BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043618
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7T4|BH096_ARATH Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2
SV=1
Length = 320
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 145/333 (43%), Positives = 192/333 (57%), Gaps = 38/333 (11%)
Query: 1 MALEAVVFQQDPFSY------GFKDL----GETSDPWSCGFGLEEGAAHSEILLQNGGLG 50
MALEAVV+ QDPFSY F DL E DP ++ G N G
Sbjct: 1 MALEAVVYPQDPFSYISCKDFPFYDLYFQEEEDQDPQDTKNNIKLGQGQGHGFASNNYNG 60
Query: 51 LMTQKMAKTNSS----------TCGGGGDGFFTGESRPLEPPLACHLRKRRRTR--SVKN 98
N + G D ES+P +A +R+R R S KN
Sbjct: 61 RTGDYSDDYNYNEEDLQWPRDLPYGSAVDT----ESQPPPSDVAAGGGRRKRRRTRSSKN 116
Query: 99 IEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQL 158
EE+E+QRMTHI VERNRRKQM YL+VLRSLMPP Y QRGDQASIVGGAINY+KELE
Sbjct: 117 KEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIVGGAINYLKELEHH 176
Query: 159 VQTLEVHKRIHILQQSDDHDHDD--AGFSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKK 216
+Q++E + HD + S+ FS+FF+FPQYS+ R +S+ A +
Sbjct: 177 LQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSN------RPTSAAAAEG 230
Query: 217 PSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTF 276
+A+IEVTM ES+A++KIL+ + P+QL K+V+ SL L +LHLNV T D+ VLY+
Sbjct: 231 ----MAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVLYSI 286
Query: 277 SVKVEEGCHLRSMNEVAAAVYDMMGRVQGEAAF 309
SVKVEEG L ++ ++AAAV ++ R++ E++F
Sbjct: 287 SVKVEEGSQLNTVEDIAAAVNQILRRIEEESSF 319
>sp|Q9SK91|BH094_ARATH Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2
SV=2
Length = 304
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/336 (43%), Positives = 189/336 (56%), Gaps = 61/336 (18%)
Query: 1 MALEAVVFQQDPFSYGFKDLGETSDPWSCGFGLEEGAAHSEILLQNGGLGLMTQKMAKTN 60
M LEAVV+ QDPF Y L D F + + E + Q+ + K+
Sbjct: 1 MPLEAVVYPQDPFGY----LSNCKD-----FMFHDLYSQEEFVAQDTKNNI--DKLGHEQ 49
Query: 61 SSTCGGGGDGF-----------------------FTGESRPLEPPLACHLRKRRRTRSVK 97
S G D ES P PP H RKRRRTR+ K
Sbjct: 50 SFVEQGKEDDHQWRDYHQYPLLIPSLGEELGLTAIDVESHP--PP--QHRRKRRRTRNCK 105
Query: 98 NIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQ 157
N EE+E+QRMTHI VERNRRKQM YL+VLRSLMP SY QRGDQASIVGGAINYVKELE
Sbjct: 106 NKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVKELEH 165
Query: 158 LVQTLEVHKRIHILQQSDDHDHDDAGFSTSI------FSNFFSFPQYSDFRPNDSRESSS 211
++Q++E KR HD G TS F++FFSFPQYS + + SS
Sbjct: 166 ILQSMEP-KRTRT--------HDPKGDKTSTSSLVGPFTDFFSFPQYST-KSSSDVPESS 215
Query: 212 TAPKKPSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQ 271
++P A+IEVT+AES+ANIKI++ + P+QL K++T SL L +LHLNV T N
Sbjct: 216 SSP-------AEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTLHNS 268
Query: 272 VLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQGEA 307
+LY+ SV+VEEG L +++++A A+ + R+Q E
Sbjct: 269 ILYSISVRVEEGSQLNTVDDIATALNQTIRRIQEET 304
>sp|Q9FKQ6|BH099_ARATH Transcription factor bHLH99 OS=Arabidopsis thaliana GN=BHLH99 PE=2
SV=1
Length = 296
Score = 174 bits (442), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 148/242 (61%), Gaps = 18/242 (7%)
Query: 72 FTGESRPLEPPLAC--HLRKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRS 129
T + PL C L ++RR RS K I + E+QRM HI VERNRRKQM ++LS+L+S
Sbjct: 65 LTEKLSPLRERYGCGDFLSRKRRRRSEKTIVDKENQRMNHIAVERNRRKQMNHFLSILKS 124
Query: 130 LMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHILQQSDDHDHDDAGFSTSIF 189
+MP SY Q DQASI+ G I+Y+K+LEQ +Q+LE + L QS + IF
Sbjct: 125 MMPLSYSQPNDQASIIEGTISYLKKLEQRLQSLEAQLKATKLNQSPN-----------IF 173
Query: 190 SNFFSFPQY----SDFRPNDSRESSSTAPKKPSGPVADIEVTMAESNANIKILSTRYPKQ 245
S+FF FPQY + S SSS K VAD+EVTM E +ANIK+L+ P+
Sbjct: 174 SDFFMFPQYSTATATATATASSSSSSHHHHKRLEVVADVEVTMVERHANIKVLTKTQPRL 233
Query: 246 LFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLR-SMNEVAAAVYDMMGRVQ 304
LFK++ F+SLGL LHLN+ T + L+TFSVKVE C L S NEVA V++++ RV
Sbjct: 234 LFKIINEFNSLGLSTLHLNLTTSKDMSLFTFSVKVEADCQLTPSGNEVANTVHEVVRRVH 293
Query: 305 GE 306
E
Sbjct: 294 KE 295
>sp|Q56YJ8|FAMA_ARATH Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1
Length = 414
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 119/196 (60%), Gaps = 4/196 (2%)
