Query 043618
Match_columns 310
No_of_seqs 214 out of 1235
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:40:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.4 1.4E-13 3.1E-18 98.7 5.7 52 105-156 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.4 5.1E-13 1.1E-17 96.7 5.8 57 104-160 3-60 (60)
3 smart00353 HLH helix loop heli 99.3 2.2E-12 4.8E-17 91.4 5.9 51 110-160 1-52 (53)
4 KOG1318 Helix loop helix trans 99.0 1.3E-09 2.8E-14 106.7 10.3 62 100-161 228-291 (411)
5 KOG1319 bHLHZip transcription 98.7 2.5E-08 5.4E-13 87.7 5.8 68 104-171 61-133 (229)
6 cd04897 ACT_ACR_3 ACT domain-c 98.6 6.5E-07 1.4E-11 68.6 10.4 69 234-302 3-74 (75)
7 KOG3960 Myogenic helix-loop-he 98.5 2.1E-07 4.7E-12 85.2 6.6 66 103-169 116-182 (284)
8 cd04895 ACT_ACR_1 ACT domain-c 98.4 5.1E-06 1.1E-10 63.2 9.8 55 234-288 3-57 (72)
9 KOG4304 Transcriptional repres 98.3 3.6E-07 7.7E-12 85.0 4.0 59 102-160 29-93 (250)
10 KOG2483 Upstream transcription 98.3 2.4E-06 5.2E-11 78.5 8.4 63 105-167 59-122 (232)
11 cd04896 ACT_ACR-like_3 ACT dom 98.3 9E-06 1.9E-10 62.3 9.8 67 234-301 2-73 (75)
12 cd04927 ACT_ACR-like_2 Second 98.2 9.6E-06 2.1E-10 61.9 9.1 68 233-301 1-72 (76)
13 KOG0561 bHLH transcription fac 98.2 1.1E-06 2.3E-11 82.6 4.1 57 106-162 61-117 (373)
14 cd04900 ACT_UUR-like_1 ACT dom 98.2 3.4E-05 7.4E-10 58.0 10.9 53 234-286 3-56 (73)
15 KOG3561 Aryl-hydrocarbon recep 98.1 2E-06 4.3E-11 90.7 4.9 53 106-158 21-75 (803)
16 KOG2588 Predicted DNA-binding 98.1 3.6E-06 7.7E-11 89.2 4.8 66 103-169 274-339 (953)
17 cd04925 ACT_ACR_2 ACT domain-c 98.0 8.4E-05 1.8E-09 56.2 10.6 67 234-300 2-72 (74)
18 KOG4029 Transcription factor H 98.0 2.2E-05 4.7E-10 72.0 7.6 64 103-166 107-172 (228)
19 cd04899 ACT_ACR-UUR-like_2 C-t 97.8 0.00051 1.1E-08 50.4 10.7 52 234-285 2-53 (70)
20 cd04928 ACT_TyrKc Uncharacteri 97.8 0.00034 7.4E-09 52.6 9.6 64 234-300 3-67 (68)
21 cd04926 ACT_ACR_4 C-terminal 97.7 0.00054 1.2E-08 51.4 9.9 66 234-301 3-68 (72)
22 PLN03217 transcription factor 97.5 0.00018 3.9E-09 55.9 5.3 54 118-171 20-77 (93)
23 KOG4447 Transcription factor T 97.5 0.00013 2.8E-09 62.6 4.6 65 96-160 69-133 (173)
24 PF13740 ACT_6: ACT domain; PD 97.5 0.0013 2.8E-08 49.9 9.5 68 232-303 2-69 (76)
25 PF01842 ACT: ACT domain; Int 97.2 0.0048 1E-07 44.1 9.0 63 234-299 2-64 (66)
26 PRK05007 PII uridylyl-transfer 97.1 0.0029 6.2E-08 68.7 11.0 73 230-302 806-880 (884)
27 PRK00275 glnD PII uridylyl-tra 97.1 0.0034 7.4E-08 68.3 11.6 83 222-304 802-889 (895)
28 cd04873 ACT_UUR-ACR-like ACT d 97.1 0.0082 1.8E-07 43.4 10.2 51 234-284 2-52 (70)
29 cd04869 ACT_GcvR_2 ACT domains 97.1 0.0071 1.5E-07 45.6 10.1 69 235-306 2-76 (81)
30 PF13291 ACT_4: ACT domain; PD 97.1 0.0018 4E-08 49.1 6.6 52 232-283 6-59 (80)
31 cd04893 ACT_GcvR_1 ACT domains 97.1 0.0078 1.7E-07 45.7 10.0 66 233-302 2-67 (77)
32 PRK05092 PII uridylyl-transfer 97.1 0.0041 8.9E-08 67.9 11.6 83 222-304 831-918 (931)
33 PRK04374 PII uridylyl-transfer 96.9 0.0065 1.4E-07 65.9 11.5 80 222-301 784-867 (869)
34 cd04872 ACT_1ZPV ACT domain pr 96.9 0.0051 1.1E-07 47.7 7.5 70 233-304 2-71 (88)
35 PRK00194 hypothetical protein; 96.9 0.0059 1.3E-07 47.4 7.9 71 232-304 3-73 (90)
36 PRK01759 glnD PII uridylyl-tra 96.9 0.006 1.3E-07 66.1 10.5 70 231-300 782-853 (854)
37 cd04875 ACT_F4HF-DF N-terminal 96.8 0.013 2.9E-07 43.7 9.3 69 235-303 2-70 (74)
38 cd04887 ACT_MalLac-Enz ACT_Mal 96.7 0.0097 2.1E-07 44.0 7.3 51 235-285 2-53 (74)
39 cd04870 ACT_PSP_1 CT domains f 96.6 0.021 4.5E-07 42.9 9.0 67 235-304 2-68 (75)
40 TIGR01693 UTase_glnD [Protein- 96.6 0.016 3.5E-07 62.7 11.2 72 231-302 667-742 (850)
41 PRK03059 PII uridylyl-transfer 96.5 0.013 2.8E-07 63.5 9.7 49 231-279 785-833 (856)
42 TIGR01693 UTase_glnD [Protein- 96.5 0.017 3.7E-07 62.5 10.7 69 231-299 778-848 (850)
43 PRK03381 PII uridylyl-transfer 96.5 0.021 4.5E-07 61.3 11.0 72 230-302 597-668 (774)
44 PRK03381 PII uridylyl-transfer 96.3 0.023 4.9E-07 61.0 10.5 57 231-287 706-762 (774)
45 cd04886 ACT_ThrD-II-like C-ter 96.2 0.024 5.2E-07 40.7 7.1 48 235-282 1-53 (73)
46 KOG3910 Helix loop helix trans 96.2 0.0056 1.2E-07 61.4 4.5 59 104-162 525-585 (632)
47 PRK01759 glnD PII uridylyl-tra 96.1 0.05 1.1E-06 59.1 11.5 78 222-300 665-748 (854)
48 cd04888 ACT_PheB-BS C-terminal 96.1 0.031 6.8E-07 41.3 7.1 63 234-298 2-65 (76)
49 PRK05007 PII uridylyl-transfer 96.0 0.063 1.4E-06 58.5 11.6 71 230-301 699-773 (884)
50 PRK00275 glnD PII uridylyl-tra 95.9 0.054 1.2E-06 59.1 11.1 70 231-300 703-777 (895)
51 COG2844 GlnD UTP:GlnB (protein 95.9 0.031 6.7E-07 59.6 8.8 78 221-300 778-857 (867)
52 PRK05092 PII uridylyl-transfer 95.9 0.07 1.5E-06 58.5 11.6 79 222-300 720-804 (931)
53 PRK03059 PII uridylyl-transfer 95.8 0.061 1.3E-06 58.4 10.8 69 231-300 677-749 (856)
54 PRK04435 hypothetical protein; 95.8 0.06 1.3E-06 46.2 8.5 68 228-297 65-133 (147)
55 PRK04374 PII uridylyl-transfer 95.4 0.087 1.9E-06 57.3 10.3 71 231-301 689-760 (869)
56 cd04880 ACT_AAAH-PDT-like ACT 95.3 0.11 2.3E-06 38.8 7.5 48 236-283 3-51 (75)
57 KOG3898 Transcription factor N 95.3 0.023 5.1E-07 53.2 4.6 57 103-159 70-127 (254)
58 cd02116 ACT ACT domains are co 95.1 0.13 2.8E-06 33.6 6.8 35 235-269 1-35 (60)
59 cd04877 ACT_TyrR N-terminal AC 95.1 0.058 1.3E-06 40.3 5.6 46 234-282 2-47 (74)
60 cd04876 ACT_RelA-SpoT ACT dom 94.8 0.11 2.4E-06 35.8 6.1 48 235-282 1-49 (71)
61 cd04878 ACT_AHAS N-terminal AC 94.7 0.16 3.5E-06 36.2 6.8 47 234-280 2-50 (72)
62 cd04884 ACT_CBS C-terminal ACT 94.6 0.27 5.8E-06 36.3 7.9 61 235-298 2-65 (72)
63 KOG3560 Aryl-hydrocarbon recep 94.6 0.023 5E-07 57.8 2.6 45 109-153 29-75 (712)
64 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.5 0.12 2.6E-06 37.6 5.8 48 233-280 1-50 (79)
65 PRK13011 formyltetrahydrofolat 94.3 0.37 8.1E-06 45.8 10.1 73 232-305 7-79 (286)
66 cd04905 ACT_CM-PDT C-terminal 94.3 0.36 7.7E-06 36.5 8.2 50 234-283 3-53 (80)
67 PRK08577 hypothetical protein; 94.2 0.51 1.1E-05 39.6 9.7 65 232-298 56-122 (136)
68 cd04874 ACT_Af1403 N-terminal 94.2 0.42 9.1E-06 34.1 8.0 35 234-268 2-36 (72)
69 PRK06027 purU formyltetrahydro 94.1 0.42 9.1E-06 45.4 10.0 73 231-305 5-79 (286)
70 cd04894 ACT_ACR-like_1 ACT dom 94.0 0.37 8E-06 35.8 7.3 65 234-298 2-66 (69)
71 PRK07334 threonine dehydratase 93.9 0.22 4.7E-06 49.4 8.1 52 232-283 326-382 (403)
72 cd04882 ACT_Bt0572_2 C-termina 93.7 0.46 1E-05 33.6 7.4 56 235-298 2-59 (65)
73 cd04879 ACT_3PGDH-like ACT_3PG 93.5 0.5 1.1E-05 33.4 7.3 44 235-278 2-47 (71)
74 cd04908 ACT_Bt0572_1 N-termina 93.1 1.1 2.3E-05 32.5 8.6 45 234-280 3-47 (66)
75 PRK13010 purU formyltetrahydro 93.0 0.65 1.4E-05 44.3 9.2 70 232-304 9-82 (289)
76 cd04903 ACT_LSD C-terminal ACT 93.0 0.6 1.3E-05 33.1 7.1 33 235-267 2-34 (71)
77 TIGR00655 PurU formyltetrahydr 92.9 0.79 1.7E-05 43.5 9.7 68 234-303 2-72 (280)
78 cd04909 ACT_PDH-BS C-terminal 92.8 0.87 1.9E-05 33.0 7.9 35 234-268 3-37 (69)
79 cd04883 ACT_AcuB C-terminal AC 92.8 1.3 2.9E-05 32.1 8.9 59 234-298 3-63 (72)
80 cd04931 ACT_PAH ACT domain of 92.3 1.1 2.3E-05 35.4 8.2 51 233-283 15-66 (90)
81 PRK11895 ilvH acetolactate syn 92.3 0.63 1.4E-05 40.7 7.5 65 234-302 4-70 (161)
82 CHL00100 ilvH acetohydroxyacid 92.3 0.74 1.6E-05 40.8 8.0 70 234-305 4-73 (174)
83 cd04904 ACT_AAAH ACT domain of 92.2 0.88 1.9E-05 34.1 7.4 47 236-282 4-51 (74)
84 cd04889 ACT_PDH-BS-like C-term 92.2 0.74 1.6E-05 32.1 6.5 45 235-279 1-46 (56)
85 TIGR00119 acolac_sm acetolacta 92.0 0.68 1.5E-05 40.3 7.3 64 234-301 3-68 (157)
86 COG2844 GlnD UTP:GlnB (protein 91.8 1.1 2.3E-05 48.3 9.8 85 221-306 673-758 (867)
87 PRK06737 acetolactate synthase 91.5 0.81 1.8E-05 35.1 6.4 65 233-301 3-69 (76)
88 PRK13562 acetolactate synthase 91.3 0.75 1.6E-05 36.0 6.1 66 234-302 4-71 (84)
89 cd04885 ACT_ThrD-I Tandem C-te 90.8 1.5 3.2E-05 32.1 7.2 59 236-298 2-61 (68)
90 PRK11152 ilvM acetolactate syn 90.6 1.6 3.5E-05 33.5 7.4 64 233-301 4-69 (76)
91 cd04929 ACT_TPH ACT domain of 89.8 3.5 7.6E-05 31.2 8.6 46 237-282 5-51 (74)
92 PF13710 ACT_5: ACT domain; PD 89.6 0.83 1.8E-05 33.5 4.9 56 241-300 1-58 (63)
93 PRK11589 gcvR glycine cleavage 89.6 2.3 4.9E-05 38.2 8.7 73 233-308 96-174 (190)
94 cd04901 ACT_3PGDH C-terminal A 89.2 0.38 8.1E-06 34.7 2.8 47 235-281 2-48 (69)
95 PRK10872 relA (p)ppGpp synthet 89.1 1.2 2.5E-05 47.9 7.4 64 222-285 651-721 (743)
96 PF05088 Bac_GDH: Bacterial NA 88.4 3.2 6.8E-05 48.0 10.6 74 231-305 488-566 (1528)
97 cd04930 ACT_TH ACT domain of t 88.2 3.1 6.8E-05 34.3 7.9 50 233-282 42-92 (115)
98 KOG3558 Hypoxia-inducible fact 88.2 0.55 1.2E-05 49.4 4.1 47 107-153 48-96 (768)
99 KOG3559 Transcriptional regula 87.8 0.47 1E-05 47.1 3.2 43 112-154 8-52 (598)
100 COG4492 PheB ACT domain-contai 87.6 3.2 7E-05 35.3 7.6 65 232-298 72-137 (150)
101 KOG4395 Transcription factor A 87.0 1.1 2.4E-05 41.9 4.9 56 105-160 174-230 (285)
102 PRK11092 bifunctional (p)ppGpp 86.6 2 4.2E-05 46.0 7.3 52 232-283 626-678 (702)
103 TIGR00691 spoT_relA (p)ppGpp s 86.4 2 4.4E-05 45.7 7.3 53 232-284 610-663 (683)
104 PRK08178 acetolactate synthase 86.1 4.1 8.9E-05 32.7 7.2 68 231-301 7-74 (96)
105 PRK11589 gcvR glycine cleavage 85.7 2.6 5.6E-05 37.8 6.6 66 231-300 7-72 (190)
106 COG3830 ACT domain-containing 85.5 1.7 3.7E-05 34.5 4.6 71 232-304 3-73 (90)
107 KOG4447 Transcription factor T 85.2 1.2 2.7E-05 38.5 4.1 46 112-157 29-74 (173)
108 COG0788 PurU Formyltetrahydrof 84.8 5.5 0.00012 37.8 8.4 71 231-303 6-78 (287)
109 cd04906 ACT_ThrD-I_1 First of 84.7 7.9 0.00017 29.6 8.1 62 233-298 2-64 (85)
110 cd04902 ACT_3PGDH-xct C-termin 82.5 3.7 7.9E-05 29.6 5.2 45 235-279 2-48 (73)
111 PRK08198 threonine dehydratase 82.4 7.5 0.00016 38.4 9.0 66 230-298 325-395 (404)
112 cd04922 ACT_AKi-HSDH-ThrA_2 AC 80.6 12 0.00025 26.3 7.2 59 234-300 3-64 (66)
113 PRK00227 glnD PII uridylyl-tra 79.0 11 0.00025 40.2 9.4 69 230-300 544-613 (693)
114 PRK06382 threonine dehydratase 79.0 10 0.00022 37.7 8.5 66 230-298 328-398 (406)
115 cd04937 ACT_AKi-DapG-BS_2 ACT 78.2 16 0.00034 26.1 7.3 50 241-300 13-62 (64)
116 TIGR01127 ilvA_1Cterm threonin 78.0 11 0.00025 36.7 8.5 66 230-298 303-373 (380)
117 cd04919 ACT_AK-Hom3_2 ACT doma 76.3 19 0.00042 25.3 7.3 52 241-300 13-64 (66)
118 cd04933 ACT_AK1-AT_1 ACT domai 75.8 25 0.00054 26.8 8.1 66 234-306 3-71 (78)
119 PRK11899 prephenate dehydratas 74.8 21 0.00045 33.9 9.0 65 232-299 194-259 (279)
120 PRK08526 threonine dehydratase 74.0 18 0.00039 36.0 8.8 66 230-298 324-394 (403)
121 KOG4005 Transcription factor X 73.7 13 0.00028 34.7 6.9 20 107-126 61-81 (292)
122 cd04918 ACT_AK1-AT_2 ACT domai 72.1 16 0.00035 26.3 6.0 52 241-300 12-63 (65)
123 cd04892 ACT_AK-like_2 ACT doma 71.4 26 0.00056 23.7 6.8 34 234-267 2-38 (65)
124 cd04916 ACT_AKiii-YclM-BS_2 AC 70.7 31 0.00068 24.0 7.3 58 235-300 4-64 (66)
125 PF02120 Flg_hook: Flagellar h 70.6 19 0.00041 27.0 6.4 47 222-268 27-79 (85)
126 COG4747 ACT domain-containing 69.6 29 0.00063 29.2 7.5 39 234-272 5-43 (142)
127 KOG3582 Mlx interactors and re 69.6 3 6.5E-05 44.1 2.1 67 104-170 650-719 (856)
128 COG2061 ACT-domain-containing 68.5 18 0.00039 31.6 6.3 49 233-281 6-57 (170)
129 PLN02705 beta-amylase 68.5 17 0.00036 38.3 7.2 25 106-130 85-109 (681)
130 cd04890 ACT_AK-like_1 ACT doma 67.0 40 0.00087 23.5 7.8 25 241-265 12-36 (62)
131 COG0317 SpoT Guanosine polypho 66.8 16 0.00034 39.2 6.8 62 222-283 612-679 (701)
132 cd04915 ACT_AK-Ectoine_2 ACT d 66.5 20 0.00044 26.0 5.6 51 242-300 14-64 (66)
133 cd04924 ACT_AK-Arch_2 ACT doma 65.3 43 0.00094 23.2 7.2 59 234-300 3-64 (66)
134 PF13840 ACT_7: ACT domain ; P 63.9 29 0.00064 25.1 6.0 33 232-264 6-42 (65)
135 cd04932 ACT_AKiii-LysC-EC_1 AC 62.9 62 0.0014 24.2 8.3 56 240-302 12-67 (75)
136 COG0077 PheA Prephenate dehydr 61.4 46 0.001 31.7 8.3 66 232-300 194-260 (279)
137 PRK10622 pheA bifunctional cho 59.7 54 0.0012 32.6 8.8 64 233-299 298-362 (386)
138 PRK11898 prephenate dehydratas 58.7 37 0.0008 32.2 7.2 64 233-299 197-262 (283)
