BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043617
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVC5|DOF35_ARATH Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5
PE=3 SV=1
Length = 247
Score = 171 bits (432), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 152/293 (51%), Gaps = 69/293 (23%)
Query: 4 VW--NHKPNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVG 61
+W N N EI+P+CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVG
Sbjct: 12 IWRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVG 71
Query: 62 GGCRKNRRGKSVRLSTDGVSSKALSYMGEINKVNGFLESTSTSSLMQQQDGSHIDIALVF 121
GGCRK+RR K S+ G ++K S + +S ID+ALV+
Sbjct: 72 GGCRKSRRPK----SSSGNNTKT---------------SLTANSGNPGGGSPSIDLALVY 112
Query: 122 ANFLNQPPEEKPAGSFELPEFPDIDPSMEFNSCMVSTNLESRVQLPEENVNNGLVRSLSF 181
ANFLN P+E S+ +C ++T + V P
Sbjct: 113 ANFLNPKPDE----------------SILQENCDLATT-DFLVDNPTG------------ 143
Query: 182 SDLSSAETQTHFRDNDQSYYSMFDSVQKHGHHVQDGIQSNQVLPPLPSEEILWLNSQMMM 241
+S + ND + + V+ H+ + N LPP P EE+L L++ +
Sbjct: 144 ---TSMDPSWSMDINDGHHDHYINPVE----HIVEECGYNG-LPPFPGEELLSLDTNGVW 195
Query: 242 NQSL---------QAAAAAATHEPMLGPADDHQAQDPNNLLFGNWSPFDFSSD 285
+ +L A HEP++ AD ++ D NLLFG+WSPFDF++D
Sbjct: 196 SDALLIGHNHVDVGVTPVQAVHEPVVHFAD--ESNDSTNLLFGSWSPFDFTAD 246
>sp|P68349|DOF12_ARATH Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2
PE=2 SV=1
Length = 260
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 74/112 (66%), Gaps = 11/112 (9%)
Query: 14 SPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKSV 73
+P CPRC SSNTKFCYYNNYSL+QPRYFCKGCRRYWTKGGSLRN+PVGGGCRK R +
Sbjct: 37 APACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRSRQN 96
Query: 74 RLSTDGVSSKALSYMGEINKVNGFLESTSTSSLMQQQDGSHIDIALVFANFL 125
G + G IN+ +GF S GS ID+A VFA ++
Sbjct: 97 SHKRFGRNENRPD--GLINQDDGFQSSPP---------GSDIDLAAVFAQYV 137
>sp|Q84TE9|DOF53_ARATH Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3
PE=2 SV=1
Length = 257
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 77/118 (65%), Gaps = 9/118 (7%)
Query: 12 EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGK 71
E++ CPRC S+NTKFCYYNNYSLTQPRYFCK CRRYWTKGG+LRN+PVGGGCRKN+R
Sbjct: 52 ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 111
Query: 72 SVRLSTDGVSSKALSYMGEINKVNGFLESTSTSSLMQQQDGSHIDIALVFANFLNQPP 129
S + + + S+ G++ GF + + HID++L FA Q P
Sbjct: 112 SSAARSLRTTPEPASHDGKVFSAAGFNGYS---------NNEHIDLSLAFALLNKQHP 160
>sp|Q8LAP8|DOF46_ARATH Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6
PE=2 SV=2
Length = 342
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 56/62 (90%)
Query: 8 KPNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKN 67
+P + + NCPRC S+NTKFCYYNNYSLTQPRYFCKGCRRYWT+GGSLRN+PVGGG RKN
Sbjct: 46 RPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKN 105
Query: 68 RR 69
+R
Sbjct: 106 KR 107
>sp|Q43385|DOF37_ARATH Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7
PE=1 SV=2
Length = 296
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 48/54 (88%), Positives = 51/54 (94%)
Query: 16 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 69
NCPRC S+NTKFCYYNNYSLTQPRYFCKGCRRYWT+GGSLRNVPVGG RKN+R
Sbjct: 75 NCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKR 128
>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6
PE=1 SV=2
Length = 323
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 58/69 (84%)
Query: 9 PNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
P E + NCPRC S+NTKFCY+NNYSLTQPR+FCK CRRYWT+GGSLRNVPVGGG R+N+
Sbjct: 70 PLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNK 129
Query: 69 RGKSVRLST 77
R KS ST
Sbjct: 130 RSKSRSKST 138
>sp|Q8L9V6|DOF11_ARATH Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana GN=DOF1.1
PE=1 SV=2
Length = 331
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 56/60 (93%), Gaps = 1/60 (1%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRK-NRRGKSVRL 75
