Query 043612
Match_columns 327
No_of_seqs 289 out of 1479
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03091 hypothetical protein; 100.0 2.6E-34 5.6E-39 283.7 9.3 115 1-115 1-115 (459)
2 PLN03212 Transcription repress 100.0 4.4E-33 9.5E-38 258.4 10.6 113 3-115 14-126 (249)
3 KOG0048 Transcription factor, 100.0 1.3E-29 2.7E-34 235.8 9.1 104 12-115 7-110 (238)
4 KOG0048 Transcription factor, 99.8 2.5E-20 5.5E-25 173.5 4.2 96 64-175 6-103 (238)
5 KOG0049 Transcription factor, 99.8 3.3E-19 7.1E-24 182.3 5.0 114 1-115 347-464 (939)
6 KOG0049 Transcription factor, 99.8 2.8E-19 6E-24 182.9 3.2 141 12-167 303-447 (939)
7 PLN03212 Transcription repress 99.7 1.4E-18 3E-23 161.9 4.1 96 63-174 21-118 (249)
8 PLN03091 hypothetical protein; 99.7 2.2E-17 4.8E-22 164.1 4.5 96 63-174 10-107 (459)
9 PF13921 Myb_DNA-bind_6: Myb-l 99.6 3.7E-16 8.1E-21 115.4 2.5 60 17-78 1-60 (60)
10 KOG0050 mRNA splicing protein 99.5 1.1E-14 2.3E-19 146.6 2.3 105 12-118 5-109 (617)
11 COG5147 REB1 Myb superfamily p 99.5 2.6E-14 5.6E-19 145.6 5.0 108 9-117 15-122 (512)
12 PF13921 Myb_DNA-bind_6: Myb-l 99.3 4.7E-13 1E-17 98.8 3.2 60 70-143 1-60 (60)
13 PF00249 Myb_DNA-binding: Myb- 99.3 1.2E-12 2.6E-17 93.1 5.2 46 67-112 1-48 (48)
14 KOG0051 RNA polymerase I termi 99.3 7.9E-13 1.7E-17 136.3 4.2 103 13-118 383-513 (607)
15 PF00249 Myb_DNA-binding: Myb- 99.3 3E-13 6.4E-18 96.3 -0.3 48 14-61 1-48 (48)
16 smart00717 SANT SANT SWI3, AD 99.1 9.5E-11 2.1E-15 80.7 6.0 47 67-113 1-48 (49)
17 KOG0051 RNA polymerase I termi 99.0 2.9E-10 6.2E-15 117.6 6.5 121 12-148 306-452 (607)
18 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 5.6E-10 1.2E-14 75.8 5.7 43 69-111 1-44 (45)
19 smart00717 SANT SANT SWI3, AD 99.0 2E-10 4.4E-15 79.0 1.3 48 14-62 1-48 (49)
20 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 1.1E-09 2.3E-14 74.4 1.0 44 16-60 1-44 (45)
21 COG5147 REB1 Myb superfamily p 98.6 2.4E-08 5.3E-13 102.3 3.4 99 64-177 17-116 (512)
22 TIGR01557 myb_SHAQKYF myb-like 97.8 1E-05 2.2E-10 60.4 1.6 49 13-61 2-54 (57)
23 KOG0050 mRNA splicing protein 97.7 9.8E-06 2.1E-10 82.8 0.8 95 65-175 5-100 (617)
24 KOG0457 Histone acetyltransfer 97.5 3E-05 6.6E-10 77.9 0.9 50 12-62 70-119 (438)
25 KOG0457 Histone acetyltransfer 97.3 0.00046 1E-08 69.6 6.5 52 64-115 69-121 (438)
26 TIGR01557 myb_SHAQKYF myb-like 97.2 0.00098 2.1E-08 49.7 5.7 45 67-111 3-53 (57)
27 PF13837 Myb_DNA-bind_4: Myb/S 96.9 0.0007 1.5E-08 53.0 2.5 54 67-120 1-72 (90)
28 COG5259 RSC8 RSC chromatin rem 96.8 0.0014 3.1E-08 66.7 5.0 45 67-111 279-323 (531)
29 KOG1279 Chromatin remodeling f 96.7 0.0021 4.5E-08 66.6 5.3 47 65-111 251-297 (506)
30 COG5259 RSC8 RSC chromatin rem 96.6 0.00059 1.3E-08 69.4 0.5 46 13-60 278-323 (531)
31 TIGR02894 DNA_bind_RsfA transc 96.6 0.0022 4.7E-08 57.2 3.8 48 66-114 3-57 (161)
32 PF08914 Myb_DNA-bind_2: Rap1 96.5 0.0035 7.6E-08 48.0 4.2 49 67-115 2-60 (65)
33 PF13325 MCRS_N: N-terminal re 96.3 0.0063 1.4E-07 56.1 4.9 96 16-113 1-127 (199)
34 KOG1279 Chromatin remodeling f 96.2 0.0018 3.8E-08 67.1 1.1 47 12-60 251-297 (506)
35 PF13873 Myb_DNA-bind_5: Myb/S 96.0 0.0091 2E-07 46.0 4.0 51 67-117 2-74 (78)
36 PF08914 Myb_DNA-bind_2: Rap1 95.9 0.0015 3.3E-08 49.9 -0.7 52 14-65 2-61 (65)
37 PF13837 Myb_DNA-bind_4: Myb/S 95.8 0.0015 3.3E-08 51.1 -1.1 48 14-61 1-64 (90)
38 TIGR02894 DNA_bind_RsfA transc 95.5 0.0023 5E-08 57.0 -1.3 50 12-63 2-57 (161)
39 COG5114 Histone acetyltransfer 95.2 0.0046 1E-07 60.6 -0.4 50 12-62 61-110 (432)
40 PRK13923 putative spore coat p 94.9 0.024 5.1E-07 51.2 3.3 49 65-114 3-58 (170)
41 COG5114 Histone acetyltransfer 94.2 0.044 9.5E-07 53.9 3.7 47 67-113 63-110 (432)
42 PLN03142 Probable chromatin-re 94.0 0.086 1.9E-06 59.2 5.8 101 15-116 825-988 (1033)
43 PRK13923 putative spore coat p 93.7 0.013 2.9E-07 52.8 -1.0 50 11-62 2-57 (170)
44 PF13873 Myb_DNA-bind_5: Myb/S 93.4 0.012 2.6E-07 45.3 -1.6 49 13-61 1-69 (78)
45 PF12776 Myb_DNA-bind_3: Myb/S 91.4 0.38 8.3E-06 37.9 4.8 47 69-115 1-65 (96)
46 PF09111 SLIDE: SLIDE; InterP 91.3 0.25 5.5E-06 42.0 3.8 54 64-117 46-115 (118)
47 KOG4282 Transcription factor G 91.2 0.21 4.4E-06 49.0 3.7 56 67-122 54-123 (345)
48 COG5118 BDP1 Transcription ini 91.1 0.31 6.8E-06 49.1 4.8 43 68-110 366-408 (507)
49 KOG2656 DNA methyltransferase 89.7 0.13 2.7E-06 51.9 0.7 82 36-118 75-187 (445)
50 PF13325 MCRS_N: N-terminal re 80.8 1.5 3.2E-05 40.7 3.0 77 69-146 1-87 (199)
51 PF09111 SLIDE: SLIDE; InterP 79.4 1.1 2.3E-05 38.2 1.5 35 11-45 46-83 (118)
52 KOG1194 Predicted DNA-binding 79.4 3.7 8E-05 42.5 5.6 46 66-111 186-231 (534)
53 PF08281 Sigma70_r4_2: Sigma-7 79.3 3 6.5E-05 29.4 3.7 41 72-113 12-52 (54)
54 KOG4282 Transcription factor G 77.9 0.73 1.6E-05 45.2 0.1 48 14-61 54-113 (345)
55 COG5118 BDP1 Transcription ini 75.7 1.4 3.1E-05 44.5 1.4 48 10-59 361-408 (507)
56 PF11626 Rap1_C: TRF2-interact 74.3 1.8 3.8E-05 34.6 1.4 30 10-42 43-80 (87)
57 PF13404 HTH_AsnC-type: AsnC-t 71.4 8 0.00017 26.9 4.0 38 73-111 3-41 (42)
58 PRK11179 DNA-binding transcrip 70.5 7.8 0.00017 33.6 4.7 43 72-115 8-51 (153)
59 PF12776 Myb_DNA-bind_3: Myb/S 63.2 2.3 4.9E-05 33.4 -0.1 44 16-59 1-60 (96)
60 PRK11169 leucine-responsive tr 63.1 11 0.00023 33.2 4.1 44 72-116 13-57 (164)
61 PF04545 Sigma70_r4: Sigma-70, 61.5 11 0.00025 26.2 3.3 42 73-115 7-48 (50)
62 PF07750 GcrA: GcrA cell cycle 60.1 12 0.00026 33.4 3.9 41 69-110 2-42 (162)
63 TIGR02985 Sig70_bacteroi1 RNA 58.7 12 0.00027 31.0 3.6 39 78-117 121-159 (161)
64 KOG4468 Polycomb-group transcr 57.6 9.4 0.0002 40.9 3.2 52 67-118 88-149 (782)
65 KOG4167 Predicted DNA-binding 57.5 4 8.6E-05 44.5 0.4 43 14-58 619-661 (907)
66 KOG2009 Transcription initiati 56.5 9.8 0.00021 40.5 3.1 45 66-110 408-452 (584)
67 smart00595 MADF subfamily of S 55.3 10 0.00022 29.4 2.3 26 89-115 30-55 (89)
68 PF11626 Rap1_C: TRF2-interact 55.2 12 0.00026 29.8 2.8 17 63-79 43-59 (87)
69 KOG4167 Predicted DNA-binding 52.9 21 0.00046 39.2 4.9 48 67-114 619-669 (907)
70 PRK11179 DNA-binding transcrip 51.6 4.6 0.0001 35.0 -0.2 46 19-66 8-53 (153)
71 KOG2656 DNA methyltransferase 48.9 8 0.00017 39.4 1.0 48 12-60 128-180 (445)
72 PF13404 HTH_AsnC-type: AsnC-t 48.6 4 8.6E-05 28.4 -0.9 38 20-59 3-40 (42)
73 PRK11169 leucine-responsive tr 47.6 4.5 9.8E-05 35.5 -0.9 46 19-66 13-58 (164)
74 PF11035 SnAPC_2_like: Small n 46.2 44 0.00095 33.3 5.6 44 67-110 21-68 (344)
75 cd08319 Death_RAIDD Death doma 42.2 38 0.00082 27.0 3.7 30 75-105 2-31 (83)
76 PF01388 ARID: ARID/BRIGHT DNA 41.5 54 0.0012 25.6 4.6 36 77-112 40-88 (92)
77 TIGR02937 sigma70-ECF RNA poly 41.1 36 0.00078 27.2 3.6 36 81-117 121-156 (158)
78 PF11035 SnAPC_2_like: Small n 40.3 52 0.0011 32.9 5.1 93 14-120 21-134 (344)
79 cd06171 Sigma70_r4 Sigma70, re 38.9 72 0.0016 20.8 4.4 41 70-112 11-51 (55)
80 cd08803 Death_ank3 Death domai 37.3 57 0.0012 26.0 4.1 30 75-105 4-33 (84)
81 KOG1194 Predicted DNA-binding 36.9 47 0.001 34.7 4.3 51 69-120 472-522 (534)
82 smart00344 HTH_ASNC helix_turn 36.2 75 0.0016 25.2 4.7 41 73-114 3-44 (108)
83 KOG4329 DNA-binding protein [G 35.5 59 0.0013 33.2 4.7 43 68-110 278-321 (445)
84 PLN03142 Probable chromatin-re 35.3 36 0.00078 38.9 3.6 83 69-151 826-945 (1033)
85 PF07638 Sigma70_ECF: ECF sigm 35.3 46 0.001 29.5 3.6 39 76-115 141-179 (185)
86 PF04504 DUF573: Protein of un 34.2 49 0.0011 27.1 3.3 71 13-84 3-94 (98)
87 PF10545 MADF_DNA_bdg: Alcohol 33.9 31 0.00068 25.7 2.0 28 89-116 29-57 (85)
88 smart00501 BRIGHT BRIGHT, ARID 31.5 87 0.0019 24.7 4.3 38 77-114 36-86 (93)
89 cd08317 Death_ank Death domain 31.2 60 0.0013 25.4 3.3 30 75-105 4-33 (84)
90 PRK09652 RNA polymerase sigma 30.9 61 0.0013 27.4 3.6 34 83-117 141-174 (182)
91 cd08804 Death_ank2 Death domai 28.3 83 0.0018 24.9 3.7 30 75-105 4-33 (84)
92 PF09197 Rap1-DNA-bind: Rap1, 28.3 1.3E+02 0.0027 25.4 4.8 46 69-114 1-77 (105)
93 PF07750 GcrA: GcrA cell cycle 27.9 30 0.00065 30.9 1.1 34 16-52 2-35 (162)
94 KOG2009 Transcription initiati 27.6 35 0.00077 36.5 1.8 48 9-58 404-451 (584)
95 PF04504 DUF573: Protein of un 27.6 80 0.0017 25.8 3.5 48 68-115 5-65 (98)
96 PRK04217 hypothetical protein; 27.5 95 0.0021 26.1 4.0 49 68-118 41-89 (110)
97 TIGR02939 RpoE_Sigma70 RNA pol 27.2 46 0.001 28.7 2.2 32 86-118 154-185 (190)
98 PRK11924 RNA polymerase sigma 27.1 64 0.0014 27.2 3.0 33 84-117 139-171 (179)
99 PRK09643 RNA polymerase sigma 26.8 64 0.0014 28.5 3.1 34 84-118 148-181 (192)
100 COG1522 Lrp Transcriptional re 26.6 1.2E+02 0.0027 25.3 4.7 43 72-115 7-50 (154)
101 PF09420 Nop16: Ribosome bioge 26.2 1.3E+02 0.0028 26.6 4.9 44 66-109 113-160 (164)
102 KOG0384 Chromodomain-helicase 26.2 31 0.00067 40.0 1.1 77 13-96 1132-1209(1373)
103 PRK09641 RNA polymerase sigma 25.9 64 0.0014 27.8 2.8 32 85-117 151-182 (187)
104 TIGR02943 Sig70_famx1 RNA poly 25.9 67 0.0014 28.3 3.0 35 83-118 144-178 (188)