139 cd04934 ACT_AK-Hom3_1 CT domai 57.1 71 0.0015 23.8 7.2 32 234-265 3-37 (73)
140 PRK15385 magnesium transport p 56.4 1E+02 0.0022 28.6 9.3 48 232-279 142-193 (225)
141 cd04868 ACT_AK-like ACT domain 55.7 47 0.001 21.8 5.6 26 242-267 13-38 (60)
142 COG0440 IlvH Acetolactate synt 53.7 42 0.00092 29.5 6.1 66 234-303 6-73 (163)
143 PF02344 Myc-LZ: Myc leucine z 53.4 15 0.00032 23.5 2.4 17 113-129 13-29 (32)
144 PRK08639 threonine dehydratase 52.2 72 0.0016 31.8 8.4 66 230-298 334-401 (420)
145 TIGR01268 Phe4hydrox_tetr phen 50.8 62 0.0014 32.8 7.6 50 233-282 17-67 (436)
146 cd04923 ACT_AK-LysC-DapG-like_ 50.3 78 0.0017 21.5 6.7 25 241-265 12-36 (63)
147 TIGR02079 THD1 threonine dehyd 49.6 88 0.0019 31.1 8.5 66 230-298 323-390 (409)
148 cd04936 ACT_AKii-LysC-BS-like_ 48.0 86 0.0019 21.3 6.7 25 241-265 12-36 (63)
149 TIGR01270 Trp_5_monoox tryptop 47.8 73 0.0016 32.6 7.6 50 233-282 32-83 (464)
150 cd04912 ACT_AKiii-LysC-EC-like 47.8 1.1E+02 0.0024 22.5 7.8 25 240-264 12-36 (75)
151 cd04935 ACT_AKiii-DAPDC_1 ACT 47.6 1.2E+02 0.0025 22.7 7.4 25 241-265 13-37 (75)
152 PRK12483 threonine dehydratase 46.7 1.3E+02 0.0028 31.2 9.4 64 230-297 343-407 (521)
153 TIGR00656 asp_kin_monofn aspar 45.4 1.2E+02 0.0025 29.9 8.6 66 227-300 255-323 (401)
154 COG3978 Acetolactate synthase 45.4 1.4E+02 0.0031 23.3 7.1 62 234-300 5-68 (86)
155 PRK06291 aspartate kinase; Pro 44.7 1.2E+02 0.0025 30.8 8.6 67 226-300 392-461 (465)
156 cd04920 ACT_AKiii-DAPDC_2 ACT 44.5 1.1E+02 0.0025 21.7 6.9 50 241-300 12-61 (63)
157 PLN02317 arogenate dehydratase 43.2 1.5E+02 0.0032 29.6 8.8 50 233-282 284-348 (382)
158 PRK00227 glnD PII uridylyl-tra 43.1 39 0.00084 36.3 5.1 59 233-300 632-690 (693)
159 PRK09224 threonine dehydratase 42.9 1.7E+02 0.0036 30.1 9.5 65 230-298 326-391 (504)
160 PLN02551 aspartokinase 42.2 1.4E+02 0.0029 31.0 8.8 66 228-301 441-508 (521)
161 cd04921 ACT_AKi-HSDH-ThrA-like 41.0 1.4E+02 0.003 21.7 7.0 28 241-268 13-40 (80)
162 PRK09034 aspartate kinase; Rev 40.7 1.2E+02 0.0026 30.6 8.0 67 226-300 379-448 (454)
163 COG2716 GcvR Glycine cleavage 40.1 1.2E+02 0.0025 27.1 6.8 71 233-306 93-169 (176)
164 cd04911 ACT_AKiii-YclM-BS_1 AC 39.7 56 0.0012 25.0 4.2 52 242-306 14-66 (76)
165 PRK00907 hypothetical protein; 38.8 1.1E+02 0.0023 24.4 5.8 63 232-297 17-83 (92)
166 TIGR01124 ilvA_2Cterm threonin 38.8 1.9E+02 0.0041 29.8 9.1 63 230-297 323-386 (499)
167 cd04913 ACT_AKii-LysC-BS-like_ 38.6 1.3E+02 0.0029 20.8 6.5 27 240-266 10-36 (75)
168 PRK08210 aspartate kinase I; R 38.6 1.5E+02 0.0033 29.1 8.3 66 225-300 332-400 (403)
169 PRK07431 aspartate kinase; Pro 38.5 1.5E+02 0.0032 30.9 8.5 66 225-300 341-409 (587)
170 COG2716 GcvR Glycine cleavage 38.3 28 0.00061 30.9 2.6 62 232-297 5-66 (176)
171 TIGR00656 asp_kin_monofn aspar 37.7 1.8E+02 0.0038 28.6 8.5 62 229-300 334-398 (401)
172 cd04871 ACT_PSP_2 ACT domains 37.0 31 0.00067 26.5 2.5 71 235-309 2-82 (84)
173 PRK09436 thrA bifunctional asp 36.7 1.8E+02 0.004 31.8 9.1 67 226-300 390-459 (819)
174 PRK06291 aspartate kinase; Pro 33.7 2.2E+02 0.0048 28.8 8.7 41 229-269 318-361 (465)
175 PF06005 DUF904: Protein of un 32.7 80 0.0017 23.9 4.0 25 145-169 13-37 (72)
176 cd04898 ACT_ACR-like_4 ACT dom 32.6 1.2E+02 0.0025 23.5 4.8 48 236-283 4-53 (77)
177 PLN02551 aspartokinase 31.7 2E+02 0.0043 29.9 8.0 35 230-264 364-401 (521)
178 PRK06635 aspartate kinase; Rev 30.8 2.1E+02 0.0045 28.1 7.8 39 226-264 334-375 (404)
179 cd04907 ACT_ThrD-I_2 Second of 30.7 2.4E+02 0.0052 21.4 7.3 59 233-298 2-63 (81)
180 PRK02047 hypothetical protein; 29.3 1.8E+02 0.0039 22.8 5.7 62 233-297 17-82 (91)
181 PLN02550 threonine dehydratase 29.1 2.6E+02 0.0055 29.6 8.4 48 232-281 417-465 (591)
182 PF01709 Transcrip_reg: Transc 28.8 2.8E+02 0.0061 25.6 7.8 57 234-305 166-222 (234)
183 smart00338 BRLZ basic region l 28.4 74 0.0016 22.9 3.2 22 149-170 25-46 (65)
184 COG4710 Predicted DNA-binding 28.4 1.1E+02 0.0023 23.5 4.0 32 120-157 16-48 (80)
185 PRK06635 aspartate kinase; Rev 28.3 2.1E+02 0.0046 28.0 7.3 51 228-278 258-310 (404)
186 PF00170 bZIP_1: bZIP transcri 27.9 82 0.0018 22.7 3.3 19 150-168 26-44 (64)
187 PRK14637 hypothetical protein; 27.7 2.8E+02 0.0061 23.8 7.1 57 242-301 7-66 (151)
188 PF14689 SPOB_a: Sensor_kinase 27.7 1.5E+02 0.0033 21.3 4.7 40 114-162 17-56 (62)
189 TIGR01213 conserved hypothetic 27.5 1.3E+02 0.0028 30.1 5.6 83 220-305 210-308 (388)
190 COG3074 Uncharacterized protei 26.9 1E+02 0.0023 23.4 3.7 26 145-170 13-38 (79)
191 PRK08818 prephenate dehydrogen 26.8 2.4E+02 0.0052 27.9 7.3 48 235-283 298-346 (370)
192 PRK00341 hypothetical protein; 26.6 1.8E+02 0.0039 22.9 5.2 61 233-297 18-82 (91)
193 PF01545 Cation_efflux: Cation 26.5 3E+02 0.0066 25.1 7.7 57 244-300 205-264 (284)
194 PF14992 TMCO5: TMCO5 family 25.6 91 0.002 29.8 4.0 27 143-169 144-170 (280)
195 COG1707 ACT domain-containing 25.6 3.4E+02 0.0073 24.4 7.2 35 234-268 4-38 (218)
196 PRK08841 aspartate kinase; Val 25.5 2.4E+02 0.0053 27.9 7.2 65 229-303 315-379 (392)
197 COG0527 LysC Aspartokinases [A 25.3 4.4E+02 0.0096 26.8 9.1 67 225-301 376-445 (447)
198 cd04917 ACT_AKiii-LysC-EC_2 AC 25.2 2.4E+02 0.0053 19.6 7.3 50 241-300 13-62 (64)
199 cd04891 ACT_AK-LysC-DapG-like_ 25.1 2.1E+02 0.0045 18.8 5.4 27 240-266 9-35 (61)
200 PF09849 DUF2076: Uncharacteri 24.6 1.9E+02 0.0041 27.1 5.8 51 117-169 6-74 (247)
201 PRK11191 RNase E inhibitor pro 24.6 2.5E+02 0.0054 24.0 6.1 57 242-301 42-99 (138)
202 PRK14639 hypothetical protein; 24.3 2.6E+02 0.0056 23.7 6.2 50 249-301 3-55 (140)
203 PTZ00324 glutamate dehydrogena 23.6 5.1E+02 0.011 29.3 9.7 64 221-284 216-286 (1002)
204 PF09006 Surfac_D-trimer: Lung 23.2 1.1E+02 0.0024 21.3 3.0 19 152-170 1-19 (46)
205 TIGR00657 asp_kinases aspartat 22.9 3.7E+02 0.008 26.8 8.0 66 225-300 371-439 (441)
206 PRK04998 hypothetical protein; 22.5 2.3E+02 0.0049 22.0 5.1 62 233-297 16-79 (88)
207 PF05687 DUF822: Plant protein 22.1 1.4E+02 0.003 25.9 4.0 25 106-130 12-36 (150)
208 PRK15422 septal ring assembly 22.0 1.5E+02 0.0032 23.0 3.8 28 144-171 12-39 (79)
209 PF07687 M20_dimer: Peptidase 21.9 2.8E+02 0.0061 21.0 5.7 58 245-305 32-109 (111)
210 PRK07431 aspartate kinase; Pro 21.4 4.4E+02 0.0096 27.4 8.5 64 227-300 514-580 (587)
211 PF12344 UvrB: Ultra-violet re 21.1 1.5E+02 0.0032 20.5 3.2 29 106-134 9-37 (44)
212 PRK06349 homoserine dehydrogen 20.9 5E+02 0.011 25.9 8.5 36 231-266 347-382 (426)
213 PRK11790 D-3-phosphoglycerate 20.3 1.4E+02 0.003 29.8 4.3 62 231-298 337-398 (409)
214 PRK10820 DNA-binding transcrip 20.1 1.5E+02 0.0032 30.5 4.6 36 234-269 2-37 (520)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.44 E-value=1.4e-13 Score=98.67 Aligned_cols=52 Identities=35% Similarity=0.573 Sum_probs=48.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCCcchhHhHHHHHHHHHH
Q 043618 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPS---YVQRGDQASIVGGAINYVKELE 156 (310)
Q Consensus 105 ~r~~h~~~ER~RR~~~n~~~~~LrslvP~~---~~~k~dkasil~~Ai~YIk~Lq 156 (310)
+|..|+..||+||++||+.|..|+.+||.. ...+.+|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 478899999999999999999999999995 4578999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.40 E-value=5.1e-13 Score=96.68 Aligned_cols=57 Identities=35% Similarity=0.585 Sum_probs=51.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCcchhHhHHHHHHHHHHHHHH
Q 043618 104 SQRMTHIFVERNRRKQMKNYLSVLRSLMPPSY-VQRGDQASIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 104 ~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~-~~k~dkasil~~Ai~YIk~Lq~~v~ 160 (310)
..+..|+..||+||++||+.|..|+++||... ..++||++||..||+||+.|+.+++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999943 3789999999999999999998763
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.33 E-value=2.2e-12 Score=91.40 Aligned_cols=51 Identities=33% Similarity=0.466 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCcchhHhHHHHHHHHHHHHHH
Q 043618 110 IFVERNRRKQMKNYLSVLRSLMPPSY-VQRGDQASIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 110 ~~~ER~RR~~~n~~~~~LrslvP~~~-~~k~dkasil~~Ai~YIk~Lq~~v~ 160 (310)
+..||+||++||+.|..|+++||... ..+.+|++||..||+||++|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999742 5789999999999999999999876
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.02 E-value=1.3e-09 Score=106.65 Aligned_cols=62 Identities=27% Similarity=0.477 Sum_probs=52.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCcchhHhHHHHHHHHHHHHHHH
Q 043618 100 EEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSY--VQRGDQASIVGGAINYVKELEQLVQT 161 (310)
Q Consensus 100 ~e~~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~--~~k~dkasil~~Ai~YIk~Lq~~v~~ 161 (310)
+....+|..|+.+|||||++||+++..|-.|||.+- ..+..|..||..+++||++|++..++
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 344566899999999999999999999999999831 12566999999999999999987773
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.69 E-value=2.5e-08 Score=87.72 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=57.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043618 104 SQRMTHIFVERNRRKQMKNYLSVLRSLMPPSY-----VQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHIL 171 (310)
Q Consensus 104 ~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~-----~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~~~ 171 (310)
.+|.+|.-.||+||+-||..+..|+.|||... ..|..||-||..+|+||.+|.++...-+.+...+..
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44889999999999999999999999999831 236778999999999999999988887777666553
No 6
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.59 E-value=6.5e-07 Score=68.57 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=60.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCH---HHHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSM---NEVAAAVYDMMGR 302 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~---eeI~~aL~eil~~ 302 (310)
.|+|.|+.|||+|.+|..+|-.++++|.+|.|+|.++.+..+|.++=.++.++.+. ++|+++|.+++.|
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999998888877654 3466777776654
No 7
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.50 E-value=2.1e-07 Score=85.21 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=57.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 043618 103 ESQRMTHIFVERNRRKQMKNYLSVL-RSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIH 169 (310)
Q Consensus 103 ~~~r~~h~~~ER~RR~~~n~~~~~L-rslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~ 169 (310)
..+|..-.+.||||=+|+||.|.+| |.-.+++ .++.-|+.||..||+||..||..++++.+....+
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNP-NQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3457788899999999999999999 6677775 6899999999999999999999999988766554
No 8
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.35 E-value=5.1e-06 Score=63.18 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=50.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCC
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRS 288 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s 288 (310)
.|+|.+++|||+|.+|..+|..+||+|..|.|+|.++.+..+|.+.=.++.++.+
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d 57 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTD 57 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCC
Confidence 6899999999999999999999999999999999999999999998777776643
No 9
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.34 E-value=3.6e-07 Score=85.01 Aligned_cols=59 Identities=20% Similarity=0.410 Sum_probs=50.4
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC------CCCCCcchhHhHHHHHHHHHHHHHH
Q 043618 102 VESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSY------VQRGDQASIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 102 ~~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~------~~k~dkasil~~Ai~YIk~Lq~~v~ 160 (310)
...+++.|-..||+||.+||+.|..|+.|||... ..|++|+.||+-|++|++.|+....
