Query 043613
Match_columns 90
No_of_seqs 110 out of 1005
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hba_A BL17, 50S ribosomal pro 99.9 7.9E-28 2.7E-32 148.4 3.4 52 39-90 1-52 (52)
2 3bbo_J Ribosomal protein L9; l 99.9 2.5E-26 8.4E-31 171.2 0.8 63 27-89 38-100 (197)
3 1div_A Ribosomal protein L9; r 99.9 1.5E-24 5E-29 155.0 3.1 51 39-89 1-51 (149)
4 3v2d_I 50S ribosomal protein L 99.9 1.5E-24 5E-29 154.9 2.6 51 39-89 1-51 (148)
5 3r8s_H 50S ribosomal protein L 99.9 1.5E-24 5.2E-29 154.9 0.0 51 39-89 1-51 (149)
6 1nkw_F 50S ribosomal protein L 99.9 1.4E-23 4.8E-28 149.5 4.6 50 39-89 1-50 (146)
7 2z1c_A Hydrogenase expression/ 63.5 2.9 9.9E-05 26.5 1.4 30 37-70 26-55 (75)
8 2vl6_A SSO MCM N-TER, minichro 45.8 18 0.00062 26.2 3.3 29 37-65 211-239 (268)
9 1ltl_A DNA replication initiat 44.1 19 0.00066 26.4 3.3 28 37-64 198-225 (279)
10 2kbn_A Conserved protein; nucl 38.2 24 0.00082 22.5 2.7 30 37-67 46-77 (109)
11 1m93_A Serine proteinase inhib 35.9 14 0.00049 21.2 1.2 20 11-30 4-24 (55)
12 1o7i_A SSB, SSO2364, single st 35.6 31 0.0011 22.0 2.9 30 38-67 50-79 (119)
13 2k75_A Uncharacterized protein 34.9 28 0.00094 22.2 2.6 27 38-67 50-76 (106)
14 2ot2_A Hydrogenase isoenzymes 29.7 23 0.00078 23.0 1.5 34 37-70 26-61 (90)
15 3e0e_A Replication protein A; 27.1 58 0.002 20.2 3.1 30 37-67 49-79 (97)
16 4afx_A Protein Z dependent pro 25.6 26 0.0009 27.0 1.4 26 4-29 59-84 (387)
17 3d3r_A Hydrogenase assembly ch 22.2 31 0.001 23.1 1.1 31 37-70 49-79 (103)
18 4ajt_A Protein Z-dependent pro 22.0 34 0.0012 26.8 1.4 26 4-29 63-88 (427)
19 4dy0_A GLIA-derived nexin; ser 21.8 37 0.0013 25.7 1.6 25 5-29 14-39 (379)
20 1wjj_A Hypothetical protein F2 21.8 40 0.0014 23.3 1.6 31 37-67 73-103 (145)
21 3f1s_A Protein Z-dependent pro 21.2 36 0.0012 25.8 1.4 26 4-29 21-46 (385)
No 1
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=99.94 E-value=7.9e-28 Score=148.36 Aligned_cols=52 Identities=31% Similarity=0.446 Sum_probs=50.3
Q ss_pred eEEEEeccccccCCCCcEEEecCcceecccccccccccchHHHHHHHHHhhC
Q 043613 39 LEVILTTKVDKLGKVGETVKVAPGYFHNHLMPKLLAVLNIEKFAHLIREQRR 90 (90)
Q Consensus 39 m~VILl~dV~gLGk~GdvV~Vk~GYARN~LiP~glA~~At~~~~~~l~~~~~ 90 (90)
|+|||++||++||++||+|+|++|||||||||+|+|++||++++++++.+++
T Consensus 1 MkVIL~~dV~~lG~~Gdvv~V~~GYaRN~LiP~g~A~~AT~~n~~~~~~~~~ 52 (52)
T 2hba_A 1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQ 52 (52)
T ss_dssp CEEEESSCBTTTBCTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHHC
T ss_pred CEEEEcccccccCcCCCEEEEcCCceehhhccCCceeeCCHHHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999999998864
No 2
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.91 E-value=2.5e-26 Score=171.15 Aligned_cols=63 Identities=27% Similarity=0.372 Sum_probs=49.3
Q ss_pred heeeecceeeeeeEEEEeccccccCCCCcEEEecCcceecccccccccccchHHHHHHHHHhh
Q 043613 27 LLFSCQGVKYRRLEVILTTKVDKLGKVGETVKVAPGYFHNHLMPKLLAVLNIEKFAHLIREQR 89 (90)
Q Consensus 27 ~~~~~q~~r~~km~VILl~dV~gLGk~GdvV~Vk~GYARN~LiP~glA~~At~~~~~~l~~~~ 89 (90)
