Query 043621
Match_columns 103
No_of_seqs 29 out of 31
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 11:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qko_A Possible transcriptiona 76.2 1.4 4.9E-05 28.8 2.1 58 1-62 1-59 (215)
2 1u6h_B Talin; protein-protein 58.4 5.9 0.0002 22.3 1.9 15 29-43 7-21 (31)
3 1u89_A Talin 1, talin; 4-helix 42.5 37 0.0013 24.3 4.5 46 27-72 69-128 (139)
4 3v62_C ATP-dependent DNA helic 38.9 5.4 0.00018 26.4 -0.4 41 27-68 11-51 (69)
5 3kw6_A 26S protease regulatory 33.4 65 0.0022 19.0 4.0 37 26-65 38-74 (78)
6 2l7a_A Talin-1; vinculin, bund 26.8 75 0.0026 22.4 3.9 16 57-72 83-98 (131)
7 2i7u_A Four-alpha-helix bundle 25.3 59 0.002 20.8 2.8 13 54-66 15-27 (62)
8 2krk_A 26S protease regulatory 24.7 1.1E+02 0.0036 19.0 4.0 32 26-60 46-77 (86)
9 4gzl_A RAS-related C3 botulinu 23.1 17 0.0006 24.0 0.0 9 1-9 1-9 (204)
10 2dzn_B 26S protease regulatory 22.8 82 0.0028 18.9 3.1 37 24-63 31-67 (82)
11 3r4i_A Citrate lyase; TIM beta 20.7 1.1E+02 0.0038 23.6 4.1 50 24-75 267-320 (339)
12 3aji_B S6C, proteasome (prosom 20.6 1.4E+02 0.0049 17.6 4.5 37 25-64 35-71 (83)
No 1
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=76.21 E-value=1.4 Score=28.82 Aligned_cols=58 Identities=19% Similarity=0.117 Sum_probs=21.4
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCChHHHHhhhHHHHHHHHHhhcccc-cccchhhHhhhHH
Q 043621 1 MTSPPKPHQYSEYDKSGKPAKNHQPSNAELLSSAKLVADAAKDTLNSDH-DKVDKTKVAHAAG 62 (103)
Q Consensus 1 ~~spp~~hq~ss~~~g~~~~~~~~pSs~eL~sSAKlVaeAAqsa~~~es-ekvDK~kVAgAAa 62 (103)
|+|+++|++.++...-.++.. +++-.. ..=.-+.+||...|..+. +.+--..||.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-R~~r~~---~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~ag 59 (215)
T 2qko_A 1 MGSSHHHHHHSSGRENLYFQG-HMAQNP---ERRAALVNAAIEVLAREGARGLTFRAVDVEAN 59 (215)
T ss_dssp ---------------------------C---HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSS
T ss_pred CCCccccccccchhhhhhhcc-cccccH---HHHHHHHHHHHHHHHHhChhhccHHHHHHHcC
Confidence 789999998877665553331 222111 223456788888888766 7777777777763
No 2
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=58.41 E-value=5.9 Score=22.26 Aligned_cols=15 Identities=53% Similarity=0.731 Sum_probs=12.3
Q ss_pred HHHhhhHHHHHHHHH
Q 043621 29 ELLSSAKLVADAAKD 43 (103)
Q Consensus 29 eL~sSAKlVaeAAqs 43 (103)
-|+..||.|+||...
T Consensus 7 rLl~aak~vaeata~ 21 (31)
T 1u6h_B 7 KLLSAAKILADATAK 21 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 588999999888765
No 3
>1u89_A Talin 1, talin; 4-helix bundle, LEFT-handed, structural protein; NMR {Mus musculus} SCOP: a.216.1.1
Probab=42.53 E-value=37 Score=24.35 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=30.5
Q ss_pred hHHHHhhhHHHHHHHHHhhc---ccccc---c-------ch-hhHhhhHHhHHhhhhhhc
Q 043621 27 NAELLSSAKLVADAAKDTLN---SDHDK---V-------DK-TKVAHAAGDLLNAGSRYG 72 (103)
Q Consensus 27 s~eL~sSAKlVaeAAqsa~~---~esek---v-------DK-~kVAgAAaDlL~Aas~YG 72 (103)
..|++..||+|+.|+..-++ .+-++ . +- ..||.|.+.+.+||..+-
T Consensus 69 ~~eMvrqak~Laqat~~LV~~iK~eAe~~~D~~~q~rLL~AAk~lAdATa~mVeAAk~~a 128 (139)
T 1u89_A 69 AGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAA 128 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999977665332 22221 1 11 248999999999987654
No 4
>3v62_C ATP-dependent DNA helicase SRS2, proliferating cell nuclear antigen; ubiquitin-like protein PCNA; HET: MLY; 2.90A {Saccharomyces cerevisiae}
Probab=38.89 E-value=5.4 Score=26.44 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=3.7
Q ss_pred hHHHHhhhHHHHHHHHHhhcccccccchhhHhhhHHhHHhhh
Q 043621 27 NAELLSSAKLVADAAKDTLNSDHDKVDKTKVAHAAGDLLNAG 68 (103)
Q Consensus 27 s~eL~sSAKlVaeAAqsa~~~esekvDK~kVAgAAaDlL~Aa 68 (103)
|--++++||++|+|++..-.+.+.||-| ....---||+...