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3445788889999999999999999999999721 2578999999999999999986544
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.30 E-value=2.4e-06 Score=78.52 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=51.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-cchhHhHHHHHHHHHHHHHHHHHHHHH
Q 043618 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGD-QASIVGGAINYVKELEQLVQTLEVHKR 167 (310)
Q Consensus 105 ~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~d-kasil~~Ai~YIk~Lq~~v~~L~~~~~ 167 (310)
.|..||.-||+||..|++.|..|+.+||.....+.. .++||..|+.||+.|+.+.......++
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e 122 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE 122 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 378899999999999999999999999984323333 588999999999999877666554443
No 11
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=9e-06 Score=62.30 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=55.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEE--EeCCEEEEEEEEEecCCcccCC---HHHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVA--TFDNQVLYTFSVKVEEGCHLRS---MNEVAAAVYDMMG 301 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vs--t~~~~vl~s~~~kv~~~~~l~s---~eeI~~aL~eil~ 301 (310)
.|.|.|++|||+|.+|..+|..++|+|..|.|+ |.+.++..+|.+ -.++.++.+ .+.|+++|.+.+.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999 999999999999 344545544 3456667766653
No 12
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=9.6e-06 Score=61.89 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=53.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEE-eCCEEEEEEEEEecCCcccCC---HHHHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT-FDNQVLYTFSVKVEEGCHLRS---MNEVAAAVYDMMG 301 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst-~~~~vl~s~~~kv~~~~~l~s---~eeI~~aL~eil~ 301 (310)
+.|+|.|++|||+|.++..+|..+||+|+.|.|++ .++.++.+|.+.-.++. ..+ .++|.++|.+.+.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLG 72 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999996 79999999999743332 222 2335555555543
No 13
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.21 E-value=1.1e-06 Score=82.59 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=50.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHH
Q 043618 106 RMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTL 162 (310)
Q Consensus 106 r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L 162 (310)
|..-|.-||||=.-||..|..||+|+|.-...|..||.||..+.+||.+|+.+.-+|
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 556777899999999999999999999865678899999999999999999766555
No 14
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.17 E-value=3.4e-05 Score=58.01 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=46.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-CCEEEEEEEEEecCCccc
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-DNQVLYTFSVKVEEGCHL 286 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-~~~vl~s~~~kv~~~~~l 286 (310)
.|.|.|+++||+|.+|..+|..+||+|+.|.|.+. ++.++.+|.+.-.++..+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~ 56 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPI 56 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCC
Confidence 57899999999999999999999999999999877 689999999985555444
No 15
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.15 E-value=2e-06 Score=90.72 Aligned_cols=53 Identities=21% Similarity=0.454 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCcchhHhHHHHHHHHHHHH
Q 043618 106 RMTHIFVERNRRKQMKNYLSVLRSLMPPS--YVQRGDQASIVGGAINYVKELEQL 158 (310)
Q Consensus 106 r~~h~~~ER~RR~~~n~~~~~LrslvP~~--~~~k~dkasil~~Ai~YIk~Lq~~ 158 (310)
|..|+.+|||||++||.++.+|.+|||.. ...|+||..||.+||.+|+.++..
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999984 137999999999999999999874
No 16
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.06 E-value=3.6e-06 Score=89.24 Aligned_cols=66 Identities=20% Similarity=0.420 Sum_probs=58.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 043618 103 ESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIH 169 (310)
Q Consensus 103 ~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~ 169 (310)
..+|.+||.+|||.|..||+++..|+.+||.. ..|..|..+|..||+||++|+...+.|+.+...+
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l 339 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGT-EAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL 339 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCcc-HhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence 35699999999999999999999999999985 5688999999999999999998888877655443
No 17
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.03 E-value=8.4e-05 Score=56.24 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=52.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecC-CcccCC---HHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEE-GCHLRS---MNEVAAAVYDMM 300 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~-~~~l~s---~eeI~~aL~eil 300 (310)
.|+|.+++|||+|.+|..+|..+|+.|+.+.+.+.++.++.+|.+.-.+ +..+.+ .+.|+++|.+++
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999887443 433322 234444544443
No 18
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.97 E-value=2.2e-05 Score=72.01 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=55.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCcchhHhHHHHHHHHHHHHHHHHHHHH
Q 043618 103 ESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSY--VQRGDQASIVGGAINYVKELEQLVQTLEVHK 166 (310)
Q Consensus 103 ~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~--~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~ 166 (310)
..++..++..||+|=+.+|..|..||.+||... .+|..|..+|..||.||+.|++-++.-+...
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 445788899999999999999999999999854 4688999999999999999999888766443
No 19
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.77 E-value=0.00051 Score=50.36 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=47.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcc
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCH 285 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~ 285 (310)
.|.|.++.+||+|.+|+.+|.+++++|+++++.+.++.++..|.+.-.++..
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~ 53 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP 53 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc
Confidence 5789999999999999999999999999999999888899999998766654
No 20
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.76 E-value=0.00034 Score=52.61 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=52.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEE-eCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT-FDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst-~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.|-|.++.+||+|.+|..+|..+||+|+.+.+.+ .+|.++.+|.+.-.++. ..+++..+|.+.+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~---~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG---ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc---chHHHHHHHHHhh
Confidence 5778999999999999999999999999999975 58899999999854442 3567777776654
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.69 E-value=0.00054 Score=51.43 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=51.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
.|.|.++.++|+|.+|..+|.+++++|+++.+.+.++.++.+|.+.-.++... +. +..++|.+.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~-~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DP-KTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CH-HHHHHHHHHhc
Confidence 57788999999999999999999999999999988888889998875444433 33 33344555443
No 22
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.53 E-value=0.00018 Score=55.89 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCCCCC-CCCCcch---hHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043618 118 KQMKNYLSVLRSLMPPSYV-QRGDQAS---IVGGAINYVKELEQLVQTLEVHKRIHIL 171 (310)
Q Consensus 118 ~~~n~~~~~LrslvP~~~~-~k~dkas---il~~Ai~YIk~Lq~~v~~L~~~~~~~~~ 171 (310)
++|++.+..|+.|+|.... ...+|++ +|.++++||+.|.++|..|-++..++..
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999999998422 2234544 8999999999999999999999988763
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=97.50 E-value=0.00013 Score=62.61 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=57.1
Q ss_pred CCChHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHH
Q 043618 96 VKNIEEVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 96 ~~~~~e~~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~ 160 (310)
...-+|..+|+.-|++.||+|-..+|+.|..||.++|.....|..|.-.|.-|..||..|-+-++
T Consensus 69 ~~~~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 69 IQSLDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 34557888999999999999999999999999999998656788888899999999999976544
No 24
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.48 E-value=0.0013 Score=49.90 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=55.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHh
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRV 303 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i 303 (310)
++.|.|.+++|||++..|..+|.++|.+|+.++.++.++.+...+.+.+.+. +.++|+.+|.++..+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l~~~~ 69 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEELAEEL 69 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999999999999998877777777632 4677888888776554
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.16 E-value=0.0048 Score=44.14 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=45.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDM 299 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~ei 299 (310)
.|.|.|+++||+|.+|...|-++++.|.++.+.+..+...+.+.+...+.. ..+.+.++|+++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEE---DLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGH---GHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCC---CHHHHHHHHHcc
Confidence 578999999999999999999999999999999887621122222222221 356666766654
No 26
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.14 E-value=0.0029 Score=68.74 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=60.1
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCC--HHHHHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRS--MNEVAAAVYDMMGR 302 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s--~eeI~~aL~eil~~ 302 (310)
+....|+|.+.+|||+|.+|..+|.++||+|.+|.|+|.++.+..+|.+.-.++..+.. .++|+++|...+..
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 34579999999999999999999999999999999999999999999998666655521 24566666666643
No 27
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.14 E-value=0.0034 Score=68.27 Aligned_cols=83 Identities=13% Similarity=0.233 Sum_probs=66.1
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCC---HHHHHHHH
Q 043618 222 ADIEVTMA--ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRS---MNEVAAAV 296 (310)
Q Consensus 222 ~~VeV~~~--e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s---~eeI~~aL 296 (310)
+.|.+.-. .+...|.|.+..|||+|.+|..+|..+||+|+.|.|+|.+++++.+|.+.-.++..+.+ .++|+++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 45554432 34569999999999999999999999999999999999999999999998666665544 34577788
Q ss_pred HHHHHHhh
Q 043618 297 YDMMGRVQ 304 (310)
Q Consensus 297 ~eil~~i~ 304 (310)
.+++..-+
T Consensus 882 ~~~L~~~~ 889 (895)
T PRK00275 882 CEQLDARN 889 (895)
T ss_pred HHHHhccc
Confidence 77775443
No 28
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.14 E-value=0.0082 Score=43.43 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=44.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCc
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGC 284 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~ 284 (310)
.|.|.|+.+||+|.+|+.+|.++++.|.++.+.+.++.....|.+.-.++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~ 52 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGR 52 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCC
Confidence 578899999999999999999999999999999887777788888755543
No 29
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.12 E-value=0.0071 Score=45.63 Aligned_cols=69 Identities=6% Similarity=0.209 Sum_probs=55.3
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC------CEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhhh
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD------NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQGE 306 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~------~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~~ 306 (310)
|.|.|+.+||++.+|-..|.++|++|..++..+.+ +.+...+.+.+..+ .+.+++.++|..+-.++.-+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~---~~~~~l~~~l~~l~~~~~~~ 76 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG---TDLDALREELEELCDDLNVD 76 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC---CCHHHHHHHHHHHHHHhcce
Confidence 68999999999999999999999999999998877 55555666666542 25788998888877665433
No 30
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.10 E-value=0.0018 Score=49.06 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=44.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCC
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEG 283 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~ 283 (310)
.+.|+|.+.+++|+|.+|..+|-+.++.|.++++... ++.+...|.+++.+-
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~ 59 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL 59 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH
Confidence 3688999999999999999999999999999999984 678888999998653
No 31
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.09 E-value=0.0078 Score=45.74 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=55.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGR 302 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~ 302 (310)
+.|.+.|+.+||+..+|-..|-++|..|+.++....++.++..+.+.++. .+.++|.+++..+-.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~----~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW----DAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc----ccHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999998877766666652 2577888888776554
No 32
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.08 E-value=0.0041 Score=67.89 Aligned_cols=83 Identities=13% Similarity=0.252 Sum_probs=66.6
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCH---HHHHHHH
Q 043618 222 ADIEVTMA--ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSM---NEVAAAV 296 (310)
Q Consensus 222 ~~VeV~~~--e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~---eeI~~aL 296 (310)
+.|.+.-. ++...|.|.+.++||+|.+|..+|.++||+|..+.|.|.++.++.+|.+.-.++..+.+. ++|+++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 45555432 335799999999999999999999999999999999999999999999987666655443 5677888
Q ss_pred HHHHHHhh
Q 043618 297 YDMMGRVQ 304 (310)
Q Consensus 297 ~eil~~i~ 304 (310)
.+++..-.
T Consensus 911 ~~~L~~~~ 918 (931)
T PRK05092 911 LAALAEGE 918 (931)
T ss_pred HHHhcCcc
Confidence 88875433
No 33
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.94 E-value=0.0065 Score=65.90 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=62.9
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCC--HHHHHHHHH
Q 043618 222 ADIEVTMA--ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRS--MNEVAAAVY 297 (310)
Q Consensus 222 ~~VeV~~~--e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s--~eeI~~aL~ 297 (310)
+.|.+.-. ++...|.|.+..+||+|.+|..+|..++|+|+.|.|+|.+++++.+|.+.-.++..+.+ .++|+++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 45555432 23569999999999999999999999999999999999999999999998655554432 245666666
Q ss_pred HHHH
Q 043618 298 DMMG 301 (310)
Q Consensus 298 eil~ 301 (310)
+.+.
T Consensus 864 ~~l~ 867 (869)
T PRK04374 864 ACLD 867 (869)
T ss_pred HHhc
Confidence 6553
No 34
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.88 E-value=0.0051 Score=47.73 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=57.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
+.|.+.|+++||++.+|...|-++|++|++++..+.++.+...+.+.+.. ... +++++.++|..+-.++.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~~-~~~~L~~~l~~l~~~~~ 71 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SNL-DFAELQEELEELGKELG 71 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CCC-CHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999988888766666666653 122 57888888888776654
No 35
>PRK00194 hypothetical protein; Validated
Probab=96.88 E-value=0.0059 Score=47.36 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=56.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
.+.|.|.|+++||++.+|...|-++|++|++.+..+.++.+...+.+.... ... +++++.+.|.++-.++.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~l~~~l~~l~~~~~ 73 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SKK-DFAELKEELEELGKELG 73 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CCC-CHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999988777666666666543 122 47788888877665544
No 36
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.87 E-value=0.006 Score=66.06 Aligned_cols=70 Identities=13% Similarity=0.245 Sum_probs=57.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCH--HHHHHHHHHHH
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSM--NEVAAAVYDMM 300 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~--eeI~~aL~eil 300 (310)
....|+|.+.+|||+|.+|..+|.++||+|..|.|+|.++++..+|.+.-.++..+.+. ++|+++|.+.+
T Consensus 782 ~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 34799999999999999999999999999999999999999999999986666655322 34555555443
No 37
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83 E-value=0.013 Score=43.69 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=49.5
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHh
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRV 303 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i 303 (310)
|.|.|+.+||++.+|...|-++|+.|++++..+....-++.+.+++.-.....+.+++.++|..+-.++
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l 70 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEF 70 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999999886322222333344332221125788888888776554
No 38
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.0097 Score=43.99 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=43.4
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-CCEEEEEEEEEecCCcc
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-DNQVLYTFSVKVEEGCH 285 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-~~~vl~s~~~kv~~~~~ 285 (310)
|+|.+..+||+|.+|+.+|.+.|..|.++++... ++.+...|.+++.+..+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~ 53 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEH 53 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHH
Confidence 7888999999999999999999999999998776 46777778888766543
No 39
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.63 E-value=0.021 Score=42.94 Aligned_cols=67 Identities=9% Similarity=0.150 Sum_probs=55.7
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
|.|..+.|||++.++.++|-+++++|..++.++.++.+...+.+.+..+ .+.+++.++|..+..++.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~---~~~~~l~~~l~~l~~~l~ 68 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS---ADSEALLKDLLFKAHELG 68 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC---CCHHHHHHHHHHHHHHcC
Confidence 6788999999999999999999999999998888887666777776554 257888888888776643
No 40
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.57 E-value=0.016 Score=62.65 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=59.3
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEE-EeCCEEEEEEEEEecCCcccCC---HHHHHHHHHHHHHH
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVA-TFDNQVLYTFSVKVEEGCHLRS---MNEVAAAVYDMMGR 302 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vs-t~~~~vl~s~~~kv~~~~~l~s---~eeI~~aL~eil~~ 302 (310)
+...|.|.++++||+|.+|..+|..+||+|+.|.|. +.++.++.+|.++-.++..+.+ .+.|.++|.+++..
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 456899999999999999999999999999999998 6789999999999777665543 23466666666643
No 41
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.49 E-value=0.013 Score=63.55 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=46.3
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEE
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVK 279 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~k 279 (310)
+...|.|.++.|||+|.+|..+|..++|+|+.|.|+|.++.++.+|.+.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence 4569999999999999999999999999999999999999999999994
No 42
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.48 E-value=0.017 Score=62.47 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCC--HHHHHHHHHHH
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRS--MNEVAAAVYDM 299 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s--~eeI~~aL~ei 299 (310)
....|.|.|.+|||+|.+|..+|..+|++|.++.|+|.++.+...|.+....+..+.+ .++|+++|.+.
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~ 848 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAAS 848 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999998777665542 23344444443
No 43
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.46 E-value=0.021 Score=61.33 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=60.7
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGR 302 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~ 302 (310)
.+.+.|.|.|+.|||++.+|..+|..+|++|+.+.|.+.+|.++.+|.+.-.++... ..++|+++|.+++..
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~-~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP-DAALLRQDLRRALDG 668 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc-hHHHHHHHHHHHHcC
Confidence 355799999999999999999999999999999999998999999999986555433 357788888777653
No 44
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.34 E-value=0.023 Score=61.04 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=52.0
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccC
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLR 287 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~ 287 (310)
+...|.|.++.+||+|.+|..+|..++++|+.+.|+|.++.++.+|.+.-.++..+.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~ 762 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA 762 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc
Confidence 357999999999999999999999999999999999999999999999877676653
No 45
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.23 E-value=0.024 Score=40.73 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=38.5
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-----CCEEEEEEEEEecC
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-----DNQVLYTFSVKVEE 282 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-----~~~vl~s~~~kv~~ 282 (310)
|.|.++.+||.|.+|+..|.+.+++|.+.+.... .+.....|++.+.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~ 53 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG 53 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC
Confidence 4578899999999999999999999999887654 35566667776643
No 46
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.19 E-value=0.0056 Score=61.43 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=48.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCC-C-CCCCCcchhHhHHHHHHHHHHHHHHHH
Q 043618 104 SQRMTHIFVERNRRKQMKNYLSVLRSLMPPS-Y-VQRGDQASIVGGAINYVKELEQLVQTL 162 (310)
Q Consensus 104 ~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~-~-~~k~dkasil~~Ai~YIk~Lq~~v~~L 162 (310)
++|+..|+.||-|-..|||.|.+|-.+.--- . .+.-.|.-||..|+.-|-.|+|||.+-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 5699999999999999999999996665320 0 123367889999999999999999864
No 47
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.08 E-value=0.05 Score=59.09 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=60.3
Q ss_pred ceEEEEE--eCCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEE-eCCEEEEEEEEEecCCcccCCHH---HHHHH
Q 043618 222 ADIEVTM--AESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT-FDNQVLYTFSVKVEEGCHLRSMN---EVAAA 295 (310)
Q Consensus 222 ~~VeV~~--~e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst-~~~~vl~s~~~kv~~~~~l~s~e---eI~~a 295 (310)
+.|.+.- ..+...|.|.++.+||+|.+|..+|..+||+|+.|.|.| .++.++.+|.+.-.++..+ +.+ .|.++
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~-~~~~~~~l~~~ 743 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLL-EFDRRRQLEQA 743 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCC-CHHHHHHHHHH
Confidence 4454432 334569999999999999999999999999999999976 7999999999986666555 332 35556
Q ss_pred HHHHH
Q 043618 296 VYDMM 300 (310)
Q Consensus 296 L~eil 300 (310)
|.+++
T Consensus 744 L~~aL 748 (854)
T PRK01759 744 LTKAL 748 (854)
T ss_pred HHHHH
Confidence 65555
No 48
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.07 E-value=0.031 Score=41.31 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=46.0
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-CCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-DNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
.|.|.+..+||+|.+|+..|.+++++|...+.+.. ++.....|++.+.+... ..++|..+|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~--~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNG--DIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHH--HHHHHHHHHhc
Confidence 57889999999999999999999999999987653 46666777777644320 13444444443
No 49
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.96 E-value=0.063 Score=58.54 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=57.4
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-CCEEEEEEEEEecCCcccCCH---HHHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-DNQVLYTFSVKVEEGCHLRSM---NEVAAAVYDMMG 301 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-~~~vl~s~~~kv~~~~~l~s~---eeI~~aL~eil~ 301 (310)
.+...|.|.|+++||+|.+|..+|..++|+|+.+.|.|. +|.++.+|.+.-.++..+ +. ++|.++|.+++.
