Query 043611
Match_columns 383
No_of_seqs 197 out of 364
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06027 DUF914: Eukaryotic pr 99.9 1.1E-20 2.3E-25 187.6 26.1 274 61-351 39-313 (334)
2 KOG3912 Predicted integral mem 99.9 5.9E-21 1.3E-25 181.9 20.5 300 38-342 6-333 (372)
3 PF08449 UAA: UAA transporter 99.9 9.5E-20 2.1E-24 178.3 28.9 285 46-346 11-300 (303)
4 TIGR00817 tpt Tpt phosphate/ph 99.8 4.3E-19 9.4E-24 172.9 26.1 261 61-343 27-293 (302)
5 PLN00411 nodulin MtN21 family 99.8 2.3E-18 5.1E-23 172.9 30.6 290 35-343 13-328 (358)
6 KOG2234 Predicted UDP-galactos 99.8 2.8E-18 6E-23 168.8 25.5 299 35-348 15-327 (345)
7 PF04142 Nuc_sug_transp: Nucle 99.8 4.2E-18 9.2E-23 162.6 21.3 222 102-333 13-243 (244)
8 PTZ00343 triose or hexose phos 99.8 1.6E-16 3.5E-21 159.0 31.6 293 33-343 47-348 (350)
9 TIGR00950 2A78 Carboxylate/Ami 99.8 4.5E-16 9.8E-21 147.2 28.4 255 50-338 4-259 (260)
10 PRK11272 putative DMT superfam 99.7 1.5E-14 3.1E-19 140.8 29.7 272 36-342 9-284 (292)
11 PRK11453 O-acetylserine/cystei 99.7 1.4E-14 3E-19 141.4 28.7 270 44-344 13-288 (299)
12 PRK15430 putative chlorampheni 99.7 2.9E-14 6.2E-19 139.1 28.0 269 46-351 19-293 (296)
13 PRK10532 threonine and homoser 99.6 4.7E-13 1E-17 130.4 28.3 252 53-344 30-282 (293)
14 TIGR03340 phn_DUF6 phosphonate 99.6 3.7E-13 7.9E-18 130.2 25.0 215 105-340 62-280 (281)
15 PRK11689 aromatic amino acid e 99.6 2.6E-12 5.6E-17 125.3 27.6 264 47-343 16-287 (295)
16 KOG1443 Predicted integral mem 99.5 1.1E-12 2.3E-17 127.0 18.5 219 109-341 87-313 (349)
17 KOG2765 Predicted membrane pro 99.5 7.7E-13 1.7E-17 131.0 17.0 313 30-352 9-399 (416)
18 COG0697 RhaT Permeases of the 99.5 1.1E-10 2.4E-15 110.5 30.9 210 110-344 74-288 (292)
19 KOG1583 UDP-N-acetylglucosamin 99.5 9.3E-14 2E-18 132.7 9.3 213 120-341 78-312 (330)
20 TIGR00776 RhaT RhaT L-rhamnose 99.4 2.2E-10 4.8E-15 111.9 25.6 222 103-341 56-286 (290)
21 TIGR00688 rarD rarD protein. T 99.3 2.5E-10 5.4E-15 108.6 21.4 162 40-219 7-170 (256)
22 KOG1582 UDP-galactose transpor 99.3 1.8E-10 3.9E-15 110.2 17.6 290 30-345 38-334 (367)
23 PF03151 TPT: Triose-phosphate 99.3 9.1E-11 2E-15 102.5 13.0 147 196-343 1-153 (153)
24 KOG1441 Glucose-6-phosphate/ph 99.2 1.6E-11 3.5E-16 121.2 8.4 289 33-343 14-307 (316)
25 COG2962 RarD Predicted permeas 99.2 5.3E-09 1.1E-13 101.3 23.7 215 101-351 67-291 (293)
26 TIGR00803 nst UDP-galactose tr 98.9 1.3E-08 2.8E-13 95.2 13.5 214 113-340 6-221 (222)
27 KOG1581 UDP-galactose transpor 98.9 5E-08 1.1E-12 94.9 17.7 223 108-343 85-313 (327)
28 KOG1580 UDP-galactose transpor 98.9 2.5E-08 5.5E-13 94.1 12.8 202 124-341 103-311 (337)
29 PF13536 EmrE: Multidrug resis 98.7 2.7E-08 5.8E-13 83.8 6.8 75 107-182 35-110 (113)
30 PF00892 EamA: EamA-like trans 98.7 1.1E-07 2.3E-12 79.0 10.3 119 49-176 5-124 (126)
31 KOG1442 GDP-fucose transporter 98.7 1.4E-08 3E-13 97.6 4.6 227 105-351 105-335 (347)
32 KOG4314 Predicted carbohydrate 98.7 3.4E-07 7.4E-12 84.5 12.9 209 114-343 61-276 (290)
33 KOG4510 Permease of the drug/m 98.6 2E-08 4.3E-13 96.3 4.2 210 106-336 100-318 (346)
34 COG5006 rhtA Threonine/homoser 98.6 8.3E-06 1.8E-10 78.0 21.6 240 54-339 31-278 (292)
35 KOG1444 Nucleotide-sugar trans 98.6 2.5E-06 5.4E-11 83.8 18.2 208 125-349 96-306 (314)
36 PRK15051 4-amino-4-deoxy-L-ara 98.3 6E-06 1.3E-10 69.9 9.7 65 114-178 45-109 (111)
37 PLN00411 nodulin MtN21 family 98.3 2.3E-05 5E-10 79.2 15.5 143 33-181 187-331 (358)
38 KOG2766 Predicted membrane pro 98.2 1E-07 2.2E-12 91.0 -3.2 254 59-341 42-297 (336)
39 TIGR00950 2A78 Carboxylate/Ami 98.2 6.9E-05 1.5E-09 70.8 15.5 129 36-173 129-259 (260)
40 PRK10532 threonine and homoser 98.1 0.00014 2.9E-09 71.0 16.8 132 37-179 150-282 (293)
41 COG2510 Predicted membrane pro 98.1 1.7E-05 3.8E-10 68.6 8.6 128 44-178 12-139 (140)
42 PRK11689 aromatic amino acid e 98.1 0.00011 2.4E-09 71.7 15.1 76 103-178 212-287 (295)
43 PF05653 Mg_trans_NIPA: Magnes 98.1 6.8E-05 1.5E-09 74.1 13.6 76 104-182 51-126 (300)
44 PRK11272 putative DMT superfam 98.0 0.00018 4E-09 70.0 15.0 109 64-179 177-286 (292)
45 TIGR00776 RhaT RhaT L-rhamnose 98.0 0.00014 3E-09 71.2 13.4 132 36-179 153-289 (290)
46 PF06800 Sugar_transport: Suga 97.9 0.0016 3.5E-08 63.4 19.6 114 102-216 41-159 (269)
47 PRK15430 putative chlorampheni 97.8 0.00045 9.9E-09 67.4 14.9 73 107-179 214-286 (296)
48 TIGR03340 phn_DUF6 phosphonate 97.8 5.2E-05 1.1E-09 73.4 7.8 71 105-175 210-280 (281)
49 PF03151 TPT: Triose-phosphate 97.7 0.00075 1.6E-08 58.7 12.3 131 45-175 10-150 (153)
50 TIGR00817 tpt Tpt phosphate/ph 97.6 0.00068 1.5E-08 66.1 11.5 63 116-178 231-293 (302)
51 COG5070 VRG4 Nucleotide-sugar 97.5 0.0029 6.2E-08 60.0 14.0 202 124-342 86-295 (309)
52 PF00892 EamA: EamA-like trans 97.5 0.0008 1.7E-08 55.5 8.9 123 206-343 2-126 (126)
53 COG2510 Predicted membrane pro 97.4 0.0019 4.2E-08 56.1 10.6 127 197-340 5-136 (140)
54 PRK11453 O-acetylserine/cystei 97.4 0.0055 1.2E-07 59.9 15.2 78 102-179 210-288 (299)
55 PRK13499 rhamnose-proton sympo 97.3 0.079 1.7E-06 53.5 21.9 111 101-211 68-190 (345)
56 PRK10452 multidrug efflux syst 97.2 0.0029 6.3E-08 54.5 10.0 70 111-180 35-105 (120)
57 PRK02971 4-amino-4-deoxy-L-ara 97.2 0.0028 6E-08 55.2 9.8 65 115-179 57-123 (129)
58 TIGR00688 rarD rarD protein. T 97.2 0.0086 1.9E-07 56.9 14.1 134 196-342 3-141 (256)
59 PRK10650 multidrug efflux syst 97.2 0.0025 5.4E-08 54.0 9.1 66 111-176 40-106 (109)
60 COG0697 RhaT Permeases of the 97.1 0.02 4.4E-07 53.9 15.4 78 102-179 210-288 (292)
61 COG2076 EmrE Membrane transpor 97.1 0.0036 7.8E-08 52.7 8.8 64 115-178 39-103 (106)
62 PRK11431 multidrug efflux syst 97.0 0.0056 1.2E-07 51.5 9.4 64 114-177 37-101 (105)
63 PRK09541 emrE multidrug efflux 96.9 0.0095 2.1E-07 50.5 9.5 65 115-179 39-104 (110)
64 PTZ00343 triose or hexose phos 96.6 0.043 9.3E-07 55.2 14.0 53 125-177 295-347 (350)
65 PRK13499 rhamnose-proton sympo 96.6 0.039 8.4E-07 55.7 13.0 77 103-180 257-343 (345)
66 KOG2922 Uncharacterized conser 96.5 0.0011 2.4E-08 65.5 1.7 70 114-183 72-141 (335)
67 PF00893 Multi_Drug_Res: Small 96.4 0.013 2.8E-07 47.9 6.9 54 115-168 38-92 (93)
68 PF13536 EmrE: Multidrug resis 96.2 0.059 1.3E-06 45.1 10.4 45 302-346 65-109 (113)
69 PF08449 UAA: UAA transporter 96.2 0.047 1E-06 53.5 10.9 137 36-178 155-297 (303)
70 COG2962 RarD Predicted permeas 96.0 0.14 2.9E-06 50.4 13.1 136 194-343 6-144 (293)
71 PF06800 Sugar_transport: Suga 96.0 0.088 1.9E-06 51.4 11.8 92 63-164 162-253 (269)
72 COG5006 rhtA Threonine/homoser 95.8 0.043 9.3E-07 53.0 8.4 74 101-174 204-278 (292)
73 PF04657 DUF606: Protein of un 95.6 0.34 7.4E-06 42.6 12.9 127 35-174 5-137 (138)
74 TIGR00803 nst UDP-galactose tr 95.4 0.036 7.7E-07 51.7 6.3 60 113-172 159-218 (222)
75 PRK15051 4-amino-4-deoxy-L-ara 93.9 0.19 4.1E-06 42.4 6.5 45 296-340 59-106 (111)
76 PRK09541 emrE multidrug efflux 93.4 0.24 5.2E-06 42.0 6.4 46 296-341 52-101 (110)
77 COG2076 EmrE Membrane transpor 93.3 0.58 1.3E-05 39.5 8.3 47 296-342 52-102 (106)
78 PRK10452 multidrug efflux syst 93.3 0.2 4.4E-06 43.1 5.7 46 296-341 52-101 (120)
79 PF06027 DUF914: Eukaryotic pr 92.9 1.6 3.6E-05 43.9 12.4 142 34-181 167-308 (334)
80 PRK10650 multidrug efflux syst 92.0 0.48 1E-05 40.1 6.3 45 296-340 57-105 (109)
81 PF05653 Mg_trans_NIPA: Magnes 91.8 0.52 1.1E-05 46.7 7.2 38 306-343 85-122 (300)
82 PF06379 RhaT: L-rhamnose-prot 91.7 1.7 3.8E-05 43.8 10.7 145 64-209 32-187 (344)
83 PRK11431 multidrug efflux syst 91.0 0.78 1.7E-05 38.6 6.5 46 296-341 51-100 (105)
84 PF04142 Nuc_sug_transp: Nucle 90.9 5 0.00011 38.5 12.8 128 34-167 113-242 (244)
85 PF10639 UPF0546: Uncharacteri 90.8 0.45 9.7E-06 40.6 4.9 57 119-175 54-111 (113)
86 PF04657 DUF606: Protein of un 90.1 12 0.00027 32.7 14.5 124 196-339 2-137 (138)
87 PRK02971 4-amino-4-deoxy-L-ara 90.0 1.6 3.4E-05 38.0 7.8 33 310-342 87-121 (129)
88 PF06379 RhaT: L-rhamnose-prot 84.8 19 0.0004 36.6 12.7 148 29-180 170-342 (344)
89 KOG2765 Predicted membrane pro 78.8 16 0.00034 37.6 9.7 143 32-181 244-393 (416)
90 PF00893 Multi_Drug_Res: Small 77.9 3.2 7E-05 33.7 3.9 39 296-334 51-93 (93)
91 KOG4510 Permease of the drug/m 70.2 0.62 1.3E-05 45.7 -2.5 50 303-352 128-178 (346)
92 COG4975 GlcU Putative glucose 68.8 3.2 6.9E-05 40.3 2.0 103 66-178 179-285 (288)
93 PF07857 DUF1632: CEO family ( 68.3 13 0.00028 36.1 6.1 19 325-343 116-134 (254)
94 PF11044 TMEMspv1-c74-12: Plec 66.6 11 0.00025 26.8 3.9 12 339-350 22-33 (49)
95 KOG4314 Predicted carbohydrate 65.9 3.5 7.6E-05 38.9 1.6 44 300-343 82-125 (290)
96 COG4975 GlcU Putative glucose 64.8 0.61 1.3E-05 45.1 -3.6 149 59-218 22-175 (288)
97 COG3238 Uncharacterized protei 64.6 1.1E+02 0.0023 27.5 12.4 123 193-337 3-140 (150)
98 KOG1580 UDP-galactose transpor 63.9 8.3 0.00018 37.4 3.7 62 114-175 249-310 (337)
99 COG3238 Uncharacterized protei 61.4 1.2E+02 0.0027 27.2 11.5 127 36-173 10-141 (150)
100 KOG1583 UDP-N-acetylglucosamin 59.4 73 0.0016 31.7 9.3 140 29-178 158-314 (330)
101 KOG2234 Predicted UDP-galactos 59.1 2.1E+02 0.0046 29.1 13.4 130 45-182 189-326 (345)
102 KOG1581 UDP-galactose transpor 53.2 74 0.0016 31.9 8.4 105 67-175 200-310 (327)
103 PRK12405 electron transport co 52.0 2.3E+02 0.0049 27.3 12.5 25 227-251 66-90 (231)
104 KOG1441 Glucose-6-phosphate/ph 49.4 7.8 0.00017 38.8 1.0 64 114-177 243-306 (316)
105 cd02437 CCC1_like_1 CCC1-relat 48.6 59 0.0013 29.4 6.6 54 310-363 18-72 (175)
106 KOG1623 Multitransmembrane pro 47.9 51 0.0011 31.9 6.3 132 111-248 46-181 (243)
107 COG3169 Uncharacterized protei 46.9 61 0.0013 27.3 5.7 34 306-339 78-111 (116)
108 PF04342 DUF486: Protein of un 46.8 29 0.00062 29.4 3.8 32 306-337 71-102 (108)
109 PF04246 RseC_MucC: Positive r 45.3 36 0.00078 29.3 4.5 48 297-344 66-113 (135)
110 PF13038 DUF3899: Domain of un 44.4 21 0.00045 28.7 2.7 21 326-346 5-25 (92)
111 PRK13109 flhB flagellar biosyn 41.0 28 0.00061 35.5 3.6 26 326-351 196-221 (358)
112 PRK12468 flhB flagellar biosyn 40.0 36 0.00077 35.1 4.1 28 324-351 192-219 (386)
113 PRK09108 type III secretion sy 39.3 30 0.00066 35.2 3.5 28 324-351 187-214 (353)
114 PRK12721 secretion system appa 39.2 32 0.00068 35.0 3.6 29 323-351 184-212 (349)
115 PF07226 DUF1422: Protein of u 38.9 2.4E+02 0.0053 24.3 8.2 47 68-115 31-77 (117)
116 PF14184 YrvL: Regulatory prot 38.0 2.6E+02 0.0057 24.4 8.7 38 194-231 5-43 (132)
117 PRK05702 flhB flagellar biosyn 37.7 40 0.00087 34.4 4.1 26 325-350 193-218 (359)
118 PRK13108 prolipoprotein diacyl 37.1 85 0.0018 33.2 6.4 24 323-346 254-277 (460)
119 TIGR01404 FlhB_rel_III type II 36.5 36 0.00079 34.4 3.5 26 325-350 185-210 (342)
120 PRK06298 type III secretion sy 35.2 45 0.00097 34.0 3.9 26 326-351 188-213 (356)
121 COG0341 SecF Preprotein transl 35.0 4.8E+02 0.01 26.1 11.2 76 155-251 129-204 (305)
122 PRK11056 hypothetical protein; 34.5 2.7E+02 0.0059 24.1 7.9 47 68-115 31-77 (120)
123 PRK08156 type III secretion sy 34.4 39 0.00085 34.5 3.4 26 326-351 182-207 (361)
124 PF02447 GntP_permease: GntP f 34.3 3.4E+02 0.0074 28.5 10.4 46 306-351 153-201 (441)
125 PRK12772 bifunctional flagella 33.5 39 0.00085 36.9 3.4 26 326-351 450-475 (609)
126 COG5070 VRG4 Nucleotide-sugar 33.4 1.3E+02 0.0028 29.2 6.3 75 106-180 224-298 (309)
127 PF15099 PIRT: Phosphoinositid 32.6 43 0.00093 29.2 2.8 25 320-344 74-98 (129)
128 PF10864 DUF2663: Protein of u 31.9 63 0.0014 28.3 3.8 46 317-368 53-99 (130)
129 PF14880 COX14: Cytochrome oxi 31.9 71 0.0015 23.9 3.6 16 326-341 19-34 (59)
130 PF08627 CRT-like: CRT-like; 31.8 32 0.00069 30.0 1.9 54 33-86 55-108 (130)
131 PF04971 Lysis_S: Lysis protei 31.5 63 0.0014 25.2 3.3 31 321-351 31-62 (68)
132 PF05297 Herpes_LMP1: Herpesvi 30.8 16 0.00036 36.1 0.0 100 114-222 32-133 (381)
133 PF06609 TRI12: Fungal trichot 30.6 7.5E+02 0.016 27.1 15.7 41 137-177 356-398 (599)
134 COG0786 GltS Na+/glutamate sym 30.5 4.6E+02 0.01 27.3 10.2 43 121-166 298-340 (404)
135 PF10639 UPF0546: Uncharacteri 30.1 74 0.0016 27.2 3.8 38 302-339 73-110 (113)
136 TIGR00328 flhB flagellar biosy 28.7 68 0.0015 32.6 4.0 26 326-351 187-212 (347)
137 KOG1582 UDP-galactose transpor 28.0 3.8E+02 0.0083 26.8 8.7 50 130-179 284-333 (367)
138 PF15061 DUF4538: Domain of un 27.9 73 0.0016 24.1 3.0 17 325-341 7-23 (58)
139 PF12868 DUF3824: Domain of un 27.5 45 0.00098 29.5 2.2 14 328-341 9-22 (137)
140 PF04971 Lysis_S: Lysis protei 27.2 60 0.0013 25.3 2.5 37 321-357 26-65 (68)
141 KOG3626 Organic anion transpor 27.0 3.5E+02 0.0075 30.5 9.3 45 127-171 421-471 (735)
142 PF04342 DUF486: Protein of un 26.8 75 0.0016 27.0 3.2 28 146-174 76-103 (108)
143 cd06174 MFS The Major Facilita 25.5 5.4E+02 0.012 23.8 17.9 25 38-62 127-151 (352)
144 PHA03049 IMV membrane protein; 25.3 52 0.0011 25.5 1.8 20 326-345 5-25 (68)
145 PRK01844 hypothetical protein; 25.1 90 0.002 24.6 3.2 28 33-60 4-31 (72)
146 PRK09804 putative cryptic C4-d 24.5 8.7E+02 0.019 25.8 13.7 23 330-352 202-224 (455)
147 PF05961 Chordopox_A13L: Chord 24.4 49 0.0011 25.7 1.6 20 326-345 5-25 (68)
148 COG4711 Predicted membrane pro 24.3 5.1E+02 0.011 24.6 8.5 72 151-222 114-188 (217)
149 PRK15086 ethanolamine utilizat 24.2 99 0.0021 31.7 4.1 17 326-344 340-356 (372)
150 PF10754 DUF2569: Protein of u 23.6 3E+02 0.0066 24.1 6.8 77 142-220 66-146 (149)
151 PRK02935 hypothetical protein; 23.5 49 0.0011 28.0 1.6 56 155-210 6-61 (110)
152 PF11023 DUF2614: Protein of u 23.2 77 0.0017 27.1 2.7 59 155-213 5-63 (114)
153 PRK02237 hypothetical protein; 22.6 1.6E+02 0.0035 25.0 4.5 38 144-181 71-108 (109)
154 PF10710 DUF2512: Protein of u 22.2 4.2E+02 0.0091 23.3 7.3 59 295-353 56-115 (136)
155 KOG1289 Amino acid transporter 22.1 1E+03 0.023 25.8 12.6 55 101-158 284-340 (550)
156 PF02487 CLN3: CLN3 protein; 22.0 3.3E+02 0.0071 28.3 7.5 32 148-179 78-109 (402)
157 PRK12773 flhB flagellar biosyn 21.7 87 0.0019 34.3 3.4 26 326-351 485-510 (646)
158 PRK10734 putative calcium/sodi 20.8 1.4E+02 0.0031 29.8 4.6 19 317-335 118-136 (325)
159 KOG2922 Uncharacterized conser 20.6 37 0.00081 34.2 0.4 118 190-342 16-135 (335)
No 1
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.88 E-value=1.1e-20 Score=187.61 Aligned_cols=274 Identities=15% Similarity=0.173 Sum_probs=188.0
Q ss_pred CCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHh
Q 043611 61 KGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLS 140 (383)
Q Consensus 61 gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~s 140 (383)
|-+.|..|++..-.--.+...|..+. |+..+ +.....++.+.-|+.++++=-..|++...|++|++++..+++.+
T Consensus 39 ~~~~P~~Qs~~~Y~~l~~vy~~~~~~----r~~~~-~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~ 113 (334)
T PF06027_consen 39 GVNIPTFQSFFNYVLLALVYTPILLY----RRGFK-KWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDC 113 (334)
T ss_pred CccCcHHHHHHHHHHHHHHHhhhhhh----ccccc-cchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhh
Confidence 55779999987765444433333322 11111 11112234456677777777778899999999999999999999
Q ss_pred hhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043611 141 SQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKK 220 (383)
Q Consensus 141 sql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk 220 (383)
+..+|++++|++++|+|+++.|+.|+++...|.+++...|....+++.+..+...|++++++||++||++-++.|+..|+
T Consensus 114 ~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~ 193 (334)
T PF06027_consen 114 TSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKK 193 (334)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999888887764322223344557899999999999999999999999888
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHHHHhhhcccee-ecccch
Q 043611 221 VYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVF-LTSSLT 299 (383)
Q Consensus 221 ~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~vGlv~-~~Ssl~ 299 (383)
. ...|+..++++++.+++.+-+.+- |++++ ++ ++-. +.-...+++-++..-+.+. .+.+.. .+|+..
T Consensus 194 ~----~~~~~lg~~Glfg~ii~~iq~~il-e~~~i----~~-~~w~-~~~~~~~v~~~~~lf~~y~-l~p~~l~~ssAt~ 261 (334)
T PF06027_consen 194 A----PRVEFLGMLGLFGFIISGIQLAIL-ERSGI----ES-IHWT-SQVIGLLVGYALCLFLFYS-LVPIVLRMSSATF 261 (334)
T ss_pred C----CHHHHHHHHHHHHHHHHHHHHHhe-ehhhh----hc-cCCC-hhhHHHHHHHHHHHHHHHH-HHHHHHHhCccce
Confidence 7 367899999999998887554332 22222 22 2111 1001111111111111110 111222 345555
Q ss_pred hhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 300 GGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 300 asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
.|+-.....|.+.+..+++||+++++..++|.++++.|+..|...+.+++++
T Consensus 262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 5554444566788999999999999999999999999999998876555443
No 2
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.87 E-value=5.9e-21 Score=181.86 Aligned_cols=300 Identities=13% Similarity=0.098 Sum_probs=230.3
Q ss_pred HHHHHHHHhhhhhHhhhhHhhcC-----C-CcchhHHHHHHHhhhhhhhhhhhccccccccCC--C-----CC--CCCcc
Q 043611 38 TNYLCLFVGSVSASLLSKYYFNH-----K-GSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTE--R-----RP--FSHFT 102 (383)
Q Consensus 38 ~~~~~l~~g~~~~~Ll~r~y~~~-----g-g~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~--~-----~~--~~~~~ 102 (383)
+..+.|++.++.++++.|...+. + =+||.+|++.|+-|+-+|+..+++.+...+++. . .+ .++++
T Consensus 6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~ 85 (372)
T KOG3912|consen 6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN 85 (372)
T ss_pred hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence 34456777889999999988776 3 289999999999999999865555431111110 1 11 22678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCC
Q 043611 103 TKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGH 182 (383)
Q Consensus 103 ~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~ 182 (383)
|++++.+++|++. +..++| .|++++.+|.+++++.+-.+|+.+||.-+++++++.+||.|+....+|.++++..+-.
