Query 043612
Match_columns 327
No_of_seqs 289 out of 1479
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 1.9E-35 6.5E-40 257.1 2.8 146 12-174 4-150 (159)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.5E-32 1.2E-36 221.3 8.3 102 12-114 2-103 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.2E-32 7.6E-37 224.0 6.5 103 14-117 1-103 (107)
4 3osg_A MYB21; transcription-DN 100.0 4.3E-32 1.5E-36 228.4 7.9 108 7-116 4-111 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 1.3E-31 4.5E-36 226.6 10.9 114 14-128 2-115 (131)
6 1h8a_C AMV V-MYB, MYB transfor 100.0 2.3E-31 7.9E-36 224.0 8.7 106 8-114 21-126 (128)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 3.9E-29 1.3E-33 217.3 7.4 106 8-114 52-157 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 3.3E-27 1.1E-31 198.6 3.5 118 40-174 1-119 (128)
9 2dim_A Cell division cycle 5-l 99.8 2.1E-21 7.2E-26 147.7 1.0 68 7-75 2-69 (70)
10 1gv2_A C-MYB, MYB proto-oncoge 99.8 1.2E-19 4E-24 147.3 3.1 95 64-174 1-96 (105)
11 3osg_A MYB21; transcription-DN 99.8 1.9E-19 6.6E-24 151.1 2.9 97 62-174 6-102 (126)
12 2k9n_A MYB24; R2R3 domain, DNA 99.7 3.7E-19 1.3E-23 145.4 1.4 91 67-173 1-92 (107)
13 3zqc_A MYB3; transcription-DNA 99.7 7.7E-19 2.6E-23 148.3 1.7 92 67-174 2-94 (131)
14 2dim_A Cell division cycle 5-l 99.7 1.1E-17 3.9E-22 127.0 7.1 65 62-140 4-69 (70)
15 2llk_A Cyclin-D-binding MYB-li 99.7 1.1E-17 3.8E-22 129.1 6.3 61 54-115 10-70 (73)
16 1ign_A Protein (RAP1); RAP1,ye 99.7 5.9E-18 2E-22 156.2 5.4 106 9-115 3-200 (246)
17 2juh_A Telomere binding protei 99.7 1.4E-17 4.8E-22 139.9 1.4 82 9-91 12-103 (121)
18 2roh_A RTBP1, telomere binding 99.6 9.3E-17 3.2E-21 135.1 3.6 79 9-88 26-114 (122)
19 2d9a_A B-MYB, MYB-related prot 99.6 1.2E-16 4.1E-21 117.8 2.5 57 9-66 3-59 (60)
20 1gvd_A MYB proto-oncogene prot 99.6 1.1E-16 3.6E-21 114.9 2.0 52 12-64 1-52 (52)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 1.4E-16 4.8E-21 114.1 1.4 52 12-64 1-52 (52)
22 1ity_A TRF1; helix-turn-helix, 99.6 2.9E-16 9.8E-21 119.0 2.5 63 9-71 5-68 (69)
23 2din_A Cell division cycle 5-l 99.6 1E-15 3.4E-20 115.0 5.3 55 60-115 2-56 (66)
24 2d9a_A B-MYB, MYB-related prot 99.6 2.4E-15 8.1E-20 110.8 5.9 51 62-112 3-54 (60)
25 1guu_A C-MYB, MYB proto-oncoge 99.6 2.9E-15 1E-19 107.2 6.1 49 65-113 1-50 (52)
26 2cu7_A KIAA1915 protein; nucle 99.6 3E-15 1E-19 114.4 6.1 57 61-117 3-59 (72)
27 1gvd_A MYB proto-oncogene prot 99.6 5.4E-15 1.9E-19 105.9 6.4 48 65-112 1-49 (52)
28 1w0t_A Telomeric repeat bindin 99.5 8.3E-15 2.8E-19 105.5 6.5 49 66-114 1-52 (53)
29 1x41_A Transcriptional adaptor 99.5 1.3E-14 4.4E-19 107.3 6.2 52 63-114 4-56 (60)
30 3sjm_A Telomeric repeat-bindin 99.5 1.8E-15 6.3E-20 113.7 1.2 56 11-66 8-64 (64)
31 1x41_A Transcriptional adaptor 99.5 2.4E-15 8.2E-20 111.2 1.8 55 9-64 3-57 (60)
32 3sjm_A Telomeric repeat-bindin 99.5 4.3E-14 1.5E-18 106.2 6.3 50 65-114 9-61 (64)
33 2elk_A SPCC24B10.08C protein; 99.5 5.1E-14 1.8E-18 103.5 6.4 50 63-112 5-56 (58)
34 1ity_A TRF1; helix-turn-helix, 99.5 2.9E-14 9.8E-19 108.0 5.1 54 61-114 4-60 (69)
35 2yum_A ZZZ3 protein, zinc fing 99.5 5.9E-15 2E-19 113.3 0.3 61 8-69 2-67 (75)
36 2elk_A SPCC24B10.08C protein; 99.5 1.2E-14 4E-19 106.9 1.8 52 10-61 5-56 (58)
37 1w0t_A Telomeric repeat bindin 99.5 9.9E-15 3.4E-19 105.1 1.2 50 13-62 1-51 (53)
38 2yum_A ZZZ3 protein, zinc fing 99.5 5.8E-14 2E-18 107.7 5.4 55 62-116 3-63 (75)
39 2din_A Cell division cycle 5-l 99.4 4.7E-15 1.6E-19 111.3 -0.8 58 8-68 3-60 (66)
40 2roh_A RTBP1, telomere binding 99.4 1.1E-13 3.7E-18 116.5 5.4 82 64-154 28-115 (122)
41 2cu7_A KIAA1915 protein; nucle 99.4 3E-14 1E-18 108.8 0.6 59 7-67 2-60 (72)
42 2juh_A Telomere binding protei 99.4 1.2E-13 4.1E-18 116.0 3.8 87 61-156 11-103 (121)
43 2ltp_A Nuclear receptor corepr 99.1 3E-14 1E-18 113.4 0.0 56 60-115 9-64 (89)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.4 5.5E-13 1.9E-17 102.8 5.6 54 63-116 14-71 (73)
45 2yus_A SWI/SNF-related matrix- 99.3 1.5E-12 5.2E-17 101.6 6.0 48 64-111 15-62 (79)
46 2ckx_A NGTRF1, telomere bindin 99.3 6.2E-13 2.1E-17 104.9 3.5 69 15-84 1-79 (83)
47 2aje_A Telomere repeat-binding 99.3 5.2E-13 1.8E-17 109.6 3.0 78 8-86 7-94 (105)
48 2llk_A Cyclin-D-binding MYB-li 99.3 5.2E-13 1.8E-17 102.9 2.0 61 3-67 12-72 (73)
49 2yus_A SWI/SNF-related matrix- 99.3 1.1E-12 3.7E-17 102.5 2.1 51 8-60 12-62 (79)
50 2aje_A Telomere repeat-binding 99.3 5.9E-12 2E-16 103.4 6.5 79 63-150 9-93 (105)
51 1x58_A Hypothetical protein 49 99.2 2.5E-11 8.5E-16 90.7 6.0 51 65-115 6-59 (62)
52 2ckx_A NGTRF1, telomere bindin 99.2 2.8E-11 9.5E-16 95.4 6.0 48 68-115 1-53 (83)
53 2ltp_A Nuclear receptor corepr 98.8 2.7E-12 9.2E-17 102.1 0.0 54 8-63 10-63 (89)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 3.3E-12 1.1E-16 98.4 0.2 54 8-62 12-68 (73)
55 2cjj_A Radialis; plant develop 99.1 3.6E-11 1.2E-15 96.7 5.0 50 66-115 7-60 (93)
56 1ign_A Protein (RAP1); RAP1,ye 99.1 1.3E-11 4.6E-16 114.0 2.6 70 64-148 5-80 (246)
57 2eqr_A N-COR1, N-COR, nuclear 98.9 3.9E-09 1.3E-13 78.1 6.4 47 66-112 11-57 (61)
58 2cjj_A Radialis; plant develop 98.8 3E-10 1E-14 91.3 0.0 48 13-61 7-57 (93)
59 3hm5_A DNA methyltransferase 1 98.8 3.1E-09 1.1E-13 85.4 4.6 64 51-118 18-86 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.7 9.3E-09 3.2E-13 78.9 5.3 51 64-115 5-59 (72)
61 1x58_A Hypothetical protein 49 98.7 3.3E-09 1.1E-13 79.2 1.4 49 12-62 6-57 (62)
62 2eqr_A N-COR1, N-COR, nuclear 98.7 5.2E-09 1.8E-13 77.4 2.2 53 6-60 4-56 (61)
63 1wgx_A KIAA1903 protein; MYB D 98.5 1E-07 3.5E-12 73.3 6.0 52 67-118 8-63 (73)
64 2iw5_B Protein corest, REST co 98.5 1.1E-07 3.9E-12 87.2 6.8 49 66-114 132-180 (235)
65 2xag_B REST corepressor 1; ami 98.5 1.3E-07 4.6E-12 95.1 5.8 44 68-111 381-424 (482)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.7E-08 1.3E-12 75.5 -0.1 51 11-63 5-58 (72)
67 1fex_A TRF2-interacting telome 98.4 4E-07 1.4E-11 67.1 4.9 47 67-113 2-58 (59)
68 1wgx_A KIAA1903 protein; MYB D 98.2 1.4E-07 4.9E-12 72.6 0.2 49 14-63 8-59 (73)
69 1fex_A TRF2-interacting telome 98.2 1.5E-07 5.2E-12 69.4 0.2 48 14-62 2-58 (59)
70 2lr8_A CAsp8-associated protei 97.4 3E-07 1E-11 69.6 0.0 49 69-118 16-67 (70)
71 2iw5_B Protein corest, REST co 98.1 6.5E-07 2.2E-11 82.2 1.6 50 11-62 130-179 (235)
72 1ug2_A 2610100B20RIK gene prod 98.1 3.3E-06 1.1E-10 67.3 5.0 50 68-117 34-86 (95)
73 2yqk_A Arginine-glutamic acid 97.9 2.1E-05 7E-10 58.4 6.4 47 63-109 5-52 (63)
74 4eef_G F-HB80.4, designed hema 97.9 2.6E-06 9E-11 65.5 1.0 43 67-109 20-66 (74)
75 4eef_G F-HB80.4, designed hema 97.9 2.4E-06 8.4E-11 65.6 0.5 44 14-58 20-66 (74)
76 1ofc_X ISWI protein; nuclear p 97.8 1.9E-05 6.5E-10 75.5 6.3 103 14-117 110-278 (304)
77 4iej_A DNA methyltransferase 1 97.7 4.8E-05 1.6E-09 61.0 5.7 59 56-118 23-86 (93)
78 2yqk_A Arginine-glutamic acid 97.6 2.1E-05 7.3E-10 58.4 2.4 51 7-59 2-53 (63)
79 4a69_C Nuclear receptor corepr 97.4 0.00022 7.5E-09 57.0 5.8 44 67-110 43-86 (94)
80 2crg_A Metastasis associated p 97.4 0.00028 9.4E-09 53.4 5.8 43 67-109 8-51 (70)
81 3hm5_A DNA methyltransferase 1 97.2 8E-05 2.8E-09 59.7 0.8 49 13-62 29-81 (93)
82 2ebi_A DNA binding protein GT- 97.2 0.00032 1.1E-08 54.4 4.1 55 66-120 3-71 (86)
83 2xag_B REST corepressor 1; ami 97.1 0.0001 3.5E-09 74.3 1.4 47 12-60 378-424 (482)
84 2ebi_A DNA binding protein GT- 96.9 6.2E-05 2.1E-09 58.5 -2.1 51 12-62 2-64 (86)
85 4b4c_A Chromodomain-helicase-D 96.9 0.00097 3.3E-08 59.3 5.3 106 10-116 3-198 (211)