T Consensus 699 ~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~-~~~~~~~I~~~L~~aL~ 773 (884)
T PRK05007 699 RGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL-SQDRHQVIRKALEQALT 773 (884)
T ss_pred CCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHc
Confidence 346799999999999999999999999999999999765 569999999986666654 33 336666666653
No 50
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.95 E-value=0.054 Score=59.11 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=56.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEE-EEeCCEEEEEEEEEecCCcccCC----HHHHHHHHHHHH
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNV-ATFDNQVLYTFSVKVEEGCHLRS----MNEVAAAVYDMM 300 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~v-st~~~~vl~s~~~kv~~~~~l~s----~eeI~~aL~eil 300 (310)
+...|.|.|+.+||+|.+|..+|..+||+|+.|.| |+.+|.++.+|.+.-.++..+.. .++|.++|.+++
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999998 55688999999998666654322 344666666665
No 51
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.031 Score=59.58 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=63.4
Q ss_pred cceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 221 VADIEVTMA--ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 221 ~~~VeV~~~--e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
.|.|.+.-. ...-.|+|.+..|||+|..|-.+|..++|+|.++.|+|+|.++..+|.+....+..+. .++.+.|.+
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~--~~~~q~l~~ 855 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALN--AELRQSLLQ 855 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCC--HHHHHHHHH
Confidence 366666533 3346999999999999999999999999999999999999999999999988887762 455555544
Q ss_pred HH
Q 043618 299 MM 300 (310)
Q Consensus 299 il 300 (310)
.+
T Consensus 856 ~l 857 (867)
T COG2844 856 RL 857 (867)
T ss_pred HH
Confidence 43
No 52
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.89 E-value=0.07 Score=58.46 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=60.1
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEE-eCCEEEEEEEEEecCCcccCC---HHHHHHH
Q 043618 222 ADIEVTMA--ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT-FDNQVLYTFSVKVEEGCHLRS---MNEVAAA 295 (310)
Q Consensus 222 ~~VeV~~~--e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst-~~~~vl~s~~~kv~~~~~l~s---~eeI~~a 295 (310)
+.|.+... .+...|.|.|+.+||+|.+|..+|..+|++|+.+.|.+ .+++++.+|.+.-.++....+ .+.|.++
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~ 799 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKA 799 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 44444432 34679999999999999999999999999999999977 688999999998665543322 3445666
Q ss_pred HHHHH
Q 043618 296 VYDMM 300 (310)
Q Consensus 296 L~eil 300 (310)
|.+++
T Consensus 800 L~~~l 804 (931)
T PRK05092 800 IEDAL 804 (931)
T ss_pred HHHHH
Confidence 66655
No 53
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.83 E-value=0.061 Score=58.44 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=54.8
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEE-EeCCEEEEEEEEEecCCcccCC---HHHHHHHHHHHH
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVA-TFDNQVLYTFSVKVEEGCHLRS---MNEVAAAVYDMM 300 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vs-t~~~~vl~s~~~kv~~~~~l~s---~eeI~~aL~eil 300 (310)
+...|.|.|+.+||+|.+|..+|..+||+|+.|.|. +.+|.++.+|.|.-.++. ... .++|.+.|.+++
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999994 578999999999855444 211 344555555554
No 54
>PRK04435 hypothetical protein; Provisional
Probab=95.76 E-value=0.06 Score=46.24 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=51.2
Q ss_pred EeCCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEE-eCCEEEEEEEEEecCCcccCCHHHHHHHHH
Q 043618 228 MAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT-FDNQVLYTFSVKVEEGCHLRSMNEVAAAVY 297 (310)
Q Consensus 228 ~~e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst-~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~ 297 (310)
..+..+.|.+.+.++||+|.+|+..|.+.+++|++.+.+. .++.+..+|++.+.+... ..++|..+|.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~--~L~~Li~~L~ 133 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEG--DIDELLEKLR 133 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHH--HHHHHHHHHH
Confidence 3466789999999999999999999999999999998765 367777788888754320 2344444444
No 55
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.45 E-value=0.087 Score=57.33 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=56.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEE-eCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT-FDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst-~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
+...|.|.|+.+||+|.+|..+|..+||+|+.|.|.+ .+|.++.+|.+.-.++......+.|.++|.+++.
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLA 760 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHc
Confidence 4579999999999999999999999999999999986 6899999999975554322223446666666553
No 56
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.29 E-value=0.11 Score=38.77 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=39.0
Q ss_pred EEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCC-EEEEEEEEEecCC
Q 043618 236 KILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTFSVKVEEG 283 (310)
Q Consensus 236 kI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl~s~~~kv~~~ 283 (310)
-+..+++||.|.+++..|.++|+.+++.......+ ..-|.|.+.++..
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~ 51 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGH 51 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECC
Confidence 34556799999999999999999999998777654 5568888887653
No 57
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=95.29 E-value=0.023 Score=53.15 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=49.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCCcchhHhHHHHHHHHHHHHH
Q 043618 103 ESQRMTHIFVERNRRKQMKNYLSVLRSLMPP-SYVQRGDQASIVGGAINYVKELEQLV 159 (310)
Q Consensus 103 ~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~-~~~~k~dkasil~~Ai~YIk~Lq~~v 159 (310)
...|..-|..||+|=-.+|+.|..||.++|. ....|+.|+..|.-|-+||..|++-.
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 3458889999999999999999999999994 44678999999999999999998644
No 58
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.15 E-value=0.13 Score=33.57 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=31.3
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD 269 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~ 269 (310)
|.|.++..+|.+.+|+..|...++.|...+.....
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788899999999999999999999999987654
No 59
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=95.15 E-value=0.058 Score=40.31 Aligned_cols=46 Identities=4% Similarity=0.016 Sum_probs=37.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecC
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEE 282 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~ 282 (310)
.|+|.+.+++|+|.+|+.+|.++++.+...++.+. +. ..|.+.+.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~ 47 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIE 47 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecC
Confidence 57899999999999999999999999999999765 44 335555543
No 60
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.84 E-value=0.11 Score=35.77 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=38.7
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecC
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEE 282 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~ 282 (310)
|+|.+.++||.+.+|+..|.++++++.+..+...+ +.....|.+++..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC
Confidence 46788999999999999999999999999887765 5555566666543
No 61
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.71 E-value=0.16 Score=36.21 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=39.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEe
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKV 280 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv 280 (310)
.|.|...+++|+|.+|+..|.+.++.+..++.... ++.....|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 46788899999999999999999999999988764 456666777765
No 62
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.57 E-value=0.27 Score=36.28 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=41.4
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe---CCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF---DNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~---~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+.|.-+.+||.|.+|+..|.++|..|++...... .+.-...+++.++... ..++|.++|.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~---~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS---KENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch---HHHHHHHHHhC
Confidence 5667788999999999999999999999987764 2333344455442211 14455555543
No 63
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=94.57 E-value=0.023 Score=57.84 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCcchhHhHHHHHHH
Q 043618 109 HIFVERNRRKQMKNYLSVLRSLMPPS--YVQRGDQASIVGGAINYVK 153 (310)
Q Consensus 109 h~~~ER~RR~~~n~~~~~LrslvP~~--~~~k~dkasil~~Ai~YIk 153 (310)
...--+|-|+++|..|..|.+|+|.+ .+.|.||.|||.-++.|++
T Consensus 29 kSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 29 KSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 44455778999999999999999973 3679999999999999986
No 64
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.49 E-value=0.12 Score=37.62 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=38.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-C-CEEEEEEEEEe
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-D-NQVLYTFSVKV 280 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-~-~~vl~s~~~kv 280 (310)
++|+|.+.+++|+|.+++..|.+.++.+...+.... + +.....+.+.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc
Confidence 368999999999999999999999999999987654 3 55545555553
No 65
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.32 E-value=0.37 Score=45.82 Aligned_cols=73 Identities=8% Similarity=-0.018 Sum_probs=55.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhh
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQG 305 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~ 305 (310)
.+.|.|.|+++||+..+|-..|-+++++|..++..+....-++.+.+.+.-.... +.++|+++|..+-..+.-
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~-~~~~L~~~L~~l~~~l~l 79 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL-DEDALRAGFAPIAARFGM 79 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC-CHHHHHHHHHHHHHHhCc
Confidence 5789999999999999999999999999999999754332233445555422233 588999999888776553
No 66
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=94.31 E-value=0.36 Score=36.50 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=40.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCC
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEG 283 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~ 283 (310)
.|.+..+.+||.|.+++..|.++++.+++....... +...|.|.+.++..
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 455666789999999999999999999999877663 45668888887653
No 67
>PRK08577 hypothetical protein; Provisional
Probab=94.16 E-value=0.51 Score=39.63 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=48.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
.+.|.|.+.+++|+|.+|+..|.++++++.+.+..+. ++.....+.+.+.+.. ...+++.+.|..
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~--~~l~~l~~~L~~ 122 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD--IDLEELEEELKK 122 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch--hhHHHHHHHHHc
Confidence 5789999999999999999999999999999888765 3545556677776531 124455555543
No 68
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.16 E-value=0.42 Score=34.12 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=31.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF 268 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~ 268 (310)
.|.|.+++++|.|.+++..|.++++.|...+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47788999999999999999999999999888765
No 69
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.09 E-value=0.42 Score=45.44 Aligned_cols=73 Identities=5% Similarity=0.035 Sum_probs=55.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEE--eCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhh
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT--FDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQG 305 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst--~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~ 305 (310)
.++.|.|.|++|||+..+|-.+|-++|+.|+.++.++ .++.+.-.+.+.+. ... .+.++|.++|.++-..+.-
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~-~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLI-FNLETLRADFAALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCC-CCHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999999999999 77743333333331 112 2578888888887766553
No 70
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.03 E-value=0.37 Score=35.78 Aligned_cols=65 Identities=11% Similarity=-0.026 Sum_probs=51.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
.|.|.|+.+.|+=.+|...+-++||.|....+++.+.-.+..|-+.-....-...=+-+++.|.+
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~ 66 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMS 66 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHh
Confidence 58899999999999999999999999999999999987676777665443322234667776655
No 71
>PRK07334 threonine dehydratase; Provisional
Probab=93.95 E-value=0.22 Score=49.37 Aligned_cols=52 Identities=8% Similarity=0.182 Sum_probs=45.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-----CCEEEEEEEEEecCC
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-----DNQVLYTFSVKVEEG 283 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-----~~~vl~s~~~kv~~~ 283 (310)
.+.|.|.+.+|+|+|.+|+..|.+.++.|.++++.+. ++.+...|+++|.+-
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~ 382 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA 382 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH
Confidence 3899999999999999999999999999999998764 567777788887654
No 72
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.68 E-value=0.46 Score=33.63 Aligned_cols=56 Identities=9% Similarity=0.209 Sum_probs=39.2
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
|.|.-+.+||.|.+++..|.++++.|.+....... +...+. +.+++ .+.+.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~--~~ve~------~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLI--FRTED------IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEE--EEeCC------HHHHHHHHHH
Confidence 56777899999999999999999999887765443 444443 44433 4455555543
No 73
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=93.50 E-value=0.5 Score=33.38 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=36.9
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEE
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSV 278 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~ 278 (310)
+.|...+++|+|.+|+..|.+.++.|.+..+.... +.....|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56788999999999999999999999999987754 665566655
No 74
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=93.07 E-value=1.1 Score=32.53 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=36.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEe
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKV 280 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv 280 (310)
.|.|..+++||.|.+|+..|.+.|+.|.+..+...++. ..+.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 46778899999999999999999999999987666553 4455554
No 75
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=92.96 E-value=0.65 Score=44.31 Aligned_cols=70 Identities=7% Similarity=0.068 Sum_probs=51.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEE--EeCCEEEEEEEEEecC--CcccCCHHHHHHHHHHHHHHhh
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVA--TFDNQVLYTFSVKVEE--GCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vs--t~~~~vl~s~~~kv~~--~~~l~s~eeI~~aL~eil~~i~ 304 (310)
++.|.|.|+++||+..+|-..|-++|+.|++++-. +..+.++ ..+.+.. ... .+.++++++|.++-.++.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff--m~i~~~~~~~~~-~~~~~l~~~l~~l~~~l~ 82 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF--MRVSFHAQSAEA-ASVDTFRQEFQPVAEKFD 82 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE--EEEEEEcCCCCC-CCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999985 2223222 2223221 122 368899999988877654
No 76
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.95 E-value=0.6 Score=33.10 Aligned_cols=33 Identities=9% Similarity=0.255 Sum_probs=30.2
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEE
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT 267 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst 267 (310)
|.|.+.++||.|.+|+..|.++++.|.......
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678889999999999999999999999988765
No 77
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=92.90 E-value=0.79 Score=43.50 Aligned_cols=68 Identities=9% Similarity=0.038 Sum_probs=51.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEEEecCCcccCCHHHHHHHHHH-HHHHh
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSVKVEEGCHLRSMNEVAAAVYD-MMGRV 303 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~e-il~~i 303 (310)
.|.|.|+++||+..+|-..|-++|+.|+.++-+..+ +.++-.+.+.+... . .+.+++++++.+ +-.++
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~-~~~~~l~~~l~~~~~~~~ 72 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-R-LEESSLLAAFKSALAEKF 72 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-C-CCHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999988754 54443334444321 2 368899988888 65554
No 78
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.84 E-value=0.87 Score=32.97 Aligned_cols=35 Identities=6% Similarity=0.189 Sum_probs=31.0
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF 268 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~ 268 (310)
.+.|.++++||.|.+|+..|.+++++|..+.....
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 56788899999999999999999999998876654
No 79
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.79 E-value=1.3 Score=32.07 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=42.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
.|.|..+++||.|.+++..|.+.++.|.+...... ++.....|.+... +.+++.++|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~------~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM------NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC------CHHHHHHHHHH
Confidence 57778899999999999999999999998865443 3455555655531 23456655543
No 80
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.33 E-value=1.1 Score=35.40 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=41.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCC
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEG 283 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~ 283 (310)
..|-+..+++||.|.++|..|..+++.+.+...-... ...-|.|.+.++..
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~ 66 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK 66 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 4555566889999999999999999999999998764 34458888888653
No 81
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=92.32 E-value=0.63 Score=40.72 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=49.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEEEecCCcccCCHHHHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGR 302 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~ 302 (310)
.|.|..+++||.|.+|...|...|+.|.+..+...+ +....+|++. .+.. .++.|...|++++.-
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~~~~--~i~qi~kQl~KLidV 70 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--GDEQ--VIEQITKQLNKLIDV 70 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--CCHH--HHHHHHHHHhccccE
Confidence 578889999999999999999999999999988764 4445555554 3222 367888777776653
No 82
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=92.25 E-value=0.74 Score=40.80 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=53.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhh
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQG 305 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~ 305 (310)
.|.|...++||+|.+|...|-..|+.|.++++......-+..+++-+..+... +++|...|.+++.-++-
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~--ieqL~kQL~KLidVl~V 73 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRT--IEQLTKQLYKLVNILKV 73 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHH--HHHHHHHHHHHhHhhEE
Confidence 67889999999999999999999999999999764332233444445554433 78999999998877654
No 83
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.22 E-value=0.88 Score=34.12 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=38.9
Q ss_pred EEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCC-EEEEEEEEEecC
Q 043618 236 KILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTFSVKVEE 282 (310)
Q Consensus 236 kI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl~s~~~kv~~ 282 (310)
-+..+++||.|.++|..+...++.+.+...-...+ ..-|.|.+.++.
