BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043610
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QBO|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Yersinia Pestis Co92
pdb|3QBO|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Yersinia Pestis Co92
Length = 364
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/362 (51%), Positives = 238/362 (65%), Gaps = 4/362 (1%)
Query: 70 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLN 129
+V+NF+AGPA LP +VL +AQ EL +W G G SVME+SHR KEF + E++E DLR LLN
Sbjct: 6 QVYNFSAGPAMLPVEVLRRAQQELRDWHGLGTSVMEVSHRSKEFMQVAEESEKDLRDLLN 65
Query: 130 IPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVI-WS 188
+P Y VLF GGA QFAAVPLNL + DY+ G W A KEAQK+C P VI +
Sbjct: 66 VPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYVDGGYWAHSAIKEAQKYCTPNVIDVT 125
Query: 189 GKAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCS 248
T I + + +A Y+H C NETI G+ E P N ++VAD SS+ S
Sbjct: 126 THDNGLTGIQPMKQWKLSDNAAYVHYCPNETIDGIAIDEQPDFGNK--VVVADFSSSILS 183
Query: 249 KPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTP 308
+P+DV+R+GVIYAGAQKN+GP+G+T+VIVR+DLLG A P +LDYKI +N+S++NTP
Sbjct: 184 RPIDVSRYGVIYAGAQKNIGPAGLTLVIVREDLLGKAHTALPSILDYKILADNDSMFNTP 243
Query: 309 PCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYKCPVEKSVRSFMNV 368
P + Y+ GLVF++L E GGL E+EK N+ KAELLY ID GFY+ V + RS+MNV
Sbjct: 244 PTFAWYLSGLVFKWLKEQGGLGEMEKRNQAKAELLYGAID-RTGFYRNDVAITNRSWMNV 302
Query: 369 PFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 428
PF + + L + LKGHR GGMRASIYNAMP+ GV+ L FM DF+ +
Sbjct: 303 PFQMADASLDKLFLSEAEAQGLQALKGHRVAGGMRASIYNAMPIEGVKALTDFMADFERR 362
Query: 429 HA 430
H
Sbjct: 363 HG 364
>pdb|1BJO|A Chain A, The Structure Of Phosphoserine Aminotransferase From E.
Coli In Complex With Alpha-Methyl-L-Glutamate
Length = 360
Score = 357 bits (917), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 234/362 (64%), Gaps = 3/362 (0%)
Query: 70 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLN 129
++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF + E+AE D R LLN
Sbjct: 1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLN 60
Query: 130 IPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSG 189
+P Y VLF GG QFAAVPLN+ DY+ G W A KEA+K+C P V +
Sbjct: 61 VPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAK 120
Query: 190 -KAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCS 248
+ + + + +A Y+H C NETI G+ E P ++ AD SS S
Sbjct: 121 VTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADV-VVAADFSSTILS 179
Query: 249 KPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTP 308
+P+DV+R+GVIYAGAQKN+GP+G+TIVIVR+DLLG A P +LDY I ++N S++NTP
Sbjct: 180 RPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTP 239
Query: 309 PCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYKCPVEKSVRSFMNV 368
P + Y+ GLVF++L GG+ E++K+N++KAELLY VID S+ FY+ V K RS MNV
Sbjct: 240 PTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKRNRSRMNV 298
Query: 369 PFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 428
PF L S L + LKGHR VGGMRASIYNAMPL GV+ L FM +F+ +
Sbjct: 299 PFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 358
Query: 429 HA 430
H
Sbjct: 359 HG 360
>pdb|3QM2|A Chain A, 2.25 Angstrom Crystal Structure Of Phosphoserine
Aminotransferase (Serc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium
pdb|3QM2|B Chain B, 2.25 Angstrom Crystal Structure Of Phosphoserine
Aminotransferase (Serc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium
Length = 386
Score = 357 bits (916), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 180/368 (48%), Positives = 236/368 (64%), Gaps = 3/368 (0%)
Query: 64 QSGQEDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESD 123
