Query 043618
Match_columns 310
No_of_seqs 214 out of 1235
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 1.3E-16 4.5E-21 122.9 7.7 67 104-171 5-71 (82)
2 1hlo_A Protein (transcription 99.6 7.4E-16 2.5E-20 118.1 7.4 69 103-171 10-78 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 9.4E-16 3.2E-20 118.3 7.5 67 105-171 2-68 (83)
4 4h10_B Circadian locomoter out 99.6 1.5E-15 5.2E-20 113.7 5.8 60 103-163 6-65 (71)
5 1nkp_A C-MYC, MYC proto-oncoge 99.6 4E-15 1.4E-19 116.1 8.1 69 102-170 3-72 (88)
6 1an4_A Protein (upstream stimu 99.5 2.5E-15 8.6E-20 110.7 3.0 55 105-159 5-63 (65)
7 1nlw_A MAD protein, MAX dimeri 99.5 5E-14 1.7E-18 108.0 8.7 65 106-170 2-67 (80)
8 1a0a_A BHLH, protein (phosphat 99.5 2.8E-15 9.5E-20 110.0 1.0 56 105-160 2-62 (63)
9 4ati_A MITF, microphthalmia-as 99.5 5.3E-14 1.8E-18 115.4 7.2 62 106-167 28-91 (118)
10 4h10_A ARYL hydrocarbon recept 99.5 1.7E-14 5.8E-19 108.7 2.9 57 101-157 5-63 (73)
11 3u5v_A Protein MAX, transcript 99.4 2.2E-14 7.7E-19 108.9 2.6 60 104-163 4-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.4 5.5E-13 1.9E-17 99.1 5.8 58 103-160 10-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 3.1E-12 1.1E-16 92.8 5.9 56 105-160 2-58 (60)
14 4f3l_A Mclock, circadian locom 98.9 9.8E-10 3.4E-14 104.8 5.4 54 104-158 11-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 6.6E-09 2.3E-13 100.2 5.3 54 105-158 13-68 (387)
16 2lfh_A DNA-binding protein inh 98.7 2.4E-09 8.3E-14 78.9 1.4 46 112-157 21-67 (68)
17 4ath_A MITF, microphthalmia-as 98.4 4.7E-07 1.6E-11 69.2 6.6 51 117-167 4-56 (83)
18 4aya_A DNA-binding protein inh 98.3 7.9E-07 2.7E-11 69.9 6.0 48 113-160 33-81 (97)
19 1zpv_A ACT domain protein; str 97.4 0.0027 9.1E-08 47.8 12.3 69 232-303 5-73 (91)
20 1u8s_A Glycine cleavage system 96.8 0.0088 3E-07 51.5 10.3 67 232-302 6-72 (192)
21 2ko1_A CTR148A, GTP pyrophosph 96.3 0.0089 3E-07 44.2 6.3 51 232-282 5-55 (88)
22 2nyi_A Unknown protein; protei 96.1 0.023 7.9E-07 49.3 9.1 50 232-281 5-54 (195)
23 2nyi_A Unknown protein; protei 96.1 0.027 9.2E-07 48.8 9.5 70 232-305 93-168 (195)
24 1u8s_A Glycine cleavage system 95.9 0.055 1.9E-06 46.4 10.5 72 232-306 93-172 (192)
25 3obi_A Formyltetrahydrofolate 94.1 0.29 9.9E-06 45.2 10.3 73 230-304 4-78 (288)
26 3o1l_A Formyltetrahydrofolate 93.5 0.44 1.5E-05 44.4 10.4 71 232-304 22-94 (302)
27 3n0v_A Formyltetrahydrofolate 93.5 0.41 1.4E-05 44.1 10.1 71 231-304 7-79 (286)
28 3p96_A Phosphoserine phosphata 93.4 0.27 9.4E-06 46.7 9.1 72 231-304 11-82 (415)
29 2f1f_A Acetolactate synthase i 92.8 0.17 5.8E-06 43.1 5.9 64 233-300 4-69 (164)
30 3lou_A Formyltetrahydrofolate 92.7 0.61 2.1E-05 43.1 10.1 72 231-304 9-84 (292)
31 2pc6_A Probable acetolactate s 92.0 0.17 5.9E-06 43.1 5.0 65 233-301 5-71 (165)
32 2fgc_A Acetolactate synthase, 91.9 0.29 9.8E-06 42.9 6.3 66 232-301 29-96 (193)
33 2jhe_A Transcription regulator 91.7 0.42 1.4E-05 39.2 6.9 37 234-271 2-38 (190)
34 3nrb_A Formyltetrahydrofolate 90.4 1.1 3.7E-05 41.3 9.0 69 231-303 6-76 (287)
35 1y7p_A Hypothetical protein AF 90.0 0.81 2.8E-05 40.8 7.4 61 232-298 4-69 (223)
36 2f06_A Conserved hypothetical 79.8 12 0.00041 29.8 9.3 56 235-298 75-130 (144)
37 2dtj_A Aspartokinase; protein- 78.2 15 0.00052 30.7 9.8 54 227-280 10-67 (178)
38 2f06_A Conserved hypothetical 71.7 26 0.00088 27.8 9.2 35 234-268 8-42 (144)
39 2re1_A Aspartokinase, alpha an 71.3 20 0.0007 29.4 8.8 39 226-264 97-138 (167)
40 2qmx_A Prephenate dehydratase; 70.2 12 0.0004 34.4 7.5 65 232-299 200-265 (283)
41 2dt9_A Aspartokinase; protein- 69.8 18 0.00063 29.7 8.1 53 227-279 11-67 (167)
42 3luy_A Probable chorismate mut 69.5 38 0.0013 31.6 11.0 57 241-300 217-274 (329)
43 2wt7_A Proto-oncogene protein 67.2 5.8 0.0002 28.0 3.8 43 113-170 1-43 (63)
44 2qmw_A PDT, prephenate dehydra 66.4 15 0.00052 33.3 7.4 65 231-299 185-253 (267)
45 3he4_B Synzip5; heterodimeric 65.2 9.4 0.00032 24.6 4.0 27 144-170 4-30 (46)
46 3s1t_A Aspartokinase; ACT doma 64.5 31 0.001 29.0 8.6 67 225-301 89-158 (181)
47 2dtj_A Aspartokinase; protein- 64.4 31 0.0011 28.7 8.6 66 226-301 89-157 (178)
48 3mwb_A Prephenate dehydratase; 63.9 18 0.0006 33.6 7.4 65 232-299 201-267 (313)
49 2dt9_A Aspartokinase; protein- 61.1 38 0.0013 27.7 8.4 66 225-300 88-156 (167)
50 2l5g_A GPS2 protein, G protein 60.3 12 0.00042 23.8 3.9 31 139-169 4-34 (38)
51 2re1_A Aspartokinase, alpha an 58.6 22 0.00077 29.2 6.6 53 227-279 20-74 (167)
52 3ab4_A Aspartokinase; aspartat 52.9 65 0.0022 30.6 9.6 53 227-279 259-315 (421)
53 3s1t_A Aspartokinase; ACT doma 52.5 71 0.0024 26.7 8.8 52 228-279 12-67 (181)
54 2oqq_A Transcription factor HY 48.0 17 0.00059 23.7 3.1 22 150-171 3-24 (42)
55 3byp_A CZRB protein; membrane 47.5 78 0.0027 22.9 8.2 56 245-300 11-70 (94)
56 1zme_C Proline utilization tra 45.8 18 0.0006 25.1 3.3 23 149-171 43-65 (70)
57 4go7_X Aspartokinase; transfer 44.6 67 0.0023 27.6 7.5 53 228-280 31-87 (200)
58 1phz_A Protein (phenylalanine 44.2 22 0.00077 34.5 4.7 66 232-301 34-100 (429)
59 2er8_A Regulatory protein Leu3 44.2 14 0.00049 25.8 2.6 22 149-170 48-69 (72)
60 1rwu_A Hypothetical UPF0250 pr 43.8 59 0.002 25.4 6.4 61 232-296 36-99 (109)
61 1dh3_A Transcription factor CR 43.0 22 0.00075 24.4 3.3 22 150-171 22-43 (55)
62 3p96_A Phosphoserine phosphata 42.6 1.2E+02 0.0041 28.1 9.6 72 231-306 100-172 (415)
63 3ab4_A Aspartokinase; aspartat 42.5 98 0.0034 29.3 9.1 66 226-301 338-406 (421)
64 2rrl_A FLIK, flagellar HOOK-le 40.7 65 0.0022 27.2 6.6 47 222-268 101-153 (169)
65 2zzt_A Putative uncharacterize 38.5 85 0.0029 23.7 6.5 56 245-300 11-68 (107)
66 1gd2_E Transcription factor PA 36.3 30 0.001 25.0 3.3 19 150-168 29-47 (70)
67 3tvi_A Aspartokinase; structur 35.0 1.4E+02 0.0048 28.8 8.9 67 226-300 368-437 (446)
68 2akf_A Coronin-1A; coiled coil 33.5 37 0.0013 20.5 2.7 15 152-166 15-29 (32)
69 2lqj_A Mg2+ transport protein; 32.6 1E+02 0.0034 23.2 6.0 41 232-272 8-51 (94)
70 4hti_A Receptor-type tyrosine- 32.3 1.7E+02 0.0059 22.5 7.5 82 224-309 1-87 (99)
71 1ygy_A PGDH, D-3-phosphoglycer 30.7 2.2E+02 0.0076 27.7 9.7 61 232-298 454-516 (529)
72 4go7_X Aspartokinase; transfer 29.9 2.2E+02 0.0076 24.3 8.4 67 225-301 108-177 (200)
73 3h90_A Ferrous-iron efflux pum 29.7 1.9E+02 0.0065 25.5 8.3 57 245-301 207-265 (283)
74 3mah_A Aspartokinase; aspartat 28.9 77 0.0026 25.5 5.1 67 225-301 81-150 (157)
75 1pd7_B MAD1; PAH2, SIN3, eukar 28.1 69 0.0024 18.7 3.2 19 139-157 2-20 (26)