T Consensus 86 p~lfl~Pal~Di~--gsslm~-vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~ 162 (372)
T KOG3912|consen 86 PVLFLPPALCDIA--GSSLMY-VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH 162 (372)
T ss_pred cceecChHHHHHh--hhHHHH-HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecc
Confidence 8889999999988 777888 9999999999999999999999999999999999999999999999998888866432
Q ss_pred CCCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH-HH----HHhcC-CCCcc
Q 043611 183 DKSPDLPK-SKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALAT-VG----MASDG-GYPEM 255 (383)
Q Consensus 183 ~~~~~~s~-~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~-vg----l~~~g-~~~~i 255 (383)
.+.+..++ +.-..|.++++.|.+..|.+.+++|+..+|.. ..++|...|.++++..++. .+ .+..+ .|+.=
T Consensus 163 ~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n--V~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~ 240 (372)
T KOG3912|consen 163 LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN--VAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCN 240 (372)
T ss_pred cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc--CCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCC
Confidence 22112222 23567999999999999999999999999986 7899999999998854444 33 22233 22211
Q ss_pred chh-Hhh---hhc--CCcchhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHH
Q 043611 256 KRE-AQT---VYD--KGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAV 329 (383)
Q Consensus 256 ~~e-~~~---~F~--~g~~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kii 329 (383)
|+. .++ +|. ++....++++..+.++...++...+.+..+.|+-++.+...++.-+.|+++....||.+...|+.
T Consensus 241 ~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqil 320 (372)
T KOG3912|consen 241 PRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQIL 320 (372)
T ss_pred CCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 111 111 122 33355666777777776667766666677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 043611 330 STVLCAWGFCSYV 342 (383)
Q Consensus 330 g~~L~l~G~~~yi 342 (383)
|.++.+.|...|.
T Consensus 321 GFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 321 GFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888873
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.87 E-value=9.5e-20 Score=178.26 Aligned_cols=285 Identities=19% Similarity=0.192 Sum_probs=202.9
Q ss_pred hhhhhHhh-hhHhhcCCCc-chhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 043611 46 GSVSASLL-SKYYFNHKGS-SRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLF 123 (383)
Q Consensus 46 g~~~~~Ll-~r~y~~~gg~-~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly 123 (383)
+.+...++ .|..-.+.++ .+|.-+++|..--.+.-.+..... .+++.++.| +.-++..+++..+.+.+-
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 81 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLF-KFPKSRKIP--------LKKYAILSFLFFLASVLS 81 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhc-cccCCCcCh--------HHHHHHHHHHHHHHHHHH
Confidence 33344333 3444444444 699999999997776654333331 101111111 223344566666666777
Q ss_pred HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCC-CCCCCcchhHHHHHHHH
Q 043611 124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKS-PDLPKSKYFIGFFCTVG 202 (383)
Q Consensus 124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~-~~~s~~~~~iG~~l~L~ 202 (383)
+.+++|+|.+++.+++++.++++++++++++|+|++++++.++++.++|+++...++..+++ ++........|+++.+.
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~ 161 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLL 161 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999998887754432 22222223459999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHh--cCCCCccchhHhhhhcCCcchhhhHHHHHHHH
Q 043611 203 AGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMAS--DGGYPEMKREAQTVYDKGPVVYCLTIIGNVVT 280 (383)
Q Consensus 203 Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~--~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~ 280 (383)
+.++.|++....|+.++++. ....|+..+..+++.+++.+.++. .+++.+ ..+ |-...+.....+....+.
T Consensus 162 sl~~~a~~~~~qe~~~~~~~--~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~----~~~-f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 162 SLLLDAFTGVYQEKLFKKYG--KSPWELMFYTNLFSLPFLLILLFLLPTGEFRS----AIR-FISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH----HHH-HHHHhHHHHHHHHHHHHH
Confidence 99999999999999999986 556999999999999888877776 666432 122 211111111112222222
Q ss_pred HHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcc
Q 043611 281 WQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMY 346 (383)
Q Consensus 281 wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~ 346 (383)
-.++..++..++...|+++.+++.++|.+++.++++++||+++++.+++|.++++.|...|.|.++
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~ 300 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK 300 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence 222222333334456999999999999999999999999999999999999999999999888543
No 4
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.85 E-value=4.3e-19 Score=172.86 Aligned_cols=261 Identities=12% Similarity=0.103 Sum_probs=173.8
Q ss_pred CCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHH
Q 043611 61 KGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLL 139 (383)
Q Consensus 61 gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ 139 (383)
+-+-|+.-++.|.. +..++.+ .... . ..+++ +.+++.+...+..|++.+.++.+.++|++|+++|.++++.
T Consensus 27 ~~~~P~~~~~~~~~~~~~~~~~-~~~~---~-~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~ 98 (302)
T TIGR00817 27 VFPYPYFKTLISLAVGSLYCLL-SWSS---G-LPKRL---KISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK 98 (302)
T ss_pred hCChhHHHHHHHHHHHHHHHHH-HHHh---C-CCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34678999999887 4444332 2111 0 01111 1345667777788888888889999999999999999999
Q ss_pred hhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043611 140 SSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYK 219 (383)
Q Consensus 140 ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~k 219 (383)
+++|+|+++++++++|||++++++.++++..+|+++.+.+ +. +....|+++.++|++.+++|..+.|+..+
T Consensus 99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~-~~--------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~ 169 (302)
T TIGR00817 99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT-EL--------SFNWAGFLSAMISNITFVSRNIFSKKAMT 169 (302)
T ss_pred hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC-cc--------cccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998765321 11 12467999999999999999999888777
Q ss_pred --hhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcC-Cc--chhhhHHHHHHHHHHHHHhhhccceee
Q 043611 220 --KVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDK-GP--VVYCLTIIGNVVTWQLCFMGTAGMVFL 294 (383)
Q Consensus 220 --k~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~-g~--~~y~l~l~~~av~wq~~~vg~vGlv~~ 294 (383)
++ +.+++..|....+.+++....+..++....+.+... ... .. ..+...+.........++.-..-..-.
T Consensus 170 ~~~~----~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (302)
T TIGR00817 170 IKSL----DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQ-AISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGR 244 (302)
T ss_pred cCCC----CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHH-hhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44 456666777777666666433333322222222211 100 00 011111111111111111000011335
Q ss_pred cccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 295 TSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 295 ~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
+|+...++...+.+.++.+++++++||+++..+++|.++++.|+..|.+
T Consensus 245 ~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 245 VSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred CCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 6777888886666666789999999999999999999999987766544
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.84 E-value=2.3e-18 Score=172.86 Aligned_cols=290 Identities=14% Similarity=0.175 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHH
Q 043611 35 LLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVG 113 (383)
Q Consensus 35 ~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 113 (383)
...+.++.+=+++.+-.++.|.-++.|=+. ..-...-+. +..+++ |+.+. ++++++.+ +.++|.+...++.|
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~-~~~~~~R~~iA~l~Ll-~~~~~---~~~~~~~~--~~~~~~~~~l~l~g 85 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNI-YPFLGYSYLLASLLLL-PSLFF---TNRSRSLP--PLSVSILSKIGLLG 85 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHHHH-HHHHH---HHHhcccC--cchHHHHHHHHHHH
Confidence 334444445556777778888888666444 434444443 444443 44332 12211111 12334455555566
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHH------hccccchhHHHHHHHHHHHHHHhcccCCCC----
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVII------VKQKITFSNLNCVILLTLSSVLLALGSGHD---- 183 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~i------lkeK~t~~~i~svvLltiG~vll~~~~~~~---- 183 (383)
++-...+.++..|++|+|++.++++.+++|+|++++++++ +|||++++++.|+++.++|+.++..+++..
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~ 165 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA 165 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 6544555678899999999999999999999999999999 699999999999999999988876533210
Q ss_pred -----------C-CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH-HHHHhcC
Q 043611 184 -----------K-SPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALAT-VGMASDG 250 (383)
Q Consensus 184 -----------~-~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~-vgl~~~g 250 (383)
+ +.+...++..+|+++.++|+++|++|..+.++..+|+. .......|.++++..++. .++..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP---AAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0 01111223467999999999999999999998888873 333444555555554444 4454443
Q ss_pred C-CCccchhHhhhhcCCc-chhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhH
Q 043611 251 G-YPEMKREAQTVYDKGP-VVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKA 328 (383)
Q Consensus 251 ~-~~~i~~e~~~~F~~g~-~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~ki 328 (383)
+ .+. . ... +.... ...++.++ +.+.+.+.+-++ -..+...+++...+.+.++.+++++++||++++.++
T Consensus 243 ~~~~~--~-~~~-~~~~~~~i~y~~i~-t~lay~lw~~~v----~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~ 313 (358)
T PLN00411 243 NNPSV--W-IIH-FDITLITIVTMAII-TSVYYVIHSWTV----RHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCL 313 (358)
T ss_pred CCccc--c-eec-cchHHHHHHHHHHH-HHHHHHHHHHHH----hccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2 111 0 000 00000 00111111 111221111111 112333334444444444799999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 043611 329 VSTVLCAWGFCSYVY 343 (383)
Q Consensus 329 ig~~L~l~G~~~yiy 343 (383)
+|.++++.|+.....
T Consensus 314 iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 314 IGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988777554
No 6
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.8e-18 Score=168.82 Aligned_cols=299 Identities=15% Similarity=0.162 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhh--hhhhhhhhhccccccc----cCCCCCCC---CcchHH
Q 043611 35 LLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAG--FPLLLPPIFLPYYLFK----CTERRPFS---HFTTKV 105 (383)
Q Consensus 35 ~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g--~plll~~~~~~~~~~~----~~~~~~~~---~~~~~~ 105 (383)
+-.+..+.+.+..++=+++.|+=-..+ +-++..|-+-+.. .++.+ .++.. +... ++..+..+ .-.|+.
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~-~~~f~~tt~v~~~Ei~Kl~~-c~~~~-~~~~~~~~~~~~~~l~~~i~~~~~~ 91 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTRE-KPMFLPTTAVFLTEVIKLVF-CLFLL-LFEERKYAKKSLKSLSKEILAAPRE 91 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCC-CCCcchhHHHHHHHHHHHHH-HHHHH-HHHhhHHhhhhhhhcCHHHHhChHH
Confidence 334444556666677777777665556 5556666555543 33332 22222 1111 11111111 233456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCC-
Q 043611 106 LTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDK- 184 (383)
Q Consensus 106 ~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~- 184 (383)
.+-..++.++|+.||.++..++.|+|++||++..|.+...||+|++++++||++++||.+++++++|++++.++..+..
T Consensus 92 ~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~ 171 (345)
T KOG2234|consen 92 TLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG 171 (345)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 6777788999999998888999999999999999999999999999999999999999999999999999985543322
Q ss_pred CC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhh
Q 043611 185 SP-DLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVY 263 (383)
Q Consensus 185 ~~-~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F 263 (383)
+. ..+..+.++|+..+++++.++|+..++.|++.|.-....++.++|.+. ++.++..++.... |+..+. ..+ |
T Consensus 172 a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~--~g~~f~~l~~~~~-d~~~i~--~~g-f 245 (345)
T KOG2234|consen 172 AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYF--FGILFNLLTILLQ-DGEAIN--EYG-F 245 (345)
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHHHHHHHHHhhc-cccccc--cCC-c
Confidence 22 455667899999999999999999999999888765446777777766 6677777776544 444443 344 4
Q ss_pred cCCcchhhhHHHHHHHHHHHHHhh--hccc-eeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611 264 DKGPVVYCLTIIGNVVTWQLCFMG--TAGM-VFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS 340 (383)
Q Consensus 264 ~~g~~~y~l~l~~~av~wq~~~vg--~vGl-v~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~ 340 (383)
.+|... .+|..+.++. +| .+++ ..+.....++.+.++...++.++++.+||-+++..-.+|..+++.....
T Consensus 246 f~G~s~----~vw~vVl~~a--~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~l 319 (345)
T KOG2234|consen 246 FYGYSS----IVWLVVLLNA--VGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFL 319 (345)
T ss_pred cccccH----HHHHHHHHHh--ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Confidence 455332 2222222222 22 2222 3356777777888888888889999999999999999999999954444
Q ss_pred HHhhcchh
Q 043611 341 YVYGMYVK 348 (383)
Q Consensus 341 yiy~~~~~ 348 (383)
|.+.+++|
T Consensus 320 Y~~~P~~~ 327 (345)
T KOG2234|consen 320 YSLYPARD 327 (345)
T ss_pred hhcCCccc
Confidence 44334444
No 7
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.80 E-value=4.2e-18 Score=162.65 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=166.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCC
Q 043611 102 TTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG 181 (383)
Q Consensus 102 ~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~ 181 (383)
.+|..+.+++++++++.+|.+...+++|+|+++++++.|+++++||+|+++++|+|++++||.|++++++|.+++..++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 45788899999999999998888999999999999999999999999999999999999999999999999999987764
Q ss_pred CCC--C-CC-----CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 043611 182 HDK--S-PD-----LPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYP 253 (383)
Q Consensus 182 ~~~--~-~~-----~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~ 253 (383)
.++ + ++ ....+...|+++++.++.++|+..+..|+..|+-....+..++|. ++++.++..+..... |+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL--~~~gi~~~~~~~~~~-~~~ 169 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQL--YLFGILFNLLALLLS-DGS 169 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHHHHHhcc-ccc
Confidence 331 1 11 123457899999999999999999999999999753344555554 446666666655443 333
Q ss_pred ccchhHhhhhcCCcchhhhHHHHHHHHHHH-HHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHH
Q 043611 254 EMKREAQTVYDKGPVVYCLTIIGNVVTWQL-CFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTV 332 (383)
Q Consensus 254 ~i~~e~~~~F~~g~~~y~l~l~~~av~wq~-~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~ 332 (383)
++.+ +. |.+|... .+|..+..+. ..+-+.-+..+.+++.+++...+...++.++++++||.+++..-++|..
T Consensus 170 ~~~~--~g-~f~G~~~----~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 170 AISE--SG-FFHGYSW----WVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred cccc--CC-chhhcch----HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 3222 22 3333221 2333222222 2222222355788899999999999999999999999999999988876
Q ss_pred H
Q 043611 333 L 333 (383)
Q Consensus 333 L 333 (383)
+
T Consensus 243 ~ 243 (244)
T PF04142_consen 243 L 243 (244)
T ss_pred c
Confidence 5
No 8
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.80 E-value=1.6e-16 Score=158.96 Aligned_cols=293 Identities=12% Similarity=0.069 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHH
Q 043611 33 LVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSIL 111 (383)
Q Consensus 33 ~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (383)
.+.+.+.|++-........+..|.=.+. -..||.-++.|.. ++-++. .+.... .+++ + +... .++.+.-.+.
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~-~~~~~~-~~~~--~-~~~~-~~~~~~~llp 119 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFAL-LYWATG-FRKI--P-RIKS-LKLFLKNFLP 119 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHH-HHHHhC-CCCC--C-CCCC-HHHHHHHHHH
Confidence 3666667777666666666666655544 2459999999988 655443 222221 1111 1 1110 1122333334
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCc
Q 043611 112 VGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKS 191 (383)
Q Consensus 112 ~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~ 191 (383)
+|++....+.....|+++.++|.++++.++.|+|+++++++++|||++++++.++++.++|+.+...++. .
T Consensus 120 ~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---------~ 190 (350)
T PTZ00343 120 QGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---------H 190 (350)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---------h
Confidence 4444333344445999999999999999999999999999999999999999999999999877664321 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHH-HHHHhcCCCCccchhHhh---hhc
Q 043611 192 KYFIGFFCTVGAGLLFALYLPVMEMIYKKVYC---YSMVMEMQLVMEIAATALAT-VGMASDGGYPEMKREAQT---VYD 264 (383)
Q Consensus 192 ~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~---~~~vlemq~~~~l~a~~~~~-vgl~~~g~~~~i~~e~~~---~F~ 264 (383)
....|+++.++|++.+++|..+.|+..++... .....++..+..+++.+++. +..+.++. .......+ .+.
T Consensus 191 ~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~--~~~~~~~~~~~~~~ 268 (350)
T PTZ00343 191 FTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGK--KWVPVWTNYTANMT 268 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHhhhccc
Confidence 14779999999999999999999998877520 12344555555666665555 33333332 11111111 011
Q ss_pred CCcchhhh-HHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 265 KGPVVYCL-TIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 265 ~g~~~y~l-~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
...+...+ .++.+.+.+.+++....-.+-.+|.+..++...+++.++.+++++++||+++..+++|.++++.|...|-+
T Consensus 269 ~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 269 NYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 11110011 12223333333333222223456788889999988888999999999999999999999999988877643
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.77 E-value=4.5e-16 Score=147.22 Aligned_cols=255 Identities=20% Similarity=0.229 Sum_probs=165.4
Q ss_pred hHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHH-HHHHHHHHHHHHhhc
Q 043611 50 ASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVG-LLLGLNNLLFSWGNS 128 (383)
Q Consensus 50 ~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-ll~a~~~~Ly~~gl~ 128 (383)
..+..|.-.+++ -.+|..++.....-++++.+++.. + ++ ++.+......| +..+.++.+|..|++
T Consensus 4 ~~~~~k~~~~~~-~~~~~~~~~r~~~~~l~l~~~~~~----~----~~-----~~~~~~~~~~~~~~~~l~~~~~~~a~~ 69 (260)
T TIGR00950 4 TGVVIGQYLEGQ-VPLYFAVFRRLIFALLLLLPLLRR----R----PP-----LKRLLRLLLLGALQIGVFYVLYFVAVK 69 (260)
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHh----c----cC-----HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655553 455666666666333343343322 1 11 11122233333 445678888889999
Q ss_pred CCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 043611 129 YLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFA 208 (383)
Q Consensus 129 ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~g 208 (383)
|+|++..+++.+++|+|+++++.+++|||++++++.++++..+|+.++..++.. +.+..|+++.+.|+++|+
T Consensus 70 ~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~--------~~~~~G~~~~l~a~~~~a 141 (260)
T TIGR00950 70 RLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL--------SINPAGLLLGLGSGISFA 141 (260)
T ss_pred hcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc--------cccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887643211 125689999999999999
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHHHHhhh
Q 043611 209 LYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGT 288 (383)
Q Consensus 209 l~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~ 288 (383)
.+..+.++..++.. .....+..+..+++.+++..-....++... .+... + ....++.++.+.+.+.+++.+.
T Consensus 142 ~~~~~~k~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-~---~~~~~~~~~~~~~~~~~~~~a~ 213 (260)
T TIGR00950 142 LGTVLYKRLVKKEG--PELLQFTGWVLLLGALLLLPFAWFLGPNPQ--ALSLQ-W---GALLYLGLIGTALAYFLWNKGL 213 (260)
T ss_pred HHHHHHhHHhhcCC--chHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cchHH-H---HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887763 122333334555666555533333332111 11111 0 0011122333333333332222
Q ss_pred ccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHH
Q 043611 289 AGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGF 338 (383)
Q Consensus 289 vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~ 338 (383)
-+.+.-.++++..+.++++.+++++++||+++..+++|.++++.|.
T Consensus 214 ----~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 214 ----TLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred ----hcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 2234455566666777778999999999999999999999999775
No 10
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.71 E-value=1.5e-14 Score=140.80 Aligned_cols=272 Identities=15% Similarity=0.112 Sum_probs=166.5
Q ss_pred HHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHH
Q 043611 36 LVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGL 114 (383)
Q Consensus 36 ~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl 114 (383)
+++..+.+.+--+.+.+..|.-.+ +-+++.-+..... +..+++ +++.. ++++ . + ++|.+.....+|+
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll-~~~~~---~~~~-~-~----~~~~~~~~~~~g~ 76 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLL-AFLLL---RGHP-L-P----TLRQWLNAALIGL 76 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHH-HHHHH---hCCC-C-C----cHHHHHHHHHHHH
Confidence 334444455566678888886554 3566666666666 444433 44322 1111 1 1 2344555566776
Q ss_pred HH-HHHHHHHHHhh-cCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 043611 115 LL-GLNNLLFSWGN-SYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSK 192 (383)
Q Consensus 115 l~-a~~~~Ly~~gl-~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~ 192 (383)
+. +..+.++.++. +++|++..+++.+++|+|+++++.+ +|||++++++.++++..+|+.++..++.. +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~--------~~ 147 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL--------SG 147 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc--------cc
Confidence 54 34556777898 9999999999999999999999986 69999999999999999998777543211 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH-HHHHhcCCCCccchhHhhhhcCCcchhh
Q 043611 193 YFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALAT-VGMASDGGYPEMKREAQTVYDKGPVVYC 271 (383)
Q Consensus 193 ~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~-vgl~~~g~~~~i~~e~~~~F~~g~~~y~ 271 (383)
...|.++.++|+++|++|....++..++. ......+...++..++. .+...++++...+ +.+. + ....+
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~i~~ 217 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPLPV-----GMMAGAAEMLAAGVVLLIASLLSGERLTALP-TLSG-F---LALGY 217 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHHHHHHHHHHcCCcccccC-CHHH-H---HHHHH
Confidence 35799999999999999988777654332 12222333333333333 3332222211100 0111 0 01122
Q ss_pred hHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611 272 LTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV 342 (383)
Q Consensus 272 l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi 342 (383)
+.+..+++.+.++..+. .+.+.-.+++...+.++.+.+++++++||+++..+++|.++++.|.....
T Consensus 218 l~i~~s~~~~~l~~~~~----~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 218 LAVFGSIIAISAYMYLL----RNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 23333444443333322 12233334444555555579999999999999999999999997776643
No 11
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.71 E-value=1.4e-14 Score=141.40 Aligned_cols=270 Identities=14% Similarity=0.149 Sum_probs=161.7
Q ss_pred HHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHH-HHHH
Q 043611 44 FVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLG-LNNL 121 (383)
Q Consensus 44 ~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a-~~~~ 121 (383)
.+.-+.+.+..|.-.++ -+++.-+...+. +..+++ ++. . +++ .+ ++.+. ..|+... .+..
T Consensus 13 ~~~Wg~~~~~~k~~~~~--~~p~~~~~~R~~~a~~~l~-~~~-~----~~~--~~-----~~~~~---~~g~~~~~~~~~ 74 (299)
T PRK11453 13 VVVWGLNFVVIKVGLHN--MPPLMLAGLRFMLVAFPAI-FFV-A----RPK--VP-----LNLLL---GYGLTISFGQFA 74 (299)
T ss_pred HHHHhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH-HHh-c----CCC--Cc-----hHHHH---HHHHHHHHHHHH
Confidence 33445666777866543 456555555544 332222 221 1 111 11 12222 2344322 3445
Q ss_pred HHHHhhcC-CChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHH
Q 043611 122 LFSWGNSY-LPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCT 200 (383)
Q Consensus 122 Ly~~gl~y-lp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~ 200 (383)
++..+++| +|++..+++.+++|+++.+++++++|||++++++.++++.++|+.++..++..+ ......|+++.