105 PRK12532 RNA polymerase sigma 25.3 59 0.0013 28.6 2.6 40 85-125 151-191 (195)
106 cd08318 Death_NMPP84 Death dom 25.2 1.1E+02 0.0023 24.3 3.7 27 78-105 10-36 (86)
107 PRK09637 RNA polymerase sigma 24.3 80 0.0017 27.7 3.2 33 84-117 120-152 (181)
108 PRK09047 RNA polymerase factor 24.0 79 0.0017 26.5 3.0 33 85-118 121-153 (161)
109 PRK12531 RNA polymerase sigma 23.9 79 0.0017 27.8 3.1 33 85-118 156-188 (194)
110 TIGR02952 Sig70_famx2 RNA poly 23.8 90 0.002 26.3 3.3 32 85-117 137-168 (170)
111 PRK11923 algU RNA polymerase s 23.8 66 0.0014 28.1 2.6 32 86-118 154-185 (193)
112 PF02954 HTH_8: Bacterial regu 23.7 1.8E+02 0.0038 19.7 4.2 33 73-106 5-37 (42)
113 PRK09649 RNA polymerase sigma 23.7 1.1E+02 0.0024 26.7 4.0 32 85-117 145-176 (185)
114 PRK06759 RNA polymerase factor 23.4 1.1E+02 0.0025 25.3 3.9 31 85-116 121-151 (154)
115 TIGR02948 SigW_bacill RNA poly 23.3 70 0.0015 27.5 2.6 31 86-117 152-182 (187)
116 PRK12530 RNA polymerase sigma 23.2 77 0.0017 27.9 2.9 33 85-118 149-181 (189)
117 PRK09648 RNA polymerase sigma 23.0 85 0.0018 27.3 3.1 33 84-117 153-185 (189)
118 KOG4468 Polycomb-group transcr 23.0 30 0.00066 37.2 0.3 48 13-61 87-143 (782)
119 TIGR02954 Sig70_famx3 RNA poly 22.9 84 0.0018 26.8 3.0 32 85-117 134-165 (169)
120 smart00005 DEATH DEATH domain, 21.9 1.1E+02 0.0024 23.3 3.2 31 74-105 4-35 (88)
121 cd08311 Death_p75NR Death doma 21.7 1E+02 0.0022 24.2 3.0 32 72-105 2-33 (77)
122 cd08777 Death_RIP1 Death Domai 21.6 1.2E+02 0.0026 24.2 3.4 30 76-106 3-32 (86)
123 PRK12516 RNA polymerase sigma 21.3 79 0.0017 28.0 2.6 37 81-118 127-163 (187)
124 PRK12514 RNA polymerase sigma 21.0 96 0.0021 26.7 3.0 33 85-118 144-176 (179)
125 PRK09642 RNA polymerase sigma 20.9 1.1E+02 0.0024 25.7 3.3 32 85-117 121-152 (160)
126 PF13384 HTH_23: Homeodomain-l 20.7 1.4E+02 0.003 20.3 3.2 31 73-105 5-35 (50)
127 cd08805 Death_ank1 Death domai 20.6 1.4E+02 0.003 23.9 3.6 28 75-103 4-31 (84)
128 COG1522 Lrp Transcriptional re 20.4 29 0.00063 29.3 -0.4 45 19-65 7-51 (154)
129 PRK12515 RNA polymerase sigma 20.2 1.2E+02 0.0025 26.6 3.4 32 85-117 146-177 (189)
130 PRK12512 RNA polymerase sigma 20.1 1E+02 0.0022 26.6 3.0 32 85-117 146-177 (184)
No 1
>PLN03091 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=283.69 Aligned_cols=115 Identities=73% Similarity=1.322 Sum_probs=111.7
Q ss_pred CCCCCccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHH
Q 043612 1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIE 80 (327)
Q Consensus 1 mgR~~c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~ 80 (327)
|||++||.|++++|++||+|||++|+++|++||.++|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++
T Consensus 1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe 80 (459)
T PLN03091 1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80 (459)
T ss_pred CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998768999999999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 81 LHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 81 lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
++++||++|++||+.|+|||+++||+||+.++++.
T Consensus 81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877763
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=100.00 E-value=4.4e-33 Score=258.45 Aligned_cols=113 Identities=52% Similarity=1.014 Sum_probs=108.7
Q ss_pred CCCccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHH
Q 043612 3 HHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELH 82 (327)
Q Consensus 3 R~~c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV 82 (327)
|.+||.|..++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++
T Consensus 14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~ 93 (249)
T PLN03212 14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH 93 (249)
T ss_pred CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence 56899999999999999999999999999999899999999866899999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 83 SILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 83 ~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
.+||++|+.||+.|+|||+++||+||..+++..
T Consensus 94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999887764
No 3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.96 E-value=1.3e-29 Score=235.79 Aligned_cols=104 Identities=54% Similarity=0.952 Sum_probs=99.9
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ 91 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~ 91 (327)
+.||+||+|||++|+++|++||.++|..||+.+|.+|++++||.||.++|+|+++||.||+|||++|+++++.+|++|+.
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~ 86 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL 86 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHhhhhhhcccc
Q 043612 92 IARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 92 IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
||+.|||||++++|+.|...+++.
T Consensus 87 IA~~LPGRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 87 IAGRLPGRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred HHhhCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999998876553
No 4
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.80 E-value=2.5e-20 Score=173.49 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=88.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCch
Q 043612 64 DLKRGSFSPQEAALIIELHSILG-NRWAQIARHLP-GRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPN 141 (327)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp-gRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~ 141 (327)
.+.||+||.|||++|+++|++|| ++|..||+.++ +|++++|| .||+|+|+|+++++.||.+|+.
T Consensus 6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCR--------------lRW~NyLrP~ikrg~fT~eEe~ 71 (238)
T KOG0048|consen 6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCR--------------LRWTNYLRPDLKRGNFSDEEED 71 (238)
T ss_pred cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHH--------------HHhhcccCCCccCCCCCHHHHH
Confidence 45579999999999999999999 56999999998 99999999 8899999999999999999999
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhhc
Q 043612 142 LILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNL 175 (327)
Q Consensus 142 lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~n 175 (327)
+|+++|+.+|..| ...|..||| +|+++||||=
T Consensus 72 ~Ii~lH~~~GNrW-s~IA~~LPG-RTDNeIKN~W 103 (238)
T KOG0048|consen 72 LIIKLHALLGNRW-SLIAGRLPG-RTDNEVKNHW 103 (238)
T ss_pred HHHHHHHHHCcHH-HHHHhhCCC-cCHHHHHHHH
Confidence 9999999988885 555999999 7779999995
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.76 E-value=3.3e-19 Score=182.33 Aligned_cols=114 Identities=26% Similarity=0.436 Sum_probs=104.7
Q ss_pred CCCCCccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHH
Q 043612 1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIE 80 (327)
Q Consensus 1 mgR~~c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~ 80 (327)
+||+.....|.+++|.||.+||.+|..+|.+||.++|-+|-..++ +|+..|||+||.+.|+...+++.||-.||+.|+.
T Consensus 347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~ 425 (939)
T KOG0049|consen 347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY 425 (939)
T ss_pred hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence 588889999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHhC-CCHHHHHhhCCCCCHHH---HHhhhhhhcccc
Q 043612 81 LHSILG-NRWAQIARHLPGRTDNE---KKLMSHEIVPAL 115 (327)
Q Consensus 81 lV~~~G-~kW~~IA~~lpgRT~~q---cK~Rw~~ilr~~ 115 (327)
+|.+|| ++|.+||.+||.||.+| ||.|+..+..++
T Consensus 426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl 464 (939)
T KOG0049|consen 426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRL 464 (939)
T ss_pred HHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHH
Confidence 999999 78999999999999965 555555444443
No 6
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.75 E-value=2.8e-19 Score=182.85 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=125.4
Q ss_pred CcccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNR 88 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~k 88 (327)
+++..||.|||.+|+.+|+.... .+|++|-..|+ ||+..|...||.+.|+|++++|+||.+||.+|+.+|.+||.+
T Consensus 303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k 381 (939)
T KOG0049|consen 303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK 381 (939)
T ss_pred HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence 55789999999999999998743 47999999999 999999999999999999999999999999999999999965
Q ss_pred -HHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhhhhhccCCCCCCCCCCCCCCCCC
Q 043612 89 -WAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFD 167 (327)
Q Consensus 89 -W~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~~~~~~g~~~~~~pa~~lp~~~~ 167 (327)
|.+|-..+|||++.|||.||... |+-+.+...|+-.||.-|+.++.+||--.|..-+..||..+.