Query: 89 KRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGA 148
KR+R R+ K EEVESQRMTHI VERNRRKQM +L VLRSLMP SYVQRGDQASI+GGA
Sbjct: 179 KRKRARTSKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGA 238
Query: 149 INYVKELEQLVQTLEVHKRIHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRE 208
I +V+ELEQL+Q LE KR IL ++ S+S + + Q N +
Sbjct: 239 IEFVRELEQLLQCLESQKRRRILGETGRDMTTTTTSSSSPITTVANQAQPLIITGNVTEL 298
Query: 209 SSSTAPKKPSGP----VADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLN 264
++ + +AD+EV + +A IKILS R P QL K + L L +LH N
Sbjct: 299 EGGGGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLHLSILHTN 358
Query: 265 VATFDNQVLYTFSVKV 280
+ T + VLY+F+VK+
Sbjct: 359 ITTMEQTVLYSFNVKI 374
>sp|Q9M128|BH057_ARATH Transcription factor bHLH57 OS=Arabidopsis thaliana GN=BHLH57 PE=2
SV=1
Length = 315
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 136/213 (63%), Gaps = 8/213 (3%)
Query: 97 KNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELE 156
KN +EVE+QRMTHI VERNRR+QM +L+ LRSLMPPS++QRGDQASIVGGAI+++KELE
Sbjct: 105 KNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELE 164
Query: 157 QLVQTLEVHKRIHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKK 216
QL+Q+LE KR D + ++ S+ + S + + E+ TA +
Sbjct: 165 QLLQSLEAEKR-------KDGTDETPKTASCSSSSSLACTNSSISSVSTTSENGFTA-RF 216
Query: 217 PSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTF 276
G ++E T+ +++ ++K+ R +Q+ K + L L +LHL +++ + V+Y+F
Sbjct: 217 GGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSF 276
Query: 277 SVKVEEGCHLRSMNEVAAAVYDMMGRVQGEAAF 309
++K+E+GC L S +E+A AV+ + ++ GE +
Sbjct: 277 NLKMEDGCKLGSADEIATAVHQIFEQINGEVMW 309
>sp|O81037|BH070_ARATH Transcription factor bHLH70 OS=Arabidopsis thaliana GN=BHLH70 PE=2
SV=1
Length = 371
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 122/200 (61%), Gaps = 19/200 (9%)
Query: 98 NIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQ 157
NIEE+ESQRMTHI VERNRR+QM +L+ LRS++P SY+QRGDQASIVGGAI++VK LEQ
Sbjct: 184 NIEEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVGGAIDFVKILEQ 243
Query: 158 LVQTLEVHKRIHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKKP 217
+Q+LE KR QQSDD N P+ + R N S + K+
Sbjct: 244 QLQSLEAQKRS---QQSDD--------------NKEQIPEDNSLR-NISSNKLRASNKEE 285
Query: 218 SGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTF 276
IE T+ ES+ N+KI TR QL + + L VLHLN+ + N V Y+F
Sbjct: 286 QSSKLKIEATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITSPTNTSVSYSF 345
Query: 277 SVKVEEGCHLRSMNEVAAAV 296
++K+E+ C+L S +E+ AA+
Sbjct: 346 NLKMEDECNLGSADEITAAI 365
>sp|Q56XR0|BH071_ARATH Transcription factor bHLH71 OS=Arabidopsis thaliana GN=BHLH71 PE=1
SV=1
Length = 327
Score = 151 bits (382), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 137/234 (58%), Gaps = 33/234 (14%)
Query: 97 KNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELE 156
KN EE E+QRMTHI VERNRR+QM +LSVLRSLMP + +GDQASIVGGAI+++KELE
Sbjct: 78 KNEEEAENQRMTHIAVERNRRRQMNQHLSVLRSLMPQPFAHKGDQASIVGGAIDFIKELE 137
Query: 157 QLVQTLEVHKRIHI-LQQS------------DDHDHDDAGFSTSIFSNFFSFPQYSDFRP 203
+ +LE K + L QS ++ H + S S FF + P
Sbjct: 138 HKLLSLEAQKHHNAKLNQSVTSSTSQDSNGEQENPHQPSSLS---LSQFF----LHSYDP 190
Query: 204 NDSRESSSTAPKKPSGPVADIEVTMAESNANIKILSTR-----------YPKQLFKMVTG 252
+ + ST+ K P+ D+EVT+ E++ANI+ILS R P QL K+V
Sbjct: 191 SQENRNGSTSSVK--TPMEDLEVTLIETHANIRILSRRRGFRWSTLATTKPPQLSKLVAS 248
Query: 253 FHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQGE 306
SL L +LHL+V T DN +Y+ S KVEE C L S++++A AV+ M+ ++ E
Sbjct: 249 LQSLSLSILHLSVTTLDNYAIYSISAKVEESCQLSSVDDIAGAVHHMLSIIEEE 302
>sp|Q700E4|BH067_ARATH Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2
SV=1
Length = 358
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 123/205 (60%), Gaps = 26/205 (12%)
Query: 97 KNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELE 156
KN EE+E+QR+ HI VERNRR+QM +++ LR+L+PPSY+QRGDQASIVGGAINYVK LE
Sbjct: 168 KNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVLE 227
Query: 157 QLVQTLEVHKRIHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPND---SRESSSTA 213