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 34457799999999999999999999999987654 445888888875
No 84
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=92.16 E-value=0.74 Score=32.06 Aligned_cols=45 Identities=9% Similarity=0.214 Sum_probs=36.4
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEE
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVK 279 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~k 279 (310)
|.|..+.+||.|.+++..|-+.++.|....+...+ +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 45678899999999999999999999988887655 5555555554
No 85
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=91.98 E-value=0.68 Score=40.34 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=49.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
.|.|..+++||.|.+|...|...|+.|.+..+...+ +....+|++.- ... .++.|...|++++.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--d~~--~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--DDK--VLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--CHH--HHHHHHHHHhcCcc
Confidence 578888999999999999999999999999998765 44555555553 222 37788888777664
No 86
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=1.1 Score=48.31 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=64.6
Q ss_pred cceEEEEEeCCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEE-eCCEEEEEEEEEecCCcccCCHHHHHHHHHHH
Q 043618 221 VADIEVTMAESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT-FDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDM 299 (310)
Q Consensus 221 ~~~VeV~~~e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst-~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~ei 299 (310)
...+.++...+...|.|.|+.+|.++..+..++...|++|+.+.|-+ .+|+++.+|.+.-.++..+ ..+-.......+
T Consensus 673 Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~-~~dr~~~~~~~l 751 (867)
T COG2844 673 LVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPV-EEDRRAALRGEL 751 (867)
T ss_pred ceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCcc-chhHHHHHHHHH
Confidence 33444455556789999999999999999999999999999999954 6899999999886666544 344444555666
Q ss_pred HHHhhhh
Q 043618 300 MGRVQGE 306 (310)
Q Consensus 300 l~~i~~~ 306 (310)
++.+++.
T Consensus 752 ~~~l~s~ 758 (867)
T COG2844 752 IEALLSG 758 (867)
T ss_pred HHHHhcC
Confidence 6666554
No 87
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=91.45 E-value=0.81 Score=35.11 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=46.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
..|.|...++||.|.++...+...|+.|-+.++...+ +..-.++.+. +... .++.|...|.+++.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~~~~--~i~qi~kQL~KLid 69 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--CTEN--EATLLVSQLKKLIN 69 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--CCHH--HHHHHHHHHhCCcC
Confidence 3678889999999999999999999999999988654 4344455543 2222 35666666665543
No 88
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=91.30 E-value=0.75 Score=36.03 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=48.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCC--EEEEEEEEEecCCcccCCHHHHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN--QVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGR 302 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~--~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~ 302 (310)
.|.+...++||.|.+|...|-..|+.|.++++..... ..-.+|.+.+.+. - .++.|.+.|.+++.=
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~--~-~ieqI~kQL~KlidV 71 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD--T-SLHILIKKLKQQINV 71 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH--H-HHHHHHHHHhCCccE
Confidence 5888999999999999999999999999999987654 3344555443232 2 367787777776543
No 89
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.80 E-value=1.5 Score=32.11 Aligned_cols=59 Identities=8% Similarity=0.108 Sum_probs=40.8
Q ss_pred EEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 236 KILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 236 kI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
.|.-+.+||.|.++++.|.+ +.+|+..+....+ +.....+.+++.+.. ..++|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDRE---DLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 56678899999999999999 9999998887643 233344455554422 35566666654
No 90
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=90.63 E-value=1.6 Score=33.45 Aligned_cols=64 Identities=11% Similarity=0.224 Sum_probs=48.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
-.|.|...++||.|.+++..+..-|+.|-+.++... ++..-.++++ .+ .+ .++.|...|.+++.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~~-~~--~i~ql~kQL~KL~d 69 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--AS-ER--PIDLLSSQLNKLVD 69 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--CC-Cc--hHHHHHHHHhcCcC
Confidence 367888899999999999999999999999999874 3444455554 33 22 47888887776654
No 91
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.79 E-value=3.5 Score=31.17 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=38.0
Q ss_pred EEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecC
Q 043618 237 ILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEE 282 (310)
Q Consensus 237 I~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~ 282 (310)
+..+++||.|.++|..++..++.+.+...-... ...-|.|-+.++.
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 334678999999999999999999999998763 3456888888864
No 92
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=89.63 E-value=0.83 Score=33.46 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
++||.|.+|+..+..-|+.|-+.++... ++..-.++.+. +... .++.|...|.+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~~~--~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GDDR--EIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S-CC--HHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eCch--hHHHHHHHHhccC
Confidence 4799999999999999999999999984 45444554444 4322 3677777766544
No 93
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=89.63 E-value=2.3 Score=38.16 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=57.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC----C--EEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhhh
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD----N--QVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQGE 306 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~----~--~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~~ 306 (310)
+.|.|....+||++.+|-..|-+++++|..++.-+.+ + .+...+.+.+..++ ..++++.+|.++-..++-+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~---~~~~L~~~l~~l~~eL~vd 172 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ---DAANIEQAFKALCTELNAQ 172 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC---CHHHHHHHHHHHHHHhCce
Confidence 5778888999999999999999999999999987764 2 33345555565654 4789999999988887765
Q ss_pred cc
Q 043618 307 AA 308 (310)
Q Consensus 307 ~~ 308 (310)
..
T Consensus 173 ~~ 174 (190)
T PRK11589 173 GS 174 (190)
T ss_pred EE
Confidence 43
No 94
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=89.18 E-value=0.38 Score=34.68 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=36.1
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEec
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVE 281 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~ 281 (310)
|-+.+.++||+|.+++..|.+.++.+...+....++..+..|.+.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~ 48 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE 48 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC
Confidence 34577889999999999999999999887665555666555555543
No 95
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=89.07 E-value=1.2 Score=47.91 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=50.5
Q ss_pred ceEEEEEeC---C--eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcc
Q 043618 222 ADIEVTMAE---S--NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCH 285 (310)
Q Consensus 222 ~~VeV~~~e---~--~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~ 285 (310)
.-|+|.=.+ . .+.|.|.+.+|+|+|.+|..+|-+.++.|+++++.+. ++.+...|+++|.+-.+
T Consensus 651 R~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~ 721 (743)
T PRK10872 651 RIVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQV 721 (743)
T ss_pred eEEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHH
Confidence 346665322 1 3589999999999999999999999999999999765 46777778888876433
No 96
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=88.44 E-value=3.2 Score=47.99 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=61.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe---C--CEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhh
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF---D--NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQG 305 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~---~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~ 305 (310)
+.+.++|....++..|+++|-.|+++||.|+.-.-..+ + ...+|.|.+....+... ..++++..+.+.+..+..
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~-~~~~~~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDAL-DLDDIRERFEEAFEAVWN 566 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccc-cHHHHHHHHHHHHHHHhc
Confidence 45899999988999999999999999999998765433 2 25789999998887654 688999999999887754
No 97
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.17 E-value=3.1 Score=34.27 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=39.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCC-EEEEEEEEEecC
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTFSVKVEE 282 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl~s~~~kv~~ 282 (310)
..|-+..+++||.|.++|..|..+|+.+.+...-...+ ..-|.|.+.++.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 34445557899999999999999999999999887643 345788888764
No 98
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=88.17 E-value=0.55 Score=49.36 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCcchhHhHHHHHHH
Q 043618 107 MTHIFVERNRRKQMKNYLSVLRSLMPPS--YVQRGDQASIVGGAINYVK 153 (310)
Q Consensus 107 ~~h~~~ER~RR~~~n~~~~~LrslvP~~--~~~k~dkasil~~Ai~YIk 153 (310)
.+-.-+-|-||.|-|+-|..|..+||-+ .....|||+|+.-||-|++
T Consensus 48 EkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 48 EKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 3344578999999999999999999852 3467899999999999987
No 99
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=87.85 E-value=0.47 Score=47.13 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC--CCCCCCcchhHhHHHHHHHH
Q 043618 112 VERNRRKQMKNYLSVLRSLMPPS--YVQRGDQASIVGGAINYVKE 154 (310)
Q Consensus 112 ~ER~RR~~~n~~~~~LrslvP~~--~~~k~dkasil~~Ai~YIk~ 154 (310)
.-|.||++-|-.|..|..++|-+ .....||++|+.-|..|||-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 57999999999999999999962 23568999999999999984
No 100
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=87.57 E-value=3.2 Score=35.35 Aligned_cols=65 Identities=8% Similarity=0.103 Sum_probs=51.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEE-EeCCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVA-TFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vs-t~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
.+.+.+.-..|-|.|.++|+++-..++.|++.+=+ ..+|++-.++++....- -.++++|..+|..
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm--~~~V~~ii~kl~k 137 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM--EKDVDKIIEKLRK 137 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh--hhhHHHHHHHHhc
Confidence 46888889999999999999999999999999876 46888777777776532 2357777766654
No 101
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=87.04 E-value=1.1 Score=41.88 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=47.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCcchhHhHHHHHHHHHHHHHH
Q 043618 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPS-YVQRGDQASIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 105 ~r~~h~~~ER~RR~~~n~~~~~LrslvP~~-~~~k~dkasil~~Ai~YIk~Lq~~v~ 160 (310)
+|..-+..||+|=..+|..|..||..||.. ..++..|-..|..|-.||--|-..+.
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 467788999999999999999999999982 13566788899999999998877664
No 102
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=86.61 E-value=2 Score=45.98 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=44.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCC
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEG 283 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~ 283 (310)
.+.|+|.+.+++|+|.+|..+|-+.++.|.++++.+.+ +.+...|.++|.+-
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 678 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR 678 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH
Confidence 35999999999999999999999999999999987764 56667788888664
No 103
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=86.37 E-value=2 Score=45.70 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=45.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-CCEEEEEEEEEecCCc
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-DNQVLYTFSVKVEEGC 284 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-~~~vl~s~~~kv~~~~ 284 (310)
.+.|+|.+.+++|+|.+|+.+|-+.++.|.++++... ++.+...|++.|.+-.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~ 663 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNYK 663 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCHH
Confidence 3699999999999999999999999999999999876 4667777888886643
No 104
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=86.06 E-value=4.1 Score=32.72 Aligned_cols=68 Identities=7% Similarity=0.108 Sum_probs=48.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
+...|.|...++||.|.+|...|-.-|..|-++++...+..-+.-+++-+.++ . .+++|.+.|.+++.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~-~--~i~Qi~kQL~KLid 74 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDD-Q--RLEQMISQIEKLED 74 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCc-h--HHHHHHHHHhCCcC
Confidence 34678899999999999999999999999999888766443233333333332 2 46777777776654
No 105
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=85.68 E-value=2.6 Score=37.79 Aligned_cols=66 Identities=9% Similarity=0.082 Sum_probs=50.2
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.++.|.+.+++|||+...|-++|-++|..|+.++.+..++.+--. +.+.... . +..+|..+|..+-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i--~lvs~~~-~-~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFI--MLLSGSW-N-AITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEE--EEEeCCh-h-HHHHHHHHHHhhh
Confidence 568899999999999999999999999999999999998844333 3332221 1 4667776666554
No 106
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=85.52 E-value=1.7 Score=34.49 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=52.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
.+.|.|.-..|+|+...+..+|-+++++|+..+=+..++.+ ++-+-|+-.....+..+++..|.....++.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~f--tm~~lV~~~~~~~d~~~lr~~l~~~~~~lg 73 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFF--TMIMLVDISKEVVDFAALRDELAAEGKKLG 73 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhc--eeeeEEcCChHhccHHHHHHHHHHHHHhcC
Confidence 36788999999999999999999999999999888888854 333333333222356677777776666554
No 107
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=85.24 E-value=1.2 Score=38.54 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHH
Q 043618 112 VERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQ 157 (310)
Q Consensus 112 ~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~ 157 (310)
.||.|.+.+++.+.-|+.|+|.+...++.+.--|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 5999999999999999999999766666555546666666666543
No 108
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=84.79 E-value=5.5 Score=37.76 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=51.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHh
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRV 303 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i 303 (310)
..+.+.|.|+.++|+...|-..|-++|..|++++-.+. .++++- .+....+....+.+.+.+++..+....
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFm--R~~f~~~~~~~~~~~l~~~f~~~a~~f 78 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFM--RVEFEGEGGPLDREALRAAFAPLAEEF 78 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEE--EEEEecCCCcccHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999999988743 244433 333333333246788888887765543
No 109
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.73 E-value=7.9 Score=29.64 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=40.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
..+.|.-+.+||.|.++++.|- +.+|......... +.....+.++++++. ...+++.++|.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~--~~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGA--EELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcH--HHHHHHHHHHHH
Confidence 4678888999999999999998 6666665555432 344445556665511 124555555544
No 110
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=82.53 E-value=3.7 Score=29.57 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=34.9
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEE
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVK 279 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~k 279 (310)
+-|..+.+||.+.++...|.++|+.|.+..+... ++.....|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 3457788999999999999999999988876553 45555555544
No 111
>PRK08198 threonine dehydratase; Provisional
Probab=82.45 E-value=7.5 Score=38.35 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=47.0
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-----CCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-----DNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-----~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+..+.+.|.-+.+||.|.+|++.|-+.|..|+.++.... .+.+...+.+++.+.. ..++|.++|.+
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~l~~~L~~ 395 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE---HIEEILDALRD 395 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 345788999999999999999999999999998887642 3455556666653211 24555555543
No 112
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=80.60 E-value=12 Score=26.30 Aligned_cols=59 Identities=8% Similarity=0.168 Sum_probs=37.6
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 234 NIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 234 ~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.|.|.+. ..++.+.+++++|.+.++.|.-.+.+..+ .++++-+.+. +.++..++||+.+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~~----~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDED----DATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH----HHHHHHHHHHHHH
Confidence 3555553 46899999999999999999777654433 2333333332 2445566666654
No 113
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=79.05 E-value=11 Score=40.24 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=55.9
Q ss_pred CCeEEEEEEe-cCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 230 ESNANIKILS-TRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 230 e~~~~IkI~c-~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
..+-.+.|.. +.++|.|.++...|--+++.|.++++.+ ++..+..|.+...-+... ++..+.+.+...+
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~ 613 (693)
T PRK00227 544 EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDF-DPQEFLQAYKSGV 613 (693)
T ss_pred ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCC-ChHHHHHHHHHhh
Confidence 4445666666 9999999999999999999999999999 888888999887666655 5777777766554
No 114
>PRK06382 threonine dehydratase; Provisional
Probab=79.02 E-value=10 Score=37.69 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=46.6
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEE----Ee-CCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVA----TF-DNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vs----t~-~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+..+.|.|.-+.+||.|.+|+..|.+++++|+++... .. .+.....|.++..+.. ..++|.+.|.+
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~---~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQD---HLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 4456888889999999999999999999999988764 22 3455566666654211 23456665544
No 115
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=78.20 E-value=16 Score=26.15 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=32.4
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
..+|.+.+++.+|.+.++.|+ .+++.+. ++++-+++. ..+++.++||+.+
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~--~~~~Se~----~is~~v~~~----~~~~av~~Lh~~f 62 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL--QTADSHT----TISCLVSED----DVKEAVNALHEAF 62 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE--EEEcCcc----EEEEEEcHH----HHHHHHHHHHHHh
Confidence 479999999999999999996 3333222 333344332 2445566666654
No 116
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=78.01 E-value=11 Score=36.68 Aligned_cols=66 Identities=8% Similarity=0.247 Sum_probs=47.2
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-----CCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-----DNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-----~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+..+.|.|.-+.+||.|.++++.|.+.+.+|++...... .+.+...++++..+. ...++|.++|.+
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~---~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGK---EHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 445789999999999999999999999999999877632 245555666665431 124456665544
No 117
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.26 E-value=19 Score=25.31 Aligned_cols=52 Identities=8% Similarity=0.062 Sum_probs=33.6
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.+++.+.+++++|.+.+++|.-.+.+..+ .++++-+.+. +.+.+.++||+.+
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~----~~~~a~~~lh~~~ 64 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK----DAVKALNIIHTNL 64 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH----HHHHHHHHHHHHH
Confidence 36899999999999999999777655533 2344444332 2344555565543
No 118
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.78 E-value=25 Score=26.84 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=42.7
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhhh
Q 043618 234 NIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQGE 306 (310)
Q Consensus 234 ~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~~ 306 (310)
.|.|... ..+|.+.+|+++|.+.++.|-.... ... -.+|++.-.+ ..+.+.|..+|+++...++..