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~------~~~~~~G~~l~ 148 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG------QHVAMLGFMLT 148 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC------cchhHHHHHHH
Confidence 56688888 799999999999999999999999999999999999999999988776332111 11135799999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH-HHHHhcCCCCccchhHhhhhcCCcc--hhhhHHHHH
Q 043611 201 VGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALAT-VGMASDGGYPEMKREAQTVYDKGPV--VYCLTIIGN 277 (383)
Q Consensus 201 L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~-vgl~~~g~~~~i~~e~~~~F~~g~~--~y~l~l~~~ 277 (383)
+.|++.|++|..+.++..++. .....+.++.+..+++..+.. .+...+++. ....+... .....+ ..++.++.+
T Consensus 149 l~aal~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~l~~l~i~~t 225 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMSHS-TRPAVMSLVVWSALIPIIPFFVASLILDGSA-TMIHSLVT-IDMTTILSLMYLAFVAT 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHhccc-CccchhHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhhcc-CCHHHHHHHHHHHHHHH
Confidence 999999999999999876654 223344555666666554444 333333331 11000000 000001 112223334
Q ss_pred HHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhh
Q 043611 278 VVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG 344 (383)
Q Consensus 278 av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~ 344 (383)
++.+.++..+.- ..+...++.+..+.+.++.+++++++||+++..+++|.++++.|.....++
T Consensus 226 ~~~~~l~~~~l~----~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 226 IVGYGIWGTLLG----RYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 444443332220 012223344444444446999999999999999999999999888765553
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.69 E-value=2.9e-14 Score=139.08 Aligned_cols=269 Identities=14% Similarity=0.085 Sum_probs=158.4
Q ss_pred hhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 043611 46 GSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTER-RPFSHFTTKVLTLSILVGLLLGLNNLLF 123 (383)
Q Consensus 46 g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gll~a~~~~Ly 123 (383)
..+...+..|.- . +-+++.-...+.. |.++++ ++... +++..+ +.. ..+++.+......++..+.++.+|
T Consensus 19 ~wg~~~~~~k~~--~-~~~~~~~~~~R~~~a~~~l~-~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 90 (296)
T PRK15430 19 IWGIAPAYFKLI--Y-YVPADEILTHRVIWSFFFMV-VLMSI---CRQWSYLKTL-IQTPQKIFMLAVSAVLIGGNWLLF 90 (296)
T ss_pred HHHHHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHH-HHHHH---HccHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666753 2 2445555556555 776655 33322 111100 000 012344444444556677888999
Q ss_pred HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHH
Q 043611 124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGA 203 (383)
Q Consensus 124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~A 203 (383)
.+|++++|++..+++..+.|+|+++++++++|||++++++.++++..+|++++..+ +++ . .++.++|
T Consensus 91 ~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~-~~~---------~---~~~~l~a 157 (296)
T PRK15430 91 IWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT-FGS---------L---PIIALGL 157 (296)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-cCC---------c---cHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877532 211 1 1457778
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcc---hhhh-HHHHHHH
Q 043611 204 GLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPV---VYCL-TIIGNVV 279 (383)
Q Consensus 204 a~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~---~y~l-~l~~~av 279 (383)
+++|++|..+.|+..++. . ........|...++... .... ...+... +....+ .+.+ ..+.+.+
T Consensus 158 a~~~a~~~i~~r~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~--------~~~~~~~~~~~~~~~g~~t~i 225 (296)
T PRK15430 158 AFSFAFYGLVRKKIAVEA-Q-TGMLIETMWLLPVAAIY-LFAI-ADSSTSH--------MGQNPMSLNLLLIAAGIVTTV 225 (296)
T ss_pred HHHHHHHHHHHHhcCCCC-c-hhHHHHHHHHHHHHHHH-HHHH-ccCCccc--------ccCCcHHHHHHHHHHHHHHHH
Confidence 999999987776653321 1 11222222332222221 1111 1111100 101111 0011 1111222
Q ss_pred HHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 280 TWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 280 ~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
.+.++..+. -+.++-..+....+.+++..+++++++||+++..+++|+++++.|++..+.+.-...||
T Consensus 226 ~~~~~~~a~----~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~~~~ 293 (296)
T PRK15430 226 PLLCFTAAA----TRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQRR 293 (296)
T ss_pred HHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222222111 11233334444556666679999999999999999999999999999998865544333
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.62 E-value=4.7e-13 Score=130.39 Aligned_cols=252 Identities=19% Similarity=0.163 Sum_probs=154.2
Q ss_pred hhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 043611 53 LSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLP 131 (383)
Q Consensus 53 l~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp 131 (383)
..|+-+++ -.++.-....+. +.++++ +++. +++.+ .++|.+......|+..+..+.++.++++|+|
T Consensus 30 ~~K~~~~~--~~~~~~~~~R~~~a~l~l~-~~~~-----~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~ 96 (293)
T PRK10532 30 LAKSLFPL--VGAPGVTALRLALGTLILI-AIFK-----PWRLR-----FAKEQRLPLLFYGVSLGGMNYLFYLSIQTVP 96 (293)
T ss_pred HHHHHHHH--cCHHHHHHHHHHHHHHHHH-HHHh-----HHhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57766654 456666666665 555544 3321 11111 1234444455677777888888889999999
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 043611 132 VSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYL 211 (383)
Q Consensus 132 ~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~ 211 (383)
++..+++..++|+|+++++. ||.++.++ +.+..+|+.++.. ++.+. +.....|.++.++|+++|+.|.
T Consensus 97 ~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~-~~~~~-----~~~~~~G~ll~l~aa~~~a~~~ 164 (293)
T PRK10532 97 LGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLP-LGQDV-----SHVDLTGAALALGAGACWAIYI 164 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeee-cCCCc-----ccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999998873 66555544 5556777666542 21111 1124679999999999999999
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHHHHhhhccc
Q 043611 212 PVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGM 291 (383)
Q Consensus 212 ~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~vGl 291 (383)
.+.++..++.. ...+ .+..+++..++.......++ ....+... + ....++.++.+.+.|.+++.+.
T Consensus 165 v~~r~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~---~~~l~lgv~~t~~~~~l~~~~~--- 230 (293)
T PRK10532 165 LSGQRAGAEHG----PATV-AIGSLIAALIFVPIGALQAG--EALWHWSI-L---PLGLAVAILSTALPYSLEMIAL--- 230 (293)
T ss_pred HHHHHHhccCC----chHH-HHHHHHHHHHHHHHHHHccC--cccCCHHH-H---HHHHHHHHHHHHHHHHHHHHHH---
Confidence 99998877763 1122 23334444444422222221 10010111 0 0112334555555554444332
Q ss_pred eeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhh
Q 043611 292 VFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG 344 (383)
Q Consensus 292 v~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~ 344 (383)
-+.++..++.+..+.++.+.+++++++||+++..+++|.++++.|...+...
T Consensus 231 -~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 231 -TRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred -HhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 1224444555555656667999999999999999999999999888777543
No 14
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.60 E-value=3.7e-13 Score=130.18 Aligned_cols=215 Identities=11% Similarity=0.032 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCC
Q 043611 105 VLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDK 184 (383)
Q Consensus 105 ~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~ 184 (383)
.+......|+..+..+.++..|+++.|++..+.+..++|+++++++++++|||++++++.|+++...|+.++..++.. +
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-~ 140 (281)
T TIGR03340 62 FWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-Q 140 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc-c
Confidence 333444556666677788889999999999999999999999999999999999999999999999998877643211 1
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhc
Q 043611 185 SPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYD 264 (383)
Q Consensus 185 ~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~ 264 (383)
....|+.+.+.++++|++|..+.++..++............+..+....++..-....++. .. .+ ..
T Consensus 141 -------~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~--- 207 (281)
T TIGR03340 141 -------HRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SM-FP-YA--- 207 (281)
T ss_pred -------cchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-ch-hh-hH---
Confidence 1235888899999999999887776544332101111122222222111111111111211 11 00 00
Q ss_pred CCcch-hhhHHHHHHHHHHHHHhhhccceeecccchhh---HHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611 265 KGPVV-YCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGG---ISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS 340 (383)
Q Consensus 265 ~g~~~-y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~as---vv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~ 340 (383)
...+. .++..+.+.+.+.+++.+. +...++ ....+.++++.+++++++||+++..+++|+++++.|...
T Consensus 208 ~~~~~~~~~~~~~s~l~~~l~~~al-------~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 208 RQILPSATLGGLMIGGAYALVLWAM-------TRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------hhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 00011 1122333333333322222 122222 223344555799999999999999999999999988753
No 15
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.57 E-value=2.6e-12 Score=125.28 Aligned_cols=264 Identities=9% Similarity=-0.029 Sum_probs=150.4
Q ss_pred hhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043611 47 SVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSW 125 (383)
Q Consensus 47 ~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~ 125 (383)
-+.+-+..|.-.+ + -.|+..+..-.. +..+++ ++... ++.+ +..++.... .++..+..+.+++.
T Consensus 16 Wg~~~~~~k~~~~-~-~~P~~~~~~R~~~a~l~l~-~~~~~-----~~~~----~~~~~~~~~---~~l~~~~~~~~~~~ 80 (295)
T PRK11689 16 WSTMVGLIRGVSE-S-LGPVGGAAMIYSVSGLLLL-LTVGF-----PRLR----QFPKRYLLA---GGLLFVSYEICLAL 80 (295)
T ss_pred HHHHHHHHHHHHc-c-CChHHHHHHHHHHHHHHHH-HHccc-----cccc----cccHHHHHH---HhHHHHHHHHHHHH
Confidence 3455666775332 2 456555555554 555544 33211 1111 112233322 23334455555555
Q ss_pred hh----cCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCC--CCCcchhHHHHH
Q 043611 126 GN----SYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPD--LPKSKYFIGFFC 199 (383)
Q Consensus 126 gl----~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~--~s~~~~~iG~~l 199 (383)
++ +++|++..+++.+++|+|+++++++++|||++++++.++++.++|++++..++.+.+..+ .+.+....|.++
T Consensus 81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~ 160 (295)
T PRK11689 81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGL 160 (295)
T ss_pred HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHH
Confidence 55 457888999999999999999999999999999999999999999888764432111000 011124579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhh-HHHHHH
Q 043611 200 TVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCL-TIIGNV 278 (383)
Q Consensus 200 ~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l-~l~~~a 278 (383)
.++|+++|++|..+.|+..++.. .+.+.. ..+.+++......+++. ..+.+.+. +.+.+ ..+.+.
T Consensus 161 ~l~aa~~~A~~~v~~k~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~-~~~~~~~~------~~~l~~~~~~t~ 226 (295)
T PRK11689 161 AFIGAFIWAAYCNVTRKYARGKN----GITLFF---ILTALALWIKYFLSPQP-AMVFSLPA------IIKLLLAAAAMG 226 (295)
T ss_pred HHHHHHHHHHHHHHHhhccCCCC----chhHHH---HHHHHHHHHHHHHhcCc-cccCCHHH------HHHHHHHHHHHH
Confidence 99999999999999999876653 111111 11222222222223321 11010111 11100 001111
Q ss_pred HHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 279 VTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 279 v~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
+.+.+++.+. -..+....+....+.++++.+++++++||+++..+++|+++++.|+.....
T Consensus 227 ~~~~l~~~al----~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 227 FGYAAWNVGI----LHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHH----HccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 1121111111 112333344445455555799999999999999999999999988766643
No 16
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.51 E-value=1.1e-12 Score=127.04 Aligned_cols=219 Identities=20% Similarity=0.216 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 043611 109 SILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDL 188 (383)
Q Consensus 109 ~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~ 188 (383)
.+.+|+..|.|-.+-++++.|.|+|.|++..|+.++|..+|+.++--||+++.-...+.+...|..+....+..
T Consensus 87 ~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq------ 160 (349)
T KOG1443|consen 87 LAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ------ 160 (349)
T ss_pred hhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc------
Confidence 34678888888888889999999999999999999999999999999999999888887666666665554321
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhh
Q 043611 189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVY-----CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVY 263 (383)
Q Consensus 189 s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~-----~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F 263 (383)
-...|+.++++|+++.|+.+++.|...|+-. ++..+..+|-|+++ .+...++..||....+..+.-.++
T Consensus 161 ---f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~---~Ll~~~l~fEG~~~~~~s~~f~~~ 234 (349)
T KOG1443|consen 161 ---FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI---GLLPLSLLFEGLHLITSSSIFRFQ 234 (349)
T ss_pred ---eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH---HHHHHHHHHcccccchhhhHHHhc
Confidence 2578999999999999999999999999975 45667777777753 334467778886543323222102
Q ss_pred cCCcchhhhHHHHHHHH-HHHHHhh--hccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611 264 DKGPVVYCLTIIGNVVT-WQLCFMG--TAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS 340 (383)
Q Consensus 264 ~~g~~~y~l~l~~~av~-wq~~~vg--~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~ 340 (383)
+.+. .+.++.-.... ...+.++ -.-+.-.+|+++.++....++..+.++|.+..+|.++.....|+.+++.|...
T Consensus 235 d~~~--~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~ 312 (349)
T KOG1443|consen 235 DTGL--ILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILL 312 (349)
T ss_pred CccH--HHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHH
Confidence 2221 11111111100 0111111 11123356899999999999999999999999999999999999999999998
Q ss_pred H
Q 043611 341 Y 341 (383)
Q Consensus 341 y 341 (383)
|
T Consensus 313 ~ 313 (349)
T KOG1443|consen 313 H 313 (349)
T ss_pred h
Confidence 7
No 17
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.50 E-value=7.7e-13 Score=131.02 Aligned_cols=313 Identities=20% Similarity=0.232 Sum_probs=205.6
Q ss_pred cchHHHHHHHHHHHHHhhhhhHhhhhHhhcCCC-cchhHHHHHHHhhhhhhhhhhhcc----ccccccCCC---------
Q 043611 30 KSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKG-SSRWVSTWVQCAGFPLLLPPIFLP----YYLFKCTER--------- 95 (383)
Q Consensus 30 ~~~~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg-~~~w~~t~vq~~g~plll~~~~~~----~~~~~~~~~--------- 95 (383)
++||.+.+++..++.+-=.+++-|.++-|+.+. ++|+..|.+-++-|-+-++|+.+- ++..+|+++
T Consensus 9 ~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~ 88 (416)
T KOG2765|consen 9 RWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEA 88 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhh
Confidence 334567777777777888899999999999986 589999999999998888765521 111111000
Q ss_pred --------------------------------------CC-----------C--CC--------cch-HHHHHHHHHHHH
Q 043611 96 --------------------------------------RP-----------F--SH--------FTT-KVLTLSILVGLL 115 (383)
Q Consensus 96 --------------------------------------~~-----------~--~~--------~~~-~~~~~~~~~Gll 115 (383)
++ . .+ ++. +..-.+...-.+
T Consensus 89 d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l 168 (416)
T KOG2765|consen 89 DAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL 168 (416)
T ss_pred hhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 00 0 01 111 233344445555
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhH
Q 043611 116 LGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFI 195 (383)
Q Consensus 116 ~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~i 195 (383)
--+.|+.|+.++.|+.++..+++-++.-+||..++.++..||+|+..++++.+-..|++++..++... .++...++..+
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~-~~~~~a~~~ll 247 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ-NSDLPASRPLL 247 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc-cccCCccchhH
Confidence 55677999999999999999999999999999999999999999999999997777777766665432 23344456789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCC----ccchhHhhhhcCCcchhh
Q 043611 196 GFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYP----EMKREAQTVYDKGPVVYC 271 (383)
Q Consensus 196 G~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~----~i~~e~~~~F~~g~~~y~ 271 (383)
|.++.+.+|++||+|..+-++-..+...-..+-.+..+++++..+++-=.+++-..+. ++|.. . +......
T Consensus 248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~----~-q~~~vv~ 322 (416)
T KOG2765|consen 248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSS----T-QFSLVVF 322 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCC----c-eeEeeeH
Confidence 9999999999999998877765555421122323334444433322221111111111 12110 0 1101111
Q ss_pred hHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 272 LTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 272 l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
..+.++.++=-++..++ ..+|++.+.+-+++-.|++.+.-+++=|.++++..++|...++.||....|....++++
T Consensus 323 ~~ligtvvSDylW~~a~----~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~~~ 398 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAV----LLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSKKD 398 (416)
T ss_pred hhHHHHHHHHHHHHHHH----HhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccccc
Confidence 12344433222222222 23466667777888899999999999999999999999999999999888876655554
Q ss_pred H
Q 043611 352 Q 352 (383)
Q Consensus 352 ~ 352 (383)
+
T Consensus 399 ~ 399 (416)
T KOG2765|consen 399 P 399 (416)
T ss_pred c
Confidence 3
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.49 E-value=1.1e-10 Score=110.46 Aligned_cols=210 Identities=17% Similarity=0.293 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHH-HHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 043611 110 ILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSV-IIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDL 188 (383)
Q Consensus 110 ~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~-~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~ 188 (383)
...++..+..+.+|..+++|+|++..+++.++.|+|+++++. +++|||++++++.++++..+|+.++...+..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~---- 149 (292)
T COG0697 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG---- 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch----
Confidence 334455557778898999999999999999999999999996 777999999999999988999877775544211
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCc
Q 043611 189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQL-VMEIAATALATVGMASDGGYPEMKREAQTVYDKGP 267 (383)
Q Consensus 189 s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~-~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~ 267 (383)
. . +..|..+.+.+++.++++....++.. +.. ...+.. +..+ ........... .+.. .+.+... -.
T Consensus 150 ~-~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~----~~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~----~~ 215 (292)
T COG0697 150 I-L-SLLGLLLALAAALLWALYTALVKRLS-RLG----PVTLALLLQLL-LALLLLLLFFL-SGFG-APILSRA----WL 215 (292)
T ss_pred h-H-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC----hHHHHHHHHHH-HHHHHHHHHHh-cccc-ccCCHHH----HH
Confidence 0 0 57899999999999999888888776 432 111111 1211 11111111111 1111 1111111 00
Q ss_pred chhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHh--hHHHH-HHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhh
Q 043611 268 VVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMT--AILAM-NVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG 344 (383)
Q Consensus 268 ~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~--l~~pv-~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~ 344 (383)
..-+..+..+.+.+.+...+ .+...++.+.. ..+|+ ..+++++++||+++..+++|..+++.|.....++
T Consensus 216 ~~~~~g~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 216 LLLYLGVFSTGLAYLLWYYA-------LRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 00000111111222221111 12223333322 44555 5667999999999999999999999888877664
No 19
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.49 E-value=9.3e-14 Score=132.72 Aligned_cols=213 Identities=19% Similarity=0.219 Sum_probs=159.1
Q ss_pred HHHHHHhhcC-CChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCC-C------CC---C
Q 043611 120 NLLFSWGNSY-LPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDK-S------PD---L 188 (383)
Q Consensus 120 ~~Ly~~gl~y-lp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~-~------~~---~ 188 (383)
|.+-++++++ +|...+-++++..++-|++.+++++|+|++.+|+.|++++|+|+++-.+.++.|. . .+ .
T Consensus 78 nv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~ 157 (330)
T KOG1583|consen 78 NVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQS 157 (330)
T ss_pred eeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccc
Confidence 3555688888 8888899999999999999999999999999999999999999888766554331 1 11 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCc-
Q 043611 189 PKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGP- 267 (383)
Q Consensus 189 s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~- 267 (383)
....-.+|+.+...|.++.|......|..|||+. .+.-|...|.-+.+....+. .++ ++..+.+. ...++
T Consensus 158 ~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG--Kh~~EalFytH~LsLP~Flf----~~~--div~~~~~-~~~se~ 228 (330)
T KOG1583|consen 158 DFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG--KHWKEALFYTHFLSLPLFLF----MGD--DIVSHWRL-AFKSES 228 (330)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHhccchHHH----hcc--hHHHHHHH-HhcCcc
Confidence 2223467999999999999999999999999996 33444444443322222211 122 23233322 11111
Q ss_pred ----------chhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHH
Q 043611 268 ----------VVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWG 337 (383)
Q Consensus 268 ----------~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G 337 (383)
++-+.-+..+.+..-.|.-|+--+....+|++.+++.++|.-+..+++++.|.+++++..++|..++..|
T Consensus 229 ~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~G 308 (330)
T KOG1583|consen 229 YLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFG 308 (330)
T ss_pred eeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHH
Confidence 2223335556667777888888888889999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 043611 338 FCSY 341 (383)
Q Consensus 338 ~~~y 341 (383)
...|
T Consensus 309 t~~f 312 (330)
T KOG1583|consen 309 TLLF 312 (330)
T ss_pred HHHH
Confidence 8887
No 20
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.39 E-value=2.2e-10 Score=111.93 Aligned_cols=222 Identities=13% Similarity=0.121 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHh-hhHHHHHHHHHHHhccccchhH----HHHHHHHHHHHHHhc
Q 043611 103 TKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLS-SQLLFNLVFSVIIVKQKITFSN----LNCVILLTLSSVLLA 177 (383)
Q Consensus 103 ~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~s-sql~Ftaifs~~ilkeK~t~~~----i~svvLltiG~vll~ 177 (383)
++.+...+..|++.+..|.+|..+.+|+.+|+...+.+ .|++++++++.+++|||.++++ +.|+++..+|.++++
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 57788889999999999999999999999999999988 9999999999999999999999 999999999988887
Q ss_pred ccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccch
Q 043611 178 LGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKR 257 (383)
Q Consensus 178 ~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~ 257 (383)
..++++.. +.++.++..|+++.+.|++.|+.|....|.. ++.++...+ .|.+.-+++..+..... . .. ++.+.
T Consensus 136 ~~~~~~~~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~-~~~~g~~~~~~~~~~~~-~-~~-~~~~~ 208 (290)
T TIGR00776 136 RSKDKSAG-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLL-PQAIGMVIGGIIFNLGH-I-LA-KPLKK 208 (290)
T ss_pred eccccccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehh-HHHHHHHHHHHHHHHHH-h-cc-cchHH
Confidence 65432111 0110223569999999999999999999865 232111110 13332222222222111 0 00 11100
Q ss_pred hHhhhhcCCcchhhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhH----HHHHH
Q 043611 258 EAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKA----VSTVL 333 (383)
Q Consensus 258 e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~ki----ig~~L 333 (383)
+. .......-++| .+....+..+.-+ +.+.-.+.+++.+.+.++.+.+++++||+.+..++ +|.++
T Consensus 209 --~~----~~~~~~~Gi~~-~ia~~~y~~~~~~---~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~l 278 (290)
T TIGR00776 209 --YA----ILLNILPGLMW-GIGNFFYLFSAQP---KVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIIL 278 (290)
T ss_pred --HH----HHHHHHHHHHH-HHHHHHHHHHccc---ccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHH
Confidence 00 00000001111 2222223333321 33444455666666555799999999999999999 99999
Q ss_pred HHHHHHHH
Q 043611 334 CAWGFCSY 341 (383)
Q Consensus 334 ~l~G~~~y 341 (383)
++.|....
T Consensus 279 Ii~~~~l~ 286 (290)
T TIGR00776 279 IIIAANIL 286 (290)
T ss_pred HHHHHHHH
Confidence 99887654
No 21
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.33 E-value=2.5e-10 Score=108.64 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=112.6
Q ss_pred HHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcch-HHHHHHHHHHHHHH
Q 043611 40 YLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTT-KVLTLSILVGLLLG 117 (383)
Q Consensus 40 ~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Gll~a 117 (383)
.++-.+..+.+.+..|. .. + -+++...+.... |.++++ ++...+ .+++..++..++.++ +++......|++.+
T Consensus 7 ~i~a~~~wg~~~~~~k~-~~-~-~~~~~i~~~R~~~a~~~l~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 81 (256)
T TIGR00688 7 SLLASFLFGYMYYYSKL-LK-P-LPATDILGHRMIWSFPFML-LSVTLF-RQWAALIERLKRIQKRPLILSLLLCGLLIG 81 (256)
T ss_pred HHHHHHHHHHHHHHHHH-hc-c-CCHHHHHHHHHHHHHHHHH-HHHHHH-cchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 33344456777888886 22 2 566666666665 666554 333221 111100011111112 33555667788888
Q ss_pred HHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHH
Q 043611 118 LNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGF 197 (383)
Q Consensus 118 ~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~ 197 (383)
.++.+|.+|++|+|++.++++.++.|+|+++++.+++|||++++++.++++..+|++++..+ +++. .
T Consensus 82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~~~--------~---- 148 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KGSL--------P---- 148 (256)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cCCc--------h----
Confidence 89999999999999999999999999999999999999999999999999999998877532 2110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043611 198 FCTVGAGLLFALYLPVMEMIYK 219 (383)
Q Consensus 198 ~l~L~Aa~l~gl~~~l~q~~~k 219 (383)
.+.++++++|++|....|+..+
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC
Confidence 3578899999999888877654
No 22
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.8e-10 Score=110.24 Aligned_cols=290 Identities=18% Similarity=0.166 Sum_probs=206.3
Q ss_pred cchHHHHHHHHHHHHHhhhhhHhhhhHhhcCCCcc--hhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHH
Q 043611 30 KSYLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSS--RWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLT 107 (383)
Q Consensus 30 ~~~~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~--~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (383)
+.+|.--.+.+.....++-..-.+..+-|+..|=| -|--|++|+.--..+-...+.. .+.+++..| | |
T Consensus 38 kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~--~~~k~r~iP---~--r--- 107 (367)
T KOG1582|consen 38 KPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL--IQTKRRVIP---W--R--- 107 (367)
T ss_pred CchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe--ecccceecc---h--h---
Confidence 55566666677778889999999999999998866 4999999987332221101111 111111112 2 2
Q ss_pred HHH-HHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCC
Q 043611 108 LSI-LVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSP 186 (383)
Q Consensus 108 ~~~-~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~ 186 (383)
.|. +.++++|.+ -|-.-++.|++-.+-.+..+++++=+++.+.|+=++|+.+..+.+..++.+|.++..+.|..
