITFNDVMGACAKMASLEMVTQLHCYITKTG--L-AF--DVFVMNGLMDIYIKCGSLGSARKLFN 460 (579)
Q Consensus 391 ~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 460 (579)
+..+. +-.+ -..+|..+...+...|++++|...+++..+.- . .+ ...++..+..+|.. |++++|...++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 76543 2111 13467778888888899999999888776431 1 11 24567778888888 99999988888
Q ss_pred hCCC-----CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHhhccCchHHHHHHHH
Q 043608 461 FMEN-----PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSL----GVSPN-LVTLVGVLTACSHVGLVEEGLHLYR 526 (579)
Q Consensus 461 ~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 526 (579)
+..+ .+ ..++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7763 11 356777888888999999999999888753 11111 2256667777778899999999998
Q ss_pred HHHHhhCCCCCcc---hhHHHHHHHHhcCChhHHHHH
Q 043608 527 IMENEYGIIPTRE---HCSCVVDLLARAGCVHEAEDF 560 (579)
Q Consensus 527 ~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 560 (579)
+.. ...-.++.. ....++.++ ..|+.+.+.++
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 887 411111221 244555555 57777777663
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.64 E-value=5.1e-07 Score=72.43 Aligned_cols=139 Identities=8% Similarity=-0.121 Sum_probs=91.2
Q ss_pred HHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHH
Q 043608 179 AMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARIL 255 (579)
Q Consensus 179 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~ 255 (579)
..+...|++++|+..++..... +...+..+...|.+.|++++|.+.|++..+..
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~----------------------- 61 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ----------------------- 61 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Confidence 3445566777777777665553 34456677788888888888888888887764
Q ss_pred hhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHhhcccchhhHHHH-HHHHHHcCCCCC
Q 043608 256 FNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLP-DGLTVHSLLCACIGRLTLYQGMQV-HSYIIKMGFDSN 333 (579)
Q Consensus 256 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~ 333 (579)
+.+..+|..+..++.+.|++++|...|+...+. .| +...+..+...+.+.|+.+++.+. ++...+.. +.+
T Consensus 62 -----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~ 133 (150)
T 4ga2_A 62 -----ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGS 133 (150)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTC
T ss_pred -----CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCC
Confidence 456777888888888888888888888887764 34 345566666666777776655543 46666654 224
Q ss_pred chhHHHHHHHHHhcC
Q 043608 334 VPVCNAILTMYAKCS 348 (579)
Q Consensus 334 ~~~~~~l~~~~~~~~ 348 (579)
+.++......+...|
T Consensus 134 ~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhC
Confidence 455555555544444
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=4.2e-07 Score=91.33 Aligned_cols=150 Identities=9% Similarity=-0.078 Sum_probs=109.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHH
Q 043608 379 HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKL 458 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 458 (579)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887752 33567788888899999999999999999887653 3577888899999999999999999
Q ss_pred HhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc---CchHHHHHHHHHHHHh
Q 043608 459 FNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV---GLVEEGLHLYRIMENE 531 (579)
Q Consensus 459 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 531 (579)
+++..+ .+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 998763 456788888999999999999999999998863 23566888888889888 9999999999998865
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.58 E-value=1.5e-07 Score=75.55 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccC
Q 043608 441 GLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVG 516 (579)
Q Consensus 441 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 516 (579)
.+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..|++..+. .| +...+..+...+.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 344444444444444444444431 23444555555555555555555555555543 23 2345555555555555
Q ss_pred chHHHHHH-HHHHHHhhCCCC-CcchhHHHHHHHHhcC
Q 043608 517 LVEEGLHL-YRIMENEYGIIP-TREHCSCVVDLLARAG 552 (579)
Q Consensus 517 ~~~~a~~~-~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 552 (579)
++++|.+. +++..+. .| ++..|......+.+.|
T Consensus 114 ~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 114 VTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp SSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 55443332 3444432 23 2334444444444444
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=5.8e-06 Score=70.90 Aligned_cols=129 Identities=8% Similarity=-0.108 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHH
Q 043608 174 QNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFAR 253 (579)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~ 253 (579)
+..+...+...|++++|...|++...++...|..+...+...|++++|.+.+++..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence 34456677888999999999999888888889999999999999999999999988764
Q ss_pred HHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--------------C-ChHHHHHHHHHhhcccchhhH
Q 043608 254 ILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELL--------------P-DGLTVHSLLCACIGRLTLYQG 318 (579)
Q Consensus 254 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~~~~~~a 318 (579)
+.+...|..+..++...|++++|.+.|+...+.... | ....+..+..++...|++++|
T Consensus 68 -------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 68 -------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 456778888889999999999999999988875211 1 114566666777778888888
Q ss_pred HHHHHHHHHcCC
Q 043608 319 MQVHSYIIKMGF 330 (579)
Q Consensus 319 ~~~~~~~~~~~~ 330 (579)
...++...+...
T Consensus 141 ~~~~~~al~~~p 152 (213)
T 1hh8_A 141 EEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHcCc
Confidence 888888776643
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.53 E-value=9.7e-06 Score=73.49 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=49.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCC-CCCChH----HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc-----hhHHH
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRE-LLPDGL----TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV-----PVCNA 339 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 339 (579)
.+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...++.+.+.....+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3567778888888888888877642 122211 1223444455556677777777766664322211 13455
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 043608 340 ILTMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~ 359 (579)
+...|...|++++|...|+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~ 180 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555544
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.50 E-value=1.5e-06 Score=87.34 Aligned_cols=149 Identities=11% Similarity=-0.044 Sum_probs=114.9
Q ss_pred cCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHH
Q 043608 347 CSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLH 424 (579)
Q Consensus 347 ~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 424 (579)
.|++++|.+.+++. ...| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999886 3333 56789999999999999999999999998863 345778888999999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhc---CCcHHHHHHHHHHHhCC
Q 043608 425 CYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQF---GCGDEALKLFTRMRSLG 497 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~ 497 (579)
++..+... .+...+..+..+|.+.|++++|.+.+++..+ .+...+..+...+... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998753 3678889999999999999999999998863 4567788899999999 99999999999999864
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=1.1e-05 Score=73.21 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=106.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHh----HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----hhHHHH
Q 043608 372 IIAACLQHNQAEELFRLFSRMLASQ-IKPDHI----TFNDVMGACAKMASLEMVTQLHCYITKTGLA-FD----VFVMNG 441 (579)
Q Consensus 372 l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 441 (579)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3555666777777777777766542 122211 2334555566667777777777777763322 22 225777
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC------CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC----CCCCC-hhHHH
Q 043608 442 LMDIYIKCGSLGSARKLFNFMEN------PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSL----GVSPN-LVTLV 506 (579)
Q Consensus 442 l~~~~~~~~~~~~A~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 506 (579)
+..+|...|++++|...++++.+ .+ ..++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77788888888888877777652 11 236677888888999999999988887642 22222 55788
Q ss_pred HHHHHhhccCc-hHHHHHHHHHHHHh
Q 043608 507 GVLTACSHVGL-VEEGLHLYRIMENE 531 (579)
Q Consensus 507 ~l~~~~~~~g~-~~~a~~~~~~~~~~ 531 (579)
.+..++.+.|+ +++|.+.+++...-
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888999994 69999998887754
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=5.2e-06 Score=75.28 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=86.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-----hHHHHHHHHHhccCChHHHHHHHHHHHHcCCC---Cc--hh
Q 043608 368 SWNSIIAACLQHNQAEELFRLFSRMLASQIKPDH-----ITFNDVMGACAKMASLEMVTQLHCYITKTGLA---FD--VF 437 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 437 (579)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677777888888777776664322111 11223344455666777777766666532211 11 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCC-----CCC-----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC----CCCC-h
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFME-----NPD-----VVSWSSLILGYAQFGCGDEALKLFTRMRSLG----VSPN-L 502 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~-~ 502 (579)
+++.+...|...|++++|...++++. .|+ ..++..+...|...|++++|+..+++..+.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 55556666666666666666665543 122 1345555566666666666666666554321 1111 3
Q ss_pred hHHHHHHHHhhccCchHHH-HHHHHHHH
Q 043608 503 VTLVGVLTACSHVGLVEEG-LHLYRIME 529 (579)
Q Consensus 503 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 529 (579)
.+|..+..++...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3555566666666666666 55555544
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.48 E-value=1.4e-05 Score=71.86 Aligned_cols=221 Identities=10% Similarity=0.029 Sum_probs=167.3
Q ss_pred hhHhhhcCCh-hHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcch--hhhhhhhHHHHHHHhCCCCChhHHHHHHHHH--
Q 043608 6 VSSLCKQNLY-NEALVAYDFSQNNTNIRIRPSTYAGLISACSSLR--SLQLGRKVHDHILLSKCQPDVVLQNHILNMY-- 80 (579)
Q Consensus 6 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 80 (579)
+++..+.|.. ++|++.++.+... .|-+..+++.--..+...+ +++++++.++.++... +-+..+|+..-..+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 3444555555 6899999999985 3334446666666677777 9999999999999887 56667777666666
Q ss_pred --Hcc---CChhhHHHhhcCCCC---CCeeehhHHhhhhhcCCChh--hHHHHHHHHHHCCCCCCcccHHHHHHHhcCCC
Q 043608 81 --GKC---GSLEDARMGFDKMPQ---RNVVSWTAMIAGCSQNYQEN--DAIKLYIQMLQSGVMPGQFTFGSIIKACSGLG 150 (579)
Q Consensus 81 --~~~---g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 150 (579)
... +++++++++++.+.+ .|-.+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.-...+...+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 555 789999999998874 45567777777777788888 9999999999874 346667776666666666
Q ss_pred c------chhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHH-HHHHhcccCC------CcHhhHHHHHHHHHhcCC
Q 043608 151 S------VCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILD-ARNVFSGIAR------KDVTSWGSMIAAFSKLGY 217 (579)
Q Consensus 151 ~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~------~~~~~~~~l~~~~~~~~~ 217 (579)
. ++++++.++.+.... +.|...|+-+-..+.+.|+... +..+.+++.. ++..++..++..+.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 888999998888875 4677888888888888887443 4455555432 366788899999999999
Q ss_pred hHHHHHHHHHHHhc
Q 043608 218 ELEALCHFNEMLHH 231 (579)
Q Consensus 218 ~~~a~~~~~~m~~~ 231 (579)
.++|.++++.+.++
T Consensus 274 ~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 274 YNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999863
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.48 E-value=4.8e-05 Score=68.32 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChH--HHHHHHHHHHHcC
Q 043608 380 NQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLE--MVTQLHCYITKTG 431 (579)
Q Consensus 380 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~ 431 (579)
+++++++..++++.+.. +-+...|+.-...+...|.++ ++.+.++++.+..
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 34455555555554432 223444444444444444444 4444555444433
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=9.6e-07 Score=75.13 Aligned_cols=153 Identities=11% Similarity=-0.002 Sum_probs=80.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHHcCC
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKT----GLA-FDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 451 (579)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+. +.. .....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567777777755444331 1234556666667777777777777777766531 111 123445555666666666
Q ss_pred HHHHHHHHhhCCC-----C-C----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC---CCC--hhHHHHHHHHhhccC
Q 043608 452 LGSARKLFNFMEN-----P-D----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGV---SPN--LVTLVGVLTACSHVG 516 (579)
Q Consensus 452 ~~~A~~~~~~~~~-----~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~g 516 (579)
+++|...+++..+ + + ...+..+...+...|++++|...+++..+... .+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 6666666655431 2 2 12344455555566666666666665543210 111 123445555555666
Q ss_pred chHHHHHHHHHHHH
Q 043608 517 LVEEGLHLYRIMEN 530 (579)
Q Consensus 517 ~~~~a~~~~~~~~~ 530 (579)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555553
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.46 E-value=1.2e-06 Score=69.86 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN--P-DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSH 514 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 514 (579)
.+..+...+.+.|++++|...|+.+.+ | +...|..+..+|...|++++|+..|++..+.. +.+...|..+..+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 333444444444555555444444431 2 23344444444444444445544444444431 1123344444444444
Q ss_pred cCchHHHHHHHHHHH
Q 043608 515 VGLVEEGLHLYRIME 529 (579)
Q Consensus 515 ~g~~~~a~~~~~~~~ 529 (579)
.|++++|...|++..
T Consensus 117 lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 117 LKAPLKAKECFELVI 131 (151)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444444
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=2.2e-06 Score=70.05 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV 515 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 515 (579)
+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 34444555555566666555555441 234555556666666666666666666666542 22345566666666666
Q ss_pred CchHHHHHHHHHHHHhhCCCC-Ccchh--HHHHHHHHhcCChhHHHHHHHhh
Q 043608 516 GLVEEGLHLYRIMENEYGIIP-TREHC--SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|++++|...+++..+. .| +...+ ..+...+.+.|++++|...+++.
T Consensus 95 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6677776666666643 22 22233 22333355666666666666554
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=7.1e-06 Score=71.89 Aligned_cols=135 Identities=10% Similarity=-0.024 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhcc
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFMEN--PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN--LVTLVGVLTACSHV 515 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~ 515 (579)
-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3455566677777777777777763 433344445556667777777777776543321 111 22556667777777
Q ss_pred CchHHHHHHHHHHHHhhCCCCC--cchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHhhhh
Q 043608 516 GLVEEGLHLYRIMENEYGIIPT--REHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVWKSL 576 (579)
Q Consensus 516 g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 576 (579)
|++++|+..|++.... ...|. .........++.+.|+.++|...|+++ ...|+...+..|
T Consensus 185 G~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 185 ALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp TCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 7777777777777632 22143 234455666777777777777777777 344554444443
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.40 E-value=2.8e-06 Score=65.57 Aligned_cols=91 Identities=8% Similarity=-0.094 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHh
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLAR 550 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (579)
......|.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..+++..+. -+.+...|..+..+|..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHH
Confidence 334444555555555555555554432 223444555555555555555555555555432 11123344455555555
Q ss_pred cCChhHHHHHHHhh
Q 043608 551 AGCVHEAEDFINQM 564 (579)
Q Consensus 551 ~g~~~~A~~~~~~~ 564 (579)
.|++++|.+.+++.
T Consensus 94 ~~~~~~A~~~~~~a 107 (126)
T 4gco_A 94 MREWSKAQRAYEDA 107 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555544
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=9.5e-06 Score=73.56 Aligned_cols=162 Identities=12% Similarity=-0.038 Sum_probs=120.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hh
Q 043608 403 TFNDVMGACAKMASLEMVTQLHCYITKTGLAFD-----VFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VV 468 (579)
Q Consensus 403 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~ 468 (579)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++..+ .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778899999999999988876543221 12234466677888999999999887642 22 34
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC-CCCCC-----hhHHHHHHHHhhccCchHHHHHHHHHHHHhh---CCCC-Cc
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL-GVSPN-----LVTLVGVLTACSHVGLVEEGLHLYRIMENEY---GIIP-TR 538 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~ 538 (579)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999998731 01222 2588899999999999999999999987541 1111 14
Q ss_pred chhHHHHHHHHhcCChhHH-HHHHHhh
Q 043608 539 EHCSCVVDLLARAGCVHEA-EDFINQM 564 (579)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 564 (579)
.+|..+..+|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5678889999999999999 7767665
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.36 E-value=7.8e-07 Score=71.09 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCC--C-CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFME--N-PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTA 511 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 511 (579)
+...+..+...+.+.|++++|...|+... . .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34455566667777777777777777665 2 355666677777777777777777777777642 2245566677777
Q ss_pred hhccCchHHHHHHHHHHHHh
Q 043608 512 CSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=6e-06 Score=63.45 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3444445555555555555555554431 234455555566666666666666666665542 224455556666666
Q ss_pred ccCchHHHHHHHHHHHH
Q 043608 514 HVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~ 530 (579)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 66666666666666654
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.35 E-value=4.7e-06 Score=65.01 Aligned_cols=115 Identities=11% Similarity=-0.004 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTA 511 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 511 (579)
+...+..+...+.+.|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 344455555566666666666666665442 244555666666666677777777777666642 2245566666666
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC
Q 043608 512 CSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG 552 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (579)
+...|++++|...+++..+. .+.+...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 77777777777777766643 1122334455555555444
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=3.6e-06 Score=65.09 Aligned_cols=105 Identities=9% Similarity=-0.075 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhC-CCCC----cchhHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYG-IIPT----REHCSC 543 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~~ 543 (579)
.+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+..+++..+... ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556666777777777777777777642 22355666777777777777777777777664311 1111 124555
Q ss_pred HHHHHHhcCChhHHHHHHHhh-cCCCChhHhh
Q 043608 544 VVDLLARAGCVHEAEDFINQM-ACDADIVVWK 574 (579)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 574 (579)
+..++...|++++|++.+++. ...||+.+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 666677777777777777765 3345554443
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=4e-06 Score=71.22 Aligned_cols=150 Identities=12% Similarity=-0.045 Sum_probs=88.4
Q ss_pred hcCChHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHhHHHHHHHHHhccCChH
Q 043608 346 KCSVLCNALLVFKELGKN--ADSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKP-DHITFNDVMGACAKMASLE 418 (579)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 418 (579)
..|++++|.+.++.+... .....+..+...+...|++++|...+++.... +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 345666666632222111 13445666666666777777777777665441 1111 2334555666667777777
Q ss_pred HHHHHHHHHHHc----CCCC--chhHHHHHHHHHHHcCCHHHHHHHHhhCCC-----CCh----hhHHHHHHHHHhcCCc
Q 043608 419 MVTQLHCYITKT----GLAF--DVFVMNGLMDIYIKCGSLGSARKLFNFMEN-----PDV----VSWSSLILGYAQFGCG 483 (579)
Q Consensus 419 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~ 483 (579)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+ ++. ..+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777665532 1111 234466677777777888887777776542 222 2356677778888999
Q ss_pred HHHHHHHHHHHh
Q 043608 484 DEALKLFTRMRS 495 (579)
Q Consensus 484 ~~a~~~~~~m~~ 495 (579)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888887664
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=2.5e-06 Score=70.76 Aligned_cols=120 Identities=12% Similarity=0.049 Sum_probs=79.5
Q ss_pred HhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHH-HHccCCh
Q 043608 8 SLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNM-YGKCGSL 86 (579)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 86 (579)
.+...|++++|+..++..... .+.+...+..+...+...|++++|...++...+.. +.+...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CCC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCc
Confidence 355667777777777777664 34455677777777777788888888887777665 4456666666666 6667777
Q ss_pred --hhHHHhhcCCCC--C-CeeehhHHhhhhhcCCChhhHHHHHHHHHHC
Q 043608 87 --EDARMGFDKMPQ--R-NVVSWTAMIAGCSQNYQENDAIKLYIQMLQS 130 (579)
Q Consensus 87 --~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (579)
++|...+++..+ | +...+..+...+...|++++|...|++..+.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777766652 3 3456666667777777777777777777765
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.31 E-value=6e-06 Score=68.34 Aligned_cols=118 Identities=10% Similarity=0.041 Sum_probs=79.1
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHH-HHhcCCc--HH
Q 043608 412 AKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILG-YAQFGCG--DE 485 (579)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~-~~~~~~~--~~ 485 (579)
...|++++|...++...+.. +.+...+..+..+|...|++++|...+++..+ .+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666666666666544 23556666777777777777777777776652 345566666777 6677887 88
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 486 ALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 486 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
|...++++.+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887753 224567777888888888888888888888753
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.31 E-value=6.2e-06 Score=63.59 Aligned_cols=94 Identities=12% Similarity=0.001 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+......|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3455566677777777777777776652 356677777788888888888888888887753 234567778888888
Q ss_pred ccCchHHHHHHHHHHHHh
Q 043608 514 HVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~ 531 (579)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 888888888888887754
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.31 E-value=8.2e-06 Score=63.31 Aligned_cols=116 Identities=10% Similarity=-0.014 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTAC 512 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 512 (579)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34445555566666666666666665542 345566667777777777777777777777642 23455677777777
Q ss_pred hccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCCh
Q 043608 513 SHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCV 554 (579)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 554 (579)
...|++++|...+++..+. .+.+...+..+..++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 7888888888888777754 122444566666677666654
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.30 E-value=1.8e-05 Score=64.43 Aligned_cols=122 Identities=7% Similarity=-0.051 Sum_probs=72.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCc
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCG 483 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 483 (579)
+...+...|++++|...++...+... .+...+..+..++...|++++|...+++..+ .+...|..+...+...|++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 33344444444444444444443321 1344455555555666666666666655442 3455667777788888888
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHH--HHHHhhccCchHHHHHHHHHHHH
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVG--VLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
++|.+.+++..+.. +.+...+.. .+..+...|++++|...++....
T Consensus 98 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 98 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888753 223444433 33336678888888888887654
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.26 E-value=4.1e-06 Score=66.36 Aligned_cols=94 Identities=12% Similarity=0.026 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCC--C-CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFME--N-PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+..+...+.+.|++++|...|+.+. . .+...|..+..+|...|++++|+..|++..+.+ +.+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 334445555666666666666666554 2 244555666666666666666666666666542 223445556666666
Q ss_pred ccCchHHHHHHHHHHHHh
Q 043608 514 HVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~ 531 (579)
..|++++|...|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666543
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.26 E-value=2.9e-06 Score=76.31 Aligned_cols=92 Identities=9% Similarity=-0.082 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc-CCCC-ChhhHHHHHHHHHh
Q 043608 301 TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL-GKNA-DSVSWNSIIAACLQ 378 (579)
Q Consensus 301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 378 (579)
.+..+...+...|++++|...++...+.. +.+...+..+..++.+.|++++|...++.. ...| +...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444444445555555555555554442 123344444444444444444444444443 1111 23344444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 043608 379 HNQAEELFRLFSRML 393 (579)
Q Consensus 379 ~~~~~~a~~~~~~m~ 393 (579)
.|++++|...|++..
