Query 043622
Match_columns 148
No_of_seqs 121 out of 1504
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 06:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 99.9 4.9E-27 1.1E-31 171.1 13.8 132 14-148 16-148 (489)
2 PLN02687 flavonoid 3'-monooxyg 99.9 3.9E-23 8.6E-28 152.9 12.1 120 23-147 33-153 (517)
3 PLN02394 trans-cinnamate 4-mon 99.9 4.6E-22 1E-26 146.9 14.5 130 13-147 19-150 (503)
4 PLN03234 cytochrome P450 83B1; 99.9 4E-22 8.7E-27 147.0 13.6 135 9-147 13-148 (499)
5 PLN02183 ferulate 5-hydroxylas 99.9 4.2E-22 9.1E-27 147.5 13.7 123 18-146 30-154 (516)
6 PLN00110 flavonoid 3',5'-hydro 99.9 6.5E-22 1.4E-26 146.1 14.1 123 20-147 27-150 (504)
7 PLN02971 tryptophan N-hydroxyl 99.9 5.9E-22 1.3E-26 147.5 12.8 123 22-147 55-179 (543)
8 PLN03112 cytochrome P450 famil 99.9 8.6E-22 1.9E-26 145.8 13.1 125 18-147 26-151 (514)
9 PTZ00404 cytochrome P450; Prov 99.9 1.1E-21 2.3E-26 144.3 10.9 120 21-147 26-145 (482)
10 PLN02966 cytochrome P450 83A1 99.9 5.3E-21 1.1E-25 141.2 13.2 128 16-147 21-149 (502)
11 PLN00168 Cytochrome P450; Prov 99.9 4.4E-21 9.5E-26 142.2 12.7 123 21-147 32-157 (519)
12 PLN02196 abscisic acid 8'-hydr 99.9 5.5E-21 1.2E-25 139.9 10.8 119 22-147 33-151 (463)
13 PLN02774 brassinosteroid-6-oxi 99.9 5.1E-21 1.1E-25 140.1 9.9 121 18-146 25-146 (463)
14 PLN02655 ent-kaurene oxidase 99.8 1.4E-20 3.1E-25 137.8 10.6 118 26-146 1-118 (466)
15 PLN02500 cytochrome P450 90B1 99.8 1.6E-20 3.4E-25 138.3 8.7 117 21-142 35-155 (490)
16 PLN02290 cytokinin trans-hydro 99.8 2.9E-20 6.3E-25 137.7 9.9 120 22-147 40-177 (516)
17 KOG0158 Cytochrome P450 CYP3/C 99.8 2.1E-19 4.6E-24 130.6 12.0 129 12-147 18-151 (499)
18 PLN02987 Cytochrome P450, fami 99.8 6.2E-19 1.3E-23 129.3 9.7 115 22-141 28-145 (472)
19 PLN03018 homomethionine N-hydr 99.8 2.8E-18 6.1E-23 127.5 13.3 117 24-142 40-158 (534)
20 PLN02302 ent-kaurenoic acid ox 99.8 3.9E-18 8.5E-23 125.6 12.8 120 21-147 39-164 (490)
21 PLN03141 3-epi-6-deoxocathaste 99.8 1.6E-18 3.5E-23 126.6 8.8 116 20-140 3-121 (452)
22 PLN03195 fatty acid omega-hydr 99.8 6E-18 1.3E-22 125.5 10.6 111 26-145 32-146 (516)
23 KOG0157 Cytochrome P450 CYP4/C 99.8 3.8E-18 8.2E-23 125.8 9.5 117 22-146 33-153 (497)
24 PF00067 p450: Cytochrome P450 99.7 2.2E-18 4.7E-23 124.9 3.4 116 26-146 1-119 (463)
25 PLN02169 fatty acid (omega-1)- 99.7 3.7E-16 8E-21 115.6 11.9 115 19-139 27-145 (500)
26 PLN02738 carotene beta-ring hy 99.6 1.2E-15 2.6E-20 115.3 9.4 105 37-147 143-247 (633)
27 PLN02936 epsilon-ring hydroxyl 99.6 1.2E-15 2.6E-20 112.6 8.4 110 27-141 15-127 (489)
28 PLN02648 allene oxide synthase 99.6 5.8E-16 1.3E-20 113.7 4.2 117 23-147 16-150 (480)
29 KOG0159 Cytochrome P450 CYP11/ 99.5 5.2E-14 1.1E-18 101.8 8.1 117 26-146 52-175 (519)
30 KOG0684 Cytochrome P450 [Secon 99.5 5.9E-13 1.3E-17 94.8 9.6 128 16-148 23-150 (486)
31 PLN02426 cytochrome P450, fami 99.3 2.1E-11 4.5E-16 90.5 11.8 101 33-141 49-151 (502)
32 COG2124 CypX Cytochrome P450 [ 98.5 3.4E-07 7.3E-12 66.7 6.9 96 48-147 24-124 (411)
33 PF13625 Helicase_C_3: Helicas 74.5 9.8 0.00021 23.2 4.4 39 48-88 76-114 (129)
34 PF15240 Pro-rich: Proline-ric 58.5 8.5 0.00019 25.1 1.9 14 1-14 1-14 (179)
35 PF05393 Hum_adeno_E3A: Human 58.2 24 0.00051 20.1 3.3 6 32-37 66-71 (94)
36 COG4471 Uncharacterized protei 54.1 40 0.00087 19.3 4.3 37 51-87 17-53 (90)
37 PF13893 RRM_5: RNA recognitio 51.2 31 0.00067 17.1 4.4 34 53-86 2-39 (56)
38 PF09902 DUF2129: Uncharacteri 42.8 58 0.0013 17.8 3.9 34 54-87 15-48 (71)
39 PF09926 DUF2158: Uncharacteri 42.6 33 0.00073 17.5 2.2 18 59-76 3-20 (53)
40 PRK02302 hypothetical protein; 41.4 70 0.0015 18.4 4.4 36 52-87 19-54 (89)
41 PF15330 SIT: SHP2-interacting 39.2 76 0.0017 18.9 3.7 11 32-42 45-55 (107)
42 PF02484 Rhabdo_NV: Rhabdoviru 36.6 85 0.0018 18.0 3.4 56 76-140 8-64 (111)
43 PRK02886 hypothetical protein; 36.5 85 0.0019 17.9 4.4 36 52-87 17-52 (87)
44 COG1707 ACT domain-containing 36.0 88 0.0019 20.4 3.8 37 45-81 153-194 (218)
45 PF15102 TMEM154: TMEM154 prot 35.9 16 0.00034 23.1 0.5 9 50-58 128-136 (146)
46 PHA01327 hypothetical protein 35.0 14 0.00031 17.7 0.2 20 109-129 12-31 (49)
47 COG5329 Phosphoinositide polyp 30.8 70 0.0015 25.1 3.2 26 47-72 294-319 (570)
48 PF07659 DUF1599: Domain of Un 29.3 19 0.00042 19.0 0.1 11 114-124 3-13 (61)
49 TIGR01661 ELAV_HUD_SF ELAV/HuD 28.4 2.3E+02 0.0049 20.3 5.7 39 48-86 282-329 (352)
50 PHA03049 IMV membrane protein; 27.5 1.1E+02 0.0024 16.5 2.9 7 23-29 30-36 (68)
51 cd01646 RT_Bac_retron_I RT_Bac 26.9 1.2E+02 0.0026 19.0 3.5 56 21-85 50-106 (158)
52 PF11616 EZH2_WD-Binding: WD r 25.6 31 0.00067 15.3 0.4 7 118-124 20-26 (30)
53 PF03460 NIR_SIR_ferr: Nitrite 23.5 1.3E+02 0.0027 15.7 3.5 40 46-85 23-63 (69)
54 PLN03120 nucleic acid binding 23.2 2.8E+02 0.006 19.6 5.7 49 48-96 17-71 (260)
55 PLN03134 glycine-rich RNA-bind 22.5 2.1E+02 0.0045 17.9 4.7 40 48-87 47-95 (144)
56 TIGR00673 cynS cyanate hydrata 21.6 68 0.0015 20.4 1.5 36 23-61 77-113 (150)
57 smart00362 RRM_2 RNA recogniti 20.9 1.3E+02 0.0027 14.8 5.1 39 48-86 12-57 (72)
58 COG1513 CynS Cyanate lyase [In 20.4 81 0.0018 19.5 1.6 37 23-61 77-113 (151)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=4.9e-27 Score=171.12 Aligned_cols=132 Identities=35% Similarity=0.603 Sum_probs=114.1
Q ss_pred HHHHhhcCCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCC
Q 043622 14 VATHLNNKIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFA 93 (148)
Q Consensus 14 ~~~~~~~~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~ 93 (148)
++....++..++||||+ ++|++||++++. ....+..+.++.++||+++.+++|..++|+++|+++++|++.+++..|.