Q++Q+LE KR QQS+ ++A S ND + E +
Sbjct: 228 QIIQSLESQKRTQ--QQSNSEVVENA------------LNHLSGISSNDLWTTLEDQTCI 273
Query: 214 PKKPSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT-FDNQV 272
PK IE T+ +++ ++K+ + QL K + L L VLHLN+ T + V
Sbjct: 274 PK--------IEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSV 325
Query: 273 LYTFSVKVEEGCHLRSMNEVAAAVY 297
Y+F++K+E+ C L S +E+ AAV+
Sbjct: 326 SYSFNLKMEDECDLESADEITAAVH 350
>sp|Q9M8K6|MUTE_ARATH Transcription factor MUTE OS=Arabidopsis thaliana GN=MUTE PE=2 SV=1
Length = 202
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 111/198 (56%), Gaps = 18/198 (9%)
Query: 107 MTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHK 166
M+HI VERNRR+QM +L LRSL P Y++RGDQASI+GG I ++KEL+QLVQ LE K
Sbjct: 1 MSHIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKK 60
Query: 167 RIHILQQ-SDDHDHDD-------AGFSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKKPS 218
R L + S +DH A + FS + S F+ + +S
Sbjct: 61 RRKTLNRPSFPYDHQTIEPSSLGAATTRVPFSRIENVMTTSTFKEVGACCNS-------- 112
Query: 219 GPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSV 278
P A++E ++ SN ++++S R QL K+++ L VLHLN+++ + VLY F V
Sbjct: 113 -PHANVEAKISGSNVVLRVVSRRIVGQLVKIISVLEKLSFQVLHLNISSMEETVLYFFVV 171
Query: 279 KVEEGCHLRSMNEVAAAV 296
K+ CHL S+ E+ V
Sbjct: 172 KIGLECHL-SLEELTLEV 188
>sp|Q700C7|SPCH_ARATH Transcription factor SPEECHLESS OS=Arabidopsis thaliana GN=SPCH
PE=1 SV=1
Length = 364
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 53/63 (84%)
Query: 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEV 164
Q+M+H+ VERNRRKQM +L+VLRSLMP YV+RGDQASI+GG + Y+ EL+Q++Q+LE
Sbjct: 100 QKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEA 159
Query: 165 HKR 167
K+
Sbjct: 160 KKQ 162
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 221 VADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKV 280
+AD+EV + +N +K +S + P Q+ K++ L L +L +N+ T D +L +F++K+
Sbjct: 285 LADVEVKFSGANVLLKTVSHKIPGQVMKIIAALEDLALEILQVNINTVDETMLNSFTIKI 344
Query: 281 EEGCHLRSMNEVAAAV 296
C L S E+A +
Sbjct: 345 GIECQL-SAEELAQQI 359
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1
SV=1
Length = 450
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRI 168
++ ER RRK++ + L +LRS++P + + D+ASI+G AI+Y+KEL Q + L H +
Sbjct: 268 NLMAERRRRKKLNDRLYMLRSVVP--KISKMDRASILGDAIDYLKELLQRINDL--HTEL 323
Query: 169 HILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKKPSGPVADIEVTM 228
+ S+S PQ +R + SS+ P P G +EV +
Sbjct: 324 -----------ESTPPSSSSLHPLTPTPQTLSYRVKEELCPSSSLP-SPKGQQPRVEVRL 371
Query: 229 AESNA-NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLR 287
E A NI + R P L + +LGL V ++ F+ L F + + H
Sbjct: 372 REGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDV 431
Query: 288 SMNEVAAAVYDMMG 301
++ A + D G
Sbjct: 432 LPEQIKAVLLDTAG 445
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 15/195 (7%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRI 168
++ ER RRK++ + L +LRS++P + + D+ASI+G AI+Y+KEL Q + L H +
Sbjct: 308 NLMAERRRRKKLNDRLYMLRSVVP--KISKMDRASILGDAIDYLKELLQRINDL--HNEL 363
Query: 169 HILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKKPSGPVADIEVTM 228
+ ++S F PQ R + SS P G A +EV +
Sbjct: 364 ------ESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLP--SPKGQQARVEVRL 415
Query: 229 AESNA-NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSV-KVEEGCHL 286
E A NI + R P L + +LGL V ++ F+ L F + +EG +
Sbjct: 416 REGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEI 475
Query: 287 RSMNEVAAAVYDMMG 301
+++ A ++D G
Sbjct: 476 LP-DQIKAVLFDTAG 489
>sp|Q9FXA3|BH095_ARATH Transcription factor bHLH95 OS=Arabidopsis thaliana GN=BHLH95 PE=2
SV=2
Length = 308
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 89 KRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGA 148
K+R R+ KN EE HI+ ER RRK+M++ S L +L+ P + D+++IV A
Sbjct: 54 KKRTKRNDKNHEEESPDHEIHIWTERERRKKMRDMFSKLHALL-PQLPPKADKSTIVDEA 112
Query: 149 INYVKELEQLVQTLEVHK 166
++ +K LEQ +Q LE+ K
Sbjct: 113 VSSIKSLEQTLQKLEMQK 130
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2