76 2dgc_A Protein (GCN4); basic d 27.4 54 0.0019 23.0 3.3 22 149-170 29-50 (63)
77 3c1m_A Probable aspartokinase; 27.1 1.3E+02 0.0045 28.9 7.2 67 226-300 398-467 (473)
78 1pyi_A Protein (pyrimidine pat 26.4 50 0.0017 24.2 3.2 22 149-170 47-68 (96)
79 2jee_A YIIU; FTSZ, septum, coi 26.1 76 0.0026 23.6 4.0 26 145-170 15-40 (81)
80 1hwt_C Protein (heme activator 26.0 24 0.00083 25.1 1.3 21 149-169 57-77 (81)
81 1jnm_A Proto-oncogene C-JUN; B 25.8 60 0.0021 22.4 3.3 22 149-170 21-42 (62)
82 3fx7_A Putative uncharacterize 24.6 1.2E+02 0.0043 23.1 5.1 22 145-166 65-86 (94)
83 3l76_A Aspartokinase; alloster 23.5 2.6E+02 0.0088 27.9 8.7 67 225-301 348-417 (600)
84 1xkm_B Distinctin chain B; por 22.8 84 0.0029 17.9 2.8 18 143-160 4-21 (26)
85 3coq_A Regulatory protein GAL4 22.6 68 0.0023 23.0 3.3 22 149-170 44-65 (89)
86 1kd8_B GABH BLL, GCN4 acid bas 22.4 82 0.0028 19.8 3.0 18 152-169 3-20 (36)
87 3muj_A Transcription factor CO 21.9 96 0.0033 25.4 4.2 36 120-155 96-133 (138)
88 1t2k_D Cyclic-AMP-dependent tr 21.3 84 0.0029 21.5 3.3 21 150-170 22-42 (61)
89 1gmj_A ATPase inhibitor; coile 20.6 2E+02 0.0067 21.5 5.3 44 117-170 35-78 (84)
90 3mah_A Aspartokinase; aspartat 20.5 82 0.0028 25.4 3.6 39 227-265 13-54 (157)
91 2wq1_A General control protein 20.1 1E+02 0.0034 19.0 3.0 19 152-170 2-20 (33)
92 3c1m_A Probable aspartokinase; 20.1 1.8E+02 0.0061 28.0 6.6 64 229-300 315-381 (473)
93 2jqq_A Conserved oligomeric go 20.0 42 0.0014 29.1 1.8 45 117-164 53-97 (204)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.66 E-value=1.3e-16 Score=122.95 Aligned_cols=67 Identities=18% Similarity=0.288 Sum_probs=62.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043618 104 SQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHIL 171 (310)
Q Consensus 104 ~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~~~ 171 (310)
.+|.+|+.+||+||++||+.|..|++|||.. ..|+||++||.+||+||++|+.+++.|+.+...+..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999984 489999999999999999999999999999887764
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=7.4e-16 Score=118.11 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=63.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043618 103 ESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHIL 171 (310)
Q Consensus 103 ~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~~~ 171 (310)
..+|..|+.+||+||..||+.|..|+++||.....|.+|++||..||+||++|+++++.|+.+++.+..
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999999999999854478999999999999999999999999999987753
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.61 E-value=9.4e-16 Score=118.25 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=60.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043618 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHIL 171 (310)
Q Consensus 105 ~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~~~ 171 (310)
+|.+|+.+||+||..||+.|..|+++||.....|++|++||..||+||++|+++++.|+.+++.+..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999844579999999999999999999999999888777653
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=113.67 Aligned_cols=60 Identities=20% Similarity=0.456 Sum_probs=55.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHHH
Q 043618 103 ESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLE 163 (310)
Q Consensus 103 ~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L~ 163 (310)
..+|.+|+.+||+||++||++|..|++|||.. ..|+||++||..||+||++||+++.-|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45689999999999999999999999999974 4699999999999999999999987765
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=4e-15 Score=116.12 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=60.4
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043618 102 VESQRMTHIFVERNRRKQMKNYLSVLRSLMPPS-YVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 102 ~~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~-~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
+..+|.+|+..||+||..||+.|..|+++||.. ...|.+|++||.+||+||++|+.+.+.|..+++.+.
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999983 136999999999999999999999998877665543
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=2.5e-15 Score=110.69 Aligned_cols=55 Identities=31% Similarity=0.519 Sum_probs=49.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCCcchhHhHHHHHHHHHHHHH
Q 043618 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSYV----QRGDQASIVGGAINYVKELEQLV 159 (310)
Q Consensus 105 ~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~----~k~dkasil~~Ai~YIk~Lq~~v 159 (310)
+|.+|+.+||+||++||+.|..|++|||.... .|++|++||.+||+||++|+++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999998532 27899999999999999999765
No 7
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=5e-14 Score=108.02 Aligned_cols=65 Identities=26% Similarity=0.244 Sum_probs=59.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043618 106 RMTHIFVERNRRKQMKNYLSVLRSLMPPS-YVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 106 r~~h~~~ER~RR~~~n~~~~~LrslvP~~-~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
|.+||..||+||..||+.|..|+++||.. ...|.+|++||..|++||++|+++.+.|..+++.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999962 246888999999999999999999999998887765
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.50 E-value=2.8e-15 Score=109.97 Aligned_cols=56 Identities=29% Similarity=0.437 Sum_probs=49.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCCcchhHhHHHHHHHHHHHHHH
Q 043618 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPSY-----VQRGDQASIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 105 ~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~-----~~k~dkasil~~Ai~YIk~Lq~~v~ 160 (310)
+|.+|+.+||+||++||+.|..|++|||..+ ..+.+|++||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 3788999999999999999999999999631 2567899999999999999998653
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.48 E-value=5.3e-14 Score=115.43 Aligned_cols=62 Identities=23% Similarity=0.423 Sum_probs=52.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCcchhHhHHHHHHHHHHHHHHHHHHHHH
Q 043618 106 RMTHIFVERNRRKQMKNYLSVLRSLMPPSY--VQRGDQASIVGGAINYVKELEQLVQTLEVHKR 167 (310)
Q Consensus 106 r~~h~~~ER~RR~~~n~~~~~LrslvP~~~--~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~ 167 (310)
+..|+.+||+||++||++|..|++|||... ..|++|++||.+||+||++|+++++.|+....