T Consensus 16 ~~~~~~~~~~~lPPGP~-~lPiIGnl~~l~-~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa 93 (489)
T KOG0156|consen 16 LFFKKYRKRRNLPPGPP-PLPIIGNLHQLG-SLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFA 93 (489)
T ss_pred HHHHhccCCCCCCcCCC-CCCccccHHHcC-CCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCcccc
Confidence 33444445589999999 999999999994 3359999999999999999999999999999999999999999999999
Q ss_pred CCCc-hhhhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhcC
Q 043622 94 NRPR-ILLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKDE 148 (148)
Q Consensus 94 ~~~~-~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~ 148 (148)
.|+. ......+.+++.|++++.+|+.|+++||+...++|+...++++.. +..+|
T Consensus 94 ~Rp~~~~~~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~-~R~~E 148 (489)
T KOG0156|consen 94 DRPDPTATLKYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFME-IREEE 148 (489)
T ss_pred CCCCchhhHHHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHH-HHHHH
Confidence 9997 224456666678999998899999999999999999999999987 76443
No 2
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.90 E-value=3.9e-23 Score=152.95 Aligned_cols=120 Identities=33% Similarity=0.666 Sum_probs=99.5
Q ss_pred CCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchhhhh
Q 043622 23 KNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRILLGE 102 (148)
Q Consensus 23 ~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~ 102 (148)
.+.||||. ++|++|++..+ ..+.+..+.+|.++||+++++++++.++++++||+++++++.++...|.+++......
T Consensus 33 ~~~pPgp~-~~P~iG~~~~~--~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~ 109 (517)
T PLN02687 33 RPLPPGPR-GWPVLGNLPQL--GPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAE 109 (517)
T ss_pred CCCCccCC-CCCccccHHhc--CCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchh
Confidence 35789999 99999999887 4568889999999999999999999999999999999999998887888876554333
Q ss_pred hhccCCCceEeCCCCchHHHHHhhhh-hhcCChhhHhhhhhhhhhc
Q 043622 103 HLGYNSTSLVWSPYGSHWRNLRKLLS-HDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 103 ~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~f~~~~l~~~~~~~~~~ 147 (148)
.+...+.+++++.+|+.|+++||+++ + +|+.+++++|.+ ++++
T Consensus 110 ~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~-~fs~~~l~~~~~-~i~~ 153 (517)
T PLN02687 110 HMAYNYQDLVFAPYGPRWRALRKICAVH-LFSAKALDDFRH-VREE 153 (517)
T ss_pred hhccCCceeEeCCCCHHHHHHHHHHHHH-hCCHHHHHHhHH-HHHH
Confidence 33322345555555999999999999 7 899999999999 8764
No 3
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.89 E-value=4.6e-22 Score=146.85 Aligned_cols=130 Identities=27% Similarity=0.535 Sum_probs=100.8
Q ss_pred HHHHHhhcCCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCC
Q 043622 13 IVATHLNNKIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVF 92 (148)
Q Consensus 13 ~~~~~~~~~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~ 92 (148)
++......++.+.||||+ ..|++|++..+. ....+..+.+|+++||+++++++++.++|+++||+.+++++.++...|
T Consensus 19 ~~~~~~~~~~~~~pPgp~-~~p~~g~l~~~~-~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~ 96 (503)
T PLN02394 19 LLVSKLRGKKLKLPPGPA-AVPIFGNWLQVG-DDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEF 96 (503)
T ss_pred HHHHHHhcCcCCCCcCCC-CCCeeeeHHhcC-CCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccc
Confidence 333344456677899999 999999998774 444578999999999999999999999999999999999998877777
Q ss_pred CCCCchhhhhhh-ccCCCceEeCCCCchHHHHHhhhh-hhcCChhhHhhhhhhhhhc
Q 043622 93 ANRPRILLGEHL-GYNSTSLVWSPYGSHWRNLRKLLS-HDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~w~~~R~~~~-~~~f~~~~l~~~~~~~~~~ 147 (148)
.+++.......+ +.+.++++..+ |+.|+++||.++ + +|+++.++.+.+ .+++
T Consensus 97 ~~r~~~~~~~~~~g~~~~~l~~~~-g~~w~~~Rk~~~~~-~f~~~~l~~~~~-~i~~ 150 (503)
T PLN02394 97 GSRTRNVVFDIFTGKGQDMVFTVY-GDHWRKMRRIMTVP-FFTNKVVQQYRY-GWEE 150 (503)
T ss_pred cCCCCcchHhHhccCCCceeecCC-CHHHHHHHHHHHHH-hcChHHHHHhhH-HHHH
Confidence 766544333333 22223345444 999999999997 7 899999999887 6654
No 4
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.89 E-value=4e-22 Score=147.05 Aligned_cols=135 Identities=26% Similarity=0.456 Sum_probs=104.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhC
Q 043622 9 IALCIVATHLNNKIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKS 88 (148)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~ 88 (148)
++++++.....++..+.||||+ ++|++||+.++. ..+.+.++.+++++||+++++++++.++++++||+++++|+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~pPgp~-~~P~iG~~~~~~-~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~ 90 (499)
T PLN03234 13 AAAFFFLRSTTKKSLRLPPGPK-GLPIIGNLHQME-KFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQ 90 (499)
T ss_pred HHHHHHHHHhcCCCCCCCcCCC-CCCeeccHHhcC-CCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhC
Confidence 3334444555556678899999 999999998874 44677899999999999999999999999999999999999988
Q ss_pred CCCCCCCCchhhhhhhccCCCceEeCCCCchHHHHHhhh-hhhcCChhhHhhhhhhhhhc
Q 043622 89 DVVFANRPRILLGEHLGYNSTSLVWSPYGSHWRNLRKLL-SHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~-~~~~f~~~~l~~~~~~~~~~ 147 (148)
...|.+++...........+.++....+++.|+++|+.+ .+ +|++++++.+.+ ++++
T Consensus 91 ~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~-~f~~~~l~~~~~-~i~~ 148 (499)
T PLN03234 91 DLNFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVN-LFSPNRVASFRP-VREE 148 (499)
T ss_pred CccccCCCCchhhhhhccCCCccccCCCcHHHHHHHHHHHHH-hcCHHHHHHhHH-HHHH
Confidence 888888775533222222223444445589999999985 57 899999999988 7764
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=99.89 E-value=4.2e-22 Score=147.48 Aligned_cols=123 Identities=26% Similarity=0.513 Sum_probs=97.2
Q ss_pred hhcCCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCc
Q 043622 18 LNNKIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPR 97 (148)
Q Consensus 18 ~~~~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~ 97 (148)
+..+..+.||||+ ++|++|++..+ ....+..+.+|+++||+++++++++.++|+++||+++++|+.++...|..++.