QS +VFNF++GPA LP +VL AQ EL +W G G SVME+SHRGKEF + E+AE D
Sbjct: 21 QSNAMAQVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQD 80
Query: 124 LRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNP 183
R LLNIP Y VLF GG QFA VPLNL DY+ G W A KEA+K+C P
Sbjct: 81 FRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAP 140
Query: 184 QVIWSG-KAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADM 242
Q+I + + + + + +A YLH C NETI G+ E P ++ AD
Sbjct: 141 QIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFGPEV-VVTADF 199
Query: 243 SSNFCSKPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENN 302
SS S P+DV+R+GVIYAGAQKN+GP+G+T+VIVR+DLLG A + P +LDY + ++N+
Sbjct: 200 SSTILSAPLDVSRYGVIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLNDND 259
Query: 303 SLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYKCPVEKSV 362
S++NTPP + Y+ GLVF++L GG+ + K+N++KAELLY VID S+ FY+ V ++
Sbjct: 260 SMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQAN 318
Query: 363 RSFMNVPFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFM 422
RS MNVPF L + L + LKGHR VGGMRASIYNAMP+ GV+ L FM
Sbjct: 319 RSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFM 378
Query: 423 KDFQAKHA 430
DF+ +H
Sbjct: 379 IDFERRHG 386
>pdb|1BJN|A Chain A, Structure Of Phosphoserine Aminotransferase From
Escherichia Coli
pdb|1BJN|B Chain B, Structure Of Phosphoserine Aminotransferase From
Escherichia Coli
pdb|1BJO|B Chain B, The Structure Of Phosphoserine Aminotransferase From E.
Coli In Complex With Alpha-Methyl-L-Glutamate
Length = 360
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/362 (49%), Positives = 233/362 (64%), Gaps = 3/362 (0%)
Query: 70 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLN 129
++FNF++GPA LP +VL +AQ EL +W G G SVME+SHRGKEF + E+AE D R LLN
Sbjct: 1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLN 60
Query: 130 IPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSG 189
+P Y VLF GG QFAAVPLN+ DY+ G W A KEA+K+C P V +
Sbjct: 61 VPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAK 120
Query: 190 -KAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCS 248
+ + + + +A Y+H C NETI G+ E P ++ AD SS S
Sbjct: 121 VTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADV-VVAADFSSTILS 179
Query: 249 KPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTP 308
+P+DV+R+GVIYAGAQ N+GP+G+TIVIVR+DLLG A P +LDY I ++N S++NTP
Sbjct: 180 RPIDVSRYGVIYAGAQXNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTP 239
Query: 309 PCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYKCPVEKSVRSFMNV 368
P + Y+ GLVF++L GG+ E++K+N++KAELLY VID S+ FY+ V K RS MNV
Sbjct: 240 PTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSD-FYRNDVAKRNRSRMNV 298
Query: 369 PFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAK 428
PF L S L + LKGHR VGGMRASIYNAMPL GV+ L FM +F+ +
Sbjct: 299 PFQLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 358
Query: 429 HA 430
H
Sbjct: 359 HG 360
>pdb|3E77|A Chain A, Human Phosphoserine Aminotransferase In Complex With Plp
pdb|3E77|B Chain B, Human Phosphoserine Aminotransferase In Complex With Plp
pdb|3E77|C Chain C, Human Phosphoserine Aminotransferase In Complex With Plp
Length = 377
Score = 352 bits (902), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 182/355 (51%), Positives = 235/355 (66%), Gaps = 9/355 (2%)
Query: 81 LPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQ 140
LP VLL+ Q EL +++G G+SV+EMSHR +F II E+ +R LL +P Y V+FLQ
Sbjct: 24 LPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQ 83
Query: 141 GGATTQFAAVPLNLC--TPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSGKAEKYTKIP 198
GG QF+AVPLNL DY+VTG+W KA +EA+KF ++ K YTKIP