T Consensus 382 dw~k~R~~vPnRSdsQcR~RY~nv--------------L~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~ 447 (939)
T KOG0049|consen 382 DWAKVRQAVPNRSDSQCRERYTNV--------------LNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTS 447 (939)
T ss_pred chhhHHHhcCCccHHHHHHHHHHH--------------HHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccch
Confidence 99999999999999999666654 444455578888999999999999997777777888888765
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.73 E-value=1.4e-18 Score=161.90 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=85.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC-CCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCc
Q 043612 63 PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHL-PGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNP 140 (327)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~l-pgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd 140 (327)
+.+++++||+|||++|+++|++|| .+|..||+.+ ++||++||| +||.|+|+|.+.+.+||.+||
T Consensus 21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCR--------------eRW~N~L~P~I~kgpWT~EED 86 (249)
T PLN03212 21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCR--------------LRWMNYLRPSVKRGGITSDEE 86 (249)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHH--------------HHHHHhhchhcccCCCChHHH
Confidence 478899999999999999999999 5799999998 699999999 888899999999999999999
Q ss_pred hhhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612 141 NLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN 174 (327)
Q Consensus 141 ~lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~ 174 (327)
.+|+.++..+|..| ...+..+||++ .+.++|.
T Consensus 87 ~lLlel~~~~GnKW-s~IAk~LpGRT-DnqIKNR 118 (249)
T PLN03212 87 DLILRLHRLLGNRW-SLIAGRIPGRT-DNEIKNY 118 (249)
T ss_pred HHHHHHHHhccccH-HHHHhhcCCCC-HHHHHHH
Confidence 99999999999764 55588999955 5677664
No 8
>PLN03091 hypothetical protein; Provisional
Probab=99.67 E-value=2.2e-17 Score=164.06 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=84.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC-CCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCc
Q 043612 63 PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHL-PGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNP 140 (327)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~l-pgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd 140 (327)
..++|++||+|||++|+++|.+|| .+|..||+.+ +||+++||| +||.|+|+|.+.+.+||.+||
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCR--------------ERW~NyLdP~IkKgpWT~EED 75 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCR--------------LRWINYLRPDLKRGTFSQQEE 75 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHh--------------HHHHhccCCcccCCCCCHHHH
Confidence 578999999999999999999999 5799999988 599999999 788899999999999999999
Q ss_pred hhhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612 141 NLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN 174 (327)
Q Consensus 141 ~lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~ 174 (327)
.+|+.+++.+|..|..+ +..|+||+ .+.|+|.
T Consensus 76 ~lLLeL~k~~GnKWskI-Ak~LPGRT-DnqIKNR 107 (459)
T PLN03091 76 NLIIELHAVLGNRWSQI-AAQLPGRT-DNEIKNL 107 (459)
T ss_pred HHHHHHHHHhCcchHHH-HHhcCCCC-HHHHHHH
Confidence 99999999999865554 88999955 5556653
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.59 E-value=3.7e-16 Score=115.45 Aligned_cols=60 Identities=42% Similarity=0.899 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHH
Q 043612 17 WSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALI 78 (327)
Q Consensus 17 WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~L 78 (327)
||+|||++|+++|.+||. +|..||+.|+ .|++.||+.||.+.|.+.+++++||.+||++|
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 999999999999999995 7999999997 89999999999999999999999999999987
No 10
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.1e-14 Score=146.58 Aligned_cols=105 Identities=27% Similarity=0.591 Sum_probs=99.2
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ 91 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~ 91 (327)
++.|.|+..||+.|..+|.+||...|.+|++.+. .++++||+.||..+++|.+++..|+.|||++|+.+...+...|..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt 83 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT 83 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence 5678999999999999999999999999999998 889999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 92 IARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 92 IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
||..| |||+.||-.||..++-...+.
T Consensus 84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~ 109 (617)
T KOG0050|consen 84 IADIM-GRTSQQCLERYNNLLDVYVSY 109 (617)
T ss_pred HHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence 99999 999999999999988765443
No 11
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.47 E-value=2.6e-14 Score=145.62 Aligned_cols=108 Identities=32% Similarity=0.485 Sum_probs=102.6
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 043612 9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNR 88 (327)
Q Consensus 9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~k 88 (327)
..+++.|.|+..||+.|..+|++||..+|..||..+. .|+++||+.||.++++|.++++.|+.|||+.|+.+..++|..
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ 93 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence 3567889999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 89 WAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 89 W~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
|+.||..+++||..+|.+||...+....+
T Consensus 94 wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 94 WSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 99999999999999999999988777665
No 12
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.35 E-value=4.7e-13 Score=98.84 Aligned_cols=60 Identities=25% Similarity=0.326 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhh
Q 043612 70 FSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLI 143 (327)
Q Consensus 70 WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI 143 (327)
||+|||++|+++|.+||.+|.+||+.|+.||..+|+.||... |.|.+++.+|+.+|+..|
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~--------------l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNH--------------LRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHT--------------TSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHH--------------CcccccCCCcCHHHHhcC
Confidence 999999999999999999999999999669999999888762 345567788998887654
No 13
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.35 E-value=1.2e-12 Score=93.13 Aligned_cols=46 Identities=26% Similarity=0.599 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC-HHHHHhhCC-CCCHHHHHhhhhhhc
Q 043612 67 RGSFSPQEAALIIELHSILGNR-WAQIARHLP-GRTDNEKKLMSHEIV 112 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~k-W~~IA~~lp-gRT~~qcK~Rw~~il 112 (327)
|++||.|||++|+++|.+||.+ |..||..|+ |||..||+.||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999998763
No 14
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.32 E-value=7.9e-13 Score=136.26 Aligned_cols=103 Identities=26% Similarity=0.489 Sum_probs=91.9
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCC--CCCCCCHHHHHHHHHHHH-------
Q 043612 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDL--KRGSFSPQEAALIIELHS------- 83 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~l--kkg~WT~EED~~Ll~lV~------- 83 (327)
.+|+||+||++.|..++.++| ++|..|++.|+ |.+..|++||+++...+- +++.||.||.+.|+++|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~ 459 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL 459 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999 46999999997 999999999999999885 899999999999999995
Q ss_pred Hh-------------------CCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 84 IL-------------------GNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 84 ~~-------------------G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
++ +-.|..|++.+..|+..|||..|..++..-...
T Consensus 460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n 513 (607)
T KOG0051|consen 460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN 513 (607)
T ss_pred cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence 23 124999999999999999999999987764443
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.30 E-value=3e-13 Score=96.31 Aligned_cols=48 Identities=44% Similarity=0.806 Sum_probs=43.3
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecc
Q 043612 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L 61 (327)
|++||+|||++|+++|.+||.++|..||+.|+.+||+.||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998779999999988999999999998764
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.14 E-value=9.5e-11 Score=80.69 Aligned_cols=47 Identities=34% Similarity=0.676 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612 67 RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVP 113 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr 113 (327)
+++||++||.+|+.++.+|| .+|..||..|++||+.+|+.||..+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999 999999999999999999999998754
No 17
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.03 E-value=2.9e-10 Score=117.59 Aligned_cols=121 Identities=23% Similarity=0.240 Sum_probs=100.1
Q ss_pred CcccCCCHHHHHHHHHHHHHhCC---------------C--------Cccccccccccccccccccc---cceecccCCC
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGH---------------G--------CWSSVPKHAGLQRCGKSCRL---RWINYLRPDL 65 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~---------------~--------nW~~IA~~l~~gRt~~QCr~---Rw~~~L~p~l 65 (327)
++-+.|+.+||++|.+.|..|-. . -|..|...|+ -|+...... |=.+.|..
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~-- 382 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN-- 382 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc--
Confidence 34489999999999999998811 1 1567778888 588888766 44444544
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhh
Q 043612 66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILN 145 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~ 145 (327)
++|.||+||++.|..+|.++|+.|..|++.| ||.+..||.||+.++....+ ..+..|+.+|...|+.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~------------~~r~~Ws~eEe~~Llk 449 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSK------------RNRGAWSIEEEEKLLK 449 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccc------------cccCcchHHHHHHHHH
Confidence 8999999999999999999999999999999 99999999999998887654 3568999999999988
Q ss_pred hhh
Q 043612 146 SHQ 148 (327)
Q Consensus 146 ~~~ 148 (327)
.+.
T Consensus 450 ~V~ 452 (607)
T KOG0051|consen 450 TVN 452 (607)
T ss_pred HHH
Confidence 773
No 18
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.03 E-value=5.6e-10 Score=75.77 Aligned_cols=43 Identities=30% Similarity=0.601 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612 69 SFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEI 111 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~i 111 (327)
+||.+||..|++++.++| .+|..||+.|++||..+|+.||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 8999999999999999999999865
No 19
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.95 E-value=2e-10 Score=79.00 Aligned_cols=48 Identities=42% Similarity=0.868 Sum_probs=44.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceeccc
Q 043612 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR 62 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~ 62 (327)
++.||++||++|+.++..||..+|..||..++ +|++.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence 47899999999999999999667999999999 9999999999987654
No 20
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.82 E-value=1.1e-09 Score=74.38 Aligned_cols=44 Identities=41% Similarity=0.806 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612 16 LWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60 (327)
Q Consensus 16 ~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~ 60 (327)
.||.+||+.|+.++.++|..+|..||+.++ +|++.+|+.||.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence 599999999999999999778999999999 89999999999764
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.59 E-value=2.4e-08 Score=102.32 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=88.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchh
Q 043612 64 DLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNL 142 (327)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~l 142 (327)
..+.|.|+..||+.|..+|++|| ++|+.||..|.-|++++|+ .||+++++|.+++..|+.+|+..
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~--------------~rw~~~lnp~lk~~~~~~eed~~ 82 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSS--------------NRWNNHLNPQLKKKNWSEEEDEQ 82 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhccccccccc--------------chhhhhhchhcccccccHHHHHH
Confidence 45678999999999999999999 6799999999889999999 77789999999999999999999
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCHHHHhhhccC
Q 043612 143 ILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNLSN 177 (327)
Q Consensus 143 I~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~n~n 177 (327)
|+.+....|..+. ..+..+++++.++.+++|++.