86 4a69_C Nuclear receptor corepr 96.8 0.00032 1.1E-08 56.0 1.5 43 14-58 43-85 (94)
87 2crg_A Metastasis associated p 96.7 0.00058 2E-08 51.6 2.0 45 12-58 6-51 (70)
88 2y9y_A Imitation switch protei 96.3 0.0053 1.8E-07 60.1 6.6 105 14-118 123-295 (374)
89 2lr8_A CAsp8-associated protei 95.3 0.00071 2.4E-08 51.2 0.0 49 12-62 12-62 (70)
90 1ug2_A 2610100B20RIK gene prod 96.0 0.0015 5E-08 52.1 0.8 49 11-60 30-80 (95)
91 4iej_A DNA methyltransferase 1 93.8 0.015 5.2E-07 46.4 0.9 48 13-61 29-80 (93)
92 4b4c_A Chromodomain-helicase-D 93.5 0.057 2E-06 47.7 4.1 38 6-43 126-163 (211)
93 1irz_A ARR10-B; helix-turn-hel 92.1 0.31 1.1E-05 36.2 5.8 49 65-113 5-58 (64)
94 2xb0_X Chromo domain-containin 89.9 0.14 4.9E-06 47.9 2.6 28 15-42 169-196 (270)
95 1ofc_X ISWI protein; nuclear p 88.9 0.48 1.6E-05 45.1 5.4 40 67-106 110-150 (304)
96 1irz_A ARR10-B; helix-turn-hel 87.9 0.17 5.8E-06 37.7 1.3 50 10-59 3-55 (64)
97 2xb0_X Chromo domain-containin 85.0 0.62 2.1E-05 43.6 3.7 27 69-95 170-197 (270)
98 2o8x_A Probable RNA polymerase 57.1 9.9 0.00034 26.3 3.5 47 70-118 16-62 (70)
99 2y9y_A Imitation switch protei 51.1 22 0.00074 34.7 5.8 38 68-105 124-163 (374)
100 2p7v_B Sigma-70, RNA polymeras 49.8 17 0.00059 25.5 3.8 33 85-118 24-56 (68)
101 1ku3_A Sigma factor SIGA; heli 46.1 20 0.00068 25.5 3.7 45 70-116 11-59 (73)
102 2li6_A SWI/SNF chromatin-remod 45.4 15 0.00052 29.5 3.2 38 77-114 53-98 (116)
103 2jrz_A Histone demethylase jar 44.3 30 0.001 27.8 4.8 38 77-114 44-93 (117)
104 2lm1_A Lysine-specific demethy 41.3 35 0.0012 26.7 4.7 38 77-114 48-97 (107)
105 2eqy_A RBP2 like, jumonji, at 39.0 38 0.0013 27.4 4.7 39 77-115 46-96 (122)
106 2cxy_A BAF250B subunit, HBAF25 38.0 40 0.0014 27.3 4.7 39 77-115 55-105 (125)
107 2jxj_A Histone demethylase jar 37.3 28 0.00095 26.7 3.5 37 77-113 40-88 (96)
108 3hug_A RNA polymerase sigma fa 35.0 32 0.0011 25.6 3.4 43 74-117 41-83 (92)
109 3cz6_A DNA-binding protein RAP 34.0 32 0.0011 29.9 3.6 17 63-79 110-126 (168)
110 3i4p_A Transcriptional regulat 33.7 61 0.0021 26.7 5.3 56 73-131 3-59 (162)
111 2rq5_A Protein jumonji; develo 32.8 9.6 0.00033 31.3 0.1 45 36-83 65-113 (121)
112 1tty_A Sigma-A, RNA polymerase 31.4 51 0.0017 24.3 4.0 43 75-118 23-69 (87)
113 2kk0_A AT-rich interactive dom 30.3 62 0.0021 26.9 4.8 39 77-115 68-119 (145)
114 2rq5_A Protein jumonji; develo 29.5 68 0.0023 26.1 4.7 76 13-114 6-96 (121)
115 1x3u_A Transcriptional regulat 29.4 80 0.0027 22.1 4.7 45 70-117 17-61 (79)
116 1c20_A DEAD ringer protein; DN 27.5 77 0.0026 25.6 4.8 40 76-115 55-107 (128)
117 3c57_A Two component transcrip 27.5 75 0.0026 23.8 4.5 47 69-118 27-73 (95)
118 2yqf_A Ankyrin-1; death domain 27.0 1E+02 0.0034 24.2 5.3 34 71-105 14-47 (111)
119 1ig6_A MRF-2, modulator recogn 26.2 42 0.0014 26.3 2.8 38 77-114 37-87 (107)
120 1kkx_A Transcription regulator 25.8 37 0.0013 27.7 2.5 38 78-115 53-98 (123)
121 1je8_A Nitrate/nitrite respons 25.0 79 0.0027 23.0 4.1 47 69-118 21-67 (82)
122 2of5_H Leucine-rich repeat and 23.9 76 0.0026 25.3 4.0 30 75-105 13-42 (118)
123 1or7_A Sigma-24, RNA polymeras 23.8 74 0.0025 25.9 4.1 32 85-117 155-186 (194)
124 2e1c_A Putative HTH-type trans 23.7 86 0.0029 26.2 4.5 55 73-130 27-82 (171)
125 2o71_A Death domain-containing 22.3 94 0.0032 24.9 4.3 28 77-105 26-53 (115)
126 1u78_A TC3 transposase, transp 22.2 2.6E+02 0.009 21.3 7.6 87 15-105 5-97 (141)
127 2dbb_A Putative HTH-type trans 21.9 1.2E+02 0.004 24.2 4.9 41 73-114 9-50 (151)
128 1fse_A GERE; helix-turn-helix 21.8 1.1E+02 0.0038 20.9 4.2 47 68-117 10-56 (74)
129 3ulq_B Transcriptional regulat 21.4 1.3E+02 0.0045 22.5 4.7 48 66-116 26-73 (90)
130 3e7l_A Transcriptional regulat 21.1 1.4E+02 0.0048 20.6 4.6 33 72-105 18-50 (63)
131 3cz6_A DNA-binding protein RAP 20.8 52 0.0018 28.6 2.5 17 10-26 110-126 (168)
132 3i4p_A Transcriptional regulat 20.4 15 0.00053 30.4 -0.9 44 20-65 3-46 (162)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=1.9e-35 Score=257.10 Aligned_cols=146 Identities=26% Similarity=0.444 Sum_probs=95.6
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCC-CHH
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGN-RWA 90 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~-kW~ 90 (327)
+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 6789999999999999999999889999999999 99999999999999999999999999999999999999995 699
Q ss_pred HHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhhhhhccCCCCCCCCCCCCCCCCCHHH
Q 043612 91 QIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAE 170 (327)
Q Consensus 91 ~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~~~~~~g~~~~~~pa~~lp~~~~~~~ 170 (327)
.||..|+|||+.|||+||. ++|+|.+.+.+||.+||.+|+.++.++|..|..+ +..+|| ++.+.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~--------------~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~I-a~~l~g-Rt~~~ 146 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWH--------------NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI-AKLLPG-RTDNA 146 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHH--------------HTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHH-HTTSTT-CCHHH
T ss_pred HHHHHcCCCCHHHHHHHHH--------------HHhCccccccCCChHHHHHHHHHHHHHCCCHHHH-HHHCCC-CCHHH
Confidence 9999999999999996664 5678889999999999999999999999866555 788999 55556
Q ss_pred Hhhh
Q 043612 171 FKLN 174 (327)
Q Consensus 171 i~n~ 174 (327)
++|.
T Consensus 147 ~knr 150 (159)
T 1h89_C 147 IKNH 150 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=3.5e-32 Score=221.29 Aligned_cols=102 Identities=43% Similarity=0.797 Sum_probs=98.5
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ 91 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~ 91 (327)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 6799999999999999999999888999999998 999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHhhhhhhccc
Q 043612 92 IARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 92 IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
||+.|||||++|||+||+.+++.
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC-
T ss_pred HHHHcCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998765
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=2.2e-32 Score=223.99 Aligned_cols=103 Identities=30% Similarity=0.522 Sum_probs=99.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 043612 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIA 93 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA 93 (327)
||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHhhhhhhcccccC
Q 043612 94 RHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 94 ~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
+.|+|||++|||+||..+++.+.+
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999999999887544
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=4.3e-32 Score=228.43 Aligned_cols=108 Identities=33% Similarity=0.568 Sum_probs=102.6
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhC
Q 043612 7 CNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILG 86 (327)
Q Consensus 7 ~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G 86 (327)
.+++..++|+||+|||++|+++|.+||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 3577899999999999999999999997 8999999999 9999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612 87 NRWAQIARHLPGRTDNEKKLMSHEIVPALA 116 (327)
Q Consensus 87 ~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k 116 (327)
.+|+.||+.|+|||+.|||+||..+++.+.