T Consensus 30 ~~~~~~~~ppgp~-~~Pl~G~l~~~--~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~ 106 (516)
T PLN02183 30 RLRRRLPYPPGPK-GLPIIGNMLMM--DQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPA 106 (516)
T ss_pred hccCCCCCCcCCC-CCCeeccHHhc--CCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCc
Confidence 3344567899999 99999999776 44456789999999999999999999999999999999999988877877765
Q ss_pred hhhhhhhcc-CCCceEeCCCCchHHHHHhh-hhhhcCChhhHhhhhhhhhh
Q 043622 98 ILLGEHLGY-NSTSLVWSPYGSHWRNLRKL-LSHDILSNTSLQTLSCYIRK 146 (148)
Q Consensus 98 ~~~~~~~~~-~~~~~~~~~~g~~w~~~R~~-~~~~~f~~~~l~~~~~~~~~ 146 (148)
......... .+++++..+ |+.|+++|++ +++ +|+.+.++.+.+ +++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~-g~~w~~~Rr~~~~~-~f~~~~l~~~~~-~~~ 154 (516)
T PLN02183 107 NIAISYLTYDRADMAFAHY-GPFWRQMRKLCVMK-LFSRKRAESWAS-VRD 154 (516)
T ss_pred ccchhccccCCCceEeCCC-ChHHHHHHHHHHHH-hcCHHHHHHHHH-HHH
Confidence 432222221 224555555 9999999999 467 899999999888 754
No 6
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.89 E-value=6.5e-22 Score=146.08 Aligned_cols=123 Identities=27% Similarity=0.481 Sum_probs=98.9
Q ss_pred cCCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchh
Q 043622 20 NKIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRIL 99 (148)
Q Consensus 20 ~~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~ 99 (148)
.+..+.||||+ ++|++|+++.+ ....+..+.+++++||+++++++|+.++|+++||+++++++.++...|.+++...
T Consensus 27 ~~~~~~pPgp~-~~Pl~G~l~~~--~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~ 103 (504)
T PLN00110 27 KPSRKLPPGPR-GWPLLGALPLL--GNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNA 103 (504)
T ss_pred cccCCCcccCC-CCCeeechhhc--CCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCcc
Confidence 34567899999 99999998776 4557889999999999999999999999999999999999998887888877543
Q ss_pred hhh-hhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 100 LGE-HLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 100 ~~~-~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
... .....++++++.+ |+.|+++|+++++.+|+.+.++.+.+ ++.+
T Consensus 104 ~~~~~~~~~~~~l~~~~-g~~w~~~Rr~~~~~~f~~~~l~~~~~-~i~~ 150 (504)
T PLN00110 104 GATHLAYGAQDMVFADY-GPRWKLLRKLSNLHMLGGKALEDWSQ-VRTV 150 (504)
T ss_pred chhhhccCCCceeeCCC-CHHHHHHHHHHHHHhCCHHHHHHhhH-HHHH
Confidence 222 2222224555555 99999999999965899999999988 7643
No 7
>PLN02971 tryptophan N-hydroxylase
Probab=99.88 E-value=5.9e-22 Score=147.45 Aligned_cols=123 Identities=27% Similarity=0.517 Sum_probs=95.2
Q ss_pred CCCCCCCCCCCCceeeecchhcccC-chHHHHHHHHhhcC-CeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchh
Q 043622 22 IKNLPPNPFPALPIVGHLYLIFKNK-PLHRTLSQLSSKHG-PILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRIL 99 (148)
Q Consensus 22 ~~~~ppgp~~~~p~~G~~~~~~~~~-~~~~~~~~~~~~yg-~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~ 99 (148)
+.+.||||+ ++|++||++.+. .+ ..+..+.+|.++|| +++++++|+.++|+++||+++++++.+++..|.+++...
T Consensus 55 ~~~lPPGP~-~lPiiGnl~~l~-~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~ 132 (543)
T PLN02971 55 LHPLPPGPT-GFPIVGMIPAML-KNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTY 132 (543)
T ss_pred CCCCCcCCC-CCCcccchHHhc-cCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCccc
Confidence 446899999 999999998875 33 24678999999999 799999999999999999999999999888898887544
Q ss_pred hhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 100 LGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
....++.+..+++++.+|+.|+++||++++.+|+...++.+.+ ++++
T Consensus 133 ~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~-~~~~ 179 (543)
T PLN02971 133 AQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHD-NRAE 179 (543)
T ss_pred chhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHH-HHHH
Confidence 3333332212334444499999999999764677766767766 6543
No 8
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.88 E-value=8.6e-22 Score=145.78 Aligned_cols=125 Identities=32% Similarity=0.590 Sum_probs=98.2
Q ss_pred hhcCCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCc
Q 043622 18 LNNKIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPR 97 (148)
Q Consensus 18 ~~~~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~ 97 (148)
..++..+.||||. ++|++||+..+ ....+..+.+++++||+++++++++.++++++||+++++|+.++...|.+++.
T Consensus 26 ~~~~~~~~ppgp~-~~pl~G~~~~~--~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~ 102 (514)
T PLN03112 26 SMRKSLRLPPGPP-RWPIVGNLLQL--GPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPR 102 (514)
T ss_pred cccCCCCCccCCC-CCCeeeeHHhc--CCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCC
Confidence 3345567899999 99999999877 45678899999999999999999999999999999999999988888887765
Q ss_pred hhhhhhhccC-CCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 98 ILLGEHLGYN-STSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
.........+ +.+++.++ |+.|+++|+++...+|+.++++.+.+ .+.+
T Consensus 103 ~~~~~~~~~g~~~~~~~~~-g~~wk~~Rr~~~~~~f~~~~l~~~~~-~~~~ 151 (514)
T PLN03112 103 TLAAVHLAYGCGDVALAPL-GPHWKRMRRICMEHLLTTKRLESFAK-HRAE 151 (514)
T ss_pred cccceeeccCCCceEeCCC-CHHHHHHHHHHHHHhcCHHHHHHhhH-HHHH
Confidence 4322221122 23344445 99999999996533899999999988 7643
No 9
>PTZ00404 cytochrome P450; Provisional
Probab=99.87 E-value=1.1e-21 Score=144.27 Aligned_cols=120 Identities=27% Similarity=0.434 Sum_probs=98.9
Q ss_pred CCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchhh
Q 043622 21 KIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRILL 100 (148)
Q Consensus 21 ~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~ 100 (148)
++.+.+|||+ ++|++|++..+ ....+..+.+++++||++++++++++++|+++||+++++++.++...|.+++....