Length = 623
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 25/219 (11%)
Query: 83 LACHLRKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQA 142
+A R ++R R N E + + H+ ER RR+++ LR+++P V + D+A
Sbjct: 430 VAVEKRPKKRGRKPANGRE---EPLNHVEAERQRREKLNQRFYALRAVVP--NVSKMDKA 484
Query: 143 SIVGGAINYVKELEQLVQTLEVHKRIHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFR 202
S++G AI Y+ EL+ V E K + I Q ++ + AG S
Sbjct: 485 SLLGDAIAYINELKSKVVKTESEK-LQIKNQLEEVKLELAGRKASASGGDM--------- 534
Query: 203 PNDSRESSSTAPKKPSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLH 262
SSS + KP G +IEV + +A I++ S++ ++++ L L V H
Sbjct: 535 ------SSSCSSIKPVG--MEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNH 586
Query: 263 LNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301
+++ ++ ++ +VK+ G + + ++ A++ +G
Sbjct: 587 ASMSVVNDLMIQQATVKM--GFRIYTQEQLRASLISKIG 623
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana
GN=AMS PE=1 SV=2
Length = 571
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRI 168
++ ER RRK++ + L LRSL+P + + D+ASI+G AINYVKEL+ + E+ +
Sbjct: 315 NLMAERRRRKKLNDRLYALRSLVP--RITKLDRASILGDAINYVKELQN--EAKELQDEL 370
Query: 169 HILQQSDDHDHDDAG---FSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKKPSGPVADIE 225
+++D + G + ++ + F + P+ ++ G + +
Sbjct: 371 EENSETEDGSNRPQGGMSLNGTVVTGFHPGLSCNSNVPS-VKQDVDLENSNDKGQEMEPQ 429
Query: 226 VTMAESNAN---IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVK 279
V +A+ + +K++ P +++ SLGL V + N + + V F V+
Sbjct: 430 VDVAQLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVFKVE 486
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis
thaliana GN=AIB PE=2 SV=2
Length = 566
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 88 RKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGG 147
R R+R R N E + + H+ ER RR+++ LRS++P + + D+AS++G
Sbjct: 378 RPRKRGRKPANGRE---EPLNHVEAERQRREKLNQRFYALRSVVP--NISKMDKASLLGD 432
Query: 148 AINYVKELEQLVQTLE 163
AI+Y+KEL++ V+ +E
Sbjct: 433 AISYIKELQEKVKIME 448
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2
SV=1
Length = 248
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 14/175 (8%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRI 168
+I ERNRR+++ L LRS++P + + D+ASI+ AI+Y++ L+ + LE R
Sbjct: 56 NIVSERNRRQKLNQRLFALRSVVPN--ITKMDKASIIKDAISYIEGLQYEEKKLEAEIR- 112
Query: 169 HILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKKPSGPVADIEVT- 227
+ + FS + + DS S+S V +++VT
Sbjct: 113 ----ELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLI------EVLELKVTF 162
Query: 228 MAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEE 282
M E + + + + K+ F SL L +L N+ +F + +T ++ +E
Sbjct: 163 MGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFIEADE 217
>sp|Q700E3|BH027_ARATH Transcription factor bHLH27 OS=Arabidopsis thaliana GN=BHLH27 PE=2
SV=1
Length = 263
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 12/178 (6%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKR- 167
++ ERNRR+++ L LRS++P + + D+AS++ +I+Y++EL +TLE R
Sbjct: 55 NVVSERNRRQKLNQRLFALRSVVPN--ISKLDKASVIKDSIDYMQELIDQEKTLEAEIRE 112
Query: 168 ---IHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESS-STAPKKPSGPVAD 223
L ++ D+ D F+ + + F +D R ++ ST + V +
Sbjct: 113 LESRSTLLENPVRDY-DCNFAETHLQD---FSDNNDMRSKKFKQMDYSTRVQHYPIEVLE 168
Query: 224 IEVT-MAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKV 280
++VT M E + I ++ + + ++ SL L++L N ++F +++ T ++V
Sbjct: 169 MKVTWMGEKTVVVCITCSKKRETMVQLCKVLESLNLNILTTNFSSFTSRLSTTLFLQV 226
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 88 RKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGG 147
+ R+R R N E + + H+ ER RR+++ LR+++P V + D+AS++G
Sbjct: 399 KPRKRGRKPANGRE---EPLNHVEAERQRREKLNQRFYSLRAVVP--NVSKMDKASLLGD 453
Query: 148 AINYVKELEQLVQTLEVHKRIHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSR 207
AI+Y+ EL+ +Q E K LQ+ D + +AG + S + Q
Sbjct: 454 AISYISELKSKLQKAESDK--EELQKQIDVMNKEAGNAKSSVKDRKCLNQ---------- 501
Query: 208 ESSSTAPKKPSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT 267
ESS +++V + +A I+I ++ K + L L V H +++