T Consensus 83 li~l~~~~~~~ws-tia~~~d~rt~~~~~ery~~~ 116 (512)
T COG5147 83 LIDLDKELGTQWS-TIADYKDRRTAQQCVERYVNT 116 (512)
T ss_pred HHHHHHhcCchhh-hhccccCccchHHHHHHHHHH
Confidence 9999988777754 448999988999999998754
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.78 E-value=1e-05 Score=60.39 Aligned_cols=49 Identities=12% Similarity=0.298 Sum_probs=43.3
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-ccccccccceecc
Q 043612 13 KRGLWSPEEDEKLINYVTTYGHGCW---SSVPKHAGLQR-CGKSCRLRWINYL 61 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~kyg~~nW---~~IA~~l~~gR-t~~QCr~Rw~~~L 61 (327)
++-.||+||.++++++|+.+|.++| +.|++.|...| |..||+.+.+++.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4668999999999999999998899 99999887556 9999999887764
No 23
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=9.8e-06 Score=82.80 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=73.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhh
Q 043612 65 LKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLI 143 (327)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI 143 (327)
++-|.|+.-||+.|..+|.+|| +.|+.|+..++-.|..||+.|| ...++|.+++..|+.+||.-+
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw--------------~e~ldp~i~~tews~eederl 70 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARW--------------EEWLDPAIKKTEWSREEDERL 70 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHH--------------HHHhCHHHhhhhhhhhHHHHH
Confidence 4568899999999999999999 5699999999999999999555 457899999999999999998
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCCHHHHhhhc
Q 043612 144 LNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNL 175 (327)
Q Consensus 144 ~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~n 175 (327)
+.+...--.-|.++ +.+ -|++.++=.-.|+
T Consensus 71 Lhlakl~p~qwrtI-a~i-~gr~~~qc~eRy~ 100 (617)
T KOG0050|consen 71 LHLAKLEPTQWRTI-ADI-MGRTSQQCLERYN 100 (617)
T ss_pred HHHHHhcCCccchH-HHH-hhhhHHHHHHHHH
Confidence 88765434444444 333 2435555555554
No 24
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.50 E-value=3e-05 Score=77.88 Aligned_cols=50 Identities=22% Similarity=0.633 Sum_probs=46.4
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceeccc
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR 62 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~ 62 (327)
+-...||.+|+-+|++++..||-|||..||+++| .|+..+|+++|.+++-
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999 9999999999998754
No 25
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.30 E-value=0.00046 Score=69.55 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 64 DLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
.+-...||.+|+-+|++++..|| ++|..||..+..||..+||..|.++.-..
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s 121 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNS 121 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcC
Confidence 34557899999999999999999 89999999999999999999988765443
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.19 E-value=0.00098 Score=49.73 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CH---HHHHhhCC-CC-CHHHHHhhhhhh
Q 043612 67 RGSFSPQEAALIIELHSILGN-RW---AQIARHLP-GR-TDNEKKLMSHEI 111 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~-kW---~~IA~~lp-gR-T~~qcK~Rw~~i 111 (327)
+-.||+||..+++++++.+|. +| ..|++.|. .| |..||+.+....
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 558999999999999999996 99 99999874 45 999999776653
No 27
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.87 E-value=0.0007 Score=53.00 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHH------hC--C------CHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCc
Q 043612 67 RGSFSPQEAALIIELHSI------LG--N------RWAQIARHL----PGRTDNEKKLMSHEIVPALASFPA 120 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~------~G--~------kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~ 120 (327)
|..||.+|...|++++.. ++ + -|..||..| -.||+.||+.||..|.+.-+....
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~ 72 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD 72 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999877 21 1 299999987 469999999999999988766644
No 28
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.83 E-value=0.0014 Score=66.67 Aligned_cols=45 Identities=27% Similarity=0.465 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612 67 RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEI 111 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~i 111 (327)
...||.+|..+|++.++.||..|.+||.++..||..||-.+|.+|
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 458999999999999999999999999999999999999998774
No 29
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.71 E-value=0.0021 Score=66.58 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612 65 LKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEI 111 (327)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~i 111 (327)
..++.||.+|..+|++++..||..|.+||.++.+||..||-.+|..+
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 44678999999999999999999999999999999999999888763
No 30
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.61 E-value=0.00059 Score=69.39 Aligned_cols=46 Identities=26% Similarity=0.617 Sum_probs=42.3
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~ 60 (327)
....||.+|..+|+++|+.||. +|.+||++++ +|+..||..||.++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence 5669999999999999999996 5999999999 99999999998754
No 31
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.58 E-value=0.0022 Score=57.21 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CCC----HHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 66 KRGSFSPQEAALIIELHSIL---GNR----WAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~---G~k----W~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
+...||.|||.+|.+.|-+| |+. +..++..| +||+..|.=||...+|.
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRK 57 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHH
Confidence 56789999999999999887 432 89999999 99999999999998875
No 32
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.55 E-value=0.0035 Score=47.98 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-------CC--HHHHHhhCC-CCCHHHHHhhhhhhcccc
Q 043612 67 RGSFSPQEAALIIELHSILG-------NR--WAQIARHLP-GRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G-------~k--W~~IA~~lp-gRT~~qcK~Rw~~ilr~~ 115 (327)
|.+||.|||+.|++.|.++. ++ |.++++..+ .+|-...|+||.+.++..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 46899999999999997652 12 999999977 899999999998766543
No 33
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.26 E-value=0.0063 Score=56.12 Aligned_cols=96 Identities=22% Similarity=0.252 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccc--ccccccccccceecccC----------------C-----CCCCCCCH
Q 043612 16 LWSPEEDEKLINYVTTYGHGCWSSVPKHAGL--QRCGKSCRLRWINYLRP----------------D-----LKRGSFSP 72 (327)
Q Consensus 16 ~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~--gRt~~QCr~Rw~~~L~p----------------~-----lkkg~WT~ 72 (327)
+|++++|-+|+.+|..-. +-..|+..+.. .-|-..+.+||+..|-. . ..+-+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998754 45566554433 33566778899866432 1 13568999
Q ss_pred HHHHHHHHHHHHhCC---CHHHHHhh-----CCCCCHHHHHhhhhhhcc
Q 043612 73 QEAALIIELHSILGN---RWAQIARH-----LPGRTDNEKKLMSHEIVP 113 (327)
Q Consensus 73 EED~~Ll~lV~~~G~---kW~~IA~~-----lpgRT~~qcK~Rw~~ilr 113 (327)
+|+++|......... .+.+|=.. -++||++++...|+.+.+
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq 127 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ 127 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence 999999997766543 36665443 378999999999996543
No 34
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.21 E-value=0.0018 Score=67.14 Aligned_cols=47 Identities=26% Similarity=0.650 Sum_probs=42.9
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~ 60 (327)
.-++.||.+|+-+|+++|+.||. +|.+||.+++ +|+..||..++.+.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence 45789999999999999999996 5999999999 99999999988754
No 35
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.99 E-value=0.0091 Score=45.98 Aligned_cols=51 Identities=24% Similarity=0.338 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----C-------------CHHHHHhhC-----CCCCHHHHHhhhhhhcccccC
Q 043612 67 RGSFSPQEAALIIELHSILG----N-------------RWAQIARHL-----PGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G----~-------------kW~~IA~~l-----pgRT~~qcK~Rw~~ilr~~k~ 117 (327)
+..||.+|...|++++.++. + -|..|+..| +.||..++|.+|..+....+.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45799999999999998862 1 199999987 369999999999998876544
No 36
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.89 E-value=0.0015 Score=49.93 Aligned_cols=52 Identities=25% Similarity=0.447 Sum_probs=33.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCC------CC--ccccccccccccccccccccceecccCCC
Q 043612 14 RGLWSPEEDEKLINYVTTYGH------GC--WSSVPKHAGLQRCGKSCRLRWINYLRPDL 65 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~------~n--W~~IA~~l~~gRt~~QCr~Rw~~~L~p~l 65 (327)
|.+||.|||+.|++.|.++.. || |+++++.-++.+|..+-|+||.+.|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 568999999999999976621 22 99999887767899999999999887643
No 37
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.82 E-value=0.0015 Score=51.11 Aligned_cols=48 Identities=29% Similarity=0.662 Sum_probs=32.9
Q ss_pred ccCCCHHHHHHHHHHHHH--h----CC-C------Ccccccccc---ccccccccccccceecc
Q 043612 14 RGLWSPEEDEKLINYVTT--Y----GH-G------CWSSVPKHA---GLQRCGKSCRLRWINYL 61 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~k--y----g~-~------nW~~IA~~l---~~gRt~~QCr~Rw~~~L 61 (327)
|..||.+|...|+.++.. + +. + -|..||..| |..|++.||+.||.++.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 457999999999999987 2 11 1 399999887 44799999999998753
No 38
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.50 E-value=0.0023 Score=57.05 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=42.2
Q ss_pred CcccCCCHHHHHHHHHHHHHh---CC---CCccccccccccccccccccccceecccC
Q 043612 12 VKRGLWSPEEDEKLINYVTTY---GH---GCWSSVPKHAGLQRCGKSCRLRWINYLRP 63 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~ky---g~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p 63 (327)
.+...||.|||.+|.+.|-+| |. ....++++.++ ||+..|.-||..++..
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence 467789999999999999998 21 14788999886 9999999999988763
No 39
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.19 E-value=0.0046 Score=60.62 Aligned_cols=50 Identities=20% Similarity=0.493 Sum_probs=46.1
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceeccc
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR 62 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~ 62 (327)
+---.|+..|+-+|++.....|.|||..||..+| .|+...|+++|.+++.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~ 110 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD 110 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence 3345799999999999999999999999999999 9999999999998876
No 40
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.88 E-value=0.024 Score=51.17 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC-------HHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 65 LKRGSFSPQEAALIIELHSILGNR-------WAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G~k-------W~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
.+...||.|||.+|.+.|-.|+.. ...++..| +||..+|.-||...+|.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk 58 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRK 58 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHH
Confidence 356789999999999999888632 67777788 99999999999766663
No 41
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.24 E-value=0.044 Score=53.95 Aligned_cols=47 Identities=26% Similarity=0.402 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612 67 RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVP 113 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr 113 (327)
-..|+.+|+.+|++...-+| ++|..||..++.|+..+||..|.+..-
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 34799999999999999999 899999999999999999988876443
No 42
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.01 E-value=0.086 Score=59.19 Aligned_cols=101 Identities=14% Similarity=0.290 Sum_probs=77.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------cceec---------------------------
Q 043612 15 GLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRL-------RWINY--------------------------- 60 (327)
Q Consensus 15 g~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~-------Rw~~~--------------------------- 60 (327)
..||.-|=..++.+..+||..+-..||..|. +++...++. ||..+
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~ 903 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI 903 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999997 777655432 22110
Q ss_pred ---------------cc-CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC------------CCCCHHHHHhhhhhh
Q 043612 61 ---------------LR-PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHL------------PGRTDNEKKLMSHEI 111 (327)
Q Consensus 61 ---------------L~-p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~l------------pgRT~~qcK~Rw~~i 111 (327)
+. +..++..||.|||..|+-.+.+|| .+|..|-..+ ..||+.++..|-..|
T Consensus 904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l 983 (1033)
T PLN03142 904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL 983 (1033)
T ss_pred HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence 00 122345699999999999999999 6799985532 579999999999988
Q ss_pred ccccc
Q 043612 112 VPALA 116 (327)
Q Consensus 112 lr~~k 116 (327)
+..+.