T Consensus 11 nRPIltnAK~LADA~rk~~~~~~~kvKk-e~~~~q~DIfsqL 51 (69)
T 3v62_C 11 NRPIISNAKFLADAAMKKTQKFSKKVKN-EPASSQMDIFSQL 51 (69)
T ss_dssp ---------------------------------CBCCHHHHH
T ss_pred CcchhhhhHHHHHHHhcccccccccccc-CCCcchhhHHHHH
Confidence 4557899999999999765554455433 2222333554433
No 5
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=33.41 E-value=65 Score=18.96 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=25.6
Q ss_pred ChHHHHhhhHHHHHHHHHhhcccccccchhhHhhhHHhHH
Q 043621 26 SNAELLSSAKLVADAAKDTLNSDHDKVDKTKVAHAAGDLL 65 (103)
Q Consensus 26 Ss~eL~sSAKlVaeAAqsa~~~esekvDK~kVAgAAaDlL 65 (103)
|.+||.+ |+-+|+..+++.....|...-+-.|...++
T Consensus 38 SGADi~~---l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 38 SGAEVKG---VCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CHHHHHH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4566654 888999999988777777665555554443
No 6
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=26.76 E-value=75 Score=22.36 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=9.3
Q ss_pred HhhhHHhHHhhhhhhc
Q 043621 57 VAHAAGDLLNAGSRYG 72 (103)
Q Consensus 57 VAgAAaDlL~Aas~YG 72 (103)
|+.|.+.+.++|..|-
T Consensus 83 La~At~~MVeaAK~~A 98 (131)
T 2l7a_A 83 LADATAKMVEAAKGAA 98 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665553
No 7
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=25.29 E-value=59 Score=20.78 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=10.4
Q ss_pred hhhHhhhHHhHHh
Q 043621 54 KTKVAHAAGDLLN 66 (103)
Q Consensus 54 K~kVAgAAaDlL~ 66 (103)
-.|+|.-|+.||+
T Consensus 15 wkklaeeaaklle 27 (62)
T 2i7u_A 15 WKKLAEEAAKLLE 27 (62)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4678888888886
No 8
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=24.68 E-value=1.1e+02 Score=18.97 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=20.2
Q ss_pred ChHHHHhhhHHHHHHHHHhhcccccccchhhHhhh
Q 043621 26 SNAELLSSAKLVADAAKDTLNSDHDKVDKTKVAHA 60 (103)
Q Consensus 26 Ss~eL~sSAKlVaeAAqsa~~~esekvDK~kVAgA 60 (103)
|.+||.+ |+-||+..+++.....|...-+-.|
T Consensus 46 SGADL~~---l~~eAa~~alr~~~~~I~~~df~~A 77 (86)
T 2krk_A 46 SGAEVKG---VCTEAGMYALRERRVHVTQEDFEMA 77 (86)
T ss_dssp CHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CHHHHHH---HHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566654 7788888888876555555444333
No 9
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=23.12 E-value=17 Score=24.02 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 043621 1 MTSPPKPHQ 9 (103)
Q Consensus 1 ~~spp~~hq 9 (103)
|-|||.+||
T Consensus 1 ~~~~~~~~~ 9 (204)
T 4gzl_A 1 MGSSHHHHH 9 (204)
T ss_dssp ---------
T ss_pred CCccccccc
Confidence 344444443
No 10
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=22.79 E-value=82 Score=18.88 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=25.4
Q ss_pred CCChHHHHhhhHHHHHHHHHhhcccccccchhhHhhhHHh
Q 043621 24 QPSNAELLSSAKLVADAAKDTLNSDHDKVDKTKVAHAAGD 63 (103)
Q Consensus 24 ~pSs~eL~sSAKlVaeAAqsa~~~esekvDK~kVAgAAaD 63 (103)
.=|.+||.+ |+-+|+..+++.....|...-+-.|...
T Consensus 31 G~SGADi~~---l~~eAa~~ai~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 31 SLSGAVIAA---IMQEAGLRAVRKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp CCCHHHHHH---HHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCCHHHHHH---HHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 456788865 8889999999987666665544444333
No 11
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=20.70 E-value=1.1e+02 Score=23.63 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=35.1
Q ss_pred CCChHHHHhhhHHHHHHHH----HhhcccccccchhhHhhhHHhHHhhhhhhccCC
Q 043621 24 QPSNAELLSSAKLVADAAK----DTLNSDHDKVDKTKVAHAAGDLLNAGSRYGNSK 75 (103)
Q Consensus 24 ~pSs~eL~sSAKlVaeAAq----sa~~~esekvDK~kVAgAAaDlL~Aas~YGKLd 75 (103)
.||..|+--.-+||+ |++ .+|.-+..=||.. +..-|..||..|..||--.
T Consensus 267 ~Ps~~ei~~A~~il~-a~~~~g~G~~~~dG~MvD~p-~~~~A~~il~~a~~~g~~~ 320 (339)
T 3r4i_A 267 APRDEEITTATEILL-AAQSAQWGPTRYHDTLHDRA-SYRYYWSVLRRAQATGRAV 320 (339)
T ss_dssp SCCTHHHHHHHHHHH-HHHHTTTSCEEETTEEECHH-HHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHH-HHHHcCCCcEEECCEeecHH-HHHHHHHHHHHHHHhCCCC
Confidence 367666655555554 433 2566666679988 7778899999999998654
No 12
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=20.62 E-value=1.4e+02 Score=17.56 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=25.8
Q ss_pred CChHHHHhhhHHHHHHHHHhhcccccccchhhHhhhHHhH
Q 043621 25 PSNAELLSSAKLVADAAKDTLNSDHDKVDKTKVAHAAGDL 64 (103)
Q Consensus 25 pSs~eL~sSAKlVaeAAqsa~~~esekvDK~kVAgAAaDl 64 (103)
=|.+||.+ |+-+|+..++++....|...-+-.|...+
T Consensus 35 ~SGADi~~---l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 35 ISGADINS---ICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp CCHHHHHH---HHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred CCHHHHHH---HHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 45677765 88899999999876667665555544443
Done!