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988753
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=1.3e-31 Score=226.65 Aligned_cols=114 Identities=30% Similarity=0.556 Sum_probs=103.4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 043612 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIA 93 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA 93 (327)
||+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||.|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHhhhhhhcccccCCCccccCCCCc
Q 043612 94 RHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCP 128 (327)
Q Consensus 94 ~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P 128 (327)
+.|+|||++|||+||..+++........-...+.|
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p 115 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence 99999999999999999887755443333333334
No 6
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=2.3e-31 Score=223.96 Aligned_cols=106 Identities=42% Similarity=0.771 Sum_probs=101.4
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 043612 8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGN 87 (327)
Q Consensus 8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~ 87 (327)
.++.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||.
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 34678999999999999999999999888999999999 99999999999999999999999999999999999999999
Q ss_pred CHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 88 RWAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 88 kW~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
+|+.||+.|||||++|||+||..+++.
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999998765
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=3.9e-29 Score=217.34 Aligned_cols=106 Identities=42% Similarity=0.763 Sum_probs=101.9
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 043612 8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGN 87 (327)
Q Consensus 8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~ 87 (327)
..+.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|.+++++||+|||++|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 35778899999999999999999999878999999999 99999999999999999999999999999999999999999
Q ss_pred CHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 88 RWAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 88 kW~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
+|+.||+.|||||+++||+||+.+++.
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999998765
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.93 E-value=3.3e-27 Score=198.60 Aligned_cols=118 Identities=24% Similarity=0.390 Sum_probs=85.5
Q ss_pred cccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 40 VPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 40 IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw---------- 69 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERW---------- 69 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHH----------
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHH----------
Confidence 788998 99999999999999999999999999999999999999995 699999999999999999555
Q ss_pred CccccCCCCccccCCCCCCCCchhhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612 119 PADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN 174 (327)
Q Consensus 119 ~~r~~N~L~P~i~~~~wt~eEd~lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~ 174 (327)
.++|+|.+.+.+||.+||.+|+.++.++|..|..+ +..+|| ++.++++|.
T Consensus 70 ----~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~I-a~~l~g-Rt~~~~k~r 119 (128)
T 1h8a_C 70 ----HNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI-AKLLPG-RTDNAVKNH 119 (128)
T ss_dssp ----HHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHH-GGGSTT-CCHHHHHHH
T ss_pred ----HHhcccccccccCCHHHHHHHHHHHHHHCcCHHHH-HHHCCC-CCHHHHHHH
Confidence 45778999999999999999999999999865554 788999 555566654
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-21 Score=147.67 Aligned_cols=68 Identities=29% Similarity=0.638 Sum_probs=65.0
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHH
Q 043612 7 CNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEA 75 (327)
Q Consensus 7 ~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED 75 (327)
+..+.+++++||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 356789999999999999999999999888999999999 99999999999999999999999999998
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.76 E-value=1.2e-19 Score=147.29 Aligned_cols=95 Identities=23% Similarity=0.341 Sum_probs=82.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchh
Q 043612 64 DLKRGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNL 142 (327)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~l 142 (327)
++++++||+|||++|+++|.+||. +|..||..|+|||+.||+.|| .+.|+|.+.+.+||.+||.+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw--------------~~~l~p~~~~~~Wt~eEd~~ 66 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW--------------HNHLNPEVKKTSWTEEEDRI 66 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH--------------HHTTCCCCCCCCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHH--------------HhccCCcccccCCCHHHHHH
Confidence 368999999999999999999996 799999999999999999555 45678999999999999999
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612 143 ILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN 174 (327)
Q Consensus 143 I~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~ 174 (327)
|+.++.++|..|..+ +..+|| ++.+.++|.
T Consensus 67 L~~~~~~~G~~W~~I-a~~l~g-Rt~~~~k~r 96 (105)
T 1gv2_A 67 IYQAHKRLGNRWAEI-AKLLPG-RTDNAIKNH 96 (105)
T ss_dssp HHHHHHHHSSCHHHH-HTTCTT-CCHHHHHHH
T ss_pred HHHHHHHhCCCHHHH-HHHcCC-CCHHHHHHH
Confidence 999999999765544 889999 555566553
No 11
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.75 E-value=1.9e-19 Score=151.15 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=83.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCch
Q 043612 62 RPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPN 141 (327)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~ 141 (327)
.+..++++||+|||++|+++|.+||.+|..||+.|+|||+.||+ +||.++|+|.+.+.+||.+||.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr--------------~Rw~~~l~p~~~~~~WT~eEd~ 71 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCR--------------DRWKNYLAPSISHTPWTAEEDA 71 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHH--------------HHHHHHTSTTSCCSCCCHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHH--------------HHHhhhcccccccccCCHHHHH
Confidence 45678999999999999999999999999999999999999999 4555677899999999999999
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612 142 LILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN 174 (327)
Q Consensus 142 lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~ 174 (327)
+|+.++..+|..|..+ +..+|| ++...++|.
T Consensus 72 ~L~~~v~~~G~~W~~I-a~~l~g-Rt~~~~k~r 102 (126)
T 3osg_A 72 LLVQKIQEYGRQWAII-AKFFPG-RTDIHIKNR 102 (126)
T ss_dssp HHHHHHHHHCSCHHHH-HTTSTT-CCHHHHHHH
T ss_pred HHHHHHHHHCcCHHHH-HHHcCC-CCHHHHHHH
Confidence 9999999999765554 789999 455555543
No 12
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.73 E-value=3.7e-19 Score=145.40 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=79.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhh
Q 043612 67 RGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILN 145 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~ 145 (327)
|++||+|||++|+++|.+||. +|..||..|+|||+.||+ +||.++|+|.+.+.+||.+||.+|+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr--------------~Rw~~~L~p~i~~~~WT~eEd~~L~~ 66 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCR--------------ERWNNYINPALRTDPWSPEEDMLLDQ 66 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHH--------------HHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHH--------------HHHHHHHcccccccccCHHHHHHHHH
Confidence 689999999999999999995 899999999999999999 55556788999999999999999999
Q ss_pred hhhccCCCCCCCCCCCCCCCCCHHHHhh
Q 043612 146 SHQQDHQFHLPSPPPMFHNNFDQAEFKL 173 (327)
Q Consensus 146 ~~~~~g~~~~~~pa~~lp~~~~~~~i~n 173 (327)
++..+|..|..+ +..+|| ++.+.++|
T Consensus 67 ~~~~~G~~W~~I-a~~l~g-Rt~~~~k~ 92 (107)
T 2k9n_A 67 KYAEYGPKWNKI-SKFLKN-RSDNNIRN 92 (107)
T ss_dssp HHHHTCSCHHHH-HHHHSS-SCHHHHHH
T ss_pred HHHHhCcCHHHH-HHHCCC-CCHHHHHH
Confidence 999999865544 788999 55555555
No 13
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.72 E-value=7.7e-19 Score=148.28 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=80.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhh
Q 043612 67 RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILN 145 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~ 145 (327)
||+||+|||++|+++|.+|| .+|..||..|+|||+.||+ +||.++|+|.+.+++||.+||.+|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr--------------~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCR--------------ERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHH--------------HHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHH--------------HHHhhccCccccCCCCCHHHHHHHHH
Confidence 78999999999999999999 6899999999999999999 55667788999999999999999999
Q ss_pred hhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612 146 SHQQDHQFHLPSPPPMFHNNFDQAEFKLN 174 (327)
Q Consensus 146 ~~~~~g~~~~~~pa~~lp~~~~~~~i~n~ 174 (327)
++..+|..|..+ +..+||++ .+.++|.
T Consensus 68 ~~~~~G~~W~~I-a~~l~gRt-~~~~k~r 94 (131)
T 3zqc_A 68 NYLKLGSKWSVI-AKLIPGRT-DNAIKNR 94 (131)
T ss_dssp HHHHSCSCHHHH-TTTSTTCC-HHHHHHH
T ss_pred HHHHHCcCHHHH-HHHcCCCC-HHHHHHH
Confidence 999999876555 78999955 4455543
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=127.02 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=60.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCc
Q 043612 62 RPDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNP 140 (327)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd 140 (327)
.+.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||| .||.++|+|.+++.+||.+||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr--------------~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCK--------------ARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHH--------------HHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHH--------------HHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999 666788999999999999997
No 15
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=129.11 Aligned_cols=61 Identities=23% Similarity=0.323 Sum_probs=49.6
Q ss_pred cccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 54 RLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 54 r~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
--||.++|+|.+++++||+|||++|+++|++||++|++||+.| |||++|||+||+.|.+..