T Consensus 108 tY~~la~~t~gtm-GLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~---- 182 (367)
T KOG1582|consen 108 TYVILAFLTVGTM-GLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQ---- 182 (367)
T ss_pred HhhhhHhhhhhcc-ccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccc----
Confidence 222 233444444 55568888998888999999999999999999999999999999999999998888776542
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCC
Q 043611 187 DLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKG 266 (383)
Q Consensus 187 ~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g 266 (383)
.+..-..+|..++-+|-+.=|+..=+.|+.+++.. ....||..+..-++..++.+.+...||.- . +-.++-+-
T Consensus 183 -~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~--~ss~EmvfySy~iG~vflf~~mvlTge~f---~-a~~fcaeh 255 (367)
T KOG1582|consen 183 -TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNP--ASSSEMVFYSYGIGFVFLFAPMVLTGELF---S-AWTFCAEH 255 (367)
T ss_pred -cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCC--CCcceEEEeeecccHHHHHHHHHhcccch---h-hhHHHHhC
Confidence 22223568999999999999999889999999985 33478888888888888889998888741 1 11112222
Q ss_pred cchhhhHHHHHHHHHHH-HHhh---hccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611 267 PVVYCLTIIGNVVTWQL-CFMG---TAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV 342 (383)
Q Consensus 267 ~~~y~l~l~~~av~wq~-~~vg---~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi 342 (383)
++.-+-. ++...+ .++| +..++...++..+..|-+.+..++.++++++|-.+++-...-|+.+++.|+...+
T Consensus 256 p~~tyGy----~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ 331 (367)
T KOG1582|consen 256 PVRTYGY----AFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNM 331 (367)
T ss_pred cHhHHHH----HHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhc
Confidence 2211111 111111 2233 3333444577788888999999999999999999999999999999999998888
Q ss_pred hhc
Q 043611 343 YGM 345 (383)
Q Consensus 343 y~~ 345 (383)
|.+
T Consensus 332 ysk 334 (367)
T KOG1582|consen 332 YSK 334 (367)
T ss_pred ccC
Confidence 865
No 23
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.26 E-value=9.1e-11 Score=102.54 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhc-C--Ccch
Q 043611 196 GFFCTVGAGLLFALYLPVMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYD-K--GPVV 269 (383)
Q Consensus 196 G~~l~L~Aa~l~gl~~~l~q~~~kk~~---~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~-~--g~~~ 269 (383)
|+++++.|+++.+++.++.|+.+++.. .....++++.+.+..+.+++....+..++++..+...+. ++ + ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEI-FGEELSSDPN 79 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHh-hhhhhcchHH
Confidence 789999999999999999999999941 346799999999999999999776666654422222221 11 1 1234
Q ss_pred hhhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 270 YCLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 270 y~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
....+..+.+.+.+.+.....++..+|+++-+++..++.+++.++++++|||+++..+++|.++++.|+..|.|
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 55566777778888888888888899999999999999999999999999999999999999999999998865
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.24 E-value=1.6e-11 Score=121.16 Aligned_cols=289 Identities=16% Similarity=0.143 Sum_probs=177.7
Q ss_pred HHHHHHH-HHHHHHhhhhhHhhhhHhhcC-CCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHH
Q 043611 33 LVLLVTN-YLCLFVGSVSASLLSKYYFNH-KGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSI 110 (383)
Q Consensus 33 ~~~~~~~-~~~l~~g~~~~~Ll~r~y~~~-gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (383)
+.+.... +..=......-.++.|.=.++ |.+-||.-|.++++---+.....-..+ ..++.+.++ +.-+.--+
T Consensus 14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~-~~~~~~~~~-----~~~~~~ll 87 (316)
T KOG1441|consen 14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK-LVPPSKISS-----KLPLRTLL 87 (316)
T ss_pred hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc-CCCCCcccc-----ccchHHHH
Confidence 4444444 444444444444444444444 778899999987762222221111121 111111111 11233334
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 043611 111 LVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPK 190 (383)
Q Consensus 111 ~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~ 190 (383)
.+|+..+..+.+-+.++.|.|+|.+.++.++.|+|+.++++++.+|++++....+++....|+.+-...+.
T Consensus 88 pl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~--------- 158 (316)
T KOG1441|consen 88 PLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL--------- 158 (316)
T ss_pred HHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---------
Confidence 56777667777778999999999999999999999999999999999999999999877777555544332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH--HhcCCCCccchhHhhhhcCCcc
Q 043611 191 SKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGM--ASDGGYPEMKREAQTVYDKGPV 268 (383)
Q Consensus 191 ~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl--~~~g~~~~i~~e~~~~F~~g~~ 268 (383)
+-...|++.++.+-+.++++..+.+...++-.--...+++--+++-++.+.+++-. ..+++ ... . +..+.|
T Consensus 159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~-~~~-~-----~~~~~~ 231 (316)
T KOG1441|consen 159 SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGN-KFV-G-----FLTAPW 231 (316)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhccc-cee-e-----eecccc
Confidence 23689999999999999999999999985321113466666666555554444321 11121 000 0 122222
Q ss_pred hhh-hHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 269 VYC-LTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 269 ~y~-l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
.+- ..+..+.+..-+++....-++-.+|.++=++....+-.++.+.++++|+|+.++.++.|..+++.|...|-+
T Consensus 232 ~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 232 FVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 211 111111121111222222223345666667776677777788889999999999999999999977666544
No 25
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.21 E-value=5.3e-09 Score=101.27 Aligned_cols=215 Identities=17% Similarity=0.180 Sum_probs=145.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC
Q 043611 101 FTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS 180 (383)
Q Consensus 101 ~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~ 180 (383)
.+||.+....+.+++++.|-.+|.++.++=-+--.|+=.--+|.++.+++.+++|||+++.|+++++++.+|+....++.
T Consensus 67 ~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 67 KQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 45688999999999999999999999998666666788888999999999999999999999999999999999888776
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccch
Q 043611 181 GHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVY---CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKR 257 (383)
Q Consensus 181 ~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~---~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~ 257 (383)
++- .++. ++=++.|++|.. .+|++. -....+|+..... ++.+-++...+-.+
T Consensus 147 g~l---------pwva----l~la~sf~~Ygl----~RK~~~v~a~~g~~lE~l~l~p-----~al~yl~~l~~~~~--- 201 (293)
T COG2962 147 GSL---------PWVA----LALALSFGLYGL----LRKKLKVDALTGLTLETLLLLP-----VALIYLLFLADSGQ--- 201 (293)
T ss_pred CCC---------cHHH----HHHHHHHHHHHH----HHHhcCCchHHhHHHHHHHHhH-----HHHHHHHHHhcCch---
Confidence 532 2333 334557888743 344443 2345666655443 23322222222111
Q ss_pred hHhhhhcCCcchhhh----HHHHHHHHHHHHHhhhccceeecccchhhH---HHhhHHHHHHHHHHHHhCCcchhhhHHH
Q 043611 258 EAQTVYDKGPVVYCL----TIIGNVVTWQLCFMGTAGMVFLTSSLTGGI---SMTAILAMNVIAGVVVYGDSFGGVKAVS 330 (383)
Q Consensus 258 e~~~~F~~g~~~y~l----~l~~~av~wq~~~vg~vGlv~~~Ssl~asv---v~~l~~pv~~ilAvi~fgE~~~~~kiig 330 (383)
+ .........+ .=..+++...++..+. ..+.-++ ..-+.+.+..++|+.++||+++..|.++
T Consensus 202 -~---~~~~~~~~~~LLv~aG~vTavpL~lf~~aa-------~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~ 270 (293)
T COG2962 202 -F---LQQNANSLWLLLVLAGLVTAVPLLLFAAAA-------KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVT 270 (293)
T ss_pred -h---hhcCCchHHHHHHHhhHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 0 1111121111 1222444444444443 2333333 3446666679999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhhh
Q 043611 331 TVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 331 ~~L~l~G~~~yiy~~~~~~~k 351 (383)
.+++-.|...|...+..+.+|
T Consensus 271 F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 271 FAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998876554444
No 26
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.95 E-value=1.3e-08 Score=95.19 Aligned_cols=214 Identities=11% Similarity=0.011 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcc
Q 043611 113 GLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSK 192 (383)
Q Consensus 113 Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~ 192 (383)
..++.-+|.+...++.+.++...... +.|.+.++++...+++.+++..|+.++.++..|......++..++ ....+.
T Consensus 6 a~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~--~~~~g~ 82 (222)
T TIGR00803 6 IHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK--TLMFGN 82 (222)
T ss_pred chHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc--cccccc
Confidence 34455566555577777777777777 777778888887778888888877777777776555544432211 122345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchh
Q 043611 193 YFIGFFCTVGAGLLFALYLPVMEMIYKKVY--CYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVY 270 (383)
Q Consensus 193 ~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~--~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y 270 (383)
...|..+.+++....++-....|+.+|+.. .|...+++..+.... ...+....+ ....+. .. |.++....
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~-~~~~~~--~~-~~~~~~~~ 154 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFS----TFSVLLWSD-GTLISN--FG-FFIGYPTA 154 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHH----HHHHHhhcc-cchhhc--cC-cccCCchH
Confidence 788999999999999998888888877653 233444444444321 123332222 111111 11 22222211
Q ss_pred hhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611 271 CLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS 340 (383)
Q Consensus 271 ~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~ 340 (383)
...++.+. .+....+.....+.++...+++.+++..++.++++++|||+++..+.+|..+++.|...
T Consensus 155 ~~~~~~~~---a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLN---VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHH---HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 11111110 00011122223456788888899999999999999999999999999999999976544
No 27
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.94 E-value=5e-08 Score=94.91 Aligned_cols=223 Identities=16% Similarity=0.186 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCC
Q 043611 108 LSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPD 187 (383)
Q Consensus 108 ~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~ 187 (383)
-+..+++.--....+-..+++|++--|..+-.+++.+=+++...++-|+|++.+......+.++|+.+..+.+.+|.+.+
T Consensus 85 ~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~ 164 (327)
T KOG1581|consen 85 KYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSK 164 (327)
T ss_pred HHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccc
Confidence 34455555445556666999999999999999999999999999999999999999999999999888888776553333
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCc
Q 043611 188 LPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGP 267 (383)
Q Consensus 188 ~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~ 267 (383)
..+.+.+.|+.+..+--++=|+-..--..+++++. ....+|...+.++.++...++++..|.+. ++-+ |-.--
T Consensus 165 ~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k--~s~~~mM~~vNLf~~i~~~~~li~qg~~~----~av~-F~~~h 237 (327)
T KOG1581|consen 165 SGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYK--VSSLHMMFGVNLFSAILNGTYLILQGHLL----PAVS-FIKEH 237 (327)
T ss_pred cCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCC--ccHhHHHHHHHHHHHHHHHHhhhcCCCCc----hHHH-HHHcC
Confidence 33345789999998888877776555666666654 55778888888998999999987777653 1222 32111
Q ss_pred chhhhHHHHHHHHHHHHHhhhcccee--ec----ccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611 268 VVYCLTIIGNVVTWQLCFMGTAGMVF--LT----SSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY 341 (383)
Q Consensus 268 ~~y~l~l~~~av~wq~~~vg~vGlv~--~~----Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y 341 (383)
.. ..+..+.+ +..|.+|..| ++ +++.-..|.+.|..++.+++.+.||.+++..|++|..+++.|...=
T Consensus 238 p~----~~~Di~l~--s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 238 PD----VAFDILLY--STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE 311 (327)
T ss_pred hh----HHHHHHHH--HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence 10 23333333 3367777744 43 5666666788999999999999999999999999999998665544
Q ss_pred Hh
Q 043611 342 VY 343 (383)
Q Consensus 342 iy 343 (383)
+|
T Consensus 312 ~~ 313 (327)
T KOG1581|consen 312 IL 313 (327)
T ss_pred HH
Confidence 44
No 28
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.88 E-value=2.5e-08 Score=94.06 Aligned_cols=202 Identities=15% Similarity=0.195 Sum_probs=149.6
Q ss_pred HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHH
Q 043611 124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGA 203 (383)
Q Consensus 124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~A 203 (383)
+.+++|.|-.|..+=.|++|+=+++++.++.+++++|+....+.+..+|+++.--.+. +..+.+++...+|=++.+.+
T Consensus 103 N~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~--Kv~g~e~~t~g~GElLL~lS 180 (337)
T KOG1580|consen 103 NQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN--KVGGAEDKTFGFGELLLILS 180 (337)
T ss_pred cchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc--ccCCCcccccchHHHHHHHH
Confidence 3889999999999999999999999999999999999999999888888776654432 22344445567899999999
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcC-CcchhhhHHHHHHHHHH
Q 043611 204 GLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDK-GPVVYCLTIIGNVVTWQ 282 (383)
Q Consensus 204 a~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~-g~~~y~l~l~~~av~wq 282 (383)
-.+=|+-.++.++..+.+- ...-+|..++.+++++.+.+|++..||.. |.-. |.+ .+. ..|+.....
T Consensus 181 L~mDGlTg~~Qdrira~yq--~~g~~MM~~~NlwStL~Lg~g~lfTGElw----eF~y-F~~RhP~-----~~~~l~l~a 248 (337)
T KOG1580|consen 181 LAMDGLTGSIQDRIRASYQ--RTGTSMMFYTNLWSTLYLGAGLLFTGELW----EFFY-FVQRHPY-----VFWDLTLLA 248 (337)
T ss_pred HHhcccchhHHHHHHHhhc--cCchhhHHHHHHHHHHHhhhhheehhhHH----HHHH-HHHhccH-----HHHHHHHHH
Confidence 9999998888888877774 22334556677788888889998888742 3222 221 111 122211111
Q ss_pred HHHhhhccceee------cccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611 283 LCFMGTAGMVFL------TSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY 341 (383)
Q Consensus 283 ~~~vg~vGlv~~------~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y 341 (383)
.-++.|.++. -+-++-+++-+-+.-.+.+.++++|++++++.|++|.++++.|...=
T Consensus 249 --i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 249 --IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred --HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 1334444331 25667788888899999999999999999999999999999776554
No 29
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.72 E-value=2.7e-08 Score=83.81 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=65.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCC
Q 043611 107 TLSILVGLLLG-LNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGH 182 (383)
Q Consensus 107 ~~~~~~Gll~a-~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~ 182 (383)
......|++.+ .++.+|.+|++|.| +..+.+.+++++|+++++.+++|||++++++.++++.++|++++..++.+
T Consensus 35 ~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 35 LWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34445565554 77899999999999 58889999999999999999999999999999999999999999987653
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.72 E-value=1.1e-07 Score=79.03 Aligned_cols=119 Identities=19% Similarity=0.296 Sum_probs=84.9
Q ss_pred hhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH-HHHHHHHHHHhh
Q 043611 49 SASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL-LGLNNLLFSWGN 127 (383)
Q Consensus 49 ~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll-~a~~~~Ly~~gl 127 (383)
....+.|...++ -+..++..+-...+.+ +++..... .+++ ....+++.+......|++ .+..+.+|..++
T Consensus 5 ~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 5 IYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLIL--GRKP-----FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred eHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhh--cccc-----ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 345566666665 2444555555555666 44322222 1111 122334555555666655 577889999999
Q ss_pred cCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 043611 128 SYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLL 176 (383)
Q Consensus 128 ~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll 176 (383)
+++|++..+++..++|+++++++++++|||++++++.|+++..+|.+++
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888887765
No 31
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.4e-08 Score=97.61 Aligned_cols=227 Identities=22% Similarity=0.283 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCC
Q 043611 105 VLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDK 184 (383)
Q Consensus 105 ~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~ 184 (383)
.+-.+++.=.+++.+| +.++|.|++-|.+=++.-++||.+++|.++|||-+..-..+..+..+| ..+|++..
T Consensus 105 vlplsvVfi~mI~fnn----lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~G-F~lGvdqE--- 176 (347)
T KOG1442|consen 105 VLPLSVVFILMISFNN----LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILG-FGLGVDQE--- 176 (347)
T ss_pred hcchhheeeeehhccc----eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheeh-heeccccc---
Confidence 4445555556666777 667999999999999999999999999999999998888877644433 44444432
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhc
Q 043611 185 SPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYD 264 (383)
Q Consensus 185 ~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~ 264 (383)
+.++.-.+.|.+.-+.|++.-++-.+..++..-.+ -.-+-.+..+..+.|.++.+-.+++.||+..+ .. |.
T Consensus 177 --~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v--~~~iw~lt~ynnv~a~lLflpll~lnge~~~v----~~-~~ 247 (347)
T KOG1442|consen 177 --GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPV--GDCIWRLTAYNNVNALLLFLPLLILNGEFQAV----VG-FP 247 (347)
T ss_pred --cccCccchhhhHHHHHHHHHHHHHHHhhheecccc--cCeehhhHHHHHHHHHHHHHHHHHHcchHHHH----cC-cc
Confidence 22333357899999999999988443343222222 12355566677778888888778888987643 22 44
Q ss_pred CCc-chhhhHHHH-HHHHHHHHHhh-hccc-eeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611 265 KGP-VVYCLTIIG-NVVTWQLCFMG-TAGM-VFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS 340 (383)
Q Consensus 265 ~g~-~~y~l~l~~-~av~wq~~~vg-~vGl-v~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~ 340 (383)
+-+ +.++..+.. ..+. +.+| ++|. +..+|.++-++--+.+-..-.++|+.+++|.-++..+-|-++++.|...
T Consensus 248 ~l~a~~Fw~~mtLsglfg---F~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~ 324 (347)
T KOG1442|consen 248 HLPAIKFWILMTLSGLFG---FAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLA 324 (347)
T ss_pred cchHHHHHHHHHHHHHHH---HHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHH
Confidence 442 222222111 1111 2333 3444 4457888888888888888899999999999999999999999999998
Q ss_pred HHhhcchhhhh
Q 043611 341 YVYGMYVKLKL 351 (383)
Q Consensus 341 yiy~~~~~~~k 351 (383)
|.+-+-.+++|
T Consensus 325 YT~vk~~em~~ 335 (347)
T KOG1442|consen 325 YTLVKEHEMRK 335 (347)
T ss_pred HHHHHHHHHHh
Confidence 87754333333
No 32
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.67 E-value=3.4e-07 Score=84.55 Aligned_cols=209 Identities=16% Similarity=0.243 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcch
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKY 193 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~ 193 (383)
++--+.|++|-.+++.+++|..+-+.+++-+|+-+++++.+|+|+.-.++.+.+++.-|+++++-.+. ..+..
T Consensus 61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-------~~a~e 133 (290)
T KOG4314|consen 61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-------EHADE 133 (290)
T ss_pred EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-------hhhhh
Confidence 33346789999999999999999999999999999999999999999999999988888777763321 11337
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cc---hhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCc
Q 043611 194 FIGFFCTVGAGLLFALYLPVMEMIYKKVY---CY---SMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGP 267 (383)
Q Consensus 194 ~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~---~~---~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~ 267 (383)
++|+.++++++...++| +.+||+.. .+ .+.+.-..+..+.-..+-.+-+...|. +...+ |...+
T Consensus 134 ~iGi~~AV~SA~~aAlY----KV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V-----E~~qs-FA~~P 203 (290)
T KOG4314|consen 134 IIGIACAVGSAFMAALY----KVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV-----EHLQS-FAAAP 203 (290)
T ss_pred hhhHHHHHHHHHHHHHH----HHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch-----HHHHH-HhhCC
Confidence 89999999999999997 66777764 11 122111111111111111111111221 00222 44443
Q ss_pred chhhhHHHHHHHHHHHHHhhh-ccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 268 VVYCLTIIGNVVTWQLCFMGT-AGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 268 ~~y~l~l~~~av~wq~~~vg~-vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
|. .+.+.+..|..++.-+ +|+ ..+.-+.-++=..++.|.....-.++=+-.++...+.|..++.+|+...+.
T Consensus 204 WG---~l~G~A~L~lAFN~~iN~Gi-aL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 204 WG---CLCGAAGLSLAFNFLINFGI-ALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred ch---hhhhHHHHHHHHhhheeehh-hhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 31 2344455555544332 111 111111112223355666666666666777888999999999999887765
No 33
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.65 E-value=2e-08 Score=96.26 Aligned_cols=210 Identities=17% Similarity=0.143 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC--CCC
Q 043611 106 LTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS--GHD 183 (383)
Q Consensus 106 ~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~--~~~ 183 (383)
+.+=...|.+ +...+| +++.|+|.+=++++.-+.|.||++|++.++|||+|++...+..+...|++++.=.+ ++|
T Consensus 100 LiLRg~mG~t--gvmlmy-ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~ 176 (346)
T KOG4510|consen 100 LILRGFMGFT--GVMLMY-YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGD 176 (346)
T ss_pred EEeehhhhhh--HHHHHH-HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCC
Confidence 3333445555 444777 99999999999999999999999999999999999999999987777766654222 222
Q ss_pred CCC--CCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHh
Q 043611 184 KSP--DLPK-SKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQ 260 (383)
Q Consensus 184 ~~~--~~s~-~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~ 260 (383)
+.. +.+. ....-|-...+.+...-+-..++-+..=|+.. +.+ .+ -|-++++.+..++|...-|+++ +|+--+
T Consensus 177 ~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~m--sv-syf~~i~lV~s~I~~~~ig~~~-lP~cgk 251 (346)
T KOG4510|consen 177 TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIM--SV-SYFSLITLVVSLIGCASIGAVQ-LPHCGK 251 (346)
T ss_pred CccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEE--Ee-hHHHHHHHHHHHHHHhhcccee-cCcccc
Confidence 211 1111 11223444444444433333344455555552 111 11 1234566667777776667763 665333
Q ss_pred hhhcCCcchhhhHHHHHHHHHHH-HHhhhccceeecccchhhH--HHhhHHHH-HHHHHHHHhCCcchhhhHHHHHHHHH
Q 043611 261 TVYDKGPVVYCLTIIGNVVTWQL-CFMGTAGMVFLTSSLTGGI--SMTAILAM-NVIAGVVVYGDSFGGVKAVSTVLCAW 336 (383)
Q Consensus 261 ~~F~~g~~~y~l~l~~~av~wq~-~~vg~vGlv~~~Ssl~asv--v~~l~~pv-~~ilAvi~fgE~~~~~kiig~~L~l~ 336 (383)
+ +..+..+...-+.-|+ .-+|. ..--+|- +.+..-.+ +.+..+++|||.++++.++|+++++.
T Consensus 252 d------r~l~~~lGvfgfigQIllTm~l-------QiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvs 318 (346)
T KOG4510|consen 252 D------RWLFVNLGVFGFIGQILLTMGL-------QIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVS 318 (346)
T ss_pred c------eEEEEEehhhhhHHHHHHHHHh-------hhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeeh
Confidence 2 2222223222333333 11111 1111111 22223333 57888999999999999999999883
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.64 E-value=8.3e-06 Score=77.95 Aligned_cols=240 Identities=17% Similarity=0.168 Sum_probs=142.5
Q ss_pred hhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 043611 54 SKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVS 133 (383)
Q Consensus 54 ~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~S 133 (383)
.|--|-+-| +|-.|++-.+--.+.+.+++=+ +++| ++++.+..-..+|+.++..|++|..++..+|.+
T Consensus 31 Ak~LFP~vG--~~g~t~lRl~~aaLIll~l~RP--wr~r--------~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlG 98 (292)
T COG5006 31 AKSLFPLVG--AAGVTALRLAIAALILLALFRP--WRRR--------LSKPQRLALLAYGVSLGGMNLLFYLSIERIPLG 98 (292)
T ss_pred HHHHccccC--hhhHHHHHHHHHHHHHHHHhhH--HHhc--------cChhhhHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 444455533 3446666666333333233222 2221 334455666779999999998888999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 043611 134 TSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPV 213 (383)
Q Consensus 134 t~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l 213 (383)
+..-+--+.++-.++++ .+|..-..|.++ +..|..++.-...+. ..-..+|..++++|.++|++|...
T Consensus 99 iAVAiEF~GPL~vA~~~----sRr~~d~vwvaL--AvlGi~lL~p~~~~~------~~lDp~Gv~~Al~AG~~Wa~YIv~ 166 (292)
T COG5006 99 IAVAIEFTGPLAVALLS----SRRLRDFVWVAL--AVLGIWLLLPLGQSV------WSLDPVGVALALGAGACWALYIVL 166 (292)
T ss_pred hhhhhhhccHHHHHHHh----ccchhhHHHHHH--HHHHHHhheeccCCc------CcCCHHHHHHHHHHhHHHHHHHHH
Confidence 99888888887776654 455555556555 566766665333211 122579999999999999999999
Q ss_pred HHHHHHhhc-cchhHHHHHHHHHHHHHHHHH-HHHHhcCCCCccchhHhhhhcCCcc---hhhhHHHHHHHHHHHHHhhh
Q 043611 214 MEMIYKKVY-CYSMVMEMQLVMEIAATALAT-VGMASDGGYPEMKREAQTVYDKGPV---VYCLTIIGNVVTWQLCFMGT 288 (383)
Q Consensus 214 ~q~~~kk~~-~~~~vlemq~~~~l~a~~~~~-vgl~~~g~~~~i~~e~~~~F~~g~~---~y~l~l~~~av~wq~~~vg~ 288 (383)
+|+.=+... +-... ...++|.++.. +|..-.|. . |..-+. ..-..+..+++.|.+=-+-
T Consensus 167 G~r~g~~~~g~~g~a-----~gm~vAaviv~Pig~~~ag~--~--------l~~p~ll~laLgvavlSSalPYsLEmiA- 230 (292)
T COG5006 167 GQRAGRAEHGTAGVA-----VGMLVAALIVLPIGAAQAGP--A--------LFSPSLLPLALGVAVLSSALPYSLEMIA- 230 (292)
T ss_pred cchhcccCCCchHHH-----HHHHHHHHHHhhhhhhhcch--h--------hcChHHHHHHHHHHHHhcccchHHHHHH-
Confidence 999987442 11111 12234444433 55422221 1 111110 0011122334444331111
Q ss_pred ccceeecccchhhHH---HhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHH
Q 043611 289 AGMVFLTSSLTGGIS---MTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFC 339 (383)
Q Consensus 289 vGlv~~~Ssl~asvv---~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~ 339 (383)
.+++.+... ..+.+.+..+.+++++||.++..|+.|...++.+..
