Query 043611
Match_columns 383
No_of_seqs 197 out of 364
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.1 1.5E-05 5.2E-10 66.0 9.4 67 114-180 38-105 (110)
2 2i68_A Protein EMRE; transmemb 98.0 1.1E-05 3.6E-10 69.8 7.4 67 114-180 38-105 (137)
3 2i68_A Protein EMRE; transmemb 96.6 0.0055 1.9E-07 52.6 7.6 39 305-343 65-103 (137)
4 3b5d_A Multidrug transporter E 94.1 0.19 6.3E-06 41.1 7.9 48 296-343 52-103 (110)
5 3o7q_A L-fucose-proton symport 28.9 3.5E+02 0.012 24.9 18.3 27 36-62 155-182 (438)
6 2jp3_A FXYD domain-containing 21.1 61 0.0021 24.1 2.6 22 327-348 22-43 (67)
7 1pw4_A Glycerol-3-phosphate tr 17.0 6E+02 0.02 23.3 25.9 29 34-62 155-183 (451)
8 3l1l_A Arginine/agmatine antip 16.2 72 0.0025 30.6 2.7 22 327-348 410-431 (445)
9 2rdd_B UPF0092 membrane protei 15.3 1.4E+02 0.0049 19.1 3.1 16 339-354 15-30 (37)
10 2jo1_A Phospholemman; FXYD1, N 12.2 1.3E+02 0.0044 22.6 2.4 20 327-346 21-40 (72)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.08 E-value=1.5e-05 Score=65.96 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHH-HhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALL-LSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS 180 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll-~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~ 180 (383)
+.++....+|..+++++|.|+..-+ .+..++++++.+++++||++|+.++.|+++...|++++...+
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556677888999999999999777 899999999999999999999999999999999988887643
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.02 E-value=1.1e-05 Score=69.77 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHH-HhhhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhcccC
Q 043611 114 LLLGLNNLLFSWGNSYLPVSTSALL-LSSQLLFNLVFSVIIVKQKITFSNLNCVILLTLSSVLLALGS 180 (383)
Q Consensus 114 ll~a~~~~Ly~~gl~ylp~St~sll-~ssql~Ftaifs~~ilkeK~t~~~i~svvLltiG~vll~~~~ 180 (383)
+.++...++|..+++++|+|+..-+ ....+++++++++++++|++++.++.|+++..+|++++...+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4455667899999999999977777 899999999999999999999999999999999988887644
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.59 E-value=0.0055 Score=52.62 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 305 TAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 305 ~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
.+.+.++.++++++|||+++..+++|.++++.|+.....
T Consensus 65 ~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344555799999999999999999999999988877644
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=94.05 E-value=0.19 Score=41.08 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=36.6
Q ss_pred ccchhhHHH----hhHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHh
Q 043611 296 SSLTGGISM----TAILAMNVIAGVVVYGDSFGGVKAVSTVLCAWGFCSYVY 343 (383)
Q Consensus 296 Ssl~asvv~----~l~~pv~~ilAvi~fgE~~~~~kiig~~L~l~G~~~yiy 343 (383)
+..+.+++. .+.+..+.++++++|||+++..|++|..+++.|+.....
T Consensus 52 ~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 52 AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 334445542 244555799999999999999999999999988877543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=28.89 E-value=3.5e+02 Score=24.93 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhhHhhhhHhh-cCCC
Q 043611 36 LVTNYLCLFVGSVSASLLSKYYF-NHKG 62 (383)
Q Consensus 36 ~~~~~~~l~~g~~~~~Ll~r~y~-~~gg 62 (383)
..+.....-+|...++++..... ++++
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44555666677778888877766 5554
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=21.12 E-value=61 Score=24.10 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHhhcchh
Q 043611 327 KAVSTVLCAWGFCSYVYGMYVK 348 (383)
Q Consensus 327 kiig~~L~l~G~~~yiy~~~~~ 348 (383)
.+.+.++.+.|+.+.+-++-+-
T Consensus 22 LifA~vLfi~GI~iilS~kcrC 43 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCKC 43 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhhHHHHHHHHHHHHHcCcccc
Confidence 4566677777777776654433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=17.04 E-value=6e+02 Score=23.28 Aligned_cols=29 Identities=14% Similarity=-0.089 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhHhhcCCC
Q 043611 34 VLLVTNYLCLFVGSVSASLLSKYYFNHKG 62 (383)
Q Consensus 34 ~~~~~~~~~l~~g~~~~~Ll~r~y~~~gg 62 (383)
....+......+|...+|++...-.++.|
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555666777888888876555544
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=16.20 E-value=72 Score=30.57 Aligned_cols=22 Identities=14% Similarity=-0.189 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHhhcchh
Q 043611 327 KAVSTVLCAWGFCSYVYGMYVK 348 (383)
Q Consensus 327 kiig~~L~l~G~~~yiy~~~~~ 348 (383)
-+.|.++.+.|+..|.+.++.+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 4557777787888887654433
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=15.34 E-value=1.4e+02 Score=19.12 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=7.1
Q ss_pred HHHHhhcchhhhhHHh
Q 043611 339 CSYVYGMYVKLKLQEK 354 (383)
Q Consensus 339 ~~yiy~~~~~~~k~~~ 354 (383)
..|+.--.|..||.|+
T Consensus 15 ifYFl~iRPQ~Kr~K~ 30 (37)
T 2rdd_B 15 IFYFMILRPQQKRTKE 30 (37)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHH
Confidence 3454433444444443
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=12.23 E-value=1.3e+02 Score=22.59 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHhhcc
Q 043611 327 KAVSTVLCAWGFCSYVYGMY 346 (383)
Q Consensus 327 kiig~~L~l~G~~~yiy~~~ 346 (383)
.+.+.++.+.|+.+..-++-
T Consensus 21 LifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcc
Confidence 45666777777777666554
Done!