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKDTC 70 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSCCC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999999999999999999999999 999999999999876653
No 16
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.70 E-value=5.9e-18 Score=156.21 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=92.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCC-----ccccccccccccccccccccceecccCCCC-----------------
Q 043612 9 KQKVKRGLWSPEEDEKLINYVTTYGHGC-----WSSVPKHAGLQRCGKSCRLRWINYLRPDLK----------------- 66 (327)
Q Consensus 9 K~k~kkg~WT~EEDe~L~~lV~kyg~~n-----W~~IA~~l~~gRt~~QCr~Rw~~~L~p~lk----------------- 66 (327)
.+.+++++||+|||++|+++|+++|..+ |..||+.|+ |||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4567899999999999999999998643 999999999 99999999999999999886
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 043612 67 ------------RGSFSPQEAALIIELHSI-L------------------------------------------------ 85 (327)
Q Consensus 67 ------------kg~WT~EED~~Ll~lV~~-~------------------------------------------------ 85 (327)
|..||.|||-.|...+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 889999999999998877 1
Q ss_pred -----C----CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 86 -----G----NRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 86 -----G----~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
| ..|.+||+.+|+||..++|+||+.+++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 15999999999999999999999988764
No 17
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.65 E-value=1.4e-17 Score=139.95 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=77.1
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccccceeccc-----CCCCCC-CCCHHHHHHH
Q 043612 9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHA----GLQRCGKSCRLRWINYLR-----PDLKRG-SFSPQEAALI 78 (327)
Q Consensus 9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l----~~gRt~~QCr~Rw~~~L~-----p~lkkg-~WT~EED~~L 78 (327)
+++.++++||.|||+.|+++|++||.++|..|++.+ + +||..||++||.++++ |.++++ +|++||+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 467889999999999999999999998999999985 5 9999999999999998 999999 9999999999
Q ss_pred HHHHHHhCCCHHH
Q 043612 79 IELHSILGNRWAQ 91 (327)
Q Consensus 79 l~lV~~~G~kW~~ 91 (327)
++++..+|++|++
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999976
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.63 E-value=9.3e-17 Score=135.11 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=73.0
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccccceecc-----cCCCCCCCCCHHH-HHHH
Q 043612 9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHA----GLQRCGKSCRLRWINYL-----RPDLKRGSFSPQE-AALI 78 (327)
Q Consensus 9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l----~~gRt~~QCr~Rw~~~L-----~p~lkkg~WT~EE-D~~L 78 (327)
+.+.++++||.|||+.|+++|++||.++|..|++.+ . +||..||++||.+++ +|.++++.|+++| +++|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 456789999999999999999999998999999964 5 899999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCC
Q 043612 79 IELHSILGNR 88 (327)
Q Consensus 79 l~lV~~~G~k 88 (327)
++++..+|++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999964
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.2e-16 Score=117.80 Aligned_cols=57 Identities=26% Similarity=0.557 Sum_probs=53.8
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCC
Q 043612 9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLK 66 (327)
Q Consensus 9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lk 66 (327)
.+.+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4678999999999999999999999878999999999 99999999999999999875
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.61 E-value=1.1e-16 Score=114.86 Aligned_cols=52 Identities=46% Similarity=0.929 Sum_probs=49.4
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCC
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~ 64 (327)
+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999888999999999 999999999999999984
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=1.4e-16 Score=114.13 Aligned_cols=52 Identities=31% Similarity=0.640 Sum_probs=48.2
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCC
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~ 64 (327)
+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999878999999999 999999999999999984
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=2.9e-16 Score=119.02 Aligned_cols=63 Identities=29% Similarity=0.439 Sum_probs=58.2
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccccccccccceecccCCCCCCCCC
Q 043612 9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGL-QRCGKSCRLRWINYLRPDLKRGSFS 71 (327)
Q Consensus 9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~-gRt~~QCr~Rw~~~L~p~lkkg~WT 71 (327)
+++.++++||+|||++|+++|.+||.++|..||+.|+. +|++.||++||.++|++.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56788999999999999999999998889999999976 8999999999999999999987653
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=114.96 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=51.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 60 YLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
+|+|.+++++||.|||++|+++|+++|.+|.+||+ ++|||++|||+||..+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChH
Confidence 68999999999999999999999999999999999 88999999999999887654
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=2.4e-15 Score=110.81 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=46.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhc
Q 043612 62 RPDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIV 112 (327)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~il 112 (327)
+|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||..++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 5678999999999999999999999 69999999999999999996666543
No 25
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.57 E-value=2.9e-15 Score=107.20 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612 65 LKRGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIVP 113 (327)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~ilr 113 (327)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||..++.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999997 89999999999999999988887654
No 26
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.56 E-value=3e-15 Score=114.38 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=53.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 61 LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.+|.+++++||+|||++|+++|.+||.+|..||+.|+|||++|||+||..+++....
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999999999999999998877543
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.55 E-value=5.4e-15 Score=105.91 Aligned_cols=48 Identities=31% Similarity=0.566 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhc
Q 043612 65 LKRGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIV 112 (327)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~il 112 (327)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||..++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 47899999999999999999996 6999999999999999997776554
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=8.3e-15 Score=105.54 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHhhhhhhccc
Q 043612 66 KRGSFSPQEAALIIELHSILG-NRWAQIARHLP--GRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp--gRT~~qcK~Rw~~ilr~ 114 (327)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.|||+||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998764
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.3e-14 Score=107.25 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=47.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 63 PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
+.+.+++||+|||++|+++|++|| ++|.+||+.|+|||+.|||+||..++..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 567899999999999999999999 7999999999999999999999876543
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.51 E-value=1.8e-15 Score=113.66 Aligned_cols=56 Identities=27% Similarity=0.502 Sum_probs=49.0
Q ss_pred CCcccCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccccccccccceecccCCCC
Q 043612 11 KVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGL-QRCGKSCRLRWINYLRPDLK 66 (327)
Q Consensus 11 k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~-gRt~~QCr~Rw~~~L~p~lk 66 (327)
..+|++||+|||++|+++|.+||.++|..||+.++. +||+.||++||.++++++++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 356889999999999999999999899999997542 89999999999999988763
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=2.4e-15 Score=111.18 Aligned_cols=55 Identities=18% Similarity=0.482 Sum_probs=51.3
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCC
Q 043612 9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64 (327)
Q Consensus 9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~ 64 (327)
.+.+.+++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3578899999999999999999999888999999999 999999999999998764
No 32
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.48 E-value=4.3e-14 Score=106.19 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHhhhhhhccc
Q 043612 65 LKRGSFSPQEAALIIELHSILG-NRWAQIARHLP--GRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp--gRT~~qcK~Rw~~ilr~ 114 (327)
.+|++||+|||++|+++|++|| ++|.+||+.++ |||+.|||+||+.+++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~ 61 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 61 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhcc
Confidence 4789999999999999999999 58999999865 99999999999988764
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=5.1e-14 Score=103.49 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=45.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHhhhhhhc
Q 043612 63 PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLP-GRTDNEKKLMSHEIV 112 (327)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp-gRT~~qcK~Rw~~il 112 (327)
..+.+++||+|||++|+++|++|| ++|.+||+.|+ |||+.|||.||..+.
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 356788999999999999999999 89999999999 999999999998753
No 34
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.47 E-value=2.9e-14 Score=107.97 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=48.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHhhhhhhccc
Q 043612 61 LRPDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLP--GRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp--gRT~~qcK~Rw~~ilr~ 114 (327)
..+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.|||+||..+++.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 45667899999999999999999999 69999999999 99999999888776554
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.9e-15 Score=113.28 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=55.9
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCC-----CCccccccccccccccccccccceecccCCCCCCC
Q 043612 8 NKQKVKRGLWSPEEDEKLINYVTTYGH-----GCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGS 69 (327)
Q Consensus 8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~-----~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~ 69 (327)
.++.+.++.||+|||++|+++|.+||. .+|..||+.|+ +||+.||+.||+++|.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 468889999999999999999999996 67999999999 99999999999999998777664
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=1.2e-14 Score=106.95 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=47.4
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecc
Q 043612 10 QKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61 (327)
Q Consensus 10 ~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L 61 (327)
..+.+++||+|||++|+++|++||.++|..||+.|+.+||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3466889999999999999999998899999999987899999999998765
No 37
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.45 E-value=9.9e-15 Score=105.13 Aligned_cols=50 Identities=34% Similarity=0.566 Sum_probs=46.5
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccccccccccceeccc
Q 043612 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGL-QRCGKSCRLRWINYLR 62 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~-gRt~~QCr~Rw~~~L~ 62 (327)
++++||+|||++|+++|.+||.++|..||+.|+. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999976 6999999999998875
No 38
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.8e-14 Score=107.72 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=49.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612 62 RPDLKRGSFSPQEAALIIELHSILG------NRWAQIARHLPGRTDNEKKLMSHEIVPALA 116 (327)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~lV~~~G------~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k 116 (327)
+|.+.+++||+|||++|+++|.+|| .+|.+||+.|+|||+.|||+||..++..+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999 689999999999999999999977666543
No 39
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.7e-15 Score=111.28 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=53.1
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCC
Q 043612 8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRG 68 (327)
Q Consensus 8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg 68 (327)
..|.+++++||+|||++|+++++.||. +|..||+ ++ |||+.||+.||.++|++.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 468899999999999999999999997 7999999 77 8999999999999999877654
No 40
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.42 E-value=1.1e-13 Score=116.47 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=69.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCC
Q 043612 64 DLKRGSFSPQEAALIIELHSILGN-RWAQIARHL----PGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNT 138 (327)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~e 138 (327)
..++++||.|||+.|+++|++||. +|+.|++.+ +|||+.+||+||+.+++.. .++|.+.+..|+++
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~---------~~~p~~kr~~~~p~ 98 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA---------SIAPQQRRGAPVPQ 98 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH---------HSCTTTCCCSSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc---------cCCccccCCCCCCH
Confidence 457889999999999999999995 999999973 8999999999999988753 35667777888888
Q ss_pred C-chhhhhhhhccCCCC
Q 043612 139 N-PNLILNSHQQDHQFH 154 (327)
Q Consensus 139 E-d~lI~~~~~~~g~~~ 154 (327)
| +..|+.+|..+|+..
T Consensus 99 e~~~~v~~~h~~~g~~~ 115 (122)
T 2roh_A 99 ELLDRVLAAQAYWSVDS 115 (122)
T ss_dssp HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 8 678889998777654
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=3e-14 Score=108.84 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=53.9
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCC
Q 043612 7 CNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKR 67 (327)
Q Consensus 7 ~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkk 67 (327)
+..+.+++++||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999997 7999999999 999999999999998876655
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.39 E-value=1.2e-13 Score=116.00 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=70.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCC-C
Q 043612 61 LRPDLKRGSFSPQEAALIIELHSILGN-RWAQIARH----LPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGF-F 134 (327)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~----lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~-~ 134 (327)
+.+..++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+.+++... +.|.+.+. +
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~---------~~p~~krg~~ 81 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS---------IAPQQRRGEP 81 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH---------TCSTTCCCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc---------cCCcccCCCC
Confidence 455678899999999999999999996 99999998 489999999999999987532 33455555 6
Q ss_pred CCCCCchhhhhhhhccCCCCCC
Q 043612 135 SLNTNPNLILNSHQQDHQFHLP 156 (327)
Q Consensus 135 wt~eEd~lI~~~~~~~g~~~~~ 156 (327)
|.++++..|+.+|..+|+.+..