T Consensus 231 ------L~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 231 ------LRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred ------HhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 234444433 334444468999999999999999999999996554
No 35
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.5e-06 Score=83.82 Aligned_cols=208 Identities=10% Similarity=0.089 Sum_probs=137.8
Q ss_pred HhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHH
Q 043611 125 WGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAG 204 (383)
Q Consensus 125 ~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa 204 (383)
.+++|+|++++++++..-++++++.-..++|.|+++..+.+++...+|+...+..+.+. ...|....+...
T Consensus 96 ~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf---------~~~gY~w~~~n~ 166 (314)
T KOG1444|consen 96 KSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF---------NLRGYSWALANC 166 (314)
T ss_pred ccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee---------cchhHHHHHHHH
Confidence 78899999999999999999999999999999999999999998888877777665543 234888888888
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHH-
Q 043611 205 LLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQL- 283 (383)
Q Consensus 205 ~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~- 283 (383)
++-+.+....++..+... ..-.++..|-.+.+..+..+-.+..|||+++ . +....|.+.-.+++-.++-..
T Consensus 167 ~~~a~~~v~~kk~vd~~~--l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l-----~-~~~~~~~~~~~~~~~~lScv~g 238 (314)
T KOG1444|consen 167 LTTAAFVVYVKKSVDSAN--LNKFGLVFYNNLLSLPPLLILSFITGELDAL-----S-LNFDNWSDSSVLVVMLLSCVMG 238 (314)
T ss_pred HHHHHHHHHHHHhhcccc--ccceeEEeehhHHHHHHHHHHHHHhcchHHH-----H-hhcccccchhHHHHHHHHHHHH
Confidence 888887777776666543 1122233344555566666556677887522 1 222223211111111110000
Q ss_pred HHhhhccc--eeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhh
Q 043611 284 CFMGTAGM--VFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKL 349 (383)
Q Consensus 284 ~~vg~vGl--v~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~ 349 (383)
..+.-.+. .-..|+.+-+++-..-.-.+.+..+++.|+++++..++|..+.+.|-..|-|..+.++
T Consensus 239 f~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 239 FGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred HHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 00011111 1123777777777444555677777788899999999999999999888887655443
No 36
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.28 E-value=6e-06 Score=69.90 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL 178 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~ 178 (383)
+.++....++..+++.+|.|++..+.+++.+++++.+++++|||+|++++.|+++...|+++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 55677889999999999999999999999999999999999999999999999999999888764
No 37
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.27 E-value=2.3e-05 Score=79.18 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHH-HHHHH
Q 043611 33 LVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKV-LTLSI 110 (383)
Q Consensus 33 ~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 110 (383)
+++..+..++=.+..+...++.|..-.+-....++++|...+ +.|..++.++.. +...+.....+.... ..++
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~i~y- 261 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVE----KNNPSVWIIHFDITLITIVT- 261 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHc----cCCcccceeccchHHHHHHH-
Confidence 444444433333444566677776544432333445555444 555544333221 111111111122232 2223
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCC
Q 043611 111 LVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG 181 (383)
Q Consensus 111 ~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~ 181 (383)
.|+..+....+|++++++++++..++....+|+|++++++++++|++++.++.|.++...|..+...+..
T Consensus 262 -~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 262 -MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred -HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444556668999999999999999999999999999999999999999999999988888877765543
No 38
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.19 E-value=1e-07 Score=90.95 Aligned_cols=254 Identities=13% Similarity=0.137 Sum_probs=157.1
Q ss_pred cCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHH
Q 043611 59 NHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALL 138 (383)
Q Consensus 59 ~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll 138 (383)
.+|-|-|=.||++--+--.+..-|...+ |+ +.-...+|. |+++++.=--.|++---+.+|++--...++
T Consensus 42 ~k~iN~Pt~QtFl~Y~LLalVY~~~~~f----R~----~~~~~~~~h---Yilla~~DVEaNy~vV~AyQyTsmtSi~lL 110 (336)
T KOG2766|consen 42 RKGINAPTSQTFLNYVLLALVYGPIMLF----RR----KYIKAKWRH---YILLAFVDVEANYFVVKAYQYTSMTSIMLL 110 (336)
T ss_pred hccCCCccHHHHHHHHHHHHHHhhHHHh----hh----HHHHHHHHH---hhheeEEeecccEEEeeehhhcchHHHHHH
Confidence 3345666667766554333333333333 22 111122232 555554433334455578888888888999
Q ss_pred HhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043611 139 LSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIY 218 (383)
Q Consensus 139 ~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~ 218 (383)
-+-..+-..+++++++|-|+.+.++.|+++...|++++..++-..+ +...+.+...|+++++.+|-+||..-...|..-
T Consensus 111 Dcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag-d~aggsnp~~GD~lvi~GATlYaVSNv~EEflv 189 (336)
T KOG2766|consen 111 DCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG-DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLV 189 (336)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc-cccCCCCCccCcEEEEecceeeeeccccHHHHH
Confidence 9999999999999999999999999999999999888876663221 112223467899999999999999988888888
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHhcCC-CCccchhHhhhhcCCcchhhhHHHHHHHHHHHHHhhhccceeec-c
Q 043611 219 KKVYCYSMVMEMQLVMEIAATALATVGMASDGG-YPEMKREAQTVYDKGPVVYCLTIIGNVVTWQLCFMGTAGMVFLT-S 296 (383)
Q Consensus 219 kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~-~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~~~vg~vGlv~~~-S 296 (383)
||. ...|+....+++++++..+=++.+.. .+.+.++.+- ..+ +......+.++..-. +.... |
T Consensus 190 kn~----d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i-------~~y--l~f~L~MFllYsl~p--il~k~~~ 254 (336)
T KOG2766|consen 190 KNA----DRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAI-------FLY--LRFALTMFLLYSLAP--ILIKTNS 254 (336)
T ss_pred hcC----cHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHH-------HHH--HHHHHHHHHHHHhhH--HheecCC
Confidence 887 47788888999999888887655543 1222121110 011 111112222222211 11111 1
Q ss_pred cchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611 297 SLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY 341 (383)
Q Consensus 297 sl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y 341 (383)
+-.-|+- +...=.|.+-+-.||-+.+|.-.++...+..|+..|
T Consensus 255 aT~~nls--lLTsDmwsl~i~~FgYhv~wLY~laF~~i~~GliiY 297 (336)
T KOG2766|consen 255 ATMFNLS--LLTSDMWSLLIRTFGYHVDWLYFLAFATIATGLIIY 297 (336)
T ss_pred ceEEEhh--HhHHHHHHHHHHHHhcchhhhhHHHHHHHHHhhEEe
Confidence 1111111 111112333337788889999999999999888776
No 39
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.16 E-value=6.9e-05 Score=70.77 Aligned_cols=129 Identities=18% Similarity=0.212 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhhhhHhhhhHhhcCCCcch-hHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHH
Q 043611 36 LVTNYLCLFVGSVSASLLSKYYFNHKGSSR-WVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGL 114 (383)
Q Consensus 36 ~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~-w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl 114 (383)
..+..++-.++.+...++.|....+.+..+ .+..+....|..+++ |+... .++. + . .+++.+..-...|+
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~---~~~~-~-~---~~~~~~~~~~~~~~ 199 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLL-PFAWF---LGPN-P-Q---ALSLQWGALLYLGL 199 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHH-HHHHh---cCCC-C-C---cchHHHHHHHHHHH
Confidence 334444444556666777777665433222 333344455665555 33332 1111 1 1 12333433333443
Q ss_pred H-HHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Q 043611 115 L-LGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSS 173 (383)
Q Consensus 115 l-~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~ 173 (383)
+ ......+|..+++++|++..+++..++|++++++++++++||+++.++.|+++...|+
T Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 3 3456688999999999999999999999999999999999999999999999877763
No 40
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.12 E-value=0.00014 Score=71.02 Aligned_cols=132 Identities=15% Similarity=0.031 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH-
Q 043611 37 VTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL- 115 (383)
Q Consensus 37 ~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll- 115 (383)
.+..++=.++.+...++.|.+-++ .+++..++.+..|--+++ |+... ... ... .++..+...+..|++
T Consensus 150 ~ll~l~aa~~~a~~~v~~r~~~~~--~~~~~~~~~~~~~~~~l~-~~~~~---~~~---~~~--~~~~~~~~~l~lgv~~ 218 (293)
T PRK10532 150 AALALGAGACWAIYILSGQRAGAE--HGPATVAIGSLIAALIFV-PIGAL---QAG---EAL--WHWSILPLGLAVAILS 218 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHH-HHHHH---ccC---ccc--CCHHHHHHHHHHHHHH
Confidence 333344445566677777766432 334444666655544433 33332 111 111 222222222345544
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611 116 LGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG 179 (383)
Q Consensus 116 ~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~ 179 (383)
....+.+|+++++++|++..+++...+|+|++++++++++|++++.++.|.++...|+......
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3345579999999999999999999999999999999999999999999999888876666544
No 41
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.09 E-value=1.7e-05 Score=68.58 Aligned_cols=128 Identities=15% Similarity=0.191 Sum_probs=93.5
Q ss_pred HHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 043611 44 FVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLF 123 (383)
Q Consensus 44 ~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly 123 (383)
+.-.+..|+-.|.=-++ ..+=++|.+-+.-.-+.+...++. .++.+.+ ...++|.+..-++.|+..|+.-++|
T Consensus 12 A~fa~L~~iF~KIGl~~--vdp~~At~IRtiVi~~~l~~v~~~----~g~~~~~-~~~~~k~~lflilSGla~glswl~Y 84 (140)
T COG2510 12 ALFAGLTPIFAKIGLEG--VDPDFATTIRTIVILIFLLIVLLV----TGNWQAG-GEIGPKSWLFLILSGLAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHHHHHHHHh----cCceecc-cccCcceehhhhHHHHHHHHHHHHH
Confidence 33456677766664443 334567777766332222122221 1111111 1256688888899999999999999
Q ss_pred HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611 124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL 178 (383)
Q Consensus 124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~ 178 (383)
+.+++.=++|-..=+-.+.++|+++||++++|||+|..+++|++|.++|++++..
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999988899999999999999999999999999999999999887753
No 42
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.06 E-value=0.00011 Score=71.72 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611 103 TKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL 178 (383)
Q Consensus 103 ~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~ 178 (383)
+..+..-...|+..+..+.+|..+++++|++..+++...+|++++++++++++|++++.++.|.++..+|+.+...
T Consensus 212 ~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 212 LPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3434333445556667779999999999999999999999999999999999999999999999988888666643
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.06 E-value=6.8e-05 Score=74.06 Aligned_cols=76 Identities=25% Similarity=0.320 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCC
Q 043611 104 KVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGH 182 (383)
Q Consensus 104 ~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~ 182 (383)
++|.+... +++.++.+-..++.+.|++..+=+.+.+++++++++.+++|||++++.+.|+++..+|++++......
T Consensus 51 ~~W~~G~~---~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~ 126 (300)
T PF05653_consen 51 PLWWIGLL---LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPK 126 (300)
T ss_pred HHHHHHHH---HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCC
Confidence 34444432 34455667779999999999999999999999999999999999999999999999999888765443
No 44
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.99 E-value=0.00018 Score=69.98 Aligned_cols=109 Identities=8% Similarity=-0.068 Sum_probs=75.5
Q ss_pred chhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH-HHHHHHHHHHhhcCCChhHHHHHHhhh
Q 043611 64 SRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL-LGLNNLLFSWGNSYLPVSTSALLLSSQ 142 (383)
Q Consensus 64 ~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll-~a~~~~Ly~~gl~ylp~St~sll~ssq 142 (383)
+.+..++....|-++++ ++... .... ... ..+.+.+..-...|++ ....+.+|.++++++|++..+++...+
T Consensus 177 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~---~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~ 249 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLL-IASLL--SGER-LTA---LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVN 249 (292)
T ss_pred chHHHHHHHHHHHHHHH-HHHHH--cCCc-ccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 35566665566766655 33322 1110 000 0122333333334443 345568999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611 143 LLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG 179 (383)
Q Consensus 143 l~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~ 179 (383)
|++++++++++++|++++.++.|.++...|..++...
T Consensus 250 Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 250 PVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888887776543
No 45
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.95 E-value=0.00014 Score=71.16 Aligned_cols=132 Identities=19% Similarity=0.265 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH
Q 043611 36 LVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL 115 (383)
Q Consensus 36 ~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 115 (383)
.++..++-.++++...+..|.. + -+++-.++.|..|..+--..++.. | + +.+| +.++........|++
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~-~---~~~~~~~~~~~~g~~~~~~~~~~~-~-~---~~~~---~~~~~~~~~~~~Gi~ 220 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAF-G---VDGLSVLLPQAIGMVIGGIIFNLG-H-I---LAKP---LKKYAILLNILPGLM 220 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-C---CCcceehhHHHHHHHHHHHHHHHH-H-h---cccc---hHHHHHHHHHHHHHH
Confidence 3444444455667777777753 3 445667777887666655433333 3 1 1122 234444456669988
Q ss_pred HHHHHHHHHHhhc-CCChhHHHHHHhhhHHHHHHHHHHHhccccchhHH----HHHHHHHHHHHHhccc
Q 043611 116 LGLNNLLFSWGNS-YLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNL----NCVILLTLSSVLLALG 179 (383)
Q Consensus 116 ~a~~~~Ly~~gl~-ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i----~svvLltiG~vll~~~ 179 (383)
.+..+.+|..|.+ ++++++++++.+..++.+++++++++||+.+++++ .|.++...|+.+++..
T Consensus 221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 8999999999999 99999999999999999999999999999999999 9999888888777653
No 46
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.91 E-value=0.0016 Score=63.41 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHH-HHHhhhHHHHHHHHHHHhccccchhHHH----HHHHHHHHHHHh
Q 043611 102 TTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSA-LLLSSQLLFNLVFSVIIVKQKITFSNLN----CVILLTLSSVLL 176 (383)
Q Consensus 102 ~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~s-ll~ssql~Ftaifs~~ilkeK~t~~~i~----svvLltiG~vll 176 (383)
+++.+..+++.|++-+..|...+.+.+++.+|..- +-...|++.|++.++++++|--+..++. +++++.+|+.+-
T Consensus 41 ~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lt 120 (269)
T PF06800_consen 41 SGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILT 120 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999997777888776555432 2237899999999999999988776654 788888887777
Q ss_pred cccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 043611 177 ALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEM 216 (383)
Q Consensus 177 ~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~ 216 (383)
...+..++ +..++++..-|+...+.+++.|..|.++-|.
T Consensus 121 s~~~~~~~-~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 121 SYQDKKSD-KSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred cccccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 77665432 1122344566999999999999999888766
No 47
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.84 E-value=0.00045 Score=67.44 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611 107 TLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG 179 (383)
Q Consensus 107 ~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~ 179 (383)
......|+..+.-+.+|..+++++|++..+++...+|+++.++++++++|++++.++.|+++..+|+.++..+
T Consensus 214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555667799999999999999999999999999999999999999999999999887787776543
No 48
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.82 E-value=5.2e-05 Score=73.37 Aligned_cols=71 Identities=24% Similarity=0.448 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 043611 105 VLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVL 175 (383)
Q Consensus 105 ~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vl 175 (383)
.+..-...++..+..+.+|..+++++|++..+.+...+|+++.++++++++|++++.++.|.++..+|+.+
T Consensus 210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 33333444555666778999999999999999999999999999999999999999999999988888765
No 49
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.69 E-value=0.00075 Score=58.70 Aligned_cols=131 Identities=22% Similarity=0.141 Sum_probs=89.7
Q ss_pred HhhhhhHhhhhHhhcC-----CCcch-hHHHHHHHhhhhhhhhhhhccccccccCCCC-CCC-C--cchHHHHHHHHHHH
Q 043611 45 VGSVSASLLSKYYFNH-----KGSSR-WVSTWVQCAGFPLLLPPIFLPYYLFKCTERR-PFS-H--FTTKVLTLSILVGL 114 (383)
Q Consensus 45 ~g~~~~~Ll~r~y~~~-----gg~~~-w~~t~vq~~g~plll~~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~Gl 114 (383)
+.++....+.|..+.+ .+.++ =+.......++++++++.++....+..+... ... . ..++.+..-+..|+
T Consensus 10 ~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (153)
T PF03151_consen 10 LFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGL 89 (153)
T ss_pred HHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHH
Confidence 3456666666766666 23333 3455555568888886555542111000000 000 0 13344555556666
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 043611 115 LLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVL 175 (383)
Q Consensus 115 l~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vl 175 (383)
+--..|+....-++++.+-+++++...+-+++.+++.++++|++|..++.|+++.++|..+
T Consensus 90 ~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 90 LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 6667777777999999999999999999999999999999999999999999998888653
No 50
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.57 E-value=0.00068 Score=66.12 Aligned_cols=63 Identities=10% Similarity=-0.021 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611 116 LGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL 178 (383)
Q Consensus 116 ~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~ 178 (383)
+..-|.++..+++++++++++++...++++++++++++++|++|..++.|.++...|..+...
T Consensus 231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 334456777899999999999999999999999999999999999999999988888776654
No 51
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.51 E-value=0.0029 Score=59.99 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=116.7
Q ss_pred HHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHH
Q 043611 124 SWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGA 203 (383)
Q Consensus 124 ~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~A 203 (383)
+=+++|+|++.|++..-...+..|..-.++.|.|.+.....+-+++.+++++-.++|.... ....+..-.|.+....-
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~--~~~~~~lN~GY~Wm~~N 163 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQAS--AFKAQILNPGYLWMFTN 163 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHH--HHHhcccCCceEEEehh
Confidence 3678899999999999999999999999999999999999999999998877766653111 00001112344444444
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHHHHHHHHHHH
Q 043611 204 GLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTIIGNVVTWQL 283 (383)
Q Consensus 204 a~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l~~~av~wq~ 283 (383)
.+..+.+...+++..|--. + --.|-..|-.+.+..+++.--+...||+. ..-+.. |+ ..++.|..
T Consensus 164 clssaafVL~mrkri~ltN-f-~d~dtmfYnNllslPiL~~~s~~~edws~-~n~ann-l~-----------~d~l~am~ 228 (309)
T COG5070 164 CLSSAAFVLIMRKRIKLTN-F-KDFDTMFYNNLLSLPILLSFSFLFEDWSP-GNLANN-LS-----------VDSLMAMF 228 (309)
T ss_pred hHhHHHHHHHHHHhhcccc-c-chhhHHHHhhhHHHHHHHHHHHHhccCCc-chhhcC-CC-----------hHHHHHHH
Confidence 4555555444554443321 0 11222233444444444422233455642 121222 21 11222322
Q ss_pred -HHhhhccceee-------cccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611 284 -CFMGTAGMVFL-------TSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV 342 (383)
Q Consensus 284 -~~vg~vGlv~~-------~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi 342 (383)
-.+..+|.-|+ +||-+-+.+..+-.....+.+.++|||+.+..++.+..+-...-..|-
T Consensus 229 ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa 295 (309)
T COG5070 229 ISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred HHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 22334444332 244444555555444556788999999999999988776654333333
No 52
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.46 E-value=0.0008 Score=55.52 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhh--HHHHHHHHHHH
Q 043611 206 LFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCL--TIIGNVVTWQL 283 (383)
Q Consensus 206 l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l--~l~~~av~wq~ 283 (383)
+||.+....++..++. .+.++..+..+.+.+ +.+-+...+..+. .. ++...+.+.. ....+.+.+.+
T Consensus 2 ~~a~~~~~~k~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKKI----SPLSITFWRFLIAGI-LLILLLILGRKPF-----KN-LSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred eeeeHHHHHHHHhccC----CHHHHHHHHHHHHHH-HHHHHHhhccccc-----cC-CChhhhhhhhHhhccceehHHHH
Confidence 4677777788888875 466777777777775 4433322232110 00 1111111111 12222333333
Q ss_pred HHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 284 CFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 284 ~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
...+. .+.+.-..+.+..+.++++.+++++++||+++..+++|.++++.|.....|
T Consensus 71 ~~~a~----~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~~ 126 (126)
T PF00892_consen 71 YFYAL----KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIST 126 (126)
T ss_pred HHHHH----HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 22221 112333344455565666899999999999999999999999998877543
No 53
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.40 E-value=0.0019 Score=56.08 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-c-chhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhHH
Q 043611 197 FFCTVGAGLLFALYLPVMEMIYKKVY-C-YSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLTI 274 (383)
Q Consensus 197 ~~l~L~Aa~l~gl~~~l~q~~~kk~~-~-~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~l 274 (383)
.+.++.+|+++|+--..++...|.+. . -..+ -.++...++..-++..|.|+ .+.|.. .+...|+++
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~I------RtiVi~~~l~~v~~~~g~~~-~~~~~~-----~k~~lflil 72 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTI------RTIVILIFLLIVLLVTGNWQ-AGGEIG-----PKSWLFLIL 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHH------HHHHHHHHHHHHHHhcCcee-cccccC-----cceehhhhH
Confidence 46788899999998777888888774 1 1112 22333444444455677764 333332 223334443
Q ss_pred H--HHHHHHHHHHhhh-ccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611 275 I--GNVVTWQLCFMGT-AGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS 340 (383)
Q Consensus 275 ~--~~av~wq~~~vg~-vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~ 340 (383)
. .+..+|++++... .|-...+ -=++-..+.++.+++++++||++|..+.+|.+++.+|...
T Consensus 73 SGla~glswl~Yf~ALk~G~as~V-----vPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 73 SGLAGGLSWLLYFRALKKGKASRV-----VPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceE-----EEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 3 3578998877663 1111111 0124455667899999999999999999999999998653
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.39 E-value=0.0055 Score=59.87 Aligned_cols=78 Identities=8% Similarity=0.015 Sum_probs=62.7
Q ss_pred chHHHHHHHHHH-HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611 102 TTKVLTLSILVG-LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG 179 (383)
Q Consensus 102 ~~~~~~~~~~~G-ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~ 179 (383)
++..+..-+.+| +..+....+|..++++++++..+++...+|++++++++++++|+++..++.|.++..+|+.+...+
T Consensus 210 ~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 210 DMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444 333355589999999999999999999999999999999999999999999999888887665544
No 55
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.26 E-value=0.079 Score=53.53 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=85.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHHHhccc-------cchhHHHHHHHHHHH
Q 043611 101 FTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVIIVKQK-------ITFSNLNCVILLTLS 172 (383)
Q Consensus 101 ~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~ilkeK-------~t~~~i~svvLltiG 172 (383)
.+++.+....+.|++-+..|.++..+++|+.+|.. .+-...|++++.++..++.+|= -...-+.|+++..+|
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999988865 4556899999999999998752 234567888888999
Q ss_pred HHHhcc----cCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 043611 173 SVLLAL----GSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYL 211 (383)
Q Consensus 173 ~vll~~----~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~ 211 (383)
+++.+. .+..++.++.++.+.--|++..+.+.+.|+.|.
T Consensus 148 i~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 148 VAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred HHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 888876 332111111233455679999999999999987
No 56
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.24 E-value=0.0029 Score=54.49 Aligned_cols=70 Identities=20% Similarity=0.400 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC
Q 043611 111 LVGLLLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS 180 (383)
Q Consensus 111 ~~Gll~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~ 180 (383)
..-+.++...+++..+++++|.|++ ++......+.+++.++++++|++|+.++.++.+..+|++++-..+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3445666777888899999999985 455679999999999999999999999999999999987775543
No 57
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.23 E-value=0.0028 Score=55.20 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHH--HhccccchhHHHHHHHHHHHHHHhccc
Q 043611 115 LLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVI--IVKQKITFSNLNCVILLTLSSVLLALG 179 (383)
Q Consensus 115 l~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~--ilkeK~t~~~i~svvLltiG~vll~~~ 179 (383)
.++....+|.++++.+|+|.+.-+.+...+++++.++. +++|++|+.++.|+++..+|+.++..+
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 34455688999999999999998888888889888885 899999999999999999998887643
No 58
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.22 E-value=0.0086 Score=56.91 Aligned_cols=134 Identities=13% Similarity=0.167 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcC---Ccch--h
Q 043611 196 GFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDK---GPVV--Y 270 (383)
Q Consensus 196 G~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~---g~~~--y 270 (383)
|.++.+.|+++||...+..+.. ..+ .+.|+..+=++++..++..-+...++.++. .++ ++. .++. .