T Consensus 85 ~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 85 MESYDEAIANLQRAY 99 (281)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=6.1e-06 Score=61.98 Aligned_cols=95 Identities=18% Similarity=0.056 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC--CcchhHHH
Q 043608 467 VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP--TREHCSCV 544 (579)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 544 (579)
...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHH
Confidence 4456666777777888888888888877653 234566777777788888888888888887753 222 35567777
Q ss_pred HHHHHhc-CChhHHHHHHHhh
Q 043608 545 VDLLARA-GCVHEAEDFINQM 564 (579)
Q Consensus 545 ~~~~~~~-g~~~~A~~~~~~~ 564 (579)
..++.+. |++++|.+.+++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 7788888 8888888888777
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.26 E-value=3.4e-05 Score=59.08 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=63.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChH
Q 043608 202 VTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNAN 281 (579)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 281 (579)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~la~~~~~~~~~~ 60 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------PNNAEAWYNLGNAYYKQGDYD 60 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------cCcHHHHHHHHHHHHHhCCHH
Confidence 4456666667777777777777777776653 345556666777777777777
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 282 EAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 282 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
+|...++++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 61 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 61 EAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 7777777766542 2234455555556666666666666666665543
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.25 E-value=7e-06 Score=75.89 Aligned_cols=86 Identities=14% Similarity=-0.021 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVD 546 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 546 (579)
..|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .| +...+..+..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 344555555555555555555555555532 123445555555555555555555555555542 22 2334455555
Q ss_pred HHHhcCChhHH
Q 043608 547 LLARAGCVHEA 557 (579)
Q Consensus 547 ~~~~~g~~~~A 557 (579)
++.+.|+.++|
T Consensus 273 ~~~~~~~~~~a 283 (336)
T 1p5q_A 273 CQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555555
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.24 E-value=1.2e-05 Score=64.10 Aligned_cols=100 Identities=13% Similarity=-0.033 Sum_probs=65.2
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+.+.|++++|.+.|++..... +.+...|..+..++...|++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----------------------------P~~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----------------------------FYNVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHHccH
Confidence 44566666677777777777777777777664 45666777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
++|+..|++..... +-+...+..+..++...|++++|...|+...+..
T Consensus 87 ~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 87 QQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777776542 2234455555556666666666666666666553
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=8.3e-05 Score=67.53 Aligned_cols=218 Identities=11% Similarity=-0.023 Sum_probs=155.2
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcch-hhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHcc-C-C
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLR-SLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKC-G-S 85 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 85 (579)
+.+.+..++|+++++.+... .+-+..+++.--..+...| .+++++++++.++... +-+..+|+....++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 33445667899999999986 3334445665555566667 5999999999999877 66778888887777776 7 8
Q ss_pred hhhHHHhhcCCCCCC---eeehhHHhhhhhcCCChh--------hHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCc---
Q 043608 86 LEDARMGFDKMPQRN---VVSWTAMIAGCSQNYQEN--------DAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGS--- 151 (579)
Q Consensus 86 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~--- 151 (579)
+++++++++.+.+.+ -.+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 999999999988644 445555444454555555 8999999999874 4467788887777777775
Q ss_pred ----chhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCH--------------------HHHHHHhcccCC--------
Q 043608 152 ----VCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRI--------------------LDARNVFSGIAR-------- 199 (579)
Q Consensus 152 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~-------- 199 (579)
++++++.++++.... +.|...|+-+-..+.+.|+- ....+...++..
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 578888888887765 45667777666666665543 334444443332
Q ss_pred -CcHhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 200 -KDVTSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 200 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
++..+...++..|...|+.++|.++++.+.++
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 35667888999999999999999999998754
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=2.1e-05 Score=68.90 Aligned_cols=124 Identities=7% Similarity=-0.100 Sum_probs=62.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HhHHHHHHHHHhccC
Q 043608 339 AILTMYAKCSVLCNALLVFKELG-KNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPD--HITFNDVMGACAKMA 415 (579)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~ 415 (579)
.+...+...|++++|.++|+.+. ..|+......+...+.+.+++++|+..|+...... .|. ...+..+-.++...|
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 34445555566666666665552 22332233444445555666666666665332211 110 123444555566666
Q ss_pred ChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHHcCCHHHHHHHHhhCC
Q 043608 416 SLEMVTQLHCYITKTGLAF--DVFVMNGLMDIYIKCGSLGSARKLFNFME 463 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 463 (579)
++++|+..|++.......| ..........++.+.|+.++|..+|+++.
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666555322213 22334445555666666666666666655
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=5.5e-06 Score=74.45 Aligned_cols=95 Identities=9% Similarity=-0.106 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 043608 367 VSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIY 446 (579)
Q Consensus 367 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (579)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+... .+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 334444455555555555555555554431 12344444555555555555555555555544321 2344555555555
Q ss_pred HHcCCHHHHHHHHhhCC
Q 043608 447 IKCGSLGSARKLFNFME 463 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~ 463 (579)
...|++++|...|+...
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55556665555555544
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.20 E-value=2.4e-05 Score=62.31 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLA 549 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (579)
+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++.... -+.++..+..+..+|.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHH
Confidence 3344444555555555555555554432 123444444555555555555555555555432 1122334444555555
Q ss_pred hcCChhHHHHHHHhh
Q 043608 550 RAGCVHEAEDFINQM 564 (579)
Q Consensus 550 ~~g~~~~A~~~~~~~ 564 (579)
..|++++|...+++.
T Consensus 101 ~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 101 QXGELAEAESGLFLA 115 (148)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555544
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=9.2e-06 Score=62.74 Aligned_cols=91 Identities=9% Similarity=-0.124 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHh
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLAR 550 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (579)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+. -+.+...+..+..++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 334444444555555555555544431 123344444444555555555555555554432 11123344444455555
Q ss_pred cCChhHHHHHHHhh
Q 043608 551 AGCVHEAEDFINQM 564 (579)
Q Consensus 551 ~g~~~~A~~~~~~~ 564 (579)
.|++++|...+++.
T Consensus 85 ~~~~~~A~~~~~~a 98 (126)
T 3upv_A 85 VKEYASALETLDAA 98 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 55555555554444
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=1.7e-05 Score=60.13 Aligned_cols=93 Identities=14% Similarity=-0.044 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34445555555666666666666655532 223445555555566666666666666665543 122334555555666
Q ss_pred HhcCChhHHHHHHHhh
Q 043608 549 ARAGCVHEAEDFINQM 564 (579)
Q Consensus 549 ~~~g~~~~A~~~~~~~ 564 (579)
...|++++|.+.+++.
T Consensus 83 ~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 6666666666666555
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.18 E-value=2.7e-05 Score=71.99 Aligned_cols=144 Identities=12% Similarity=-0.007 Sum_probs=97.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
+...+..+...+.+.|++++|...|++..... |+...+ ..+.+.++- +.....+..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 45567777777777888888888887776642 221100 001111100 001456677777
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHH
Q 043608 445 IYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 521 (579)
+|.+.|++++|...++++.+ .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877763 456778888888999999999999999988853 23466788888888888998888
Q ss_pred -HHHHHHHHH
Q 043608 522 -LHLYRIMEN 530 (579)
Q Consensus 522 -~~~~~~~~~ 530 (579)
...++.|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 446666654
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=2.8e-05 Score=75.01 Aligned_cols=121 Identities=9% Similarity=-0.073 Sum_probs=57.9
Q ss_pred HHHHHhcCChHHHHHHHHHc----CCCCCh---------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCc
Q 043608 341 LTMYAKCSVLCNALLVFKEL----GKNADS---------------VSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKPD 400 (579)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~----~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~ 400 (579)
...+.+.|++++|++.|..+ +...+. .++..+...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34556677777777777665 111111 125566666777777777777766654321 1111
Q ss_pred Hh----HHHHHHHHHhccCChHHHHHHHHHHHH----cCCCC-chhHHHHHHHHHHHcCCHHHHHHHHhh
Q 043608 401 HI----TFNDVMGACAKMASLEMVTQLHCYITK----TGLAF-DVFVMNGLMDIYIKCGSLGSARKLFNF 461 (579)
Q Consensus 401 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 461 (579)
.. ..+.+-..+...|+.+.+..++..... .+..+ -..++..+...|...|++++|..++++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 11 111222233344566666666555442 11111 123334444444455555555444443
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.17 E-value=5.4e-05 Score=58.50 Aligned_cols=119 Identities=7% Similarity=-0.090 Sum_probs=75.6
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+...|++++|.+.+++..... +.+...+..+...+...|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~~a~~~~~~~~~ 62 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----------------------------PANAVYFCNRAAAYSKLGNY 62 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----------------------------CCCHHHHHHHHHHHHHhhch
Confidence 34566667777777888888888888777653 34566677777777778888
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (579)
++|.+.++...... +.+...+..+...+...|+++.|...++...+... .+...+..+..++...|+
T Consensus 63 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 63 AGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 88888887776642 22344555555666666666666666666665532 234444445555544443
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=1.6e-05 Score=61.39 Aligned_cols=103 Identities=9% Similarity=0.031 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC--CCC----hhHHHHH
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGV--SPN----LVTLVGV 508 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~l 508 (579)
.+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|++.+++.++.+. .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344566667777777777777776652 3455677777777778888888887777765321 111 2356667
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHH
Q 043608 509 LTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSC 543 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
..++...|++++|++.|++.... .|++.+...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~ 121 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKK 121 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHH
Confidence 77777888888888888887754 456554443
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.14 E-value=5.9e-05 Score=58.57 Aligned_cols=99 Identities=12% Similarity=-0.043 Sum_probs=61.2
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~~~~ 66 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----------------------------PKDAKLYSNRAACYTKLLEF 66 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----------------------------TTCHHHHHHHHHHHTTTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------CCcHHHHHHHHHHHHHhccH
Confidence 44566666777777777777777777766553 34556666666777777777
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHc
Q 043608 281 NEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKM 328 (579)
Q Consensus 281 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 328 (579)
++|...+++..+.. +.+...+..+...+...|++++|...++...+.
T Consensus 67 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 67 QLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777777666542 223444555555555566666666666655554
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.13 E-value=2.1e-05 Score=64.04 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTAC 512 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 512 (579)
...+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|+..+++..+.. +.+...|..+..++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444555555666666666666665542 245556666666667777777777777766642 22355666666677
Q ss_pred hccCchHHHHHHHHHHHHh
Q 043608 513 SHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 513 ~~~g~~~~a~~~~~~~~~~ 531 (579)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 7777777777777766654
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.10 E-value=4e-05 Score=60.52 Aligned_cols=93 Identities=19% Similarity=0.128 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHH
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLL 548 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (579)
.+..+...+.+.|++++|...|++....+ +.+...|..+..++...|++++|...|++.... -+.++..+..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 34444555666666666666666666542 224455666666666666666666666666643 122344555666666
Q ss_pred HhcCChhHHHHHHHhh
Q 043608 549 ARAGCVHEAEDFINQM 564 (579)
Q Consensus 549 ~~~g~~~~A~~~~~~~ 564 (579)
...|++++|...+++.
T Consensus 97 ~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666655
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=1.4e-05 Score=61.91 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCC--CCC----hhHHHH
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGV--SPN----LVTLVG 507 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 507 (579)
..+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555556666666666666665542 2344555555566666666666666666554321 111 345555
Q ss_pred HHHHhhccCchHHHHHHHHHHHH
Q 043608 508 VLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+..++...|++++|...+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55566666666666666666554
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.07 E-value=3.8e-05 Score=62.52 Aligned_cols=96 Identities=14% Similarity=-0.060 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHH
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVV 545 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 545 (579)
+...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|+..+++..+. -+.+...+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34567788889999999999999999999863 336778999999999999999999999999975 233466888999
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 043608 546 DLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~ 564 (579)
.+|...|++++|...+++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 9999999999999999988
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=1.9e-05 Score=60.28 Aligned_cols=96 Identities=6% Similarity=-0.152 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLL 548 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 548 (579)
+..+...+.+.|++++|+..+++..+.. +.+...|..+..++...|++++|+..+++..+. .| +...+..+..+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 4445566677777777777777777642 224556667777777777777777777777653 33 344666677777
Q ss_pred HhcCChhHHHHHHHhh-cCCCC
Q 043608 549 ARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 549 ~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
...|++++|...+++. ...|+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 7777777777777766 33443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.06 E-value=4.1e-05 Score=59.99 Aligned_cols=97 Identities=9% Similarity=-0.039 Sum_probs=66.1
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 043608 434 FDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLT 510 (579)
Q Consensus 434 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 510 (579)
.+...+..+...+...|++++|...|+...+ .+...|..+..++...|++++|...+++..+.+ +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3456666777777777777777777776652 345566677777777777777777777777643 224556677777
Q ss_pred HhhccCchHHHHHHHHHHHHh
Q 043608 511 ACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~ 531 (579)
++...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 777777777777777776643
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=4.1e-05 Score=60.87 Aligned_cols=93 Identities=10% Similarity=-0.102 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSC 543 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 543 (579)
..+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|...+++..+. .+.+...+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 104 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence 34444444555555555555555555543 233 334444555555555555555555555432 1112334444
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 043608 544 VVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 544 l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+|...|++++|...+++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555544
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.06 E-value=6.9e-05 Score=56.61 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+..+...+...|++++|...++...+ .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3445556666666777777666666542 345566667777777788888888887777652 234566777777788
Q ss_pred ccCchHHHHHHHHHHHH
Q 043608 514 HVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~ 530 (579)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888888877764
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.03 E-value=0.0074 Score=54.84 Aligned_cols=173 Identities=9% Similarity=-0.003 Sum_probs=88.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCC-ChHHHHHHHHHHH
Q 043608 213 SKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHS-NANEAMSLFSEMR 291 (579)
Q Consensus 213 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~ 291 (579)
...+..++|+++++++.... +.+..+|+.--..+...| .+++++++++.+.
T Consensus 65 ~~~e~se~AL~lt~~~L~~n----------------------------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L 116 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN----------------------------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA 116 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhC----------------------------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34445567888888887764 445566666666666666 4777777777777
Q ss_pred hCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-C-ChHHHHHHHHHc-CC-CCChh
Q 043608 292 DRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKC-S-VLCNALLVFKEL-GK-NADSV 367 (579)
Q Consensus 292 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~-~~-~~~~~ 367 (579)
.. .|. +..+++.-...+.+. + ++++++++++.+ .. +-|..
T Consensus 117 ~~--nPK----------------------------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~ 160 (349)
T 3q7a_A 117 VQ--NLK----------------------------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH 160 (349)
T ss_dssp HT--TCC----------------------------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH
T ss_pred Hh--CCC----------------------------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH
Confidence 54 332 222222222222222 2 344444444443 11 11333
Q ss_pred hHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC-------hHHHHHHHHHHHHcCC
Q 043608 368 SWNSIIAACLQHNQAE--------ELFRLFSRMLASQIKPDHITFNDVMGACAKMAS-------LEMVTQLHCYITKTGL 432 (579)
Q Consensus 368 ~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~ 432 (579)
+|+.-...+.+.+.++ ++++.++++.+.. +-|...|+.....+.+.+. ++++.+..++......
T Consensus 161 AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P 239 (349)
T 3q7a_A 161 TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP 239 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC
Confidence 4443333333333333 6666666666653 3355556655555555544 4556666666555442
Q ss_pred CCchhHHHHHHHHHHHcCC
Q 043608 433 AFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~~ 451 (579)
. |...++.+-..+.+.|+
T Consensus 240 ~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 240 H-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp T-CHHHHHHHHHHHHHTTC
T ss_pred C-CHHHHHHHHHHHHhcCC
Confidence 2 44555554444444443
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.02 E-value=6.8e-05 Score=57.72 Aligned_cols=94 Identities=14% Similarity=-0.011 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 437 FVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 437 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
..+..+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3455556667777777777777776652 345677777788888888888888888887753 224667777888888
Q ss_pred ccCchHHHHHHHHHHHHh
Q 043608 514 HVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~~ 531 (579)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888887754
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=2.6e-05 Score=60.37 Aligned_cols=94 Identities=13% Similarity=-0.001 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCC-CCC----cchhHHH
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGI-IPT----REHCSCV 544 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l 544 (579)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+...- .++ ...+..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444455555555555555555555432 223444555555555555555555555555443110 111 3344455
Q ss_pred HHHHHhcCChhHHHHHHHhh
Q 043608 545 VDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+|...|++++|.+.+++.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 55555555555555555554
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.01 E-value=2.6e-05 Score=65.81 Aligned_cols=161 Identities=9% Similarity=-0.067 Sum_probs=86.6
Q ss_pred HHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHH
Q 043608 178 IAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARI 254 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~ 254 (579)
.......|+++.+.+.++..... ....+..+...+.+.|++++|.+.|++..+.....|+.... .+.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~---- 84 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKK---- 84 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--HHHHHHH----
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--hHHHHHH----
Confidence 33445566677777666654332 34567788889999999999999999998763201100000 0000000
Q ss_pred HhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCc
Q 043608 255 LFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNV 334 (579)
Q Consensus 255 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (579)
......|..+..++.+.|++++|+..++...... +.+...+..+..++...|+++.|...++...+.. +.+.
T Consensus 85 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 156 (198)
T 2fbn_A 85 ------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNL 156 (198)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH
T ss_pred ------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcH
Confidence 0012566777778888888888888888777642 2234455555566666666666666666666553 2233
Q ss_pred hhHHHHHHHHHhcCChHH
Q 043608 335 PVCNAILTMYAKCSVLCN 352 (579)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~ 352 (579)
.++..+..++...++.++
T Consensus 157 ~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=5.1e-05 Score=58.68 Aligned_cols=87 Identities=17% Similarity=0.020 Sum_probs=43.7
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC--CCh----hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----hhHHHHHHHH
Q 043608 442 LMDIYIKCGSLGSARKLFNFMEN--PDV----VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN----LVTLVGVLTA 511 (579)
Q Consensus 442 l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~ 511 (579)
+...+...|++++|...|+.+.+ |+. ..+..+..++...|++++|...+++..+.. |+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 33445555555555555555442 322 244445555555555555555555555432 22 2344455555
Q ss_pred hhccCchHHHHHHHHHHHH
Q 043608 512 CSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~ 530 (579)
+...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.97 E-value=3.2e-05 Score=62.61 Aligned_cols=126 Identities=12% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCC----CCC-ChhH
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMEN-----PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLG----VSP-NLVT 504 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~ 504 (579)
+..+...+...|++++|...+++..+ ++ ...+..+...+...|++++|.+.+++..+.. -.+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444455555555555544431 11 1245556666677777777777776655421 011 1335
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 505 LVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT----REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 505 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..+...+...|++++|...+++..+...-..+ ...+..+...|...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666677777778888888777776643111111 235666777778888888888877765
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.97 E-value=0.00013 Score=54.38 Aligned_cols=65 Identities=6% Similarity=-0.169 Sum_probs=29.9
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChHHHHHHHHHhhcc-cchhhHHHHHHHHHHc
Q 043608 263 DLASWNALIAGVASHSNANEAMSLFSEMRDRELLP--DGLTVHSLLCACIGR-LTLYQGMQVHSYIIKM 328 (579)
Q Consensus 263 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 328 (579)
+...+..+...+...|++++|...+++..+.. +. +...+..+...+... |++++|.+.++...+.
T Consensus 39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 39 ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 34444455555555555555555555554431 11 233334444444444 4444444444444443
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=9.5e-05 Score=58.68 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=66.0
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHH
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMEN--PD----VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGV 508 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 508 (579)
+...+..+...+...|++++|...|++..+ |+ ...|..+...|...|++++|...+++..+.. +.+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 344555566666666667776666666543 44 4566667777778888888888888877652 2245677777
Q ss_pred HHHhhccCchHHHHHHHHHHHHh
Q 043608 509 LTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
..++...|++++|...|++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 77888888888888888887754
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.96 E-value=9.2e-05 Score=57.90 Aligned_cols=95 Identities=9% Similarity=-0.151 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHH
Q 043608 467 VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVD 546 (579)
Q Consensus 467 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 546 (579)
...|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. . +.+...+..+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-chhHHHHHHHHH
Confidence 3444445555555555555555555555432 123344555555555555555555555555442 1 112334445555
Q ss_pred HHHhcCChhHHHHHHHhh
Q 043608 547 LLARAGCVHEAEDFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~~A~~~~~~~ 564 (579)
+|...|++++|...+++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 555555555555555544
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00057 Score=65.75 Aligned_cols=209 Identities=7% Similarity=-0.126 Sum_probs=138.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 043608 209 IAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFS 288 (579)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 288 (579)
...+.+.|++++|++.|..+.+......+............ .....++..+...|...|++++|.+.+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRR-----------NEQETSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567889999999999999876431111000000000000 0001246778899999999999999998
Q ss_pred HHHhCC-CCCChH---HHHHHH-HHhhcccchhhHHHHHHHHHHc----CCCC-CchhHHHHHHHHHhcCChHHHHHHHH
Q 043608 289 EMRDRE-LLPDGL---TVHSLL-CACIGRLTLYQGMQVHSYIIKM----GFDS-NVPVCNAILTMYAKCSVLCNALLVFK 358 (579)
Q Consensus 289 ~m~~~g-~~p~~~---~~~~ll-~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (579)
.+...- ..++.. .....+ ..+...|+.+.+..++...... +..+ -..++..+...+...|++++|..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 876531 122222 222223 3445678899999998887653 2222 24567788999999999999999998
Q ss_pred Hc-------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc--HhHHHHHHHHHhccCChHHHHHHH
Q 043608 359 EL-------GKNA-DSVSWNSIIAACLQHNQAEELFRLFSRMLAS----QIKPD--HITFNDVMGACAKMASLEMVTQLH 424 (579)
Q Consensus 359 ~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~ 424 (579)
++ ..++ ....+..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 76 1122 2346888899999999999999999886542 22222 235566667788899999999888
Q ss_pred HHHH
Q 043608 425 CYIT 428 (579)
Q Consensus 425 ~~~~ 428 (579)
....
T Consensus 240 ~~a~ 243 (434)
T 4b4t_Q 240 FESF 243 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.93 E-value=5.9e-05 Score=63.62 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVD 546 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 546 (579)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+. .| +...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence 566677777888888888888888887752 334667777888888888888888888887754 33 4456666777
Q ss_pred HHHhcCChhHHH-HHHHhh
Q 043608 547 LLARAGCVHEAE-DFINQM 564 (579)
Q Consensus 547 ~~~~~g~~~~A~-~~~~~~ 564 (579)
++...|+.+++. ..+.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 165 CVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777666666 444444
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.86 E-value=1.5e-05 Score=60.59 Aligned_cols=82 Identities=13% Similarity=0.013 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHH
Q 043608 449 CGSLGSARKLFNFMENP------DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGL 522 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 522 (579)
.|++++|...|++..+- +...|..+...|...|++++|+..+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555566666555432 12345555556666666666666666666542 123445555666666666666666
Q ss_pred HHHHHHHHh
Q 043608 523 HLYRIMENE 531 (579)
Q Consensus 523 ~~~~~~~~~ 531 (579)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665543
No 175
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.86 E-value=5.1e-06 Score=76.48 Aligned_cols=119 Identities=8% Similarity=0.050 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcC
Q 043608 69 DVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSG 148 (579)
Q Consensus 69 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 148 (579)
.+.+|..+..+..+.+++.+|++.|=+. .|+..|..++.+..+.|.+++-+..+.-.++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 4566777888888888888887766443 456678888888888888888888887776653 233444678888888
Q ss_pred CCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC
Q 043608 149 LGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA 198 (579)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 198 (579)
.+++.+..+++. .|+..-...+.+-|...|.++.|.-+|..+.