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999742 24789999999999999999999999987543
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.46 E-value=1.7e-14 Score=108.72 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=50.2
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCcchhHhHHHHHHHHHHH
Q 043618 101 EVESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSY--VQRGDQASIVGGAINYVKELEQ 157 (310)
Q Consensus 101 e~~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~--~~k~dkasil~~Ai~YIk~Lq~ 157 (310)
....+|..|+.+||+||++||+.|..|++|||.+. ..|+||++||..||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34456899999999999999999999999999731 3699999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.44 E-value=2.2e-14 Score=108.88 Aligned_cols=60 Identities=22% Similarity=0.295 Sum_probs=48.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCC-CCCCCC-CcchhHhHHHHHHHHHHHHHHHHH
Q 043618 104 SQRMTHIFVERNRRKQMKNYLSVLRSLMPP-SYVQRG-DQASIVGGAINYVKELEQLVQTLE 163 (310)
Q Consensus 104 ~~r~~h~~~ER~RR~~~n~~~~~LrslvP~-~~~~k~-dkasil~~Ai~YIk~Lq~~v~~L~ 163 (310)
.+|..|+..||+||..||+.|..|+.+||. ....|. .|++||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999994 223454 688999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.37 E-value=5.5e-13 Score=99.09 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=52.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHH
Q 043618 103 ESQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 103 ~~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~ 160 (310)
..+|..|+..||+|+..||+.|..||.+||.....|.+|+.||..||+||.+|++.++
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4568999999999999999999999999997546789999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.29 E-value=3.1e-12 Score=92.78 Aligned_cols=56 Identities=27% Similarity=0.330 Sum_probs=50.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCCcchhHhHHHHHHHHHHHHHH
Q 043618 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPS-YVQRGDQASIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 105 ~r~~h~~~ER~RR~~~n~~~~~LrslvP~~-~~~k~dkasil~~Ai~YIk~Lq~~v~ 160 (310)
+|..|+..||+|+..||+.|..||.+||.. ...|.+|..||..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999973 25688999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.89 E-value=9.8e-10 Score=104.81 Aligned_cols=54 Identities=19% Similarity=0.450 Sum_probs=42.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHH
Q 043618 104 SQRMTHIFVERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQL 158 (310)
Q Consensus 104 ~~r~~h~~~ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~ 158 (310)
.+|.+|+.+||+||++||+.|..|++|||.. ..|+||++||..||.||+.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~-~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCC-CCCcCHHHHHHHHHHHHHHHHhh
Confidence 3478899999999999999999999999942 68999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.73 E-value=6.6e-09 Score=100.18 Aligned_cols=54 Identities=26% Similarity=0.456 Sum_probs=48.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCCcchhHhHHHHHHHHHHHH
Q 043618 105 QRMTHIFVERNRRKQMKNYLSVLRSLMPPS--YVQRGDQASIVGGAINYVKELEQL 158 (310)
Q Consensus 105 ~r~~h~~~ER~RR~~~n~~~~~LrslvP~~--~~~k~dkasil~~Ai~YIk~Lq~~ 158 (310)
+|.+|+.+||+||++||+.|..|++|||.+ ...|+||++||..||.|||.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999999999941 157999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.72 E-value=2.4e-09 Score=78.89 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-CCCCCCcchhHhHHHHHHHHHHH
Q 043618 112 VERNRRKQMKNYLSVLRSLMPPS-YVQRGDQASIVGGAINYVKELEQ 157 (310)
Q Consensus 112 ~ER~RR~~~n~~~~~LrslvP~~-~~~k~dkasil~~Ai~YIk~Lq~ 157 (310)
.||+|+..||+.|..||.+||.. ..+|++|..||..||+||..||.
T Consensus 21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 48899999999999999999972 24688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.41 E-value=4.7e-07 Score=69.21 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCCC--CCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHH
Q 043618 117 RKQMKNYLSVLRSLMPPS--YVQRGDQASIVGGAINYVKELEQLVQTLEVHKR 167 (310)
Q Consensus 117 R~~~n~~~~~LrslvP~~--~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~ 167 (310)
|..||++|..|..|||.+ ...|.+|.+||..|++||++||+.++.+.....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999973 235789999999999999999998887765443
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.32 E-value=7.9e-07 Score=69.92 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-CCCCCCcchhHhHHHHHHHHHHHHHH
Q 043618 113 ERNRRKQMKNYLSVLRSLMPPS-YVQRGDQASIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 113 ER~RR~~~n~~~~~LrslvP~~-~~~k~dkasil~~Ai~YIk~Lq~~v~ 160 (310)
||+|-..||+.|..||.+||.. ..+|..|..+|.-||+||..|++.++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999972 35688999999999999999998875
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.45 E-value=0.0027 Score=47.81 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=58.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHh
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRV 303 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i 303 (310)
.+.|.|.|+++||+|.+|...|-++|..|++++....++.+...+.+.+.+. ...++|.++|.++-...
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~---~~l~~l~~~L~~~~~~~ 73 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK---QDFTYLRNEFEAFGQTL 73 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC---CCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC---CCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999888887777777777652 25789999998877654
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.76 E-value=0.0088 Score=51.46 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=54.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGR 302 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~ 302 (310)
.+.|.|.|+++||++.+|...|.++|+.|+.+++.+..+.+...+.+.... ...++|+++|.++..+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~~~~~ 72 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP----SNITRVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC----CCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999998887665566665432 1467788888877654
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.28 E-value=0.0089 Score=44.23 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=42.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecC
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEE 282 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~ 282 (310)
.+.|+|.+.++||+|.+|..+|.+.++.|.++++...++.+...|.+.+.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~ 55 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN 55 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC
Confidence 357889999999999999999999999999999988766444556666543
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.13 E-value=0.023 Score=49.27 Aligned_cols=50 Identities=6% Similarity=0.074 Sum_probs=42.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEec
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVE 281 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~ 281 (310)
.+.|.|.|+.|||++..|..+|.++|+.|+.+++.+..+.+...+.+...
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 47899999999999999999999999999999999887755445555543
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.13 E-value=0.027 Score=48.83 Aligned_cols=70 Identities=11% Similarity=0.046 Sum_probs=54.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC------CEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhh
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD------NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQG 305 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~------~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~ 305 (310)
.+.|.|.|+.+||++..|-..|-++|+.|+.+...+.+ +.++..+.+.+.+ .. + ++|+++|..+..++.-
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~-~-~~l~~~l~~~a~~l~~ 168 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PL-Y-QEVVTALSRVEEEFGV 168 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GG-H-HHHHHHHHHHHHHHTC
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Cc-c-HHHHHHHHHHHHHcCe
Confidence 47899999999999999999999999999999999876 4444444444442 22 4 7888888888777643
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.94 E-value=0.055 Score=46.38 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=55.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--------CEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHh
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--------NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRV 303 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--------~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i 303 (310)
...|.|.|+.+||++.+|...|-+++++|..+...+.+ +.++..+.+.+.+ .. +.++|+++|..+..++
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~--~~-~~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--GC-NLMQLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--TS-CHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC--CC-CHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999998764 2333444444432 22 6889999999888776
Q ss_pred hhh
Q 043618 304 QGE 306 (310)
Q Consensus 304 ~~~ 306 (310)
.-+
T Consensus 170 ~~~ 172 (192)
T 1u8s_A 170 DVQ 172 (192)
T ss_dssp TCE
T ss_pred Cce
Confidence 543
No 25
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=94.11 E-value=0.29 Score=45.23 Aligned_cols=73 Identities=4% Similarity=-0.003 Sum_probs=55.6
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 230 ESNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 230 e~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
...+.|.|.|+.|||+..+|-..|-++|+.|+.++-.+. .+.++--+.+.+.+. . .+.++|.+++..+-.++.