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~-~~~----~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~ 73 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLL-KPL----PATDILGHRMIWSFPFMLLSVTLFRQWAAL---IER-LKRIQKRPLILSL 73 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-ccC----CHHHHHHHHHHHHHHHHHHHHHHHcchHHH---HHH-HhCcccchHHHHH
Confidence 8899999999999988777763 333 577777777777776655444333432211 011 211 1111 0
Q ss_pred hhHHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611 271 CLTIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV 342 (383)
Q Consensus 271 ~l~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi 342 (383)
.+.-+.....|..++.+. .+.+...++++....|..+.+++.++++|+++..+++|.++.+.|+....
T Consensus 74 ~~~g~~~~~~~~~~~~a~----~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 74 LLCGLLIGFNWWLFIWAV----NNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHHH----HcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 111111223333333332 12333345555555555589999999999999999999999999987654
No 59
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.21 E-value=0.0025 Score=54.02 Aligned_cols=66 Identities=17% Similarity=0.042 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhH-HHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Q 043611 111 LVGLLLGLNNLLFSWGNSYLPVST-SALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLL 176 (383)
Q Consensus 111 ~~Gll~a~~~~Ly~~gl~ylp~St-~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll 176 (383)
..-+.++...++.+.+++++|.++ |++-.....+.+++.++++.||++++.++.++.+...|++.+
T Consensus 40 ~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 40 LSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 334445566778889999999997 577778999999999999999999999999999999887765
No 60
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.11 E-value=0.02 Score=53.95 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHHH-HHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611 102 TTKVLTLSILVGLLLG-LNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG 179 (383)
Q Consensus 102 ~~~~~~~~~~~Gll~a-~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~ 179 (383)
..+.+......|++.+ ..+.+|..+++..|++..+.+..+++++++++++++++|+++..++.|+++...|..+....
T Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666676655 36688889999999999999999999999999999999999999999998788776666543
No 61
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0036 Score=52.71 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhcCCChhH-HHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611 115 LLGLNNLLFSWGNSYLPVST-SALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL 178 (383)
Q Consensus 115 l~a~~~~Ly~~gl~ylp~St-~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~ 178 (383)
.++....+.+.+++++|.++ |++--....+-+++.+++++||++++.++.++.++..|++.+-.
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 34466678889999999997 68888999999999999999999999999999999999776643
No 62
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.02 E-value=0.0056 Score=51.50 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhcCCChhH-HHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 043611 114 LLLGLNNLLFSWGNSYLPVST-SALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLA 177 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St-~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~ 177 (383)
+.++...++.+.+++.+|.++ |++-.....+.+++.++++.|||+++.++.++.+...|++.+-
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 344466677789999999997 6777789999999999999999999999999999999977763
No 63
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.86 E-value=0.0095 Score=50.50 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611 115 LLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG 179 (383)
Q Consensus 115 l~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~ 179 (383)
.++....+++.+++.+|.|++ ++-.....+.+++.+++++||++++.++.++.+..+|++++-+.
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344566777899999999975 45566899999999999999999999999999999998887543
No 64
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.63 E-value=0.043 Score=55.18 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=49.5
Q ss_pred HhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 043611 125 WGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLA 177 (383)
Q Consensus 125 ~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~ 177 (383)
++++.+++.++++....+++++.++++++++|++|+.++.|.++...|..+..
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999998888876543
No 65
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.55 E-value=0.039 Score=55.71 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHH---HH-hhhHHHHHHHHHHHhccccc------hhHHHHHHHHHHH
Q 043611 103 TKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSAL---LL-SSQLLFNLVFSVIIVKQKIT------FSNLNCVILLTLS 172 (383)
Q Consensus 103 ~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sl---l~-ssql~Ftaifs~~ilkeK~t------~~~i~svvLltiG 172 (383)
.|..+.+++.|++-+.+|..|.+|-..++++...+ +. |+.+++..+-+. ++||+=+ +..+.++++..+|
T Consensus 257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g 335 (345)
T PRK13499 257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA 335 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence 57788889999999999999999988875554443 44 888899999888 5999877 7778899999999
Q ss_pred HHHhcccC
Q 043611 173 SVLLALGS 180 (383)
Q Consensus 173 ~vll~~~~ 180 (383)
+++++.+.
T Consensus 336 ~~lig~~~ 343 (345)
T PRK13499 336 ANIVGLGN 343 (345)
T ss_pred HHHHhhcc
Confidence 88888763
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.0011 Score=65.54 Aligned_cols=70 Identities=11% Similarity=0.214 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCC
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHD 183 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~ 183 (383)
++++..+..-+-++.|-|++..+=+.+.+.+++++++.+++|||++..-..|.++..+|.+++..+...+
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 4455666666688888999999999999999999999999999999999999999999999999886543
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.36 E-value=0.013 Score=47.91 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHHHhccccchhHHHHHHH
Q 043611 115 LLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVIIVKQKITFSNLNCVIL 168 (383)
Q Consensus 115 l~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~ilkeK~t~~~i~svvL 168 (383)
.++...+++..+++++|.|+. .+......+.+++.+.++.+|++|+.++.++.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 556777899999999999987 667789999999999999999999999999975
No 68
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.23 E-value=0.059 Score=45.07 Aligned_cols=45 Identities=4% Similarity=0.082 Sum_probs=37.7
Q ss_pred HHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcc
Q 043611 302 ISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMY 346 (383)
Q Consensus 302 vv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~ 346 (383)
.+..+-+.++.+++.++++|+++..+++|..+++.|+..-.+++.
T Consensus 65 ~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 65 AIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 344454555799999999999999999999999999999888654
No 69
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.16 E-value=0.047 Score=53.52 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCC--C---CCcchHHHHHH
Q 043611 36 LVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRP--F---SHFTTKVLTLS 109 (383)
Q Consensus 36 ~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~ 109 (383)
.++.+++=++.++......+..+++.+.++|=.-+.... |.|+++++....+ .+.-.+. + .+.....++..
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~---~~~~~~~~~f~~~~p~~~~~l~~~ 231 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP---TGEFRSAIRFISAHPSVLLYLLLF 231 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH---hhHhhHHHHHHHHhHHHHHHHHHH
Confidence 444444433444555556666666666666544444444 7776665444421 1111111 1 01122334444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcc
Q 043611 110 ILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLAL 178 (383)
Q Consensus 110 ~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~ 178 (383)
..+|.+ +++..+ .-.+...+-+.+++..+.-+++.++|+.+.++++++.+|.|+++.+.|..+-..
T Consensus 232 s~~~~~--g~~~i~-~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 232 SLTGAL--GQFFIF-YLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHH--HHHHHH-HHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 445544 444555 446778888999999999999999999999999999999999988888665443
No 70
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.04 E-value=0.14 Score=50.40 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhh-
Q 043611 194 FIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCL- 272 (383)
Q Consensus 194 ~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l- 272 (383)
.-|+++.++|.++||+.-...+. . ......|+...=-+++.++..+-+...+.+++... . .++.+.....
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kl-l----~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~---~~~p~~~~~~~ 76 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKL-L----EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-L---LKQPKTLLMLA 76 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-H----ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-H---HhCcHHHHHHH
Confidence 35999999999999984322222 2 23357788888888888888877777777765422 1 3333322111
Q ss_pred -HHHHHHHHHHHHHhhh-ccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 273 -TIIGNVVTWQLCFMGT-AGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 273 -~l~~~av~wq~~~vg~-vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
+-.-...+|.++.-.+ .|+ .+.++.=..+-|.+..+++.++++|+++..|.++..++..|+..-..
T Consensus 77 l~a~li~~nW~lfiWAvn~g~-----~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 77 LTALLIGLNWWLFIWAVNNGH-----VLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHHHHHHhheecCCCc-----hhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 2222344665533322 122 22223333344445699999999999999999999999999887644
No 71
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.01 E-value=0.088 Score=51.41 Aligned_cols=92 Identities=24% Similarity=0.264 Sum_probs=69.3
Q ss_pred cchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhh
Q 043611 63 SSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQ 142 (383)
Q Consensus 63 ~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssq 142 (383)
-++|-.-+-|..|.-+-.+.+... . +++ ...|...-....|++.+..|+.|..+.+..-++++-.+.|+.
T Consensus 162 ~~~~~~~lPqaiGm~i~a~i~~~~---~----~~~---~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~ 231 (269)
T PF06800_consen 162 VSGWSAFLPQAIGMLIGAFIFNLF---S----KKP---FFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLG 231 (269)
T ss_pred CChhHhHHHHHHHHHHHHHHHhhc---c----ccc---ccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHH
Confidence 345657778888886655322222 1 111 111223445778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchhHHH
Q 043611 143 LLFNLVFSVIIVKQKITFSNLN 164 (383)
Q Consensus 143 l~Ftaifs~~ilkeK~t~~~i~ 164 (383)
++.+.+.+.+++|||=+++++.
T Consensus 232 vvIStlgGI~il~E~Kt~ke~~ 253 (269)
T PF06800_consen 232 VVISTLGGIFILKEKKTKKEMI 253 (269)
T ss_pred HHHHHhhhheEEEecCchhhHH
Confidence 9999999999999999988664
No 72
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.81 E-value=0.043 Score=53.01 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=61.2
Q ss_pred cchHHHHHHHHHHHHHHHHH-HHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q 043611 101 FTTKVLTLSILVGLLLGLNN-LLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSV 174 (383)
Q Consensus 101 ~~~~~~~~~~~~Gll~a~~~-~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~v 174 (383)
+.|.++......|++-..-- .|=+.++..+|.++++++.|.+|++.++-++++++|.+|..||.+++....+++
T Consensus 204 ~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 204 FSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred cChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 55667777777776644433 566789999999999999999999999999999999999999999986665544
No 73
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.63 E-value=0.34 Score=42.56 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHH
Q 043611 35 LLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVG 113 (383)
Q Consensus 35 ~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 113 (383)
+.++.-.++.++...+.-|.+.. .++|.++++-.. |+-++++.+++.+ ++ +.+..+ ..|++......+|
T Consensus 5 la~~aG~~i~~q~~~N~~L~~~~-----gs~~~as~i~~~~G~i~~~i~~~~~~---~~-~~~~~~-~~p~w~~lGG~lG 74 (138)
T PF04657_consen 5 LALLAGALIALQAAFNGQLGKAL-----GSPLVASFISFGVGFILLLIILLITG---RP-SLASLS-SVPWWAYLGGLLG 74 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----CccHHHHHHHHHHHHHHHHHHHHHhc---cc-ccchhc-cCChHHhccHHHH
Confidence 33444455666777776666652 368888888777 8888875555442 11 111111 2345555566677
Q ss_pred HHHHHHHHHHHHhhcCCChhHH-HHHHhhhHHHHHHHHHH----HhccccchhHHHHHHHHHHHHH
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTS-ALLLSSQLLFNLVFSVI----IVKQKITFSNLNCVILLTLSSV 174 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~-sll~ssql~Ftaifs~~----ilkeK~t~~~i~svvLltiG~v 174 (383)
..+= .+..+....+.++.. .+....|++..++...| .-|+|+++.++.|++++.+|+.
T Consensus 75 ~~~V---~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 75 VFFV---LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 5522 223355566666554 55669999999999998 7899999999999999998865
No 74
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.39 E-value=0.036 Score=51.71 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHH
Q 043611 113 GLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLS 172 (383)
Q Consensus 113 Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG 172 (383)
.+..+....+-.+-++|.+..+.++..+...++++++|+++++++++..++.|+.+...|
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~ 218 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLA 218 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHee
Confidence 344555556677889999999999999999999999999999999999999999876665
No 75
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=93.90 E-value=0.19 Score=42.43 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=35.6
Q ss_pred ccchhhHHH---hhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611 296 SSLTGGISM---TAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS 340 (383)
Q Consensus 296 Ssl~asvv~---~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~ 340 (383)
+..+.|+.. .+....+.++++++|||+++..|++|..+++.|+..
T Consensus 59 ~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~ 106 (111)
T PRK15051 59 QNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI 106 (111)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 445556542 245555789999999999999999999999999765
No 76
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=93.45 E-value=0.24 Score=41.96 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=38.0
Q ss_pred ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611 296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY 341 (383)
Q Consensus 296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y 341 (383)
.+++-++... ++...+.+.++++|||++|+.|++|+.+++.|+...
T Consensus 52 ~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l 101 (110)
T PRK09541 52 AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI 101 (110)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 5566677644 456667899999999999999999999999988775
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=93.30 E-value=0.58 Score=39.51 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=37.7
Q ss_pred ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611 296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV 342 (383)
Q Consensus 296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi 342 (383)
.+++.++... ++...+.+.++++|||+++..|++|+.+++.|+...-
T Consensus 52 k~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 52 KTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 3445566533 6666788999999999999999999999999987643
No 78
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=93.27 E-value=0.2 Score=43.13 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=36.1
Q ss_pred ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611 296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY 341 (383)
Q Consensus 296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y 341 (383)
..++.++... ++...+.+.++++|||++|..|++|+.+++.|+..-
T Consensus 52 ~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 52 KKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444465533 455567889999999999999999999999988765
No 79
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=92.91 E-value=1.6 Score=43.93 Aligned_cols=142 Identities=14% Similarity=0.081 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHH
Q 043611 34 VLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVG 113 (383)
Q Consensus 34 ~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 113 (383)
++.=+.++.=.+-++.+..+.++...+. ++.=+-.++-.-|+.+..+.+.+. .+.. -... .++.+.....+...
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~il---e~~~-i~~~-~w~~~~~~~~v~~~ 240 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAIL---ERSG-IESI-HWTSQVIGLLVGYA 240 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHhe---ehhh-hhcc-CCChhhHHHHHHHH
Confidence 3333444443444455555555444443 333334555666777776544443 1211 1122 24445455445555
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCC
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG 181 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~ 181 (383)
+.+.....+....+++.++...++=..+.-++++++..++.++|+++.-+.|.++..+|.++....+.
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 55555556667778888887888888888999999999999999999999999999999887776653
No 80
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=92.04 E-value=0.48 Score=40.14 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=36.7
Q ss_pred ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHH
Q 043611 296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCS 340 (383)
Q Consensus 296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~ 340 (383)
..++.++... ++...+.+.++++|||+++..|++|+.+++.|+..
T Consensus 57 ~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 57 KGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4556677633 55666789999999999999999999999998865
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=91.77 E-value=0.52 Score=46.69 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 306 AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 306 l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
+......+++-.++||+++...++|.++++.|......
T Consensus 85 ~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 85 LSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred hhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 44556789999999999999999999999999877643
No 82
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.66 E-value=1.7 Score=43.77 Aligned_cols=145 Identities=19% Similarity=0.241 Sum_probs=92.9
Q ss_pred chhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhH-HHHHHhhh
Q 043611 64 SRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVST-SALLLSSQ 142 (383)
Q Consensus 64 ~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St-~sll~ssq 142 (383)
=.|=+.|+-..-+.-++.|.... ++.-..-.+-....+...+...++.|++-|..++.|-.+++|+-.|. .++...+-
T Consensus 32 WsWEs~Wlv~gi~swli~P~~~a-~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~ 110 (344)
T PF06379_consen 32 WSWESYWLVQGIFSWLIVPWLWA-LLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLC 110 (344)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHH
Confidence 35888888877777777777654 22111100001112224566778899999999999999999988764 45555555
Q ss_pred HHHHHHHHHHHhc-------cccchhHHHHHHHHHHHHHHhcccC---CCCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 043611 143 LLFNLVFSVIIVK-------QKITFSNLNCVILLTLSSVLLALGS---GHDKSPDLPKSKYFIGFFCTVGAGLLFAL 209 (383)
Q Consensus 143 l~Ftaifs~~ilk-------eK~t~~~i~svvLltiG~vll~~~~---~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl 209 (383)
.+|-.+.--++.+ ++-....+.++++..+|+++.+... +.+.+.+.++.+.--|+++++.+.++++.
T Consensus 111 ~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~ 187 (344)
T PF06379_consen 111 AVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSAC 187 (344)
T ss_pred HHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 5555555444432 3335678899999999988887433 11112333444456799999988887776
No 83
>PRK11431 multidrug efflux system protein; Provisional
Probab=90.97 E-value=0.78 Score=38.56 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=36.9
Q ss_pred ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611 296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSY 341 (383)
Q Consensus 296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~y 341 (383)
..++.++... ++...+.+.++++|||++|..|++|+.+++.|+..-
T Consensus 51 ~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 51 KSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred hhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 3445566533 566667899999999999999999999999988764
No 84
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=90.92 E-value=5 Score=38.48 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHH-hhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHH
Q 043611 34 VLLVTNYLCLFV-GSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSIL 111 (383)
Q Consensus 34 ~~~~~~~~~l~~-g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (383)
++.++.+++-.. .+.++....|..=+ ++.+.|++...... |.++.++..++.. ..+-+++.-+..+++..+.
T Consensus 113 ~~G~~~vl~~~~~S~~agVy~E~~lK~-~~~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~~~~g~f~G~~~~~~~---- 186 (244)
T PF04142_consen 113 LLGLLAVLAAAFLSGFAGVYFEKLLKR-SNVSLWIQNMQLYLFGILFNLLALLLSD-GSAISESGFFHGYSWWVWI---- 186 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCchhhcchHHHH----
Confidence 444444443333 33334444444333 44888999988776 7887765433321 1111111223344443221
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHH
Q 043611 112 VGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVI 167 (383)
Q Consensus 112 ~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svv 167 (383)
.=+..+...++-..-++|.+.=+=..-.+...+.++++++++.+.+++..-+.|..
T Consensus 187 ~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 187 VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 11233333455556678888877888889999999999999999999988777764
No 85
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=90.85 E-value=0.45 Score=40.63 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCCChhHHHHH-HhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 043611 119 NNLLFSWGNSYLPVSTSALL-LSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVL 175 (383)
Q Consensus 119 ~~~Ly~~gl~ylp~St~sll-~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vl 175 (383)
...+|.+.+...|.|...-+ ++..-+||++.++++-+|..+++.+.|+.+...|+.+
T Consensus 54 GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 54 GSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 33778788999999988877 5999999999999999999999999999988887654
No 86
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=90.07 E-value=12 Score=32.68 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcCCcchhhhH-H
Q 043611 196 GFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDKGPVVYCLT-I 274 (383)
Q Consensus 196 G~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~g~~~y~l~-l 274 (383)
..++.+.+.++-+++..+.-+..++.. .+++-..+...++++.+.+-.+..++. + .+. +.+.+|.+++. +
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~g---s~~~as~i~~~~G~i~~~i~~~~~~~~-~----~~~-~~~~p~w~~lGG~ 72 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALG---SPLVASFISFGVGFILLLIILLITGRP-S----LAS-LSSVPWWAYLGGL 72 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHHhccc-c----cch-hccCChHHhccHH
Confidence 356778888888888888888888873 344444555567776666655555542 2 222 44555555542 2
Q ss_pred HHHHHHHH-HHHhhhccceeecccchhhHHHhhHHHHH--HHHHHHHhC--------CcchhhhHHHHHHHHHHHH
Q 043611 275 IGNVVTWQ-LCFMGTAGMVFLTSSLTGGISMTAILAMN--VIAGVVVYG--------DSFGGVKAVSTVLCAWGFC 339 (383)
Q Consensus 275 ~~~av~wq-~~~vg~vGlv~~~Ssl~asvv~~l~~pv~--~ilAvi~fg--------E~~~~~kiig~~L~l~G~~ 339 (383)
.+..+... ...+.-. +...+....++ .+.+.++.| ++++..|++|..+.+.|..
T Consensus 73 lG~~~V~~~~~~vp~l-----------G~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 73 LGVFFVLSNIILVPRL-----------GAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 22221111 1112211 22222222332 455555444 8999999999999998864
No 87
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=90.04 E-value=1.6 Score=37.98 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHHHHHH--HHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611 310 MNVIAGV--VVYGDSFGGVKAVSTVLCAWGFCSYV 342 (383)
Q Consensus 310 v~~ilAv--i~fgE~~~~~kiig~~L~l~G~~~yi 342 (383)
++.++++ ++|||+++..|++|.++++.|+....
T Consensus 87 ~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 87 LVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3455555 38999999999999999998877743
No 88
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=84.78 E-value=19 Score=36.55 Aligned_cols=148 Identities=19% Similarity=0.144 Sum_probs=91.0
Q ss_pred ccchHHHHHHHHHHHHHhhh-----hhHhhhhHhhcCCCcchhHHHH-----HHHhhhhhhhhhhhccccccccCCC---
Q 043611 29 SKSYLVLLVTNYLCLFVGSV-----SASLLSKYYFNHKGSSRWVSTW-----VQCAGFPLLLPPIFLPYYLFKCTER--- 95 (383)
Q Consensus 29 ~~~~~~~~~~~~~~l~~g~~-----~~~Ll~r~y~~~gg~~~w~~t~-----vq~~g~plll~~~~~~~~~~~~~~~--- 95 (383)
+.++=+++.+.+-.|-.+.. ++|+- .--.+.|..++.+++ +..-||-.=+ .+|+.+ ..++++.
T Consensus 170 n~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~--~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~-~yc~~~-l~~~k~~s~~ 245 (344)
T PF06379_consen 170 NFKKGLIIAVLSGVMSACFNFGLDAGKPIH--EAAVAAGVNPLYANLPVYVVVLWGGFITNL-IYCLIL-LAKNKNWSWK 245 (344)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHcCCcHH--HHHHHcCCCcHHHhCchhhhhhhhHHHHHH-HHHHHH-HhhcCCCccc
Confidence 34444777777766655543 23431 122334667776665 2333554443 455442 2222221
Q ss_pred CCCC---CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCC----hhHHHHHHhhhHHHHHHHHHHHh-----ccccchhHH
Q 043611 96 RPFS---HFTTKVLTLSILVGLLLGLNNLLFSWGNSYLP----VSTSALLLSSQLLFNLVFSVIIV-----KQKITFSNL 163 (383)
Q Consensus 96 ~~~~---~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp----~St~sll~ssql~Ftaifs~~il-----keK~t~~~i 163 (383)
..+. +...+..+.+++-|.+==.++..|.+|=..++ .+...+..+..++|.-+-.+.+- .+|--+.-+
T Consensus 246 ~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~lkEWKg~s~kt~~vl~ 325 (344)
T PF06379_consen 246 GDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLILKEWKGASKKTIRVLV 325 (344)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHH
Confidence 1221 12235778888899888888899999888776 66788888888888888777553 235556667
Q ss_pred HHHHHHHHHHHHhcccC
Q 043611 164 NCVILLTLSSVLLALGS 180 (383)
Q Consensus 164 ~svvLltiG~vll~~~~ 180 (383)
.++.++.+++++++.+.
T Consensus 326 ~G~~vlI~s~~ivG~G~ 342 (344)
T PF06379_consen 326 LGIAVLILSVVIVGYGM 342 (344)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 88888888888887653
No 89
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=78.78 E-value=16 Score=37.63 Aligned_cols=143 Identities=14% Similarity=0.066 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHH-------HHHHhhhhhhhhhhhccccccccCCCCCCCCcchH
Q 043611 32 YLVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVST-------WVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTK 104 (383)
Q Consensus 32 ~~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t-------~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~ 104 (383)
+.++.-++.++=++.++.=.-+-|..-+..|.+.=++= +-...+||.+++.-++ ...+-.-| +....-
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~----~~e~F~lP-~~~q~~ 318 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF----GEERFELP-SSTQFS 318 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh----ccCcccCC-CCceeE
Confidence 34666677777677777777788887777765532232 2233356555432222 11111111 111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCC
Q 043611 105 VLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG 181 (383)
Q Consensus 105 ~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~ 181 (383)
.+....++|-+ ...++|..|.-.+++-+.++=.+.|.+..+++-.++-++++++..++|-+..++|-+++...+.
T Consensus 319 ~vv~~~ligtv--vSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 319 LVVFNNLIGTV--VSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eeeHhhHHHHH--HHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 34444566655 5569999999998988999999999999999999999999999999999988888776665543
No 90
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=77.88 E-value=3.2 Score=33.72 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=18.4
Q ss_pred ccchhhHHHh----hHHHHHHHHHHHHhCCcchhhhHHHHHHH
Q 043611 296 SSLTGGISMT----AILAMNVIAGVVVYGDSFGGVKAVSTVLC 334 (383)
Q Consensus 296 Ssl~asvv~~----l~~pv~~ilAvi~fgE~~~~~kiig~~L~ 334 (383)
..++.++... ++...+.+.++++|||++|..|++|+.++
T Consensus 51 ~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 51 KKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3445566522 55666789999999999999999999875
No 91
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=70.25 E-value=0.62 Score=45.65 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=40.5
Q ss_pred HHhhHHHH-HHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhhhhH
Q 043611 303 SMTAILAM-NVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQ 352 (383)
Q Consensus 303 v~~l~~pv-~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~~k~ 352 (383)
+.+...|+ +.++|+++++|+++.....|..+.+.|+...+.-++.-...+
T Consensus 128 vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t 178 (346)
T KOG4510|consen 128 VITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTT 178 (346)
T ss_pred EEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCc
Confidence 33444455 799999999999999999999999999998887777655543
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=68.80 E-value=3.2 Score=40.31 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=73.6
Q ss_pred hHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHH
Q 043611 66 WVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLF 145 (383)
Q Consensus 66 w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~F 145 (383)
|-.=+=|..|+-++.+.+-.. + .+ + ...|....-...|++-|..|+.+.++-+..-++|.=-+.|...+.
