BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043621
         (103 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ZBH5|DCDA_STRCO Diaminopimelate decarboxylase OS=Streptomyces coelicolor (strain
           ATCC BAA-471 / A3(2) / M145) GN=lysA PE=3 SV=1
          Length = 440

 Score = 28.9 bits (63), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 50  DKVDKTKVAHAAGDLLNAGSRYGNSKTNPSGGHKDSGGVYEDYLKIAEGLIRKH 103
           D+V +    H     +N G  +G+S+   +GG     G++ ++L+ +  L+ +H
Sbjct: 135 DQVGRAAPGHPVWIRINPGFGHGHSRKTNTGGEHSKHGIWHEHLEESLALVDRH 188


>sp|P50023|DNAK_THEAC Chaperone protein DnaK OS=Thermoplasma acidophilum (strain ATCC
           25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
           GN=dnaK PE=3 SV=2
          Length = 613

 Score = 28.9 bits (63), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 8   HQYSEYDKSGKPAKNHQPSNAELLSSAKLVADAAKDTLNSDHDKVDK 54
            QY+E D+  K          ELL++A+ +A + + TLN   DKVDK
Sbjct: 496 EQYAEQDRKAK-------EQIELLNNAESLAYSVEKTLNDAGDKVDK 535


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.125    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,790,103
Number of Sequences: 539616
Number of extensions: 1603590
Number of successful extensions: 2566
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2556
Number of HSP's gapped (non-prelim): 27
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)