T Consensus 4 ~~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~-~~~~~L~~~f~~la~~~~ 78 (288)
T 3obi_A 4 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-V-IPLASLRTGFGVIAAKFT 78 (288)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-C-CCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-C-CCHHHHHHHHHHHHHHcC
Confidence 346789999999999999999999999999999998643 465544444455443 2 368899999887766544
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=93.55 E-value=0.44 Score=44.37 Aligned_cols=71 Identities=6% Similarity=-0.032 Sum_probs=54.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
.+.|.|.|+.|||+...|-..|-++|+.|+.++-+.. .+.++--+.+.+++. . .+.++|.+++..+-.++.
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~-~~~~~L~~~l~~la~~l~ 94 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-P-FDLDGFREAFTPIAEEFS 94 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-S-SCHHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-C-CCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999998865 565443333333322 2 368899999887766654
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=93.50 E-value=0.41 Score=44.15 Aligned_cols=71 Identities=3% Similarity=-0.123 Sum_probs=54.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
..+.|.|.|+.+||+..+|-..|-++|+.|+.++-.+. .+.++--+.+..++ . .+.++|.+++..+-.++.
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~-~~~~~L~~~f~~la~~l~ 79 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--D-FDEAGFRAGLAERSEAFG 79 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--S-CCHHHHHHHHHHHHGGGT
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--C-CCHHHHHHHHHHHHHHcC
Confidence 35789999999999999999999999999999998853 45544444444433 2 368899998887765543
No 28
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=93.40 E-value=0.27 Score=46.69 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=55.9
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhh
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
..+.|.|.|+.|||+...|...|-++|..|+.++-...++.++-.+.+.+.+.. .+.++|.++|..+-.++.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~ 82 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV--ADGPALRHDVEAAIRKVG 82 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH--HTSHHHHHHHHHHHHHTT
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc--CCHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999999999999999888866555555554321 135788888877655543
No 29
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=92.81 E-value=0.17 Score=43.11 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=48.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
..|.|...++||.|.+|...|...|+.|.++++.... +....+|.+. .+ .. ..+.|...|+++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d-~~-~leqI~kqL~Kl~ 69 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD-EK-VLEQIEKQLHKLV 69 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC-HH-HHHHHHHHHHHST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--cc-HH-HHHHHHHHHcCCC
Confidence 4688899999999999999999999999999997654 5555666655 22 11 3567777776654
No 30
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=92.74 E-value=0.61 Score=43.14 Aligned_cols=72 Identities=8% Similarity=-0.008 Sum_probs=53.3
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEec--CCcccCCHHHHHHHHHHHHHHhh
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVE--EGCHLRSMNEVAAAVYDMMGRVQ 304 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~--~~~~l~s~eeI~~aL~eil~~i~ 304 (310)
..+.|.|.|+.|||+..+|-..|-++|+.|+.++-.+. .+.++--+.+... + .. .+.++|.+++..+-.++.
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~-~~~~~L~~~f~~la~~~~ 84 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDA-DA-LRVDALRREFEPIAERFR 84 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC------CCHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcc-cC-CCHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999999999998853 4554433333333 2 12 368899988887766554
No 31
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=92.05 E-value=0.17 Score=43.11 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=49.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 233 ANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 233 ~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
-.|.|...++||.|.+|...|...|+.|.++++.... +....+|.+. .+ .. ..+.|...|++++.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d--~~-~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP--DE-IVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC--HH-HHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc--HH-HHHHHHHHhcCCCC
Confidence 4688899999999999999999999999999997553 5555666665 22 11 36777777776543
No 32
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=91.93 E-value=0.29 Score=42.85 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=50.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeC--CEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFD--NQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~--~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
.-.|.|..+++||.|.+|...|...|+.|.++++.... +....+|.+.-. .. .+++|.+.|.+++.
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~---e~-~ieqL~kQL~KLid 96 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD---DK-TIEQIEKQAYKLVE 96 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC---TT-HHHHHHHHHTTSTT
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC---HH-HHHHHHHHhcCcCc
Confidence 35788889999999999999999999999999997543 555566666522 22 37888888877543
No 33
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=91.65 E-value=0.42 Score=39.19 Aligned_cols=37 Identities=3% Similarity=0.114 Sum_probs=33.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCE
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQ 271 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~ 271 (310)
.|+|.|.+|+|+|.+|+.+|-+.++++..+++... +.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 58899999999999999999999999999999766 53
No 34
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=90.39 E-value=1.1 Score=41.32 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=48.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHh
Q 043618 231 SNANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRV 303 (310)
Q Consensus 231 ~~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i 303 (310)
..+.|.|.|+.|||+..+|-..|-++|+.|+.++-.+. .+.++--+.+..+. . +.++|.+++..+-.++
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~-~~~~L~~~f~~la~~~ 76 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV---A-GVNDFNSAFGKVVEKY 76 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC-------CHHHHHHHHHHGGG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC---C-CHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999998643 45444333333221 1 3447777776655443
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=90.00 E-value=0.81 Score=40.80 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=43.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe-----CCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF-----DNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~-----~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
.+.|.|.+.+|+|+|.+|+..|-+.+..|.+.+.... ++..... +++.+. ..++|.+.|.+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~----~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG----DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS----CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC----CHHHHHHHHhC
Confidence 3678999999999999999999999999999999885 3444333 666554 35666666553
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=79.82 E-value=12 Score=29.81 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=38.6
Q ss_pred EEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 235 IKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 235 IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
|-+.-+.+||.+.+++.+|.+.|+.|...-++..+......| ..+ +.+...++|++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i--~~~------d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI--RPS------NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE--EES------CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE--EeC------CHHHHHHHHHH
Confidence 455667899999999999999999997655543445443333 332 45666666665
No 37
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=78.24 E-value=15 Score=30.67 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=37.1
Q ss_pred EEeCCeEEEEEE-ecCCCChHHHHHHHHHhcCceEEEEEEEEe---CCEEEEEEEEEe
Q 043618 227 TMAESNANIKIL-STRYPKQLFKMVTGFHSLGLHVLHLNVATF---DNQVLYTFSVKV 280 (310)
Q Consensus 227 ~~~e~~~~IkI~-c~~r~g~L~~Il~aLeslgL~Vv~a~vst~---~~~vl~s~~~kv 280 (310)
....+-+.|.|. .+++||.+.+|+..|.+.++.|.....++. ++..-++|++..
T Consensus 10 a~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~ 67 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR 67 (178)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH
T ss_pred EecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc
Confidence 344566777774 577899999999999999976666554433 333344566553
No 38
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=71.73 E-value=26 Score=27.76 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=30.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe
Q 043618 234 NIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF 268 (310)
Q Consensus 234 ~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~ 268 (310)
.|.|..+++||.|.+|...|.+.|+.|....+...