Sbjct: 84 GGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHP-KLGSYTKIP 142
Query: 199 NFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSKPVDVTRFGV 258
+ NPDA Y++ CANET+HGVEF P K + +LV DMSSNF SKPVDV++FGV
Sbjct: 143 DPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGA--VLVCDMSSNFLSKPVDVSKFGV 200
Query: 259 IYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPPCYCIYMCGL 318
I+AGAQKNVG +GVT+VIVR DLLG A + P +L+YK+ N+SLYNTPPC+ IY+ GL
Sbjct: 201 IFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGL 260
Query: 319 VFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYKCPVEKSVRSFMNVPFTL--EKSD 376
V E++ GG +EK++ K++ +Y +ID S GFY CPVE RS MN+PF + K D
Sbjct: 261 VLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGD 320
Query: 377 --LXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 429
L M+ LKGHRSVGG+RAS+YNA+ + V+KL AFMK F H
Sbjct: 321 DALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375
>pdb|1BT4|A Chain A, Phosphoserine Aminotransferase From Bacillus Circulans
Subsp. Alkalophilus
pdb|1W3U|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Circulans Var. Alkalophilus
pdb|2C0R|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Circulans Var. Alkalophilus At Ph 8.5
pdb|2C0R|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Circulans Var. Alkalophilus At Ph 8.5
Length = 362
Score = 347 bits (891), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 233/358 (65%), Gaps = 2/358 (0%)
Query: 69 DRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALL 128
+R +NF AGPA LP +VL +AQ+E +++ +GMS+MEMSHRG ++++ +A++ L ALL
Sbjct: 3 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALL 62
Query: 129 NIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWS 188
P Y VLF+QGGA+TQFA +P+N +Y++TGSW KA KEA+ + V S
Sbjct: 63 GNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAAS 122
Query: 189 GKAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCS 248
+A Y +P ++ +A YLH+ +NETI G +FK +P + L+ DMSS+ S
Sbjct: 123 SEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKAFPDTGSVP--LIGDMSSDILS 180
Query: 249 KPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTP 308
+P D+ +FG++YAGAQKN+GPSGVT+VIVR+DL+ + P ML Y + +NNSLYNTP
Sbjct: 181 RPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTP 240
Query: 309 PCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYKCPVEKSVRSFMNV 368
P + IYM V +++ E GGL V++ NRKKA L+Y+ ID S GFY+ V+ RS MN+
Sbjct: 241 PSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNI 300
Query: 369 PFTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 426
F L +L V LKGHRSVGG+RASIYNA+P E LV FM+ F+
Sbjct: 301 TFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFK 358
>pdb|1W23|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|1W23|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|2BHX|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BHX|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BI1|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI1|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI2|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI2|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI3|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI3|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI5|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI5|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI9|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BI9|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BIA|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
pdb|2BIA|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
Length = 360
Score = 341 bits (874), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 165/357 (46%), Positives = 230/357 (64%), Gaps = 2/357 (0%)