T Consensus 26 ~~~~~~pgp~-~~p~~G~~~~~--~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~ 102 (482)
T PTZ00404 26 IHKNELKGPI-PIPILGNLHQL--GNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPS 102 (482)
T ss_pred ccCCCCCCCC-CCCeeccHhhh--cccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcce
Confidence 4456678999 99999999887 45788999999999999999999999999999999999999877767776664432
Q ss_pred hhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 101 GEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
...... ++|+++.+ |+.|+++|+++++ .|+.+.++.+.+ .+++
T Consensus 103 ~~~~~~-~~~l~~~~-g~~w~~~Rk~~~~-~f~~~~l~~~~~-~i~~ 145 (482)
T PTZ00404 103 IKHGTF-YHGIVTSS-GEYWKRNREIVGK-AMRKTNLKHIYD-LLDD 145 (482)
T ss_pred eeeecc-CCceeccC-hHHHHHHHHHHHH-HHhhhccccHHH-HHHH
Confidence 211112 37888777 9999999999999 899999999988 7654
No 10
>PLN02966 cytochrome P450 83A1
Probab=99.86 E-value=5.3e-21 Score=141.23 Aligned_cols=128 Identities=29% Similarity=0.539 Sum_probs=100.0
Q ss_pred HHhhcCCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCC
Q 043622 16 THLNNKIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANR 95 (148)
Q Consensus 16 ~~~~~~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~ 95 (148)
.+..++..+.||||+ ++|++|++..+. ..+.+..+.+|+++||+++++++++.++|+++||+++++|+.++...|.++
T Consensus 21 ~~~~~~~~~~ppgp~-~~p~~G~l~~l~-~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~ 98 (502)
T PLN02966 21 QKPKTKRYKLPPGPS-PLPVIGNLLQLQ-KLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADR 98 (502)
T ss_pred hccccCCCCCCcCCC-CCCeeccHHhcC-CCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCC
Confidence 334445567899999 999999998874 456788999999999999999999999999999999999999877777766
Q ss_pred CchhhhhhhccCCCceEeCCCCchHHHHHhh-hhhhcCChhhHhhhhhhhhhc
Q 043622 96 PRILLGEHLGYNSTSLVWSPYGSHWRNLRKL-LSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~-~~~~~f~~~~l~~~~~~~~~~ 147 (148)
+..........+..++....+|+.|+++|++ +++ +|+.+.++.+.+ .+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~-~f~~~~l~~~~~-~i~~ 149 (502)
T PLN02966 99 PPHRGHEFISYGRRDMALNHYTPYYREIRKMGMNH-LFSPTRVATFKH-VREE 149 (502)
T ss_pred CCCccceeeccCcceeeeCCCCHHHHHHHHHHHHH-hcCHHHHHHHHH-HHHH
Confidence 5443222222222334344449999999999 777 899999999988 7654
No 11
>PLN00168 Cytochrome P450; Provisional
Probab=99.86 E-value=4.4e-21 Score=142.16 Aligned_cols=123 Identities=25% Similarity=0.490 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCCceeeecchhc-ccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchh
Q 043622 21 KIKNLPPNPFPALPIVGHLYLIF-KNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRIL 99 (148)
Q Consensus 21 ~~~~~ppgp~~~~p~~G~~~~~~-~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~ 99 (148)
+..+.||||+ ++|++|++..+. .....+..+.+|+++||+++++++|+.++++++||+++++++.++...|..++...
T Consensus 32 ~~~~lpPgp~-~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~ 110 (519)
T PLN00168 32 KGRRLPPGPP-AVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVA 110 (519)
T ss_pred CCCCCCcCCC-CCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCccc
Confidence 3457899999 999999987653 12346788999999999999999999999999999999999998888888777643
Q ss_pred hhhhhccCCCceEe-CCCCchHHHHHh-hhhhhcCChhhHhhhhhhhhhc
Q 043622 100 LGEHLGYNSTSLVW-SPYGSHWRNLRK-LLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 100 ~~~~~~~~~~~~~~-~~~g~~w~~~R~-~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
....++.+ .+++. ..+|+.|+++|| ++++ +|+.+++++|.+ .+++
T Consensus 111 ~~~~~~~~-~~~~~~~~~G~~Wk~~Rr~~~~~-~fs~~~l~~~~~-~~~~ 157 (519)
T PLN00168 111 SSRLLGES-DNTITRSSYGPVWRLLRRNLVAE-TLHPSRVRLFAP-ARAW 157 (519)
T ss_pred chhhhccC-CCceeCCCCCHHHHHHHHHHHHh-ccCHHHHHHHHH-HHHH
Confidence 33334322 33443 244999999987 6788 899999999999 7754
No 12
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.85 E-value=5.5e-21 Score=139.90 Aligned_cols=119 Identities=15% Similarity=0.274 Sum_probs=95.6
Q ss_pred CCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchhhh
Q 043622 22 IKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRILLG 101 (148)
Q Consensus 22 ~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~ 101 (148)
+.+.||||+ ++|++|++.++. .++.+..+.+++++||+++++++++.++|+++||+++++|+.++...|..... ...
T Consensus 33 ~~~~Ppgp~-~~P~iG~~~~~~-~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~~~~~-~~~ 109 (463)
T PLN02196 33 KLPLPPGTM-GWPYVGETFQLY-SQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFKPTFP-ASK 109 (463)
T ss_pred CCCCCCCCC-CCCccchHHHHH-hcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcccccCc-hHH
Confidence 345678888 899999988765 66788999999999999999999999999999999999999877766632211 111
Q ss_pred hhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 102 EHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 102 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
... .+..++++++ |+.|+++||++++ .|++++++.+.+ .+++
T Consensus 110 ~~~-~g~~~l~~~~-g~~w~~~Rk~l~~-~f~~~~l~~~~~-~i~~ 151 (463)
T PLN02196 110 ERM-LGKQAIFFHQ-GDYHAKLRKLVLR-AFMPDAIRNMVP-DIES 151 (463)
T ss_pred HHH-cCcccccccC-cHHHHHHHHHHHH-hcChHHHHHHHH-HHHH
Confidence 222 2225777777 9999999999999 899999999998 7653
No 13
>PLN02774 brassinosteroid-6-oxidase
Probab=99.85 E-value=5.1e-21 Score=140.09 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=95.5
Q ss_pred hhcCCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCc
Q 043622 18 LNNKIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPR 97 (148)
Q Consensus 18 ~~~~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~ 97 (148)
.+++..+.||||+ ++|++|++..+ ..+....+.+++++||+++++++++.++++++||+++++++.++...|..+..
T Consensus 25 ~~~~r~~~ppgp~-~~P~~G~~~~~--~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~ 101 (463)
T PLN02774 25 VRYSKKGLPPGTM-GWPLFGETTEF--LKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYP 101 (463)
T ss_pred hccCCCCCCCCCC-CCCchhhHHHH--HHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCC
Confidence 4445667889999 99999999877 34556789999999999999999999999999999999999877766643332
Q ss_pred hhhhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhh-hhhhhhh
Q 043622 98 ILLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQT-LSCYIRK 146 (148)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~-~~~~~~~ 146 (148)
......++ +.+++.++ |+.|+++|+++++ +|+++.+++ +.+ .++
T Consensus 102 ~~~~~~lg--~~~~~~~~-g~~w~~~R~~l~~-~~~~~~~~~~~~~-~~~ 146 (463)
T PLN02774 102 QSMLDILG--TCNIAAVH-GSTHRYMRGSLLS-LISPTMIRDHLLP-KID 146 (463)
T ss_pred HHHHHHhC--ccchhhcC-CHHHHHHHHHHHH-hcCHHHHHHHHHH-HHH
Confidence 22222332 24677666 9999999999999 899999986 566 654
No 14
>PLN02655 ent-kaurene oxidase
Probab=99.84 E-value=1.4e-20 Score=137.83 Aligned_cols=118 Identities=21% Similarity=0.336 Sum_probs=95.5
Q ss_pred CCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchhhhhhhc
Q 043622 26 PPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRILLGEHLG 105 (148)
Q Consensus 26 ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~ 105 (148)
||||+ ++|++||++++. ..+.+..+.+|+++||+++++++++.++++++||+++++|+.++...|.+++.......+.