T Consensus 984 ~~~~~ 988 (1033)
T PLN03142 984 IRLIE 988 (1033)
T ss_pred HHHHH
Confidence 88873
No 43
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=93.66 E-value=0.013 Score=52.79 Aligned_cols=50 Identities=24% Similarity=0.448 Sum_probs=39.6
Q ss_pred CCcccCCCHHHHHHHHHHHHHhCCCC------ccccccccccccccccccccceeccc
Q 043612 11 KVKRGLWSPEEDEKLINYVTTYGHGC------WSSVPKHAGLQRCGKSCRLRWINYLR 62 (327)
Q Consensus 11 k~kkg~WT~EEDe~L~~lV~kyg~~n------W~~IA~~l~~gRt~~QCr~Rw~~~L~ 62 (327)
+.+...||.|||.+|.+.|-+|+... ...++..+. |++.+|..||..++.
T Consensus 2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr 57 (170)
T PRK13923 2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR 57 (170)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence 45778999999999999999985432 556666765 999999999966554
No 44
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.37 E-value=0.012 Score=45.33 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=39.0
Q ss_pred cccCCCHHHHHHHHHHHHHh-----CC-----------CCccccccccc----cccccccccccceecc
Q 043612 13 KRGLWSPEEDEKLINYVTTY-----GH-----------GCWSSVPKHAG----LQRCGKSCRLRWINYL 61 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~ky-----g~-----------~nW~~IA~~l~----~gRt~~QCr~Rw~~~L 61 (327)
++..||.+|.+.|+++|.+| +. ..|..|+..|. ..|+..|++.+|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 45789999999999999987 21 13999998772 2689999999998754
No 45
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=91.40 E-value=0.38 Score=37.90 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHh---CC----------CHHHHHhhC---C--CCCHHHHHhhhhhhcccc
Q 043612 69 SFSPQEAALIIELHSIL---GN----------RWAQIARHL---P--GRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~---G~----------kW~~IA~~l---p--gRT~~qcK~Rw~~ilr~~ 115 (327)
.||.++++.|++++.+. |+ .|..|+..| . ..|..||++||..+.+.-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y 65 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY 65 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 49999999999988653 21 199999987 2 347899999998876653
No 46
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=91.27 E-value=0.25 Score=42.03 Aligned_cols=54 Identities=17% Similarity=0.369 Sum_probs=42.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhC------------CCCCHHHHHhhhhhhcccccC
Q 043612 64 DLKRGSFSPQEAALIIELHSILGN----RWAQIARHL------------PGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G~----kW~~IA~~l------------pgRT~~qcK~Rw~~ilr~~k~ 117 (327)
..++..||++||..|+-.+.+||- .|..|-..+ ..||+.++..|=..|++.+.+
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K 115 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK 115 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence 446778999999999999999995 598887753 469999999998888877644
No 47
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.25 E-value=0.21 Score=49.01 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CCHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCccc
Q 043612 67 RGSFSPQEAALIIELHSILG----------NRWAQIARHL----PGRTDNEKKLMSHEIVPALASFPADF 122 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G----------~kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~r~ 122 (327)
...|+.+|-..||++..+.- .-|..||+.+ --||+.|||.||..+.+..++.+...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~ 123 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK 123 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 36899999999999887642 2399999965 34999999999999988876664433
No 48
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=91.11 E-value=0.31 Score=49.08 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhh
Q 043612 68 GSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHE 110 (327)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ 110 (327)
.+||.+|-++..++....|..++.||..+|.|..+|+|.+|.+
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence 4799999999999999999999999999999999999988865
No 49
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=89.70 E-value=0.13 Score=51.91 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=60.9
Q ss_pred CccccccccccccccccccccceecccCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCCHH
Q 043612 36 CWSSVPKHAGLQRCGKSCRLRWINYLRPD-------------------------LKRGSFSPQEAALIIELHSILGNRWA 90 (327)
Q Consensus 36 nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~-------------------------lkkg~WT~EED~~Ll~lV~~~G~kW~ 90 (327)
.|..+.=..+ -|...---.+|.+.-++. +....||++|-+.|.++++.|.-+|.
T Consensus 75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~ 153 (445)
T KOG2656|consen 75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF 153 (445)
T ss_pred CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence 4666553333 566666666777663321 12346999999999999999999999
Q ss_pred HHHhh-----CCC-CCHHHHHhhhhhhcccccCC
Q 043612 91 QIARH-----LPG-RTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 91 ~IA~~-----lpg-RT~~qcK~Rw~~ilr~~k~~ 118 (327)
.||.. ++. ||-..+|.||..+.+.+..-
T Consensus 154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA 187 (445)
T KOG2656|consen 154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA 187 (445)
T ss_pred EEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence 99987 555 99999999999988876443
No 50
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=80.75 E-value=1.5 Score=40.73 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhC---CCCCHHHHHhhhhhhcccccCCC--ccccCCCCccc-----cCCCCCCC
Q 043612 69 SFSPQEAALIIELHSILGNRWAQIARHL---PGRTDNEKKLMSHEIVPALASFP--ADFHNSLCPEE-----VGFFSLNT 138 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G~kW~~IA~~l---pgRT~~qcK~Rw~~ilr~~k~~~--~r~~N~L~P~i-----~~~~wt~e 138 (327)
.|++++|-+|+.+|.. |+.=..|+..+ -..|-.++..||..++..-.-.+ ..-...|.|.. .+.+|+.+
T Consensus 1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~~ 79 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSKE 79 (199)
T ss_pred CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCHH
Confidence 5999999999999965 55666676654 33588999999999877643332 22223344332 45789999
Q ss_pred Cchhhhhh
Q 043612 139 NPNLILNS 146 (327)
Q Consensus 139 Ed~lI~~~ 146 (327)
|+++|...
T Consensus 80 EE~lL~~v 87 (199)
T PF13325_consen 80 EEQLLGTV 87 (199)
T ss_pred HHHHHHhh
Confidence 99998663
No 51
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=79.43 E-value=1.1 Score=38.22 Aligned_cols=35 Identities=29% Similarity=0.562 Sum_probs=28.8
Q ss_pred CCcccCCCHHHHHHHHHHHHHhCC---CCccccccccc
Q 043612 11 KVKRGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAG 45 (327)
Q Consensus 11 k~kkg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~ 45 (327)
..+++.||.+||..|+-++.+||. +.|..|...+.
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir 83 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIR 83 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 556889999999999999999998 88999987653
No 52
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=79.37 E-value=3.7 Score=42.47 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612 66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEI 111 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~i 111 (327)
....||.||-.++-++...||.++.+|-+.||.|+-..++.-|...
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~ 231 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSW 231 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999998777653
No 53
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=79.26 E-value=3 Score=29.45 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612 72 PQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVP 113 (327)
Q Consensus 72 ~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr 113 (327)
++++..++.++...|-.|.+||+.+ |.|...++.+....++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4677888888888899999999999 8999999977665443
No 54
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=77.92 E-value=0.73 Score=45.15 Aligned_cols=48 Identities=27% Similarity=0.453 Sum_probs=37.8
Q ss_pred ccCCCHHHHHHHHHHHHHh----CC-----CCcccccccc---ccccccccccccceecc
Q 043612 14 RGLWSPEEDEKLINYVTTY----GH-----GCWSSVPKHA---GLQRCGKSCRLRWINYL 61 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~ky----g~-----~nW~~IA~~l---~~gRt~~QCr~Rw~~~L 61 (327)
...|+.+|-..|+++..+. .. .-|..||+.+ +..|++.||+.||.++.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4789999999999998754 11 2399999844 45799999999997743
No 55
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=75.68 E-value=1.4 Score=44.52 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=42.3
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccee
Q 043612 10 QKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWIN 59 (327)
Q Consensus 10 ~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~ 59 (327)
++..--+||.+|-+++.+++..+|. ++..|+..++ .|..+|++.+|.+
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~ 408 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIK 408 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHH
Confidence 3444568999999999999999996 5999999999 9999999998864
No 56
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=74.28 E-value=1.8 Score=34.56 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=16.6
Q ss_pred CCCcccCCCHHHHHHH--------HHHHHHhCCCCcccccc
Q 043612 10 QKVKRGLWSPEEDEKL--------INYVTTYGHGCWSSVPK 42 (327)
Q Consensus 10 ~k~kkg~WT~EEDe~L--------~~lV~kyg~~nW~~IA~ 42 (327)
|....|-||+|+|+.| .+++++|| +..|++
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~ 80 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER 80 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 3455889999999999 44666776 445544
No 57
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=71.37 E-value=8 Score=26.86 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhh
Q 043612 73 QEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEI 111 (327)
Q Consensus 73 EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~i 111 (327)
+=|..|+.+.++-|. .|.+||+.+ |=|...|..|.+.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 458889999988884 599999999 89999999998765
No 58
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=70.51 E-value=7.8 Score=33.57 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 72 PQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 72 ~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
.+-|.+|+.+.++-| ..|++||+.+ |-|...|+.|++.+....
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~G 51 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAG 51 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 357899999999988 5699999999 999999999999987764
No 59
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=63.21 E-value=2.3 Score=33.44 Aligned_cols=44 Identities=20% Similarity=0.534 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------Cccccccccc----ccccccccccccee
Q 043612 16 LWSPEEDEKLINYVTTY---GHG---------CWSSVPKHAG----LQRCGKSCRLRWIN 59 (327)
Q Consensus 16 ~WT~EEDe~L~~lV~ky---g~~---------nW~~IA~~l~----~gRt~~QCr~Rw~~ 59 (327)
.||+++++.|++++... |.. .|..|++.|. ...+..||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999998654 211 2777777664 13355667776643
No 60
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=63.06 E-value=11 Score=33.18 Aligned_cols=44 Identities=7% Similarity=-0.065 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612 72 PQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALA 116 (327)
Q Consensus 72 ~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k 116 (327)
.+-|.+|+.+.++-| ..|++||+.+ |=|...|+.|++.+.....
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 456889999998888 5699999999 9999999999999877643
No 61
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=61.48 E-value=11 Score=26.23 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 73 QEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 73 EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
+++..++.++-..|..+.+||..+ |-|...++.+....+..+
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~kL 48 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKKL 48 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHHh
Confidence 455566666655667899999999 889999998877666554
No 62
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=60.15 E-value=12 Score=33.41 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhh
Q 043612 69 SFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHE 110 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ 110 (327)
.||+|+.++|.+|..+ |..=++||+.|.|.|.+.|.-+-+.