Query: 70 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLN 129
+VFNF AGP+ LP+ L +AQ EL N+ + MSVME+SHR + ++ + E+A++ LR LL
Sbjct: 3 QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ 62
Query: 130 IPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSG 189
IP +Y +LFLQGGA+ QF +P+NL T +Y++TGSW +KA KEA+ + S
Sbjct: 63 IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAAST 122
Query: 190 KAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSK 249
KA Y IP+F + N + YLHI +N TI+G +++ +P ++ L+ADMSS+ S+
Sbjct: 123 KANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAP--LIADMSSDILSR 180
Query: 250 PVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPP 309
P+ V +FG+IYAGAQKN+GPSGVT+VIV+KDLL ++ P ML Y H +++SLYNTPP
Sbjct: 181 PLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPP 240
Query: 310 CYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYKCPVEKSVRSFMNVP 369
+ IYM V +++ +LGG + K N +KA+++Y+ ID SNGFY EK RS MNV
Sbjct: 241 TFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVT 300
Query: 370 FTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 426
F L +L V L GHRSVGG RASIYNA+P+ L M F+
Sbjct: 301 FNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFK 357
>pdb|2BIE|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIE|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIG|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
pdb|2BIG|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
Length = 361
Score = 341 bits (874), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 165/357 (46%), Positives = 230/357 (64%), Gaps = 2/357 (0%)
Query: 70 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLN 129
+VFNF AGP+ LP+ L +AQ EL N+ + MSVME+SHR + ++ + E+A++ LR LL
Sbjct: 4 QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ 63
Query: 130 IPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFCNPQVIWSG 189
IP +Y +LFLQGGA+ QF +P+NL T +Y++TGSW +KA KEA+ + S
Sbjct: 64 IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAAST 123
Query: 190 KAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCSK 249
KA Y IP+F + N + YLHI +N TI+G +++ +P ++ L+ADMSS+ S+
Sbjct: 124 KANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAP--LIADMSSDILSR 181
Query: 250 PVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDKTPLMLDYKIHDENNSLYNTPP 309
P+ V +FG+IYAGAQKN+GPSGVT+VIV+KDLL ++ P ML Y H +++SLYNTPP
Sbjct: 182 PLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPP 241
Query: 310 CYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYKCPVEKSVRSFMNVP 369
+ IYM V +++ +LGG + K N +KA+++Y+ ID SNGFY EK RS MNV
Sbjct: 242 TFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVT 301
Query: 370 FTLEKSDLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 426
F L +L V L GHRSVGG RASIYNA+P+ L M F+
Sbjct: 302 FNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFK 358
>pdb|3M5U|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Campylobacter Jejuni
pdb|3M5U|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Campylobacter Jejuni
Length = 361
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/364 (42%), Positives = 216/364 (59%), Gaps = 10/364 (2%)
Query: 70 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLN 129
R NF+AGP+ LP ++L +AQ EL +++G G S+ E+SHR K F+ + A+ + L
Sbjct: 5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIXEISHRTKVFEEVHFGAQEKAKKLYE 64
Query: 130 IPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKF-CNPQVIWS 188
+ +Y VLFLQGGA+ QFA +P NL N +Y TG W KA KEAQ N + + S
Sbjct: 65 LNDDYEVLFLQGGASLQFAXIPXNLAL-NGVCEYANTGVWTKKAIKEAQILGVNVKTVAS 123
Query: 189 GKAEKYTKIPNFDALEQNPDAKYLHICANETIHGVEFKEYPSAKNSTGILVADMSSNFCS 248
