BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043621
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
           Angstroms Resolution
          Length = 639

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)

Query: 39  DAAKDTLNSDHDKVDKTKVAHAAGD----LLNAGSRYG 72
           DA  D +N  H K D TK  H AGD    ++NAG   G
Sbjct: 167 DAYLDYINGQHTKKDSTKGWHDAGDYNKYVVNAGITVG 204


>pdb|1OZU|A Chain A, Crystal Structure Of Familial Als Mutant S134n Of Human
           Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution
 pdb|1OZU|B Chain B, Crystal Structure Of Familial Als Mutant S134n Of Human
           Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution
          Length = 153

 Score = 25.0 bits (53), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 44  TLNSDHDKVDKTKVAHAAGDLLNAGSRYGNSKTNPSG 80
           +L+ DH  + +T V H   D L  G    N+KT  +G
Sbjct: 105 SLSGDHXIIGRTLVVHEKADDLGKGGNEENTKTGNAG 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.125    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,445,439
Number of Sequences: 62578
Number of extensions: 129683
Number of successful extensions: 232
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 52
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 45 (21.9 bits)