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 888776655542 3555555666777777777777777776554
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.85 E-value=0.0003 Score=54.16 Aligned_cols=89 Identities=18% Similarity=0.087 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-h---hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----cchhH
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPN-L---VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT----REHCS 542 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 542 (579)
..+...+...|++++|...|++..+.. |+ . ..+..+..++...|++++|...+++..+. .|+ ...+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~ 80 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHH
Confidence 344556667777777777777777642 32 2 35666677777777777777777777754 233 34466
Q ss_pred HHHHHHHhcCChhHHHHHHHhh
Q 043608 543 CVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+..+|.+.|++++|...++++
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777777777777776
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.84 E-value=3.8e-05 Score=58.64 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=66.9
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCC--C-CeeehhHHhhhhhc
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQ--R-NVVSWTAMIAGCSQ 113 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 113 (579)
.+..+...+.+.|++++|...++..++.. +.+...+..+..++...|++++|+..|++..+ | +...+..+...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44455666777788888888888877766 55677777777777778888888887777652 3 45567777777777
Q ss_pred CCChhhHHHHHHHHHHC
Q 043608 114 NYQENDAIKLYIQMLQS 130 (579)
Q Consensus 114 ~~~~~~a~~~~~~~~~~ 130 (579)
.|++++|...|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888877654
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=7.2e-05 Score=60.42 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC----CCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL----GVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555566666666666666665432 1111 1335666777777788888888887776653
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.78 E-value=8.3e-05 Score=60.27 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCC---------------------ChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMENP---------------------DVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
...+......+.+.|++++|...|....+. +...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566677777778888877777765421 12456666667777777777777777777
Q ss_pred hCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 495 SLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 495 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+.. +.+...|..+..++...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 642 224556667777777777777777777777643
No 180
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.78 E-value=5.8e-06 Score=76.12 Aligned_cols=452 Identities=10% Similarity=0.075 Sum_probs=252.3
Q ss_pred CchhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHH
Q 043608 1 FSNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMY 80 (579)
Q Consensus 1 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (579)
.|+.|-++..+.++..+|++-|-+. .|+..|..++.+..+.|.++.-...+....+.. .++..=+.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 3778888889999999998887432 377788899999999999999998888777653 3445556888999
Q ss_pred HccCChhhHHHhhcCCCC-----------------------CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcc
Q 043608 81 GKCGSLEDARMGFDKMPQ-----------------------RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQF 137 (579)
Q Consensus 81 ~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 137 (579)
++.+++.+-++++..--. .++..|..|...+.+.|++..|.+.-++ .-++.
T Consensus 127 Ak~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK------Ans~k 200 (624)
T 3lvg_A 127 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK------ANSTR 200 (624)
T ss_dssp HTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT------CCSSC
T ss_pred HhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh------cCChh
Confidence 999988876665533210 1223344444555555555555443222 23667
Q ss_pred cHHHHHHHhcCCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccC---CCcHhhHHHHHHHHHh
Q 043608 138 TFGSIIKACSGLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIA---RKDVTSWGSMIAAFSK 214 (579)
Q Consensus 138 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~ 214 (579)
||..+-.+|...+++..|.-.--.++-. ..-...++..|-..|.+++-+.+++.-. +.....|+-|.-.|++
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 8888888888888887776554333322 2222345666778888888777777543 3355566666666665
Q ss_pred cCChHHHHHHHHHHHhc-CCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 043608 215 LGYELEALCHFNEMLHH-GAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDR 293 (579)
Q Consensus 215 ~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 293 (579)
- ++++..+.++..-.+ ++ | -++.+| .....|..++-.|.+-.+++.|.... .++
T Consensus 276 Y-~PeKlmEHlklf~sriNi--p------Kvirac-------------E~ahLW~ElvfLY~~ydE~DnA~ltM---i~h 330 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNI--P------KVLRAA-------------EQAHLWAELVFLYDKYEEYDNAIITM---MNH 330 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCC--T------TTHHHH-------------TTTTCHHHHHHHHHHHTCHHHHHHTT---TSC
T ss_pred c-CHHHHHHHHHHHHHhccH--H------HHHHHH-------------HHHhhHHHHHHHHhcchhHHHHHHHH---HhC
Confidence 4 456665555443221 11 0 001111 23445666666677666666554322 211
Q ss_pred CCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHH
Q 043608 294 ELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSII 373 (579)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~ 373 (579)
+|+..-...+-....+..+.+---+.+...+ .-.+...+.|+.++...=|..++.++|+..+.-|=+..|-.-
T Consensus 331 --~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL----~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~- 403 (624)
T 3lvg_A 331 --PTDAWKEGQFKDIITKVANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRS- 403 (624)
T ss_dssp --HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHT----TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTS-
T ss_pred --ChhhccHHHHHHHHHHcchHHHHHHHHHHHH----HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHH-
Confidence 1111111111222233333332222222222 334445677777777777777777777776433222111000
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHH
Q 043608 374 AACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLG 453 (579)
Q Consensus 374 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 453 (579)
.+..+...+-+.+.++.-. .-|..+...-|..|-.-.....|.++- + .+-......-...|.+.++++
T Consensus 404 ---Vq~~N~~aVNeAln~L~IE--EEDy~~LR~SId~ydNFD~i~LA~rLE----k---HeL~eFRrIAA~LYkkn~rw~ 471 (624)
T 3lvg_A 404 ---VQNHNNKSVNESLNNLFIT--EEDYQALRTSIDAYDNFDNISLAQRLE----K---HELIEFRRIAAYLFKGNNRWK 471 (624)
T ss_dssp ---CCCSCCHHHHHHHHHHHHH--TTCCHHHHHTTSSCCCSCTTHHHHHHH----T---CSSHHHHHHHHHHHHTTCHHH
T ss_pred ---HHHhhHHHHHHHHHHHHhh--hhhHHHHHHHHHHhccccHHHHHHHHh----h---CchHHHHHHHHHHHHhcccHH
Confidence 0112222233333332111 123333444444444444444444432 1 112333334455678888898
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHH
Q 043608 454 SARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHL 524 (579)
Q Consensus 454 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 524 (579)
++..+.++=. .|.-.|.....+|+.+-|.++++-..+.| +...|...+-.|...=+++-++++
T Consensus 472 qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 472 QSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 8877655432 22223444556788888888888887755 556677777777777777776665
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=2.4e-05 Score=58.59 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=74.9
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-------c
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-------R 538 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~ 538 (579)
+...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++++|+..+++..+ ..|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHH
Confidence 34567778888889999999999999988863 33567888889999999999999999999884 3555 4
Q ss_pred chhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 539 EHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
..+..+..++...|+.+.|...+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 456667777778888888877776663
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.75 E-value=0.00016 Score=69.88 Aligned_cols=137 Identities=12% Similarity=-0.054 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhc
Q 043608 401 HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQF 480 (579)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 480 (579)
...+..+...+.+.|++++|...|++..+........ .-+... .........|..+..+|.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~----~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-------------SEKESK----ASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-------------CHHHHH----HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-------------ChHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666777777777776666533221100 000000 00000023444444455555
Q ss_pred CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHH
Q 043608 481 GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAE 558 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 558 (579)
|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+ +.| +...+..+..++.+.|+.++|.
T Consensus 331 g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 331 REYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554432 11334444555555555555555555555542 122 2334444444555555444443
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.75 E-value=1.3e-05 Score=77.95 Aligned_cols=120 Identities=8% Similarity=-0.071 Sum_probs=78.4
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK 82 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (579)
..+-..+.+.|++++|++.|+++.+. .+.+..++..+..++.+.|++++|.+.+++.++.. +.+...+..+..+|..
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34455667778888888888877775 34456677777777788888888888888877765 4556677777777777
Q ss_pred cCChhhHHHhhcCCCC--C-CeeehhHHhhh--hhcCCChhhHHHHHH
Q 043608 83 CGSLEDARMGFDKMPQ--R-NVVSWTAMIAG--CSQNYQENDAIKLYI 125 (579)
Q Consensus 83 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~--~~~~~~~~~a~~~~~ 125 (579)
.|++++|++.|++..+ | +...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777766542 2 23344444444 556677777777666
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.73 E-value=4.6e-05 Score=74.06 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=61.0
Q ss_pred HHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHH
Q 043608 447 IKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLH 523 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 523 (579)
.+.|++++|.+.+++..+ .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|.+
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344555555555554431 234556666666666666666666666666642 2234566666666667777777777
Q ss_pred HHHHHHHhhCCCC-CcchhHHHHHH--HHhcCChhHHHHHHH
Q 043608 524 LYRIMENEYGIIP-TREHCSCVVDL--LARAGCVHEAEDFIN 562 (579)
Q Consensus 524 ~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 562 (579)
.+++..+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77666653 22 23344444444 566667777776666
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.72 E-value=0.012 Score=53.18 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=75.8
Q ss_pred ChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCchhHHHH
Q 043608 365 DSVSWNSIIAACLQHN--QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMAS-LEMVTQLHCYITKTGLAFDVFVMNG 441 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (579)
+..+|+.-...+...+ .+++++..++++.+.. +-|...|+.-...+...|. ++++.+.++.+.+..+. |...|+.
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~ 184 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHY 184 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 4444444444444444 2555555555555542 2244444444444444444 35555555555554422 3344444
Q ss_pred HHHHHHHc--------------CCHHHHHHHHhhCC--C-CChhhHHHHHHHHHhc-----------CCcHHHHHHHHHH
Q 043608 442 LMDIYIKC--------------GSLGSARKLFNFME--N-PDVVSWSSLILGYAQF-----------GCGDEALKLFTRM 493 (579)
Q Consensus 442 l~~~~~~~--------------~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m 493 (579)
....+.+. +.++++++.++... . .|...|+-+-..+.+. +.++++++.++++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 33333332 23445555555444 2 2344444333333332 3356777777777
Q ss_pred HhCCCCCCh-hHHHHHH---HHhhccCchHHHHHHHHHHHH
Q 043608 494 RSLGVSPNL-VTLVGVL---TACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 494 ~~~~~~p~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~ 530 (579)
.+. .||. .++..++ .+....|..+++..++.++.+
T Consensus 265 le~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 265 QEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred Hhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 764 4543 1222211 122234566666777777664
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.69 E-value=8.5e-05 Score=56.28 Aligned_cols=83 Identities=8% Similarity=0.105 Sum_probs=44.9
Q ss_pred cCCcHHHHHHHHHHHhCCC-CC-ChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHH
Q 043608 480 FGCGDEALKLFTRMRSLGV-SP-NLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 480 ~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 557 (579)
.|++++|+..|++..+.+. .| +...+..+..++...|++++|...+++..+. .+-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4556666666666665421 12 2345556666666666666666666666643 122344555566666666666666
Q ss_pred HHHHHhh
Q 043608 558 EDFINQM 564 (579)
Q Consensus 558 ~~~~~~~ 564 (579)
...+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00017 Score=67.45 Aligned_cols=138 Identities=7% Similarity=-0.016 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC
Q 043608 402 ITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFG 481 (579)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 481 (579)
..+..+...+.+.|++++|...+++..+.-. .. ......+++. .....+...|..+..+|.+.|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~----------~~~~~~~~~~----~~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GS----------RAAAEDADGA----KLQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HH----------HHHSCHHHHG----GGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cC----------ccccChHHHH----HHHHHHHHHHHHHHHHHHhcc
Confidence 3455666667777777777777766654210 00 0000000000 011123456777888888889
Q ss_pred CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhHHHH
Q 043608 482 CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHEAED 559 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 559 (579)
++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .| +...+..+..++.+.++.+++.+
T Consensus 288 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 288 DWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888753 224667888888888999999999999888864 34 44566667777777777776654
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.66 E-value=0.01 Score=53.59 Aligned_cols=181 Identities=8% Similarity=-0.009 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC-HHHHHHH
Q 043608 382 AEELFRLFSRMLASQIKPDHITFNDVMGACAKMA--SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS-LGSARKL 458 (579)
Q Consensus 382 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 458 (579)
+++++..++.+.... +-+..+|+.-...+...+ .++++..+++.+.+.... |...|+.-.-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 578888888888763 446677777666666667 489999999999987643 77778777777778888 5899999
Q ss_pred HhhCCC---CChhhHHHHHHHHHhc--------------CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc------
Q 043608 459 FNFMEN---PDVVSWSSLILGYAQF--------------GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV------ 515 (579)
Q Consensus 459 ~~~~~~---~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------ 515 (579)
++.+.+ .|...|+.....+.+. +.++++++.+++..... +-|...|+.+-..+...
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 888874 4667787766665554 45788999999998853 23556666554444443
Q ss_pred -----CchHHHHHHHHHHHHhhCCCCCcchhHHHHH-----HHHhcCChhHHHHHHHhh-cCCCC
Q 043608 516 -----GLVEEGLHLYRIMENEYGIIPTREHCSCVVD-----LLARAGCVHEAEDFINQM-ACDAD 569 (579)
Q Consensus 516 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~-~~~~~ 569 (579)
+.++++++.++++.+. .|+. .|..+.. ..-..|..+++..++.++ ...|.
T Consensus 247 ~~~~~~~l~~el~~~~elle~---~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL---EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHHHHHHHHHhh---Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 4588999999999864 5664 3332222 222467788999999888 34443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.61 E-value=9.6e-05 Score=68.27 Aligned_cols=150 Identities=11% Similarity=0.004 Sum_probs=84.5
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhc
Q 043608 401 HITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQF 480 (579)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 480 (579)
...+..+...+.+.|++++|...|++..+.. |+... +...++.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence 4556677788889999999999999877653 22221 122333334333322 23678888999999
Q ss_pred CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHH-HHhcCChhHHH
Q 043608 481 GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDL-LARAGCVHEAE 558 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~g~~~~A~ 558 (579)
|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+ +.|+ ...+..|..+ ....+..+++.
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998853 33567889999999999999999999998874 3454 4455555555 23456778888
Q ss_pred HHHHhh-cCCCC
Q 043608 559 DFINQM-ACDAD 569 (579)
Q Consensus 559 ~~~~~~-~~~~~ 569 (579)
..+.+| ...|+
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 888888 33343
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.00056 Score=66.12 Aligned_cols=142 Identities=8% Similarity=-0.014 Sum_probs=94.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD 444 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 444 (579)
....+..+...+.+.|++++|...|++..+.. |+...+ . .+...+ .. ......|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~----~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESKA----SE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHHH----HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHHH----HH----HHHHHHHHHHHH
Confidence 45578888999999999999999999988742 221100 0 000000 00 012345666777
Q ss_pred HHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHH
Q 043608 445 IYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEE 520 (579)
Q Consensus 445 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 520 (579)
+|.+.|++++|...++++.+ .+...|..+..+|...|++++|...|++..+. .| +...+..+..++.+.|+.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 77788888888877777663 45667777888888888888888888888875 44 35577777777888888777
Q ss_pred HHH-HHHHHH
Q 043608 521 GLH-LYRIME 529 (579)
Q Consensus 521 a~~-~~~~~~ 529 (579)
+.+ .+..|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 654 455444
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00011 Score=54.78 Aligned_cols=94 Identities=23% Similarity=0.250 Sum_probs=74.4
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCC------hhHHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPD------VVLQNH 75 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 75 (579)
|..+-..+.+.|++++|++.|++.... .+.++..+..+..++...|++++|...++..++.. +.+ ...+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 345667788899999999999998885 44567788888888999999999999999998765 333 556667
Q ss_pred HHHHHHccCChhhHHHhhcCCCC
Q 043608 76 ILNMYGKCGSLEDARMGFDKMPQ 98 (579)
Q Consensus 76 l~~~~~~~g~~~~A~~~~~~~~~ 98 (579)
+..++...|+++.|.+.++++++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHhHhhhHhHHHHhHH
Confidence 77777888888888888877653
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.52 E-value=0.00051 Score=54.11 Aligned_cols=93 Identities=17% Similarity=-0.027 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-------------hhHHHHHHHHhhccCchHHHHHHHHHHHHh----h
Q 043608 470 WSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-------------LVTLVGVLTACSHVGLVEEGLHLYRIMENE----Y 532 (579)
Q Consensus 470 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 532 (579)
+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++..+. .
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344556677778888888888887764 333 227888888889999999999998888752 1
Q ss_pred CCCCC-cchh----HHHHHHHHhcCChhHHHHHHHhh
Q 043608 533 GIIPT-REHC----SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 533 ~~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+.|+ ...| .....++...|++++|+..|++.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 22554 3466 77888999999999999999887
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.51 E-value=0.00068 Score=54.77 Aligned_cols=95 Identities=7% Similarity=-0.107 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHc--------C---------CCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC
Q 043608 402 ITFNDVMGACAKMASLEMVTQLHCYITKT--------G---------LAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN 464 (579)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 464 (579)
..+......+.+.|++++|...|....+. . -+.+...+..+..+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555666777777777777777776654 1 011235666677777777777777777776652
Q ss_pred ---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 465 ---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 465 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
.+...|..+..+|...|++++|...|++..+.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34566777777777777777777777777764
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.50 E-value=0.00046 Score=54.35 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhC-----CCCCC-hhHH----HHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSL-----GVSPN-LVTL----VGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888888888999999999999888873 11565 4477 88899999999999999999998853
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.49 E-value=0.00018 Score=66.36 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=47.8
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcc------------------cHHHHHHHhhcchhhhhhhhHHHHHHHhC
Q 043608 4 DYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPS------------------TYAGLISACSSLRSLQLGRKVHDHILLSK 65 (579)
Q Consensus 4 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 65 (579)
.+-..+.+.|++++|+..|+++... .|+.. .|..+..++.+.|++++|...++..++..
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3445667778888888888877664 12211 34444444445555555555555555443
Q ss_pred CCCChhHHHHHHHHHHccCChhhHHHhhcCCC
Q 043608 66 CQPDVVLQNHILNMYGKCGSLEDARMGFDKMP 97 (579)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 97 (579)
+.+...+..+..+|...|++++|+..|++..
T Consensus 261 -p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 261 -EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444555555555555555554443
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.44 E-value=0.00044 Score=50.42 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+...|..+...|...|++++|+..|++..+.+ +.+...|..+..+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567777778888888888888888887753 224557777888888888888888888877653
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.42 E-value=0.00081 Score=62.80 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 043608 366 SVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDI 445 (579)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (579)
...+..+...+.+.|++++|...|++..+. .++.. .....+.+... -+.+...+..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~~--------~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAKL--------QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGGG--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHHH--------HHHHHHHHHHHHHH
Confidence 456788888999999999999999988763 11100 00011111000 01245667778888
Q ss_pred HHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHH
Q 043608 446 YIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEG 521 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 521 (579)
|.+.|++++|...++++.+ .+...|..+..+|...|++++|++.|++..+. .| +...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887764 34667788888899999999999999998885 44 455666777777777776666
Q ss_pred HH
Q 043608 522 LH 523 (579)
Q Consensus 522 ~~ 523 (579)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.36 E-value=0.00032 Score=67.73 Aligned_cols=119 Identities=13% Similarity=-0.040 Sum_probs=77.9
Q ss_pred HHHcCCHHHHHHHHhhCC-------CCC----hhhHHHHHHHHHhcCCcHHHHHHHHHHHhC---CCC---CC-hhHHHH
Q 043608 446 YIKCGSLGSARKLFNFME-------NPD----VVSWSSLILGYAQFGCGDEALKLFTRMRSL---GVS---PN-LVTLVG 507 (579)
Q Consensus 446 ~~~~~~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~---p~-~~~~~~ 507 (579)
+...|++++|..++++.. .++ ..+++.|...|...|++++|+.++++..+. -.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566666666655443 122 245677777888888888888887776532 112 22 347888
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhh--CCCCC----cchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 508 VLTACSHVGLVEEGLHLYRIMENEY--GIIPT----REHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 508 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
|...|..+|++++|..++++..+-. -+-|+ ..+...+..++...|.+++|..++.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888766421 12233 234456667777888888888888877
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.35 E-value=0.0046 Score=48.10 Aligned_cols=109 Identities=12% Similarity=-0.009 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH----cCCHHHHH
Q 043608 381 QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIK----CGSLGSAR 456 (579)
Q Consensus 381 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 456 (579)
++++|..+|++..+.| .|+.. +-..+...+..++|.+.+++..+.| ++..+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566777777766665 22222 4445555556666666666666553 44445555555554 44555555
Q ss_pred HHHhhCC-CCChhhHHHHHHHHHh----cCCcHHHHHHHHHHHhCC
Q 043608 457 KLFNFME-NPDVVSWSSLILGYAQ----FGCGDEALKLFTRMRSLG 497 (579)
Q Consensus 457 ~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 497 (579)
+.|++.. ..++..+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5554443 2334444444444444 444455555555444443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.34 E-value=0.00034 Score=52.66 Aligned_cols=64 Identities=13% Similarity=-0.036 Sum_probs=41.6
Q ss_pred ChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 466 DVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
+...+..+...|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666677777777777777766642 22345666667777777777777777776664
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.33 E-value=0.0037 Score=48.68 Aligned_cols=85 Identities=4% Similarity=-0.139 Sum_probs=39.1
Q ss_pred HHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhc----cC
Q 043608 344 YAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQ----HNQAEELFRLFSRMLASQIKPDHITFNDVMGACAK----MA 415 (579)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~ 415 (579)
|...+.+++|.+.|+..-..-+...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCc
Confidence 33333344444444433222244444444444444 455555555555555543 23334444444444 45
Q ss_pred ChHHHHHHHHHHHHcC
Q 043608 416 SLEMVTQLHCYITKTG 431 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~ 431 (579)
+.++|...+++..+.|
T Consensus 112 d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 112 NEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5555555555555544
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.32 E-value=0.0011 Score=63.92 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC----------CC-hhhHHHHHHHHHhcCCcHHHHHHHHHHHh-----CCC-CC
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN----------PD-VVSWSSLILGYAQFGCGDEALKLFTRMRS-----LGV-SP 500 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~-~p 500 (579)
+++.|..+|...|++++|..++++..+ |+ ..+++.|...|...|++++|+.++++..+ .|. .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444445555555555444444331 22 23456666667777777777777666543 221 12
Q ss_pred C-hhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 501 N-LVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 501 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+ ..+...+..++...|.+++|..++.++++.
