BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043617
         (291 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FY2|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provide Insight Into Regulation Of Acetylcholine
           Synthesis
 pdb|2FY3|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provides Insight Into Regulation Of Acetylcholine
           Synthesis
 pdb|2FY4|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provide Insight Into Regulation Of Acetylcholine
           Synthesis
 pdb|2FY5|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provide Insight Into Regulation Of Acetylcholine
           Synthesis
          Length = 612

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 123 NFLNQPPEEKPAGSFELPEFPDIDPSMEFNSCMVSTNLESRVQLPEENVNNGLVR-SLSF 181
           N L  P    PA  F    FP  D  + F + ++S  L  +  L   ++     +  LS 
Sbjct: 88  NRLALPVNSSPAVIFARQHFPGTDDQLRFAASLISGVLSYKALLDSHSIPTDCAKGQLSG 147

Query: 182 SDLSSAETQTHFRDNDQSYYSMFDSVQKHGHHVQDGIQSNQVLPPLPSEEIL 233
             L   +           YY +F S +  GH     +  N  + P P   I+
Sbjct: 148 QPLCMKQ-----------YYGLFSSYRLPGHTQDTLVAQNSSIMPEPEHVIV 188


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,334,382
Number of Sequences: 62578
Number of extensions: 304995
Number of successful extensions: 878
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 11
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)