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~--sISftV~~sd---~~~~~~~~~~l~~~~~~~~~~ 71 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEV--SISLTLDPSK---LWSRELIQQELDHVVEELEKD 71 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCC--EEEEEEEhhh---hhhhhhHHHHHHHHHHHHHHc
Confidence 3455543 4689999999999999999998853 222 2455555322 223455556777777776653
No 119
>PRK11899 prephenate dehydratase; Provisional
Probab=74.80 E-value=21 Score=33.91 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=48.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCCcccCCHHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEGCHLRSMNEVAAAVYDM 299 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~~~l~s~eeI~~aL~ei 299 (310)
...|-+..+++||.|.++|..|-..|+......+-... ...-|.|.+.++... .-..++.+|.++
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~---~d~~v~~aL~~l 259 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP---EDRNVALALEEL 259 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC---CCHHHHHHHHHH
Confidence 34444555789999999999999999999999998774 456689999987742 123555665554
No 120
>PRK08526 threonine dehydratase; Provisional
Probab=74.04 E-value=18 Score=36.04 Aligned_cols=66 Identities=6% Similarity=0.205 Sum_probs=47.9
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-----CEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-----NQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-----~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+..+.+.|.-+.+||.|.+++..|-+.+.+|+++...... +.+...+.++..+.. ..++|.++|.+
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKE---HQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 4457899999999999999999999999999999886543 235555666655432 24455555543
No 121
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=73.75 E-value=13 Score=34.70 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=9.9
Q ss_pred hhhhHH-HHHHHHHHHHHHHH
Q 043618 107 MTHIFV-ERNRRKQMKNYLSV 126 (310)
Q Consensus 107 ~~h~~~-ER~RR~~~n~~~~~ 126 (310)
.+|..- |+--|.|++++.++
T Consensus 61 L~HLS~EEK~~RrKLKNRVAA 81 (292)
T KOG4005|consen 61 LDHLSWEEKVQRRKLKNRVAA 81 (292)
T ss_pred hcccCHHHHHHHHHHHHHHHH
Confidence 444432 35555566655443
No 122
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.05 E-value=16 Score=26.30 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
+.+|.+.+++.+|.+.++.|.-.+..+.+. ++++-+++. ..+...++||+.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~----sis~~v~~~----~~~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV----NISLIVNDS----EAEGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc----eEEEEEeHH----HHHHHHHHHHHHH
Confidence 357899999999999999998877766655 333333332 2455666666654
No 123
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=71.37 E-value=26 Score=23.74 Aligned_cols=34 Identities=6% Similarity=0.311 Sum_probs=26.5
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEE
Q 043618 234 NIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVAT 267 (310)
Q Consensus 234 ~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst 267 (310)
.|.|.+. ..++.+.+++++|.+.++.|...+.+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3555543 467899999999999999998877644
No 124
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.73 E-value=31 Score=24.02 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=36.4
Q ss_pred EEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 235 IKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 235 IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
|.|.+. ..++.+.+++.+|.+.+++|.-.+.+..+. -.+|.+. .. +.++..++||+.+
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~--~isf~v~--~~----d~~~~~~~lh~~~ 64 (66)
T cd04916 4 IMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEI--SIMIGVH--NE----DADKAVKAIYEEF 64 (66)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccc--EEEEEEe--HH----HHHHHHHHHHHHH
Confidence 444443 468999999999999999997776544332 1233333 22 2445566666654
No 125
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=70.57 E-value=19 Score=27.03 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=35.1
Q ss_pred ceEEEEEeCCeEEEEEEecCCC------ChHHHHHHHHHhcCceEEEEEEEEe
Q 043618 222 ADIEVTMAESNANIKILSTRYP------KQLFKMVTGFHSLGLHVLHLNVATF 268 (310)
Q Consensus 222 ~~VeV~~~e~~~~IkI~c~~r~------g~L~~Il~aLeslgL~Vv~a~vst~ 268 (310)
..|.+++.++.+.|.|.+.+.. ..+-.|-..|...|+.|.+++|...
T Consensus 27 v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 27 VEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 4666677889999999998642 3477889999999999999888754
No 126
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=69.62 E-value=29 Score=29.20 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=34.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEE
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQV 272 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~v 272 (310)
.|.|..+++||-|..+...|.+.|+.+--.++.-.+++-
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFG 43 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFG 43 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcc
Confidence 578899999999999999999999999999988766643
No 127
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=69.58 E-value=3 Score=44.12 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=53.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043618 104 SQRMTHIFVERNRRKQMKNYLSVLRSLMPPSY---VQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 104 ~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~---~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
+++++|+.+|.+||..++-.|..|.+++-++. ..|+.+..-+...+.||..+++....+.++-..+.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr 719 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLR 719 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhh
Confidence 34899999999999999999999999887631 24666777799999999999888777766655444
No 128
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=68.54 E-value=18 Score=31.61 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=39.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe---CCEEEEEEEEEec
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF---DNQVLYTFSVKVE 281 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~---~~~vl~s~~~kv~ 281 (310)
+.+-|.-+.+||+|+++|+=|-+.|..|++.--+.. ++++---++++++
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 567778889999999999999999999999888765 6666555555554
No 129
>PLN02705 beta-amylase
Probab=68.49 E-value=17 Score=38.30 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhc
Q 043618 106 RMTHIFVERNRRKQMKNYLSVLRSL 130 (310)
Q Consensus 106 r~~h~~~ER~RR~~~n~~~~~Lrsl 130 (310)
|......||+||.--..-|.-||.+
T Consensus 85 ~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 85 KERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 5667789999998666666666553
No 130
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=67.04 E-value=40 Score=23.50 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=21.9
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEE
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNV 265 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~v 265 (310)
..+|.+.+|+++|++.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 3578999999999999999999853
No 131
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=66.77 E-value=16 Score=39.18 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=48.5
Q ss_pred ceEEEEEeC---C--eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-CCEEEEEEEEEecCC
Q 043618 222 ADIEVTMAE---S--NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-DNQVLYTFSVKVEEG 283 (310)
Q Consensus 222 ~~VeV~~~e---~--~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-~~~vl~s~~~kv~~~ 283 (310)
.-|+|.=.. . .+.|.|...+++|+|.+|+++|-+.+..|++++..+. ++.....|.+.|.+-
T Consensus 612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~ 679 (701)
T COG0317 612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNL 679 (701)
T ss_pred eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcH
Confidence 456665321 1 4689999999999999999999999999999999886 455556777777653
No 132
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=66.51 E-value=20 Score=26.00 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=35.6
Q ss_pred CCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 242 YPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 242 r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
++|.+.+++.+|.+.+++|.-.+.+..+- .+++-|++. ..++..++||+.+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~----~is~~V~~~----~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNV----DVQFVVDRD----DYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCee----EEEEEEEHH----HHHHHHHHHHHHH
Confidence 57899999999999999998777666543 333444432 3556667776654
No 133
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.30 E-value=43 Score=23.22 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=37.0
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 234 NIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 234 ~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.|.|.+. ..++.+.+++++|.+.++.|.-.+.+..+. -.+|.+. .. ..+++.+.||+.+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~--~isf~i~--~~----~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEY--NISFVVA--ED----DGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEe--HH----HHHHHHHHHHHHh
Confidence 3444443 467899999999999999997776544332 2334443 21 2455666666654
No 134
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=63.88 E-value=29 Score=25.14 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=27.1
Q ss_pred eEEEEEEec----CCCChHHHHHHHHHhcCceEEEEE
Q 043618 232 NANIKILST----RYPKQLFKMVTGFHSLGLHVLHLN 264 (310)
Q Consensus 232 ~~~IkI~c~----~r~g~L~~Il~aLeslgL~Vv~a~ 264 (310)
-..|+|..+ ..+|.+.+++.+|-+.++.|...+
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 357777776 378999999999999999998887
No 135
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.86 E-value=62 Score=24.21 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=34.5
Q ss_pred cCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHH
Q 043618 240 TRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGR 302 (310)
Q Consensus 240 ~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~ 302 (310)
+..+|.+.+|+.+|.+.++.|-.... ... -.+|++.-.+ ....+.++.+|.+-+.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~--s~~--~iSftv~~~d---~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT--SEI--SVALTLDNTG---STSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee--cCC--EEEEEEeccc---cchhHHHHHHHHHHHHh
Confidence 45689999999999999999988854 222 2455555222 21123344455555444
No 136
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=61.40 E-value=46 Score=31.75 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=50.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
+..|-+..+++||.|.++|..|...|++.....+-... ...-|.|.+.++....- ..+++||.++-
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~---~~v~~AL~el~ 260 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD---PLVKEALEELK 260 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc---HhHHHHHHHHH
Confidence 44555556689999999999999999999999988765 45668999998776432 45666665543
No 137
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=59.73 E-value=54 Score=32.60 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=47.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCC-EEEEEEEEEecCCcccCCHHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTFSVKVEEGCHLRSMNEVAAAVYDM 299 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl~s~~~kv~~~~~l~s~eeI~~aL~ei 299 (310)
..|-+..+++||.|.++|..|-..|+......+-...+ ..-|.|-+.++... .-..+..+|.++
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~---~d~~~~~aL~~l 362 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANL---RSAEMQKALKEL 362 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCC---CCHHHHHHHHHH
Confidence 33334447899999999999999999999999887654 45699999987642 123456665554
No 138
>PRK11898 prephenate dehydratase; Provisional
Probab=58.65 E-value=37 Score=32.18 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=45.0
Q ss_pred EEEEEEecC-CCChHHHHHHHHHhcCceEEEEEEEEeCC-EEEEEEEEEecCCcccCCHHHHHHHHHHH
Q 043618 233 ANIKILSTR-YPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTFSVKVEEGCHLRSMNEVAAAVYDM 299 (310)
Q Consensus 233 ~~IkI~c~~-r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl~s~~~kv~~~~~l~s~eeI~~aL~ei 299 (310)
..|-+..++ +||.|.++|..|...++.+.+...-...+ ..-|.|-+.++... +-..+.++|.++
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~---~~~~~~~al~~L 262 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI---DDVLVAEALKEL 262 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC---CCHHHHHHHHHH
Confidence 344455555 59999999999999999999999987643 44588888886532 223455555443
No 139
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=57.08 E-value=71 Score=23.80 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=25.2
Q ss_pred EEEEEecC---CCChHHHHHHHHHhcCceEEEEEE
Q 043618 234 NIKILSTR---YPKQLFKMVTGFHSLGLHVLHLNV 265 (310)
Q Consensus 234 ~IkI~c~~---r~g~L~~Il~aLeslgL~Vv~a~v 265 (310)
.|.|.+.+ .+|.+.+|++.|.+.++.|-....
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe
Confidence 34444433 589999999999999999998864
No 140
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=56.42 E-value=1e+02 Score=28.58 Aligned_cols=48 Identities=4% Similarity=-0.074 Sum_probs=35.4
Q ss_pred eEEEEEEecCCCC--hHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEE
Q 043618 232 NANIKILSTRYPK--QLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVK 279 (310)
Q Consensus 232 ~~~IkI~c~~r~g--~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~k 279 (310)
...++|.|.+.+. ....+++.|++.++.+.+.++... ++.+...+.+.
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~ 193 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELV 193 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEE
Confidence 5688899988664 578888999999999999999665 34444333333
No 141
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=55.71 E-value=47 Score=21.81 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHhcCceEEEEEEEE
Q 043618 242 YPKQLFKMVTGFHSLGLHVLHLNVAT 267 (310)
Q Consensus 242 r~g~L~~Il~aLeslgL~Vv~a~vst 267 (310)
.++.+.++++.|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 67899999999999999998776543
No 142
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=53.74 E-value=42 Score=29.51 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=49.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHh
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRV 303 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i 303 (310)
.+.+.-.+.||.|.++...+-..|+.+-+..+...+ +....++.+.. +.+ ..|+|...|+.++..+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g--~~~--~~EQi~kQL~kLidV~ 73 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG--DEQ--VLEQIIKQLNKLIDVL 73 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC--Ccc--hHHHHHHHHHhhccce
Confidence 466777889999999999999999999998887654 33334555554 212 4789999888887654
No 143
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=53.43 E-value=15 Score=23.50 Aligned_cols=17 Identities=47% Similarity=0.646 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043618 113 ERNRRKQMKNYLSVLRS 129 (310)
Q Consensus 113 ER~RR~~~n~~~~~Lrs 129 (310)
=|+||++++.++..||+
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 38899999999999986
No 144
>PRK08639 threonine dehydratase; Validated
Probab=52.17 E-value=72 Score=31.79 Aligned_cols=66 Identities=5% Similarity=0.018 Sum_probs=43.0
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCC--EEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN--QVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~--~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+..+.+++.-+.|||.|.++++.+-+.+-+|+..+.....+ .....+.+++.+.. ..++|.++|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~---h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAE---DYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 44679999999999999999995555555888877653222 22233445554421 24667776654
No 145
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=50.83 E-value=62 Score=32.82 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=39.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecC
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEE 282 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~ 282 (310)
..|-+..++++|.|.++|..+..+++.+.+...-... ...-|.|-+.++.
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 4455555778999999999999999999999987653 3345778888765
No 146
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.34 E-value=78 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEE
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNV 265 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~v 265 (310)
+.++.+.+++.+|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4578999999999999999987764
No 147
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=49.57 E-value=88 Score=31.13 Aligned_cols=66 Identities=3% Similarity=0.006 Sum_probs=45.0
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-C-CEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-D-NQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-~-~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+..+.+++.-+.+||.|.++++.+-+.+-+|++.+.-.. + +.....+.+++.+.. ..++|.++|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~---h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKE---DFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 456799999999999999999977777779998887642 2 233344556655421 24566666554
No 148
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=48.04 E-value=86 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEE
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNV 265 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~v 265 (310)
..++.+.+++..|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4589999999999999999977763
No 149
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=47.83 E-value=73 Score=32.56 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=39.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCC-EEE-EEEEEEecC
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVL-YTFSVKVEE 282 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl-~s~~~kv~~ 282 (310)
..|-+..++++|.|.++|..++..|+.+.|+..-.... ..- |.|-+.++.
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg 83 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVEL 83 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEc
Confidence 34455557789999999999999999999999877643 334 777788764
No 150
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=47.79 E-value=1.1e+02 Score=22.48 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=21.8
Q ss_pred cCCCChHHHHHHHHHhcCceEEEEE
Q 043618 240 TRYPKQLFKMVTGFHSLGLHVLHLN 264 (310)
Q Consensus 240 ~~r~g~L~~Il~aLeslgL~Vv~a~ 264 (310)
...+|.+.+++.+|.+.++.|....
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE
Confidence 3468999999999999999998775
No 151
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.58 E-value=1.2e+02 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEE
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNV 265 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~v 265 (310)
..+|.+.+|+++|.+.++.|-....
T Consensus 13 ~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 13 QQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4689999999999999999998854
No 152
>PRK12483 threonine dehydratase; Reviewed
Probab=46.74 E-value=1.3e+02 Score=31.20 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=41.6
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCCcccCCHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEGCHLRSMNEVAAAVY 297 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~~~l~s~eeI~~aL~ 297 (310)
+..+.+.|.-+.+||.|.+++..|-.. +|+..+....+ ......+.+++.+.... .++|.++|.
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~--~~~i~~~l~ 407 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDP--RAQLLASLR 407 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhh--HHHHHHHHH
Confidence 446789999999999999999999888 77777776532 23334444554432211 145555553
No 153
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=45.43 E-value=1.2e+02 Score=29.86 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=43.5
Q ss_pred EEeCCeEEEEEEe---cCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 227 TMAESNANIKILS---TRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 227 ~~~e~~~~IkI~c---~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
...++-+.|.|.. ..++|.+.+++.+|.+.++.|.....+..+.. .+|.+ ... ..+.+.+.|++.+
T Consensus 255 ~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~--Is~~V--~~~----d~~~a~~~L~~~~ 323 (401)
T TIGR00656 255 ALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETS--ISLTV--DET----DADEAVRALKDQS 323 (401)
T ss_pred EEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCce--EEEEE--eHH----HHHHHHHHHHHHH
Confidence 4455667888883 55789999999999999999987765433322 23333 221 2455566666655
No 154
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=45.36 E-value=1.4e+02 Score=23.33 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=45.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.+.|....+|+.|.++|...+--|+.|...+.++. .+.+-..|++. +.. +++-+...|.++.
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~----s~R-~~~lL~~QLeKl~ 68 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD----SDR-SVDLLTSQLEKLY 68 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc----CCC-ChHHHHHHHHHHc
Confidence 45667778999999999999999999999999986 45444444443 222 5777777776654
No 155
>PRK06291 aspartate kinase; Provisional
Probab=44.73 E-value=1.2e+02 Score=30.82 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=46.7
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 226 VTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 226 V~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
|++.++-+.|.|... .++|++.+++.+|.+.++.|+-.+.++.+. .+++-|++. ..+....+||..+
T Consensus 392 i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~----~Is~vV~~~----d~~~av~~Lh~~f 461 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEV----NISFVVDEE----DGERAVKVLHDEF 461 (465)
T ss_pred eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccC----eEEEEEeHH----HHHHHHHHHHHHh
Confidence 455566678888875 378999999999999999999777666655 333334332 2456666666655
No 156
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.54 E-value=1.1e+02 Score=21.70 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
..+|.+.+++.+|.+.++.++.... .+- .+++-+++. +.++..++||+.+
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~--s~~----~is~vv~~~----d~~~av~~LH~~f 61 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAA--NDL----NLTFVVDED----QADGLCARLHFQL 61 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeC--CCC----eEEEEEeHH----HHHHHHHHHHHHH
Confidence 4789999999999988777744332 222 223333332 3456666776654
No 157
>PLN02317 arogenate dehydratase
Probab=43.16 E-value=1.5e+02 Score=29.64 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=38.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCE---------------EEEEEEEEecC
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQ---------------VLYTFSVKVEE 282 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~---------------vl~s~~~kv~~ 282 (310)
..|-+.-+.+||.|.++|..|...++.+.+...-..... .-|.|.+.++.