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 235566777777888888888888888764
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.27 E-value=0.0014 Score=46.40 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-CcchhHHHHH
Q 043608 468 VSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP-TREHCSCVVD 546 (579)
Q Consensus 468 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~ 546 (579)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .| +...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 345556666777777777777777776642 224556667777777777777777777777653 23 3344555555
Q ss_pred HHHhc
Q 043608 547 LLARA 551 (579)
Q Consensus 547 ~~~~~ 551 (579)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.25 E-value=0.0012 Score=49.55 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHh
Q 043608 484 DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 563 (579)
+.|+..+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..+|...|++++|...+++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45788888888753 335778889999999999999999999999875 233456788899999999999999999998
Q ss_pred h
Q 043608 564 M 564 (579)
Q Consensus 564 ~ 564 (579)
.
T Consensus 79 a 79 (115)
T 2kat_A 79 G 79 (115)
T ss_dssp H
T ss_pred H
Confidence 7
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.06 E-value=0.0024 Score=45.22 Aligned_cols=74 Identities=14% Similarity=0.034 Sum_probs=39.2
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHH
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYG 81 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (579)
+-..+.+.|++++|+..|++.... .+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344555556666666666655553 22334455555555566666666666666655544 334444444444443
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.03 E-value=0.048 Score=54.00 Aligned_cols=166 Identities=8% Similarity=0.006 Sum_probs=109.4
Q ss_pred hHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC--
Q 043608 350 LCNALLVFKEL-GKNA-DSVSWNSIIAACLQHNQ----------AEELFRLFSRMLASQIKPDHITFNDVMGACAKMA-- 415 (579)
Q Consensus 350 ~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-- 415 (579)
-++|++.++.+ ...| +...|+.--..+...|+ ++++++.++++.+.. +-+...|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 34556666554 2222 44456655555555555 788888888887763 335667777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHhc-----------
Q 043608 416 SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCG-SLGSARKLFNFMEN---PDVVSWSSLILGYAQF----------- 480 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----------- 480 (579)
+++++.+.++++.+.... +...|+.-..++.+.| ..+++.+.++++.+ .|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 668888888888877643 6677777777777777 78888888888875 3556676666665542
Q ss_pred ---CCcHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchH
Q 043608 481 ---GCGDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVE 519 (579)
Q Consensus 481 ---~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 519 (579)
+.++++++.+++.... .| |...|..+-..+.+.++.+
T Consensus 203 ~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 4457777777777764 34 4556666666666655533
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.91 E-value=0.025 Score=56.00 Aligned_cols=169 Identities=12% Similarity=0.026 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHCCCCCc-HhHHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHc
Q 043608 381 QAEELFRLFSRMLASQIKPD-HITFNDVMGACAKMAS----------LEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKC 449 (579)
Q Consensus 381 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 449 (579)
..++|++.++++... .|+ ...|+.--..+...++ ++++.+.++.+.+...+ +..+|+.-.-++.+.
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 456789999999886 444 4455554455555555 89999999999987644 777888878888888
Q ss_pred C--CHHHHHHHHhhCCC---CChhhHHHHHHHHHhcC-CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc--------
Q 043608 450 G--SLGSARKLFNFMEN---PDVVSWSSLILGYAQFG-CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHV-------- 515 (579)
Q Consensus 450 ~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------- 515 (579)
+ +++++.+.++++.+ .+...|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 8 77999999999884 56677888777888888 8899999999998864 23566777666655442
Q ss_pred ------CchHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHhcCChhH
Q 043608 516 ------GLVEEGLHLYRIMENEYGIIP-TREHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 516 ------g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 556 (579)
+.++++++.+++.... .| +...|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCccc
Confidence 5689999999888854 45 45566666666666666444
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.80 E-value=0.0012 Score=51.84 Aligned_cols=87 Identities=10% Similarity=0.004 Sum_probs=54.3
Q ss_pred HHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCc----------HHHHHHHHHHHhCCCCCC-hhHHHHHHHHh
Q 043608 447 IKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCG----------DEALKLFTRMRSLGVSPN-LVTLVGVLTAC 512 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~ 512 (579)
.+.+.+++|.+.++...+ .+...|..+..++...+++ ++|+..|++.++. .|+ ...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 345566777777766652 3556666666666666554 4777777777764 443 45667777777
Q ss_pred hccC-----------chHHHHHHHHHHHHhhCCCCCc
Q 043608 513 SHVG-----------LVEEGLHLYRIMENEYGIIPTR 538 (579)
Q Consensus 513 ~~~g-----------~~~~a~~~~~~~~~~~~~~~~~ 538 (579)
...| ++++|+..|++..+. .|+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~ 124 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDN 124 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTC
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh---CCCC
Confidence 6653 677777777776643 5553
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.80 E-value=0.0021 Score=50.46 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=61.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH----------HHHHHHHhhCCC--C-ChhhHHHHHHHHHh
Q 043608 413 KMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL----------GSARKLFNFMEN--P-DVVSWSSLILGYAQ 479 (579)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 479 (579)
+.+.+++|.+.++...+... .+...+..+..++...+++ ++|...|++..+ | +...|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 44566777777777776653 2666666666677666554 477777777663 3 45667777777776
Q ss_pred cC-----------CcHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 480 FG-----------CGDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 480 ~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
.| ++++|++.|++..+. .|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 53 678888888887773 56655554333
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.68 E-value=0.011 Score=42.77 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=54.1
Q ss_pred cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCCh
Q 043608 201 DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNA 280 (579)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 280 (579)
+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..++...|++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~a~~~lg~~~~~~g~~ 57 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD----------------------------PDYVGTYYHLGKLYERLDRT 57 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------TTCTHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHHHcCCH
Confidence 56678888888999999999999999988875 45667888899999999999
Q ss_pred HHHHHHHHHHHh
Q 043608 281 NEAMSLFSEMRD 292 (579)
Q Consensus 281 ~~a~~~~~~m~~ 292 (579)
++|.+.|++..+
T Consensus 58 ~~A~~~~~~al~ 69 (100)
T 3ma5_A 58 DDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.0056 Score=58.04 Aligned_cols=86 Identities=10% Similarity=0.034 Sum_probs=64.1
Q ss_pred hcCCcHHHHHHHHHHHhC---CCCCC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhh--CCCCC----cchhHHHH
Q 043608 479 QFGCGDEALKLFTRMRSL---GVSPN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEY--GIIPT----REHCSCVV 545 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~ 545 (579)
..|++++|+.++++..+. -+.|+ ..+++.|..+|..+|++++|..++++...-+ -+.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888888877642 12233 3478889999999999999999998876432 12222 33688899
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 043608 546 DLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~~ 564 (579)
..|...|++++|..++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999998877
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.045 Score=57.38 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=59.4
Q ss_pred HHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChh
Q 043608 39 AGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQEN 118 (579)
Q Consensus 39 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (579)
..++..+.+.|.++.|.++.+. . ..-.......|++++|.++.+.+. +...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 4555556666666666554421 1 111233445688888888777664 3467788888888888888
Q ss_pred hHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHH
Q 043608 119 DAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHV 162 (579)
Q Consensus 119 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 162 (579)
.|.++|.++.. |..+...+...|+.+...++.+..
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888887643 334444444455555444443333
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.47 E-value=0.059 Score=48.99 Aligned_cols=74 Identities=15% Similarity=0.045 Sum_probs=54.9
Q ss_pred CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhH
Q 043608 464 NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCS 542 (579)
Q Consensus 464 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 542 (579)
..+...|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence 3566677777766777788888888888888864 67667777777788888888888888877743 56665543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.43 E-value=0.011 Score=56.23 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=65.3
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCC---CCCC----hhHHHHHHHHhhccCchHHHHHHHHHHHHhh--CCCCC----cch
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLG---VSPN----LVTLVGVLTACSHVGLVEEGLHLYRIMENEY--GIIPT----REH 540 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~ 540 (579)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.+..+|..+|++++|+.++++...-+ -+.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888887532 2232 3478888888888899999998888776432 12222 336
Q ss_pred hHHHHHHHHhcCChhHHHHHHHhh
Q 043608 541 CSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 541 ~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
+..|...|...|++++|..++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 778888899999999999888776
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.41 E-value=0.025 Score=51.35 Aligned_cols=133 Identities=8% Similarity=-0.038 Sum_probs=81.1
Q ss_pred CCCCcccHHHHHHHhhc-----chhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHc---cCC--------hhhHHHhhc
Q 043608 31 IRIRPSTYAGLISACSS-----LRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGK---CGS--------LEDARMGFD 94 (579)
Q Consensus 31 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~--------~~~A~~~~~ 94 (579)
.+.+...|...+++... ..+..+|..+|++.++.. |.....+..+..+|.- .+. ...+.+-..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 45677788888877542 345688999999999886 4445555544444431 110 111222111
Q ss_pred CCC--CCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 043608 95 KMP--QRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSE 166 (579)
Q Consensus 95 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 166 (579)
.+. ..+...|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++....+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 111 2345556665555555677777777777777764 565556566666777777777777777777654
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.40 E-value=0.018 Score=44.70 Aligned_cols=82 Identities=12% Similarity=0.068 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccC---chHHHHHHHHHHHHhhCCCC--CcchhHHHHHHHHhcCChhHHHH
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVG---LVEEGLHLYRIMENEYGIIP--TREHCSCVVDLLARAGCVHEAED 559 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 559 (579)
.+.+-|.+..+.|. ++..+...+.+++++.+ +.++++.+++...+. . .| ..+.+..|.-+|.+.|++++|++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444444444432 45555555555555555 445666666665554 2 12 23344445555566666666666
Q ss_pred HHHhh-cCCCC
Q 043608 560 FINQM-ACDAD 569 (579)
Q Consensus 560 ~~~~~-~~~~~ 569 (579)
+++.+ ...|+
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 66655 34444
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.40 E-value=0.0091 Score=42.99 Aligned_cols=82 Identities=16% Similarity=0.034 Sum_probs=58.6
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcc-cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHcc
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPS-TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKC 83 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (579)
....+.+.|++++|+..|+++... .+.+.. .+..+..++...|++++|...|+..++.. +.+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------
Confidence 345677888999999999988875 344556 77778888888899999999999888776 334444321
Q ss_pred CChhhHHHhhcCCC
Q 043608 84 GSLEDARMGFDKMP 97 (579)
Q Consensus 84 g~~~~A~~~~~~~~ 97 (579)
+.+.++...|++..
T Consensus 75 ~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 KMVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666666654
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.29 E-value=0.015 Score=41.83 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=56.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhc
Q 043608 473 LILGYAQFGCGDEALKLFTRMRSLGVSPNLV-TLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARA 551 (579)
Q Consensus 473 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (579)
....+.+.|++++|++.+++..+.. +.+.. .+..+..++...|++++|...|++..+. .|+..... . .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~--~-----~ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL---NPDSPALQ--A-----R 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHH--H-----H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHH--H-----H
Confidence 3456778888899999988888753 22456 7778888888889999999999888864 34432211 0 1
Q ss_pred CChhHHHHHHHhh
Q 043608 552 GCVHEAEDFINQM 564 (579)
Q Consensus 552 g~~~~A~~~~~~~ 564 (579)
+.+.+|...+++.
T Consensus 75 ~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 KMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHH
Confidence 5566777777665
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.28 E-value=0.097 Score=54.84 Aligned_cols=76 Identities=18% Similarity=0.113 Sum_probs=43.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcH
Q 043608 405 NDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 484 (579)
..++..+.+.|..+.|.++.+. |. .-+......|++++|.++.+.+ .+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 4455555556666665554421 10 1123345567777777766554 34456777777777777777
Q ss_pred HHHHHHHHHH
Q 043608 485 EALKLFTRMR 494 (579)
Q Consensus 485 ~a~~~~~~m~ 494 (579)
.|.+.|.++.
T Consensus 699 ~A~~~y~~~~ 708 (814)
T 3mkq_A 699 LAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 7777776653
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.17 E-value=0.26 Score=36.76 Aligned_cols=140 Identities=12% Similarity=0.070 Sum_probs=88.8
Q ss_pred HcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHH
Q 043608 275 ASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNAL 354 (579)
Q Consensus 275 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (579)
.-.|..++..++..+.... .+..-++.+|--....-+-+...++++.+-+ -.|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 3457777777777776653 2344455555444444444444444443322 1121 2344555555
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 043608 355 LVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLA 433 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 433 (579)
..+-.++. +.......+..+...|.-++..+++.++... .+|++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55544433 4556677788888888888888888886442 4778888888889999999999999999888888754
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.03 E-value=0.023 Score=41.41 Aligned_cols=67 Identities=10% Similarity=-0.133 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHhCC------CCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc
Q 043608 469 SWSSLILGYAQFGCGDEALKLFTRMRSLG------VSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR 538 (579)
Q Consensus 469 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 538 (579)
.+..+...+.+.|+++.|...+++..+.- -.+....+..+..++.+.|+++.|...+++..+. .|+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l---~P~~ 79 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL---DPEH 79 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCC
Confidence 34566777778888888888888776531 1123556777888888888888888888887743 5554
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.094 Score=41.82 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=91.7
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHH
Q 043608 409 GACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALK 488 (579)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 488 (579)
......|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|....+ +..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 3445678999999887765 3678899999999999999999999998764 4455556667788877777
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 489 LFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
+-+.....| -++.-...+...|+++++.++|.+.. ..|.. .-....-|-.+.|.++.++++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 766666554 23444455667899999999986543 22211 112223567888999998885
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.89 E-value=0.12 Score=36.47 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHHHhcCC---cHHHHHHHHHHHhCCCCC-ChhHHHHHHHHhhccCchHHHHHHHHHHHH
Q 043608 466 DVVSWSSLILGYAQFGC---GDEALKLFTRMRSLGVSP-NLVTLVGVLTACSHVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 466 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 530 (579)
|...+..+..++...++ .++|..++++..+. .| +......+...+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666666654433 57888888888775 34 455677777777888888888888888875
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.84 E-value=0.033 Score=39.47 Aligned_cols=73 Identities=12% Similarity=-0.072 Sum_probs=55.4
Q ss_pred CCChhHHHHHHHHhhccCc---hHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChhHh
Q 043608 499 SPNLVTLVGVLTACSHVGL---VEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQM-ACDADIVVW 573 (579)
Q Consensus 499 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~ 573 (579)
+.|...+..+..++...++ .++|..++++..+. .|+ +.....+...+.+.|++++|...|+++ ...|+ ..|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3466777777877764444 79999999999964 444 456777889999999999999999999 44555 444
Q ss_pred hh
Q 043608 574 KS 575 (579)
Q Consensus 574 ~~ 575 (579)
-.
T Consensus 79 ~~ 80 (93)
T 3bee_A 79 RV 80 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.79 E-value=0.022 Score=53.97 Aligned_cols=81 Identities=5% Similarity=-0.024 Sum_probs=41.1
Q ss_pred ccchhhHHHHHHHHHHc---CCCC----CchhHHHHHHHHHhcCChHHHHHHHHHc--------C-CCCCh-hhHHHHHH
Q 043608 312 RLTLYQGMQVHSYIIKM---GFDS----NVPVCNAILTMYAKCSVLCNALLVFKEL--------G-KNADS-VSWNSIIA 374 (579)
Q Consensus 312 ~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~-~~~~~-~~~~~l~~ 374 (579)
.|++++|..++++.++. -+.| ...+++.+..+|...|++++|+.++++. | ..|++ .+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34556666665555432 1111 1234555556666666666666555543 1 12222 23555666
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 043608 375 ACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m 392 (579)
.|...|++++|..++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 666666666666665554
No 226
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.75 E-value=0.029 Score=53.25 Aligned_cols=94 Identities=16% Similarity=0.037 Sum_probs=68.9
Q ss_pred HHHHhcCCCHHHHHHHhcccCC-------C----cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 043608 178 IAMYTKFDRILDARNVFSGIAR-------K----DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFS 246 (579)
Q Consensus 178 ~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~ 246 (579)
+..+...|++++|+.++++..+ + -..+++.+...|...|++++|+.++++..+.-
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~-------------- 359 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY-------------- 359 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH--------------
Confidence 4556678899999988876532 1 23588999999999999999999999876431
Q ss_pred HHHHHHHHHhhcCCCC-ChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 043608 247 ACSNFARILFNEIDSP-DLASWNALIAGVASHSNANEAMSLFSEMRD 292 (579)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 292 (579)
++++... .| ...+++.|...|...|++++|..++++..+
T Consensus 360 ------~~~lg~~-Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 360 ------RIFFPGS-HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ------HHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHcCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0001111 22 245688899999999999999999987753
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.72 E-value=0.43 Score=35.63 Aligned_cols=139 Identities=12% Similarity=0.028 Sum_probs=94.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 043608 212 FSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMR 291 (579)
Q Consensus 212 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 291 (579)
+.-.|.+++..++..+.... .+..-||-+|.-....-+-+-..++++..-
T Consensus 17 ~ildG~v~qGveii~k~~~s------------------------------sni~E~NW~ICNiiD~a~C~y~v~vLd~IG 66 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS------------------------------STKSEYNWFICNLLESIDCRYMFQVLDKIG 66 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH------------------------------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHG
T ss_pred HHHhhhHHHHHHHHHHHcCC------------------------------CCccccceeeeecchhhchhHHHHHHHHHh
Confidence 44568888888888887764 456667777766666556565666665543
Q ss_pred hCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHc--CCCCChhhH
Q 043608 292 DRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKEL--GKNADSVSW 369 (579)
Q Consensus 292 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~ 369 (579)
. --|.. .-+++......+-. . ..+...+...++.+...|+-++-.+++.++ ..+|++...
T Consensus 67 k---iFDis----------~C~NlKrVi~C~~~---~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l 128 (172)
T 1wy6_A 67 S---YFDLD----------KCQNLKSVVECGVI---N--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASIL 128 (172)
T ss_dssp G---GSCGG----------GCSCTHHHHHHHHH---T--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHH
T ss_pred h---hcCcH----------hhhcHHHHHHHHHH---h--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHH
Confidence 2 22211 11222222222211 1 224556677788888999999999999984 555788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043608 370 NSIIAACLQHNQAEELFRLFSRMLASQIK 398 (579)
Q Consensus 370 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 398 (579)
-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 129 ~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 129 VAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 89999999999999999999999999865
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.51 Score=37.63 Aligned_cols=74 Identities=9% Similarity=-0.040 Sum_probs=37.6
Q ss_pred CCCcchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 148 GLGSVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.++..++-+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHH
Confidence 345555555554433 3445556666666666666666666655443 33344444445555554444444
Q ss_pred HHhcC
Q 043608 228 MLHHG 232 (579)
Q Consensus 228 m~~~~ 232 (579)
...+|
T Consensus 86 A~~~g 90 (177)
T 3mkq_B 86 AQTRE 90 (177)
T ss_dssp HHHTT
T ss_pred HHHCc
Confidence 44333
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.87 E-value=4.3 Score=42.11 Aligned_cols=257 Identities=12% Similarity=0.053 Sum_probs=121.9
Q ss_pred HhhcccchhhHHHHHHHHHHcCCCCCchhH--HHHHHHHHhcCChHHHHHHHHHc-CCC---------CChhhHHHHHHH
Q 043608 308 ACIGRLTLYQGMQVHSYIIKMGFDSNVPVC--NAILTMYAKCSVLCNALLVFKEL-GKN---------ADSVSWNSIIAA 375 (579)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~-~~~---------~~~~~~~~l~~~ 375 (579)
+....|+.+++..++......+-..+..+- ..+.-+....|..+++..++... ... +.+..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 445667777777666654432111122222 22233344555555666655543 111 111122223333
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCcHhHHH--HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH--HHHHcC
Q 043608 376 CLQHNQ-AEELFRLFSRMLASQIKPDHITFN--DVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMD--IYIKCG 450 (579)
Q Consensus 376 ~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 450 (579)
++-.|. -+++...+..+.... .+...... .+...+...|+.+....++..+.+.. +..+...+.- ++.-.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 333332 234555555555431 11111122 22233456677777777777666532 2233333333 333567
Q ss_pred CHHHHHHHHhhCCC-CChhh-HH---HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHH
Q 043608 451 SLGSARKLFNFMEN-PDVVS-WS---SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLY 525 (579)
Q Consensus 451 ~~~~A~~~~~~~~~-~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 525 (579)
+.+.+..+++.+.. .+... |. ++.-+|+..|+.....++++.+.+.. ..+..-...+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77777766666542 33222 22 23345667777766666888877641 223333334444455566666666666
Q ss_pred HHHHHhhCCCCCcchhHHHHHHHHhcCC-hhHHHHHHHhhcCCCChh
Q 043608 526 RIMENEYGIIPTREHCSCVVDLLARAGC-VHEAEDFINQMACDADIV 571 (579)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~ 571 (579)
+.+... ..|....-..+.-+....|. ..+|.+++.++...+|..
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 655432 22322222222222333333 267788888886555543
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.67 E-value=0.12 Score=38.52 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHH---HHHHHHHHHHhhCCCC--CcchhHHHHHHHHhcCChhHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEE---GLHLYRIMENEYGIIP--TREHCSCVVDLLARAGCVHEA 557 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 557 (579)
...+.+-|.+....|. |+..+-..+.+++++...... ++.+++.+.+. + .| ..+....|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444455554444442 555555566666666665444 66666665543 1 12 233444556666677777777
Q ss_pred HHHHHhh-cCCCCh
Q 043608 558 EDFINQM-ACDADI 570 (579)
Q Consensus 558 ~~~~~~~-~~~~~~ 570 (579)
.++++.+ ...|+.
T Consensus 94 ~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 7777766 445543
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.65 E-value=4.9 Score=41.73 Aligned_cols=151 Identities=14% Similarity=0.033 Sum_probs=86.5
Q ss_pred HHHhcCChHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHhHH--HHHHHHHhccCChH
Q 043608 343 MYAKCSVLCNALLVFKELGKNADSVS--WNSIIAACLQHNQAEELFRLFSRMLASQIKPDHITF--NDVMGACAKMASLE 418 (579)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~ 418 (579)
.+.-.|+.+....+++.+....+... .-.+.-++...|+.+.+..+.+.+... ..|-...- ..+.-+|+..|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 34456676666666665422212222 333344455778888888888888764 12222222 23345677888888
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhcCCc-HHHHHHHHHHH
Q 043608 419 MVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---PDVVSWSSLILGYAQFGCG-DEALKLFTRMR 494 (579)
Q Consensus 419 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~ 494 (579)
...+++..+.+.. ..++.-...+.-++...|+.+.+.++++.+.+ |.+..-.++.-+....|.. .+++.++..+.
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 8887888877542 22333333333344456777777777765542 3333333444555555544 67888888887
Q ss_pred h
Q 043608 495 S 495 (579)
Q Consensus 495 ~ 495 (579)
.