CPRC SSNTKFCYYNNY+LTQPR+FCKGCRRYWT+GG+LRNVPVGGGCR+ N++GK+ L
Sbjct: 79 CPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKNGNL 138
>sp|Q8LE43|DOF21_ARATH Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1
PE=2 SV=2
Length = 288
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 16 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKS 72
NCPRC S NTKFCYYNNYSL+QPRYFCK CRRYWTKGG+LRNVPVGGGCR+N+R S
Sbjct: 49 NCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105
>sp|O80928|DOF24_ARATH Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4
PE=2 SV=1
Length = 330
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 54/60 (90%)
Query: 12 EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGK 71
E + CPRC S+NTKFCY+NNYSLTQPR+FCK CRRYWT+GG+LRNVPVGGGCR+NRR K
Sbjct: 86 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTK 145
>sp|O24463|PBF_MAIZE Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1
Length = 328
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 60/80 (75%)
Query: 8 KPNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKN 67
+P + + CPRC S+NTKFCYYNNYS++QPRYFCK CRRYWT GG+LRNVP+GGGCRKN
Sbjct: 53 RPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGGCRKN 112
Query: 68 RRGKSVRLSTDGVSSKALSY 87
+ L + SS + +Y
Sbjct: 113 KHASRFVLGSHTSSSSSATY 132
>sp|Q9LZ56|DOF51_ARATH Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1
PE=2 SV=1
Length = 399
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 9 PNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
P E + CPRC S+NTKFCY+NNYSLTQPR+FCK CRRYWT+GG+LR+VPVGGGCR+N+
Sbjct: 89 PLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNK 148
Query: 69 R 69
R
Sbjct: 149 R 149
>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4
PE=2 SV=2
Length = 307
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 62/85 (72%), Gaps = 3/85 (3%)
Query: 2 ERVWNHKPNV---EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNV 58
R+ H+ N+ S CPRC S NTKFCYYNNY+L+QPR+FCK CRRYWTKGG LRNV
Sbjct: 35 RRMRAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNV 94
Query: 59 PVGGGCRKNRRGKSVRLSTDGVSSK 83
PVGGGCRK +R K+ ++ + + K
Sbjct: 95 PVGGGCRKAKRSKTKQVPSSSSADK 119
>sp|Q9M161|DOF41_ARATH Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1
PE=2 SV=2
Length = 294
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/54 (85%), Positives = 49/54 (90%)
Query: 16 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 69
NCPRC SSNTKFCYYNNYSL QPRY CK CRRYWT+GGSLRNVPVGGG RKN++
Sbjct: 69 NCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 122
>sp|Q9ZPY0|DOF25_ARATH Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5
PE=2 SV=3
Length = 369
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/47 (93%), Positives = 46/47 (97%)
Query: 16 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 62
NCPRC S+NTKFCYYNNYSLTQPRYFCKGCRRYWT+GGSLRNVPVGG
Sbjct: 81 NCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGG 127
>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7
PE=2 SV=1
Length = 316
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 49/53 (92%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 69
CPRC S NTKFCYYNNYSL+QPR+FCK CRRYWT+GG+LRNVP+GGGCRK ++
Sbjct: 43 CPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKK 95
>sp|Q9ZV33|DOF22_ARATH Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana GN=DOF2.2
PE=2 SV=2
Length = 340
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 41/50 (82%), Positives = 48/50 (96%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRK 66
CPRC S+NTKFCY+NNY+LTQPR+FCK CRRYWT+GG+LRNVPVGGGCR+
Sbjct: 96 CPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRR 145
>sp|Q9M1E6|DOF32_ARATH Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2
PE=2 SV=1
Length = 245
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 57/79 (72%)
