BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043618
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AN4|A Chain A, Structure And Function Of The BHLHZ DOMAIN OF USF
 pdb|1AN4|B Chain B, Structure And Function Of The BHLHZ DOMAIN OF USF
          Length = 65

 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 103 ESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGG----AINYVKELEQ 157
           E +R  H  VER RR ++ N++  L  ++P S ++        GG    A +Y++EL Q
Sbjct: 3   EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61


>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
 pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
          Length = 87

 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLE 163
           +R  H  +ER RR  +K+    LR  +P    ++  +A I+  A  Y++ + + V TL+
Sbjct: 4   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQ 62


>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
 pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
          Length = 80

 Score = 31.2 bits (69), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 101 EVES---QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVK 153
           EVES   +R  H  +ER RR  +K+    LR  +P    ++  +A I+  A  Y++
Sbjct: 5   EVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQ 60


>pdb|1K3V|A Chain A, Porcine Parvovirus Capsid
          Length = 579

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 116 RRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHILQQSD 175
           +  Q + YLS +R+L PP+Y  +  Q   +  +I      + +  T+E    IH+L+  D
Sbjct: 204 KPTQYRYYLSCIRNLNPPTYTGQSQQ---ITDSIQTGLHSDIMFYTIENAVPIHLLRTGD 260

Query: 176 D 176
           +
Sbjct: 261 E 261


>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
 pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
          Length = 83

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVK 153
           +R  H  +ER RR  +K+    LR  +P    ++  +A I+  A  Y++
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQ 50


>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
           BHLHZ DOMAIN
          Length = 86

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVK 153
           +R  H  +ER RR  +K+    LR  +P    ++  +A I+  A  Y++
Sbjct: 3   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQ 51


>pdb|4ATI|A Chain A, Mitf:m-Box Complex
 pdb|4ATI|B Chain B, Mitf:m-Box Complex
 pdb|4ATK|A Chain A, Mitf:e-Box Complex
 pdb|4ATK|B Chain B, Mitf:e-Box Complex
          Length = 118

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 108 THIFVERNRRKQMKNYLSVLRSLMPPSY--VQRGDQASIVGGAINYVKELEQ 157
            H  +ER RR  + + +  L +L+P S     R ++ +I+  +++Y+++L++
Sbjct: 30  NHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQR 81


>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
 pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
          Length = 76

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVK 153
           +R  H  +ER RR  +K+    LR  +P    ++  +A I+  A  Y++
Sbjct: 1   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQ 49


>pdb|3PER|A Chain A, Crystal Structure Of Boxb With Phosphate Bound To The
           Diiron Center
 pdb|3PER|B Chain B, Crystal Structure Of Boxb With Phosphate Bound To The
           Diiron Center
 pdb|3PF7|A Chain A, Crystal Structure Of Boxb With Malonate Bound To The
           Diiron Center
 pdb|3PF7|B Chain B, Crystal Structure Of Boxb With Malonate Bound To The
           Diiron Center
 pdb|3PM5|A Chain A, Crystal Structure Of Boxb In Mixed Valent State With Bound
           Benzoyl-Coa
 pdb|3PM5|B Chain B, Crystal Structure Of Boxb In Mixed Valent State With Bound
           Benzoyl-Coa
 pdb|3PM5|C Chain C, Crystal Structure Of Boxb In Mixed Valent State With Bound
           Benzoyl-Coa
 pdb|3PM5|D Chain D, Crystal Structure Of Boxb In Mixed Valent State With Bound
           Benzoyl-Coa
 pdb|3Q1G|A Chain A, Crystal Structure Of Boxb Crystallized With Peg
 pdb|3Q1G|B Chain B, Crystal Structure Of Boxb Crystallized With Peg
 pdb|3Q1G|C Chain C, Crystal Structure Of Boxb Crystallized With Peg
 pdb|3Q1G|D Chain D, Crystal Structure Of Boxb Crystallized With Peg
          Length = 481

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 276 FSVKVEEGCHLRSMNEVAAAVYDMMGRVQGEA 307
           F V VEEG HL +M  +  A +   GR +GEA
Sbjct: 144 FQVNVEEGRHLWAMVYLLHAHFGRDGREEGEA 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,882,902
Number of Sequences: 62578
Number of extensions: 278561
Number of successful extensions: 784
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 12
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)