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 56777889999999999999999999988877644
No 39
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=71.34 E-value=20 Score=29.44 Aligned_cols=39 Identities=5% Similarity=0.108 Sum_probs=32.0
Q ss_pred EEEeCCeEEEEEEecC---CCChHHHHHHHHHhcCceEEEEE
Q 043618 226 VTMAESNANIKILSTR---YPKQLFKMVTGFHSLGLHVLHLN 264 (310)
Q Consensus 226 V~~~e~~~~IkI~c~~---r~g~L~~Il~aLeslgL~Vv~a~ 264 (310)
|....+-+.|.|.... +||.+.+++.+|.+.++.|...+
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 3444566788888866 79999999999999999998854
No 40
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=70.17 E-value=12 Score=34.35 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=48.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCC-EEEEEEEEEecCCcccCCHHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTFSVKVEEGCHLRSMNEVAAAVYDM 299 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl~s~~~kv~~~~~l~s~eeI~~aL~ei 299 (310)
+..|-+..+++||.|.++|..|...|+.......-...+ ..-|.|.+.++... .-+.++.+|.++
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~---~d~~v~~aL~~L 265 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHR---EDQNVHNALENL 265 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCT---TSHHHHHHHHHH
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCC---CcHHHHHHHHHH
Confidence 344445557899999999999999999999999987754 35688888887642 124555555554
No 41
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=69.77 E-value=18 Score=29.69 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=36.8
Q ss_pred EEeCCeEEEEEEe-cCCCChHHHHHHHHHhcCceEEEEEEEEe---CCEEEEEEEEE
Q 043618 227 TMAESNANIKILS-TRYPKQLFKMVTGFHSLGLHVLHLNVATF---DNQVLYTFSVK 279 (310)
Q Consensus 227 ~~~e~~~~IkI~c-~~r~g~L~~Il~aLeslgL~Vv~a~vst~---~~~vl~s~~~k 279 (310)
....+-+.|.|.. +++||.+.+|+.+|.+.++.|.....+.. .+..-.+|.+.
T Consensus 11 a~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 11 ALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 3345566777765 66899999999999999988877654322 23444556655
No 42
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=69.54 E-value=38 Score=31.61 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHhcCceEEEEEEEEeCCE-EEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 241 RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQ-VLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 241 ~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~-vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
++||.|.++|..|...|+......+-...+. .-|.|.+.++.. . .-..++.+|.++-
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~-~d~~v~~AL~~L~ 274 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA--P-WEERFRDALVEIA 274 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC--T-TSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC--c-CCHHHHHHHHHHH
Confidence 4799999999999999999999999887664 458999998664 2 2245666666653
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.22 E-value=5.8 Score=28.03 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043618 113 ERNRRKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 113 ER~RR~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
||++|....++.++.++ +..| ..||.+|+.+++.|+.+...+.
T Consensus 1 Ekr~rrrerNR~AA~rc--------R~rK-------k~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC--------RNRR-------RELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHH--------HHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH--------HHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777887775 2222 5777777777777777666554
No 44
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=66.38 E-value=15 Score=33.29 Aligned_cols=65 Identities=11% Similarity=0.247 Sum_probs=48.6
Q ss_pred CeEEEEEEe---cCCCChHHHHHHHHHhcCceEEEEEEEEeCC-EEEEEEEEEecCCcccCCHHHHHHHHHHH
Q 043618 231 SNANIKILS---TRYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTFSVKVEEGCHLRSMNEVAAAVYDM 299 (310)
Q Consensus 231 ~~~~IkI~c---~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl~s~~~kv~~~~~l~s~eeI~~aL~ei 299 (310)
++..|-+.. +++||.|.++|..|...|+.......-...+ ..-|.|.+.++ . . .-+.++.+|.++
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~--~-~d~~v~~aL~~L 253 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S--A-ITTDIKKVIAIL 253 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C--C-SCHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c--C-CcHHHHHHHHHH
Confidence 344555666 7899999999999999999999999987754 34588888887 3 2 224566666655
No 45
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=65.17 E-value=9.4 Score=24.62 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=21.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043618 144 IVGGAINYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 144 il~~Ai~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
.+.+--+||++|+++..+|+.-++-+.
T Consensus 4 tvkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 356677999999999999987766543
No 46
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=64.52 E-value=31 Score=29.03 Aligned_cols=67 Identities=10% Similarity=0.271 Sum_probs=46.8
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 225 EVTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 225 eV~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
+|...++-+.|.|... ..||.+.+++.+|.+.++.|.-.+ +.+- .+++-|++. ..+...++||+.+.
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei----~Is~vV~~~----d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEI----RISVLCRDT----ELDKAVVALHEAFG 158 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETT----EEEEEEEGG----GHHHHHHHHHHHHT
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCC----EEEEEEeHH----HHHHHHHHHHHHHc
Confidence 3445566778888764 579999999999999999988877 3344 233333332 35677778888763
No 47
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=64.45 E-value=31 Score=28.70 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=45.3
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 226 VTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 226 V~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
|+..++-+.|.|... .+||.+.+++.+|.+.++.|.-.+ +.... +++-|+.. ..+...++|++.+.
T Consensus 89 v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~----Is~vV~~~----d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 89 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIR----ISVLIRED----DLDAAARALHEQFQ 157 (178)
T ss_dssp EEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTE----EEEEEEGG----GHHHHHHHHHHHHT
T ss_pred EEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCe----EEEEEeHH----HHHHHHHHHHHHHc
Confidence 455567788888875 478999999999999999998754 44432 22333222 35666777777663
No 48
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=63.85 E-value=18 Score=33.65 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=47.3
Q ss_pred eEEEEEEec-CCCChHHHHHHHHHhcCceEEEEEEEEeCC-EEEEEEEEEecCCcccCCHHHHHHHHHHH
Q 043618 232 NANIKILST-RYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTFSVKVEEGCHLRSMNEVAAAVYDM 299 (310)
Q Consensus 232 ~~~IkI~c~-~r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl~s~~~kv~~~~~l~s~eeI~~aL~ei 299 (310)
+..|-+..+ ++||.|.++|..|...|+......+-...+ ..-|.|.+.++... .-+.++.+|.++
T Consensus 201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~---~d~~v~~aL~~L 267 (313)
T 3mwb_A 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHA---TDSRVADALAGL 267 (313)
T ss_dssp EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCT---TSHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCC---CcHHHHHHHHHH
Confidence 345555665 799999999999999999999999987654 33488888886532 224566666554
No 49
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=61.11 E-value=38 Score=27.72 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=44.2
Q ss_pred EEEEeCCeEEEEEEecC---CCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 225 EVTMAESNANIKILSTR---YPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 225 eV~~~e~~~~IkI~c~~---r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.|.+.++-+.|.|.... +||.+.+++.+|.+.++.|.-.+ +..- .+++-|++. ..+...++|++.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~----~is~vv~~~----d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEV----RISVIIPAE----YAEAALRAVHQAF 156 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSS----EEEEEEEGG----GHHHHHHHHHHHT
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCC----EEEEEEeHH----HHHHHHHHHHHHH
Confidence 45555667788888865 89999999999999999995543 3333 223333332 3556666776654
No 50
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=60.34 E-value=12 Score=23.82 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=27.0
Q ss_pred CCcchhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 043618 139 GDQASIVGGAINYVKELEQLVQTLEVHKRIH 169 (310)
Q Consensus 139 ~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~ 169 (310)
+.....|+++-+-|..|+.+++.|+.++..+
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999998865
No 51
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=58.63 E-value=22 Score=29.20 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=36.3
Q ss_pred EEeCCeEEEEEEe-cCCCChHHHHHHHHHhcCceEEEEEEEEe-CCEEEEEEEEE
Q 043618 227 TMAESNANIKILS-TRYPKQLFKMVTGFHSLGLHVLHLNVATF-DNQVLYTFSVK 279 (310)
Q Consensus 227 ~~~e~~~~IkI~c-~~r~g~L~~Il~aLeslgL~Vv~a~vst~-~~~vl~s~~~k 279 (310)
....+-+.|.|.. +++||.+.+|+..|.+.++.|.....+.. ++..-.+|.+.