Query: 12 EISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGK 71
E S CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGG LRN+P+GG RK++R
Sbjct: 37 EQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSS 96
Query: 72 SVRLSTDGVSSKALSYMGE 90
S S +++ G+
Sbjct: 97 SATKSLRTTPEPTMTHDGK 115
>sp|Q9FZA4|DOF14_ARATH Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4
PE=2 SV=1
Length = 311
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 50/55 (90%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGK 71
CPRC SSNTKFCYYNNYSL+QPR+FCK C+RYWT+GG+LRNVPVGG RKN+R K
Sbjct: 29 CPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 83
>sp|Q9FM03|DOF56_ARATH Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6
PE=2 SV=2
Length = 372
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 42/49 (85%), Positives = 47/49 (95%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCR 65
CPRC S++TKFCYYNNYSL+QPRYFCK CRRYWTKGG+LRN+PVGGGCR
Sbjct: 75 CPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCR 123
>sp|Q84JQ8|DOF18_ARATH Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8
PE=2 SV=1
Length = 352
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 48/57 (84%)
Query: 8 KPNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGC 64
+P + + NCPRC S NTKFCYYNNYSLTQPRYFCK CRRYWT GGSLRN+PVGGG
Sbjct: 42 RPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGV 98
>sp|Q9SUA9|DOF44_ARATH Dof zinc finger protein DOF4.4 OS=Arabidopsis thaliana GN=DOF4.4
PE=3 SV=1
Length = 210
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 47/55 (85%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGK 71
CPRC S NTKFC+YNNYS +QPRYFCK CRRYWT GG+LRN+PVGG CRK +R K
Sbjct: 26 CPRCDSDNTKFCFYNNYSESQPRYFCKNCRRYWTHGGALRNIPVGGSCRKPKRLK 80
>sp|O82155|DOF17_ARATH Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7
PE=2 SV=1
Length = 194
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 50/57 (87%), Gaps = 1/57 (1%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRK-NRRGKS 72
CPRC S NTKFCYYNNY+L+QPR+FCK CRRYWTKGG+LRN+PVGGG RK N+R S
Sbjct: 35 CPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKSNKRSGS 91
>sp|Q94AR6|DOF31_ARATH Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana GN=DOF3.1
PE=2 SV=2
Length = 204
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 47/51 (92%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKN 67
CPRC S NTKFCYYNNY+L+QPR+FCK CRRYWTKGG+LRNVPVGGG RKN
Sbjct: 31 CPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKN 81
>sp|P38564|MNB1A_MAIZE Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A PE=1 SV=2
Length = 238
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 46/51 (90%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKN 67
CPRC S +TKFCYYNNY+ +QPR+FCKGCRRYWTKGG+LRNVPVGGG RK
Sbjct: 49 CPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKK 99
>sp|Q39088|DOF34_ARATH Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana GN=DOF3.4
PE=1 SV=2
Length = 253
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 47/53 (88%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 69
CPRC SSNTKFCYYNNY+ +QPR+FCK CRRYWT GG+LR+VPVGGG RK+ +
Sbjct: 32 CPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGGTRKSAK 84
>sp|Q84K52|DOF47_ARATH Dof zinc finger protein DOF4.7 OS=Arabidopsis thaliana GN=DOF4.7
PE=2 SV=1
Length = 246
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Query: 2 ERVWNHKPNVEISP--NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVP 59
++ N +P+ P CPRC S NTKFCYYNNYSL+QPR++CK CRRYWT+GG+LRNVP
Sbjct: 26 RQINNKEPSPATQPVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGALRNVP 85
Query: 60 VGGGCRKNRRGKSVRLSTDGVSSKALSYMGEINKVNGFLESTSTSSLMQQQDG 112
+GG R + S+++ +SS L G + + + ++++M G
Sbjct: 86 IGGSTRNKNKPCSLQV----ISSPPLFSNGTSSASRELVRNHPSTAMMMMSSG 134