+++.+++.+.++|+|||++||+|||++||+|+|++|||||||||+|+|++||++++++++.++
T Consensus 38 lvv~~~k~~~k~MkVILledV~~LGk~GdvV~Vk~GYARNfLiP~glAv~AT~~nlk~~e~~~ 100 (197)
T 3bbo_J 38 FEVVSQKKAKKLRKVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMED 100 (197)
T ss_dssp ------------CCCCCCSCSSSSCSSCCCSCCCSSSCCCCCTTTTCCCCCCHHHHHHHHTTT
T ss_pred EEEEeccccCCceEEEEcccccccCCCCCEEEEcCcceeehcccCCceecCCHHHHHHHHHhH
Confidence 777999999999999999999999999999999999999999999999999999999987764
No 3
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=99.89 E-value=1.5e-24 Score=155.02 Aligned_cols=51 Identities=31% Similarity=0.413 Sum_probs=49.0
Q ss_pred eEEEEeccccccCCCCcEEEecCcceecccccccccccchHHHHHHHHHhh
Q 043613 39 LEVILTTKVDKLGKVGETVKVAPGYFHNHLMPKLLAVLNIEKFAHLIREQR 89 (90)
Q Consensus 39 m~VILl~dV~gLGk~GdvV~Vk~GYARN~LiP~glA~~At~~~~~~l~~~~ 89 (90)
|+|||++||+|||++||+|+|+||||||||||+|+|++||++++++++.++
T Consensus 1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~ 51 (149)
T 1div_A 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQK 51 (149)
T ss_dssp CEEEECSBSSSBGGGTEEEECCTTHHHHTTTTTTSEEECCHHHHHHHHHHH
T ss_pred CEEEEcccccccCCCCCEEEEcCCceeeeeccCCceecCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999987765
No 4
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=99.89 E-value=1.5e-24 Score=154.89 Aligned_cols=51 Identities=39% Similarity=0.634 Sum_probs=49.1
Q ss_pred eEEEEeccccccCCCCcEEEecCcceecccccccccccchHHHHHHHHHhh
Q 043613 39 LEVILTTKVDKLGKVGETVKVAPGYFHNHLMPKLLAVLNIEKFAHLIREQR 89 (90)
Q Consensus 39 m~VILl~dV~gLGk~GdvV~Vk~GYARN~LiP~glA~~At~~~~~~l~~~~ 89 (90)
|+|||++||+|||+.||+|+|+||||||||||+|+|++||+.++++++.++
T Consensus 1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~g~A~~AT~~n~k~~e~~~ 51 (148)
T 3v2d_I 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARI 51 (148)
T ss_dssp CEEEESSCBTTTBSTTCEEECCHHHHHHTTGGGTSEEECCHHHHHHHHHHH
T ss_pred CeEEEccccccCCCCccEEEEcCCceehhhcccCchhhcCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999988764
No 5
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=99.88 E-value=1.5e-24 Score=154.92 Aligned_cols=51 Identities=37% Similarity=0.580 Sum_probs=48.8
Q ss_pred eEEEEeccccccCCCCcEEEecCcceecccccccccccchHHHHHHHHHhh
Q 043613 39 LEVILTTKVDKLGKVGETVKVAPGYFHNHLMPKLLAVLNIEKFAHLIREQR 89 (90)
Q Consensus 39 m~VILl~dV~gLGk~GdvV~Vk~GYARN~LiP~glA~~At~~~~~~l~~~~ 89 (90)
|+|||++||++||+.||+|+|+||||||||||+|+|++||+.++++++.++
T Consensus 1 MkVIL~~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~k~~e~~~ 51 (149)
T 3r8s_H 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARR 51 (149)
T ss_dssp CCCEESSCCTTTCCSSCBCCCCHHHHTTTTSSSSSEECCCSHHHHHHHHHH
T ss_pred CeEEEecccccCCCCCCEEEEcCcceehhhccCCceeeCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999887765
No 6
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=99.88 E-value=1.4e-23 Score=149.51 Aligned_cols=50 Identities=38% Similarity=0.536 Sum_probs=48.0
Q ss_pred eEEEEeccccccCCCCcEEEecCcceecccccccccccchHHHHHHHHHhh
Q 043613 39 LEVILTTKVDKLGKVGETVKVAPGYFHNHLMPKLLAVLNIEKFAHLIREQR 89 (90)