T Consensus 20 a~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 20 AFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp EEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 3445667888874 78999999999999999988877764322 34333444443
No 52
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=52.87 E-value=65 Score=30.59 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=38.6
Q ss_pred EEeCCeEEEEEE-ecCCCChHHHHHHHHHhcCceEEEEEEEEe---CCEEEEEEEEE
Q 043618 227 TMAESNANIKIL-STRYPKQLFKMVTGFHSLGLHVLHLNVATF---DNQVLYTFSVK 279 (310)
Q Consensus 227 ~~~e~~~~IkI~-c~~r~g~L~~Il~aLeslgL~Vv~a~vst~---~~~vl~s~~~k 279 (310)
....+-+.|.|. .+.++|.+.+|+..|.+.++.|.....++. ++..-.+|++.
T Consensus 259 ~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 259 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 445667788888 577899999999999999999888764333 34334455554
No 53
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=52.52 E-value=71 Score=26.71 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=35.7
Q ss_pred EeCCeEEEEEEe-cCCCChHHHHHHHHHhcCceEEEEEEEEe---CCEEEEEEEEE
Q 043618 228 MAESNANIKILS-TRYPKQLFKMVTGFHSLGLHVLHLNVATF---DNQVLYTFSVK 279 (310)
Q Consensus 228 ~~e~~~~IkI~c-~~r~g~L~~Il~aLeslgL~Vv~a~vst~---~~~vl~s~~~k 279 (310)
...+-+.|.|.. +.+||.+.+|+..|.+.++.|....-+.. ++..-.+|++.
T Consensus 12 ~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 12 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp EECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 345556666643 56899999999999999988877654322 44444566655
No 54
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=48.03 E-value=17 Score=23.75 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 043618 150 NYVKELEQLVQTLEVHKRIHIL 171 (310)
Q Consensus 150 ~YIk~Lq~~v~~L~~~~~~~~~ 171 (310)
.|+-+|+.++++|+.+..+++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888877776654
No 55
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=47.53 E-value=78 Score=22.92 Aligned_cols=56 Identities=9% Similarity=0.145 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhc----CceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 245 QLFKMVTGFHSL----GLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 245 ~L~~Il~aLesl----gL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.+.+|.+.|.+. -.+|.++.+-..+...+.++++.+.+.-.+...++|...+.+.+
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l 70 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERAL 70 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHH
Confidence 455666777665 48899999988888888899999866532222344555554444
No 56
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=45.84 E-value=18 Score=25.12 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 043618 149 INYVKELEQLVQTLEVHKRIHIL 171 (310)
Q Consensus 149 i~YIk~Lq~~v~~L~~~~~~~~~ 171 (310)
-.||..|+++++.|+..+..+..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999998887753
No 57
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=44.57 E-value=67 Score=27.64 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=37.9
Q ss_pred EeCCeEEEEEE-ecCCCChHHHHHHHHHhcCceEEEEE--EEEe-CCEEEEEEEEEe
Q 043618 228 MAESNANIKIL-STRYPKQLFKMVTGFHSLGLHVLHLN--VATF-DNQVLYTFSVKV 280 (310)
Q Consensus 228 ~~e~~~~IkI~-c~~r~g~L~~Il~aLeslgL~Vv~a~--vst~-~~~vl~s~~~kv 280 (310)
...+.+.|.|. .+.+||.+.+|+.+|.+.++.|-... ++.. ++....+|++.-
T Consensus 31 ~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 31 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred ccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 44566777775 47799999999999999998776654 3332 455667777763
No 58
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=44.22 E-value=22 Score=34.47 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=47.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEeCC-EEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATFDN-QVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~-~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
...|-+..+++||.|.++|..|...|+.+.+..+-...+ ..-|.|-+.++ . . .-+.++++|.++-.
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h--~-~d~~v~~AL~eL~~ 100 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-K--R-TKPVLGSIIKSLRN 100 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-G--G-GHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-e--C-CCHHHHHHHHHHHh
Confidence 344555557889999999999999999999999987643 34588888876 2 2 23346666655533
No 59
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=44.20 E-value=14 Score=25.85 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043618 149 INYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 149 i~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
-.||..|+++|+.|+..+..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999887653
No 60
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=43.80 E-value=59 Score=25.42 Aligned_cols=61 Identities=7% Similarity=0.073 Sum_probs=40.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhc---CceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSL---GLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAV 296 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLesl---gL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL 296 (310)
...+||.....+.+...|+++++.+ ..++ ..+-|..+..+-.++++.+....+ +++|.++|
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~S~eQ---v~aiY~~L 99 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINATHIEQ---VETLYEEL 99 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCSSHHH---HHHHHHHH
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEECCHHH---HHHHHHHH
Confidence 4678888888999999999999998 6776 556666666544555554433221 34455554
No 61
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=43.01 E-value=22 Score=24.39 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 043618 150 NYVKELEQLVQTLEVHKRIHIL 171 (310)
Q Consensus 150 ~YIk~Lq~~v~~L~~~~~~~~~ 171 (310)
.||.+|+.+|..|+.+...+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888776653
No 62
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=42.64 E-value=1.2e+02 Score=28.13 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=52.6
Q ss_pred CeEEEEEEecC-CCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHHHhhhh
Q 043618 231 SNANIKILSTR-YPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMGRVQGE 306 (310)
Q Consensus 231 ~~~~IkI~c~~-r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~~i~~~ 306 (310)
.+..+.+..+. +++++.+|...|.++++.+..+...+....+-+-|++.+.. .+..++.+++.++.....-+
T Consensus 100 ~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~----~~~~~l~~~l~~l~~~~~vD 172 (415)
T 3p96_A 100 STHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPP----GADEALRTALNRVSSEEHVD 172 (415)
T ss_dssp CSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCT----TCHHHHHHHHHHHHHHHTCE
T ss_pred CcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCC----CCHHHHHHHHHHHhhhcCcC
Confidence 35566777777 78999999999999999998888776444444446665544 25778888888887765544
No 63
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=42.55 E-value=98 Score=29.31 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=45.0
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 226 VTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 226 V~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
|.+.++-+.|.|... .+||.+.+++.+|.+.++.|.-.+ +... .+++-|++. ..++..++||+.+.
T Consensus 338 v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~----~is~vV~~~----d~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 338 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEI----RISVLIRED----DLDAAARALHEQFQ 406 (421)
T ss_dssp EEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETT----EEEEEEEGG----GHHHHHHHHHHHTT
T ss_pred EEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCC----eEEEEEeHH----HHHHHHHHHHHHHh
Confidence 444456677888874 579999999999999999998443 4444 233334332 35677778887663
No 64
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=40.74 E-value=65 Score=27.22 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=39.5
Q ss_pred ceEEEEEeCCeEEEEEEecCC------CChHHHHHHHHHhcCceEEEEEEEEe
Q 043618 222 ADIEVTMAESNANIKILSTRY------PKQLFKMVTGFHSLGLHVLHLNVATF 268 (310)
Q Consensus 222 ~~VeV~~~e~~~~IkI~c~~r------~g~L~~Il~aLeslgL~Vv~a~vst~ 268 (310)
.+|.|++.++.+.|.+.+.+. ...|-+|-+.|.+.||.+..++|+..
T Consensus 101 l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 101 VHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp EEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred EEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 577778889999999999874 24588889999999999999999864
No 65
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=38.48 E-value=85 Score=23.70 Aligned_cols=56 Identities=5% Similarity=0.152 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcC--ceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 245 QLFKMVTGFHSLG--LHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 245 ~L~~Il~aLeslg--L~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
.+-+|...|.+.. .+|.++.+-..+..++.++++.+.+.-.+....+|...|.+.|
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L 68 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEM 68 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4566777787764 7788888888888788899999866532222334555554444
No 66
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.31 E-value=30 Score=25.05 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043618 150 NYVKELEQLVQTLEVHKRI 168 (310)
Q Consensus 150 ~YIk~Lq~~v~~L~~~~~~ 168 (310)
.||++|+.+|..|+.....
