Query 043611
Match_columns 383
No_of_seqs 197 out of 364
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 11:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043611.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043611hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga7 f.35.1.1 (A:7-37,A:331 15.1 1.2E+02 0.0085 24.4 5.8 28 314-341 82-109 (199)
2 d1iwga8 f.35.1.1 (A:513-566,A: 13.7 3E+02 0.022 22.0 12.0 41 297-337 80-123 (222)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 8.0 70 0.0051 23.1 1.6 21 330-350 38-58 (100)
4 d1y5ic1 f.21.3.1 (C:1-225) Res 5.4 1.7E+02 0.013 23.8 2.9 27 326-352 93-119 (225)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 5.0 2.5E+02 0.018 19.7 3.3 19 275-293 41-59 (103)
6 d2e74g1 f.23.26.1 (G:9-35) Pet 5.0 2.9E+02 0.021 15.1 2.8 17 194-210 2-18 (27)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.7 1.5E+02 0.011 21.5 1.8 15 333-347 47-61 (107)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 3.5 9.6E+02 0.07 19.1 28.7 27 35-61 153-179 (447)
9 d1u19a_ f.13.1.2 (A:) Rhodopsi 3.1 9.9E+02 0.072 18.6 6.5 32 30-61 35-66 (348)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 3.0 4.5E+02 0.033 15.2 2.5 18 329-346 10-27 (34)
No 1
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.11 E-value=1.2e+02 Score=24.38 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=20.7
Q ss_pred HHHHHhCCcchhhhHHHHHHHHHHHHHH
Q 043611 314 AGVVVYGDSFGGVKAVSTVLCAWGFCSY 341 (383)
Q Consensus 314 lAvi~fgE~~~~~kiig~~L~l~G~~~y 341 (383)
....++|.+++....++.++++....-|
T Consensus 82 ~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 82 AVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 3344678899998888888888666655
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.68 E-value=3e+02 Score=22.02 Aligned_cols=41 Identities=10% Similarity=-0.035 Sum_probs=27.0
Q ss_pred cchhhHHHhhHHHHH---HHHHHHHhCCcchhhhHHHHHHHHHH
Q 043611 297 SLTGGISMTAILAMN---VIAGVVVYGDSFGGVKAVSTVLCAWG 337 (383)
Q Consensus 297 sl~asvv~~l~~pv~---~ilAvi~fgE~~~~~kiig~~L~l~G 337 (383)
|....++..+..|++ .+.+..+.|.+++....+|+++.+..
T Consensus 80 S~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 80 SWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp SSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 344455544556664 34555678999999888888886643
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.03 E-value=70 Score=23.09 Aligned_cols=21 Identities=5% Similarity=-0.005 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhcchhhh
Q 043611 330 STVLCAWGFCSYVYGMYVKLK 350 (383)
Q Consensus 330 g~~L~l~G~~~yiy~~~~~~~ 350 (383)
...+.+.|...|+.-+|.++|
T Consensus 38 ~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHhhhhhccC
Confidence 334445566666554554443
No 4
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=5.40 E-value=1.7e+02 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcchhhhhH
Q 043611 326 VKAVSTVLCAWGFCSYVYGMYVKLKLQ 352 (383)
Q Consensus 326 ~kiig~~L~l~G~~~yiy~~~~~~~k~ 352 (383)
...+++++++.|....+++++.+++++
T Consensus 93 ~g~i~g~l~liG~~~ll~RR~~~~~~r 119 (225)
T d1y5ic1 93 AGGASGVLCLIGGVLLLKRRLFSPRVR 119 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 345677888888888899888765543
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.05 E-value=2.5e+02 Score=19.67 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhcccee
Q 043611 275 IGNVVTWQLCFMGTAGMVF 293 (383)
Q Consensus 275 ~~~av~wq~~~vg~vGlv~ 293 (383)
.++++-|.+.-+..+|+.=
T Consensus 41 ~~~aly~~~vT~tTvGYGD 59 (103)
T d1r3jc_ 41 YPRALWWSVETATTVGYGD 59 (103)
T ss_dssp HHHHHHHHHHHHTTCCCSS
T ss_pred hhhhhhhheeeecccccCc
Confidence 4466777777777777743
No 6
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.01 E-value=2.9e+02 Score=15.05 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 043611 194 FIGFFCTVGAGLLFALY 210 (383)
Q Consensus 194 ~iG~~l~L~Aa~l~gl~ 210 (383)
.+|.+.+-.|..+|+.|
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 46777777788888765
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.70 E-value=1.5e+02 Score=21.50 Aligned_cols=15 Identities=0% Similarity=-0.184 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhcch
Q 043611 333 LCAWGFCSYVYGMYV 347 (383)
Q Consensus 333 L~l~G~~~yiy~~~~ 347 (383)
+.+.|...|..-+|.
T Consensus 47 ~~V~~~~~~~~~~~r 61 (107)
T d3ehbb2 47 IFVCLLLLICIVRFN 61 (107)
T ss_dssp HHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHhhhhh
Confidence 334555665444443
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.55 E-value=9.6e+02 Score=19.13 Aligned_cols=27 Identities=15% Similarity=-0.060 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhHhhhhHhhcCC
Q 043611 35 LLVTNYLCLFVGSVSASLLSKYYFNHK 61 (383)
Q Consensus 35 ~~~~~~~~l~~g~~~~~Ll~r~y~~~g 61 (383)
...+......+|...++++.-.-....
T Consensus 153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 153 IVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred cccccccccchhhhhhhhhhhhHhhhh
Confidence 334444555667777777666555543
No 9
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.15 E-value=9.9e+02 Score=18.56 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=22.0
Q ss_pred cchHHHHHHHHHHHHHhhhhhHhhhhHhhcCC
Q 043611 30 KSYLVLLVTNYLCLFVGSVSASLLSKYYFNHK 61 (383)
Q Consensus 30 ~~~~~~~~~~~~~l~~g~~~~~Ll~r~y~~~g 61 (383)
..+.++.+++.++.++|-.++.++--..+.+.
T Consensus 35 ~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k 66 (348)
T d1u19a_ 35 WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHK 66 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeehhhhccC
Confidence 34456777777777888888887766665543
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.00 E-value=4.5e+02 Score=15.16 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 043611 329 VSTVLCAWGFCSYVYGMY 346 (383)
Q Consensus 329 ig~~L~l~G~~~yiy~~~ 346 (383)
++...++.=+..++|+.|
T Consensus 10 v~G~~vi~~vG~FfYGsY 27 (34)
T d2axtj1 10 VAGMGVIVIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHhheeeeeeeee
Done!