T Consensus 657 ~ 657 (963)
T 4ady_A 657 K 657 (963)
T ss_dssp T
T ss_pred c
Confidence 5
No 232
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.40 E-value=2.7 Score=37.62 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=81.5
Q ss_pred HHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHH----HHHHHCCCCCCcccHHHHHHHhc
Q 043608 72 LQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLY----IQMLQSGVMPGQFTFGSIIKACS 147 (579)
Q Consensus 72 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~g~~p~~~~~~~li~~~~ 147 (579)
.|.++...|.+++++++|++++- .-...+.+.|+...|-++- +.+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45677778889999999999762 2233455667776655544 66677888899888888887776
Q ss_pred CCCcch-hHHHHHHH----HHHhc--cCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhc
Q 043608 148 GLGSVC-LGRQLHAH----VIKSE--HGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKL 215 (579)
Q Consensus 148 ~~~~~~-~a~~~~~~----~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (579)
....-+ .=..+.+. ..+.| ..-|......+...|.+.+++.+|+.-|-.-.++++..+..++.-+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 555322 11223333 33333 2345666777777888888888887776432222334554444444333
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.29 E-value=0.42 Score=34.52 Aligned_cols=65 Identities=17% Similarity=0.027 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHhhCCC----------CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 043608 435 DVFVMNGLMDIYIKCGSLGSARKLFNFMEN----------PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 435 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 501 (579)
+...+..+...+.+.++++.|...++...+ +....+..+..+|.+.|+++.|...++++.+. .|+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 445556666777777777777766665542 12345666667777777777777777777663 454
No 234
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.16 E-value=2.9 Score=37.12 Aligned_cols=134 Identities=11% Similarity=0.011 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHH----HHHHHHCCCCCCcccHHHHHHHh
Q 043608 71 VLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKL----YIQMLQSGVMPGQFTFGSIIKAC 146 (579)
Q Consensus 71 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~g~~p~~~~~~~li~~~ 146 (579)
..|.++...|.+++++++|++++.. -...+.+.|+...|-++ ++.+.+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3466777788889999999987622 23345666777666554 56666778888888888888776
Q ss_pred cCCCcch-hHHHHHHHHH----Hhc--cCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhc
Q 043608 147 SGLGSVC-LGRQLHAHVI----KSE--HGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKL 215 (579)
Q Consensus 147 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (579)
.....-+ .-.++++.++ +.| ..-|+..+..+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 6533211 2233334433 332 2235677778888888888888888876533222455555444444443
No 235
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.91 E-value=0.28 Score=38.06 Aligned_cols=48 Identities=10% Similarity=-0.047 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC---ChHHHHHHHHHHHHcC
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMA---SLEMVTQLHCYITKTG 431 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 431 (579)
..+.+-|.+....|. ++..+...+..++++.+ +.+++..+++...+..
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~ 65 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG 65 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 344455555544443 45555556666666665 4556666666666543
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.90 E-value=0.53 Score=36.05 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 481 GCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 481 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
++.++|.++|+.+++.+-+ -...|......-.++|++..|.+++.+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 4555555555555443111 13344444444445555555555555554
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.76 E-value=0.6 Score=40.67 Aligned_cols=62 Identities=13% Similarity=-0.001 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHh-----cCCcHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhc-cCchHHHHHHHHHHHHh
Q 043608 468 VSWSSLILGYAQ-----FGCGDEALKLFTRMRSLGVSP--NLVTLVGVLTACSH-VGLVEEGLHLYRIMENE 531 (579)
Q Consensus 468 ~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 531 (579)
..|..+...|.+ -|+.++|.+.|++.++. .| +..++....+.++. .|+.+++.+.+++....
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 345555555665 37777777777777774 44 25566666676666 37777777777777754
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.57 E-value=0.32 Score=38.09 Aligned_cols=35 Identities=6% Similarity=-0.078 Sum_probs=26.6
Q ss_pred cchhHHHHHHHHhcCChhHHHHHHHhhcCCCChhH
Q 043608 538 REHCSCVVDLLARAGCVHEAEDFINQMACDADIVV 572 (579)
Q Consensus 538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 572 (579)
.+.-..+..+|.+.|++++|+.+++.++.+--+.-
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 34455688899999999999999999965544333
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.52 E-value=5.3 Score=37.94 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=23.8
Q ss_pred CCchhHHHHHHHHHHHc--CCHHHHHHHHhhCCCCC
Q 043608 433 AFDVFVMNGLMDIYIKC--GSLGSARKLFNFMENPD 466 (579)
Q Consensus 433 ~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~ 466 (579)
-++...+..++.+|... .+++.+.+.|.....++
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 34667788888888764 45777778787766544
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.38 E-value=0.51 Score=41.11 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=85.3
Q ss_pred cCCHHHHHHHHhhCCCCC--hhhHHHHHHH-HHh--cCC------cHHHHHHHHHHHhCCCCCC---hhHHHHHHHHhhc
Q 043608 449 CGSLGSARKLFNFMENPD--VVSWSSLILG-YAQ--FGC------GDEALKLFTRMRSLGVSPN---LVTLVGVLTACSH 514 (579)
Q Consensus 449 ~~~~~~A~~~~~~~~~~~--~~~~~~l~~~-~~~--~~~------~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~ 514 (579)
.++..+-.+.+.++...+ ...|..++.+ +.. .|+ ...|...+++..+. .|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 344444555555555333 3456555543 333 233 36788888888884 566 5578888888888
Q ss_pred c-----CchHHHHHHHHHHHHhhCCCCC--cchhHHHHHHHHhc-CChhHHHHHHHhh---cCC--CChhHhhhh
Q 043608 515 V-----GLVEEGLHLYRIMENEYGIIPT--REHCSCVVDLLARA-GCVHEAEDFINQM---ACD--ADIVVWKSL 576 (579)
Q Consensus 515 ~-----g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~---~~~--~~~~~~~~l 576 (579)
. |+.++|.+.|++.... .|+ ..++..+.+.+++. |+.++|.+.+++. +.. |+....|++
T Consensus 212 vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 4 9999999999999964 563 67788889999885 9999999999998 223 666655543
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.77 E-value=0.87 Score=34.05 Aligned_cols=72 Identities=8% Similarity=0.010 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHhhccCc---hHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCChh
Q 043608 499 SPNLVTLVGVLTACSHVGL---VEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADIV 571 (579)
Q Consensus 499 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~ 571 (579)
.|+..|--.+.+++++..+ ..+++.+++.+.+. +-.-..+.+..|.-++.+.|++++|+++.+.+ ...|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 4455554455555554443 34456666666554 21112334445556666666666666666666 4455543
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.58 E-value=4.7 Score=38.28 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHc----C----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043608 348 SVLCNALLVFKEL----G----KNADSVSWNSIIAACLQHNQAEELFRLFSRMLA 394 (579)
Q Consensus 348 ~~~~~a~~~~~~~----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 394 (579)
|+++.|++.+..+ . ..........++..|...++++...+.+.-+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677776665443 1 112334466677777777777777666665544
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.25 E-value=2 Score=32.67 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhh
Q 043608 543 CVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.|.-++.|.|++++|+++.+.+
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444555555555555444
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.96 E-value=11 Score=37.53 Aligned_cols=425 Identities=8% Similarity=-0.055 Sum_probs=201.6
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcc-cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChh
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPS-TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLE 87 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 87 (579)
..+.|++..+..+...+.. .+..+. .|..+...+. ....++...++++-. +.+.....-..-+..+.+.+++.
T Consensus 16 a~~~~~~~~~~~l~~~l~~---~pL~~yl~y~~l~~~l~-~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKD---YPLYPYLEYRQITDDLM-NQPAVTVTNFVRANP--TLPPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTT---STTHHHHHHHHHHHTGG-GCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhhcC---CCcHHHHHHHHHHhCcc-cCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCCHH
Confidence 4556788777777665532 222111 3333222221 112333333333211 11222344456667788889999
Q ss_pred hHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHHHHHHHHhcc
Q 043608 88 DARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQLHAHVIKSEH 167 (579)
Q Consensus 88 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (579)
..+..+.. ...+...-.....+....|+..+|....+.+-..| ...+.....++..+.+.| .
T Consensus 90 ~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g----------------~ 151 (618)
T 1qsa_A 90 GLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG----------------K 151 (618)
T ss_dssp HHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT----------------C
T ss_pred HHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC----------------C
Confidence 99998877 43344444556667777898888888777776655 223444444544444333 3
Q ss_pred CCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHH
Q 043608 168 GSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSA 247 (579)
Q Consensus 168 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~ 247 (579)
..+...+. -+......|+...|..+...+..........++.... ++..+.......
T Consensus 152 lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~------------------- 208 (618)
T 1qsa_A 152 QDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT------------------- 208 (618)
T ss_dssp SCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-------------------
T ss_pred CCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-------------------
Confidence 22222222 2345556677777777766663222222222222221 122222222110
Q ss_pred HHHHHHHHhhcCCCCChhh---HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChHHH----HHHHHHhhcccchhhHHH
Q 043608 248 CSNFARILFNEIDSPDLAS---WNALIAGVASHSNANEAMSLFSEMRDRELLPDGLTV----HSLLCACIGRLTLYQGMQ 320 (579)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~ 320 (579)
.++... +...+.-+.+ .+.+.|...+......+. .+.... ..+.......+...++..
T Consensus 209 -------------~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~ 273 (618)
T 1qsa_A 209 -------------GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (618)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred -------------CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 111111 1111222222 266777777777654331 222221 222223333442334444
Q ss_pred HHHHHHHcCCCCCchhHHHHHHHHHhcCChHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 043608 321 VHSYIIKMGFDSNVPVCNAILTMYAKCSVLCNALLVFKELGKNA--DSVSWNSIIAACLQHNQAEELFRLFSRMLAS--- 395 (579)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 395 (579)
.+....... .+.....-.+....+.|+++.|...|+.+...+ .....--+..++...|+.++|..+|+.+...
T Consensus 274 ~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~f 351 (618)
T 1qsa_A 274 WRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGF 351 (618)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSH
T ss_pred HHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCh
Confidence 444433322 233333344444456688888888888875542 1222333455666778888888887776532
Q ss_pred ---------CCCC-------c---Hh-----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 396 ---------QIKP-------D---HI-----TFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 396 ---------~~~p-------~---~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
|.++ + .. .-..-+..+...|....|...+..+.+. .+......+.......|.
T Consensus 352 Yg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~ 428 (618)
T 1qsa_A 352 YPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQW 428 (618)
T ss_dssp HHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Confidence 1110 0 00 0111223445556666666666655542 122333344444556666
Q ss_pred HHHHHHHHhhCCCCC------hhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 452 LGSARKLFNFMENPD------VVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 452 ~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
.+.+..........+ +..|...+..+.+.-.++..+-.---..++++.|
T Consensus 429 ~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 429 WDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 666665554443222 1234455555555444544433322233444444
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.83 E-value=0.55 Score=36.75 Aligned_cols=60 Identities=8% Similarity=-0.076 Sum_probs=46.8
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhcCCCCCc-------ccHHHHHHHhhcchhhhhhhhHHHHHHH
Q 043608 4 DYVSSLCKQNLYNEALVAYDFSQNNTNIRIRP-------STYAGLISACSSLRSLQLGRKVHDHILL 63 (579)
Q Consensus 4 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 63 (579)
.-++.+...|.++.|+.+.+.+....+..++. .++..+..++...|++..|...|++.++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34677888999999999999877654445553 2566777888999999999999999754
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.19 E-value=0.86 Score=46.14 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=39.1
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 474 ILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 474 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
...+...|+++.|+++.++.... .|+ -.+|..|..+|...|+++.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34456678888888888887774 565 447888888888888888888777655
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.00 E-value=8 Score=34.30 Aligned_cols=124 Identities=11% Similarity=-0.002 Sum_probs=73.8
Q ss_pred hcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCC
Q 043608 182 TKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDS 261 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 261 (579)
...|++=+|.+. |.++..-|.+.+++++|.+++..-..
T Consensus 24 I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~ga~------------------------------- 61 (312)
T 2wpv_A 24 IKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQGAL------------------------------- 61 (312)
T ss_dssp HHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------
T ss_pred hhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHHH-------------------------------
Confidence 345666666655 45566777778888888877755322
Q ss_pred CChhhHHHHHHHHHcCCChHHHHH----HHHHHHhCCCCCChHHHHHHHHHhhcccchh-hHHHHHHHHH----HcCC--
Q 043608 262 PDLASWNALIAGVASHSNANEAMS----LFSEMRDRELLPDGLTVHSLLCACIGRLTLY-QGMQVHSYII----KMGF-- 330 (579)
Q Consensus 262 ~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~-- 330 (579)
.+.+.|+...|-+ +++...+.+++++......++..+..-...+ .-..+++.++ +.|-
T Consensus 62 -----------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~ 130 (312)
T 2wpv_A 62 -----------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYK 130 (312)
T ss_dssp -----------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCT
T ss_pred -----------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCC
Confidence 2344555544443 4555566677888777777776655432211 1223333333 2221
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 043608 331 DSNVPVCNAILTMYAKCSVLCNALLVFK 358 (579)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (579)
.-++.....+...|.+.|++.+|...|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 2366677778888888888888887765
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.98 E-value=1.2 Score=31.26 Aligned_cols=73 Identities=15% Similarity=0.257 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHH
Q 043608 482 CGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFI 561 (579)
Q Consensus 482 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 561 (579)
+.-+..+-+..+....+-|++......+++|-+.+|+..|.++++-++.+ ..+...+|..+++ +-.-++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH---------HHhhHH
Confidence 34466677777777888899999999999999999999999999988865 3334456665543 344555
Q ss_pred Hhhc
Q 043608 562 NQMA 565 (579)
Q Consensus 562 ~~~~ 565 (579)
++++
T Consensus 94 ~ELG 97 (109)
T 1v54_E 94 NELG 97 (109)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 5554
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.24 E-value=4.1 Score=31.28 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=39.8
Q ss_pred HcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC
Q 043608 448 KCGSLGSARKLFNFME---NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSP 500 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 500 (579)
..++.++|.++|+.+. +.-...|-....--.++|+...|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3477888888888774 2225566666666778999999999999999876554
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.72 E-value=1.5 Score=30.75 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=24.6
Q ss_pred CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 465 PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
|++....+.+++|.+.+++..|+++++-.+.+ +.+...+|..++
T Consensus 43 P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 43 PEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 66666666666666666666666666665543 223333444443
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.43 E-value=3.9 Score=41.45 Aligned_cols=54 Identities=15% Similarity=-0.070 Sum_probs=47.2
Q ss_pred HHHhhccCchHHHHHHHHHHHHhhCCCCC-cchhHHHHHHHHhcCChhHHHHHHHhhc
Q 043608 509 LTACSHVGLVEEGLHLYRIMENEYGIIPT-REHCSCVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 509 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
+..|...|+++-|+.+-++.... .|+ ..+|..|..+|...|+++.|+-.++.+|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44577899999999999998853 565 6699999999999999999999999996
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.27 E-value=2 Score=40.05 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCCcchhHHH
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMEN----EYGIIPTREHCSCV 544 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 544 (579)
..++..+...|++++|+..++.+.... +.+...+..++.++...|+..+|++.|+.+.+ ..|+.|++.+-...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345566777888888888888877652 34667888888888888888888888887654 34888877665433
No 253
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.04 E-value=1.6 Score=32.52 Aligned_cols=46 Identities=9% Similarity=-0.148 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccCChHH---HHHHHHHHHH
Q 043608 383 EELFRLFSRMLASQIKPDHITFNDVMGACAKMASLEM---VTQLHCYITK 429 (579)
Q Consensus 383 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~ 429 (579)
..+.+-|.+....|. |+..+-..+..++.+..+... +..++..+.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~ 66 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP 66 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 334444444433332 455555555555555554433 4445544443
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.72 E-value=13 Score=40.40 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043608 337 CNAILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRM 392 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 392 (579)
...++..+...+..+.+.++..-.... ...--.+..++...|++++|...|++.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~--~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSD--PIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCC--HHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCC--cHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344556666677777766655544443 233344556677788888888888764
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.01 E-value=14 Score=32.99 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=51.1
Q ss_pred HHHHHhCCCCCChHHHHHHHHHhhcccchh-hHHHHHHHH----HHcC--CCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 287 FSEMRDRELLPDGLTVHSLLCACIGRLTLY-QGMQVHSYI----IKMG--FDSNVPVCNAILTMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 287 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (579)
++.+.+.++++|......++..+.....-+ .-..+.+.+ .+.| ..-++.....+...|.+.+++.+|...|-
T Consensus 82 vevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i- 160 (336)
T 3lpz_A 82 VDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV- 160 (336)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-
Confidence 355555667777766666666555443211 112222222 2223 23356677778888888888888888774
Q ss_pred cCCCCChhhHHHHHHHHHhc
Q 043608 360 LGKNADSVSWNSIIAACLQH 379 (579)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~ 379 (579)
.+..++...+..++.-+...
T Consensus 161 lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 161 LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTHHHHHHHHHHHHHHT
T ss_pred hcCCchHHHHHHHHHHHHHh
Confidence 34443445565555444443
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.45 E-value=1.8 Score=32.43 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=49.4
Q ss_pred CChhhHHHHHHHHHhcCCc---HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcc
Q 043608 465 PDVVSWSSLILGYAQFGCG---DEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
|...+--.+.+++++..+. .+++.++++..+.+..-....+-.|.-++.+.|++++|+++.+.+.+ +.|+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~N~ 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERNNK 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTTCH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCCCH
Confidence 4444555556677766543 57888888888764111244666778889999999999999998884 466643
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.41 E-value=2.8 Score=39.03 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHH
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 283 (579)
+...++..+...|+.++|...+..+.... +-+...|..+|.++.+.|+..+|
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~----------------------------P~~E~~~~~lm~al~~~Gr~~~A 224 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH----------------------------PYREPLWTQLITAYYLSDRQSDA 224 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34456777888999999999988887764 56778899999999999999999
Q ss_pred HHHHHHHHh-----CCCCCChHHH
Q 043608 284 MSLFSEMRD-----RELLPDGLTV 302 (579)
Q Consensus 284 ~~~~~~m~~-----~g~~p~~~~~ 302 (579)
++.|+.... .|+.|...+-
T Consensus 225 l~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 225 LGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHH
Confidence 999988754 4788876553
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.25 E-value=2.6 Score=29.35 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=58.5
Q ss_pred hhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHH
Q 043608 50 SLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQ 129 (579)
Q Consensus 50 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (579)
.-++|..+-+.+...+ . ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~-~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG-Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTT-C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4567777777777655 2 33333344466778999999999999999999999987765 467888888888878877
Q ss_pred CC
Q 043608 130 SG 131 (579)
Q Consensus 130 ~g 131 (579)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.02 E-value=2.8 Score=31.24 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHH
Q 043608 483 GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFIN 562 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 562 (579)
.-+..+-+..+...++-|++......+++|-+.+|+..|.++|+-.+.+ ..+...+|..+++ +-.-+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq---------ElkPtl~ 137 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ---------ELRPTLN 137 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH---------HHhhHHH
Confidence 3455666666667778888888888888888888888888888888764 3344556665543 4445556
Q ss_pred hhc
Q 043608 563 QMA 565 (579)
Q Consensus 563 ~~~ 565 (579)
+++
T Consensus 138 ELG 140 (152)
T 2y69_E 138 ELG 140 (152)
T ss_dssp HHT
T ss_pred HhC
Confidence 654
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.79 E-value=3.4 Score=39.04 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCC------CChhhHHHHHHHHHhcCCcHHHHHHHHHHH
Q 043608 438 VMNGLMDIYIKCGSLGSARKLFNFMEN------PDVVSWSSLILGYAQFGCGDEALKLFTRMR 494 (579)
Q Consensus 438 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 494 (579)
+...+.+.|.+.|+++.|.+.+.++.. .-...+-..++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555666666666666666665542 112344445555566666666666655543
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.29 E-value=6.7 Score=27.38 Aligned_cols=78 Identities=10% Similarity=0.012 Sum_probs=57.2
Q ss_pred cchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043608 151 SVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLH 230 (579)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 230 (579)
.-++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555554443 33333334556788999999999999999999999887765 477888888888888888
Q ss_pred cC
Q 043608 231 HG 232 (579)
Q Consensus 231 ~~ 232 (579)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 87
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.20 E-value=3 Score=31.70 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHhcCC---cHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCc
Q 043608 465 PDVVSWSSLILGYAQFGC---GDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTR 538 (579)
Q Consensus 465 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 538 (579)
|+..+--.+.++++++.+ ..+++.++++....+..-.....-.|.-++.+.|++++|+++.+.+.+. .|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCc
Confidence 455555556667776664 4578888888877532212335556777889999999999999988853 6654
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.03 E-value=17 Score=39.47 Aligned_cols=142 Identities=12% Similarity=0.036 Sum_probs=81.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----------------------
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---------------------- 464 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------- 464 (579)
++..+...+..+.+.++... .+.++...-.+..+|...|++++|.++|++...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555555555443322 122333333455566677777777777766531
Q ss_pred ----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCh----hHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 465 ----PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNL----VTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 465 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
.-..-|..++..+.+.|.++.+.++-+...+..-+-+. ..|..+.+++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 01123556667777778888888777766654211111 14667777888888888887777666532 22
Q ss_pred CcchhHHHHHHHHhcCChhH
Q 043608 537 TREHCSCVVDLLARAGCVHE 556 (579)
Q Consensus 537 ~~~~~~~l~~~~~~~g~~~~ 556 (579)
-...+..|+..++..|..++
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 34456666666666655443
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.88 E-value=7.1 Score=27.30 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHHHhccCCChhHHHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043608 151 SVCLGRQLHAHVIKSEHGSHLIAQNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLH 230 (579)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 230 (579)
.-++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45556555555555443 33333334556788999999999999999999999887765 467888888888888888
Q ss_pred cC
Q 043608 231 HG 232 (579)
Q Consensus 231 ~~ 232 (579)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 77
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.51 E-value=25 Score=32.46 Aligned_cols=127 Identities=9% Similarity=-0.042 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhcccchhhHHHHHHHHHHcC-CCC---CchhHHHHHHHHHhcC-ChHHHHHHHHHc----CCCCChhhH-
Q 043608 300 LTVHSLLCACIGRLTLYQGMQVHSYIIKMG-FDS---NVPVCNAILTMYAKCS-VLCNALLVFKEL----GKNADSVSW- 369 (579)
Q Consensus 300 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~----~~~~~~~~~- 369 (579)
.....+...|.+.|+.++..+++......= ..+ .......+++.+.... ..+.-.++..+. .. +-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ--EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 345556666677777777666666553321 011 2233445555555432 223233333222 11 11122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh-----HHHHHHHHHhccCChHHHHHHHHHHH
Q 043608 370 -----NSIIAACLQHNQAEELFRLFSRMLASQIKPDHI-----TFNDVMGACAKMASLEMVTQLHCYIT 428 (579)
Q Consensus 370 -----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~ 428 (579)
..++..|...|++.+|.+++.++.+.--..|.. .+..-+..|...+++.++...+....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 145666667777777777766665531111211 23333455566667777766666655
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.20 E-value=4.3 Score=30.30 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=36.0
Q ss_pred HHHHHHhhCC----CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHH
Q 043608 454 SARKLFNFME----NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVL 509 (579)
Q Consensus 454 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 509 (579)
+..+-++.+. -|++....+.+++|.+.+++..|+++|+-.+.+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 4444444443 277777888888888888888888888777654 344444565554
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.71 E-value=13 Score=25.98 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 043608 416 SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRS 495 (579)
Q Consensus 416 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 495 (579)
..++|..+-+-+...+- ...+--.-+..+.+.|++++|..+.+...-||...|-+|.. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566655555554432 22222222344667888888888888888888888876654 366766777777767666
Q ss_pred CC
Q 043608 496 LG 497 (579)
Q Consensus 496 ~~ 497 (579)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.70 E-value=27 Score=30.11 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=9.7
Q ss_pred HHHHHcCCHHHHHHHHh
Q 043608 444 DIYIKCGSLGSARKLFN 460 (579)
Q Consensus 444 ~~~~~~~~~~~A~~~~~ 460 (579)
...++.|+.+-+..+++
T Consensus 224 ~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33445566666666665
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.14 E-value=69 Score=31.80 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 043608 174 QNALIAMYTKFDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEALCHFNEMLHHGA 233 (579)
Q Consensus 174 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 233 (579)
-+..+..+.+.+++......+.. ...+...-.....+....|+..+|....+.+-..|.