T Consensus 1 ppgp~-~lP~iG~l~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~ 78 (466)
T PLN02655 1 VPAVP-GLPVIGNLLQLK-EKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLT 78 (466)
T ss_pred CcCCC-CCCccccHHHcC-CCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHh
Confidence 68999 999999998885 4568899999999999999999999999999999999999998888888776543333333
Q ss_pred cCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhh
Q 043622 106 YNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRK 146 (148)
Q Consensus 106 ~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~ 146 (148)
..+.+++++++|+.|+++|+.+.+.+|+...++.+.+ +++
T Consensus 79 ~~~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~-~~~ 118 (466)
T PLN02655 79 RDKSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRD-TRD 118 (466)
T ss_pred cCCCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHH-HHH
Confidence 3223466666689999999877765788878887777 654
No 15
>PLN02500 cytochrome P450 90B1
Probab=99.83 E-value=1.6e-20 Score=138.35 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=91.9
Q ss_pred CCCCCCCCCCCCCceeeecchhc---ccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCc
Q 043622 21 KIKNLPPNPFPALPIVGHLYLIF---KNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPR 97 (148)
Q Consensus 21 ~~~~~ppgp~~~~p~~G~~~~~~---~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~ 97 (148)
+..+.||||+ ++|++||+..+. .....+..+.+++++||++++++++++++|+++||+++++++.+++..|.++..
T Consensus 35 ~~~~~PPgp~-~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~ 113 (490)
T PLN02500 35 KRFNLPPGNM-GWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP 113 (490)
T ss_pred CCCCCCCCCc-CCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc
Confidence 4457899999 999999986543 123567789999999999999999999999999999999999987776754432
Q ss_pred hhhhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhh-hh
Q 043622 98 ILLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTL-SC 142 (148)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~-~~ 142 (148)
......++ +.++++++ |+.|+++|+++++ .|++.+++.+ .+
T Consensus 114 ~~~~~~~g--~~~~~~~~-g~~wr~~Rk~~~~-~f~~~~l~~~~~~ 155 (490)
T PLN02500 114 RSIGGILG--KWSMLVLV-GDMHRDMRSISLN-FLSHARLRTHLLK 155 (490)
T ss_pred hHHHHHhC--cccccccC-CHHHHHHHHHHHH-hcChHHHHHHHHH
Confidence 22222232 24677776 9999999999999 8999999873 44
No 16
>PLN02290 cytokinin trans-hydroxylase
Probab=99.83 E-value=2.9e-20 Score=137.72 Aligned_cols=120 Identities=15% Similarity=0.208 Sum_probs=91.4
Q ss_pred CCCCCCCCCCCCceeeecchhccc------------------CchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHH
Q 043622 22 IKNLPPNPFPALPIVGHLYLIFKN------------------KPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEE 83 (148)
Q Consensus 22 ~~~~ppgp~~~~p~~G~~~~~~~~------------------~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~ 83 (148)
.+.-||||+ ++|++||++.+. . ......+.+|+++||+++.+++|+.++|+++||+++++
T Consensus 40 ~~~~~PGP~-~~P~iGnl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~ 117 (516)
T PLN02290 40 ERQGVRGPK-PRPLTGNILDVS-ALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKE 117 (516)
T ss_pred HHcCCCCCC-CCcCCCCHHHHH-HHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHH
Confidence 344578999 999999998763 1 12233578899999999999999999999999999999
Q ss_pred HHhhCCCCCCCCCchhhhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 84 CFTKSDVVFANRPRILLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
++.++. .+..++...........+.|+++++ |+.|+++||++++ .|+.++++.+.+ .+++
T Consensus 118 il~~~~-~~~~r~~~~~~~~~~~~g~~l~~~~-g~~Wk~~Rk~~~~-~f~~~~l~~~~~-~i~~ 177 (516)
T PLN02290 118 LLTKYN-TVTGKSWLQQQGTKHFIGRGLLMAN-GADWYHQRHIAAP-AFMGDRLKGYAG-HMVE 177 (516)
T ss_pred HHhcCC-CCCCCcchhhhHHHHHhcCCccccC-chHHHHHHhhccc-ccCHHHHHHHHH-HHHH
Confidence 998764 3444443211111111136788877 9999999999999 899999999998 7754
No 17
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=2.1e-19 Score=130.59 Aligned_cols=129 Identities=22% Similarity=0.331 Sum_probs=98.0
Q ss_pred HHHHHHh--hcCCCCCCCCCCCCCceeeecchhc-ccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhC
Q 043622 12 CIVATHL--NNKIKNLPPNPFPALPIVGHLYLIF-KNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKS 88 (148)
Q Consensus 12 ~~~~~~~--~~~~~~~ppgp~~~~p~~G~~~~~~-~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~ 88 (148)
++++.+. ++..+++| +|+ +.|++||+..+. ...........|.++ |+++.++.+.+|.++++||+++++|+.+.
T Consensus 18 y~~~~~~~~yw~rrGi~-~~~-p~p~~Gn~~~~~~~~~~~~~~~~~~~~~-~~~~G~y~~~~p~l~v~D~elik~I~ik~ 94 (499)
T KOG0158|consen 18 YLWLRWTYSYWRRRGIP-GPK-PLPFLGNLPGMLKRERPGDLLLDIYTKY-RPVVGIYEGRQPALLVSDPELIKEILIKD 94 (499)
T ss_pred HHHHHhhhhhhccCCCC-CCC-CCCcEecHHHHHhccCcHHHHHHHHhcC-CCEEEEEecCCcceEecCHHHHHHHHHHh
Confidence 3334444 55666665 888 889999998876 122344455555555 99999999999999999999999999999
Q ss_pred CCCCCCCC--chhhhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 89 DVVFANRP--RILLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 89 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
.++|.++. ....... .....++++++ |++||+.|..++| .|++.+++.+.+ .+++
T Consensus 95 F~~F~~r~~~~~~d~~~-~l~~~~Lf~~~-g~~WK~lR~~lsP-~Fts~kmk~m~~-t~~~ 151 (499)
T KOG0158|consen 95 FDNFYNRKRPIYGDPED-PLSALNLFFLR-GERWKRLRTKLSP-TFTSGKLKKMFP-TMEE 151 (499)
T ss_pred CccCcCCCCCCcCCCCC-cccccCchhcc-CchHHHHHHhhcc-ccchhhHHHHHH-HHHH
Confidence 99998844 3221111 12225778888 9999999999999 899999999999 7764
No 18
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.79 E-value=6.2e-19 Score=129.34 Aligned_cols=115 Identities=15% Similarity=0.264 Sum_probs=90.2
Q ss_pred CCCCCCCCCCCCceeeecchhcc---cCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCch
Q 043622 22 IKNLPPNPFPALPIVGHLYLIFK---NKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRI 98 (148)
Q Consensus 22 ~~~~ppgp~~~~p~~G~~~~~~~---~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~ 98 (148)
..+.||||. ++|++|+++++.. ..++...+.++.++||++++++++++++++++||+++++++.++...|.++...
T Consensus 28 ~~~lppgp~-~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~ 106 (472)
T PLN02987 28 RMRLPPGSL-GLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPG 106 (472)
T ss_pred CCCCcCCCc-CCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcH
Confidence 345789999 9999999987630 245778899999999999999999999999999999999999888777655433
Q ss_pred hhhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhh
Q 043622 99 LLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLS 141 (148)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~ 141 (148)
.....++ ++|+++++ |+.|+++|+++.+ +++.+.++.+.
T Consensus 107 ~~~~~lg--~~~l~~~~-g~~wr~~R~~~~~-f~~~~~~~~~~ 145 (472)
T PLN02987 107 SISNLLG--KHSLLLMK-GNLHKKMHSLTMS-FANSSIIKDHL 145 (472)
T ss_pred HHHHHhC--cccccccC-cHHHHHHHHHHHH-hcChHHHHHHH
Confidence 2333332 36788887 9999999999876 56655665543
No 19
>PLN03018 homomethionine N-hydroxylase
Probab=99.79 E-value=2.8e-18 Score=127.51 Aligned_cols=117 Identities=26% Similarity=0.457 Sum_probs=86.9
Q ss_pred CCCCCCCCCCceeeecchhcccCch-HHHHHHHHhhc-CCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchhhh
Q 043622 24 NLPPNPFPALPIVGHLYLIFKNKPL-HRTLSQLSSKH-GPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRILLG 101 (148)
Q Consensus 24 ~~ppgp~~~~p~~G~~~~~~~~~~~-~~~~~~~~~~y-g~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~ 101 (148)
+.||||+ ++|++||++++. .... ...+.+..++| |+++++++|+.++|+++||+++++++.+++..|.+++.....