T Consensus 2 ~Wtde~~~~L~~lw~~-G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHHHc-CCCHHHHHHHhCCcchhhhhhhhhc
Confidence 5999999999999854 8788999999987999988755443
No 63
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=58.75 E-value=12 Score=30.99 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 78 IIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 78 Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
++.+.-..|-.+.+||+.+ |.|...++.+.+..++.+++
T Consensus 121 il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~Lr~ 159 (161)
T TIGR02985 121 IFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKELRK 159 (161)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHh
Confidence 3334334577899999998 89999999998887776654
No 64
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=57.61 E-value=9.4 Score=40.88 Aligned_cols=52 Identities=10% Similarity=0.273 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhh----------CCCCCHHHHHhhhhhhcccccCC
Q 043612 67 RGSFSPQEAALIIELHSILGNRWAQIARH----------LPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~----------lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
|..||..|..-...+++++|..+.+|-.. ..-+|..|+|..|.++++++.+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~ 149 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKL 149 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 67899999999999999999999888332 23467789999999888877554
No 65
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=57.50 E-value=4 Score=44.50 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=39.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccce
Q 043612 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWI 58 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~ 58 (327)
..+||+.|-.++.+++-.|. +++..|++.+. ++|.+||-+-|+
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~-~KtVaqCVeyYY 661 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVK-SKTVAQCVEYYY 661 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHHhc-cccHHHHHHHHH
Confidence 46899999999999999998 57999999999 999999988664
No 66
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=56.46 E-value=9.8 Score=40.54 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhh
Q 043612 66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHE 110 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ 110 (327)
..++|+.+|-++........|...+.|+..+++|+..|+|.+|..
T Consensus 408 ~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred ccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhh
Confidence 457899999999999999999999999999999999999988764
No 67
>smart00595 MADF subfamily of SANT domain.
Probab=55.26 E-value=10 Score=29.42 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.3
Q ss_pred HHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 89 WAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 89 W~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
|.+||..| |-|..+|+.||+.|....
T Consensus 30 W~~Ia~~l-~~~~~~~~~kw~~LR~~y 55 (89)
T smart00595 30 WEEIAEEL-GLSVEECKKRWKNLRDRY 55 (89)
T ss_pred HHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 99999999 459999999999876554
No 68
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=55.23 E-value=12 Score=29.76 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=9.9
Q ss_pred CCCCCCCCCHHHHHHHH
Q 043612 63 PDLKRGSFSPQEAALII 79 (327)
Q Consensus 63 p~lkkg~WT~EED~~Ll 79 (327)
|....|-||+|+|+.|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 45567899999999993
No 69
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=52.94 E-value=21 Score=39.19 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhh---hhhhccc
Q 043612 67 RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLM---SHEIVPA 114 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~R---w~~ilr~ 114 (327)
...||..|-.++-+++..|...+..|++.++++|-.||-.- |+++.+.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWKK~~~~ 669 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWKKIMRL 669 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHHHhccc
Confidence 35799999999999999999999999999999999999876 4455544
No 70
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=51.56 E-value=4.6 Score=35.02 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCC
Q 043612 19 PEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLK 66 (327)
Q Consensus 19 ~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lk 66 (327)
.+-|.+|+.++++.|...|.+||+.++ -+...|+.|+.+..+.++-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 357999999999999889999999997 8899999999887766544
No 71
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=48.93 E-value=8 Score=39.39 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=41.2
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccc-----cccccccccccccceec
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKH-----AGLQRCGKSCRLRWINY 60 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~-----l~~gRt~~QCr~Rw~~~ 60 (327)
++-..||+||-+-|..+.++|.-. |-.||.. ++..||....++||..+
T Consensus 128 l~dn~WskeETD~LF~lck~fDLR-f~VIaDRyd~qq~~~sRTvEdLKeRyY~v 180 (445)
T KOG2656|consen 128 LNDNSWSKEETDYLFDLCKRFDLR-FFVIADRYDNQQYKKSRTVEDLKERYYSV 180 (445)
T ss_pred hccccccHHHHHHHHHHHHhcCee-EEEEeeccchhhccccccHHHHHHHHHHH
Confidence 344679999999999999999965 9999987 66469999999999855
No 72
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=48.56 E-value=4 Score=28.39 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccccccccccee
Q 043612 20 EEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWIN 59 (327)
Q Consensus 20 EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~ 59 (327)
+=|.+|+.++.+.+...|..||+.+| =+...|..|+.+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHH
Confidence 45889999999999888999999997 777888887653
No 73
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=47.62 E-value=4.5 Score=35.52 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCC
Q 043612 19 PEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLK 66 (327)
Q Consensus 19 ~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lk 66 (327)
.+-|.+|+.++++.|.-.|.+||+.++ -+...|+.|+.+..+.++-
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 567999999999999889999999997 8888999999887766553
No 74
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=46.17 E-value=44 Score=33.34 Aligned_cols=44 Identities=25% Similarity=0.450 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHh-CCC---HHHHHhhCCCCCHHHHHhhhhh
Q 043612 67 RGSFSPQEAALIIELHSIL-GNR---WAQIARHLPGRTDNEKKLMSHE 110 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~-G~k---W~~IA~~lpgRT~~qcK~Rw~~ 110 (327)
-..||.-|...|+.+.+.. |.. -.+|++.++||+..+|++.-..
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~ 68 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQ 68 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHH
Confidence 3579999999999988765 433 5789999999999998765443
No 75
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=42.23 E-value=38 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 75 AALIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 75 D~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
|+.|..+....|..|..+|..| |=|..++.
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~I~ 31 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTDIY 31 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 5678899999999999999998 66666554
No 76
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=41.47 E-value=54 Score=25.60 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=25.7
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCC---CC--HHHHHhhhhhhc
Q 043612 77 LIIELHSILG--------NRWAQIARHLPG---RT--DNEKKLMSHEIV 112 (327)
Q Consensus 77 ~Ll~lV~~~G--------~kW~~IA~~lpg---RT--~~qcK~Rw~~il 112 (327)
.|..+|.+.| ..|..||+.|.- -+ +.++|..|...+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L 88 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYL 88 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHh
Confidence 4777888887 359999999822 12 367888887765
No 77
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=41.14 E-value=36 Score=27.24 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=27.4
Q ss_pred HHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 81 LHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 81 lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
+.-..|..+.+||+.+ |=|...++.+....++.+++
T Consensus 121 ~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~kl~~ 156 (158)
T TIGR02937 121 LRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKKLRE 156 (158)
T ss_pred hHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHh
Confidence 3334577899999999 67999999888877766543
No 78
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=40.27 E-value=52 Score=32.86 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=63.8
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCC---ccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHH-h----
Q 043612 14 RGLWSPEEDEKLINYVTTYGHGC---WSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSI-L---- 85 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~n---W~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~-~---- 85 (327)
-..||.-|...|+++++...... -.+|++.+. +|+..++++- .+.|+ +..+.+++++ +
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~-~Rs~aEI~~f-l~~LK------------~rvareaiqkv~~~g~ 86 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELP-GRSEAEIRDF-LQQLK------------GRVAREAIQKVHPGGL 86 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhcc-CcCHHHHHHH-HHHHH------------HHHHHHHHHHhccccc
Confidence 56899999999999998763233 356777888 8988887763 22232 2344455544 1
Q ss_pred -CCC------------HHHHHhhCCCCCHHHHHhhhhhhcccccCCCc
Q 043612 86 -GNR------------WAQIARHLPGRTDNEKKLMSHEIVPALASFPA 120 (327)
Q Consensus 86 -G~k------------W~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~ 120 (327)
|.+ |..+|+.+.|.-...+---|.+++.--...+-
T Consensus 87 ~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~iaatep~ 134 (344)
T PF11035_consen 87 KGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLTIAATEPC 134 (344)
T ss_pred ccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCcc
Confidence 211 99999999999998888778776655444433
No 79
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=38.93 E-value=72 Score=20.85 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhc
Q 043612 70 FSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIV 112 (327)
Q Consensus 70 WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~il 112 (327)
++.++ ..++.++-..|..+..||..+ |=+...++.+.....
T Consensus 11 l~~~~-~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~~ 51 (55)
T cd06171 11 LPERE-REVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRAL 51 (55)
T ss_pred CCHHH-HHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44444 445555555678899999998 677777775555443
No 80
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=37.27 E-value=57 Score=25.99 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 75 AALIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 75 D~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
|..|..+....|..|.++|..| |=+..++.
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~dI~ 33 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDEIN 33 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHHHH
Confidence 6678888999999999999999 66666654
No 81
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=36.86 E-value=47 Score=34.70 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCc
Q 043612 69 SFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPA 120 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~ 120 (327)
.||++|-. +++...-||.+...||..+...|..|++.||..-.+.+....+
T Consensus 472 ~wSp~e~s-~ircf~~y~~~fe~ia~l~~tktp~Q~~~fy~~n~k~i~~~~~ 522 (534)
T KOG1194|consen 472 GWSPEEKS-AIRCFHWYKDNFELIAELMATKTPEQIKKFYMDNEKLILESID 522 (534)
T ss_pred CCCCcccc-cccCchhhccchHHHHHHhcCCCHHHHHHHhcCchhhhcCCCh
Confidence 59999988 7777788999999999999999999999999876665555443
No 82
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=36.19 E-value=75 Score=25.24 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 73 QEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 73 EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
+.|..|+.+..+.| ..+.+||+.+ |-+...++.|...+...
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~ 44 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEE 44 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 56888888888877 4799999999 99999999988887665
No 83
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=35.50 E-value=59 Score=33.16 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhh-CCCCCHHHHHhhhhh
Q 043612 68 GSFSPQEAALIIELHSILGNRWAQIARH-LPGRTDNEKKLMSHE 110 (327)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~kW~~IA~~-lpgRT~~qcK~Rw~~ 110 (327)
..|+++|-...-+..+.||+.+..|.+. ++.|+--.|-..|..
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHH
Confidence 4799999999999999999999999885 899999999876543
No 84
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=35.33 E-value=36 Score=38.87 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHh-------hhhh---------------------------hcc
Q 043612 69 SFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKL-------MSHE---------------------------IVP 113 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~-------Rw~~---------------------------ilr 113 (327)
.||.-|=..++.+..+|| ..-..||..|.|+|..+|+. ||.. +.+
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~ 905 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK 905 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888889999 56899999999999999873 2211 222
Q ss_pred cccCCCccccCC-CC-ccccCCCCCCCCchhhhhhhhccC
Q 043612 114 ALASFPADFHNS-LC-PEEVGFFSLNTNPNLILNSHQQDH 151 (327)
Q Consensus 114 ~~k~~~~r~~N~-L~-P~i~~~~wt~eEd~lI~~~~~~~g 151 (327)
.+..+..-|..- +. +..++..++.+||+.|+-....+|
T Consensus 906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g 945 (1033)
T PLN03142 906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLG 945 (1033)
T ss_pred HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhc
Confidence 223332223211 11 344556799999999988777776
No 85
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=35.31 E-value=46 Score=29.52 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 76 ALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 76 ~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
..++++..-.|-.+.+||+.+ |-|...++.||+.+...+
T Consensus 141 ~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR~~l 179 (185)
T PF07638_consen 141 RRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRARAWL 179 (185)
T ss_pred HHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 444445445678899999999 999999999998876443
No 86
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=34.19 E-value=49 Score=27.05 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=39.7
Q ss_pred cccCCCHHHHHHHHHHHHHh----CCC---Cccccccccc----ccccccc-------ccccceecccCCCCCC---CCC
Q 043612 13 KRGLWSPEEDEKLINYVTTY----GHG---CWSSVPKHAG----LQRCGKS-------CRLRWINYLRPDLKRG---SFS 71 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~ky----g~~---nW~~IA~~l~----~gRt~~Q-------Cr~Rw~~~L~p~lkkg---~WT 71 (327)
-...||.|++-.|++++..| |.. +|..+-..+. ..=+..| .+.||.+.... .+.| .++
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k-~~~g~~~~~~ 81 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK-SKNGKDPSFS 81 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh-cccCcCCCCC
Confidence 34679999999999999888 422 3333322221 1112222 34455554443 2222 577
Q ss_pred HHHHHHHHHHHHH
Q 043612 72 PQEAALIIELHSI 84 (327)
Q Consensus 72 ~EED~~Ll~lV~~ 84 (327)
..-|..+.+|.++
T Consensus 82 ~~hd~~~f~Lsk~ 94 (98)
T PF04504_consen 82 KPHDRRLFELSKK 94 (98)
T ss_pred CHhHHHHHHHHHH
Confidence 7777777777653
No 87
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=33.94 E-value=31 Score=25.74 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=22.4
Q ss_pred HHHHHhhCCC-CCHHHHHhhhhhhccccc
Q 043612 89 WAQIARHLPG-RTDNEKKLMSHEIVPALA 116 (327)
Q Consensus 89 W~~IA~~lpg-RT~~qcK~Rw~~ilr~~k 116 (327)
|..||..+.+ -+..+|+.||..+.....