T Consensus 29 ~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5777777777777654443
No 67
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=35.03 E-value=1.4e+02 Score=28.77 Aligned_cols=67 Identities=12% Similarity=0.198 Sum_probs=46.2
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 226 VTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 226 V~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
|.+.++-+.|.|... .+||+..+++.+|.+.++.|.-.+-.+..-. +++-|++. ..+...++||+.+
T Consensus 368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~----Is~vV~~~----d~~~Av~aLH~~f 437 (446)
T 3tvi_A 368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEIN----VIVGVETV----DFEKAVKSIYNAF 437 (446)
T ss_dssp EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTE----EEEEEEGG----GHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCce----EEEEEcHH----HHHHHHHHHHHHH
Confidence 344455678888764 4799999999999999999987775555553 33344332 3566667777655
No 68
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=33.48 E-value=37 Score=20.50 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 043618 152 VKELEQLVQTLEVHK 166 (310)
Q Consensus 152 Ik~Lq~~v~~L~~~~ 166 (310)
+++||+++..|+...
T Consensus 15 vq~lq~r~drle~tv 29 (32)
T 2akf_A 15 VQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 69
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=32.64 E-value=1e+02 Score=23.22 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=31.6
Q ss_pred eEEEEEEecCC--CChHHHHHHHHHhcCceEEEEEEEEe-CCEE
Q 043618 232 NANIKILSTRY--PKQLFKMVTGFHSLGLHVLHLNVATF-DNQV 272 (310)
Q Consensus 232 ~~~IkI~c~~r--~g~L~~Il~aLeslgL~Vv~a~vst~-~~~v 272 (310)
...|.|.|.+. ..+...|++.|+..++.+..+.+..+ ++.+
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~v 51 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNI 51 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCE
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeE
Confidence 36899999874 45688889999999999999995553 4434
No 70
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=32.33 E-value=1.7e+02 Score=22.49 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=40.4
Q ss_pred EEEEEeCCeEEEEEEecCCC---ChHHHHHHHHHhc-Cce-EEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 224 IEVTMAESNANIKILSTRYP---KQLFKMVTGFHSL-GLH-VLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 224 VeV~~~e~~~~IkI~c~~r~---g~L~~Il~aLesl-gL~-Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
+||+..+++-+..|...+.+ ..=.++|..|.++ +|. =.-.+++..+. .++.+|....+-.+..+++++.-.
T Consensus 1 ~ev~~~~deeygYIvt~~~~l~~~~G~~l~~~la~~l~l~~~~F~~isV~g~----aVTFrV~~N~~n~taadVA~~a~~ 76 (99)
T 4hti_A 1 MEVQPSEEEARGYIVTDRDPLRPEEGRRLVEDVARLLQVPSSAFADVEVLGP----AVTFKVSANVQNVTTEDVEKATVD 76 (99)
T ss_dssp ---------CCEEEEESCSSCCHHHHHHHHHHHHHHTTCCGGGEEEEEEETT----EEEEEECCCTTCCCHHHHHHHHHH
T ss_pred CccccCCcceeEEEEECCCCCCHHHHHHHHHHHHHHhCCchhheeeeeecCc----eEEEEeccCCCCCCHHHHHHHHHH
Confidence 35565555544444444433 2234455555433 443 22445555666 334455444444479999988888
Q ss_pred HHHHhhhhccC
Q 043618 299 MMGRVQGEAAF 309 (310)
Q Consensus 299 il~~i~~~~~~ 309 (310)
+-..|+.+--+
T Consensus 77 ~K~~Le~~tG~ 87 (99)
T 4hti_A 77 NKDKLEETSGL 87 (99)
T ss_dssp THHHHHHHHSS
T ss_pred HHHHHHHhhCe
Confidence 88888877443
No 71
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=30.68 E-value=2.2e+02 Score=27.71 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=43.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCceEEEEEEEEe--CCEEEEEEEEEecCCcccCCHHHHHHHHHH
Q 043618 232 NANIKILSTRYPKQLFKMVTGFHSLGLHVLHLNVATF--DNQVLYTFSVKVEEGCHLRSMNEVAAAVYD 298 (310)
Q Consensus 232 ~~~IkI~c~~r~g~L~~Il~aLeslgL~Vv~a~vst~--~~~vl~s~~~kv~~~~~l~s~eeI~~aL~e 298 (310)
...|-+.-+.+||.+.+|...|-+.++.|-+.++... ++..+..+. +.+. + .+++...|.+
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~--vd~~--~--~~~~l~~l~~ 516 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLR--LDQD--V--PDDVRTAIAA 516 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEE--ESSC--C--CHHHHHHHHH
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEE--ECCC--C--CHHHHHHHhc
Confidence 3466677788999999999999999999999999875 455554444 3332 2 3455555554
No 72
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=29.87 E-value=2.2e+02 Score=24.26 Aligned_cols=67 Identities=10% Similarity=0.267 Sum_probs=46.1
Q ss_pred EEEEeCCeEEEEEEe---cCCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 225 EVTMAESNANIKILS---TRYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 225 eV~~~e~~~~IkI~c---~~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
+|...++-+.|.|.- +.+||...+++.+|-+.++.|.-.+ +..- .+++-|++. ..+.-.++||+.+.
T Consensus 108 ~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tSEi----~IS~vV~~~----d~~~Av~aLH~~F~ 177 (200)
T 4go7_X 108 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEI----RISVLCRDT----ELDKAVVALHEAFG 177 (200)
T ss_dssp EEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--ECSS----EEEEEEEGG----GHHHHHHHHHHHHT
T ss_pred eEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--ccCC----EEEEEEeHH----HHHHHHHHHHHHhC
Confidence 344445566777766 4478999999999999999888775 3333 344445443 36677788888775
No 73
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=29.68 E-value=1.9e+02 Score=25.46 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcC--ceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 245 QLFKMVTGFHSLG--LHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 245 ~L~~Il~aLeslg--L~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
..-+|.+.+++.. .+|.+..+-..+...+.++++.++++..+...++|.+.+.+.+.
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~ 265 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAIL 265 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 4667777777764 78889988888887777899998776433334556666665554
No 74
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=28.85 E-value=77 Score=25.54 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=41.5
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 225 EVTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 225 eV~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
+|+..++-+.|.|... .+||.+.+++.+|. ++.|.-.+-.+.+-. +++-+++. ..+...++||+.+.