T Consensus 82 ~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 82 VPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHccchhc
Confidence 7777778889999877765554
No 43
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.09 E-value=3e-14 Score=113.35 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=52.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 60 YLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
.+++.+.+++||.|||++|+++|.+||.+|..||..|+|||++|||+||..+++.+
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999887764
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=5.5e-13 Score=102.78 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=49.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612 63 PDLKRGSFSPQEAALIIELHSILG----NRWAQIARHLPGRTDNEKKLMSHEIVPALA 116 (327)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G----~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k 116 (327)
+...+++||.|||.+|++++.+|| .+|.+||+.|||||..|||+||..|+..+.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence 356788999999999999999999 679999999999999999999999987654
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=101.63 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612 64 DLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEI 111 (327)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~i 111 (327)
...+++||+|||++|+++|++||.+|.+||+.|++||..|||.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999876
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.32 E-value=6.2e-13 Score=104.87 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=60.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccceecc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 043612 15 GLWSPEEDEKLINYVTTYGHGCWSSVPKH----AGLQRCGKSCRLRWINYL-----RPDLKRG-SFSPQEAALIIELHSI 84 (327)
Q Consensus 15 g~WT~EEDe~L~~lV~kyg~~nW~~IA~~----l~~gRt~~QCr~Rw~~~L-----~p~lkkg-~WT~EED~~Ll~lV~~ 84 (327)
++||+|||++|+++|++||.++|..|++. |+ +||+.||++||.+++ +|.++++ +...+...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999995 77 999999999999988 5665554 6788888888888764
No 47
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.31 E-value=5.2e-13 Score=109.61 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=65.8
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccccceecc-----cCCCCCCCCCHHHHHH-
Q 043612 8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHA----GLQRCGKSCRLRWINYL-----RPDLKRGSFSPQEAAL- 77 (327)
Q Consensus 8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l----~~gRt~~QCr~Rw~~~L-----~p~lkkg~WT~EED~~- 77 (327)
.+++.++++||.|||+.|+++|++||.++|..|++.+ + +||..+|++||.+++ +|.+++|.-+++|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 4578889999999999999999999998999999965 5 999999999999998 6888898877776544
Q ss_pred HHHHHHHhC
Q 043612 78 IIELHSILG 86 (327)
Q Consensus 78 Ll~lV~~~G 86 (327)
++++...+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 667666544
No 48
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.30 E-value=5.2e-13 Score=102.93 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=48.0
Q ss_pred CCCccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCC
Q 043612 3 HHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKR 67 (327)
Q Consensus 3 R~~c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkk 67 (327)
|......|.+++++||+|||++|++++.+||.+ |..||+.| |||+.||+.||.. |....+.
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 334456789999999999999999999999975 99999999 7999999999974 5544443
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.26 E-value=1.1e-12 Score=102.46 Aligned_cols=51 Identities=24% Similarity=0.522 Sum_probs=47.0
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612 8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60 (327)
Q Consensus 8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~ 60 (327)
.+....+++||+|||++|+++|++|| ++|..||++|+ +||+.||+.||.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 34556689999999999999999999 78999999999 99999999999987
No 50
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.26 E-value=5.9e-12 Score=103.37 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCC
Q 043612 63 PDLKRGSFSPQEAALIIELHSILGN-RWAQIARHL----PGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLN 137 (327)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~ 137 (327)
...++++||.|||+.|+++|++||. +|+.|++.+ +|||+.+||+||+.+++... ++|.+.+..-++
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~---------~~p~~~rg~~~P 79 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK---------ISPQQRRGEPVP 79 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT---------CCTTTTTCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc---------CCcccccCCCCC
Confidence 4567899999999999999999996 999999965 89999999999999987643 345555555555
Q ss_pred CCchh-hhhhhhcc
Q 043612 138 TNPNL-ILNSHQQD 150 (327)
Q Consensus 138 eEd~l-I~~~~~~~ 150 (327)
.+--. |+++|+.+
T Consensus 80 ~~~l~rv~~~~~~~ 93 (105)
T 2aje_A 80 QELLNRVLNAHGYW 93 (105)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44333 44555443
No 51
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=2.5e-11 Score=90.68 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHh---hCCCCCHHHHHhhhhhhcccc
Q 043612 65 LKRGSFSPQEAALIIELHSILGNRWAQIAR---HLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~---~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
..+.+||+|||+.|+++|++||.+|..|+. ++++||..++|+||+.|.+..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 367899999999999999999999999994 679999999999999998764
No 52
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.17 E-value=2.8e-11 Score=95.41 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHhhhhhhcccc
Q 043612 68 GSFSPQEAALIIELHSILGN-RWAQIARH----LPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~-kW~~IA~~----lpgRT~~qcK~Rw~~ilr~~ 115 (327)
++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+.+++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999996 89999999999999988754
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.79 E-value=2.7e-12 Score=102.07 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=49.7
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccC
Q 043612 8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRP 63 (327)
Q Consensus 8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p 63 (327)
..+.+++|+||+|||++|+++|..||. +|..||+.|+ |||+.||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 456788999999999999999999997 6999999999 99999999999998764
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.16 E-value=3.3e-12 Score=98.43 Aligned_cols=54 Identities=13% Similarity=0.441 Sum_probs=48.0
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccceeccc
Q 043612 8 NKQKVKRGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAGLQRCGKSCRLRWINYLR 62 (327)
Q Consensus 8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~ 62 (327)
.+....++.||+|||++|++++.+||. .+|.+||+.|+ |||..||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 455677899999999999999999993 46999999999 9999999999998664
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.13 E-value=3.6e-11 Score=96.65 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 66 KRGSFSPQEAALIIELHSILG----NRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G----~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
.+++||.|||++|++++.+|| .+|.+||+.|||||.+|||+||..++..+
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 57999999999999999999999987664
No 56
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.12 E-value=1.3e-11 Score=113.95 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCC
Q 043612 64 DLKRGSFSPQEAALIIELHSILGNR------WAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLN 137 (327)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G~k------W~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~ 137 (327)
.+.+++||+|||++|+++|+++|++ |.+||+.|+|||++|||+||+.+++.. +. ..|+.
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~--------------ln-~vy~~ 69 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR--------------LE-YVYEV 69 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG--------------CC-CEECB
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh--------------cc-ccccc
Confidence 5678999999999999999999875 999999999999999998888766553 22 22555
Q ss_pred CCchhhhhhhh
Q 043612 138 TNPNLILNSHQ 148 (327)
Q Consensus 138 eEd~lI~~~~~ 148 (327)
+++..|+..+.
T Consensus 70 ded~~Li~d~~ 80 (246)
T 1ign_A 70 DKFGKLVRDDD 80 (246)
T ss_dssp CTTSCBCBCTT
T ss_pred CcchhhhhccC
Confidence 66666655554
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3.9e-09 Score=78.11 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhc
Q 043612 66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIV 112 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~il 112 (327)
..++||+||++++++++.+||.+|..||..|++||..||+.+|..-.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999987543
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.85 E-value=3e-10 Score=91.27 Aligned_cols=48 Identities=15% Similarity=0.352 Sum_probs=43.0
Q ss_pred cccCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccceecc
Q 043612 13 KRGLWSPEEDEKLINYVTTYG---HGCWSSVPKHAGLQRCGKSCRLRWINYL 61 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~kyg---~~nW~~IA~~l~~gRt~~QCr~Rw~~~L 61 (327)
.++.||.|||++|.+++.+|+ ...|.+||+.|+ |||..||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 367899999999999999997 346999999999 999999999998764
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.80 E-value=3.1e-09 Score=85.39 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=57.5
Q ss_pred ccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHhhhhhhcccccCC
Q 043612 51 KSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHL-----PGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 51 ~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~l-----pgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
.=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.+.+...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4477899999875 89999999999999999999999999998 5899999999999998876544
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.74 E-value=9.3e-09 Score=78.86 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 64 DLKRGSFSPQEAALIIELHSILG----NRWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 64 ~lkkg~WT~EED~~Ll~lV~~~G----~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
..+.+.||.|||++|.+++.+|+ .+|.+||+.| |||..+|+.||+.+....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999997 5699999998 999999999999987764
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.69 E-value=3.3e-09 Score=79.24 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=43.9
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccc---cccccccccccccccceeccc
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVP---KHAGLQRCGKSCRLRWINYLR 62 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA---~~l~~gRt~~QCr~Rw~~~L~ 62 (327)
.++++||+|||+.|+++|++||. +|..|+ .++. +||...+++||.++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 46889999999999999999997 799999 4666 9999999999998654
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=5.2e-09 Score=77.40 Aligned_cols=53 Identities=9% Similarity=0.149 Sum_probs=47.3
Q ss_pred ccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612 6 CCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60 (327)
Q Consensus 6 c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~ 60 (327)
.+.+.+...+.||+||++++.+++.+|| ++|..||..|+ +||..||+.+|...
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 3556777889999999999999999999 57999999999 99999999998653
No 63
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.54 E-value=1e-07 Score=73.34 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 67 RGSFSPQEAALIIELHSILGN----RWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~----kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
...||.+|+.+|.+++..|+. +|.+||..|+|||..+|+.||..+++...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~ 63 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQ 63 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccc
Confidence 458999999999999999983 5999999999999999999999987765443
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.52 E-value=1.1e-07 Score=87.20 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
..++||.||++++++++.+||++|..||+.|++||..|||++|....++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999876554
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.45 E-value=1.3e-07 Score=95.08 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612 68 GSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEI 111 (327)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~i 111 (327)
..||.||-+++++++.+||.+|..||+.+++||..|||..|...