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~ 133 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence 34556677778889888887776 444555566677778888998888888877776663
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.45 E-value=33 Score=27.92 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=40.6
Q ss_pred cCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 480 FGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 480 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
.+...++..+|..|..+|+-.. ...|......+...|++.+|.++|+.-.+. +-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 3445678888888888777654 446777777778888888888888877765 5555
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.50 E-value=4.6 Score=34.60 Aligned_cols=61 Identities=11% Similarity=-0.051 Sum_probs=47.0
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcc
Q 043608 475 LGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTRE 539 (579)
Q Consensus 475 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 539 (579)
....+.|++++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+. .|+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---Cchhh
Confidence 44667889999999888888763 446666778888899999999999999888754 55543
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.85 E-value=36 Score=29.30 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=27.6
Q ss_pred HHHHHHccCChhhHHHhhcCCCCCCee----ehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCC
Q 043608 76 ILNMYGKCGSLEDARMGFDKMPQRNVV----SWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPG 135 (579)
Q Consensus 76 l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 135 (579)
.+...++.|+++-...+++.-..++.. .++ .+...+..|+.+ +++.+.+.|..|+
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 344455677777777777665433221 222 333344455543 4444445554443
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.74 E-value=6 Score=33.94 Aligned_cols=117 Identities=7% Similarity=-0.059 Sum_probs=76.4
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCC--CChhHHHHHHHHHHcc
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQ--PDVVLQNHILNMYGKC 83 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 83 (579)
+..+.+.|++++|++....-.+. .|.|...-..++..++-.|++++|..-++...+.... +....|..+|.+=.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~-- 79 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ-- 79 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH--
Confidence 45678899999999999887773 6777788888999999999999999999988876521 12223444443322
Q ss_pred CChhhHHHhhcCCCCCC----eeeh-hHHhhhh--hcCCChhhHHHHHHHHHHC
Q 043608 84 GSLEDARMGFDKMPQRN----VVSW-TAMIAGC--SQNYQENDAIKLYIQMLQS 130 (579)
Q Consensus 84 g~~~~A~~~~~~~~~~~----~~~~-~~l~~~~--~~~~~~~~a~~~~~~~~~~ 130 (579)
.. .++|.--..|. +..| ..++.+. ...|+.++|.++-.+..+.
T Consensus 80 --~R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 --AR--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --HH--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HH--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11 13343333221 1223 3444443 3468889988888887654
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.48 E-value=22 Score=34.01 Aligned_cols=119 Identities=10% Similarity=0.051 Sum_probs=69.1
Q ss_pred eehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHH-------HHHHhcCCCcchhHHHHHHHHHHhccCCCh---
Q 043608 102 VSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGS-------IIKACSGLGSVCLGRQLHAHVIKSEHGSHL--- 171 (579)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~-------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 171 (579)
..+|.+++.|...+.+++|..+..+.. .+.+...-+. +.+.+...+++.+|.+.+....+..+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~g 308 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhh
Confidence 468889999999999999999999874 1212222222 334556778899999988888765432221
Q ss_pred ---hH--HHHHHHHHhcCCCHHHHHHHhccc-CCCcHhhHHHHHHHHHhcCChHHHHHHHHH
Q 043608 172 ---IA--QNALIAMYTKFDRILDARNVFSGI-ARKDVTSWGSMIAAFSKLGYELEALCHFNE 227 (579)
Q Consensus 172 ---~~--~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (579)
.+ |..++..+ .|++.+ ..+|..- .++....|..|..++ +.|++..-...++.
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 11 12222222 355443 2223221 112244577777765 66887765555543
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.48 E-value=52 Score=30.90 Aligned_cols=94 Identities=10% Similarity=-0.094 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCcHhHHH--
Q 043608 336 VCNAILTMYAKCSVLCNALLVFKEL-----GKNADSVSWNSIIAACLQHNQAEELFRLFSRMLA---SQIKPDHITFN-- 405 (579)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~-- 405 (579)
+...+...|.+.|+++.|.+.+.++ +...-...+-..+..+...+++..+...+++... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455666666777777777766665 2222344566667777777777777777766543 22223322111
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH
Q 043608 406 DVMGACAKMASLEMVTQLHCYITK 429 (579)
Q Consensus 406 ~l~~~~~~~~~~~~a~~~~~~~~~ 429 (579)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223456677777777666553
No 276
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.94 E-value=39 Score=25.21 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHhH
Q 043608 337 CNAILTMYAKCSVLCNALLVFKELGKNA--DSVSWNSIIAACLQHNQ--AEELFRLFSRMLASQIKPDHIT 403 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 403 (579)
...++.-|...|+.++|.+.+++++.+. .......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4567888889999999999999996541 12223344444444432 4567888888887775544433
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=63.22 E-value=71 Score=27.73 Aligned_cols=15 Identities=0% Similarity=-0.006 Sum_probs=7.5
Q ss_pred HHHHHHhCCCCCChH
Q 043608 286 LFSEMRDRELLPDGL 300 (579)
Q Consensus 286 ~~~~m~~~g~~p~~~ 300 (579)
+.+.+.+.|..|+..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 344445556555543
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.36 E-value=62 Score=26.33 Aligned_cols=68 Identities=16% Similarity=0.054 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHH
Q 043608 204 SWGSMIAAFSKLGYELEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEA 283 (579)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 283 (579)
.|-..+..+ ..+...++.++|..|...|+- ..-...|......+...|++.+|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG--------------------------~~~AlfYe~wA~~lE~~g~~~~A 134 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIG--------------------------TKLSLFYEEFSKLLENAQFFLEA 134 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSS--------------------------TTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCc--------------------------HHHHHHHHHHHHHHHHcCCHHHH
Confidence 344444433 234467999999999999872 45566788888889999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 043608 284 MSLFSEMRDRELLPD 298 (579)
Q Consensus 284 ~~~~~~m~~~g~~p~ 298 (579)
.++|+.-.+.+-.|-
T Consensus 135 ~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 135 KVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHcCCccH
Confidence 999999988887774
No 279
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=62.03 E-value=33 Score=27.66 Aligned_cols=152 Identities=8% Similarity=0.074 Sum_probs=65.8
Q ss_pred HHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchh--HHHHHHHHHhcCChH
Q 043608 274 VASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPV--CNAILTMYAKCSVLC 351 (579)
Q Consensus 274 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 351 (579)
.+..|+.+.+..++..-...--.++....+.+.. .+..|+. ++++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 4556777776666643211101122222223333 3344443 44555556665554321 112344455667777
Q ss_pred HHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC---cHhHHHHHHHHHhccCChHHHHHHH
Q 043608 352 NALLVFKELGKNAD---SVSWNSIIAACLQHNQAEELFRLFSRMLASQ-IKP---DHITFNDVMGACAKMASLEMVTQLH 424 (579)
Q Consensus 352 ~a~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p---~~~~~~~l~~~~~~~~~~~~a~~~~ 424 (579)
-+..+++.-+..++ ....+ .+...+..|+.+-+..+++ .| ..+ +..-.+.+..++........-.++.
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCc-HHHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 77777755432221 11122 2233445566554444433 33 222 2222333433333322233334555
Q ss_pred HHHHHcCCCCc
Q 043608 425 CYITKTGLAFD 435 (579)
Q Consensus 425 ~~~~~~~~~~~ 435 (579)
+.+.+.|..++
T Consensus 162 ~~Ll~~ga~~~ 172 (201)
T 3hra_A 162 KLLMENGADQS 172 (201)
T ss_dssp HHHHHTTCCTT
T ss_pred HHHHHCCCCCC
Confidence 55666665554
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=59.55 E-value=33 Score=26.53 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHh
Q 043608 337 CNAILTMYAKCSVLCNALLVFKELGKNA--DSVSWNSIIAACLQHNQ--AEELFRLFSRMLASQIKPDHI 402 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 402 (579)
...++.-|...|+.++|.+.++++..+. .......+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4567888888999999999999996541 12223344444444322 456778888888777554443
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.65 E-value=66 Score=24.79 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=53.7
Q ss_pred HHHHHHHhhCC--CCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHH
Q 043608 453 GSARKLFNFME--NPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 453 ~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 529 (579)
+.+.+.|.... +.|+.-...-+. |+. ..+++..+|..|..+|+-.. ...|......+...|++.+|.++|+.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~-ya~--~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLK-FAE--YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHH-HHT--TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHH-HHH--hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555444 355543222222 222 23458999999999988765 4477888888899999999999999888
Q ss_pred HhhCCCC
Q 043608 530 NEYGIIP 536 (579)
Q Consensus 530 ~~~~~~~ 536 (579)
+. +-.|
T Consensus 129 ~~-~A~P 134 (152)
T 4a1g_A 129 QN-QAEP 134 (152)
T ss_dssp HT-TCBS
T ss_pred Hc-CCcc
Confidence 76 5555
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.84 E-value=47 Score=31.84 Aligned_cols=58 Identities=5% Similarity=-0.166 Sum_probs=29.4
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHH-------HHHHhhcchhhhhhhhHHHHHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAG-------LISACSSLRSLQLGRKVHDHILL 63 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~ 63 (579)
+|.+++.|...+.++.|..+..+.. ++.+...-+. +.+...-.+++.+|.+.+....+
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566666666666666666666553 2211111111 22233445566666666666554
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.00 E-value=63 Score=24.06 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhcC--CcHHHHHHHHHHHhCCCCCC
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMENPDV---VSWSSLILGYAQFG--CGDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~ 501 (579)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.+ ..+....++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34577778888888888888888876532 22233334444433 23567777777777665443
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.88 E-value=38 Score=28.53 Aligned_cols=22 Identities=5% Similarity=-0.076 Sum_probs=15.7
Q ss_pred hhHhhhcCChhHHHHHHHHhhh
Q 043608 6 VSSLCKQNLYNEALVAYDFSQN 27 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~ 27 (579)
++.+....++++|.++.++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5667777788888777776654
No 285
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=53.60 E-value=1.3e+02 Score=27.13 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCHHHHHHHhcccCCCcH---hhHHHHHHHHHhc-CChHHHHHHHHHHHhcCC
Q 043608 175 NALIAMYTKFDRILDARNVFSGIARKDV---TSWGSMIAAFSKL-GYELEALCHFNEMLHHGA 233 (579)
Q Consensus 175 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~ 233 (579)
..++.-|...|+.++|.+.++++..|.- .....+..++-+. ...+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 4567778888899999999998876631 2222222222221 123455667777776665
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.31 E-value=50 Score=25.49 Aligned_cols=63 Identities=14% Similarity=0.262 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhcCC--cHHHHHHHHHHHhCCCCCC
Q 043608 439 MNGLMDIYIKCGSLGSARKLFNFMENPDV---VSWSSLILGYAQFGC--GDEALKLFTRMRSLGVSPN 501 (579)
Q Consensus 439 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 501 (579)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45577778888888888888888876532 223333444444322 4567777777777665443
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.53 E-value=96 Score=25.15 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=49.9
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 043608 434 FDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACS 513 (579)
Q Consensus 434 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 513 (579)
++..+-...+.++.+.++.+....+.+.+.+++...-...+.++.+.|+. ++...+.++.+ .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 45555555666666666654444444545556666666666666666653 34444444443 345555555555665
Q ss_pred ccCchHHHHHHHHHHHH
Q 043608 514 HVGLVEEGLHLYRIMEN 530 (579)
Q Consensus 514 ~~g~~~~a~~~~~~~~~ 530 (579)
..|+ +++...+..+.+
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 5555 444555555544
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.32 E-value=1.3e+02 Score=28.04 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=13.1
Q ss_pred HHHHHccCChhhHHHhhcCCCC
Q 043608 77 LNMYGKCGSLEDARMGFDKMPQ 98 (579)
Q Consensus 77 ~~~~~~~g~~~~A~~~~~~~~~ 98 (579)
+..-+..|+.+-+..+++.-..
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~ 39 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGAS 39 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHCCCHHHHHHHHHcCCC
Confidence 3344556777777777765443
No 289
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.68 E-value=90 Score=24.58 Aligned_cols=80 Identities=19% Similarity=0.111 Sum_probs=48.2
Q ss_pred HcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC---------------C-C-hhHHHHHHH
Q 043608 448 KCGSLGSARKLFNFMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVS---------------P-N-LVTLVGVLT 510 (579)
Q Consensus 448 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---------------p-~-~~~~~~l~~ 510 (579)
-.|++.+++-++...-.....-|.. -+|-+.+++..|...++.+.+..+. | | ...++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 3566666665555433222222322 2345666777777777777644332 1 2 335677778
Q ss_pred HhhccCchHHHHHHHHHHH
Q 043608 511 ACSHVGLVEEGLHLYRIME 529 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~ 529 (579)
.|...|+.++|+..+..--
T Consensus 123 lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhhhc
Confidence 8889999999998887644
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.29 E-value=1.5e+02 Score=26.92 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHhHHH
Q 043608 337 CNAILTMYAKCSVLCNALLVFKELGKNA--DSVSWNSIIAACLQHNQ--AEELFRLFSRMLASQIKPDHITFN 405 (579)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~ 405 (579)
...++.-|...|+.++|.+.++++..+. .......+..++-+.++ .+.+.+++..+...|+-+......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4667888999999999999999997541 12233444444444333 456788888888877665544433
No 291
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=49.70 E-value=9.1 Score=27.87 Aligned_cols=71 Identities=15% Similarity=0.039 Sum_probs=46.0
Q ss_pred HHccCChhhHHHhhcCCCCCCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcccHHHHHHHhcCCCcchhHHHH
Q 043608 80 YGKCGSLEDARMGFDKMPQRNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFTFGSIIKACSGLGSVCLGRQL 158 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 158 (579)
|.+.+++.+++++..+ ...|--.|...+.+++.+-|.++++-.++.| +...|.+.+-.|...=+++.++++
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3445555555554422 3346666777777888888888888888766 566677777777666666655444
No 292
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.68 E-value=52 Score=25.72 Aligned_cols=73 Identities=8% Similarity=0.050 Sum_probs=55.6
Q ss_pred hhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHh--CCCCChhHHHHHHHHHHccCChhh
Q 043608 15 YNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLS--KCQPDVVLQNHILNMYGKCGSLED 88 (579)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 88 (579)
.+.+++.++...+..|.+.++ .-..++..+...++.-.|.++++.+.+. +...+..|.-.-+..+...|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 567777777776666888765 3456777888878889999999999988 766777766667788888886544
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.97 E-value=94 Score=24.32 Aligned_cols=53 Identities=8% Similarity=0.127 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 043608 484 DEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPT 537 (579)
Q Consensus 484 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 537 (579)
+.+..+|..|..+|+-.. ...|......+...|++.+|.++|+.-.+. +-.|.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 457788999999888665 446778888888899999999999988876 65664
No 294
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=48.78 E-value=2.2e+02 Score=28.49 Aligned_cols=80 Identities=11% Similarity=-0.126 Sum_probs=44.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCC-CCCchhHHHHHHHHHh--
Q 043608 270 LIAGVASHSNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGF-DSNVPVCNAILTMYAK-- 346 (579)
Q Consensus 270 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-- 346 (579)
....+.-.|++|.|.+++-.. ...+..++...+..+.-.+- .. .+..... .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~----~lls~~~~~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DS----STRLTKKPKR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CC----cccccCCCcc-cccHHHHHHHHHHHh
Confidence 445666789999999988754 35566666666665443332 11 1111110 11 2235667777765
Q ss_pred -cCChHHHHHHHHHcC
Q 043608 347 -CSVLCNALLVFKELG 361 (579)
Q Consensus 347 -~~~~~~a~~~~~~~~ 361 (579)
..+..+|.+.|--+.
T Consensus 368 ~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTTCHHHHHHHHHGGG
T ss_pred hcCCHHHHHHHHHHHh
Confidence 578888888877663
No 295
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.31 E-value=30 Score=29.45 Aligned_cols=51 Identities=12% Similarity=-0.156 Sum_probs=25.2
Q ss_pred hhcCCChhhHHHHHHHHHHCCCCCCccc-------HHHHHHHhc--CCCcchhHHHHHHH
Q 043608 111 CSQNYQENDAIKLYIQMLQSGVMPGQFT-------FGSIIKACS--GLGSVCLGRQLHAH 161 (579)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~-------~~~li~~~~--~~~~~~~a~~~~~~ 161 (579)
.++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 3455666666666666655554444222 223333321 45665555555544
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.00 E-value=1.2e+02 Score=25.09 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 043608 483 GDEALKLFTRMRSLGVSPN-LVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIP 536 (579)
Q Consensus 483 ~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 536 (579)
.+.+..+|..|..+||-.. ...|......+...|++.+|..+|+.-.+. +-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 3678899999999988765 447788888889999999999999998877 6666
No 297
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=45.87 E-value=99 Score=28.17 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=12.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhhc
Q 043608 543 CVVDLLARAGCVHEAEDFINQMA 565 (579)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~ 565 (579)
.++..+.+....+.....+.+.+
T Consensus 143 ~vl~~~~k~~G~~~l~~l~~~sg 165 (364)
T 3l6a_A 143 LCLQQLAKLQDREWLTELFQQSK 165 (364)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHcC
Confidence 34455555555666666666553
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.68 E-value=1.2e+02 Score=25.19 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 043608 219 LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD 298 (579)
Q Consensus 219 ~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 298 (579)
+++.++|..|...|+. ..-...|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG--------------------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIG--------------------------QESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCS--------------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcc--------------------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5777888888888772 45566677888888888999999999988887776773
No 299
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=45.29 E-value=87 Score=24.98 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=28.0
Q ss_pred hcCCCHHHHHHHhcccCCC-cHhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 043608 182 TKFDRILDARNVFSGIARK-DVTSWGSMIAAFSKLGYELEALCHFNEMLHHGA 233 (579)
Q Consensus 182 ~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 233 (579)
++.|+++....+++.-... +...-.+.+...+..|+.+.-.++.+.+.+.|.
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga 66 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCC
Confidence 4456666655555443221 111112344455566776666777777777776
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.04 E-value=1.2e+02 Score=25.46 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHhhC
Q 043608 434 FDVFVMNGLMDIYIKCGSLGSARKLFNFM 462 (579)
Q Consensus 434 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 462 (579)
+++......+..+.+.|+.++|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34444555556666677777776666543
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.96 E-value=53 Score=25.05 Aligned_cols=60 Identities=3% Similarity=0.037 Sum_probs=29.2
Q ss_pred HHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 392 MLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 392 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44455554443222 2223333344455666666665555555555555555555555543
No 302
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.65 E-value=1.2e+02 Score=23.82 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 043608 219 LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD 298 (579)
Q Consensus 219 ~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 298 (579)
+.+.++|..|..+|+. ..-...|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG--------------------------~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIG--------------------------VSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSS--------------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcc--------------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4477888889888872 45566677788888888999999999998888877775
Q ss_pred h
Q 043608 299 G 299 (579)
Q Consensus 299 ~ 299 (579)
.
T Consensus 131 ~ 131 (164)
T 2wvi_A 131 E 131 (164)
T ss_dssp H
T ss_pred H
Confidence 3
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.53 E-value=1.4e+02 Score=24.55 Aligned_cols=84 Identities=7% Similarity=-0.059 Sum_probs=41.2
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChH---HHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchh--HHHHHHHHH
Q 043608 271 IAGVASHSNANEAMSLFSEMRDRELLPDGL---TVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPV--CNAILTMYA 345 (579)
Q Consensus 271 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 345 (579)
+...++.|+.+.+..+++.+.+.|..++.. ..+. +...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 444566788888888887776666555432 1222 23333344443 4444555555443221 112233334
Q ss_pred hcCChHHHHHHHHH
Q 043608 346 KCSVLCNALLVFKE 359 (579)
Q Consensus 346 ~~~~~~~a~~~~~~ 359 (579)
..|+.+-+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 45555554444444
No 304
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=42.36 E-value=5.4 Score=29.02 Aligned_cols=72 Identities=8% Similarity=-0.015 Sum_probs=53.4
Q ss_pred hhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhh
Q 043608 9 LCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLED 88 (579)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 88 (579)
|.++++|++++++.. ....|.-.|...+.+++.+-|.++++...+.| +...|.+.+-.|-..=+++-
T Consensus 16 ykkN~rw~qSI~L~K----------kDkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDv 82 (125)
T 3qil_A 16 PRGSHMWKQSVELAK----------KDSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDV 82 (125)
T ss_dssp SSSCCCCSSCCCCCS----------CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTH
T ss_pred hhccccHHHHHHHHH----------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHH
Confidence 556667776665543 23456667888889999999999999988766 66777777777777778888
Q ss_pred HHHhh
Q 043608 89 ARMGF 93 (579)
Q Consensus 89 A~~~~ 93 (579)
++++-
T Consensus 83 VLEla 87 (125)
T 3qil_A 83 VLELA 87 (125)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 87764
No 305
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=42.10 E-value=2.8e+02 Score=27.77 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCHHHHHHHhcccCCC---cHhhHHHHHHHHHh
Q 043608 175 NALIAMYTKFDRILDARNVFSGIARK---DVTSWGSMIAAFSK 214 (579)
Q Consensus 175 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 214 (579)
-.++--+.++|++++|.++.++.... -...|...+..|+.