T Consensus 179 ~saiLPqAiGMv~~ali~~~~---~-~~--~----~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgVii 248 (288)
T COG4975 179 LSAILPQAIGMVIGALILGFF---K-ME--K----RFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVII 248 (288)
T ss_pred hhhhhHHHHHHHHHHHHHhhc---c-cc--c----chHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeee
Confidence 335666777887776322222 1 11 1 112445566789999999998888888888888888888999999
Q ss_pred HHHHHHHHhccccchhHH----HHHHHHHHHHHHhcc
Q 043611 146 NLVFSVIIVKQKITFSNL----NCVILLTLSSVLLAL 178 (383)
Q Consensus 146 taifs~~ilkeK~t~~~i----~svvLltiG~vll~~ 178 (383)
+.+-..+++|||=|++++ .++++..+|+++++.
T Consensus 249 sTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 249 STIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred eecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 999999999999999875 456666666666553
No 93
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=68.32 E-value=13 Score=36.13 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 043611 325 GVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 325 ~~kiig~~L~l~G~~~yiy 343 (383)
....+|.++++.|...|..
T Consensus 116 ~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred HHHHHHHHHHHHHHHheee
Confidence 4688999999988888755
No 94
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=66.55 E-value=11 Score=26.85 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=5.7
Q ss_pred HHHHhhcchhhh
Q 043611 339 CSYVYGMYVKLK 350 (383)
Q Consensus 339 ~~yiy~~~~~~~ 350 (383)
+..+|+..+.-+
T Consensus 22 Gl~IyQkikqIr 33 (49)
T PF11044_consen 22 GLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHH
Confidence 334566554433
No 95
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=65.85 E-value=3.5 Score=38.87 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=36.4
Q ss_pred hhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 300 GGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 300 asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
++-++.+-...+-+++++++||++.+.|+++.++++.|+...-|
T Consensus 82 asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 82 ASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred hHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence 34455566777889999999999999999999999988876544
No 96
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=64.84 E-value=0.61 Score=45.12 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=95.1
Q ss_pred cCCCcchhHHHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHH-
Q 043611 59 NHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSAL- 137 (383)
Q Consensus 59 ~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sl- 137 (383)
++-|.+|-=|++=++.|.-+..+.+++.. +|. .+.+.+.+++..|++-+..+..-.-+.+++.+|-+.=
T Consensus 22 ~k~GG~p~qQ~lGtT~GALifaiiv~~~~--------~p~--~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPi 91 (288)
T COG4975 22 NKFGGKPYQQTLGTTLGALIFAIIVFLFV--------SPE--LTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPI 91 (288)
T ss_pred eecCCChhHhhhhccHHHHHHHHHHheee--------cCc--cchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccc
Confidence 44455566677777777655444444431 221 4567899999999999988876666666654443322
Q ss_pred HHhhhHHHHHHHHHHHhccccchhHHH----HHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 043611 138 LLSSQLLFNLVFSVIIVKQKITFSNLN----CVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPV 213 (383)
Q Consensus 138 l~ssql~Ftaifs~~ilkeK~t~~~i~----svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l 213 (383)
-..+|++-+.+|+.+.++|=-+..+++ +++++.+|..+-+..+..++ ..++.+++--|+...+.+++.|=.|.++
T Consensus 92 StG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk-~~~~~~n~kkgi~~L~iSt~GYv~yvvl 170 (288)
T COG4975 92 STGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK-EEENPSNLKKGIVILLISTLGYVGYVVL 170 (288)
T ss_pred cchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc-cccChHhhhhheeeeeeeccceeeeEee
Confidence 237899999999999999988887753 55555555444444433222 1222233556888888888888877666
Q ss_pred HHHHH
Q 043611 214 MEMIY 218 (383)
Q Consensus 214 ~q~~~ 218 (383)
.|..-
T Consensus 171 ~~~f~ 175 (288)
T COG4975 171 FQLFD 175 (288)
T ss_pred ecccc
Confidence 65543
No 97
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.60 E-value=1.1e+02 Score=27.53 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH-HHHHhcCCCCccchhHhhhhcCCcchhh
Q 043611 193 YFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALAT-VGMASDGGYPEMKREAQTVYDKGPVVYC 271 (383)
Q Consensus 193 ~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~-vgl~~~g~~~~i~~e~~~~F~~g~~~y~ 271 (383)
..+..++.+.|.++..++..+.-+.-|... .++--..+..++++..++ +.++.++.. ... +.. +.+|
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~---spl~As~isf~vGt~~L~~l~l~~~~~~-~~a--~~~---~~pw--- 70 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLG---SPLLASLISFLVGTVLLLILLLIKQGHP-GLA--AVA---SAPW--- 70 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHHHHHhcCCC-chh--hcc---CCch---
Confidence 345677777788888887777777777763 343334445567776666 445433331 111 111 2122
Q ss_pred hHHHHHHHHHHHHHhhhccceeec-ccchh---hHHHhhHHHHH--HHHHHHHh-----C---CcchhhhHHHHHHHHHH
Q 043611 272 LTIIGNVVTWQLCFMGTAGMVFLT-SSLTG---GISMTAILAMN--VIAGVVVY-----G---DSFGGVKAVSTVLCAWG 337 (383)
Q Consensus 272 l~l~~~av~wq~~~vg~vGlv~~~-Ssl~a---svv~~l~~pv~--~ilAvi~f-----g---E~~~~~kiig~~L~l~G 337 (383)
-.+.-|+.|.+|.. +.+.. +...+...++. .+.+.+.. | .+++..+.+|.++++.|
T Consensus 71 ----------W~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~g 140 (150)
T COG3238 71 ----------WAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAG 140 (150)
T ss_pred ----------HHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHH
Confidence 22233455555543 21111 22233334442 34444422 2 77899999999999988
No 98
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=63.85 E-value=8.3 Score=37.37 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVL 175 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vl 175 (383)
+.-.+.+++-+.-+.+-.+-+-|++..+-=.||.+.|.++....++.+||.|-++.+.+..+
T Consensus 249 i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 249 IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 33334444444666666666788888999999999999999999999999999987776443
No 99
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.44 E-value=1.2e+02 Score=27.16 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHH
Q 043611 36 LVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGL 114 (383)
Q Consensus 36 ~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl 114 (383)
.+..-.++.++...+.=|.| ..++|-.++++-+. |.-+++....+ ++-+. ........|++..+..++|.
T Consensus 10 ~i~aG~~l~~Q~~iN~qL~~-----~~~spl~As~isf~vGt~~L~~l~l~-~~~~~---~~a~~~~~pwW~~~GG~lGa 80 (150)
T COG3238 10 AILAGALLPLQAAINGRLAR-----YLGSPLLASLISFLVGTVLLLILLLI-KQGHP---GLAAVASAPWWAWIGGLLGA 80 (150)
T ss_pred HHHHhhhhhhHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHHHHHHH-hcCCC---chhhccCCchHHHHccchhh
Confidence 33444456667666666654 34678888888777 77776643333 21111 11122334566666667776
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHh----ccccchhHHHHHHHHHHHH
Q 043611 115 LLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIV----KQKITFSNLNCVILLTLSS 173 (383)
Q Consensus 115 l~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~il----keK~t~~~i~svvLltiG~ 173 (383)
++=..|.+-.- +.=.+-+-.++.+.|++..++.-.|=. ++++++.++.+++++.+|+
T Consensus 81 ~~vt~s~~l~p--~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gi 141 (150)
T COG3238 81 IFVTSSILLAP--RLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGI 141 (150)
T ss_pred hhhhhhHHhcc--chhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHH
Confidence 64333322211 113445667788999999999877755 5999999999999888883
No 100
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=59.37 E-value=73 Score=31.74 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=79.3
Q ss_pred ccchHHHHHHHHHH-HHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhcccccccc---------CCC---
Q 043611 29 SKSYLVLLVTNYLC-LFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLPYYLFKC---------TER--- 95 (383)
Q Consensus 29 ~~~~~~~~~~~~~~-l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~~~~~~~---------~~~--- 95 (383)
...||.+.+...++ ++++.-.+--..+.|-.+| +| |=.++--+---|+ |+|+. ..+. +..
T Consensus 158 ~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG-Kh-~~EalFytH~LsL---P~Flf--~~~div~~~~~~~~se~~~ 230 (330)
T KOG1583|consen 158 DFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG-KH-WKEALFYTHFLSL---PLFLF--MGDDIVSHWRLAFKSESYL 230 (330)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-hHHHHHHHHHhcc---chHHH--hcchHHHHHHHHhcCccee
Confidence 34456554444443 6666666666666666665 55 5566555555555 34433 1110 111
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHH----HHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 043611 96 RPFSHFTTKVLTLSILVGLLLGLNN----LLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTL 171 (383)
Q Consensus 96 ~~~~~~~~~~~~~~~~~Gll~a~~~----~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLlti 171 (383)
-|.....-.....|.+.-++ .+. ..|.++-. .++-|.+++...-=.++.++|....+..+|+++|+|..+.++
T Consensus 231 ~p~~g~~vP~~~~yLl~n~L--~Qy~CikgVy~L~te-~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~ 307 (330)
T KOG1583|consen 231 IPLLGFKVPSMWVYLLFNVL--TQYFCIKGVYILTTE-TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFF 307 (330)
T ss_pred ccccCccccHHHHHHHHHHH--HHHHHHHhhhhhhce-ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHH
Confidence 11111111223333333333 221 22333222 344455666677778999999999999999999999999999
Q ss_pred HHHHhcc
Q 043611 172 SSVLLAL 178 (383)
Q Consensus 172 G~vll~~ 178 (383)
|..+-+.
T Consensus 308 Gt~~fa~ 314 (330)
T KOG1583|consen 308 GTLLFAN 314 (330)
T ss_pred HHHHHHH
Confidence 9887753
No 101
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=59.12 E-value=2.1e+02 Score=29.14 Aligned_cols=130 Identities=22% Similarity=0.215 Sum_probs=74.0
Q ss_pred HhhhhhHhhhhHhhcC----CCcchhHHHHHHHh-hhhhhhhhhhccccccccCCCCCCCCcchHHH---HHHHHHHHHH
Q 043611 45 VGSVSASLLSKYYFNH----KGSSRWVSTWVQCA-GFPLLLPPIFLPYYLFKCTERRPFSHFTTKVL---TLSILVGLLL 116 (383)
Q Consensus 45 ~g~~~~~Ll~r~y~~~----gg~~~w~~t~vq~~-g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Gll~ 116 (383)
+++|.-+-+.-.||++ ++.+.|++.+-+.. |-+..+.-....- ..+..+..-+..+++..| +.-++=|++.
T Consensus 189 l~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d-~~~i~~~gff~G~s~~vw~vVl~~a~gGLlv 267 (345)
T KOG2234|consen 189 LVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQD-GEAINEYGFFYGYSSIVWLVVLLNAVGGLLV 267 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcc-ccccccCCccccccHHHHHHHHHHhccchhH
Confidence 3445555555569988 33445777665544 5554442222210 111111222444444322 2223333443
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCC
Q 043611 117 GLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGH 182 (383)
Q Consensus 117 a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~ 182 (383)
+.=++|.+--.-..-.+...+++++.|+.+...++|..=..|+.+.+.+..+-...|..
T Consensus 268 -------s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 268 -------SLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred -------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 33345555444444445678899999999999999999999999888887777755543
No 102
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=53.16 E-value=74 Score=31.94 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=72.0
Q ss_pred HHHHHHHhhhhhhhhhhhcccccccc-CCCCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHh
Q 043611 67 VSTWVQCAGFPLLLPPIFLPYYLFKC-TERRP-----FSHFTTKVLTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLS 140 (383)
Q Consensus 67 ~~t~vq~~g~plll~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~s 140 (383)
++++-|..|.-+.-..+... |+... ....+ ..+--.++++.+..+|.. ++++.| +-+..--+-+.+.+..
T Consensus 200 ~s~~~mM~~vNLf~~i~~~~-~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gav--GQ~FI~-~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 200 VSSLHMMFGVNLFSAILNGT-YLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAV--GQLFIF-YTIERFGSLTFTTIMT 275 (327)
T ss_pred ccHhHHHHHHHHHHHHHHHH-hhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhh--hhheeh-hhHhhcccHHHHHHHH
Confidence 46677777766555333333 22222 11111 112233678888888887 777777 6666666668888999
Q ss_pred hhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 043611 141 SQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVL 175 (383)
Q Consensus 141 sql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vl 175 (383)
+-=+|+.++|.+..+++++..||.++.+.+.|..+
T Consensus 276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 99999999999999999999999999866666443
No 103
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=52.00 E-value=2.3e+02 Score=27.29 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 043611 227 VMEMQLVMEIAATALATVGMASDGG 251 (383)
Q Consensus 227 vlemq~~~~l~a~~~~~vgl~~~g~ 251 (383)
.+++..++..+|+.+..+-++....
T Consensus 66 ~lRi~v~IlvIA~~V~~v~~~L~a~ 90 (231)
T PRK12405 66 EIRIPIFVMIIASFVTVVQLLMNAY 90 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777777665554
No 104
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=49.41 E-value=7.8 Score=38.84 Aligned_cols=64 Identities=20% Similarity=0.074 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLA 177 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~ 177 (383)
++.=+.|+.-++-+..+.+-|+++....+-++..+.++++++++.|+.++.|..++++|..+-.
T Consensus 243 v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 243 VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 4433445555588999999999999999999999999999999999999999999999976654
No 105
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=48.63 E-value=59 Score=29.45 Aligned_cols=54 Identities=19% Similarity=-0.044 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCC-cchhhhHHHHHHHHHHHHHHHhhcchhhhhHHhhhhhhhhhh
Q 043611 310 MNVIAGVVVYGD-SFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKV 363 (383)
Q Consensus 310 v~~ilAvi~fgE-~~~~~kiig~~L~l~G~~~yiy~~~~~~~k~~~~~~~~~~~~ 363 (383)
...+.++..-++ .....-+.|+.-.+.|-.+-..++|..+|.+++++..|.|++
T Consensus 18 ~~~v~G~~~a~~~~~~~i~~~Gla~~iA~a~Sma~g~yvs~~~~~~~~~~~~~~~ 72 (175)
T cd02437 18 LGVVFGASLAFDLDPKIIIAAGLGGAFALGISNGLGAAVAEEGSLRGMLEEKEKI 72 (175)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 334444444455 777778888888888888888888887764443333344444
No 106
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=47.93 E-value=51 Score=31.90 Aligned_cols=132 Identities=18% Similarity=0.211 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhhcCC----ChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCCCCCCC
Q 043611 111 LVGLLLGLNNLLFSWGNSYL----PVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSGHDKSP 186 (383)
Q Consensus 111 ~~Gll~a~~~~Ly~~gl~yl----p~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~~~~~~ 186 (383)
++|++.+.- ++| +|+.-. =..+.++=+-.+.++..+|-+.=.|+| +-..+..+.+..+++.++...-..++
T Consensus 46 l~~ll~~~l-Wl~-YG~~~~~d~llitIN~~G~~ie~~Yi~~f~~ya~~k~-~~~~~~~~~~~~~~~~i~~~~~~~~~-- 120 (243)
T KOG1623|consen 46 LMGLLSCSL-WLY-YGLLKVHDYLLITINGIGLVIETVYISIFLYYAPKKK-TVKIVLALVLGVIGLIILLTLLLFHD-- 120 (243)
T ss_pred HHHHHHHHH-HHH-hhhhccCceEEEEEehhcHHHHHHHHHHHheecCchh-eeEeeehHHHHHHHHHHHHHHHhcCC--
Confidence 344442222 666 664322 222233333456677777777777777 44444444444455444432221111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHh
Q 043611 187 DLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMAS 248 (383)
Q Consensus 187 ~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~ 248 (383)
..+....+|++|+...-..||-=+...+++.|+-.+-.+++-++....+.+..=++=|++.
T Consensus 121 -~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli 181 (243)
T KOG1623|consen 121 -PERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI 181 (243)
T ss_pred -cceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh
Confidence 1223468999999999999998777777666664322334444444544555555556655
No 107
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.90 E-value=61 Score=27.26 Aligned_cols=34 Identities=15% Similarity=-0.045 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHH
Q 043611 306 AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFC 339 (383)
Q Consensus 306 l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~ 339 (383)
+...+...+++..++|++.+..+.|..+++.|..
T Consensus 78 ItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~ 111 (116)
T COG3169 78 ITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVY 111 (116)
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 4455567889999999999999999998886543
No 108
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=46.77 E-value=29 Score=29.40 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhCCcchhhhHHHHHHHHHH
Q 043611 306 AILAMNVIAGVVVYGDSFGGVKAVSTVLCAWG 337 (383)
Q Consensus 306 l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G 337 (383)
+.+.+...+++++++|++++..+.|.++++.+
T Consensus 71 itL~vF~~Fsv~~l~E~l~~n~l~af~~i~~a 102 (108)
T PF04342_consen 71 ITLVVFAPFSVFYLGEPLKWNYLWAFLCILGA 102 (108)
T ss_pred HhhheeHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 33444578899999999999999999999854
No 109
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=45.30 E-value=36 Score=29.30 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=28.1
Q ss_pred cchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhh
Q 043611 297 SLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYG 344 (383)
Q Consensus 297 sl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~ 344 (383)
++.......-..|+..++...+++..+......+.+..+.|+..++.-
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~ 113 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLI 113 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566776555556666666655666666666666666443
No 110
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=44.42 E-value=21 Score=28.73 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHhhcc
Q 043611 326 VKAVSTVLCAWGFCSYVYGMY 346 (383)
Q Consensus 326 ~kiig~~L~l~G~~~yiy~~~ 346 (383)
.=++|+++.++|...+++++.
T Consensus 5 ~Fl~~l~lliig~~~~v~~~G 25 (92)
T PF13038_consen 5 LFLVGLILLIIGGFLFVFQSG 25 (92)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 347889999999999888643
No 111
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=41.04 E-value=28 Score=35.48 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 326 VKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 326 ~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
...+++++++++..=|.|+.|...|+
T Consensus 196 ~~~~~~~~~via~~D~~~q~~~~~k~ 221 (358)
T PRK13109 196 VSAVAIATIVLVALDLVWARFHWRRS 221 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888889987755543
No 112
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=40.00 E-value=36 Score=35.14 Aligned_cols=28 Identities=14% Similarity=-0.118 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 324 GGVKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 324 ~~~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
.....++++++++++.=|.|+.|...|+
T Consensus 192 ~l~~~~~~~~~via~~D~~~qr~~~~k~ 219 (386)
T PRK12468 192 FCGLVVVLGLSPMVGFDVFYQITSHIKK 219 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777788889999987755554
No 113
>PRK09108 type III secretion system protein HrcU; Validated
Probab=39.30 E-value=30 Score=35.18 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 324 GGVKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 324 ~~~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
...-.++++++++++.=|.|+.|...|+
T Consensus 187 ~l~~~~~~~~~via~~D~~~qr~~~~k~ 214 (353)
T PRK09108 187 KLLAVAAGVFLLVGAADWKIQRWLFIRD 214 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777888888899987755543
No 114
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=39.22 E-value=32 Score=35.00 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=19.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 323 FGGVKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 323 ~~~~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
+...-.+.++++++|+.=|.|+.|...|+
T Consensus 184 ~~l~~~~~~~~~via~~D~~~qr~~~~k~ 212 (349)
T PRK12721 184 FWLWGGLLACYLVFGILDYSFQRYKIMKQ 212 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566677788888889987755443
No 115
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=38.91 E-value=2.4e+02 Score=24.27 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=33.3
Q ss_pred HHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH
Q 043611 68 STWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL 115 (383)
Q Consensus 68 ~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 115 (383)
++.|-+.-||++.+-+-.. +++++=.+.|...-.|+..+.++.+|++
T Consensus 31 ~s~VpFSiFPlIaLvLavy-~LyQ~Yl~~~m~eg~P~~a~acFflG~f 77 (117)
T PF07226_consen 31 SSEVPFSIFPLIALVLAVY-CLYQRYLNHPMPEGTPKLALACFFLGLF 77 (117)
T ss_pred hcccccHHHHHHHHHHHHH-HHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 5667788999987544444 4555545555555678999999999987
No 116
>PF14184 YrvL: Regulatory protein YrvL
Probab=38.05 E-value=2.6e+02 Score=24.40 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Q 043611 194 FIGFFCTVGAGLLFALYLPVMEMIYKKVY-CYSMVMEMQ 231 (383)
Q Consensus 194 ~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~-~~~~vlemq 231 (383)
..++.+++...+.+|.+...+--.++=.. .|...-.+.
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~ll 43 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLL 43 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHH
Confidence 45677777777888887776666666654 555553333
No 117
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=37.71 E-value=40 Score=34.38 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhcchhhh
Q 043611 325 GVKAVSTVLCAWGFCSYVYGMYVKLK 350 (383)
Q Consensus 325 ~~kiig~~L~l~G~~~yiy~~~~~~~ 350 (383)
..-.++++++++|+.=|.|+.|...|
T Consensus 193 l~~~~~~~~~via~~D~~~qr~~~~k 218 (359)
T PRK05702 193 LLLLVVLALLVIAAIDVPFQRWQYLK 218 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888889998775544
No 118
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=37.07 E-value=85 Score=33.21 Aligned_cols=24 Identities=8% Similarity=-0.147 Sum_probs=20.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhhcc
Q 043611 323 FGGVKAVSTVLCAWGFCSYVYGMY 346 (383)
Q Consensus 323 ~~~~kiig~~L~l~G~~~yiy~~~ 346 (383)
++..|++++++++.|+..++|.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 789999999999999988777654
No 119
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=36.46 E-value=36 Score=34.44 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhcchhhh
Q 043611 325 GVKAVSTVLCAWGFCSYVYGMYVKLK 350 (383)
Q Consensus 325 ~~kiig~~L~l~G~~~yiy~~~~~~~ 350 (383)
..-.++++++++|..=|.|+.|...|
T Consensus 185 l~~~~~~~~~via~~D~~~qr~~~~k 210 (342)
T TIGR01404 185 LILVCLGFFLVVGLADFAFQRYLFMK 210 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777788888888765544
No 120
>PRK06298 type III secretion system protein; Validated
Probab=35.16 E-value=45 Score=34.01 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 326 VKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 326 ~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
.-.++++++++|..=|.|+.|...|+
T Consensus 188 ~~~~~~~~~via~~D~~~qr~~~~k~ 213 (356)
T PRK06298 188 VTSIGIFFLVVAVLDLVYQRHNFAKE 213 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888899987755543
No 121
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=35.03 E-value=4.8e+02 Score=26.12 Aligned_cols=76 Identities=7% Similarity=0.134 Sum_probs=38.8
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 043611 155 KQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVM 234 (383)
Q Consensus 155 keK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~ 234 (383)
++.+...-+.++.++.+|..+...--+. .++.+|.++++. +=+...++=.. .+.+.+=.
T Consensus 129 g~eL~~~~~~Al~~alv~I~iYV~~RFe--------~~~a~aaI~al~----hDvii~~g~~s---------lfgiE~~l 187 (305)
T COG0341 129 GKELARQGLLALLLALVGILIYVFFRFE--------WRFALAAILALL----HDVIITLGFFS---------LFGIEFNL 187 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeee--------hHHHHHHHHHHH----HHHHHHHHHHH---------HhheeecH
Confidence 4556667777777777776666544332 113344444333 22222222111 11222223
Q ss_pred HHHHHHHHHHHHHhcCC
Q 043611 235 EIAATALATVGMASDGG 251 (383)
Q Consensus 235 ~l~a~~~~~vgl~~~g~ 251 (383)
..+|.++.++|.-++.+
T Consensus 188 ~~IAAlLtiIGYSvNDt 204 (305)
T COG0341 188 ATIAALLTIIGYSVNDT 204 (305)
T ss_pred HHHHHHHHHeeeccCCe
Confidence 45788888899877664
No 122
>PRK11056 hypothetical protein; Provisional
Probab=34.51 E-value=2.7e+02 Score=24.09 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHHHHHhhhhhhhhhhhccccccccCCCCCCCCcchHHHHHHHHHHHH
Q 043611 68 STWVQCAGFPLLLPPIFLPYYLFKCTERRPFSHFTTKVLTLSILVGLL 115 (383)
Q Consensus 68 ~t~vq~~g~plll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll 115 (383)
++.|-+.-||++.+-+-.. +++++=.+++...-.|+..+.++.+|++
T Consensus 31 ~s~VpFSiFPlIaLvLavy-cLyQ~Yl~~~m~eg~P~~a~acFflG~f 77 (120)
T PRK11056 31 SSIVPFSIFPLIALVLAVY-CLHQRYLNRPMPEGLPGLAAACFFLGVF 77 (120)
T ss_pred ccccccHHHHHHHHHHHHH-HHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 4677888999987544444 4555545555555678999999999977
No 123
>PRK08156 type III secretion system protein SpaS; Validated
Probab=34.36 E-value=39 Score=34.53 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 326 VKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 326 ~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
...++++++++++.=|.|+.|...|+
T Consensus 182 ~~~~~~~~lvia~~D~~~Qr~~~~k~ 207 (361)
T PRK08156 182 VLTFLACALIVLILDFIAEYFLHMKD 207 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888899987755543
No 124
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=34.34 E-value=3.4e+02 Score=28.52 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=33.1
Q ss_pred hHHHH-HHHHHHHHhCCcchhhhHHHHHHHHHHHHH--HHhhcchhhhh
Q 043611 306 AILAM-NVIAGVVVYGDSFGGVKAVSTVLCAWGFCS--YVYGMYVKLKL 351 (383)
Q Consensus 306 l~~pv-~~ilAvi~fgE~~~~~kiig~~L~l~G~~~--yiy~~~~~~~k 351 (383)
+.+|= .|+.+.-.+|-++....+.|.++.+-.... ++|.+|.+++.