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999988653
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.38 E-value=3.7e-08 Score=75.52 Aligned_cols=51 Identities=12% Similarity=0.232 Sum_probs=43.8
Q ss_pred CCcccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccceecccC
Q 043612 11 KVKRGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAGLQRCGKSCRLRWINYLRP 63 (327)
Q Consensus 11 k~kkg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p 63 (327)
+.+++.||.|||++|.+++.+|+. ..|.+||+.+ |||..||+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 445779999999999999999973 4599999997 59999999999876543
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.36 E-value=4e-07 Score=67.14 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-HHHHHh-hCCCCCHHHHHhhhhhhcc
Q 043612 67 RGSFSPQEAALIIELHSIL--------GNR-WAQIAR-HLPGRTDNEKKLMSHEIVP 113 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~--------G~k-W~~IA~-~lpgRT~~qcK~Rw~~ilr 113 (327)
|.+||.|||+.|++.|.++ |++ |.++|+ .++++|-.+||+||.+.++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 433 999999 7999999999999987654
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.24 E-value=1.4e-07 Score=72.57 Aligned_cols=49 Identities=24% Similarity=0.490 Sum_probs=43.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccceecccC
Q 043612 14 RGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAGLQRCGKSCRLRWINYLRP 63 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p 63 (327)
...||.+|+++|.+++..|+. ++|..||..++ +||..+|+.||..++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 467999999999999999975 46999999999 99999999999876543
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.23 E-value=1.5e-07 Score=69.40 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=42.7
Q ss_pred ccCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccccccccccccccceeccc
Q 043612 14 RGLWSPEEDEKLINYVTTY--------GHGCWSSVPK-HAGLQRCGKSCRLRWINYLR 62 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~ky--------g~~nW~~IA~-~l~~gRt~~QCr~Rw~~~L~ 62 (327)
|.+||.|||+.|++.|.+| |..-|+.+|+ .++ ++|..+||+||.+.|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4445999999 788 9999999999998774
No 70
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.43 E-value=3e-07 Score=69.64 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 69 SFSPQEAALIIELHSILGN---RWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G~---kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
.||.|||+.|+..+++-|. .|+.||+.| +||.+|+++||+.|++-+...
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~kS 67 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLFEKS 67 (70)
Confidence 6999999999999999996 799999999 999999999999998876554
No 71
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.11 E-value=6.5e-07 Score=82.18 Aligned_cols=50 Identities=18% Similarity=0.381 Sum_probs=45.0
Q ss_pred CCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceeccc
Q 043612 11 KVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR 62 (327)
Q Consensus 11 k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~ 62 (327)
.....+||.||++++++++.+|| ++|..||+.++ +||..||+.+|.++..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34578999999999999999999 57999999999 9999999999987653
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.08 E-value=3.3e-06 Score=67.33 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 68 GSFSPQEAALIIELHSILGN---RWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~---kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
--||.|||+.|+...++-|. .|+.||+.|.+|+.+|+++||+.|++.+.+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999996 799999999999999999999998887644
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=2.1e-05 Score=58.44 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHhhhh
Q 043612 63 PDLKRGSFSPQEAALIIELHSILGNRWAQIAR-HLPGRTDNEKKLMSH 109 (327)
Q Consensus 63 p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~-~lpgRT~~qcK~Rw~ 109 (327)
|.+....||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 56677899999999999999999999999999 599999999997765
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.88 E-value=2.6e-06 Score=65.47 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHhhhh
Q 043612 67 RGSFSPQEAALIIELHSILGN----RWAQIARHLPGRTDNEKKLMSH 109 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~----kW~~IA~~lpgRT~~qcK~Rw~ 109 (327)
.+.||.||+++|..++..|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 6999999999999999998875
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.86 E-value=2.4e-06 Score=65.65 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=39.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCC---Cccccccccccccccccccccce
Q 043612 14 RGLWSPEEDEKLINYVTTYGHG---CWSSVPKHAGLQRCGKSCRLRWI 58 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~---nW~~IA~~l~~gRt~~QCr~Rw~ 58 (327)
.+.||.||+++|.+++..|+.+ .|.+||+.+| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5689999999999999999653 6999999999 999999999985
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.84 E-value=1.9e-05 Score=75.45 Aligned_cols=103 Identities=14% Similarity=0.238 Sum_probs=80.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------cceec--------------------------
Q 043612 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRL-------RWINY-------------------------- 60 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~-------Rw~~~-------------------------- 60 (327)
-+.||..|...++.++.+||..+|..||..|+ ++|...++. ||..+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999998 888765422 22110
Q ss_pred ----------------cc-CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHh------------hCCCCCHHHHHhh
Q 043612 61 ----------------LR-PDLKRGSFSPQEAALIIELHSILGN----RWAQIAR------------HLPGRTDNEKKLM 107 (327)
Q Consensus 61 ----------------L~-p~lkkg~WT~EED~~Ll~lV~~~G~----kW~~IA~------------~lpgRT~~qcK~R 107 (327)
+. +..+...||++||..|+-.+.+||- .|..|.. ++..||+.++..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 00 1223468999999999999999994 4999973 3467999999999
Q ss_pred hhhhcccccC
Q 043612 108 SHEIVPALAS 117 (327)
Q Consensus 108 w~~ilr~~k~ 117 (327)
=..|++.+.+
T Consensus 269 c~tLi~~iek 278 (304)
T 1ofc_X 269 CNTLITLIER 278 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887633
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.71 E-value=4.8e-05 Score=60.96 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=49.9
Q ss_pred cceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHhhhhhhcccccCC
Q 043612 56 RWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLP-----GRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 56 Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lp-----gRT~~qcK~Rw~~ilr~~k~~ 118 (327)
.|..+|. ...||.||...|++|+++|+-+|..|+.... .||-.++|.||..+.+.+...
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445554 3689999999999999999999999999873 799999999999988876543
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=2.1e-05 Score=58.36 Aligned_cols=51 Identities=10% Similarity=0.166 Sum_probs=45.2
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccccccccccee
Q 043612 7 CNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPK-HAGLQRCGKSCRLRWIN 59 (327)
Q Consensus 7 ~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~-~l~~gRt~~QCr~Rw~~ 59 (327)
+..|+.....||+||-++..+++.+||. +|..|++ .++ +|+..||.+-|..
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 4567888899999999999999999995 7999999 588 9999999987753
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.41 E-value=0.00022 Score=56.99 Aligned_cols=44 Identities=23% Similarity=0.083 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhh
Q 043612 67 RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHE 110 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ 110 (327)
...||+||.++..++...||.+|..||..|++||..+|..-|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999987754
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.38 E-value=0.00028 Score=53.44 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHhhhh
Q 043612 67 RGSFSPQEAALIIELHSILGNRWAQIAR-HLPGRTDNEKKLMSH 109 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~-~lpgRT~~qcK~Rw~ 109 (327)
...||+||-.+..+++.+||.+|..|++ .|++||..+|..-|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 599999999997776
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.17 E-value=8e-05 Score=59.68 Aligned_cols=49 Identities=10% Similarity=0.270 Sum_probs=42.4
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccceeccc
Q 043612 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAG----LQRCGKSCRLRWINYLR 62 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~----~gRt~~QCr~Rw~~~L~ 62 (327)
....||.||+..|.+++++|+.+ |..|+..+. .+||..++++||..+..
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999965 999999983 27999999999987543
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.16 E-value=0.00032 Score=54.43 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----------CCHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCc
Q 043612 66 KRGSFSPQEAALIIELHSILG----------NRWAQIARHL----PGRTDNEKKLMSHEIVPALASFPA 120 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G----------~kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~ 120 (327)
+...||.+|-..||+++..+. ..|..||..| -.||+.||+.+|..|.+.-+...+
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999997632 1399999987 369999999999999988766543
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.13 E-value=0.0001 Score=74.25 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=42.7
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~ 60 (327)
....+||.||-+++++++.+||. +|..||+.++ +||..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34689999999999999999995 7999999999 99999999988753
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.90 E-value=6.2e-05 Score=58.53 Aligned_cols=51 Identities=20% Similarity=0.509 Sum_probs=40.6
Q ss_pred CcccCCCHHHHHHHHHHHHHhCC------C---Cccccccccc---cccccccccccceeccc
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGH------G---CWSSVPKHAG---LQRCGKSCRLRWINYLR 62 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~------~---nW~~IA~~l~---~gRt~~QCr~Rw~~~L~ 62 (327)
.+...||.+|-..|+.+...... . -|..||..|. ..||+.||+.+|.++..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999976411 1 4999999864 47999999999987543
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.90 E-value=0.00097 Score=59.30 Aligned_cols=106 Identities=10% Similarity=0.115 Sum_probs=68.6
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhC--CCCccccccc--cccccccccccc-------ccee-------------------
Q 043612 10 QKVKRGLWSPEEDEKLINYVTTYG--HGCWSSVPKH--AGLQRCGKSCRL-------RWIN------------------- 59 (327)
Q Consensus 10 ~k~kkg~WT~EEDe~L~~lV~kyg--~~nW~~IA~~--l~~gRt~~QCr~-------Rw~~------------------- 59 (327)
|+-....||..|-..|++++.+|| .+.|..|++. +. +|+...++. +...
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKV 81 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 455677899999999999999999 5679999764 33 454332211 0000
Q ss_pred -------------------------ccc--------------------CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHH
Q 043612 60 -------------------------YLR--------------------PDLKRGSFSPQEAALIIELHSILG-NRWAQIA 93 (327)
Q Consensus 60 -------------------------~L~--------------------p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA 93 (327)
.|. +......||.+||..|+..+.+|| ++|.+|-
T Consensus 82 ~~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir 161 (211)
T 4b4c_A 82 KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK 161 (211)
T ss_dssp -CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence 000 000123599999999999999999 8999998
Q ss_pred hhC--------------CCCCHHHHHhhhhhhccccc
Q 043612 94 RHL--------------PGRTDNEKKLMSHEIVPALA 116 (327)
Q Consensus 94 ~~l--------------pgRT~~qcK~Rw~~ilr~~k 116 (327)
... ..+++..+..|-..|++.+.
T Consensus 162 ~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~ 198 (211)
T 4b4c_A 162 MDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS 198 (211)
T ss_dssp HCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred hChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence 732 12456678888777666553
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.83 E-value=0.00032 Score=55.99 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=39.6
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccce
Q 043612 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWI 58 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~ 58 (327)
...||+||.+++.+++..|| ++|..||+.++ +||..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence 57899999999999999999 57999999999 999999998764
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.70 E-value=0.00058 Score=51.63 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=40.0
Q ss_pred CcccCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccce
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPK-HAGLQRCGKSCRLRWI 58 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~-~l~~gRt~~QCr~Rw~ 58 (327)
.....||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|.