Sbjct: 502 ESSVLIE-------MEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSV 554
Query: 268 FDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301
++ ++ +VK+ G + +++ A+ + +G
Sbjct: 555 VNDLMIQQATVKM--GNQFFTQDQLKVALTEKVG 586
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1
Length = 592
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 75 ESRPLEPPLACHLRKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPS 134
E+ +EPP + R+R R N E + + H+ ER RR+++ LR+++P
Sbjct: 388 EAIVVEPP---EKKPRKRGRKPANGRE---EPLNHVEAERQRREKLNQRFYSLRAVVPN- 440
Query: 135 YVQRGDQASIVGGAINYVKELEQLVQTLEVHK 166
V + D+AS++G AI+Y+ EL+ +Q E K
Sbjct: 441 -VSKMDKASLLGDAISYINELKSKLQQAESDK 471
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1
Length = 612
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLE 163
H+ ER RR+++ VL+SL+P + R ++ASI+ I Y+KEL++ VQ LE
Sbjct: 419 HVMSERKRREKLNEMFLVLKSLLP--SIHRVNKASILAETIAYLKELQRRVQELE 471
>sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1
Length = 610
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHK 166
H+ ER RR+++ VL+SL+P + R ++ASI+ I Y+KEL++ VQ LE +
Sbjct: 417 HVMSERKRREKLNEMFLVLKSLLP--SIHRVNKASILAETIAYLKELQRRVQELESSR 472
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION
FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1
Length = 318
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 101 EVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQ 160
+ ++ R + ER RR +MK+ L LRSL+P + + D+ASIVG A+ YV+EL+ +
Sbjct: 124 KTKTDRSRTLISERRRRGRMKDKLYALRSLVP--NITKMDKASIVGDAVLYVQELQSQAK 181
Query: 161 TLE 163
L+
Sbjct: 182 KLK 184
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2
SV=1
Length = 590
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 56/232 (24%)
Query: 53 TQKMAKTNSSTCGGG--GDGFFTGESRPLEPPLACHLRKRRRTRSVKNIEEVESQRMTHI 110
+ + ++ NS GGG D ES + R R+R R N ++ + H+
Sbjct: 387 SSRASENNSDGEGGGEWADAVGADES--------GNNRPRKRGRRPAN---GRAEALNHV 435
Query: 111 FVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHI 170
ER RR+++ LRS++P + + D+AS++G A++Y+ EL H ++ +
Sbjct: 436 EAERQRREKLNQRFYALRSVVP--NISKMDKASLLGDAVSYINEL---------HAKLKV 484
Query: 171 LQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKKPSGPVADIEVTMAE 230
++ + + G+S++ P +DI V +
Sbjct: 485 MEA----ERERLGYSSN----------------------------PPISLDSDINVQTSG 512
Query: 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEE 282
+ ++I ++ F + V++ N+ + VL+TF VK EE
Sbjct: 513 EDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVKSEE 564
>sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2
SV=1
Length = 467
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 88 RKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGG 147
+ R+R R N E + + H+ ER RR+++ LR+++P + + D+AS++
Sbjct: 303 KPRKRGRKPANGRE---EALNHVEAERQRREKLNQRFYALRAVVPN--ISKMDKASLLAD 357
Query: 148 AINYVKELEQLVQTLEVHKRIHILQQSD---------DHDHDDA 182
AI Y+ ++++ ++ E K+I ++S+ HDDA
Sbjct: 358 AITYITDMQKKIRVYETEKQIMKRRESNQITPAEVDYQQRHDDA 401
>sp|Q9LQ08|BH125_ARATH Transcription factor bHLH125 OS=Arabidopsis thaliana GN=BHLH125
PE=2 SV=1
Length = 259
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 97 KNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQ--RGDQASIVGGAINYVKE 154
KN ++ ES++M H +ER RR+++ + LR+L+P Y+Q R IV A+NY+K+
Sbjct: 66 KNDDDRESKKMKHRDIERQRRQEVSSLFKRLRTLLPFQYIQGKRSTSDHIV-QAVNYIKD 124
Query: 155 LEQLVQTL 162
L+ ++ L
Sbjct: 125 LQIKIKEL 132
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2
Length = 518
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 107 MTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLE 163
++H+ ER RR+++ LRS++P +V + D+ SI+G I YV L + V LE
Sbjct: 362 LSHVVAERRRREKLNEKFITLRSMVP--FVTKMDKVSILGDTIAYVNHLRKRVHELE 416
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2
SV=1
Length = 423
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 88 RKRRRTRSVKNIEEVESQR-----MTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQA 142
RKRRR + ++ ++H+ E+ RR+++ + LR+++P V R D+A
Sbjct: 224 RKRRRKLETTRVAAATKEKHHPAVLSHVEAEKQRREKLNHRFYALRAIVPK--VSRMDKA 281
Query: 143 SIVGGAINYVKELEQLVQTLEVHKRIHILQQSDDHD 178