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 35667788888888888887665431 12355555666653
No 306
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.79 E-value=71 Score=24.53 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=31.4
Q ss_pred HHHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 391 RMLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 391 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34555555444322 23333333444556666666666665555555555556666666544
No 307
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=39.96 E-value=1.1e+02 Score=22.34 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=6.6
Q ss_pred chhHHHHHHHHhcCCh
Q 043608 539 EHCSCVVDLLARAGCV 554 (579)
Q Consensus 539 ~~~~~l~~~~~~~g~~ 554 (579)
.++...++...+.|-.
T Consensus 54 ~s~rd~~r~a~~~glI 69 (119)
T 1wty_A 54 RSPRAAIRGAFQVGLL 69 (119)
T ss_dssp SSHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHcCCC
Confidence 3344444444444433
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.34 E-value=1.3e+02 Score=23.17 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 043608 219 LEALCHFNEMLHHGAYQPNEFIFGSVFSACSNFARILFNEIDSPDLASWNALIAGVASHSNANEAMSLFSEMRDRELLPD 298 (579)
Q Consensus 219 ~~a~~~~~~m~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 298 (579)
+++.++|..|..+|+- ..-+..|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG--------------------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIG--------------------------TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTT--------------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCc--------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4478888888888762 45556677788888888899999998888888777774
No 309
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=39.30 E-value=1.5e+02 Score=23.75 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=7.5
Q ss_pred CCChhhHHHHHHHHHhcC
Q 043608 464 NPDVVSWSSLILGYAQFG 481 (579)
Q Consensus 464 ~~~~~~~~~l~~~~~~~~ 481 (579)
+++...-...+.++.+.+
T Consensus 118 d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp CSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 344433344444444444
No 310
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=39.15 E-value=58 Score=25.48 Aligned_cols=60 Identities=7% Similarity=0.039 Sum_probs=31.7
Q ss_pred HHHCCCCCcHhHHHHHHHHHhccCChHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHHcCCH
Q 043608 392 MLASQIKPDHITFNDVMGACAKMASLEMVTQLHCYITKT--GLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 392 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555554432 23344444445555666666666655 5555555555555666666543
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.00 E-value=1.2e+02 Score=25.66 Aligned_cols=182 Identities=10% Similarity=-0.041 Sum_probs=83.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcHh-------HHHHHHHHHh--ccCChHHHHHHHHHHHHcC---------CCC-c
Q 043608 375 ACLQHNQAEELFRLFSRMLASQIKPDHI-------TFNDVMGACA--KMASLEMVTQLHCYITKTG---------LAF-D 435 (579)
Q Consensus 375 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~-~ 435 (579)
..++.|+.+....+++.+.+.|..++.. -.+.+..+.. +.|+.+-+..+++.-...+ +.. +
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3345566666666666555555444422 2233333321 4566665555555433211 000 0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChh-----------------hHHHHHHHHHhcCCcHHHHHHHHHHHh---
Q 043608 436 VFVMNGLMDIYIKCGSLGSARKLFNFMENPDVV-----------------SWSSLILGYAQFGCGDEALKLFTRMRS--- 495 (579)
Q Consensus 436 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~a~~~~~~m~~--- 495 (579)
..- ...+...+..|+.+-+.-+++.-..++.. -.+.|. ..+..|+.+ +.+.+.+
T Consensus 91 ~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~-~A~~~g~~~----~v~~Ll~~~~ 164 (260)
T 3jxi_A 91 YRG-QTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS-LAACTNQPH----IVHYLTENGH 164 (260)
T ss_dssp EES-BCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHH-HHHHTTCHH----HHHHHHHCSS
T ss_pred cCC-CCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHH-HHHHcCCHH----HHHHHHhccc
Confidence 011 11233345567777766666654433322 223333 334556643 4445555
Q ss_pred CCCCCCh---hHHHHHHHHhhccC-c---hHHHHHHHHHHHHhhCCC----------CCcchhHHHHHHHHhcCChhHHH
Q 043608 496 LGVSPNL---VTLVGVLTACSHVG-L---VEEGLHLYRIMENEYGII----------PTREHCSCVVDLLARAGCVHEAE 558 (579)
Q Consensus 496 ~~~~p~~---~~~~~l~~~~~~~g-~---~~~a~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~ 558 (579)
.|..++. .-.+.|..++.... . .+...++++.+.+. |.. .+..-.+. +...++.|+.+-+.
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tp-L~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSP-LMMAAKTGKIGIFQ 242 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCH-HHHHHHTTCHHHHH
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCH-HHHHHHcCCHHHHH
Confidence 5655542 22223333332111 1 22223444444433 322 23333333 45556788888888
Q ss_pred HHHHhh
Q 043608 559 DFINQM 564 (579)
Q Consensus 559 ~~~~~~ 564 (579)
-++++-
T Consensus 243 ~Ll~~g 248 (260)
T 3jxi_A 243 HIIRRE 248 (260)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888876
No 312
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=38.82 E-value=1.5e+02 Score=24.29 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=41.3
Q ss_pred hhhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCCh---hHHHHHHHH
Q 043608 3 NDYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDV---VLQNHILNM 79 (579)
Q Consensus 3 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~ 79 (579)
++.+...++.|+.+....+++.-... ....+....+.| ...+..|+. ++++.+.+.|..++. ...+ .+..
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L-~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t-~L~~ 79 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTAL-HWACSAGHT----EIVEFLLQLGVPVNDKDDAGWS-PLHI 79 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCSCCCCTTSCC-HHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHH-HHHHHcCcH----HHHHHHHHhCCCCCCcCCCCCC-HHHH
Confidence 45566677778877777777643321 112222222222 233334443 344455555543332 1122 2333
Q ss_pred HHccCChhhHHHhhcCCC
Q 043608 80 YGKCGSLEDARMGFDKMP 97 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~ 97 (579)
.+..|+.+-+..+++.-.
T Consensus 80 A~~~~~~~~v~~Ll~~g~ 97 (231)
T 3aji_A 80 AASAGXDEIVKALLVKGA 97 (231)
T ss_dssp HHHHTCHHHHHHHHHTTC
T ss_pred HHHcCHHHHHHHHHHcCC
Confidence 345566666555555433
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.65 E-value=1.9e+02 Score=24.88 Aligned_cols=145 Identities=8% Similarity=-0.003 Sum_probs=67.5
Q ss_pred HHHHHHhcCChHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh---HHHHHHHHHhccCC
Q 043608 340 ILTMYAKCSVLCNALLVFKELGKNADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI---TFNDVMGACAKMAS 416 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~ 416 (579)
.+...+..|+.+-+..+++. +..++...-.+.+...+..|+.+-+ +.+.+.|..++.. ..+.+ ...+..|+
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~ 107 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA-GALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTAL-YYAVDSGN 107 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-TGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHH-HHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHH-HHHHHcCC
Confidence 34455567777766666654 2222221112233344455655433 3344456544422 22233 33344556
Q ss_pred hHHHHHHHHHHHHcCCCCchhHH---HHHHHHHHHcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhcCCcHHHHHHHHH
Q 043608 417 LEMVTQLHCYITKTGLAFDVFVM---NGLMDIYIKCGSLGSARKLFNFMENP-DVVSWSSLILGYAQFGCGDEALKLFTR 492 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 492 (579)
.+-+..++ +.|..++.... ...+...+..|..+-+..+++.-..+ +...-.+.+...+..|+.+-+.-+++.
T Consensus 108 ~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 108 MQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 55444443 33444332211 23444556677777776666655432 221223334444566666655555544
Q ss_pred HH
Q 043608 493 MR 494 (579)
Q Consensus 493 m~ 494 (579)
-.
T Consensus 184 ga 185 (285)
T 3kea_A 184 MT 185 (285)
T ss_dssp HH
T ss_pred CC
Confidence 33
No 314
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.20 E-value=2.1e+02 Score=25.24 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcCC
Q 043608 338 NAILTMYAKCSVLCNALLVFKELGK 362 (579)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (579)
..++.-|...|+.++|...+++++.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 3455556666666666666666543
No 315
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=37.98 E-value=1.5e+02 Score=23.53 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=12.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCc
Q 043608 377 LQHNQAEELFRLFSRMLASQIKPD 400 (579)
Q Consensus 377 ~~~~~~~~a~~~~~~m~~~~~~p~ 400 (579)
+..|+.+.-.++.+-+.+.|..++
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCcchHHHHHHHHHHCCCCCC
Confidence 344444444455555555555444
No 316
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.67 E-value=1.6e+02 Score=23.74 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=49.3
Q ss_pred CcHhHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 043608 399 PDHITFNDVMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYA 478 (579)
Q Consensus 399 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 478 (579)
++...-...+.++...++.+.. ..+..+. -.++..+-...+.++.+.+..+....+...+.+++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAV-EPLIKAL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHH-HHHHHHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444444455444443222 2222222 23566666666777777776554444445555677666666677777
Q ss_pred hcCCcHHHHHHHHHHHh
Q 043608 479 QFGCGDEALKLFTRMRS 495 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~ 495 (579)
+.+. .++...+.++.+
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 7665 455555555554
No 317
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.52 E-value=1.8e+02 Score=23.82 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=7.4
Q ss_pred HHcCCHHHHHHHHhh
Q 043608 447 IKCGSLGSARKLFNF 461 (579)
Q Consensus 447 ~~~~~~~~A~~~~~~ 461 (579)
+..|+.+-+..+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 344555555555444
No 318
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.35 E-value=88 Score=24.00 Aligned_cols=58 Identities=7% Similarity=0.083 Sum_probs=24.4
Q ss_pred HHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC
Q 043608 493 MRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG 552 (579)
Q Consensus 493 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (579)
+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCC
Confidence 4445554433211 2233333334455555566655544 33334444444444444444
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.58 E-value=43 Score=23.42 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=31.0
Q ss_pred CCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHHH
Q 043608 185 DRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEAL 222 (579)
Q Consensus 185 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 222 (579)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788999999999988899999999998777765553
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.48 E-value=78 Score=26.15 Aligned_cols=204 Identities=7% Similarity=-0.043 Sum_probs=90.5
Q ss_pred hhHhhhcCChhHHHHHHHHhhhhcCCCCCc---ccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhH---HHHHHHH
Q 043608 6 VSSLCKQNLYNEALVAYDFSQNNTNIRIRP---STYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVL---QNHILNM 79 (579)
Q Consensus 6 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~ 79 (579)
+...++.|+.+-...+++. |..++. ... +.+...+..|+. ++++.+.+.+..++... -...+..
T Consensus 13 l~~A~~~g~~~~~~~Ll~~-----g~~~~~~~~~g~-t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEA-----GYDVRQPDKENV-TLLHWAAINNRI----DLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTSC-CHHHHHHHTTCH----HHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred HHHHHHcCChHHHHHHHHc-----CCCcCCCCCCCC-CHHHHHHHhCCH----HHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 4455667776666555552 332222 222 234444555554 44555555553332111 1233444
Q ss_pred HHccCChhhHHHhhcCCCCCC---eeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCcc---cHHHHHHHhcCCCcch
Q 043608 80 YGKCGSLEDARMGFDKMPQRN---VVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQF---TFGSIIKACSGLGSVC 153 (579)
Q Consensus 80 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~---~~~~li~~~~~~~~~~ 153 (579)
.+..|+.+-+..+++.-..++ ...++.+ ...+..|+.+ +++.+.+.|..++.. ..+.+..++.. +...
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~ 156 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSV 156 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSS
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHh-CChH
Confidence 556778777777776543332 2223333 3344456544 445555556554432 22233333222 2222
Q ss_pred hHHHHHHHHHHhccCCChh---HHHHHHHHHhcCCCHHHHHHHhcccCCCcHh--hHHHHHHHHHhcCChHHHHHHHHHH
Q 043608 154 LGRQLHAHVIKSEHGSHLI---AQNALIAMYTKFDRILDARNVFSGIARKDVT--SWGSMIAAFSKLGYELEALCHFNEM 228 (579)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m 228 (579)
... +.+.+.|..++.. .-.+.+...+..|+.+-+.-+++.-...+.. .-.+-+....+.|+.+-+.-+++..
T Consensus 157 ~~~---~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 157 DPT---RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp TTH---HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHH---HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 222 2233344333211 1123344555667777666666543222111 0012334445566665554444443
No 321
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=33.34 E-value=1.8e+02 Score=24.07 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC-ChhHHHHHHHh
Q 043608 485 EALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG-CVHEAEDFINQ 563 (579)
Q Consensus 485 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 563 (579)
....+-.++..+|+.++. ....+..+......+.|..++++-...+.-.++......++..+.+.| .++.+..+++.
T Consensus 128 G~~~I~~eL~~KGI~~~~--I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~ 205 (221)
T 3d5l_A 128 GPGIIRQHLRQKGIGESD--IDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDE 205 (221)
T ss_dssp CHHHHHHHHHHTTCCHHH--HHHHGGGCCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred cHHHHHHHHHHcCCCHHH--HHHHHHhCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 355667788888886542 111111111112234566666655443111122334678888899998 77777777777
Q ss_pred hc
Q 043608 564 MA 565 (579)
Q Consensus 564 ~~ 565 (579)
+.
T Consensus 206 ~~ 207 (221)
T 3d5l_A 206 VV 207 (221)
T ss_dssp --
T ss_pred cc
Confidence 63
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.20 E-value=93 Score=23.86 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHhCCCCCChhHHHHHHHHhhccC-chHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC
Q 043608 493 MRSLGVSPNLVTLVGVLTACSHVG-LVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG 552 (579)
Q Consensus 493 m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (579)
+.+.|++++..=. .++..+...+ ..-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCC
Confidence 4445555443322 2233333333 444555666655544 33333444434444444444
No 323
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.00 E-value=79 Score=24.07 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 417 LEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 417 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
.-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34455555555555444454444444555555554
No 324
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.93 E-value=1.9e+02 Score=23.70 Aligned_cols=208 Identities=11% Similarity=0.036 Sum_probs=102.2
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhcCCCCCc---ccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChh--HHHHHHH
Q 043608 4 DYVSSLCKQNLYNEALVAYDFSQNNTNIRIRP---STYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVV--LQNHILN 78 (579)
Q Consensus 4 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~ 78 (579)
+.+...+..|+.+-+..+++ . |..++. ...+. +...+..|+. ++++.+.+.|..++.. .-...+.
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~----~-g~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQ----A-GANIDTCSEDQRTP-LMEAAENNHL----EAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHH----T-TCCTTCCCTTCCCH-HHHHHHTTCH----HHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CHHHHHHHcCcHHHHHHHHH----c-CCCcCccCCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 45556677777765544444 2 333322 22223 3333444554 4555556666443321 1122344
Q ss_pred HHHccCChhhHHHhhcCCC-C---CCeeehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCccc--HHHHHHHhcCCCcc
Q 043608 79 MYGKCGSLEDARMGFDKMP-Q---RNVVSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFT--FGSIIKACSGLGSV 152 (579)
Q Consensus 79 ~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~--~~~li~~~~~~~~~ 152 (579)
..+..|+.+-+..+++.-. . ++...++.+. ..+..|+. ++++.+.+.|..++... -...+...+..|+.
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI-WATEYKHV----DLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHH-HHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHH-HHHHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence 4556788888877777652 2 2222333333 33445554 45555556665554321 11223333344544
Q ss_pred hhHHHHHHHHHHhccCCChhH--HHHHHHHHhcCCCHHHHHHHhcccCCCcHh--hHHHHHHHHHhcCChHHHHHHHHHH
Q 043608 153 CLGRQLHAHVIKSEHGSHLIA--QNALIAMYTKFDRILDARNVFSGIARKDVT--SWGSMIAAFSKLGYELEALCHFNEM 228 (579)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m 228 (579)
+ +.+.+.+.|..++... -.+.+...++.|+.+-+.-+++.-...+.. .-.+-+...+..|+...++++.+.+
T Consensus 158 ~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 158 D----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp H----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred H----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3 4445555555443211 123444556677777776666553332111 1112334455677777788887777
Q ss_pred Hh
Q 043608 229 LH 230 (579)
Q Consensus 229 ~~ 230 (579)
.+
T Consensus 234 ~d 235 (237)
T 3b7b_A 234 QD 235 (237)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 325
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.80 E-value=1.9e+02 Score=23.07 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=12.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043608 365 DSVSWNSIIAACLQHNQAEELFRLFSRML 393 (579)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 393 (579)
+...-...+.++.+.|.. .+...+..+.
T Consensus 151 ~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 444444444555554442 3344444443
No 326
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.39 E-value=1.1e+02 Score=20.20 Aligned_cols=60 Identities=7% Similarity=0.053 Sum_probs=35.9
Q ss_pred HHHHCCCCCcHhHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCC
Q 043608 391 RMLASQIKPDHITFNDVMGACAKMA-SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGS 451 (579)
Q Consensus 391 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 451 (579)
.+.+.|+..+..- ..++..+...+ ..-.+.++.+.+.+.+...+..+....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556666665544 33445555443 455667777777766656666666666666666554
No 327
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.58 E-value=68 Score=19.33 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=24.2
Q ss_pred HHHHHHHHhhCCCCCcchhHHHHHHHHhcCC--hhHHHHHHHhhcC
Q 043608 523 HLYRIMENEYGIIPTREHCSCVVDLLARAGC--VHEAEDFINQMAC 566 (579)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~ 566 (579)
+.++.+.+. |+.+. ....++.+.|. ++.|.+++.+|..
T Consensus 11 qmlq~L~eM-GFd~e-----rae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 11 QMLQELVNA-GCDQE-----MAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp HHHHHHHHH-HCCHH-----HHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHc-CCCHH-----HHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 344555544 66553 33455666666 8899999998863
No 328
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=31.34 E-value=2e+02 Score=22.84 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcC-ChhHHHHHHHhhc
Q 043608 487 LKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAG-CVHEAEDFINQMA 565 (579)
Q Consensus 487 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 565 (579)
..+-.++..+|+.++. ....+..+......+.|..++++-...+.-.++......++..+.+.| .++.+..+++.+.
T Consensus 87 ~~I~~eL~~KGI~~~~--I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 87 KVIKLNLSKKGIDDNI--AEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHHHHTTTCCHHH--HHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHH--HHHHHHhCCchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 4556677777775432 222222111112245566666654433221222334566777888888 7778888888886
Q ss_pred CCCCh
Q 043608 566 CDADI 570 (579)
Q Consensus 566 ~~~~~ 570 (579)
..||.
T Consensus 165 ~~~~~ 169 (177)
T 3e3v_A 165 LIFDD 169 (177)
T ss_dssp HC---
T ss_pred CCCCc
Confidence 56654
No 329
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.23 E-value=1.4e+02 Score=22.68 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhC
Q 043608 484 DEALKLFTRMRSL 496 (579)
Q Consensus 484 ~~a~~~~~~m~~~ 496 (579)
-.|.++++.+.+.
T Consensus 38 ~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 38 PTADDIYKALEGK 50 (145)
T ss_dssp CCHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHh
Confidence 3344444444333
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.68 E-value=2.4e+02 Score=25.26 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=40.3
Q ss_pred HHHHHHcCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh---HHHHHHHH
Q 043608 443 MDIYIKCGSLGSARKLFNFMEN--------PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV---TLVGVLTA 511 (579)
Q Consensus 443 ~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~ 511 (579)
+...+..|+.+-+..+++.-.. .|..-++.|. ..+..|+.+ +.+.+.+.|..++.. -.+. +..
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tp-L~~ 250 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWED----VAMRFVEMGIDVNMEDNEHTVP-LYL 250 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCH-HHH
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCH-HHH
Confidence 3444567777777777765332 2222223333 234555543 445556667666532 1222 223
Q ss_pred hhccCchHHHHHHHHH
Q 043608 512 CSHVGLVEEGLHLYRI 527 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~ 527 (579)
.+..|..+-+..+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3455777766666665
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=30.51 E-value=1.3e+02 Score=22.55 Aligned_cols=60 Identities=5% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHCCCCCcHhHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 392 MLASQIKPDHITFNDVMGACAKMA-SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 392 m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 9 l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45556555544332 333333444 4556667777766666555666655566666666654
No 332
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=30.10 E-value=3e+02 Score=26.56 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHhC
Q 043608 471 SSLILGYAQFGCGDEALKLFTRMRSL 496 (579)
Q Consensus 471 ~~l~~~~~~~~~~~~a~~~~~~m~~~ 496 (579)
..|-+-|.++|++-+|.+++..+-..
T Consensus 221 dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 221 NILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp HHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 33344444555555555555555444
No 333
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.61 E-value=2.1e+02 Score=22.61 Aligned_cols=85 Identities=6% Similarity=-0.038 Sum_probs=42.2
Q ss_pred hhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhH--HHHHHHHHHc
Q 043608 5 YVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVL--QNHILNMYGK 82 (579)
Q Consensus 5 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 82 (579)
.+-..+..|+.+....++..-... ....+....+.| ...+..|+. ++++.+++.|..++... -...+...+.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L-~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 8 ALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPL-NIAVHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHTCTTCC-TTCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHcCCCC-CCCCCCCCCCHH-HHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 344556677877777776533211 112222223333 333444553 45556666665444221 1123344456
Q ss_pred cCChhhHHHhhcC
Q 043608 83 CGSLEDARMGFDK 95 (579)
Q Consensus 83 ~g~~~~A~~~~~~ 95 (579)
.|+.+-+..+++.
T Consensus 82 ~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 82 QGRTEILAYMLKH 94 (201)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHhc
Confidence 7788777777743
No 334
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=29.06 E-value=1.1e+02 Score=26.11 Aligned_cols=53 Identities=9% Similarity=-0.042 Sum_probs=31.8
Q ss_pred HHHhcCCcHHHHHHHHHHHhCC-CCCChhHHHHHHHHhhccCchHHHHHHHHHH
Q 043608 476 GYAQFGCGDEALKLFTRMRSLG-VSPNLVTLVGVLTACSHVGLVEEGLHLYRIM 528 (579)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 528 (579)
.|....++.....++..|.... -.|+......++++|.+.-+-.+|.+.++.-
T Consensus 182 iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 3334445666666666666532 2456666677777777776666666666643
No 335
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.93 E-value=2.7e+02 Score=23.69 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=34.3
Q ss_pred hCCCCChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCcch
Q 043608 461 FMENPDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENEYGIIPTREH 540 (579)
Q Consensus 461 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 540 (579)
.+.+++...-...+.++.+.|+.. +...+..+.+. |+ .-...+.++.+.|+ ..+...+..+... .++...