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 34668999999999999999995 7999999 588 999999988775
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.32 E-value=0.0053 Score=60.06 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=78.4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------cceec--------------------------
Q 043612 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRL-------RWINY-------------------------- 60 (327)
Q Consensus 14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~-------Rw~~~-------------------------- 60 (327)
-+.||.-|=..++.++.+||..+-..||..|+.+++...++. ||..+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999853566443321 11110
Q ss_pred --------------c----cCC-CCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhh------------CCCCCHHHHH
Q 043612 61 --------------L----RPD-LKRGSFSPQEAALIIELHSILG----NRWAQIARH------------LPGRTDNEKK 105 (327)
Q Consensus 61 --------------L----~p~-lkkg~WT~EED~~Ll~lV~~~G----~kW~~IA~~------------lpgRT~~qcK 105 (327)
| .+. .+...||.+||..|+-++.+|| +.|..|-.. +..||+.++.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 011 1345799999999999999999 459999553 3579999999
Q ss_pred hhhhhhcccccCC
Q 043612 106 LMSHEIVPALASF 118 (327)
Q Consensus 106 ~Rw~~ilr~~k~~ 118 (327)
.|=..|++.+.+-
T Consensus 283 rRc~tLi~~IeKE 295 (374)
T 2y9y_A 283 RRGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887543
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.25 E-value=0.00071 Score=51.24 Aligned_cols=49 Identities=10% Similarity=0.212 Sum_probs=41.6
Q ss_pred CcccCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccceeccc
Q 043612 12 VKRGLWSPEEDEKLINYVTTYGH--GCWSSVPKHAGLQRCGKSCRLRWINYLR 62 (327)
Q Consensus 12 ~kkg~WT~EEDe~L~~lV~kyg~--~nW~~IA~~l~~gRt~~QCr~Rw~~~L~ 62 (327)
-.--.||.|||..|+..+++-|. .-|..||+.++ |++.|+..||..++.
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK 62 (70)
Confidence 34457999999999999999886 24999999884 999999999987654
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.02 E-value=0.0015 Score=52.15 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=42.3
Q ss_pred CCcccCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccceec
Q 043612 11 KVKRGLWSPEEDEKLINYVTTYGH--GCWSSVPKHAGLQRCGKSCRLRWINY 60 (327)
Q Consensus 11 k~kkg~WT~EEDe~L~~lV~kyg~--~nW~~IA~~l~~gRt~~QCr~Rw~~~ 60 (327)
.-+--.||.|||..++...++.|. .-|..||+.++ +|+..|+++||+.+
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 344567999999999999999975 35999999998 99999999999763
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.84 E-value=0.015 Score=46.45 Aligned_cols=48 Identities=10% Similarity=0.279 Sum_probs=40.3
Q ss_pred cccCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccceecc
Q 043612 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAG----LQRCGKSCRLRWINYL 61 (327)
Q Consensus 13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~----~gRt~~QCr~Rw~~~L 61 (327)
+...||.||...|.+++++|..+ |-.|+.... ..|+..+.++||..+.
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999965 999998774 2688888999987654
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.51 E-value=0.057 Score=47.71 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=30.7
Q ss_pred ccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccc
Q 043612 6 CCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKH 43 (327)
Q Consensus 6 c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~ 43 (327)
+..++......||.+||..|+.+|.+||.++|..|-.-
T Consensus 126 ~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 126 CHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 33444444567999999999999999999999998763
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.12 E-value=0.31 Score=36.24 Aligned_cols=49 Identities=10% Similarity=-0.028 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHhhhhhhcc
Q 043612 65 LKRGSFSPQEAALIIELHSILGNR---WAQIARHL--PGRTDNEKKLMSHEIVP 113 (327)
Q Consensus 65 lkkg~WT~EED~~Ll~lV~~~G~k---W~~IA~~l--pgRT~~qcK~Rw~~ilr 113 (327)
..+-.||+|.-+..+++|.++|.. +..|.+.| +|.|..+|+-+.+...-
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 346689999999999999999944 88999885 78999999976655433
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.86 E-value=0.14 Score=47.93 Aligned_cols=28 Identities=43% Similarity=0.833 Sum_probs=26.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCcccccc
Q 043612 15 GLWSPEEDEKLINYVTTYGHGCWSSVPK 42 (327)
Q Consensus 15 g~WT~EEDe~L~~lV~kyg~~nW~~IA~ 42 (327)
..|+.+||..|+..|-+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999975
No 95
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=88.92 E-value=0.48 Score=45.15 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHh
Q 043612 67 RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKL 106 (327)
Q Consensus 67 kg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~ 106 (327)
-+.||..|...++.++.+|| ..|..||..|+|+|..+|+.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~ 150 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE 150 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHH
Confidence 35799999999999999999 47999999999999999863
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.88 E-value=0.17 Score=37.72 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=37.4
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhCCCC--cccccccccc-cccccccccccee
Q 043612 10 QKVKRGLWSPEEDEKLINYVTTYGHGC--WSSVPKHAGL-QRCGKSCRLRWIN 59 (327)
Q Consensus 10 ~k~kkg~WT~EEDe~L~~lV~kyg~~n--W~~IA~~l~~-gRt~~QCr~Rw~~ 59 (327)
.+..+-.||+|.-+++.++|+..|... ++.|.+.|+. |.|..+++.+.++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 355678899999999999999999432 6788887763 5677777665543
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=84.95 E-value=0.62 Score=43.61 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHhC-CCHHHHHhh
Q 043612 69 SFSPQEAALIIELHSILG-NRWAQIARH 95 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G-~kW~~IA~~ 95 (327)
.|+.+||..|+..|.+|| +.|.+|..-
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 499999999999999999 789999864
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.14 E-value=9.9 Score=26.35 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 70 FSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 70 WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
+++ .+..++.++...|..+.+||..+ |-+...++.+....+..++..
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHC-
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 554 44455556556788999999999 889999998887777766554
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=51.11 E-value=22 Score=34.71 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC-CCCHHHHH
Q 043612 68 GSFSPQEAALIIELHSILGN-RWAQIARHLP-GRTDNEKK 105 (327)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~-kW~~IA~~lp-gRT~~qcK 105 (327)
+.||.-|=..++.++.+||. .-..||..|. |+|..+|+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~ 163 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR 163 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH
Confidence 57999999999999999994 5999999997 99999987
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.80 E-value=17 Score=25.48 Aligned_cols=33 Identities=6% Similarity=0.108 Sum_probs=28.1
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
.|..+.+||+.+ |-|...++.+....++.++..
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 467899999999 899999999888887777654
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=46.11 E-value=20 Score=25.52 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612 70 FSPQEAALIIELHSI----LGNRWAQIARHLPGRTDNEKKLMSHEIVPALA 116 (327)
Q Consensus 70 WT~EED~~Ll~lV~~----~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k 116 (327)
.++.|- .++.+.-. .|..|.+||..+ |-|...++.+....++.++
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 444444 44444443 567899999999 8999999988877777766
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=45.41 E-value=15 Score=29.50 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=28.3
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 77 LIIELHSILG--------NRWAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 77 ~Ll~lV~~~G--------~kW~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
.|..+|.+.| +.|.+||..|.--.+..+|..|.+++-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 3777888887 3599999997444478888888876544
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=44.33 E-value=30 Score=27.82 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCC----HHHHHhhhhhhccc
Q 043612 77 LIIELHSILG--------NRWAQIARHLPGRT----DNEKKLMSHEIVPA 114 (327)
Q Consensus 77 ~Ll~lV~~~G--------~kW~~IA~~lpgRT----~~qcK~Rw~~ilr~ 114 (327)
.|..+|.+.| +.|.+||..|.--. +.++|..|.+++-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777888887 35999999983322 56788888776544
No 104
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=41.29 E-value=35 Score=26.70 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=26.6
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCC----HHHHHhhhhhhccc
Q 043612 77 LIIELHSILG--------NRWAQIARHLPGRT----DNEKKLMSHEIVPA 114 (327)
Q Consensus 77 ~Ll~lV~~~G--------~kW~~IA~~lpgRT----~~qcK~Rw~~ilr~ 114 (327)
.|..+|.+.| +.|.+||..|.--. +.++|..|.+++-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4677777777 36999999983322 46788888776543
No 105
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.98 E-value=38 Score=27.42 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=27.2
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCC--C--HHHHHhhhhhhcccc
Q 043612 77 LIIELHSILG--------NRWAQIARHLPGR--T--DNEKKLMSHEIVPAL 115 (327)
Q Consensus 77 ~Ll~lV~~~G--------~kW~~IA~~lpgR--T--~~qcK~Rw~~ilr~~ 115 (327)
+|..+|.+.| +.|.+|+..|.-- + +.++|..|.+++-..
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4777788877 3599999998332 1 357888887765543
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=37.99 E-value=40 Score=27.32 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=27.5
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCC----HHHHHhhhhhhcccc
Q 043612 77 LIIELHSILG--------NRWAQIARHLPGRT----DNEKKLMSHEIVPAL 115 (327)
Q Consensus 77 ~Ll~lV~~~G--------~kW~~IA~~lpgRT----~~qcK~Rw~~ilr~~ 115 (327)
.|..+|.+.| +.|.+||..|.--+ +.++|..|.+++-..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4777788877 36999999983322 457888887766554
No 107
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=37.34 E-value=28 Score=26.71 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=25.4
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCC----CHHHHHhhhhhhcc
Q 043612 77 LIIELHSILG--------NRWAQIARHLPGR----TDNEKKLMSHEIVP 113 (327)
Q Consensus 77 ~Ll~lV~~~G--------~kW~~IA~~lpgR----T~~qcK~Rw~~ilr 113 (327)
.|..+|.+.| +.|.+||..|.-- .+.++|..|.+++-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 3667777776 3599999997321 25678887876553
No 108
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=35.01 E-value=32 Score=25.59 Aligned_cols=43 Identities=33% Similarity=0.232 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 74 EAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 74 ED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.+..++.++...|..-.+||+.+ |-+...++.|....++.++.