S++ A++Y++ L+ + LE + + ++D D
Sbjct: 282 SLLSDAVSYIESLKSKIDDLETEIKKMKMTETDKLD 317
>sp|Q9T072|BH025_ARATH Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2
SV=2
Length = 328
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 90/212 (42%), Gaps = 33/212 (15%)
Query: 90 RRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAI 149
R+ T+ + +S HI ER RR+++ L +L+P +++ D+AS++G A+
Sbjct: 134 RKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPG--LKKMDKASVLGDAL 191
Query: 150 NYVKELEQLVQTLEVHKR-------IHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFR 202
++K L++ V LE K+ + + + D ++ FS+S F SD
Sbjct: 192 KHIKYLQERVGELEEQKKERRLESMVLVKKSKLILDDNNQSFSSSCEDGF------SDLD 245
Query: 203 PNDSRESSSTAPKKPSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLH 262
+ +IEV ++ + IKIL + L K++ L + + +
Sbjct: 246 ------------------LPEIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITN 287
Query: 263 LNVATFDNQVLYTFSVKVEEGCHLRSMNEVAA 294
+V F + T K E + M+ V +
Sbjct: 288 SSVLNFGPTLDITIIAKKESDFDMTLMDVVKS 319
>sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1
SV=1
Length = 351
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 97 KNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELE 156
K +++E Q ++ ER RRK++ + LS+LRS++P + + D+ SI+G AI+Y+KEL
Sbjct: 167 KKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPK--ISKMDRTSILGDAIDYMKELL 224
Query: 157 QLVQTLEVHKRIHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESSSTAPKK 216
+ L+ D + + + S S F D ++ ++ P
Sbjct: 225 DKINKLQ------------DEEQELGNSNNSHHSKLFG----------DLKDLNANEPLV 262
Query: 217 PSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTF 276
+ P E+ + + + I + P L V +LGL + ++ F + ++
Sbjct: 263 RNSP--KFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLGLEIEQCVISCFSD---FSL 317
Query: 277 SVKVEEGCHLR 287
EG R
Sbjct: 318 QASCSEGAEQR 328
>sp|O81900|DYT1_ARATH Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis
thaliana GN=DYT1 PE=2 SV=1
Length = 207
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 31/217 (14%)
Query: 74 GESRPLEPPLACHLRKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPP 133
G SR EP +R RR + K EE E+ + ++ ER RR+++ L LRS +P
Sbjct: 3 GGSRFQEP-----VRMSRRKQVTKEKEEDENFKSPNLEAERRRREKLHCRLMALRSHVP- 56
Query: 134 SYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHILQQSD---DHDHDDAGFSTSIFS 190
V +ASIV AI Y+ EL+ V+ L + H ++++ D + D +
Sbjct: 57 -IVTNMTKASIVEDAITYIGELQNNVKNL--LETFHEMEEAPPEIDEEQTDPMIKPEV-- 111
Query: 191 NFFSFPQYSDFRPNDSRESSSTAPKKPSGPVADIEVT-MAESNANIKILSTRYPKQLFKM 249
+ SD K G ++++ + E +KI++ + K
Sbjct: 112 ------ETSDL----------NEEMKKLGIEENVQLCKIGERKFWLKIITEKRDGIFTKF 155
Query: 250 VTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHL 286
+ LG ++ +++ T + +L + SV+ +E C +
Sbjct: 156 MEVMRFLGFEIIDISLTTSNGAILISASVQTQELCDV 192
>sp|Q9LN95|BH055_ARATH Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2
SV=1
Length = 257
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 96 VKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQ-RGDQASIVGGAINYVKE 154
+K +E +++R H +ER RR++ + +LR L+P Y++ + A V A+NY+K+
Sbjct: 66 MKGDDEPKNKRAKHKELERQRRQENTSLFKILRYLLPSQYIKGKRSSADHVLEAVNYIKD 125
Query: 155 LEQLVQTLEVHKRIHILQQSDDHDHDDAGFS 185
L++ ++ EV ++ +++S H FS
Sbjct: 126 LQKKIK--EVSEKRDRIKRSITHPSSRGEFS 154
>sp|Q1PF17|BH018_ARATH Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2
SV=1
Length = 305
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 24/200 (12%)
Query: 91 RRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAIN 150
R T+ +++ +S HI ER RR+++ L +L+P +++ D+AS++G AI
Sbjct: 109 RGTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIP--GLKKMDKASVLGDAIK 166
Query: 151 YVKELEQLVQTLEVHKRIHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESS 210
++K L++ V+ E K+ ++ + + S + +P+ S S
Sbjct: 167 HIKYLQESVKEYEEQKKEKTME-------------SVVLVKKSSLVLDENHQPSSSSSSD 213
Query: 211 STAPKKPSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNV----A 266
S + +IEV ++ + IKIL + + K++ LGL + + NV
Sbjct: 214 GNRNSSSSN-LPEIEVRVSGKDVLIKILCEKQKGNVIKIMGEIEKLGLSITNSNVLPFGP 272