T Consensus 153 lvPPtPgpla~a~~lg~dlG~~il~Gl~vaip~~~iag~~~~~~~~~~~ 201 (441)
T PF02447_consen 153 LVPPTPGPLAAAGALGADLGLVILYGLIVAIPAMLIAGPLYGRFISKRI 201 (441)
T ss_pred ccCCCCcHHHHHHHhCCChhHHHHHhHHHHHHHHHHHHHHHHHHhccCC
Confidence 44554 477777888999999999998888876644 56766655543
No 125
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=33.50 E-value=39 Score=36.91 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 326 VKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 326 ~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
...+++++++++..=|.|++|...||
T Consensus 450 ~~~~~~~~~via~~D~~~q~~~~~k~ 475 (609)
T PRK12772 450 FFRITLIMIIIAVADYVYQKYQYNKD 475 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777888889987755543
No 126
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=33.35 E-value=1.3e+02 Score=29.23 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC
Q 043611 106 LTLSILVGLLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS 180 (383)
Q Consensus 106 ~~~~~~~Gll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~ 180 (383)
+.+-+..|+.--+..+.-.+-++-+...+++++.+.+=.--++-+.+++.++.++..+.++.+=+++.++-+.+.
T Consensus 224 l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak 298 (309)
T COG5070 224 LMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred HHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454433444555667777888999999999998899999999999999999999988888877776543
No 127
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=32.55 E-value=43 Score=29.22 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=15.5
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHhh
Q 043611 320 GDSFGGVKAVSTVLCAWGFCSYVYG 344 (383)
Q Consensus 320 gE~~~~~kiig~~L~l~G~~~yiy~ 344 (383)
+++-+..++.|.++.-.|+.....+
T Consensus 74 n~~~si~~~~G~vlLs~GLmlL~~~ 98 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLMLLACS 98 (129)
T ss_pred cCCcchhhhehHHHHHHHHHHHHhh
Confidence 5555566677766666666655554
No 128
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=31.90 E-value=63 Score=28.34 Aligned_cols=46 Identities=22% Similarity=0.114 Sum_probs=21.4
Q ss_pred HHhCCcchhhhHHHHHHHHHHHHHHHhhcchhhhhHHhhhhhhhhhhhh-hhh
Q 043611 317 VVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQEKEKFGEAEKVES-QKE 368 (383)
Q Consensus 317 i~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~~k~~~~~~~~~~~~~~-~~~ 368 (383)
.+++++....-+++.+... .+-.|..+|++|.+++=++=-||. ||+
T Consensus 53 ~~~~~~~~l~~ll~~~~~~------~~~~~~~kK~eKAEkefhaLRcEiI~kS 99 (130)
T PF10864_consen 53 AILGSPVHLFWLLALAFSY------WAMYYLKKKEEKAEKEFHALRCEIIQKS 99 (130)
T ss_pred HHHcChHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHHHHHHhH
Confidence 3456665544444443333 333344455555444434435555 544
No 129
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=31.88 E-value=71 Score=23.87 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 043611 326 VKAVSTVLCAWGFCSY 341 (383)
Q Consensus 326 ~kiig~~L~l~G~~~y 341 (383)
.-++|+-+.-.|.+.|
T Consensus 19 ~~Lig~T~~~g~~~~~ 34 (59)
T PF14880_consen 19 LGLIGFTVYGGGLTVY 34 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455655555555555
No 130
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=31.79 E-value=32 Score=30.04 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhHhhcCCCcchhHHHHHHHhhhhhhhhhhhcc
Q 043611 33 LVLLVTNYLCLFVGSVSASLLSKYYFNHKGSSRWVSTWVQCAGFPLLLPPIFLP 86 (383)
Q Consensus 33 ~~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg~~~w~~t~vq~~g~plll~~~~~~ 86 (383)
.+.++++.+.+++.++++.+|.|.--.+=.|.+|+-+-+-+.|+-....++.+.
T Consensus 55 ~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlTt~gyvpIffaV~ly 108 (130)
T PF08627_consen 55 NFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLTTFGYVPIFFAVVLY 108 (130)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhcccceehHHHHHHHH
Confidence 378888888999999999999999999988999999999888876666665544
No 131
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=31.45 E-value=63 Score=25.18 Aligned_cols=31 Identities=3% Similarity=0.103 Sum_probs=13.3
Q ss_pred CcchhhhHHH-HHHHHHHHHHHHhhcchhhhh
Q 043611 321 DSFGGVKAVS-TVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 321 E~~~~~kiig-~~L~l~G~~~yiy~~~~~~~k 351 (383)
+.+...-++| +++.+.++.+..|-+.+++|+
T Consensus 31 ~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr 62 (68)
T PF04971_consen 31 SQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRR 62 (68)
T ss_pred ccchhHHHHHHHHHHHHHHHhHhhhhhhHhhh
Confidence 3343333343 333454555555544344333
No 132
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.76 E-value=16 Score=36.13 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHhhhHHHHHHH-HHHHhccc-cchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCc
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALLLSSQLLFNLVF-SVIIVKQK-ITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKS 191 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll~ssql~Ftaif-s~~ilkeK-~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~ 191 (383)
+++|.-.++| +-++-+.-+...++.|.-++...|. -.+++|+| +-+.-..+++++.+...+..+-.- +..
T Consensus 32 ll~ail~w~~-iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tL-------tGQ 103 (381)
T PF05297_consen 32 LLVAILVWFF-IIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTL-------TGQ 103 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH-HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHh-------hcc
Confidence 3344444555 4445566666666666555444333 23333444 445555555533333222222211 222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043611 192 KYFIGFFCTVGAGLLFALYLPVMEMIYKKVY 222 (383)
Q Consensus 192 ~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~ 222 (383)
..++|+++.+....+-=..+++++ ..+++.
T Consensus 104 ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~G 133 (381)
T PF05297_consen 104 TLFVGIVILFLCCLLALGVWFYMW-LLRELG 133 (381)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Confidence 256677665554444444444444 455553
No 133
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=30.60 E-value=7.5e+02 Score=27.11 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=21.0
Q ss_pred HHHhhhHHHHHHH-HHHHhc-cccchhHHHHHHHHHHHHHHhc
Q 043611 137 LLLSSQLLFNLVF-SVIIVK-QKITFSNLNCVILLTLSSVLLA 177 (383)
Q Consensus 137 ll~ssql~Ftaif-s~~ilk-eK~t~~~i~svvLltiG~vll~ 177 (383)
........+.+++ ..++-+ +++.+..+.+.++.+++...++
T Consensus 356 ~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama 398 (599)
T PF06609_consen 356 SPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMA 398 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence 3334444444332 333322 4565665678777776644443
No 134
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=30.47 E-value=4.6e+02 Score=27.30 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=32.5
Q ss_pred HHHHHhhcCCChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHH
Q 043611 121 LLFSWGNSYLPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCV 166 (383)
Q Consensus 121 ~Ly~~gl~ylp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~sv 166 (383)
-+|.++=.-+|. -++...|.++-.+|++++.=+.+.+-=..++
T Consensus 298 kLweL~~l~lpl---~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV 340 (404)
T COG0786 298 KLWELADLALPL---LVILAVQTIVMALFAIFVTFRLMGKNYDAAV 340 (404)
T ss_pred HHHHHHhccccH---HHHHHHHHHHHHHHHHHHHHHHhCcchhHHH
Confidence 566666555776 6788999999999999988777766555544
No 135
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=30.11 E-value=74 Score=27.18 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=28.5
Q ss_pred HHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHH
Q 043611 302 ISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFC 339 (383)
Q Consensus 302 vv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~ 339 (383)
++.++.-..+.+.+.++.+|..+...++|+.+++.|+.
T Consensus 73 i~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 73 IANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA 110 (113)
T ss_pred HHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence 33445555667777777777778888999999998864
No 136
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=28.72 E-value=68 Score=32.58 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 326 VKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 326 ~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
.-.+++++++++..=|.|+.|...|+
T Consensus 187 ~~~~~~~~~via~~D~~~qr~~~~k~ 212 (347)
T TIGR00328 187 LILVLLLLLVIAVFDYFFQRWQYIKS 212 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777888889987755543
No 137
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=28.02 E-value=3.8e+02 Score=26.82 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=41.1
Q ss_pred CChhHHHHHHhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611 130 LPVSTSALLLSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALG 179 (383)
Q Consensus 130 lp~St~sll~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~ 179 (383)
--+.+.+.+...-=+.|.++||+++.+++|-...-|..+..+|+.+=..+
T Consensus 284 fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 284 FGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred hchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence 35667778888888999999999999999999999998888885554433
No 138
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=27.87 E-value=73 Score=24.09 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHH
Q 043611 325 GVKAVSTVLCAWGFCSY 341 (383)
Q Consensus 325 ~~kiig~~L~l~G~~~y 341 (383)
..-++|.++.+.|.+.|
T Consensus 7 ~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 7 YALFVGGFVGLIGAALY 23 (58)
T ss_pred chhhHHHHHHHHHHHHh
Confidence 34578999999999999
No 139
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=27.51 E-value=45 Score=29.46 Aligned_cols=14 Identities=21% Similarity=0.033 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 043611 328 AVSTVLCAWGFCSY 341 (383)
Q Consensus 328 iig~~L~l~G~~~y 341 (383)
+.++.|+..|++.-
T Consensus 9 la~~aLaAAG~G~A 22 (137)
T PF12868_consen 9 LAEAALAAAGAGYA 22 (137)
T ss_pred HhHHHHHHHHHHHH
Confidence 44555555555544
No 140
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=27.24 E-value=60 Score=25.30 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=27.1
Q ss_pred Ccchh--hhHHHHHH-HHHHHHHHHhhcchhhhhHHhhhh
Q 043611 321 DSFGG--VKAVSTVL-CAWGFCSYVYGMYVKLKLQEKEKF 357 (383)
Q Consensus 321 E~~~~--~kiig~~L-~l~G~~~yiy~~~~~~~k~~~~~~ 357 (383)
|.+++ +..||.+- ++.|+..|+-+-|-+.|+.+++..
T Consensus 26 d~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 26 DQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred hccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhHhh
Confidence 56665 55568888 667999999998988777766543
No 141
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.97 E-value=3.5e+02 Score=30.50 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=32.5
Q ss_pred hcC-CChhHHHHHHhhhHHHHHH-----HHHHHhccccchhHHHHHHHHHH
Q 043611 127 NSY-LPVSTSALLLSSQLLFNLV-----FSVIIVKQKITFSNLNCVILLTL 171 (383)
Q Consensus 127 l~y-lp~St~sll~ssql~Ftai-----fs~~ilkeK~t~~~i~svvLlti 171 (383)
.+| +|+|.++++..+=.++.+. -++++.|-|++.+.....++.+.
T Consensus 421 ~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~ 471 (735)
T KOG3626|consen 421 TQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCS 471 (735)
T ss_pred HHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHH
Confidence 345 8899999998766666544 45677889999998877764443
No 142
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=26.83 E-value=75 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=22.1
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHH
Q 043611 146 NLVFSVIIVKQKITFSNLNCVILLTLSSV 174 (383)
Q Consensus 146 taifs~~ilkeK~t~~~i~svvLltiG~v 174 (383)
-+.||.+++||++++.++.|-+.+ +|++
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i-~~av 103 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCI-LGAV 103 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHH-HHhh
Confidence 356888999999999999998755 4444
No 143
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=25.53 E-value=5.4e+02 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhhHhhhhHhhcCCC
Q 043611 38 TNYLCLFVGSVSASLLSKYYFNHKG 62 (383)
Q Consensus 38 ~~~~~l~~g~~~~~Ll~r~y~~~gg 62 (383)
+......+|+..+|.+.....++.|
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~ 151 (352)
T cd06174 127 LFSAGFGLGALLGPLLGGLLAESLG 151 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555666777777777766654
No 144
>PHA03049 IMV membrane protein; Provisional
Probab=25.26 E-value=52 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHH-Hhhc
Q 043611 326 VKAVSTVLCAWGFCSY-VYGM 345 (383)
Q Consensus 326 ~kiig~~L~l~G~~~y-iy~~ 345 (383)
.-+++...++.|+..| +|++
T Consensus 5 ~~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 3456778888888887 5643
No 145
>PRK01844 hypothetical protein; Provisional
Probab=25.08 E-value=90 Score=24.62 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhHhhcC
Q 043611 33 LVLLVTNYLCLFVGSVSASLLSKYYFNH 60 (383)
Q Consensus 33 ~~~~~~~~~~l~~g~~~~~Ll~r~y~~~ 60 (383)
|+.+.+.++++++|..++-.+.|.|+.+
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556678999999999999999987
No 146
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=24.48 E-value=8.7e+02 Score=25.79 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhcchhhhhH
Q 043611 330 STVLCAWGFCSYVYGMYVKLKLQ 352 (383)
Q Consensus 330 g~~L~l~G~~~yiy~~~~~~~k~ 352 (383)
...+++.++.-|++|+|-|+|+.
T Consensus 202 i~~i~~iai~h~fwqr~~Dkk~~ 224 (455)
T PRK09804 202 SCVIISVAISHFFVQRAFDKKDK 224 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 44455556788999999998874
No 147
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=24.38 E-value=49 Score=25.72 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHH-Hhhc
Q 043611 326 VKAVSTVLCAWGFCSY-VYGM 345 (383)
Q Consensus 326 ~kiig~~L~l~G~~~y-iy~~ 345 (383)
.-+++...++.|+..| +|++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 3467788888888777 5543
No 148
>COG4711 Predicted membrane protein [Function unknown]
Probab=24.32 E-value=5.1e+02 Score=24.64 Aligned_cols=72 Identities=11% Similarity=-0.028 Sum_probs=46.8
Q ss_pred HHHhccccchhHHHHHHHHHHHHHHhcccC--CCCCCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043611 151 VIIVKQKITFSNLNCVILLTLSSVLLALGS--GHDKSP-DLPKSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVY 222 (383)
Q Consensus 151 ~~ilkeK~t~~~i~svvLltiG~vll~~~~--~~~~~~-~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~ 222 (383)
...+..|+++++.+++++.+++..-..+.. ++++++ +...+--..=+.-++..+.+..+...++=..|.+..
T Consensus 114 vwllA~~isp~h~lal~~~~l~I~y~fvy~a~f~~~~~~~~~~g~vp~rl~~tmv~y~~~~l~~~y~l~~f~~~~ 188 (217)
T COG4711 114 VWLLAYRISPYHSLALVLVVLVIMYSFVYTAKFGNDKKREEGAGFVPRRLRTTMVIYFVSSLASIYMLGIFTRFD 188 (217)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccceeeeehHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 457789999999999998888766554332 222221 222222234566677777777777777778888874
No 149
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=24.22 E-value=99 Score=31.73 Aligned_cols=17 Identities=6% Similarity=0.002 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 043611 326 VKAVSTVLCAWGFCSYVYG 344 (383)
Q Consensus 326 ~kiig~~L~l~G~~~yiy~ 344 (383)
.|++|+++++ ...+.+.
T Consensus 340 gKL~~Gi~Ai--~~A~~~~ 356 (372)
T PRK15086 340 GKLIGGITAI--GVAILLS 356 (372)
T ss_pred HHHHHHHHHH--HHHHHHh
Confidence 4899999988 3444443
No 150
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=23.57 E-value=3e+02 Score=24.12 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhcccCCCC---CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043611 142 QLLFNLVFSVIIVKQ-KITFSNLNCVILLTLSSVLLALGSGHD---KSPDLPKSKYFIGFFCTVGAGLLFALYLPVMEMI 217 (383)
Q Consensus 142 ql~Ftaifs~~ilke-K~t~~~i~svvLltiG~vll~~~~~~~---~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l~q~~ 217 (383)
...++....+++.|+ |--++...+.. .++++.++++.... .++...+....-+++-.+.+++.|--|+...+++
T Consensus 66 ~~~~~l~~~~lffkr~~~~P~~~I~~l--l~~v~~~~l~~~~~~~~~~~~~~d~~~i~~l~~~li~a~IwipYf~~S~RV 143 (149)
T PF10754_consen 66 MWLFTLWLLYLFFKRKRRFPKLYIIWL--LISVLFIALDAFAFSYIFPSPVIDAEAIRELLRSLIAAAIWIPYFLRSKRV 143 (149)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHH--HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 345666666665554 55555555443 22322222221000 0012223335668999999999999999998887
Q ss_pred HHh
Q 043611 218 YKK 220 (383)
Q Consensus 218 ~kk 220 (383)
-+.
T Consensus 144 K~T 146 (149)
T PF10754_consen 144 KNT 146 (149)
T ss_pred hhh
Confidence 654
No 151
>PRK02935 hypothetical protein; Provisional
Probab=23.46 E-value=49 Score=27.99 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=31.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 043611 155 KQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALY 210 (383)
Q Consensus 155 keK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~ 210 (383)
.-|+++.+-.|+.+.++|..+.-++-+-..+.-.-.--..+|+++.+++.++|=-.
T Consensus 6 ssKINkiRt~aL~lvfiG~~vMy~Giff~~~~~~m~ifm~~G~l~~l~S~vvYFwi 61 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVMYLGIFFRESIIIMTIFMLLGFLAVIASTVVYFWI 61 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888889988888877664443211100000001245777776666665443
No 152
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.18 E-value=77 Score=27.12 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 043611 155 KQKITFSNLNCVILLTLSSVLLALGSGHDKSPDLPKSKYFIGFFCTVGAGLLFALYLPV 213 (383)
Q Consensus 155 keK~t~~~i~svvLltiG~vll~~~~~~~~~~~~s~~~~~iG~~l~L~Aa~l~gl~~~l 213 (383)
+.|+++.+-.|+.|.++|.+++-++-.-....-.-.--.++|++.++++.+.|-...-+
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGml 63 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGML 63 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45788899999998888877665443211000000001346777777777776665433
No 153
>PRK02237 hypothetical protein; Provisional
Probab=22.63 E-value=1.6e+02 Score=25.04 Aligned_cols=38 Identities=3% Similarity=-0.048 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccCC
Q 043611 144 LFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGSG 181 (383)
Q Consensus 144 ~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~~ 181 (383)
+.+.+..+++-|+|++++-+.|..+..+|+.++...|.
T Consensus 71 ~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 71 AGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 34556678888999999999999999999988876653
No 154
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=22.20 E-value=4.2e+02 Score=23.26 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=35.1
Q ss_pred cccchhhHHHhhHHHH-HHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHhhcchhhhhHH
Q 043611 295 TSSLTGGISMTAILAM-NVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVYGMYVKLKLQE 353 (383)
Q Consensus 295 ~Ssl~asvv~~l~~pv-~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy~~~~~~~k~~ 353 (383)
.+...+++.+...--+ .|+.+..+.++..+..-..=..-++.|++=|++.+|.+++...
T Consensus 56 ~gN~~AtiaD~~La~~~iW~~~~~~~~~~~~~~~~allsA~~i~v~E~fFH~yl~~~~~~ 115 (136)
T PF10710_consen 56 TGNIVATIADFGLAFLVIWLMGYILTGNYVSIAWAALLSAVLIGVGEYFFHRYLLRNVLR 115 (136)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3444556666544444 5888888888555432221122246678999998887766443
No 155
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.10 E-value=1e+03 Score=25.85 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcC-CChhHHHHHHhh-hHHHHHHHHHHHhcccc
Q 043611 101 FTTKVLTLSILVGLLLGLNNLLFSWGNSY-LPVSTSALLLSS-QLLFNLVFSVIIVKQKI 158 (383)
Q Consensus 101 ~~~~~~~~~~~~Gll~a~~~~Ly~~gl~y-lp~St~sll~ss-ql~Ftaifs~~ilkeK~ 158 (383)
.-||-...++..|.++| +.|...+.| +|.=..+++.+. +.+++-++...+.|+--
T Consensus 284 ~aPrgIi~s~~i~~i~g---w~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~ 340 (550)
T KOG1289|consen 284 AAPRGIISSIAIGFILG---WIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGA 340 (550)
T ss_pred hccHHHHHHHHHHHHHH---HHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCce
Confidence 34576777777777755 456666666 554556666644 67788888887765543
No 156
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=22.02 E-value=3.3e+02 Score=28.33 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=17.7
Q ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHhccc
Q 043611 148 VFSVIIVKQKITFSNLNCVILLTLSSVLLALG 179 (383)
Q Consensus 148 ifs~~ilkeK~t~~~i~svvLltiG~vll~~~ 179 (383)
+.-+++-|=++..|.+..+++..+|..+++..
T Consensus 78 ~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~ 109 (402)
T PF02487_consen 78 IAPFFIHRVPYWIRILICVALSAAGMLLVAFS 109 (402)
T ss_pred HhHhhhhhccchHHHHHHHHHHHHHHhheeec
Confidence 33444445555666666666666665555543
No 157
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.72 E-value=87 Score=34.33 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcchhhhh
Q 043611 326 VKAVSTVLCAWGFCSYVYGMYVKLKL 351 (383)
Q Consensus 326 ~kiig~~L~l~G~~~yiy~~~~~~~k 351 (383)
.-.++++++++|+.=|.|+.|...|+
T Consensus 485 vl~vllvllVIAiiD~~~QR~~f~Kk 510 (646)
T PRK12773 485 FLIVGIILLAISIVDYLYQRYEYEES 510 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888899987755443
No 158
>PRK10734 putative calcium/sodium:proton antiporter; Provisional
Probab=20.83 E-value=1.4e+02 Score=29.81 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=9.7
Q ss_pred HHhCCcchhhhHHHHHHHH
Q 043611 317 VVYGDSFGGVKAVSTVLCA 335 (383)
Q Consensus 317 i~fgE~~~~~kiig~~L~l 335 (383)
+..+++++....+-+++..
T Consensus 118 ~~~~~~l~~~~g~~ll~~~ 136 (325)
T PRK10734 118 VLYDGQLSRSDGIFLLLLA 136 (325)
T ss_pred HHHCCcCcHHHHHHHHHHH
Confidence 3455667655544444443
No 159
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.62 E-value=37 Score=34.19 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=71.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHhhhhcC-Ccc
Q 043611 190 KSKYFIGFFCTVGAGLLFALYLPVMEMIYKKVYCYSMVMEMQLVMEIAATALATVGMASDGGYPEMKREAQTVYDK-GPV 268 (383)
Q Consensus 190 ~~~~~iG~~l~L~Aa~l~gl~~~l~q~~~kk~~~~~~vlemq~~~~l~a~~~~~vgl~~~g~~~~i~~e~~~~F~~-g~~ 268 (383)
.++..+|.++++.+++..|..+.+-++..+|... . |. -.++ ..+.- |+. -||
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----------~----------~~-ra~~-----gg~~y-l~~~~Ww 68 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----------S----------GL-RAGE-----GGYGY-LKEPLWW 68 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----------h----------cc-cccC-----CCcch-hhhHHHH
Confidence 3457899999999999999977777777777620 0 00 0011 11111 222 112
Q ss_pred hhhh-HHHHHHHHHHHHHhhhccceeecccchhhHHHhhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHH
Q 043611 269 VYCL-TIIGNVVTWQLCFMGTAGMVFLTSSLTGGISMTAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYV 342 (383)
Q Consensus 269 ~y~l-~l~~~av~wq~~~vg~vGlv~~~Ssl~asvv~~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yi 342 (383)
...+ ..++.+.++..+.....-++.-+ ..+..+...++|..+++|+++..-.+|-++++.|....+
T Consensus 69 ~G~ltm~vGei~NFaAYaFAPasLVtPL--------GAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 69 AGMLTMIVGEIANFAAYAFAPASLVTPL--------GALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HHHHHHHHHhHhhHHHHhhchHhhhccc--------hhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 2222 24555556655544432222222 334466678999999999999999999999996655543
Done!