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 34445555556678899999999 89999999888777666544
No 109
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.96 E-value=32 Score=29.92 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=14.1
Q ss_pred CCCCCCCCCHHHHHHHH
Q 043612 63 PDLKRGSFSPQEAALII 79 (327)
Q Consensus 63 p~lkkg~WT~EED~~Ll 79 (327)
|.-..|-||.|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 44578999999999886
No 110
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.70 E-value=61 Score=26.68 Aligned_cols=56 Identities=13% Similarity=-0.011 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCcccc
Q 043612 73 QEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEV 131 (327)
Q Consensus 73 EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~ 131 (327)
+-|.+|+++.++.| -.|.+||+.+ |=|...|+.|.+.+.....= .++.-.++|...
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i--~~~~a~~~~~~l 59 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI--RRRVALLDPVKV 59 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS--CCCCCCCCTTTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe--eeceeeeCHHHh
Confidence 45788888888877 4699999999 89999999999998777532 345555555543
No 111
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=32.81 E-value=9.6 Score=31.30 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=32.7
Q ss_pred Ccccccccccccccc----ccccccceecccCCCCCCCCCHHHHHHHHHHHH
Q 043612 36 CWSSVPKHAGLQRCG----KSCRLRWINYLRPDLKRGSFSPQEAALIIELHS 83 (327)
Q Consensus 36 nW~~IA~~l~~gRt~----~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~ 83 (327)
.|..||..|+...+. ...+..|.++|.+- ...+++|-+.|.+-|+
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 599999999754432 35677888888752 2478899988887765
No 112
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.40 E-value=51 Score=24.28 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=31.7
Q ss_pred HHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 75 AALIIELHSI----LGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 75 D~~Ll~lV~~----~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
+..++.+.-. .|..+.+||..+ |-|...++.+-...++.++..
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Confidence 3444444443 467899999999 899999998887777776654
No 113
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=30.28 E-value=62 Score=26.94 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=27.8
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCC--CC---CHHHHHhhhhhhcccc
Q 043612 77 LIIELHSILG--------NRWAQIARHLP--GR---TDNEKKLMSHEIVPAL 115 (327)
Q Consensus 77 ~Ll~lV~~~G--------~kW~~IA~~lp--gR---T~~qcK~Rw~~ilr~~ 115 (327)
.|..+|.+.| +.|.+||..|. .. .+.++|..|.+++-..
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 4777888887 35999999983 22 2567888888766554
No 114
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=29.51 E-value=68 Score=26.12 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=45.8
Q ss_pred cccCCCHHHH--HHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhC----
Q 043612 13 KRGLWSPEED--EKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILG---- 86 (327)
Q Consensus 13 kkg~WT~EED--e~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G---- 86 (327)
-+.+|.+.+. +.|.+..++.|.. .+.+.. ++ ||. || =-+|..+|.+.|
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P~-i~-gk~-----------lD------------L~~Ly~~V~~~GG~~~ 59 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGIT-MDELPL-IG-GCE-----------LD------------LACFFRLINEMGGMQQ 59 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCC-CSSCCE-ET-TEE-----------CC------------HHHHHHHHHHTTSHHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCCC-CCCCCc-CC-CEe-----------cc------------HHHHHHHHHHcCcHHH
Confidence 3567987775 3455566666643 444443 23 221 11 124778888888
Q ss_pred ----CCHHHHHhhC--CCC---CHHHHHhhhhhhccc
Q 043612 87 ----NRWAQIARHL--PGR---TDNEKKLMSHEIVPA 114 (327)
Q Consensus 87 ----~kW~~IA~~l--pgR---T~~qcK~Rw~~ilr~ 114 (327)
+.|.+||..| +.- ....+|..|.+++-.
T Consensus 60 Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 60 VTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 3599999998 322 245788878776544
No 115
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=29.39 E-value=80 Score=22.14 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 70 FSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 70 WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
+|+.|-+.| .++ ..|..-.+||..+ |-+...++.+...+++.+..
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 555555554 444 5678899999999 88999999888877777654
No 116
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=27.49 E-value=77 Score=25.61 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=28.2
Q ss_pred HHHHHHHHHhC--------CCHHHHHhhCC--CC---CHHHHHhhhhhhcccc
Q 043612 76 ALIIELHSILG--------NRWAQIARHLP--GR---TDNEKKLMSHEIVPAL 115 (327)
Q Consensus 76 ~~Ll~lV~~~G--------~kW~~IA~~lp--gR---T~~qcK~Rw~~ilr~~ 115 (327)
-.|..+|.+.| +.|.+||..|. .. .+.++|..|.+++-..
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 34778888887 35999999983 22 2567888888766543
No 117
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.49 E-value=75 Score=23.84 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 69 SFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
..|+.|-+.|.- + ..|..-.+||..+ |-+...++.+...+++++...
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcCC
Confidence 477777666555 4 7788899999999 889999998888887776543
No 118
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=27.00 E-value=1e+02 Score=24.16 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 71 SPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 71 T~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
+..-+..|..+....|..|..+|+.| |=+..++.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 66677888888899999999999999 77777665
No 119
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=26.18 E-value=42 Score=26.28 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=25.9
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCC--C---CHHHHHhhhhhhccc
Q 043612 77 LIIELHSILG--------NRWAQIARHLPG--R---TDNEKKLMSHEIVPA 114 (327)
Q Consensus 77 ~Ll~lV~~~G--------~kW~~IA~~lpg--R---T~~qcK~Rw~~ilr~ 114 (327)
.|..+|.+.| +.|.+||..|.- . .+.++|..|..++-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4677777777 369999999732 1 235688777766544
No 120
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=25.80 E-value=37 Score=27.67 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612 78 IIELHSILGN--------RWAQIARHLPGRTDNEKKLMSHEIVPAL 115 (327)
Q Consensus 78 Ll~lV~~~G~--------kW~~IA~~lpgRT~~qcK~Rw~~ilr~~ 115 (327)
|..+|.+.|+ .|.+||..|.--.+..+|..|.+++-..
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 6667777662 4999999974444889999898876654
No 121
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.04 E-value=79 Score=23.03 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612 69 SFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASF 118 (327)
Q Consensus 69 ~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~ 118 (327)
..|+.|-+.|.- + ..|..-.+||+.+ |-+...++.+...+++++...
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcCC
Confidence 477777666555 4 5688899999999 889999998888777776543
No 122
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=23.95 E-value=76 Score=25.29 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 75 AALIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 75 D~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
|..|..+.+..|..|..+|+.+ |=+..++.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 4567778888999999999999 77777654
No 123
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=23.75 E-value=74 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=25.7
Q ss_pred hCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 85 LGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 85 ~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
.|-+..+||+.+ |-+...++.|....+..++.
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Confidence 467799999999 88999999887776666544
No 124
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=23.68 E-value=86 Score=26.25 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccc
Q 043612 73 QEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEE 130 (327)
Q Consensus 73 EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i 130 (327)
+-|..|+.+.++.| ..+.+||+.+ |-+...|+.|.+.+..... -.++.-.++|..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~--I~~~~a~vd~~~ 82 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV--IKKFTAIIDPEA 82 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS--SCCCCCCCCGGG
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC--eEeeeEEECHHH
Confidence 45677888888777 5799999999 7899999999988876643 233444455543
No 125
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=22.27 E-value=94 Score=24.87 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 77 LIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 77 ~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
.|..++...|..|..+|+.+ |=+..++.
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 56667888999999999998 66666544
No 126
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.16 E-value=2.6e+02 Score=21.26 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=51.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc---cceec--ccCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 043612 15 GLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRL---RWINY--LRPDLKRGSFSPQEAALIIELHSILGNRW 89 (327)
Q Consensus 15 g~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~---Rw~~~--L~p~lkkg~WT~EED~~Ll~lV~~~G~kW 89 (327)
...|.++-..++.++. -|. .-..||+.++ .+...++. +|... .....+....|.+++..|+.+...-+-.=
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 4578888877777763 453 4788999887 43333322 22211 01112234688998888888733322345
Q ss_pred HHHHhhCCC-CCHHHHH
Q 043612 90 AQIARHLPG-RTDNEKK 105 (327)
Q Consensus 90 ~~IA~~lpg-RT~~qcK 105 (327)
.+|+..+.- -+...+.
T Consensus 81 ~~i~~~lg~~~s~~tV~ 97 (141)
T 1u78_A 81 RDIRNELQLSASKRTIL 97 (141)
T ss_dssp HHHHHHTTCCSCHHHHH
T ss_pred HHHHHHHCCCccHHHHH
Confidence 788888821 4556665
No 127
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.94 E-value=1.2e+02 Score=24.22 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612 73 QEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPA 114 (327)
Q Consensus 73 EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~ 114 (327)
+-|..|+.+.++.| -.+.+||+.+ |=+...++.|.+.+...
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 44667778877776 5799999999 78999999888887655
No 128
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.76 E-value=1.1e+02 Score=20.90 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612 68 GSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS 117 (327)
Q Consensus 68 g~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~ 117 (327)
..+|+.|-+.|.- + ..|..-.+||+.+ |-+...++.+...+.+.+..
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHCC
Confidence 4577777766655 4 5677899999999 88999999888877766543
No 129
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.44 E-value=1.3e+02 Score=22.50 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612 66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALA 116 (327)
Q Consensus 66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k 116 (327)
.....|+.|-+.|.-++ .|..-.+||..| |-+...++.+...+++++.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 34468888877665554 788899999999 8899999988888777653
No 130
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.14 E-value=1.4e+02 Score=20.64 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 043612 72 PQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105 (327)
Q Consensus 72 ~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK 105 (327)
.-|.+.|.++...+|+++++.|+.+ |=+...+.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~ 50 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLY 50 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHH
Confidence 3577888999999999999999988 54555554
No 131
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.84 E-value=52 Score=28.63 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=14.2
Q ss_pred CCCcccCCCHHHHHHHH
Q 043612 10 QKVKRGLWSPEEDEKLI 26 (327)
Q Consensus 10 ~k~kkg~WT~EEDe~L~ 26 (327)
|.-.+|-||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 44568999999999886
No 132
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=20.40 E-value=15 Score=30.44 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCC
Q 043612 20 EEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDL 65 (327)
Q Consensus 20 EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~l 65 (327)
+-|.+|+.++++.+.-.|.+||+.++ -+...|+.|..+..+.++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 45888999999888888999999997 677778777776655443
Done!