Query: 267 TFDNQVLY----TFSVKVEE 282
TFD ++ F +K+E+
Sbjct: 273 TFDISIIAQKNNNFDMKIED 292
>sp|Q9FIX5|BH092_ARATH Transcription factor bHLH92 OS=Arabidopsis thaliana GN=BHLH92 PE=2
SV=1
Length = 247
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRI 168
H+ ER RR++ K L SL+P + + D+ SIV A++ + +L++L + E+ +RI
Sbjct: 90 HMLKERTRREKQKQSYLALHSLLP--FATKNDKNSIVEKAVDEIAKLQRLKK--ELVRRI 145
Query: 169 HILQQSDDHDHDDAGFSTSIFSNF 192
++++ D D T + N
Sbjct: 146 KVIEEKSAKDGHDEMSETKVRVNL 169
>sp|Q8S3F1|BH020_ARATH Transcription factor NAI1 OS=Arabidopsis thaliana GN=NAI1 PE=2 SV=1
Length = 320
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLE 163
H+ ER RR+++ L L +L+P +++ D+A+++ AI ++K+L++ V+ LE
Sbjct: 133 HVLAERKRRQKLNERLIALSALLPG--LKKTDKATVLEDAIKHLKQLQERVKKLE 185
>sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1
SV=1
Length = 637
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 101 EVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQ 160
E + H +E+ RR+++ LR ++P + + D+ SI+ I Y++ELE+ VQ
Sbjct: 434 EARDETGNHAVLEKKRREKLNERFMTLRKIIPS--INKIDKVSILDDTIEYLQELERRVQ 491
Query: 161 TLE 163
LE
Sbjct: 492 ELE 494
>sp|Q9LXA9|BH061_ARATH Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2
SV=1
Length = 315
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 35/177 (19%)
Query: 92 RTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINY 151
T ++ +++E Q ++ ER RRK++ + LS+LRS++P + + D+ SI+G AI+Y
Sbjct: 135 ETNKKRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPK--ITKMDRTSILGDAIDY 192
Query: 152 VKELEQLVQTLEVHKRIHILQQSDDHDHDDAGFSTSIFSNFFSFPQYSDFRPNDSRESSS 211
+KEL +I+ LQ+ + ++ ST I N+S +S
Sbjct: 193 MKEL---------LDKINKLQEDEQELGSNSHLSTLI--------------TNESMVRNS 229
Query: 212 TAPKKPSGPVADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF 268
EV E N +I I P + V+ +LGL + ++ F
Sbjct: 230 LK----------FEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCVISCF 276
>sp|Q9LND0|BH089_ARATH Transcription factor bHLH89 OS=Arabidopsis thaliana GN=BHLH89 PE=2
SV=1
Length = 420
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 112 VERNRRKQMKNYLSVLRSLMP-PSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHI 170
ER RR K+ L++L+P P+ + D+ASIVG AI+Y+KEL + + ++
Sbjct: 220 TERERRVHFKDRFGDLKNLIPNPT---KNDRASIVGEAIDYIKELLRTIDEFKLLVEKKR 276
Query: 171 LQQSDDHDHDDAGFSTSIFSNFFSFPQYSD-FRPNDSRESSSTAPKKPSGPVADIEVTMA 229
++Q + + DD + NF + + + N + + K D++V +
Sbjct: 277 VKQR-NREGDDV-----VDENFKAQSEVVEQCLINKKNNALRCSWLKRKSKFTDVDVRII 330
Query: 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSM 289
+ IKI+ + L + L L + H+ A + F+ K+ EG + +
Sbjct: 331 DDEVTIKIVQKKKINCLLFVSKVVDQLELDLHHVAGAQIGEHHSFLFNAKISEGSSVYA- 389
Query: 290 NEVAAAVYDMMGRVQGEA 307
+ +A V +++ + EA
Sbjct: 390 SAIADRVMEVLKKQYMEA 407
>sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2
SV=1
Length = 174
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQ-RGDQASIVGGAINYVKELEQLVQTLE 163
++M H ER RR++M + + LRSL+P +++ + + V A+NY+K L++ ++ L
Sbjct: 2 EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61
Query: 164 VHK 166
V +
Sbjct: 62 VRR 64
>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1
Length = 210
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEV 164
H E+ RR ++ + L+ L+P S + D+AS++ AI Y+K+L+ VQTL V
Sbjct: 98 HNLSEKKRRSKINEKMKALQKLIPNS--NKTDKASMLDEAIEYLKQLQLQVQTLAV 151
>sp|Q63665|USF2_RAT Upstream stimulatory factor 2 OS=Rattus norvegicus GN=Usf2 PE=1
SV=2
Length = 346
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 69 DGFFTGESRPLEPPLACHLRKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLR 128
D TG R + P + K TR+ ++ E +R H VER RR ++ N++ L
Sbjct: 204 DVLQTGTQRTIAPRTHPYSPKIDGTRTPRD----ERRRAQHNEVERRRRDKINNWIVQLS 259
Query: 129 SLMPPSYVQRGDQASIVGG----AINYVKELEQLVQTL-EVHKRIHILQQSDD 176
++P + + GG A +Y++EL Q Q + E K LQ ++
Sbjct: 260 KIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNE 312
>sp|Q64705|USF2_MOUSE Upstream stimulatory factor 2 OS=Mus musculus GN=Usf2 PE=1 SV=1
Length = 346
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 69 DGFFTGESRPLEPPLACHLRKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLR 128