T Consensus 29 w~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~ 57 (85)
T PF10545_consen 29 WQEIARELGKEFSVDDCKKRWKNLRDRYR 57 (85)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 9999999953 578889999998776543
No 88
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=31.48 E-value=87 Score=24.72 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=26.6
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCC-----CHHHHHhhhhhhccc
Q 043612 77 LIIELHSILGN--------RWAQIARHLPGR-----TDNEKKLMSHEIVPA 114 (327)
Q Consensus 77 ~Ll~lV~~~G~--------kW~~IA~~lpgR-----T~~qcK~Rw~~ilr~ 114 (327)
.|..+|.+.|+ .|.+||+.|.-. ...++|..|.+.+..
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 47777888773 599999998322 356788777776543
No 89
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=31.17 E-value=60 Score=25.36 Aligned_cols=30 Identities=27% Similarity=0.676 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 75 AALIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 75 D~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
|..|..+.+..|..|.++|+.| |=+..++.
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~dI~ 33 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETDID 33 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 5567888899999999999999 66665544
No 90
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=30.91 E-value=61 Score=27.42 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=25.8
Q ss_pred HHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 83 SILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 83 ~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
...|..+.+||+.+ |-+...++.+.+..++.++.
T Consensus 141 ~~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 174 (182)
T PRK09652 141 EIEGLSYEEIAEIM-GCPIGTVRSRIFRAREALRA 174 (182)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 34567899999999 88999998877765555543
No 91
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=28.32 E-value=83 Score=24.88 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 75 AALIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 75 D~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
|..|-.+....|.+|.++|+.| |=+...+.
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~L-g~se~dI~ 33 (84)
T cd08804 4 EERLAVIADHLGFSWTELAREL-DFTEEQIH 33 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 4567788889999999999999 67777665
No 92
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=28.30 E-value=1.3e+02 Score=25.39 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHh------------CC-----------------C--HHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 69 SFSPQEAALIIELHSIL------------GN-----------------R--WAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~------------G~-----------------k--W~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
+||.+||-.|-..|.++ |. . ....+...|..|..+-|.||++.+..
T Consensus 1 kfTA~dDY~Lc~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fF~~~~~~~p~HT~~sWRDR~RKfv~~ 77 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQFYRDIYQKDPDTGSSLISDGDSKEFIPKRDMRSFFKDLARKNPRHTENSWRDRYRKFVSE 77 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSB-TTSS-B----------------TTHHHHHHHHTTTS-HHHHHHHHHHTHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhCcccccccccCCCccccccchhhHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 47999999998888654 11 1 56777888999999999999986554
No 93
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=27.93 E-value=30 Score=30.89 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccccccccc
Q 043612 16 LWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKS 52 (327)
Q Consensus 16 ~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~Q 52 (327)
.||.|+.++|.++..+ |. .=.+||+.|+ +.|...
T Consensus 2 ~Wtde~~~~L~~lw~~-G~-SasqIA~~lg-~vsRnA 35 (162)
T PF07750_consen 2 SWTDERVERLRKLWAE-GL-SASQIARQLG-GVSRNA 35 (162)
T ss_pred CCCHHHHHHHHHHHHc-CC-CHHHHHHHhC-Ccchhh
Confidence 5999999999999865 32 3688999998 444333
No 94
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=27.63 E-value=35 Score=36.49 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=42.6
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccce
Q 043612 9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWI 58 (327)
Q Consensus 9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~ 58 (327)
.++...++||.+|-++...++...|. +...|+..++ .|+.+|++.++.
T Consensus 404 sk~~~~~~w~~se~e~fyka~~~~gs-~~slis~l~p-~R~rk~iK~K~~ 451 (584)
T KOG2009|consen 404 SKKLETDKWDASETELFYKALSERGS-DFSLISNLFP-LRDRKQIKAKFK 451 (584)
T ss_pred cCccccCcccchhhHHhhhHHhhhcc-cccccccccc-cccHHHHHHHHh
Confidence 35667899999999999999999996 5999999999 999999988764
No 95
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=27.55 E-value=80 Score=25.78 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHh----C----CCHHHHHhhCCC-----CCHHHHHhhhhhhcccc
Q 043612 68 GSFSPQEAALIIELHSIL----G----NRWAQIARHLPG-----RTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 68 g~WT~EED~~Ll~lV~~~----G----~kW~~IA~~lpg-----RT~~qcK~Rw~~ilr~~ 115 (327)
.-||+|++-.|++.+..| | ..|..+...+.+ =|..|+..+-+.|.++.
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 469999999999988776 6 235554444322 26777766655555543
No 96
>PRK04217 hypothetical protein; Provisional
Probab=27.48 E-value=95 Score=26.13 Aligned_cols=49 Identities=10% Similarity=0.006 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 68 GSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
..-|.+| ..++.+....|-+..+||+.+ |-+...++.+++.....++..
T Consensus 41 ~~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkkLre~ 89 (110)
T PRK04217 41 IFMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKKVAQM 89 (110)
T ss_pred ccCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 3466666 577777777888999999999 999999999888776666554
No 97
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=27.19 E-value=46 Score=28.75 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=26.4
Q ss_pred CCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 86 GNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 86 G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
|....+||..+ |=|...+|.|.+..++.++++
T Consensus 154 ~~s~~EIA~~l-gis~~tv~~~l~rar~~Lr~~ 185 (190)
T TIGR02939 154 GLSYEDIARIM-DCPVGTVRSRIFRAREAIAIR 185 (190)
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 56799999999 888999999888877776654
No 98
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=27.12 E-value=64 Score=27.20 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=25.4
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 84 ILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
..|..+.+||+.| |-|...|+.+.......+++
T Consensus 139 ~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~lr~ 171 (179)
T PRK11924 139 VEGLSYREIAEIL-GVPVGTVKSRLRRARQLLRE 171 (179)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 3467799999999 88999999887766555543
No 99
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=26.80 E-value=64 Score=28.52 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=27.3
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 84 ILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
..|....+||..+ |-+...+|.|....++.+++.
T Consensus 148 ~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~Lr~~ 181 (192)
T PRK09643 148 MQGYSVADAARML-GVAEGTVKSRCARGRARLAEL 181 (192)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 3467799999999 899999999987766666554
No 100
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=26.64 E-value=1.2e+02 Score=25.35 Aligned_cols=43 Identities=12% Similarity=-0.023 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 72 PQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 72 ~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
.+-|.+|+++.++-| ..+..||+.+ |-|...|+.|-+++....
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~G 50 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEG 50 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCC
Confidence 356888888888888 4699999999 899999999988877764
No 101
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=26.20 E-value=1.3e+02 Score=26.56 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC----CCCHHHHHhhhh
Q 043612 66 KRGSFSPQEAALIIELHSILGNRWAQIARHLP----GRTDNEKKLMSH 109 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lp----gRT~~qcK~Rw~ 109 (327)
....-|..|...|..|+.+||..+..+|.... -.|..||+.+..
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~ 160 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIR 160 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHH
Confidence 34578999999999999999999999998642 369999986654
No 102
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=26.19 E-value=31 Score=39.99 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=51.2
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHh-CCCHHH
Q 043612 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSIL-GNRWAQ 91 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~-G~kW~~ 91 (327)
.---|..+||.+|+-.|-+||.++|..|-.-=..+=+.+ ..+....-.+.|=..+-..|+.+.... +.+|..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dK-------i~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~~ 1204 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDK-------IFLVETVPQAKHLQRRADYLLSLLRKHDKGNTPK 1204 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhh-------hcccccCCchHHHHHHHHHHHHHHhhcccCCCch
Confidence 345799999999999999999999998853211111111 111112345667777888888888887 566766
Q ss_pred HHhhC
Q 043612 92 IARHL 96 (327)
Q Consensus 92 IA~~l 96 (327)
.++..
T Consensus 1205 ~~~~~ 1209 (1373)
T KOG0384|consen 1205 KLKRE 1209 (1373)
T ss_pred hhhcc
Confidence 55443
No 103
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=25.87 E-value=64 Score=27.78 Aligned_cols=32 Identities=19% Similarity=-0.004 Sum_probs=25.0
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.|..+.+||..+ |-|...++.+....+..+++
T Consensus 151 ~~~s~~eIA~~l-gis~~~v~~~l~Rar~~Lr~ 182 (187)
T PRK09641 151 EDLSLKEISEIL-DLPVGTVKTRIHRGREALRK 182 (187)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 466799999999 88999999887766655543
No 104
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=25.85 E-value=67 Score=28.34 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 83 SILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 83 ~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
...|.+..+||..| |-|...+|.|....++.++++
T Consensus 144 ~~~g~s~~EIA~~l-gis~~tvk~rl~Rar~~Lr~~ 178 (188)
T TIGR02943 144 EVLGFESDEICQEL-EISTSNCHVLLYRARLSLRAC 178 (188)
T ss_pred HHhCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHH
Confidence 33467799999999 999999999888777776554
No 105
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=25.29 E-value=59 Score=28.55 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=29.8
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCCC-ccccCC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFP-ADFHNS 125 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~-~r~~N~ 125 (327)
.|..-.+||+.| |-|...+|.|....++.++++- ..|.+.
T Consensus 151 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~~Lr~~l~~~~~~~ 191 (195)
T PRK12532 151 LGFSSDEIQQMC-GISTSNYHTIMHRARESLRQCLQIKWFNQ 191 (195)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 466789999999 9999999998887777766553 234433
No 106
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.20 E-value=1.1e+02 Score=24.28 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 78 IIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 78 Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
|..+....|..|.++|+.| |-+..++.