T Consensus 81 ~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~----is~vv~~~----d~~~a~~~Lh~~f~ 150 (157)
T 3mah_A 81 DVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYN----VSVLVKAE----DKKKALIALSNKLF 150 (157)
T ss_dssp EEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSC----EEEEEEGG----GHHHHHHHHHHHHH
T ss_pred eEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCE----EEEEEcHH----HHHHHHHHHHHHHh
Confidence 3444456678887764 47899999999999 777766554344432 23333332 35667777887664
No 75
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=28.12 E-value=69 Score=18.72 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=14.8
Q ss_pred CCcchhHhHHHHHHHHHHH
Q 043618 139 GDQASIVGGAINYVKELEQ 157 (310)
Q Consensus 139 ~dkasil~~Ai~YIk~Lq~ 157 (310)
+....+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4567789999999987665
No 76
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.35 E-value=54 Score=22.99 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043618 149 INYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 149 i~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
..|+.+|+.+++.|+.+...+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776666554
No 77
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=27.11 E-value=1.3e+02 Score=28.95 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=43.9
Q ss_pred EEEeCCeEEEEEEecC---CCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 226 VTMAESNANIKILSTR---YPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 226 V~~~e~~~~IkI~c~~---r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
|.+.++-+.|.|.... +||.+.+++.+|.+.++.|.-.+-.+..-. +++-|++. ..+...++||+.+
T Consensus 398 v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtSe~~----Is~vV~~~----d~~~Av~aLh~~f 467 (473)
T 3c1m_A 398 VSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVN----ISFVIDEK----DLLNCVRKLHEKF 467 (473)
T ss_dssp EEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSCSSE----EEEEEEGG----GHHHHHHHHHHHH
T ss_pred EEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCCCce----EEEEEcHH----HHHHHHHHHHHHH
Confidence 3444556788888754 789999999999999999954443344442 23333332 3566777777765
No 78
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.39 E-value=50 Score=24.23 Aligned_cols=22 Identities=18% Similarity=-0.022 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043618 149 INYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 149 i~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
-.||..|+.+++.|+..+..+.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4699999999999999888754
No 79
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.06 E-value=76 Score=23.62 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043618 145 VGGAINYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 145 l~~Ai~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
|..||+-|.-||..+++|+.+...+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999888776643
No 80
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.02 E-value=24 Score=25.14 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 043618 149 INYVKELEQLVQTLEVHKRIH 169 (310)
Q Consensus 149 i~YIk~Lq~~v~~L~~~~~~~ 169 (310)
-.||..|+.+|..||..+..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 379999999999998766654
No 81
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.84 E-value=60 Score=22.43 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043618 149 INYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 149 i~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
..||.+|+.++..|+.+...+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666555543
No 82
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.56 E-value=1.2e+02 Score=23.07 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 043618 145 VGGAINYVKELEQLVQTLEVHK 166 (310)
Q Consensus 145 l~~Ai~YIk~Lq~~v~~L~~~~ 166 (310)
.+.|=+||..|.++++-|+...
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 5677889999999999998754
No 83
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=23.49 E-value=2.6e+02 Score=27.91 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=47.6
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHHH
Q 043618 225 EVTMAESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMMG 301 (310)
Q Consensus 225 eV~~~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil~ 301 (310)
+|...++-+.|.|... .+||.+.+++.+|.+.++.|.-.+ +..- .+++-+.+. ..+...++||+.+.
T Consensus 348 ~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe~----~Is~vI~~~----d~~~Av~aLh~~f~ 417 (600)
T 3l76_A 348 EIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEV----KVSCVIDQR----DADRAIAALSNAFG 417 (600)
T ss_dssp EEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECSS----EEEEEEEGG----GHHHHHHHHHHHTT
T ss_pred eeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCCC----EEEEEEcHH----HHHHHHHHHHHhhc
Confidence 4455577788888875 479999999999999999998776 3333 333444332 35677778887764
No 84
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=22.80 E-value=84 Score=17.87 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=12.9
Q ss_pred hhHhHHHHHHHHHHHHHH
Q 043618 143 SIVGGAINYVKELEQLVQ 160 (310)
Q Consensus 143 sil~~Ai~YIk~Lq~~v~ 160 (310)
|-|-+|-+|+.+|.++++
T Consensus 4 sgliearkyleqlhrklk 21 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456677888888877665
No 85
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.55 E-value=68 Score=22.97 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 043618 149 INYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 149 i~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
-.||..|+++++.||..+..+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999888764
No 86
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.37 E-value=82 Score=19.80 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043618 152 VKELEQLVQTLEVHKRIH 169 (310)
Q Consensus 152 Ik~Lq~~v~~L~~~~~~~ 169 (310)
+++|+.+|++|-.++..+
T Consensus 3 MnQLE~KVEeLl~~~~~L 20 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHH
Confidence 456666666665555444
No 87
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=21.88 E-value=96 Score=25.36 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCC--CCCCCCcchhHhHHHHHHHHH
Q 043618 120 MKNYLSVLRSLMPPS--YVQRGDQASIVGGAINYVKEL 155 (310)
Q Consensus 120 ~n~~~~~LrslvP~~--~~~k~dkasil~~Ai~YIk~L 155 (310)
|+=.|..|+.++|.- ...+.-|.-||..|.+++..|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 567899999999971 235667889999999988766
No 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.26 E-value=84 Score=21.55 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 043618 150 NYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 150 ~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
.|+..|+.+++.|+.+...+.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665555443
No 89
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.57 E-value=2e+02 Score=21.54 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 043618 117 RKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 117 R~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~~~~~~~ 170 (310)
|++..++|..||.=+ ..=|..-++-|+.|+..+..++..+..+.
T Consensus 35 rqkekEqL~~LKkkl----------~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 35 RARAKEQLAALKKHK----------ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777788888888532 22355666777777777777777666654
No 90
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=20.47 E-value=82 Score=25.37 Aligned_cols=39 Identities=15% Similarity=0.019 Sum_probs=29.8
Q ss_pred EEeCCeEEEEEEecC---CCChHHHHHHHHHhcCceEEEEEE
Q 043618 227 TMAESNANIKILSTR---YPKQLFKMVTGFHSLGLHVLHLNV 265 (310)
Q Consensus 227 ~~~e~~~~IkI~c~~---r~g~L~~Il~aLeslgL~Vv~a~v 265 (310)
....+-+.|.|.... .+|.+.+|+.+|.+.++.|.....
T Consensus 13 a~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~ 54 (157)
T 3mah_A 13 AAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT 54 (157)
T ss_dssp EEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC
T ss_pred EecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe
Confidence 334455788888654 578899999999999998877663
No 91
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.14 E-value=1e+02 Score=19.04 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 043618 152 VKELEQLVQTLEVHKRIHI 170 (310)
Q Consensus 152 Ik~Lq~~v~~L~~~~~~~~ 170 (310)
+++|+.+|++|-.++..++
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4566666666655554443
No 92
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=20.10 E-value=1.8e+02 Score=28.01 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=41.2
Q ss_pred eCCeEEEEEEec---CCCChHHHHHHHHHhcCceEEEEEEEEeCCEEEEEEEEEecCCcccCCHHHHHHHHHHHH
Q 043618 229 AESNANIKILST---RYPKQLFKMVTGFHSLGLHVLHLNVATFDNQVLYTFSVKVEEGCHLRSMNEVAAAVYDMM 300 (310)
Q Consensus 229 ~e~~~~IkI~c~---~r~g~L~~Il~aLeslgL~Vv~a~vst~~~~vl~s~~~kv~~~~~l~s~eeI~~aL~eil 300 (310)
..+-+.|.|... .++|.+.+|+.+|.+.++.|....-.+... -.+|.+. +. ..++..++|++-+
T Consensus 315 ~~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~--~Is~~V~--~~----d~~~a~~~L~~~l 381 (473)
T 3c1m_A 315 IKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVS--EE----DVDKALKALKREF 381 (473)
T ss_dssp EEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEEE--GG----GHHHHHHHHHHHH
T ss_pred cCCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCC--EEEEEEe--ch----HHHHHHHHHHHHH
Confidence 345578888864 456899999999999999998877533332 2234443 22 2445555665443
No 93
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.05 E-value=42 Score=29.12 Aligned_cols=45 Identities=16% Similarity=0.457 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcchhHhHHHHHHHHHHHHHHHHHH
Q 043618 117 RKQMKNYLSVLRSLMPPSYVQRGDQASIVGGAINYVKELEQLVQTLEV 164 (310)
Q Consensus 117 R~~~n~~~~~LrslvP~~~~~k~dkasil~~Ai~YIk~Lq~~v~~L~~ 164 (310)
|..++.-...||-|+-.. =.....++.+||+|++.|..-...|+.
T Consensus 53 ~~Dl~~F~~QL~qL~~~~---i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDD---ISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHHHS---CSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555565555431 113467899999999999887776653
Done!