D TG R + P + K TR+ ++ E +R H VER RR ++ N++ L
Sbjct: 204 DVLQTGTQRTIAPRTHPYSPKIDGTRTPRD----ERRRAQHNEVERRRRDKINNWIVQLS 259
Query: 129 SLMPPSYVQRGDQASIVGG----AINYVKELEQLVQTL-EVHKRIHILQQSDD 176
++P + + GG A +Y++EL Q Q + E K LQ ++
Sbjct: 260 KIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNE 312
>sp|P0CB25|BH131_ARATH Transcription factor bHLH131 OS=Arabidopsis thaliana GN=BHLH131
PE=2 SV=1
Length = 256
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 17/97 (17%)
Query: 100 EEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLV 159
+EV +++ H ER RR ++ + + LR+++P Q D+AS++G + Y EL+++V
Sbjct: 89 KEVAAKK--HSDAERRRRLRINSQFATLRTILPNLVKQ--DKASVLGETVRYFNELKKMV 144
Query: 160 Q------TLEVHKRIHILQQSDDHDHDDAGFSTSIFS 190
Q +LE + R+ DH +++ + +FS
Sbjct: 145 QDIPTTPSLEDNLRL-------DHCNNNRDLARVVFS 174
>sp|Q9CAD0|EGL1_ARATH Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1
SV=1
Length = 596
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLE 163
H E+ RR+++ LRS++P + + D+ SI+ I Y+++L++ VQ LE
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPS--ISKIDKVSILDDTIEYLQDLQKRVQELE 458
>sp|P23999|MYCS_RAT Protein S-Myc OS=Rattus norvegicus GN=Mycs PE=3 SV=1
Length = 429
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 82 PLACHLRK---RRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPP-SYVQ 137
PL C LR R R+RS ++E++E +R H +ER RR M++ LR L+P + +
Sbjct: 322 PLKCVLRPKAPRLRSRSNSDLEDIERRR-NHNRMERQRRDIMRSSFLNLRDLVPELVHNE 380
Query: 138 RGDQASIVGGAINYVKELE 156
+ + I+ A Y+ L+
Sbjct: 381 KAAKVVILKKATEYIHTLQ 399
>sp|Q8L5W8|PIL1_ARATH Transcription factor PIL1 OS=Arabidopsis thaliana GN=PIL1 PE=1 SV=1
Length = 416
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 86 HLRKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIV 145
H R R+ K EV H ER RR + + L+ L+P Y + D+AS++
Sbjct: 217 HARTRKPVTKRKRSTEV------HKLYERKRRDEFNKKMRALQDLLPNCY--KDDKASLL 268
Query: 146 GGAINYVKELEQLVQTLEV 164
AI Y++ L+ VQ + +
Sbjct: 269 DEAIKYMRTLQLQVQMMSM 287
>sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1
SV=1
Length = 373
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 109 HIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRI 168
H E+ RR ++ + L+SL+P S + D+AS++ AI Y+K+L+ VQ L + I
Sbjct: 202 HNLSEKRRRSRINEKMKALQSLIPNS--NKTDKASMLDEAIEYLKQLQLQVQMLTMRNGI 259
Query: 169 HI 170
++
Sbjct: 260 NL 261
>sp|Q9STJ7|BH118_ARATH Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118
PE=2 SV=1
Length = 163
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQ-RGDQASIVGGAINYVKELEQ 157
+++ H +E+ RR++M + + LRSL+P ++Q + + V GA+NY+ L++
Sbjct: 2 EKLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQR 55
>sp|Q9SVU6|BH023_ARATH Transcription factor bHLH23 OS=Arabidopsis thaliana GN=BHLH23 PE=2
SV=1
Length = 413
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 19/115 (16%)
Query: 63 TCGGGGDGFFTGESRPLEPPLACHL----RKRRRTRSVKNIEE---------VESQR--- 106
T G G E+ P++ A ++R+TR N+E S+R
Sbjct: 219 TAGTQSWGLCKAETEPVQRQPATETDITDERKRKTREETNVENQGTEEARDSTSSKRSRA 278
Query: 107 -MTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQ 160
+ H ER RR+++ + L+ L+P + D++S++ I YVK L+ +Q
Sbjct: 279 AIMHKLSERRRRQKINEMMKALQELLP--RCTKTDRSSMLDDVIEYVKSLQSQIQ 331
>sp|Q15853|USF2_HUMAN Upstream stimulatory factor 2 OS=Homo sapiens GN=USF2 PE=2 SV=1
Length = 346
Score = 38.1 bits (87), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 69 DGFFTGESRPLEPPLACHLRKRRRTRSVKNIEEVESQRMTHIFVERNRRKQMKNYLSVLR 128
D TG R + P + K TR+ ++ E +R H VER RR ++ N++ L
Sbjct: 204 DVLQTGTQRTIAPRTHPYSPKIDGTRTPRD----ERRRAQHNEVERRRRDKINNWIVQLS 259
Query: 129 SLMPPSYVQRGDQASIVGG----AINYVKELEQLVQTL-EVHKRIHILQQSDD 176
++P + GG A +Y++EL Q Q + E K LQ ++
Sbjct: 260 KIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNE 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,926,586
Number of Sequences: 539616
Number of extensions: 4670792
Number of successful extensions: 12720
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 12637
Number of HSP's gapped (non-prelim): 135
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)