T Consensus 40 ~~PPgp~-~~P~iGnl~~l~-~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~ 117 (534)
T PLN03018 40 QLPPGPP-GWPILGNLPELI-MTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM 117 (534)
T ss_pred CCCcCCC-CCCeeccHHHhc-cCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh
Confidence 4789999 999999998874 2222 23455666665 799999999999999999999999999888888888765444
Q ss_pred hhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhh
Q 043622 102 EHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSC 142 (148)
Q Consensus 102 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~ 142 (148)
..++.+..+++++++|+.|+++|+++++.+++....+.+.+
T Consensus 118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~ 158 (534)
T PLN03018 118 ETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEA 158 (534)
T ss_pred hhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 43433334677776699999999999994344444444444
No 20
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.78 E-value=3.9e-18 Score=125.62 Aligned_cols=120 Identities=19% Similarity=0.278 Sum_probs=92.1
Q ss_pred CCCCCCCCCCCCCceeeecchhc---ccCchHHHHHHHHhhcCC--eeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCC
Q 043622 21 KIKNLPPNPFPALPIVGHLYLIF---KNKPLHRTLSQLSSKHGP--ILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANR 95 (148)
Q Consensus 21 ~~~~~ppgp~~~~p~~G~~~~~~---~~~~~~~~~~~~~~~yg~--v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~ 95 (148)
...+.||||. ++|++|+++.+. ...+.+..+.+++++||+ ++++++++.++++++||+++++|+.++ ..|.++
T Consensus 39 ~~~~lpPgp~-~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~ 116 (490)
T PLN02302 39 GQPPLPPGDL-GWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPG 116 (490)
T ss_pred CCCCCcCCCC-CCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccC
Confidence 3457899999 999999998764 134678889999999997 789999999999999999999999865 455544
Q ss_pred CchhhhhhhccCCCceEeCCCCchHHHHHhhhhhhcC-ChhhHhhhhhhhhhc
Q 043622 96 PRILLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDIL-SNTSLQTLSCYIRKD 147 (148)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f-~~~~l~~~~~~~~~~ 147 (148)
........+ +..+++..+ |+.|+++|+.+++ .| +.+.++.+.+ .+++
T Consensus 117 ~~~~~~~~~--g~~~~~~~~-g~~w~~~R~~~~~-~f~~~~~l~~~~~-~i~~ 164 (490)
T PLN02302 117 WPESTVELI--GRKSFVGIT-GEEHKRLRRLTAA-PVNGPEALSTYIP-YIEE 164 (490)
T ss_pred CchhHHHHh--ccccccccC-cHHHHHHHHHHHh-ccCCHHHHHHHHH-HHHH
Confidence 322222222 223445556 9999999999999 78 4778999988 7654
No 21
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.77 E-value=1.6e-18 Score=126.62 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=92.8
Q ss_pred cCCCCCCCCCCCCCceeeecchhcc---cCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCC
Q 043622 20 NKIKNLPPNPFPALPIVGHLYLIFK---NKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRP 96 (148)
Q Consensus 20 ~~~~~~ppgp~~~~p~~G~~~~~~~---~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~ 96 (148)
+++.+.||||. ++|++|+++.+.. ..+.+.++.++.++||+++++++++.++|+++||+++++++.+++..|..+.
T Consensus 3 ~~~~~~Ppg~~-~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~ 81 (452)
T PLN03141 3 KKKSRLPKGSL-GWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAY 81 (452)
T ss_pred CCCCCCCCCCC-CCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccC
Confidence 35667899999 9999999988740 2357789999999999999999999999999999999999998877776543
Q ss_pred chhhhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhh
Q 043622 97 RILLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTL 140 (148)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~ 140 (148)
........+ ..++++.+ |+.|+++|+++++ .|+...++.+
T Consensus 82 ~~~~~~l~g--~~~~~~~~-g~~wr~~r~~~~~-~~~~~~l~~~ 121 (452)
T PLN03141 82 PKSLTELMG--KSSILLIN-GSLQRRVHGLIGA-FLKSPHLKAQ 121 (452)
T ss_pred chhHHHHhC--cccccccC-cHHHHHHHHHHHH-hcCcHHHHHH
Confidence 222222332 24677777 9999999999999 7988777664
No 22
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.76 E-value=6e-18 Score=125.46 Aligned_cols=111 Identities=15% Similarity=0.224 Sum_probs=85.9
Q ss_pred CCCCCCCCceeeecchhcccCchHHHHHHHHhhc---CCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchh-hh
Q 043622 26 PPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKH---GPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRIL-LG 101 (148)
Q Consensus 26 ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~y---g~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~-~~ 101 (148)
+|||+ ++|++|++..+. .. +..+.+|.++| |+++.+++++.+.++++||+++++|+.++...|.++.... ..
T Consensus 32 ~pgp~-~~p~~G~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 107 (516)
T PLN03195 32 RKGPK-SWPIIGAALEQL-KN--YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYM 107 (516)
T ss_pred cCCCC-CCCeecchHHHH-hc--cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHH
Confidence 57999 999999987653 22 33456777777 7999999999999999999999999987655666554321 11
Q ss_pred hhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhh
Q 043622 102 EHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIR 145 (148)
Q Consensus 102 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~ 145 (148)
... .++++++.+ |+.|+++||++++ .|+.++++.+.+ .+
T Consensus 108 ~~~--~g~~l~~~~-g~~w~~~Rr~l~~-~fs~~~l~~~~~-~~ 146 (516)
T PLN03195 108 EVL--LGDGIFNVD-GELWRKQRKTASF-EFASKNLRDFST-VV 146 (516)
T ss_pred HHH--hcCeeeccC-cHHHHHHHHhcch-hhhHHHHHHHHH-HH
Confidence 111 136777776 9999999999999 899999999888 64
No 23
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.76 E-value=3.8e-18 Score=125.84 Aligned_cols=117 Identities=26% Similarity=0.459 Sum_probs=98.6
Q ss_pred CCCCCCCCCCCCceeeecchhccc--CchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchh
Q 043622 22 IKNLPPNPFPALPIVGHLYLIFKN--KPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRIL 99 (148)
Q Consensus 22 ~~~~ppgp~~~~p~~G~~~~~~~~--~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~ 99 (148)
....||||+ ++|++|++.++. . .....+..++..+||++++.++++.+.++++||+.+++|+.++...+.+.+.++
T Consensus 33 ~~~~~~gp~-~~P~iG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~ 110 (497)
T KOG0157|consen 33 KKKLPPGPP-GWPLIGNLLEFL-KPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYP 110 (497)
T ss_pred HhccCCCCC-CCCcccchHHhh-cchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHH
Confidence 566788999 999999999986 3 356778999999999999999999999999999999999976666666665554
Q ss_pred -hh-hhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhh
Q 043622 100 -LG-EHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRK 146 (148)
Q Consensus 100 -~~-~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~ 146 (148)
.. ..+ |+|+++++ |+.|+++||++++ +|+.+.++++.. ...