+ + IP +E + +A Y +IC+N TI+G +++ YP K L+ D SS+F S
Sbjct: 124 SEESNFDHIPR---VEFSDNADYAYICSNNTIYGTQYQNYPKTKTP---LIVDASSDFFS 177
Query: 249 KPVDVTRFGVIYAGAQKNVGPSGVTIVIVRKDLLGNAQDK-TPLMLDYKIHDENNSLYNT 307
+ VD + + Y G QKN G SG++ + +RKD L +++K P L+Y H EN SL+NT
Sbjct: 178 RKVDFSNIALFYGGVQKNAGISGLSCIFIRKDXLERSKNKQIPSXLNYLTHAENQSLFNT 237
Query: 308 PPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGFYKCPVEKSVRSFMN 367
PP + IY L ++LL GGL++V + N +KA LY ID SNGFYK +K RS N
Sbjct: 238 PPTFAIYXFNLEXDWLLNQGGLDKVHEKNSQKATXLYECIDLSNGFYKGHADKKDRSLXN 297
Query: 368 VPFTLEKS-DLXXXXXXXXXXXXMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQ 426
V F + K+ DL + LKGHR +GG+RASIYNA+ L V+ L F K+FQ
Sbjct: 298 VSFNIAKNKDLEPLFVKEAEEAGXIGLKGHRILGGIRASIYNALNLDQVKTLCEFXKEFQ 357
Query: 427 AKHA 430
K+A
Sbjct: 358 GKYA 361
>pdb|2FYF|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|2FYF|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
Length = 398
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 112/295 (37%), Gaps = 25/295 (8%)
Query: 62 QIQSGQEDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAE 121
+I + + R F +GP+ KV L+ +L + ++ SHR K+++ +
Sbjct: 32 EIPTAIKPRDGRFGSGPS----KVRLE---QLQTLTTTAAALFGTSHRQAPVKNLVGRVR 84
Query: 122 SDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKFC 181
S L L ++P Y V+ GGAT + A L ++ G + K K
Sbjct: 85 SGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKRSL--HLTYGEFSAKFASAVSK-- 140
Query: 182 NPQVIWSGKAEKYTKIPNFDALEQ-NPDAKYLHICANETIHGVEFKEYPSAKNSTGILVA 240
NP V G+ T P Q +P + NET GV + ++V
Sbjct: 141 NPFV---GEPIIITSDPGSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGSDDALVVI 197
Query: 241 DMSSNFCSKPVDVTRFGVIYAGAQKNVGPSGVTIVIV-------RKDLLGNAQDKTPLML 293
D +S PVD+ Y QKN G + + R + + P L
Sbjct: 198 DATSGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFL 257
Query: 294 DYKIHDEN---NSLYNTPPCYCIYMCGLVFEYLLELGGLNEVEKMNRKKAELLYN 345
I EN N YNTP + + ++L+ GGL+ K ++ LY+
Sbjct: 258 SLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYS 312
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 20/259 (7%)
Query: 101 MSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDP 160
M V SHR KE++ + LR L + ++ VL + T A N +
Sbjct: 39 MKVQMFSHRSKEYRKVHMDTVERLREFLEV-EKGEVLLVPSSGTGIMEASIRNGVSKGGK 97
Query: 161 VDYIVTGSWGDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFD-ALEQNPDAKYLHICANET 219
V + G++G + + + V+ + K K + D AL +NPD + + I NET
Sbjct: 98 VLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNET 157
Query: 220 IHGVEFKEYPS----AKNSTGILVADMSSNFCSKPVDVTRFG--VIYAGAQKNVG-PSGV 272
GV P AK ++ D S + ++G V+++ +QK G P G+
Sbjct: 158 STGV-LNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGL 216
Query: 273 TIVIVRKDLLGNAQD--------KTPLMLDYKIHDENNSLYNTPPCYCIYMCGLVFEYLL 324
I + L A+ PL + Y E S +TPP ++ + +
Sbjct: 217 AIGAFSERFLEIAEKMPERGWYFDIPLYVKY--LKEKESTPSTPPMPQVFGINVALRIIE 274
Query: 325 ELGGLNEVEKMNRKKAELL 343
++GG + +M K+A+++
Sbjct: 275 KMGGKEKWLEMYEKRAKMV 293
>pdb|3FFR|A Chain A, Crystal Structure Of A Phosphoserine Aminotransferase Serc
(chu_0995) From Cytophaga Hutchinsonii Atcc 33406 At
1.75 A Resolution
Length = 362
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 104/279 (37%), Gaps = 55/279 (19%)
Query: 106 MSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVD--- 162
+SHR K+F+ + + A +L+ LL +P Y VLFL + T+ + C
Sbjct: 34 ISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFL--ASATEIWERIIQNCVEKKSFHCVN 91
Query: 163 -------YIVTGSWGDKAFKEAQKFCNPQVIWSGKAEKYTKIPNFDALEQNPDAKYLHIC 215
Y G G +A+KE F G +P DA+ + +
Sbjct: 92 GSFSKRFYEFAGELGREAYKEEAAFGK------GFYPADITVP--------ADAEIICLT 137
Query: 216 ANETIHGVE--------FKEYPSAKNSTGILVADMSSNFCSKPVDVTRFGVIYAGAQKNV 267
NET GV F++ KN ++ D S+ D T+ ++ Q