>sp|Q9SEZ3|CDF5_ARATH Cyclic dof factor 5 OS=Arabidopsis thaliana GN=CDF5 PE=2 SV=1
Length = 399
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 46/52 (88%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
CPRC S+NTKFCYYNNY++ QPRYFC+ C+RYWT GGS+RNVPVG G RKN+
Sbjct: 134 CPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNK 185
>sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2
Length = 448
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKS 72
CPRC S TKFCYYNNY++ QPR+FCK C+RYWT GG++RNVPVG G RKN+ S
Sbjct: 112 CPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSS 167
>sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2
Length = 457
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
CPRC S TKFCYYNNY++ QPR+FCK C+RYWT GG++RNVPVG G RKN+
Sbjct: 140 CPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNK 191
>sp|Q9LQX4|DOF13_ARATH Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3
PE=2 SV=1
Length = 366
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
CPRC S++TKFCYYNNY++ QPR+FC+ C+RYWT GGS+R VPVG G RKN+
Sbjct: 107 CPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNK 158
>sp|Q9FGD6|DOF58_ARATH Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana GN=DOF5.8
PE=2 SV=1
Length = 225
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 47/54 (87%)
Query: 16 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 69
+CPRC S+NTKFCYYNNY+ +QPR+FCK CRRYWT GG+LR++PVGG RK+ +
Sbjct: 33 SCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSK 86
>sp|Q9SX97|DOF16_ARATH Dof zinc finger protein DOF1.6 OS=Arabidopsis thaliana GN=DOF1.6
PE=2 SV=1
Length = 209
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 46/55 (83%)
Query: 9 PNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGG 63
PN+ CPRC S+ TKFCYYNNY+L QPRY+CK CRRYWT+GG+LR+VPVGGG
Sbjct: 23 PNLAEPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCRRYWTQGGTLRDVPVGGG 77
>sp|Q9SUB0|DOF43_ARATH Dof zinc finger protein DOF4.3 OS=Arabidopsis thaliana GN=DOF4.3
PE=3 SV=1
Length = 232
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 41/52 (78%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
C RC S NTKFCYYNNYS QPRYFCK CRRYWT GG+LRNVP+GG R R
Sbjct: 27 CARCDSDNTKFCYYNNYSEFQPRYFCKNCRRYWTHGGALRNVPIGGSSRAKR 78
>sp|Q8W1E3|CDF1_ARATH Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2
Length = 298
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
CPRC S TKFCYYNNY++ QPR+FCK C+RYWT GG++R+VP+G G RKN+
Sbjct: 56 CPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNK 107
>sp|O22967|CDF4_ARATH Cyclic dof factor 4 OS=Arabidopsis thaliana GN=CDF4 PE=2 SV=1
Length = 170
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
CPRC S TKFCY+NNY++ QPR+FCKGC RYWT GG+LRNVPVG G RK++
Sbjct: 60 CPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSK 111
>sp|P68350|DOF15_ARATH Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5
PE=1 SV=1
Length = 175
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
CPRC S TKFCY+NNY++ QPR+FCKGC+RYWT GG+LRNVPVG G RK++
Sbjct: 64 CPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 115
>sp|O49550|DOF45_ARATH Dof zinc finger protein DOF4.5 OS=Arabidopsis thaliana GN=DOF4.5
PE=3 SV=1
Length = 249
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 40/52 (76%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNR 68
C RC S NTKFCYYNNY QPRYFCK CRRYWT GG+LRN+P+GG R R
Sbjct: 27 CARCDSDNTKFCYYNNYCEFQPRYFCKNCRRYWTHGGALRNIPIGGSSRAKR 78
>sp|Q9SUB1|DOF42_ARATH Dof zinc finger protein DOF4.2 OS=Arabidopsis thaliana GN=DOF4.2
PE=3 SV=1
Length = 194
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 34/50 (68%)
Query: 17 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRK 66
CPRC S T+F Y+NN +QPRY CK C R WT GG LRN+PV G C K
Sbjct: 23 CPRCYSDQTRFSYFNNNKKSQPRYKCKNCCRCWTHGGVLRNIPVTGICDK 72
>sp|B9K846|EFP_THENN Elongation factor P OS=Thermotoga neapolitana (strain ATCC 49049 /