T Consensus 10 l~~ia~~iG~~Wk~Lar~L-Gls~~dI~ 36 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHL-EMKDKEIR 36 (86)
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 3345677899999999999 77777764
No 107
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=24.25 E-value=80 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=25.9
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 84 ILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
..|-...+||..| |-|...++.|....+..+++
T Consensus 120 ~~g~~~~EIA~~l-gis~~tV~~~l~Rar~~Lr~ 152 (181)
T PRK09637 120 LEGLSQKEIAEKL-GLSLSGAKSRVQRGRVKLKE 152 (181)
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Confidence 3467899999999 88999999887766655544
No 108
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=23.97 E-value=79 Score=26.46 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=26.2
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
.|-.-.+||..| |-+...++.|....++.++.+
T Consensus 121 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~~ 153 (161)
T PRK09047 121 EDMDVAETAAAM-GCSEGSVKTHCSRATHALAKA 153 (161)
T ss_pred hcCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Confidence 466789999999 889999998887766665543
No 109
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=23.90 E-value=79 Score=27.84 Aligned_cols=33 Identities=15% Similarity=-0.094 Sum_probs=26.1
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
.|-...+||..| |-|...+|.|.+..++.++.+
T Consensus 156 eg~s~~EIA~~l-gis~~tVk~rl~ra~~~Lr~~ 188 (194)
T PRK12531 156 EELPHQQVAEMF-DIPLGTVKSRLRLAVEKLRHS 188 (194)
T ss_pred cCCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHHH
Confidence 466789999999 999999998877766665543
No 110
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=23.79 E-value=90 Score=26.31 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=25.0
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.|-+..+||+.| |-+...++.|-+..++.+++
T Consensus 137 ~g~s~~eIA~~l-~is~~tv~~~l~ra~~~Lr~ 168 (170)
T TIGR02952 137 QNLPIAEVARIL-GKTEGAVKILQFRAIKKLAR 168 (170)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 366789999999 88899999887776666543
No 111
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=23.77 E-value=66 Score=28.08 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=26.3
Q ss_pred CCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 86 GNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 86 G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
|-...+||+.+ |-|...++.|....++.++.+
T Consensus 154 g~s~~eIA~~l-gis~~tv~~~l~Rar~~Lr~~ 185 (193)
T PRK11923 154 GLSYEDIASVM-QCPVGTVRSRIFRAREAIDKA 185 (193)
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Confidence 56689999999 889999999988877776654
No 112
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=23.70 E-value=1.8e+02 Score=19.72 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHh
Q 043612 73 QEAALIIELHSILGNRWAQIARHLPGRTDNEKKL 106 (327)
Q Consensus 73 EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~ 106 (327)
-|.+.|.++..++|++.++.|+.+ |=+...+..
T Consensus 5 ~E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~ 37 (42)
T PF02954_consen 5 FEKQLIRQALERCGGNVSKAARLL-GISRRTLYR 37 (42)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHH
Confidence 377889999999999999999988 545555543
No 113
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=23.66 E-value=1.1e+02 Score=26.75 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=26.3
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.|-...+||..+ |-|...+|.|....+..+++
T Consensus 145 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~~Lr~ 176 (185)
T PRK09649 145 LGLSYADAAAVC-GCPVGTIRSRVARARDALLA 176 (185)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHh
Confidence 356789999999 89999999888877776655
No 114
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=23.44 E-value=1.1e+02 Score=25.32 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=24.2
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALA 116 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k 116 (327)
.|....+||+.+ |-+...++.+-...+..++
T Consensus 121 ~~~s~~EIA~~l-~is~~tV~~~~~ra~~~Lr 151 (154)
T PRK06759 121 VGKTMGEIALET-EMTYYQVRWIYRQALEKMR 151 (154)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHh
Confidence 356689999999 8999999988776666554
No 115
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=23.30 E-value=70 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.026 Sum_probs=24.7
Q ss_pred CCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 86 GNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 86 G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
|....+||+.+ |-|...++.+....++.++.
T Consensus 152 g~s~~eIA~~l-gis~~~v~~~l~Rar~~Lr~ 182 (187)
T TIGR02948 152 DLSLKEISEIL-DLPVGTVKTRIHRGREALRK 182 (187)
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 56789999999 88999999888776666543
No 116
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=23.21 E-value=77 Score=27.92 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=26.4
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
.|-+..+||..| |-|...||.|....++.++.+
T Consensus 149 ~g~s~~EIA~~l-gis~~tVk~~l~RAr~~Lr~~ 181 (189)
T PRK12530 149 LELSSEQICQEC-DISTSNLHVLLYRARLQLQAC 181 (189)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Confidence 467799999999 999999998877766665543
No 117
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=22.99 E-value=85 Score=27.35 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=25.3
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 84 ILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
..|....+||..| |-+...++.|.+..+..++.
T Consensus 153 ~~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~Lr~ 185 (189)
T PRK09648 153 VVGLSAEETAEAV-GSTPGAVRVAQHRALARLRA 185 (189)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 3467799999999 88899999887766655543
No 118
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=22.97 E-value=30 Score=37.23 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=35.1
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCcccccccccc---------ccccccccccceecc
Q 043612 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGL---------QRCGKSCRLRWINYL 61 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~---------gRt~~QCr~Rw~~~L 61 (327)
+|..||-.|.+.+..+++++| +++..|-..+-. -++..|.|.+|++.+
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV 143 (782)
T ss_pred cccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 367899999999999999999 568888322211 345567788777654
No 119
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=22.86 E-value=84 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=25.0
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.|.+..+||+.+ |-|...++.|....+..++.
T Consensus 134 ~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~Lr~ 165 (169)
T TIGR02954 134 HDLTIKEIAEVM-NKPEGTVKTYLHRALKKLKK 165 (169)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 456789999999 78999999888776665543
No 120
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=21.92 E-value=1.1e+02 Score=23.33 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=22.4
Q ss_pred HHHHHHHHHHH-hCCCHHHHHhhCCCCCHHHHH
Q 043612 74 EAALIIELHSI-LGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 74 ED~~Ll~lV~~-~G~kW~~IA~~lpgRT~~qcK 105 (327)
-++.|..++.. .|..|..+|+.+ |=+..++.
T Consensus 4 ~~~~~~~l~~~~~g~~W~~la~~L-g~~~~~i~ 35 (88)
T smart00005 4 TREKLAKLLDHPLGLDWRELARKL-GLSEADID 35 (88)
T ss_pred HHHHHHHHHcCccchHHHHHHHHc-CCCHHHHH
Confidence 34566677777 899999999999 44555543
No 121
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=21.74 E-value=1e+02 Score=24.16 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 72 PQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 72 ~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
+||-++|+..= ..|.+|..+|..| |=+...++
T Consensus 2 ~~~v~~ll~~~-nlG~dW~~LA~~L-G~~~~~I~ 33 (77)
T cd08311 2 QEEVEKLLESG-RPGRDWRSLAGEL-GYEDEAID 33 (77)
T ss_pred hHHHHHHHhCC-CCccCHHHHHHHc-CCCHHHHH
Confidence 57888887322 4578899999999 77777776
No 122
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=21.56 E-value=1.2e+02 Score=24.18 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCHHHHHhhCCCCCHHHHHh
Q 043612 76 ALIIELHSILGNRWAQIARHLPGRTDNEKKL 106 (327)
Q Consensus 76 ~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~ 106 (327)
+.|-.+....|..|..+|+.| |=+..++..
T Consensus 3 ~~l~~l~~~lG~~Wk~lar~L-G~s~~eI~~ 32 (86)
T cd08777 3 KHLDLLRENLGKKWKRCARKL-GFTESEIEE 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 345556677899999999999 777777763
No 123
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=21.28 E-value=79 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=27.3
Q ss_pred HHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 81 LHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 81 lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
+....|-...+||+.| |-+...+|.|-...++.++..
T Consensus 127 L~~~~g~s~~EIA~~L-gis~~tVk~~l~Rar~~Lr~~ 163 (187)
T PRK12516 127 LVGASGFAYEEAAEIC-GCAVGTIKSRVNRARQRLQEI 163 (187)
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Confidence 3334467799999999 888999998877666655443
No 124
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=21.04 E-value=96 Score=26.69 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=26.0
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
.|..-.+||+.| |.|...++.|....+..++++
T Consensus 144 ~g~s~~eIA~~l-gis~~tV~~~l~Rar~~Lr~~ 176 (179)
T PRK12514 144 EGLSYKELAERH-DVPLNTMRTWLRRSLLKLREC 176 (179)
T ss_pred cCCCHHHHHHHH-CCChHHHHHHHHHHHHHHHHH
Confidence 366789999999 999999998877766665543
No 125
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=20.95 E-value=1.1e+02 Score=25.70 Aligned_cols=32 Identities=6% Similarity=-0.082 Sum_probs=24.9
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.|-.-.+||+.+ |-+...+|.|....+..++.
T Consensus 121 ~g~s~~EIA~~l-gis~~tV~~~l~Rar~~Lr~ 152 (160)
T PRK09642 121 EEKSYQEIALQE-KIEVKTVEMKLYRARKWIKK 152 (160)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 466789999999 99999999887766555543
No 126
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=20.70 E-value=1.4e+02 Score=20.35 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 73 QEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 73 EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
++-..++.++.+ |....+||+.+ |-+...++
T Consensus 5 ~~R~~ii~l~~~-G~s~~~ia~~l-gvs~~Tv~ 35 (50)
T PF13384_consen 5 ERRAQIIRLLRE-GWSIREIAKRL-GVSRSTVY 35 (50)
T ss_dssp -----HHHHHHH-T--HHHHHHHH-TS-HHHHH
T ss_pred hHHHHHHHHHHC-CCCHHHHHHHH-CcCHHHHH
Confidence 344456677777 88999999998 67776665
No 127
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=20.58 E-value=1.4e+02 Score=23.86 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHH
Q 043612 75 AALIIELHSILGNRWAQIARHLPGRTDNE 103 (327)
Q Consensus 75 D~~Ll~lV~~~G~kW~~IA~~lpgRT~~q 103 (327)
|.+|..+.+..|..|.++|..| |=+...
T Consensus 4 ~~~l~~Ia~~LG~dW~~Lar~L-~vs~~d 31 (84)
T cd08805 4 EMKMAVIREHLGLSWAELAREL-QFSVED 31 (84)
T ss_pred hhHHHHHHHHhcchHHHHHHHc-CCCHHH
Confidence 5567788899999999999998 444443
No 128
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=20.35 E-value=29 Score=29.27 Aligned_cols=45 Identities=7% Similarity=0.080 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCC
Q 043612 19 PEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDL 65 (327)
Q Consensus 19 ~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~l 65 (327)
.+-|.++++++++.+...+..||+.++ -+...|+.|-.+..+.++
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~lg--lS~~~v~~Ri~~L~~~Gi 51 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERVG--LSPSTVLRRIKRLEEEGV 51 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCc
Confidence 356889999999999888999999997 888888888776655554
No 129
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=20.19 E-value=1.2e+02 Score=26.56 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=25.8
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.|-...+||..| |-|...++.|....+..++.
T Consensus 146 ~~~s~~eIA~~l-gis~~tV~~~l~Rar~~Lr~ 177 (189)
T PRK12515 146 HEKSVEEVGEIV-GIPESTVKTRMFYARKKLAE 177 (189)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 466799999999 88999999888776666544
No 130
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=20.12 E-value=1e+02 Score=26.63 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=25.7
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.|....+||..| |-+...++.+....+..++.
T Consensus 146 ~g~s~~eIA~~l-~is~~tV~~~l~ra~~~Lr~ 177 (184)
T PRK12512 146 EGASIKETAAKL-SMSEGAVRVALHRGLAALAA 177 (184)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Confidence 467789999999 89999999888776666544
Done!