T Consensus 200 ~l~d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~---~~~~~~ 269 (280)
T 1oyz_A 200 MLQDKNEEVRIEAIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYK---FDDNEI 269 (280)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT---SSCCHH
T ss_pred HhcCCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc---CCCcHH
Confidence 333455555555566666666433 33333333332 22 11233444555555 3455555555532 334444
Q ss_pred hHHHHHH
Q 043608 541 CSCVVDL 547 (579)
Q Consensus 541 ~~~l~~~ 547 (579)
....+..
T Consensus 270 ~~~~~~~ 276 (280)
T 1oyz_A 270 ITSAIDK 276 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 336
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.78 E-value=1.4e+02 Score=24.50 Aligned_cols=155 Identities=6% Similarity=-0.065 Sum_probs=76.1
Q ss_pred chhhhhHhhhcCChhHHHHHHHHhhhhcCCCC---CcccHHHHHHHhhcchhhhhhhhHHHHHHHhCC----CCChhHHH
Q 043608 2 SNDYVSSLCKQNLYNEALVAYDFSQNNTNIRI---RPSTYAGLISACSSLRSLQLGRKVHDHILLSKC----QPDVVLQN 74 (579)
Q Consensus 2 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~ 74 (579)
+.+.+-..++.|+.+-+..+++.- |..+ +....+. +...+..|+.+-+..+++.-..... ..+..-.+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~----g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFE----GCEVHQRGAMGETA-LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTT----CSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhc----CCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC
Confidence 345566677788877777666531 2222 2222333 3444455665444444433211100 01112223
Q ss_pred HHHHHHHccCChhhHHHhhcCCCCCCe----------------eehhHHhhhhhcCCChhhHHHHHHHHHHCCCCCCccc
Q 043608 75 HILNMYGKCGSLEDARMGFDKMPQRNV----------------VSWTAMIAGCSQNYQENDAIKLYIQMLQSGVMPGQFT 138 (579)
Q Consensus 75 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 138 (579)
.+...+..|+.+-+..+++.-..++. .-.+.| ...+..|+. ++++.+.+.|..++...
T Consensus 78 -~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~v~~Ll~~ga~~~~~d 151 (232)
T 2rfa_A 78 -ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSE----EIVRLLIEHGADIRAQD 151 (232)
T ss_dssp -HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCH----HHHHHHHHTTCCTTCCC
T ss_pred -HHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCH----HHHHHHHHCCCCCCCCC
Confidence 33444567888877777766544332 123333 333444554 34445555665554321
Q ss_pred --HHHHHHHhcCCCcchhHHHHHHHHHHhcc
Q 043608 139 --FGSIIKACSGLGSVCLGRQLHAHVIKSEH 167 (579)
Q Consensus 139 --~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 167 (579)
-.+.+...+..|+.+.+..+++.+.+.|.
T Consensus 152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 12344455566777766666666666654
No 337
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=28.49 E-value=70 Score=16.81 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhhcCC
Q 043608 543 CVVDLLARAGCVHEAEDFINQMACD 567 (579)
Q Consensus 543 ~l~~~~~~~g~~~~A~~~~~~~~~~ 567 (579)
..+..|...|+.++|..+-++|..+
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k~~ 31 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLKNK 31 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4566777788888888877777543
No 338
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=28.39 E-value=1.2e+02 Score=19.31 Aligned_cols=46 Identities=7% Similarity=-0.139 Sum_probs=33.4
Q ss_pred cHHHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHcc
Q 043608 37 TYAGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKC 83 (579)
Q Consensus 37 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (579)
.++.++...++..-.+.+.-.+++.++.| ..+...|..-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 35667777777777888888888888887 66777776666666653
No 339
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.64 E-value=1.9e+02 Score=21.53 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=28.1
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhccC
Q 043608 356 VFKELGKNADSVSWNSIIAACLQHN-QAEELFRLFSRMLASQIKPDHITFNDVMGACAKMA 415 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 415 (579)
.+++.+.+++. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 8 ELRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444222 2223344444444 45556666666666555555555554444444443
No 340
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=27.62 E-value=91 Score=27.97 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcC
Q 043608 285 SLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMG 329 (579)
Q Consensus 285 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 329 (579)
++++.+.+.|+.|...++.-++..+.+.=.++.+..+++.+...|
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 355666777888988888888888888888889999999888776
No 341
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.41 E-value=2.1e+02 Score=23.25 Aligned_cols=115 Identities=10% Similarity=-0.041 Sum_probs=56.4
Q ss_pred HHHHHHhcCChHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHh---HHHHHHHHHhc
Q 043608 340 ILTMYAKCSVLCNALLVFKELGK---NADSVSWNSIIAACLQHNQAEELFRLFSRMLASQIKPDHI---TFNDVMGACAK 413 (579)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~ 413 (579)
.+...+..|+.+....+++.-+. .++...++.+. ..+..|+.+- ++.+.+.|..++.. ..+.+ ...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHH-HHHHH
Confidence 35566778888888888876421 12333333333 3345565543 44445556544432 22233 33344
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHHcCCHHHHHHHHhhCCC
Q 043608 414 MASLEMVTQLHCYITKTGLAFDVFV--MNGLMDIYIKCGSLGSARKLFNFMEN 464 (579)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~ 464 (579)
.|+.+- ++.+.+.|..++... -...+...+..|+.+-+..+++.-..
T Consensus 83 ~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 131 (231)
T 3aji_A 83 AGXDEI----VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131 (231)
T ss_dssp HTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCHHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 555543 334444454443211 11233444566777766666665443
No 342
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.40 E-value=2.1e+02 Score=21.86 Aligned_cols=62 Identities=6% Similarity=0.090 Sum_probs=40.6
Q ss_pred HHHHHCCCCCcHhHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCH
Q 043608 390 SRMLASQIKPDHITFNDVMGACAKMA-SLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSL 452 (579)
Q Consensus 390 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 452 (579)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346667777665543 3344455555 5667888888888777667776666666777766654
No 343
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=27.20 E-value=3.5e+02 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCC
Q 043608 440 NGLMDIYIKCGSLGSARKLFNFMENP 465 (579)
Q Consensus 440 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 465 (579)
+.++.-|...++.++|.+.++++..|
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p 246 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVP 246 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCT
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCC
Confidence 44555555666666666666666544
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.81 E-value=84 Score=23.91 Aligned_cols=12 Identities=0% Similarity=-0.092 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 043608 519 EEGLHLYRIMEN 530 (579)
Q Consensus 519 ~~a~~~~~~~~~ 530 (579)
-.|.++++.+.+
T Consensus 34 ~ta~ei~~~l~~ 45 (145)
T 3eyy_A 34 ATPDDILGEVRK 45 (145)
T ss_dssp BCHHHHHHHHHT
T ss_pred CCHHHHHHHHHh
Confidence 344444444443
No 345
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.54 E-value=1.6e+02 Score=20.18 Aligned_cols=38 Identities=26% Similarity=0.188 Sum_probs=30.1
Q ss_pred CCCHHHHHHHhcccCCCcHhhHHHHHHHHHhcCChHHH
Q 043608 184 FDRILDARNVFSGIARKDVTSWGSMIAAFSKLGYELEA 221 (579)
Q Consensus 184 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 221 (579)
....+.|..+++.++.+...+|..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 56678888888888888888888888888887764433
No 346
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.38 E-value=1.4e+02 Score=19.61 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=37.9
Q ss_pred HHHHhCCCCCChHHHHHHHHHhhccc-chhhHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 043608 288 SEMRDRELLPDGLTVHSLLCACIGRL-TLYQGMQVHSYIIKMGFDSNVPVCNAILTMYAKCSV 349 (579)
Q Consensus 288 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 349 (579)
+.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..+....++.+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34556777666544 34455555544 556677888888777666666666666666666554
No 347
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.09 E-value=98 Score=22.97 Aligned_cols=37 Identities=8% Similarity=-0.026 Sum_probs=16.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHhHHHHHHHHHhcc
Q 043608 378 QHNQAEELFRLFSRMLASQIKPDHITFNDVMGACAKM 414 (579)
Q Consensus 378 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 414 (579)
..+..-.|.++++.+.+.+...+..|....+..+...
T Consensus 22 ~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 22 TLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp HCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3333444555555555444444444444444444333
No 348
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.92 E-value=64 Score=20.03 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHCCCCCCcccHHHHHHHh-cCCC
Q 043608 117 ENDAIKLYIQMLQSGVMPGQFTFGSIIKAC-SGLG 150 (579)
Q Consensus 117 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~-~~~~ 150 (579)
.++|.+.|.+|++..-.++.-||...++.. +...
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 357777887777665555666777777766 4433
No 349
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.24 E-value=1.6e+02 Score=22.07 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=9.5
Q ss_pred HHHHhcCChhHHHHHHHh
Q 043608 546 DLLARAGCVHEAEDFINQ 563 (579)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~ 563 (579)
....+.|+.+-+.-++++
T Consensus 138 ~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 138 ELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHSCCHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHhh
Confidence 344456666555555543
No 350
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.17 E-value=1.8e+02 Score=20.32 Aligned_cols=58 Identities=12% Similarity=0.248 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCCcHhHHHHHHHHHhccCC-hH-HHHHHHHH-HHHcCCCCchhHHHHH
Q 043608 385 LFRLFSRMLASQIKPDHITFNDVMGACAKMAS-LE-MVTQLHCY-ITKTGLAFDVFVMNGL 442 (579)
Q Consensus 385 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~-~a~~~~~~-~~~~~~~~~~~~~~~l 442 (579)
+.++.+++..-|+.|+.....-++..|...+- .+ -+.+++.. ....|..|+....+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 45566666667777777776666666654442 11 12222221 1244666666555543
No 351
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.67 E-value=2.5e+02 Score=21.88 Aligned_cols=53 Identities=15% Similarity=-0.070 Sum_probs=31.6
Q ss_pred hcCCcHHHHHHHHHHHhCCCCC--ChhHHHHHHH-H-----hhccCchHHHHHHHHHHHHh
Q 043608 479 QFGCGDEALKLFTRMRSLGVSP--NLVTLVGVLT-A-----CSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 479 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~~ 531 (579)
..|++-+|-++|+..=.....+ ....|..||. . ..+.|+...|..++++....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4467777777777665543334 3445555555 2 23567777777777776653
No 352
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.03 E-value=1.2e+02 Score=22.78 Aligned_cols=50 Identities=12% Similarity=0.182 Sum_probs=39.3
Q ss_pred HHHHHHhhcchhhhhhhhHHHHHHHhCCCCChhHHHHHHHHHHccCChhh
Q 043608 39 AGLISACSSLRSLQLGRKVHDHILLSKCQPDVVLQNHILNMYGKCGSLED 88 (579)
Q Consensus 39 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 88 (579)
..++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+.+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45677777777788899999999988767777777777888888886544
No 353
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.70 E-value=3.9e+02 Score=23.72 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=50.5
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHhhcccchhhHHHHHHHHHHcCCCCCchhHHHHHHHH----HhcCChHHHHHHHHHc
Q 043608 285 SLFSEMRDRELLPDGLTVHSLLCACIGRLTLYQGMQVHSYIIKMGFDSNVPVCNAILTMY----AKCSVLCNALLVFKEL 360 (579)
Q Consensus 285 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~ 360 (579)
++++.+.+.|+.|...++..++..+.+.=.++.+..+++.+...|...-..+..+++..+ .+..+.++....++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 456667778888988888888888888878899999999988887542222222222221 2234666666666663
No 354
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.67 E-value=3e+02 Score=22.38 Aligned_cols=51 Identities=6% Similarity=-0.036 Sum_probs=26.2
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCC---------CcchhHHHHHHHHhcCChhHHHHHHHhh
Q 043608 512 CSHVGLVEEGLHLYRIMENEYGIIP---------TREHCSCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
.+..|+.+-+..+++.+.+. |-.+ +..-.+. +....+.|+.+-+.-++++-
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 34556666665566655554 3322 2222232 34445666666666666554
No 355
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.66 E-value=1.5e+02 Score=22.00 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCch
Q 043608 472 SLILGYAQFGCGDEALKLFTRMRSLGVSPNLVTLVGVLTACSHVGLV 518 (579)
Q Consensus 472 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 518 (579)
.++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555556666777888888888776666666655556666666543
No 356
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.63 E-value=3e+02 Score=22.37 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=23.9
Q ss_pred HhhccCchHHHHHHHHHHHHhhCCCCCcchh--HHHHHHHHhcCChhHHHHHHHhh
Q 043608 511 ACSHVGLVEEGLHLYRIMENEYGIIPTREHC--SCVVDLLARAGCVHEAEDFINQM 564 (579)
Q Consensus 511 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 564 (579)
..+..|+.+-+..++ +. |..++.... ..-+....+.|+.+-+.-+++..
T Consensus 183 ~A~~~~~~~~v~~Ll----~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 183 WAVLAGNTTVISLLL----EA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHTCHHHHHHHH----HH-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHH----Hc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 344556655444333 33 444443211 12345556677766665555544
No 357
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.20 E-value=57 Score=26.28 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=18.3
Q ss_pred HHHHHHHHccCChhhHHHhhcCCC
Q 043608 74 NHILNMYGKCGSLEDARMGFDKMP 97 (579)
Q Consensus 74 ~~l~~~~~~~g~~~~A~~~~~~~~ 97 (579)
...+..|.+.|.+++|.++|++.-
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHccchHHHHHHHHHHh
Confidence 355667888888888888888843
No 358
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.53 E-value=79 Score=23.86 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=32.7
Q ss_pred hhhhHhhhcCChhHHHHHHHHhhhhcCCCCCcccHHHHHHHhhcchhh
Q 043608 4 DYVSSLCKQNLYNEALVAYDFSQNNTNIRIRPSTYAGLISACSSLRSL 51 (579)
Q Consensus 4 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 51 (579)
.++..+...+.+-.|.++++.+.+. +...+..|-...+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCCE
Confidence 4677777777888899999988776 5555666655566666665543
No 359
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.38 E-value=3.2e+02 Score=22.26 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=7.8
Q ss_pred hccCchHHHHHHHHHHH
Q 043608 513 SHVGLVEEGLHLYRIME 529 (579)
Q Consensus 513 ~~~g~~~~a~~~~~~~~ 529 (579)
...|+...+.++.+.+.
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444444444444443
No 360
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=22.04 E-value=59 Score=20.16 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=16.8
Q ss_pred CChhHHHHHHHHhhhhcCCCCCc
Q 043608 13 NLYNEALVAYDFSQNNTNIRIRP 35 (579)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~ 35 (579)
-+++.|+..|..+...+.+||+.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 36778888888887765677654
No 361
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.71 E-value=3.2e+02 Score=22.03 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=13.5
Q ss_pred HHHHHhcCChhHHHHHHHhhcCCC
Q 043608 545 VDLLARAGCVHEAEDFINQMACDA 568 (579)
Q Consensus 545 ~~~~~~~g~~~~A~~~~~~~~~~~ 568 (579)
+....+.|+.+-+.-++++.+..+
T Consensus 178 L~~A~~~~~~~~v~~Ll~~~ga~~ 201 (228)
T 2dzn_A 178 LFHALAEGHGDAAVLLVEKYGAEY 201 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCC
Confidence 344456677666666665554433
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.71 E-value=5.7e+02 Score=27.03 Aligned_cols=105 Identities=13% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHcCCHHHHHHHHhhCCC----------------------
Q 043608 407 VMGACAKMASLEMVTQLHCYITKTGLAFDVFVMNGLMDIYIKCGSLGSARKLFNFMEN---------------------- 464 (579)
Q Consensus 407 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------- 464 (579)
++..|...+..+-+.++... ++.++..--.+..+|...|++++|..+|+++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Q ss_pred ----CChhhHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCChh----HHHHHHHHhhccC
Q 043608 465 ----PDVVSWSSLILGYAQFGCGDEALKLFTRMRSLGVSPNLV----TLVGVLTACSHVG 516 (579)
Q Consensus 465 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g 516 (579)
....-|..++..+-+.+-++-+.++-+..++.--.-|.. .|..+.++.+..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 363
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=21.49 E-value=4.8e+02 Score=24.00 Aligned_cols=126 Identities=9% Similarity=-0.046 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHhcccCCC--------cHhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCCChHhHHH
Q 043608 173 AQNALIAMYTKFDRILDARNVFSGIARK--------DVTSWGSMIAAFSKL-GYELEALCHFNEMLHHGAYQPNEFIFGS 243 (579)
Q Consensus 173 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 243 (579)
....|...|.+.|+.++..+++.....- .......++..+... +..+.-.++..+..+-.
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a----------- 89 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA----------- 89 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-----------
Confidence 3445777788888888887777655431 223444555555442 22233333333332211
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhH------HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChH-----HHHHHHHHhhcc
Q 043608 244 VFSACSNFARILFNEIDSPDLASW------NALIAGVASHSNANEAMSLFSEMRDRELLPDGL-----TVHSLLCACIGR 312 (579)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~------~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~ 312 (579)
...-.+| .-++..|...|++.+|.+++..+.+.--..|.. .+..-+..|...
T Consensus 90 -----------------~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~ 152 (394)
T 3txn_A 90 -----------------KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 152 (394)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence 0111112 246788889999999999888887642222221 222333444555
Q ss_pred cchhhHHHHHHHHH
Q 043608 313 LTLYQGMQVHSYII 326 (579)
Q Consensus 313 ~~~~~a~~~~~~~~ 326 (579)
++..++...+....
T Consensus 153 ~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 153 SNLPKARAALTSAR 166 (394)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 55555555555443
No 364
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.38 E-value=4.8e+02 Score=23.97 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=25.0
Q ss_pred HHHhhcchhhhhhhhHHHHHHHhCCCCChhH--HHHHHHHHHccCChhhHHHhhcCC
Q 043608 42 ISACSSLRSLQLGRKVHDHILLSKCQPDVVL--QNHILNMYGKCGSLEDARMGFDKM 96 (579)
Q Consensus 42 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 96 (579)
+...+..|+.+ +++.+++.|..++... ....+...+..|+.+-+..+++.-
T Consensus 18 L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g 70 (437)
T 1n11_A 18 LHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70 (437)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 34444556554 4445555565444221 122334445567766666666543
No 365
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.02 E-value=3.8e+02 Score=22.68 Aligned_cols=127 Identities=10% Similarity=-0.038 Sum_probs=73.8
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhcC-CcHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 043608 433 AFDVFVMNGLMDIYIKCGSLGSARKLFNFMENPDVVSWSSLILGYAQFG-CGDEALKLFTRMRSLGVSPNLVTLVGVLTA 511 (579)
Q Consensus 433 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 511 (579)
.++..+-...+.++.+.++.+....+...+.+++...-...+.++...| +...+...+..+.+ .++...-...+.+
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~a 215 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIG 215 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 4666666777777777776443444444455677766666666666655 34556666666654 3566666667777
Q ss_pred hhccCchHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHhcCChhHHHHHHHhh-cCCCCh
Q 043608 512 CSHVGLVEEGLHLYRIMENEYGIIPTREHCSCVVDLLARAGCVHEAEDFINQM-ACDADI 570 (579)
Q Consensus 512 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 570 (579)
+...|+.. +...+..+.+. ++ .-...+.++.+.|+ +++...+.++ ...+|.
T Consensus 216 L~~~~~~~-~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~~ 267 (280)
T 1oyz_A 216 LSYRKDKR-VLSVLCDELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFDDN 267 (280)
T ss_dssp HHHTTCGG-GHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSSCC
T ss_pred HHHhCCHh-hHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCCCc
Confidence 77777644 44444334432 33 44556778888887 4566666655 333443
No 366
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.96 E-value=3.4e+02 Score=22.01 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=30.9
Q ss_pred HHHHHHHhcccCCC-cH-------hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 043608 187 ILDARNVFSGIARK-DV-------TSWGSMIAAFSKLGYELEALCHFNEMLHH 231 (579)
Q Consensus 187 ~~~a~~~~~~~~~~-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 231 (579)
++.|+.+++.+.+. +. ..-...+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 56778888777653 21 12234456799999999999999996544
No 367
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.92 E-value=1.6e+02 Score=18.23 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=16.2
Q ss_pred cCCChHHHHHHHHHHHhCCCCCC
Q 043608 276 SHSNANEAMSLFSEMRDRELLPD 298 (579)
Q Consensus 276 ~~~~~~~a~~~~~~m~~~g~~p~ 298 (579)
..|+.+.|+..+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 45778888888777776665554
No 368
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.50 E-value=1.3e+02 Score=20.96 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=19.2
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhcCCcH
Q 043608 451 SLGSARKLFNFMENPDVVSWSSLILGYAQFGCGD 484 (579)
Q Consensus 451 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 484 (579)
..+.|.++++.+.......|..++.++...|+.+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 4555666666655555556666666665545433
No 369
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.34 E-value=3.5e+02 Score=21.96 Aligned_cols=89 Identities=7% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHcC---CChHHHHHHHHHHHhCCCCCChHHHHHHHHHhhcccc-----hhhHHHHHHHHHHcCCCCCchhHHHHH
Q 043608 270 LIAGVASH---SNANEAMSLFSEMRDRELLPDGLTVHSLLCACIGRLT-----LYQGMQVHSYIIKMGFDSNVPVCNAIL 341 (579)
Q Consensus 270 li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (579)
+|+++.|+ .+.+.|+-.+-.|.+.| .|....-..++.+.-.-|. ...|...++.....|.+--.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhcCChHHHHHHHHH
Q 043608 342 TMYAKCSVLCNALLVFKE 359 (579)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~ 359 (579)
-.++..-+-..+...++.
T Consensus 96 iyLA~aPKSNs~y~A~~~ 113 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDA 113 (204)
T ss_dssp HHHHHSCCCCHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHH
No 370
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=20.13 E-value=2e+02 Score=25.78 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=24.6
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 043608 489 LFTRMRSLGVSPNLVTLVGVLTACSHVGLVEEGLHLYRIMENE 531 (579)
Q Consensus 489 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 531 (579)
+++.+.+.|+.|...++..++..+...=.++.+.++|+.+...
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 3344455566666666555555555555566666666666544
No 371
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.03 E-value=93 Score=26.20 Aligned_cols=20 Identities=5% Similarity=-0.177 Sum_probs=9.0
Q ss_pred hcchhhhhhhhHHHHHHHhC
Q 043608 46 SSLRSLQLGRKVHDHILLSK 65 (579)
Q Consensus 46 ~~~~~~~~a~~~~~~~~~~~ 65 (579)
++.|+.+....+++.+.+.|
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 33444444444444444444
Done!