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg 348 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEA 348 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEc
Confidence 344444467899999999999999999999998765333 34888888765
No 158
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=43.11 E-value=39 Score=36.29 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=47.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
..++|....|+|+|..|+.+|. +|.-+.|+|.+..++..|.++ ++. .-..|..+|..++
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~~---~r~~~~~~~~~~~ 690 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PGF---DRATVERDVTRVL 690 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Ccc---cHHHHHHHHHHHH
Confidence 5889999999999999999999 999999999999998888877 221 2345666666554
No 159
>PRK09224 threonine dehydratase; Reviewed
Probab=42.87 E-value=1.7e+02 Score=30.10 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=41.4
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+..+.+.|.-+.|||.|.++++.|- +.+|+..+....+ +..-..+.+++.+... ..++|.++|.+
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~--~~~~i~~~L~~ 391 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQE--ERAEIIAQLRA 391 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhh--HHHHHHHHHHH
Confidence 3468999999999999999999998 5666666665432 2333344455543211 14455555543
No 160
>PLN02551 aspartokinase
Probab=42.19 E-value=1.4e+02 Score=31.03 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=45.1
Q ss_pred EeCCeEEEEEEec--CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 228 MAESNANIKILST--RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 228 ~~e~~~~IkI~c~--~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
+..+-+.|.|... +.+|++.+++.+|.+.++.|.-.+..+.+- .|++-|++. +.+...++||+.+-
T Consensus 441 v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSei----nIS~vV~~~----d~~~Av~aLH~~Ff 508 (521)
T PLN02551 441 LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKV----NISLIVNDD----EAEQCVRALHSAFF 508 (521)
T ss_pred EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCc----EEEEEEeHH----HHHHHHHHHHHHHh
Confidence 3345556777654 468999999999999999998777655444 334444443 35667778887763
No 161
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=41.00 E-value=1.4e+02 Score=21.70 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=23.4
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEEe
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNVATF 268 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~vst~ 268 (310)
..++.+.+++++|.+.++.|.-.+.+..
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~ 40 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASS 40 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCC
Confidence 4678999999999999999987776533
No 162
>PRK09034 aspartate kinase; Reviewed
Probab=40.67 E-value=1.2e+02 Score=30.64 Aligned_cols=67 Identities=10% Similarity=0.208 Sum_probs=44.8
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 226 VTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 226 V~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
|....+-+.|.|... ..+|.+.+++.+|.+.+++|.-.+.++.+ ..+++-|.+. ..+...++||+.+
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se----~~Is~vV~~~----d~~~av~~LH~~f 448 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE----ISIMFGVKNE----DAEKAVKAIYNAF 448 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc----ceEEEEEcHH----HHHHHHHHHHHHH
Confidence 444556677888543 47899999999999999999877654433 3444444442 2345566677665
No 163
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=40.08 E-value=1.2e+02 Score=27.06 Aligned_cols=71 Identities=11% Similarity=0.191 Sum_probs=49.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CC---E-EEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhhh
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DN---Q-VLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQGE 306 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~---~-vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~~ 306 (310)
+.++|...+|||++-++-+.|..+|+.+.+....+. .+ . +...+++.+.-+ + +++.|..++..+-..+.-+
T Consensus 93 v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~-~i~~l~~~f~al~~~L~v~ 169 (176)
T COG2716 93 VWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--L-SISALRDAFEALCDELNVD 169 (176)
T ss_pred EEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc--C-cHHHHHHHHHHHHHhhcce
Confidence 467778888999999999999999999888777653 22 1 122333344333 2 5778888888777666544
No 164
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.70 E-value=56 Score=25.00 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHH-HHHHHHHHhhhh
Q 043618 242 YPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAA-AVYDMMGRVQGE 306 (310)
Q Consensus 242 r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~-aL~eil~~i~~~ 306 (310)
.-|.+.++|+.||.+++.+-|.-..- ++ +++-+++. ++.. .+.+++.+|+++
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSGI-D~-----~Siii~~~-------~~~~~~~~~i~~~i~~~ 66 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSGI-DD-----ISIIIRDN-------QLTDEKEQKILAEIKEE 66 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCCC-cc-----EEEEEEcc-------ccchhhHHHHHHHHHHh
Confidence 46899999999999999998865332 22 33333332 2333 566666666665
No 165
>PRK00907 hypothetical protein; Provisional
Probab=38.83 E-value=1.1e+02 Score=24.37 Aligned_cols=63 Identities=8% Similarity=0.030 Sum_probs=38.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCc--eEEEEEE--EEeCCEEEEEEEEEecCCcccCCHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGL--HVLHLNV--ATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVY 297 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL--~Vv~a~v--st~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~ 297 (310)
++-|||.-..++++...|++.++.+.= +.-+..+ |..|..+-.++++.+....+ .+.|.++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQ---ld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQ---YDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHH---HHHHHHHHh
Confidence 367888888899999999999998753 3333333 33444333455555543322 456666654
No 166
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=38.77 E-value=1.9e+02 Score=29.75 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=40.9
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEecCCcccCCHHHHHHHHH
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVEEGCHLRSMNEVAAAVY 297 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~~~~~l~s~eeI~~aL~ 297 (310)
+..+.+.|.-+.+||.|.++++.|-. .+|+..+....+ +..-..+.+++.+.. ..++|.++|.
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~~~---~~~~l~~~L~ 386 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSNPQ---ERQEILARLN 386 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCCHH---HHHHHHHHHH
Confidence 45789999999999999999999987 466666665432 233334445554321 2345555554
No 167
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=38.64 E-value=1.3e+02 Score=20.84 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=22.5
Q ss_pred cCCCChHHHHHHHHHhcCceEEEEEEE
Q 043618 240 TRYPKQLFKMVTGFHSLGLHVLHLNVA 266 (310)
Q Consensus 240 ~~r~g~L~~Il~aLeslgL~Vv~a~vs 266 (310)
++.+|.+.+++..|.+.++.|.-...+
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 567899999999999999999755443
No 168
>PRK08210 aspartate kinase I; Reviewed
Probab=38.63 E-value=1.5e+02 Score=29.14 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=41.9
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 225 EVTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 225 eV~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.+.+.++-+.|.|... .++|.+.+++.+|.+.++.|+. +++.+. .+++-+... ..+...++||+.+
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s~~----~is~vv~~~----~~~~a~~~Lh~~f 400 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADSHT----TIWVLVKEE----DMEKAVNALHDAF 400 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecCCC----EEEEEEcHH----HHHHHHHHHHHHh
Confidence 3444455667777764 4789999999999999999975 333333 233333222 2455666666654
No 169
>PRK07431 aspartate kinase; Provisional
Probab=38.50 E-value=1.5e+02 Score=30.89 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=46.7
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 225 EVTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 225 eV~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
+++...+-+.|.|... ..+|++.+++.+|.+.++.|+..+ +.+. .+++-+.+. ..+++.++||+.+
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~----~Is~vv~~~----d~~~av~~Lh~~f 409 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEV----KVSCVIDAE----DGDKALRAVCEAF 409 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCC----EEEEEEcHH----HHHHHHHHHHHHh
Confidence 4555566778888875 478999999999999999997776 3232 344444332 3566777777776
No 170
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=38.34 E-value=28 Score=30.93 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVY 297 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~ 297 (310)
-+.|.....++||+...|.++.-+.|-.++.+.++.+++ .+++.+++...-. .++.|+++|.
T Consensus 5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~--~~a~i~lisgs~d--av~~le~~l~ 66 (176)
T COG2716 5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGE--EFAGIMLISGSWD--AVTLLEATLP 66 (176)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhc--ceeEEEEEeeCHH--HHHHHHHHhh
Confidence 378899999999999999999999999999999999998 4566677655322 2445555543
No 171
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=37.68 E-value=1.8e+02 Score=28.57 Aligned_cols=62 Identities=13% Similarity=0.275 Sum_probs=39.7
Q ss_pred eCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 229 AESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 229 ~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
..+-+.|.|... .+||.+.+++++|.+.++.|+.. ++.+.. +++-++.. +.+...++||+.+
T Consensus 334 ~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i--~~s~~~----is~vv~~~----d~~~av~~Lh~~f 398 (401)
T TIGR00656 334 EEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI--GSSETN----ISFLVDEK----DAEKAVRKLHEVF 398 (401)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE--EcCCCE----EEEEEeHH----HHHHHHHHHHHHH
Confidence 344556666664 57999999999999999999854 343332 22222221 3456667777655
No 172
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=36.97 E-value=31 Score=26.46 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=49.5
Q ss_pred EEEEecC-CCChHHHHHHHHHhcCceEEEEEEEEeCCE---------EEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 235 IKILSTR-YPKQLFKMVTGFHSLGLHVLHLNVATFDNQ---------VLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 235 IkI~c~~-r~g~L~~Il~aLeslgL~Vv~a~vst~~~~---------vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
|.|.-++ ..+.+..+-..|-++|+.|.+.+-. .+. -.+++.+.++... .+.++++++|.++-..+.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l--~~~~~~~~~~~~~~~~~e~~v~~~~--~~~~~lr~~L~~la~elg 77 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL--SGRVPLEEQDDSPKACVEFSVRGQP--ADLEALRAALLELASELN 77 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh--hccccccccCCCCcEEEEEEEeCCC--CCHHHHHHHHHHHhcccC
Confidence 4556666 7899999999999999988776652 222 1456666666433 378999999998777665
Q ss_pred hhccC
Q 043618 305 GEAAF 309 (310)
Q Consensus 305 ~~~~~ 309 (310)
-+-||
T Consensus 78 vDIav 82 (84)
T cd04871 78 VDIAF 82 (84)
T ss_pred ceEEE
Confidence 54443
No 173
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=36.69 E-value=1.8e+02 Score=31.78 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=47.1
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 226 VTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 226 V~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
|++.++-+.|.|... ..+|++.+++.+|.+.++.|+-.+..+.+. ++++-|.+. ..+...++||+.+
T Consensus 390 i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~----~Is~vV~~~----d~~~al~~LH~~f 459 (819)
T PRK09436 390 LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSER----SISVVIDND----DATKALRACHQSF 459 (819)
T ss_pred EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccc----eEEEEEcHH----HHHHHHHHHHHHH
Confidence 455567778888875 368999999999999999999887766655 333333332 2445666666665
No 174
>PRK06291 aspartate kinase; Provisional
Probab=33.70 E-value=2.2e+02 Score=28.78 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=31.8
Q ss_pred eCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeC
Q 043618 229 AESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFD 269 (310)
Q Consensus 229 ~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~ 269 (310)
.++-+.|.|... ..+|.+.+++.+|.+.++.|...+-++..
T Consensus 318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse 361 (465)
T PRK06291 318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE 361 (465)
T ss_pred eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 344568888765 46899999999999999999887654433
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.69 E-value=80 Score=23.88 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q 043618 145 VGGAINYVKELEQLVQTLEVHKRIH 169 (310)
Q Consensus 145 l~~Ai~YIk~Lq~~v~~L~~~~~~~ 169 (310)
+..||+-|..|+.++++|+.++..+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6789999999999999999875544
No 176
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.57 E-value=1.2e+02 Score=23.48 Aligned_cols=48 Identities=10% Similarity=0.311 Sum_probs=33.9
Q ss_pred EEEecCCCChHHHHHHHHHhcCceEEEEEEEE--eCCEEEEEEEEEecCC
Q 043618 236 KILSTRYPKQLFKMVTGFHSLGLHVLHLNVAT--FDNQVLYTFSVKVEEG 283 (310)
Q Consensus 236 kI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst--~~~~vl~s~~~kv~~~ 283 (310)
+++-.-||..+.++--||..|++-|-++.|.. .+++--........++
T Consensus 4 ElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~ 53 (77)
T cd04898 4 ELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH 53 (77)
T ss_pred cccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC
Confidence 44455689999999999999999999999974 3444433333333333
No 177
>PLN02551 aspartokinase
Probab=31.75 E-value=2e+02 Score=29.86 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=29.6
Q ss_pred CCeEEEEEEecC---CCChHHHHHHHHHhcCceEEEEE
Q 043618 230 ESNANIKILSTR---YPKQLFKMVTGFHSLGLHVLHLN 264 (310)
Q Consensus 230 e~~~~IkI~c~~---r~g~L~~Il~aLeslgL~Vv~a~ 264 (310)
.+-+.|.|.+.+ .+|.+.+|+..|.++++.|....
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is 401 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 401 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe
Confidence 445688998764 68999999999999999999885
No 178
>PRK06635 aspartate kinase; Reviewed
Probab=30.77 E-value=2.1e+02 Score=28.07 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=30.6
Q ss_pred EEEeCCeEEEEEEe---cCCCChHHHHHHHHHhcCceEEEEE
Q 043618 226 VTMAESNANIKILS---TRYPKQLFKMVTGFHSLGLHVLHLN 264 (310)
Q Consensus 226 V~~~e~~~~IkI~c---~~r~g~L~~Il~aLeslgL~Vv~a~ 264 (310)
++...+-+.|.|.. ...||.+.+++++|.+.++.|....
T Consensus 334 i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 34445566788865 4578999999999999999998764
No 179
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.72 E-value=2.4e+02 Score=21.40 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=40.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC---CEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD---NQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~---~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+.+.|.-+.|||.|.+.++.|-. +-+|..-+....+ +.++..+.++ +. ..+++.+.|.+
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~~~--~~----~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQVP--DA----DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEEeC--hH----HHHHHHHHHHH
Confidence 56778889999999999999933 7888888887654 3455555443 21 34566665544
No 180
>PRK02047 hypothetical protein; Provisional
Probab=29.26 E-value=1.8e+02 Score=22.78 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=38.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHhc--CceE--EEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSL--GLHV--LHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVY 297 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLesl--gL~V--v~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~ 297 (310)
..+||.-...+.+...|++.++.+ +++. ++.+-|..|..+-+++++.+....+ +++|.++|.
T Consensus 17 ~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq---~~~iY~~L~ 82 (91)
T PRK02047 17 FPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQ---LDNIYRALT 82 (91)
T ss_pred CeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHH---HHHHHHHHh
Confidence 567777777888888888888776 4434 4444455555554666666644332 456666654
No 181
>PLN02550 threonine dehydratase
Probab=29.12 E-value=2.6e+02 Score=29.62 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=34.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEEEec
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSVKVE 281 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~kv~ 281 (310)
.+.+.|.-+.+||.|.+++..|-.. +|++.+....+ +.....+.+++.
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~ 465 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH 465 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC
Confidence 4788999999999999999999875 77777766532 233344445544
No 182
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=28.81 E-value=2.8e+02 Score=25.56 Aligned_cols=57 Identities=14% Similarity=0.256 Sum_probs=37.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhh
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQG 305 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~ 305 (310)
.+.|.|. |..|..|-.+|+++|++|.++.+.-.-... +++ -++-..++..++.++++
T Consensus 166 ~~~~~c~--p~~~~~v~~~L~~~g~~i~~~e~~~~P~~~-----v~l--------~~e~~~~~~~lie~Lee 222 (234)
T PF01709_consen 166 EFEFICD--PSDLSAVKKALEKKGYEIESAELEYIPNNP-----VEL--------SEEDAEKVEKLIEALEE 222 (234)
T ss_dssp EEEEEEE--GGGHHHHHHHHHHTT---SEEEEEEEESS------EE----------HHHHHHHHHHHHHHHT
T ss_pred eEEEEEC--HHHHHHHHHHHHHcCCCeeEEEEEEeCCCC-----ccc--------CHHHHHHHHHHHHHHhC
Confidence 3777886 778999999999999999999886443211 122 23556677777777765
No 183
>smart00338 BRLZ basic region leucin zipper.
Probab=28.42 E-value=74 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043618 149 INYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 149 i~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
-.||..|+.+++.|+.+...+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777666654
No 184
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=28.38 E-value=1.1e+02 Score=23.52 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcchhHhHHHH-HHHHHHH
Q 043618 120 MKNYLSVLRSLMPPSYVQRGDQASIVGGAIN-YVKELEQ 157 (310)
Q Consensus 120 ~n~~~~~LrslvP~~~~~k~dkasil~~Ai~-YIk~Lq~ 157 (310)
|.++|..|.+- .-..|+-+|.+||+ ||.+++.
T Consensus 16 ~~eRL~~Ls~~------tgrtkayyvrEaIE~~ieemED 48 (80)
T COG4710 16 LKERLDNLSKN------TGRTKAYYVREAIEAYIEEMED 48 (80)
T ss_pred HHHHHHHHHHh------cCCchhHHHHHHHHHHHHHHHH
Confidence 45566666652 33468999999996 7777664
No 185
>PRK06635 aspartate kinase; Reviewed
Probab=28.30 E-value=2.1e+02 Score=28.03 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=35.4
Q ss_pred EeCCeEEEEEEe-cCCCChHHHHHHHHHhcCceEEEEEEEEeC-CEEEEEEEE
Q 043618 228 MAESNANIKILS-TRYPKQLFKMVTGFHSLGLHVLHLNVATFD-NQVLYTFSV 278 (310)
Q Consensus 228 ~~e~~~~IkI~c-~~r~g~L~~Il~aLeslgL~Vv~a~vst~~-~~vl~s~~~ 278 (310)
..++-+.|.|.. ..++|.+.+++.+|.+.++.|...+.+... +..-++|.+
T Consensus 258 ~~~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v 310 (404)
T PRK06635 258 FDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTV 310 (404)
T ss_pred ecCCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEE
Confidence 345556777665 346899999999999999999987665433 233445444
No 186
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.91 E-value=82 Score=22.67 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043618 150 NYVKELEQLVQTLEVHKRI 168 (310)
Q Consensus 150 ~YIk~Lq~~v~~L~~~~~~ 168 (310)
.||..|+.++..|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~ 44 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEE 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 187
>PRK14637 hypothetical protein; Provisional
Probab=27.72 E-value=2.8e+02 Score=23.82 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHH---HHHHHHHH
Q 043618 242 YPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVA---AAVYDMMG 301 (310)
Q Consensus 242 r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~---~aL~eil~ 301 (310)
.-|....+-.+++++|++++.+.+...++..+..+.+--+++ + ++++.. .+|..++.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g--V-~iddC~~vSr~Is~~LD 66 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG--V-GLDDCARVHRILVPRLE 66 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--C-CHHHHHHHHHHHHHHhc
Confidence 346677777889999999999999988765444444432232 3 566654 45555554
No 188
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.70 E-value=1.5e+02 Score=21.31 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHH
Q 043618 114 RNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTL 162 (310)
Q Consensus 114 R~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L 162 (310)
|.-|-.+.+.+..+..++-- .+ .++|.+||+++-+.++.+
T Consensus 17 R~~RHD~~NhLqvI~gllql---g~------~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQL---GK------YEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---T-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC---CC------HHHHHHHHHHHHHHHHHH
Confidence 77777889999999998854 22 677899999999888876
No 189
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=27.50 E-value=1.3e+02 Score=30.07 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=52.8
Q ss_pred CcceEEEEEeCC--eEEEEEEecCCCCh-HHHHHHHHHh--c-CceEEEEEEEEeCC---------EEEEEEEEEecCCc
Q 043618 220 PVADIEVTMAES--NANIKILSTRYPKQ-LFKMVTGFHS--L-GLHVLHLNVATFDN---------QVLYTFSVKVEEGC 284 (310)
Q Consensus 220 ~~~~VeV~~~e~--~~~IkI~c~~r~g~-L~~Il~aLes--l-gL~Vv~a~vst~~~---------~vl~s~~~kv~~~~ 284 (310)
--.+|+|+|.|+ =+.|+|.-+++..+ |-.+-+.+.. . .++|..+..++... .=.|...+..+.