T Consensus 111 ~~~~~~l---G~gll~~~-g~~W~~~Rk~~~~-~f~~~~L~~~~~-~~~ 153 (497)
T KOG0157|consen 111 ESLKPWL---GDGLLFSD-GEKWHKHRKLLTP-AFHFEILKSFVP-VFI 153 (497)
T ss_pred HHHHHHh---cCccccCC-chHHHHHHhhccH-hhhHHHHHHHHH-HHH
Confidence 33 333 36999999 9999999999999 899999999987 643
No 24
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.72 E-value=2.2e-18 Score=124.88 Aligned_cols=116 Identities=29% Similarity=0.499 Sum_probs=93.5
Q ss_pred CCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchhhhhh--
Q 043622 26 PPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRILLGEH-- 103 (148)
Q Consensus 26 ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~-- 103 (148)
||||. ++|++|++..+...++.+..+.+++++||+++++++++.++++++||+++++|+.++...+..++.......
T Consensus 1 Ppgp~-~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~ 79 (463)
T PF00067_consen 1 PPGPP-PLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFR 79 (463)
T ss_dssp SSCSS-SBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHH
T ss_pred CcCCC-CcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhcccccccccccccccccccccccc
Confidence 78999 999999999985126678899999999999999999999999999999999999988766765543322221
Q ss_pred hccCCCceEeCCCCchHHHHHhhhhhhcCChh-hHhhhhhhhhh
Q 043622 104 LGYNSTSLVWSPYGSHWRNLRKLLSHDILSNT-SLQTLSCYIRK 146 (148)
Q Consensus 104 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~-~l~~~~~~~~~ 146 (148)
....+.++++.+ |+.|+++|+++.+ .|+.. .+ ++.+ .++
T Consensus 80 ~~~~~~~l~~~~-~~~~~~~R~~~~~-~~~~~~~~-~~~~-~i~ 119 (463)
T PF00067_consen 80 GPFGGKGLFFSD-GERWRRQRRLLAP-AFSSKKIL-KLEP-LID 119 (463)
T ss_dssp HHHTTTSSTTSS-HHHHHHHHHHHHH-HHSHHHHH-HHHH-HHH
T ss_pred cccccccccccc-ccccccccccccc-cccccccc-cccc-ccc
Confidence 123347888888 8999999999999 78888 55 7766 554
No 25
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.69 E-value=3.7e-16 Score=115.57 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=85.8
Q ss_pred hcCCCCCCCCCCCCCceeeecchhc-ccCchHHHHHHHHhhcCCeeE---EEcCCccEEEecCHHHHHHHHhhCCCCCCC
Q 043622 19 NNKIKNLPPNPFPALPIVGHLYLIF-KNKPLHRTLSQLSSKHGPILL---LNLGTRRVLLLSSPSAVEECFTKSDVVFAN 94 (148)
Q Consensus 19 ~~~~~~~ppgp~~~~p~~G~~~~~~-~~~~~~~~~~~~~~~yg~v~~---~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~ 94 (148)
+++++++| ||+ ++|++||+..+. +.....+++.+...+||..++ .++++.++++++||+++++|+.++...|.+
T Consensus 27 ~~~~~~~p-~p~-~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k 104 (500)
T PLN02169 27 HKKPHGQP-ILK-NWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPK 104 (500)
T ss_pred HhccCCCC-CCC-CCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCC
Confidence 34455554 899 999999997764 223344556666666886555 577899999999999999999987777877
Q ss_pred CCchhhhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhh
Q 043622 95 RPRILLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQT 139 (148)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~ 139 (148)
++....... ..++|+++++ |+.|+++||+++| +|+.+.++.
T Consensus 105 ~~~~~~~~~--~~g~gl~~~~-g~~Wr~~Rk~l~p-~F~~~~~~~ 145 (500)
T PLN02169 105 GPEFKKIFD--VLGEGILTVD-FELWEDLRKSNHA-LFHNQDFIE 145 (500)
T ss_pred cHHHHHHHH--hhcCcccccC-cHHHHHHHHHHHH-HhhhHHHHH
Confidence 654322111 2247999988 9999999999999 899987753
No 26
>PLN02738 carotene beta-ring hydroxylase
Probab=99.64 E-value=1.2e-15 Score=115.30 Aligned_cols=105 Identities=17% Similarity=0.284 Sum_probs=84.2
Q ss_pred eecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchhhhhhhccCCCceEeCCC
Q 043622 37 GHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRILLGEHLGYNSTSLVWSPY 116 (148)
Q Consensus 37 G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (148)
|++..+. .+..+..+.+++++||+++++++|+.++++++||+.+++|+.++...|.+++........ .+.++++++
T Consensus 143 G~l~~i~-~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~--~g~~l~~~d- 218 (633)
T PLN02738 143 GSISAVR-GEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFV--MGKGLIPAD- 218 (633)
T ss_pred CcHHHhc-CchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhc--cCCceecCC-
Confidence 4444443 566788999999999999999999999999999999999999777677765433222222 236777777
Q ss_pred CchHHHHHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 117 GSHWRNLRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 117 g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
|+.|+++|+.+++ +|+.+.++.+.+ ++++
T Consensus 219 ge~wr~rRr~l~p-~Fs~~~v~~l~~-~i~~ 247 (633)
T PLN02738 219 GEIWRVRRRAIVP-ALHQKYVAAMIS-LFGQ 247 (633)
T ss_pred cHHHHHHHHhccH-hhhHHHHHHHHH-HHHH
Confidence 9999999999999 899999999988 7754
No 27
>PLN02936 epsilon-ring hydroxylase
Probab=99.63 E-value=1.2e-15 Score=112.64 Aligned_cols=110 Identities=16% Similarity=0.283 Sum_probs=89.6
Q ss_pred CCCCCCCceeeecchhc---ccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchhhhhh
Q 043622 27 PNPFPALPIVGHLYLIF---KNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRILLGEH 103 (148)
Q Consensus 27 pgp~~~~p~~G~~~~~~---~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~~~ 103 (148)
.|-. ++|++|...+.. ..+..+..+.+|+++||+++++++++.++++++||+++++|+.+.+..|.++........
T Consensus 15 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~~ 93 (489)
T PLN02936 15 GDDS-GIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSEF 93 (489)
T ss_pred CCCC-CCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhHH
Confidence 4566 899999987765 356688899999999999999999999999999999999999877677877654332222
Q ss_pred hccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhh
Q 043622 104 LGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLS 141 (148)
Q Consensus 104 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~ 141 (148)
. . +.++++++ |+.|+++||++++ .|+.+.++.+.