Q Consensus 39 m~VILl~dV~gLGk~GdvV~Vk~GYARN~LiP~glA~~At~~~~~~l~~~~ 89 (90)
|+|||++| +|||++||+|+|+||||||||||+|+|++||++++++++.++
T Consensus 1 MkVIL~~d-~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~ 50 (146)
T 1nkw_F 1 MQVILLEP-SRLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQL 50 (146)
T ss_pred CeEEEeec-CCCCCCCCEEEEcCcceehhcccCCceecCCHHHHHHHHHHH
Confidence 89999999 999999999999999999999999999999999999988765
No 7
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=63.48 E-value=2.9 Score=26.47 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=23.4
Q ss_pred eeeEEEEeccccccCCCCcEEEecCcceeccccc
Q 043613 37 RRLEVILTTKVDKLGKVGETVKVAPGYFHNHLMP 70 (90)
Q Consensus 37 ~km~VILl~dV~gLGk~GdvV~Vk~GYARN~LiP 70 (90)
+.+.+-|+.|+ ..||.|-|.-|||.+.+=+
T Consensus 26 r~V~l~Lv~~~----~vGD~VLVH~GfAi~~ide 55 (75)
T 2z1c_A 26 REVRLDLMPDT----KPGDWVIVHTGFAIEKLDE 55 (75)
T ss_dssp EEEECTTSTTC----CTTCEEEEETTEEEEEECH
T ss_pred EEEEEEEeCCC----CCCCEEEEecchhhhhCCH
Confidence 45666677665 6899999999999986543
No 8
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=45.82 E-value=18 Score=26.19 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=24.7
Q ss_pred eeeEEEEeccccccCCCCcEEEecCccee
Q 043613 37 RRLEVILTTKVDKLGKVGETVKVAPGYFH 65 (90)
Q Consensus 37 ~km~VILl~dV~gLGk~GdvV~Vk~GYAR 65 (90)
+.|.|+|..|.-+.-+.||.|.|.-=|-.
T Consensus 211 rsi~v~l~~dLvd~~~PGDrV~vtGI~~~ 239 (268)
T 2vl6_A 211 RQLEIILEDDLVDSARPGDRVKVTGILDI 239 (268)
T ss_dssp CEEEEEEEGGGTTSSCTTCEEEEEEEEEE
T ss_pred cEEEEEEccCccCcccCCCEEEEEEEEEE
Confidence 67999999999999999999998765543
No 9
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=44.06 E-value=19 Score=26.37 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.4
Q ss_pred eeeEEEEeccccccCCCCcEEEecCcce
Q 043613 37 RRLEVILTTKVDKLGKVGETVKVAPGYF 64 (90)
Q Consensus 37 ~km~VILl~dV~gLGk~GdvV~Vk~GYA 64 (90)
+.|.|+|..|.-+.-+.||.|.|.-=|-
T Consensus 198 rsi~V~l~~dLvd~~~PGDrV~vtGI~~ 225 (279)
T 1ltl_A 198 RQITVVLEDDLVDTLTPGDIVRVTGTLR 225 (279)
T ss_dssp CEEEEEEEGGGTTCCCTTCEEEEEEEEE
T ss_pred eEEEEEEcccccCccCCCCEEEEEEEEE
Confidence 6799999999999999999999876553
No 10
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=38.17 E-value=24 Score=22.55 Aligned_cols=30 Identities=7% Similarity=-0.018 Sum_probs=22.8
Q ss_pred eeeEEEEec--cccccCCCCcEEEecCcceecc
Q 043613 37 RRLEVILTT--KVDKLGKVGETVKVAPGYFHNH 67 (90)
Q Consensus 37 ~km~VILl~--dV~gLGk~GdvV~Vk~GYARN~ 67 (90)
.++++.+=. +.+. =..||+|.++.||.+.|
T Consensus 46 G~I~~t~W~~~~~~~-~~~G~~V~i~n~~v~~~ 77 (109)
T 2kbn_A 46 GIIKFTIWKNAELPL-LEQGESYLLRSVVVGEY 77 (109)
T ss_dssp CCEEEEEEGGGCCCC-CCTTCEEEEEEEEEEEE
T ss_pred CeEEEEEECcccccc-cCCCCEEEEEEEEEEEE
Confidence 457777766 3343 48999999999999876
No 11
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=35.91 E-value=14 Score=21.23 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=14.9
Q ss_pred HHHHHHhh-cccceechheee
Q 043613 11 LRQITKES-SDRVLHHPLLFS 30 (90)
Q Consensus 11 ~~~~~~~~-s~~~~~~p~~~~ 30 (90)
++++.+++ ..|++.||+.+.