DSM 4359 / NS-E) GN=efp PE=3 SV=1
Length = 185
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 152 NSCMVSTNLESRVQLPEENVNNGLVRSLSF--------SDLSSAETQTHFRDNDQSYYSM 203
S +V T L+ NV GLVR ++F ++LS + Q +RD D Y+
Sbjct: 33 GSGLVRTKLK--------NVKTGLVREVNFPSGEKVPEAELSFRKAQYLYRDGDHYYFMT 84
Query: 204 FDSVQKH 210
D ++H
Sbjct: 85 LDDYEQH 91
>sp|Q2RK59|SYI_MOOTA Isoleucine--tRNA ligase OS=Moorella thermoacetica (strain ATCC
39073) GN=ileS PE=3 SV=1
Length = 930
Score = 33.5 bits (75), Expect = 2.1, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 125 LNQPPEEKPAGSFELPEFPDI 145
L+QP EE PAGS E PE P +
Sbjct: 864 LHQPGEEAPAGSLEAPELPGL 884
>sp|C3LRB8|CYSH_VIBCM Phosphoadenosine phosphosulfate reductase OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=cysH PE=3 SV=1
Length = 253
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 161 ESRVQLPEENVNNGLVRSLSFSDLSSAETQTHFRDNDQSYYSMFD 205
+SR LP +V NG+ + L D ++ E + +DND Y+ +++
Sbjct: 165 QSRASLPILSVQNGVFKFLPVIDWTNKEVHYYLKDNDLPYHPLWE 209
>sp|Q9KUX2|CYSH_VIBCH Phosphoadenosine phosphosulfate reductase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=cysH PE=3 SV=1
Length = 253
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 161 ESRVQLPEENVNNGLVRSLSFSDLSSAETQTHFRDNDQSYYSMFD 205
+SR LP +V NG+ + L D ++ E + +DND Y+ +++
Sbjct: 165 QSRASLPILSVQNGVFKFLPVIDWTNKEVHYYLKDNDLPYHPLWE 209
>sp|A5F3I6|CYSH_VIBC3 Phosphoadenosine phosphosulfate reductase OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=cysH PE=3 SV=1
Length = 253
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 161 ESRVQLPEENVNNGLVRSLSFSDLSSAETQTHFRDNDQSYYSMFD 205
+SR LP +V NG+ + L D ++ E + +DND Y+ +++
Sbjct: 165 QSRASLPILSVQNGVFKFLPVIDWTNKEVHYYLKDNDLPYHPLWE 209
>sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit OS=Homo sapiens
GN=PRKDC PE=1 SV=3
Length = 4128
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 183 DLSSAETQTHFRDNDQSYYSMFDSVQKHGHHVQDGIQSNQVLPPLPSEEILWLNSQMMMN 242
+L A + H+ Y + D V + +++Q+GIQS + S ++L S++
Sbjct: 3072 ELQKAILELHYSQELSLLYLLQDDVDRAKYYIQNGIQS--FMQNYSSIDVLLHQSRLTKL 3129
Query: 243 QSLQAAAAAATHEPMLGPADDHQAQDPNNLLFGNWS 278
QS+QA + + +Q P L W+
Sbjct: 3130 QSVQALTEIQEFISFISKQGNLSSQVPLKRLLNTWT 3165
>sp|Q04975|VIPC_SALTI Vi polysaccharide biosynthesis protein VipC/TviE OS=Salmonella
typhi GN=vipC PE=4 SV=2
Length = 578
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 77 TDGVSSKALSYMGEINKVNGFLESTSTSSLMQQQDGSHIDIALVFANFLNQPPEEKPAGS 136
++GV K +Y+G+INK+ LE ++ + I + + N+ P + P GS
Sbjct: 101 SNGVQKKYNNYLGKINKICDLLERLEGKAIPVGTNTCIIAMKHAILFYRNRQPRQLPVGS 160
Query: 137 F 137
F
Sbjct: 161 F 161
>sp|Q42883|ECAP_SOLLC Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum
lycopersicum GN=LCA1 PE=2 SV=1
Length = 1048
Score = 32.0 bits (71), Expect = 5.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 58 VPVGGGCRKNRRGKSVRLSTDGVSSKALSYMGEINKVNGFLEST--STSSLMQQQDGSHI 115
VP+ CR+ K + +S+ G+ L+Y ++ +++G+ +T + L+ S I
Sbjct: 551 VPLDESCRQLLLLKQLEMSSKGLRCLGLAYKDDLGELSGYYAATHPAHKKLLDPSCYSSI 610
Query: 116 DIALVFANF--LNQPPEEK 132
+ LVF L PP E+
Sbjct: 611 ESDLVFVGVVGLRDPPREE 629
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana
GN=UBP16 PE=2 SV=1
Length = 1008
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 147 PSMEFNSCMVSTNLESRVQLPEENVNNGLVRSLSFS--DLSSAETQTHFRDNDQSYYSMF 204
P + + ++N +SRV LP+ N + + RS+S S +LSS N QS+YS F
Sbjct: 852 PRLAVCTKTEASNKKSRVPLPKANEKSTISRSVSTSSPELSSNTPGGGRSGNIQSFYSSF 911
Query: 205 DSVQK 209
+QK
Sbjct: 912 QRLQK 916
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,744,824
Number of Sequences: 539616
Number of extensions: 4358220
Number of successful extensions: 10981
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10927
Number of HSP's gapped (non-prelim): 63
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)