Sbjct: 138 HNETSSGVSXPVEDINTFRD----KNKDALIFVDAVSSLPYPKFDWTKIDSVFFSVQXCF 193
Query: 268 G-PSGVTIVIVR-------KDLLGNAQD-----KTPLMLDYKIHDENNSLYNTPPCYCIY 314
G P+G+ + I+ K LL + P L+ N TP I+
Sbjct: 194 GLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSXLE---KARVNQTPETPNAXNIF 250
Query: 315 MCGLVFEYLLELGGLNEVEKMNRKKAELLYNVIDGSNGF 353
+ G V L++ + + K +KA L+ I+ S F
Sbjct: 251 LLGKVTGDXLQISA-DGIRKQTEEKAALINTYIESSKVF 288
>pdb|1M32|A Chain A, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|B Chain B, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|C Chain C, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|D Chain D, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|E Chain E, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
pdb|1M32|F Chain F, Crystal Structure Of 2-Aminoethylphosphonate Transaminase
Length = 366
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 13/227 (5%)
Query: 116 IIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFK 175
++E+ L AL + Y+ + LQG + AV + P D V + G++G + +
Sbjct: 38 VVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARXVE 97
Query: 176 EAQKFCNPQVIWSGKAEKYTKIPNFDA-LEQNPDAKYLHICANETIHGV--EFKEYPSAK 232
A + + DA L +P ++ +ET G E +
Sbjct: 98 XAGLXGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAXVHSETTTGXLNPIDEVGALA 157
Query: 233 NSTG-ILVADMSSNFCSKPVDVTRFGVIY--AGAQKNV-GPSGVTIVIVRKDLLGNAQDK 288
+ G + D S+F P D+ + Y + A K + G G VI R+ L +
Sbjct: 158 HRYGKTYIVDAXSSFGGIPXDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGH 217
Query: 289 T-PLMLD----YKIHDENNSLYN-TPPCYCIYMCGLVFEYLLELGGL 329
+ L LD ++ ++N+ + T P + + + L + GG+
Sbjct: 218 SRSLSLDLYAQWRCXEDNHGKWRFTSPTHTVLAFAQALKELAKEGGV 264
>pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUF|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUI|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUI|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUU|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
pdb|2HUU|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
Length = 393
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 21/206 (10%)
Query: 77 GPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSV 136
GP+N P++VL MS + H E I++ + +R L +
Sbjct: 26 GPSNAPQRVL------------DAMSRPILGHLHPETLKIMDDIKEGVRYLFQT-NNIAT 72
Query: 137 LFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWGDKAFKEAQKF-CNPQVIWSGKAEKYT 195
L A NL D + TG WGD++ A ++ + +V+ S + +
Sbjct: 73 FCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLS 132
Query: 196 KIPNFDALE-QNPDAKYLHICANET--IHGVEFKEYPSAKNSTGILVADMSSNFCSKPVD 252
DAL P +L + T + G+E +++ +L+ D ++ P+
Sbjct: 133 LDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNC-LLIVDTVASLGGAPMF 191
Query: 253 VTRFGV--IYAGAQKNVG-PSGVTIV 275
+ R+ + +Y G+Q +G P G+T V
Sbjct: 192 MDRWEIDAMYTGSQXVLGAPPGITPV 217
>pdb|3ZRP|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRP|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
Length = 384
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 111 KEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWG 170
KEF + + LR ++ + Y L + GG T+ +V +L PND + + G +G
Sbjct: 31 KEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAMESV-TSLLKPNDKILVVSNGVFG 89
Query: 171 DK 172
D+
Sbjct: 90 DR 91
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 116 IIEKAESDLRALLNIPQEYSVLFLQGGATTQFAA 149
++E+ E LR +NIP VLF Q T FA
Sbjct: 318 VVEEPERCLRGFVNIPGAMKVLFGQPSVTVSFAG 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,260,200
Number of Sequences: 62578
Number of extensions: 494728
Number of successful extensions: 1147
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 16
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)