T Consensus 4 ~~~l~~~~~~~Ni~~SP~Si~ 24 (55)
T 1m93_A 4 FREIASSMKGENVFISPPSIS 24 (55)
T ss_dssp HHHHHHHTTTSCEEECHHHHH
T ss_pred HHHHHhcCCCCCEEECHHHHH
Confidence 56666654 579999999874
No 12
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=35.58 E-value=31 Score=22.05 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=22.8
Q ss_pred eeEEEEeccccccCCCCcEEEecCcceecc
Q 043613 38 RLEVILTTKVDKLGKVGETVKVAPGYFHNH 67 (90)
Q Consensus 38 km~VILl~dV~gLGk~GdvV~Vk~GYARN~ 67 (90)
.+++.|=.+....=..||+|.|+.|+.+.|
T Consensus 50 ~I~~tlW~~~~~~~~~G~vv~i~~g~v~~~ 79 (119)
T 1o7i_A 50 RVKLTLWGKHAGSIKEGQVVKIENAWTTAF 79 (119)
T ss_dssp EEEEEEEGGGTTCCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEECChhhcCCCCCEEEEEeEEEEEe
Confidence 466666666554457899999999999876
No 13
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=34.92 E-value=28 Score=22.22 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=20.8
Q ss_pred eeEEEEeccccccCCCCcEEEecCcceecc
Q 043613 38 RLEVILTTKVDKLGKVGETVKVAPGYFHNH 67 (90)
Q Consensus 38 km~VILl~dV~gLGk~GdvV~Vk~GYARN~ 67 (90)
.+++.|=.+. =..||+|.++.||++.|
T Consensus 50 ~I~~tlW~~~---l~~Gdvv~i~ng~v~~~ 76 (106)
T 2k75_A 50 RIRISSFGKQ---LQDSDVVRIDNARVAQF 76 (106)
T ss_dssp EEEEEEESSC---CCTTEEEEEEEEEEEEE
T ss_pred eEEEEEEcCc---cCCCCEEEEEeeEEeEE
Confidence 4555555554 58999999999999876
No 14
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=29.68 E-value=23 Score=22.99 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=23.0
Q ss_pred eeeEEEEe--ccccccCCCCcEEEecCcceeccccc
Q 043613 37 RRLEVILT--TKVDKLGKVGETVKVAPGYFHNHLMP 70 (90)
Q Consensus 37 ~km~VILl--~dV~gLGk~GdvV~Vk~GYARN~LiP 70 (90)
+.+.+-|+ .|-+.=-..||.|-|.-|||.+.+=+
T Consensus 26 r~V~l~Lv~~~~~~~~~~vGD~VLVH~GfAi~~ide 61 (90)
T 2ot2_A 26 RDVDLTLVGSCDENGQPRVGQWVLVHVGFAMSVINE 61 (90)
T ss_dssp EEEECTTTCSBCTTSCBCTTCEEEEETTEEEEEECH
T ss_pred EEEEEeeeeccCCCCCCCCCCEEEEecChhhhhCCH
Confidence 45666666 22222136799999999999986543
No 15
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=27.06 E-value=58 Score=20.20 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=23.5
Q ss_pred eeeEEEEecccccc-CCCCcEEEecCcceecc
Q 043613 37 RRLEVILTTKVDKL-GKVGETVKVAPGYFHNH 67 (90)
Q Consensus 37 ~km~VILl~dV~gL-Gk~GdvV~Vk~GYARN~ 67 (90)
..+++.|-.|...+ =+.||+|.+ .||++-+
T Consensus 49 G~I~~tlW~~~~~~~i~~Gdvv~i-~g~v~~~ 79 (97)
T 3e0e_A 49 GSIRGTLWNELADFEVKKGDIAEV-SGYVKQG 79 (97)
T ss_dssp EEEEEEEEGGGGGCCCCTTCEEEE-EEEEEEC
T ss_pred CcEEEEEECCccccccCCCCEEEE-EEEEEEc
Confidence 45788888877664 689999999 8998654
No 16
>4afx_A Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_A 3h5c_A* 3f1s_A*
Probab=25.59 E-value=26 Score=26.98 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHhhcccceechhee
Q 043613 4 TQHGRNALRQITKESSDRVLHHPLLF 29 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~s~~~~~~p~~~ 29 (90)
++-|-+-++++.+.+.+|+++||+.+
T Consensus 59 ~~Fa~~L~~~l~~~~~~Niv~SP~SI 84 (387)
T 4afx_A 59 SNFGFSLLRKISMRHDGNMVFSPFGM 84 (387)
T ss_dssp HHHHHHHHHHHHHHCCSCEEECHHHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEChHHH
Confidence 34566778899888767999999987
No 17
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=22.17 E-value=31 Score=23.08 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=21.9
Q ss_pred eeeEEEEeccccccCCCCcEEEecCcceeccccc
Q 043613 37 RRLEVILTTKVDKLGKVGETVKVAPGYFHNHLMP 70 (90)
Q Consensus 37 ~km~VILl~dV~gLGk~GdvV~Vk~GYARN~LiP 70 (90)
+.+.+-|+.| . =..||.|-|.-|||.+.+=+
T Consensus 49 reV~l~Lv~e--~-~~vGDyVLVHvGfAi~kIDe 79 (103)
T 3d3r_A 49 RDVSSHLMTE--P-LAIGDYVLIHIGFVMNKIDR 79 (103)
T ss_dssp EEEECTTBSS--C-CCTTCEEEEEEEEEEEEECH
T ss_pred EEEEEEeecC--C-CCCCCEEEEeechhhhhCCH
Confidence 4466666652 1 25799999999999986544
No 18
>4ajt_A Protein Z-dependent protease inhibitor; blood clotting, ZPI; 2.50A {Mus musculus}
Probab=21.99 E-value=34 Score=26.84 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=20.8
Q ss_pred hhhhHHHHHHHHHhhcccceechhee
Q 043613 4 TQHGRNALRQITKESSDRVLHHPLLF 29 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~s~~~~~~p~~~ 29 (90)
+.-|-+-++++.+++..|+++||+.+
T Consensus 63 ~~Fa~~L~~~l~~~~~~Niv~SP~SI 88 (427)
T 4ajt_A 63 SSFGFNLLRKISMRHDGNVIFSPFGL 88 (427)
T ss_dssp HHHHHHHHHHHHHHCCSCEEECHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEchHHH
Confidence 34566778899887777999999987
No 19
>4dy0_A GLIA-derived nexin; serpin, protease inhibitor, thrombin, cell surface, hydrolas inhibitor; HET: IDS SGN; 2.35A {Homo sapiens} PDB: 4dy7_C
Probab=21.84 E-value=37 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHhh-cccceechhee
Q 043613 5 QHGRNALRQITKES-SDRVLHHPLLF 29 (90)
Q Consensus 5 ~~~~~~~~~~~~~~-s~~~~~~p~~~ 29 (90)
.-|-+-++++.+++ ..|+++||+.+
T Consensus 14 ~f~~~L~~~l~~~~~~~Niv~SP~Si 39 (379)
T 4dy0_A 14 NTGIQVFNQIVKSRPHDNIVISPHGI 39 (379)
T ss_dssp HHHHHHHHHHHHHCTTSCEEECHHHH
T ss_pred HHHHHHHHHHHhhCcCCcEEECHHHH
Confidence 45777889998876 56999999977
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=21.80 E-value=40 Score=23.29 Aligned_cols=31 Identities=16% Similarity=0.027 Sum_probs=23.9
Q ss_pred eeeEEEEeccccccCCCCcEEEecCcceecc
Q 043613 37 RRLEVILTTKVDKLGKVGETVKVAPGYFHNH 67 (90)
Q Consensus 37 ~km~VILl~dV~gLGk~GdvV~Vk~GYARN~ 67 (90)
..+.+.|-.|-..+=+.||+|.+..+|.+-|
T Consensus 73 G~I~ftlW~e~~~~l~~Gd~v~i~na~v~~~ 103 (145)
T 1wjj_A 73 GCILFTARNDQVDLMKPGATVILRNSRIDMF 103 (145)
T ss_dssp CEEEEEECTTHHHHTCTTCEEEEEEEEEEEE
T ss_pred cEEEEEEecCCcCcCCCCCEEEEeccEEEeE
Confidence 4577777777545567999999999999754
No 21
>3f1s_A Protein Z-dependent protease inhibitor; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} PDB: 3h5c_A*
Probab=21.22 E-value=36 Score=25.81 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHhhcccceechhee
Q 043613 4 TQHGRNALRQITKESSDRVLHHPLLF 29 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~s~~~~~~p~~~ 29 (90)
++-+.+-++++.+++.+|+++||+.+
T Consensus 21 ~~Fa~~l~~~l~~~~~~Niv~SP~Si 46 (385)
T 3f1s_A 21 SNFGFSLLRKISMRHDGNMVFSPFGM 46 (385)
T ss_dssp HHHHHHHHHHHHHHCCSCEEECHHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEchHHH
Confidence 34456677888887666999999987
Done!