T Consensus 210 GREDvDvRMLG~GRPFvlEi~~P~rr~~dl~~le~~IN~~~~g~V~v~~L~~~~~~~v~~ik~~~~~K~Y~alV~~~~-- 287 (388)
T TIGR01213 210 GREDVDVRMLGTGRPFVLEVKEPRYRKIDLDPLEEEINTSGKGKVEVEGLKFATREEVEEVKEEKHRKVYRALVEVDG-- 287 (388)
T ss_pred CccccceeeccCCCceEEEecCCccCCCCHHHHHHHHhhccCCCEEEEEeEEEcHHHHHHHhccCCceEEEEEEEECC--
Confidence 467999999975 39999999988665 4445455555 3 48888888765432 112444444433
Q ss_pred ccCCHHHHHHHHHHHHH-Hhhh
Q 043618 285 HLRSMNEVAAAVYDMMG-RVQG 305 (310)
Q Consensus 285 ~l~s~eeI~~aL~eil~-~i~~ 305 (310)
.+ +.++++.++..+.. .|+|
T Consensus 288 ~v-~~e~L~~~~~~l~g~~I~Q 308 (388)
T TIGR01213 288 PV-SDEDLEELCKELEGATIYQ 308 (388)
T ss_pred CC-CHHHHHHHHHhccCCEEEc
Confidence 24 67888877766544 3443
No 190
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.90 E-value=1e+02 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043618 145 VGGAINYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 145 l~~Ai~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
+..||+-|.-||-.+++|+.++..+.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 67899999999999999998877543
No 191
>PRK08818 prephenate dehydrogenase; Provisional
Probab=26.76 E-value=2.4e+02 Score=27.91 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=35.1
Q ss_pred EEEEec-CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCC
Q 043618 235 IKILST-RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEG 283 (310)
Q Consensus 235 IkI~c~-~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~ 283 (310)
|.+.-+ ++||.|.+|+..|-..++.+.+..+..... .-|.|.+.+...
T Consensus 298 l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~-~~y~f~i~~~~~ 346 (370)
T PRK08818 298 LSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPA-GELHFRIGFEPG 346 (370)
T ss_pred EEEECCCCCCChHHHHHHHHHHcCcccceEEEecccC-ceEEEEEEEecc
Confidence 334445 899999999999999999999999943322 234476766553
No 192
>PRK00341 hypothetical protein; Provisional
Probab=26.60 E-value=1.8e+02 Score=22.86 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=38.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEE---EeCCE-EEEEEEEEecCCcccCCHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVA---TFDNQ-VLYTFSVKVEEGCHLRSMNEVAAAVY 297 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vs---t~~~~-vl~s~~~kv~~~~~l~s~eeI~~aL~ 297 (310)
+-|||.-...+++...|++.++.+. ++-...++ +.+|. +-+++++.+....+ .++|.++|.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q---~~~iy~~L~ 82 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQ---LQDINSALR 82 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHH---HHHHHHHHh
Confidence 5677777888999999999998775 54444333 22343 33666666654432 456666654
No 193
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=26.52 E-value=3e+02 Score=25.05 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHhc--CceEEEEEEEEeCC-EEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 244 KQLFKMVTGFHSL--GLHVLHLNVATFDN-QVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 244 g~L~~Il~aLesl--gL~Vv~a~vst~~~-~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
....++.+.+++. ..+|.++.+...+. .....+++.++.+..+...+++++.+.+.+
T Consensus 205 ~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l 264 (284)
T PF01545_consen 205 ELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRL 264 (284)
T ss_dssp HHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3456777777554 48999999999998 888888888877753322334444444443
No 194
>PF14992 TMCO5: TMCO5 family
Probab=25.63 E-value=91 Score=29.80 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 043618 143 SIVGGAINYVKELEQLVQTLEVHKRIH 169 (310)
Q Consensus 143 sil~~Ai~YIk~Lq~~v~~L~~~~~~~ 169 (310)
.+..++++||++|++.++.++.+++.+
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999887764
No 195
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=25.59 E-value=3.4e+02 Score=24.35 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=30.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF 268 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~ 268 (310)
-|+|...++||.|.+|--.+-++|..+.+++--..
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~ 38 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLE 38 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhh
Confidence 46788899999999999999999999999887554
No 196
>PRK08841 aspartate kinase; Validated
Probab=25.47 E-value=2.4e+02 Score=27.94 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=45.0
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHh
Q 043618 229 AESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRV 303 (310)
Q Consensus 229 ~e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i 303 (310)
..+-+.|.|.-...+|.+.+++.+|.+.++.|+...- .+ ..+++-|+.. +.+...++||+.+.--
T Consensus 315 ~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~--s~----~~is~vv~~~----~~~~av~~lH~~f~~~ 379 (392)
T PRK08841 315 SESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST--EP----QSSMLVLDPA----NVDRAANILHKTYVTS 379 (392)
T ss_pred eCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC--CC----cEEEEEEeHH----HHHHHHHHHHHHHcCC
Confidence 3455677777777899999999999999999965552 22 2444444332 3567778888877554
No 197
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=25.26 E-value=4.4e+02 Score=26.76 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=47.0
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 225 EVTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 225 eV~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
+|.+..+-+.|.|.-. ..||...+++.+|.+.++.|+-.+ +.. .++++-|++. ..+...++||+.+.
T Consensus 376 ~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--sSe----~~Is~vV~~~----~~~~av~~LH~~~~ 445 (447)
T COG0527 376 EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--SSE----ISISFVVDEK----DAEKAVRALHEAFF 445 (447)
T ss_pred eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--cCC----ceEEEEEccH----HHHHHHHHHHHHHh
Confidence 4555566677777764 368999999999999999999887 222 2344445443 36677788887763
No 198
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.19 E-value=2.4e+02 Score=19.64 Aligned_cols=50 Identities=8% Similarity=0.165 Sum_probs=27.6
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.+++++.+++.+|...++.+ .+....+. ++++-+.+. +.+.+..+||+.+
T Consensus 13 ~~~~v~~~i~~~L~~i~i~~--i~~~~s~~----~is~~V~~~----~~~~a~~~Lh~~f 62 (64)
T cd04917 13 ETAGVEKRIFDALEDINVRM--ICYGASNH----NLCFLVKEE----DKDEVVQRLHSRL 62 (64)
T ss_pred CCcCHHHHHHHHHHhCCeEE--EEEecCcc----EEEEEEeHH----HHHHHHHHHHHHH
Confidence 47899999999997643333 33222222 333333332 2456666666644
No 199
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.11 E-value=2.1e+02 Score=18.81 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=23.0
Q ss_pred cCCCChHHHHHHHHHhcCceEEEEEEE
Q 043618 240 TRYPKQLFKMVTGFHSLGLHVLHLNVA 266 (310)
Q Consensus 240 ~~r~g~L~~Il~aLeslgL~Vv~a~vs 266 (310)
++.+|.+.+++.+|.+.++.|...+.+
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 557899999999999999999776654
No 200
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=24.59 E-value=1.9e+02 Score=27.12 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCCCC------------------CCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 043618 117 RKQMKNYLSVLRSLMPPSYV------------------QRGDQASIVGGAINYVKELEQLVQTLEVHKRIH 169 (310)
Q Consensus 117 R~~~n~~~~~LrslvP~~~~------------------~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~ 169 (310)
|..|...|..|+..=..+.- -.|-++.||.|+ =||.|++||++||.++...
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~--AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQ--ALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 45678888888775544100 011122333332 2788999999999998663
No 201
>PRK11191 RNase E inhibitor protein; Provisional
Probab=24.57 E-value=2.5e+02 Score=23.97 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCChHHHHHHHHHhcCceEEEEEEE-EeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 242 YPKQLFKMVTGFHSLGLHVLHLNVA-TFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 242 r~g~L~~Il~aLeslgL~Vv~a~vs-t~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
....|-+++..+.++|.+|..+.-. .-++..+|+|.+-.+.. + ..+.|.+.+.+++.
T Consensus 42 d~~~lek~a~~a~klGyeV~~~ee~e~edg~~~~~~~~~~e~~--l-~~e~I~~~~~~L~~ 99 (138)
T PRK11191 42 DFDKLEKAAVEAFKLGYEVTDAEELELEDGDVIFCCDAVSEVA--L-NAELIDAQVEQLLA 99 (138)
T ss_pred CHHHHHHHHHHHHHcCCeeecccccccCCCCeEEEEEEEecCC--C-CHHHHHHHHHHHHH
Confidence 5567889999999999999665543 55677788877765443 3 45555555544443
No 202
>PRK14639 hypothetical protein; Provisional
Probab=24.28 E-value=2.6e+02 Score=23.69 Aligned_cols=50 Identities=8% Similarity=0.236 Sum_probs=32.6
Q ss_pred HHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHH---HHHHHHHH
Q 043618 249 MVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVA---AAVYDMMG 301 (310)
Q Consensus 249 Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~---~aL~eil~ 301 (310)
+-..++++|++++.+.+...++..+..+.+.-+++ + ++++.. .+|..++.
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v-~iddC~~vSr~is~~LD 55 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG--V-NLDDCERLSELLSPIFD 55 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--C-CHHHHHHHHHHHHHHhc
Confidence 44578999999999999988775544444442333 3 566554 55555554
No 203
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=23.65 E-value=5.1e+02 Score=29.27 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=47.2
Q ss_pred cceEEEEEeC-C--eEEEEEEe-cC--CCChHHHHHHHHHhcCceEEEEEEEEe-CCEEEEEEEEEecCCc
Q 043618 221 VADIEVTMAE-S--NANIKILS-TR--YPKQLFKMVTGFHSLGLHVLHLNVATF-DNQVLYTFSVKVEEGC 284 (310)
Q Consensus 221 ~~~VeV~~~e-~--~~~IkI~c-~~--r~g~L~~Il~aLeslgL~Vv~a~vst~-~~~vl~s~~~kv~~~~ 284 (310)
.|-|+|.-++ + .+.+-|-- ++ ..+.|+.|.+.+.-++|.+..+=+-++ ++..+|+|-++...+.
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 4566666555 3 34444433 22 347899999999999999999999887 7788899999866553
No 204
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.24 E-value=1.1e+02 Score=21.29 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 043618 152 VKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 152 Ik~Lq~~v~~L~~~~~~~~ 170 (310)
|..|+++|+.|+.++..+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq 19 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQ 19 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4567788888887777665
No 205
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=22.91 E-value=3.7e+02 Score=26.80 Aligned_cols=66 Identities=12% Similarity=0.236 Sum_probs=0.0
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 225 EVTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 225 eV~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.|....+-+.|.|... ..||.+.+++.+|.+.++.|.-...+- .++++-+... +.+...++||+.+
T Consensus 371 ~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~se------~~Is~vV~~~----d~~~a~~~Lh~~f 439 (441)
T TIGR00657 371 SVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISSSE------INISFVVDEK----DAEKAVRLLHNAL 439 (441)
T ss_pred eEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEecC------CcEEEEEeHH----HHHHHHHHHHHHh
No 206
>PRK04998 hypothetical protein; Provisional
Probab=22.47 E-value=2.3e+02 Score=21.95 Aligned_cols=62 Identities=6% Similarity=0.011 Sum_probs=38.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcC--ceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLG--LHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVY 297 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslg--L~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~ 297 (310)
..+||.-+..+..+..|...++.+. .+.+..+-|..|..+-+++++.+....+ +++|.++|.
T Consensus 16 ~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq---~~~iY~~L~ 79 (88)
T PRK04998 16 FTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQ---VETLYEELA 79 (88)
T ss_pred ceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHH---HHHHHHHHh
Confidence 4567777777888889999997763 2234444454455454666666654432 445666554
No 207
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=22.07 E-value=1.4e+02 Score=25.92 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhc
Q 043618 106 RMTHIFVERNRRKQMKNYLSVLRSL 130 (310)
Q Consensus 106 r~~h~~~ER~RR~~~n~~~~~Lrsl 130 (310)
|.+....||+||.--..-|.-||..
T Consensus 12 rEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 12 RENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567779999997777777788764
No 208
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.99 E-value=1.5e+02 Score=23.00 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043618 144 IVGGAINYVKELEQLVQTLEVHKRIHIL 171 (310)
Q Consensus 144 il~~Ai~YIk~Lq~~v~~L~~~~~~~~~ 171 (310)
-+..||+-|.-||-.|++|+.++..+..
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999998777653
No 209
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=21.88 E-value=2.8e+02 Score=21.05 Aligned_cols=58 Identities=12% Similarity=0.330 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCceE-----------EEEEEEEeC---------CEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 245 QLFKMVTGFHSLGLHV-----------LHLNVATFD---------NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 245 ~L~~Il~aLeslgL~V-----------v~a~vst~~---------~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
.+.+++..|+.+..+. .+++++.+. +.+...+.+....+ .+.++|.+.|.+++.++.
T Consensus 32 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~~~n~ip~~a~~~~~~R~~p~---~~~~~i~~~i~~~~~~~~ 108 (111)
T PF07687_consen 32 AAARFLNALEELEFEWAFRPEEFFPGPPTLNIGSIEGGTAPNVIPDEATLTVDIRYPPG---EDLEEIKAEIEAAVEKIA 108 (111)
T ss_dssp HHHHHHHHHHHTTCHBTSTHHHCTCTSEEEEEEEEEEESSTTEESSEEEEEEEEEESTC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccccccccceeEeecccCCcCCEECCEEEEEEEEECCCc---chHHHHHHHHHHHHHHhh
Confidence 4788888888884332 455555432 22223334443332 257889999998888775
Q ss_pred h
Q 043618 305 G 305 (310)
Q Consensus 305 ~ 305 (310)
.
T Consensus 109 ~ 109 (111)
T PF07687_consen 109 K 109 (111)
T ss_dssp H
T ss_pred h
Confidence 4
No 210
>PRK07431 aspartate kinase; Provisional
Probab=21.36 E-value=4.4e+02 Score=27.38 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=43.4
Q ss_pred EEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 227 TMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 227 ~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.+.++-+.|.|.-. .+||++.+++.+|.+.++.|+... +.+ ..+++-|+.. ..++..++||+.+
T Consensus 514 ~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~S~----~~Is~vV~~~----~~~~av~~Lh~~f 580 (587)
T PRK07431 514 EDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--TSE----IRTSCVVAED----DGVKALQAVHQAF 580 (587)
T ss_pred EEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--ccc----eEEEEEEeHH----HHHHHHHHHHHHh
Confidence 33345567777764 579999999999999999996666 222 2333344332 3567778888777
No 211
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=21.11 E-value=1.5e+02 Score=20.48 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=19.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 043618 106 RMTHIFVERNRRKQMKNYLSVLRSLMPPS 134 (310)
Q Consensus 106 r~~h~~~ER~RR~~~n~~~~~LrslvP~~ 134 (310)
-+.....|=.||..++..|..-..++|.+
T Consensus 9 SM~~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 9 SMQKAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 34556778888999999999999999985
No 212
>PRK06349 homoserine dehydrogenase; Provisional
Probab=20.87 E-value=5e+02 Score=25.91 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=31.4
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEE
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVA 266 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vs 266 (310)
...+|++...++||.|.+|-..|.++++.+.++...
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~ 382 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQK 382 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEec
Confidence 357999999999999999999999999988876543
No 213
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=20.33 E-value=1.4e+02 Score=29.81 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=45.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
....|-|.-.++||++.+|...|-++++.|-..++...++..+..| .+++ .+ .+++.+.|.+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii--e~D~--~~--~~~~~~~i~~ 398 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI--DVDA--DY--AEEALDALKA 398 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE--EeCC--CC--cHHHHHHHHc
Confidence 4457777888899999999999999999999988888887665544 4433 22 4455555543
No 214
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=20.12 E-value=1.5e+02 Score=30.52 Aligned_cols=36 Identities=0% Similarity=0.043 Sum_probs=32.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD 269 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~ 269 (310)
.++|.|..|-|+..+|++.|-..++++....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999996654
Done!