T Consensus 94 ~-~-~~~i~~~~-g~~wk~~Rk~l~~-~f~~~~l~~~~ 127 (489)
T PLN02936 94 L-F-GSGFAIAE-GELWTARRRAVVP-SLHRRYLSVMV 127 (489)
T ss_pred H-h-cCccccCC-chHHHHHHHhhcC-ccCHHHHHHHH
Confidence 2 2 36777777 9999999999999 89988888764
No 28
>PLN02648 allene oxide synthase
Probab=99.60 E-value=5.8e-16 Score=113.74 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=88.7
Q ss_pred CCCCCCCCCCCceeeecchhc---ccCchHHHHHHHHhhcCC-eeEEEcCCccE-------EEecCHHHHHHHHhh----
Q 043622 23 KNLPPNPFPALPIVGHLYLIF---KNKPLHRTLSQLSSKHGP-ILLLNLGTRRV-------LLLSSPSAVEECFTK---- 87 (148)
Q Consensus 23 ~~~ppgp~~~~p~~G~~~~~~---~~~~~~~~~~~~~~~yg~-v~~~~~~~~~~-------v~i~~p~~~~~i~~~---- 87 (148)
.+.|||+. ++|++|++.++. ...++..++.+..+|||+ ||+++++|.|+ |+++||+.++.++.+
T Consensus 16 ~~~PPg~~-g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~ 94 (480)
T PLN02648 16 LREIPGSY-GLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVD 94 (480)
T ss_pred CCCCCCCC-CCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcc
Confidence 45689999 999999997653 134557899999999998 99999998666 999999999999975
Q ss_pred CCCCCCCCCchhhhhhhccCCC---ceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 88 SDVVFANRPRILLGEHLGYNST---SLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
+...+....... ...++ ++ +++..+ |+.|+++|+++.+ +|+ ..++.|.+ .+++
T Consensus 95 ~~~~~~~~~~~~-~~l~G--~~~~~s~~~~~-g~~H~r~Rrll~~-~f~-~~~~~~~~-~m~~ 150 (480)
T PLN02648 95 KRDVFTGTYMPS-TAFTG--GYRVLSYLDPS-EPKHAKLKSFLFE-LLK-SRHRRFIP-EFRA 150 (480)
T ss_pred ccccceeeeccC-ccccC--CceeeeecCCC-CchHHHHHHHHHH-HHH-Hhhhhhhh-HHHH
Confidence 443344332222 22332 24 555555 9999999999999 899 57788988 7754
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.52 E-value=5.2e-14 Score=101.77 Aligned_cols=117 Identities=26% Similarity=0.404 Sum_probs=94.5
Q ss_pred CCCCCCCCceeeecchhc--ccCchHHHHHHHHhhcCCeeEEE-cCCccEEEecCHHHHHHHHhhCCCCCCCCC-chh--
Q 043622 26 PPNPFPALPIVGHLYLIF--KNKPLHRTLSQLSSKHGPILLLN-LGTRRVLLLSSPSAVEECFTKSDVVFANRP-RIL-- 99 (148)
Q Consensus 26 ppgp~~~~p~~G~~~~~~--~~~~~~~~~~~~~~~yg~v~~~~-~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~-~~~-- 99 (148)
.|||. .+|++|.+..+. ...+.|+.....+++||+|++.. +|+...|.+.||++++.++.+++. ++-|+ ...
T Consensus 52 IP~p~-~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~-~P~Rp~~~~~w 129 (519)
T KOG0159|consen 52 IPGPK-GLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGK-YPFRPLLIEPW 129 (519)
T ss_pred cCCCC-CccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCC-CCCcccccchh
Confidence 47999 999999988533 25678899999999999999999 788899999999999999987663 45563 221
Q ss_pred -hhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhh
Q 043622 100 -LGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRK 146 (148)
Q Consensus 100 -~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~ 146 (148)
..+....+..|+++.+ |+.|.+.|..+++..++++.++.|.+ ..+
T Consensus 130 ~~~rd~~~~~~Gl~~~~-G~~W~~~Rs~ln~~ll~P~~v~~yl~-~l~ 175 (519)
T KOG0159|consen 130 VAYRDFRGGVCGLFLLE-GPEWQRLRSALNPLLLQPQAVRRYLP-QLN 175 (519)
T ss_pred hhhHHhhccCCCcccCC-CHHHHHHHHHhchhhcCHHHHHHHhh-HHH
Confidence 1222333447889888 99999999999999999999999998 654
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=5.9e-13 Score=94.80 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=98.7
Q ss_pred HHhhcCCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCC
Q 043622 16 THLNNKIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANR 95 (148)
Q Consensus 16 ~~~~~~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~ 95 (148)
..+.+..+..||--..++|++|....+ ++++.+++++.++|||+||.+.++|+.+.++.+|+....++.+..+..+-+
T Consensus 23 ~~~~r~~~~~PPli~gwiP~lG~a~~f--gk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~ 100 (486)
T KOG0684|consen 23 LLQRRTSRKEPPLIKGWIPWLGSALAF--GKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFE 100 (486)
T ss_pred HHhcccCCCCCcccccCcchhhHHHHh--ccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHH
Confidence 344444445776666468999999999 899999999999999999999999999999999999999998765555433
Q ss_pred CchhhhhhhccCCCceEeCCCCchHHHHHhhhhhhcCChhhHhhhhhhhhhcC
Q 043622 96 PRILLGEHLGYNSTSLVWSPYGSHWRNLRKLLSHDILSNTSLQTLSCYIRKDE 148 (148)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~~~~~~ 148 (148)
........-.++ .|+.....+....++-+++.. ++...++++|.+ +|.+|
T Consensus 101 ~~~~~l~~~vFg-~~v~~d~~~~~~~e~~~~~k~-~L~~~~lk~~~e-~m~~e 150 (486)
T KOG0684|consen 101 EAYSKLTTPVFG-KGVVYDVPNHVMMEQKKFFKS-ALGGVALKSLVE-LMLEE 150 (486)
T ss_pred HHHHHhhhhhcC-CCccccCCCchHHHHHHHHHH-HhchhhHHHHHH-HHHHH
Confidence 333111111222 567666657888899999999 899999999999 87653
No 31
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.35 E-value=2.1e-11 Score=90.54 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=75.3
Q ss_pred CceeeecchhcccCchHHHHHHHHhhcC-CeeEEEcCCccEEEecCHHHHHHHHhhCCCCCCCCCchh-hhhhhccCCCc
Q 043622 33 LPIVGHLYLIFKNKPLHRTLSQLSSKHG-PILLLNLGTRRVLLLSSPSAVEECFTKSDVVFANRPRIL-LGEHLGYNSTS 110 (148)
Q Consensus 33 ~p~~G~~~~~~~~~~~~~~~~~~~~~yg-~v~~~~~~~~~~v~i~~p~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~ 110 (148)
.++.|+.... ..+..+++..+.++++ ..++++.++. ++++||+.+++|+.++...|.+..... ....+ . ++|
T Consensus 49 ~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~-~-g~g 122 (502)
T PLN02426 49 AYLTASWAKD--FDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDL-L-GRG 122 (502)
T ss_pred CCccHHHHHh--cccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHh-c-CCc
Confidence 4466776654 3446777777888887 5777776554 889999999999988777787654332 22222 2 378
Q ss_pred eEeCCCCchHHHHHhhhhhhcCChhhHhhhh
Q 043622 111 LVWSPYGSHWRNLRKLLSHDILSNTSLQTLS 141 (148)
Q Consensus 111 ~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~ 141 (148)
+++++ |+.|+++||++++ .|+.+.++.+.
T Consensus 123 i~~~~-g~~wk~~Rk~l~~-~fs~~~l~~~~ 151 (502)
T PLN02426 123 IFNVD-GDSWRFQRKMASL-ELGSVSIRSYA 151 (502)
T ss_pred eeecC-cHHHHHHHHHhHh-hhhhHHHHHHH
Confidence 88888 9999999999999 89999998874
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.53 E-value=3.4e-07 Score=66.73 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=67.3
Q ss_pred hHHHHHHHHhhcCCeeEEEcCCcc--EEEecCHHHHHHHHhhCCCCCCCCCchhhh---hhhccCCCceEeCCCCchHHH
Q 043622 48 LHRTLSQLSSKHGPILLLNLGTRR--VLLLSSPSAVEECFTKSDVVFANRPRILLG---EHLGYNSTSLVWSPYGSHWRN 122 (148)
Q Consensus 48 ~~~~~~~~~~~yg~v~~~~~~~~~--~v~i~~p~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~w~~ 122 (148)
.........+.||.+...+..++. .+++++++.+++++.++. .+++....... .....+..++++.+ |+.|++
T Consensus 24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~d-g~~H~r 101 (411)
T COG2124 24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLD-GPEHTR 101 (411)
T ss_pred hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecC-CHHHHH
Confidence 345566677888888877766654 789999999999998764 22222211111 11112212367777 999999
Q ss_pred HHhhhhhhcCChhhHhhhhhhhhhc
Q 043622 123 LRKLLSHDILSNTSLQTLSCYIRKD 147 (148)
Q Consensus 123 ~R~~~~~~~f~~~~l~~~~~~~~~~ 147 (148)
+||++++ .|+++.+++|.+ .+++
T Consensus 102 ~Rkl~~~-~F~~~~~~~~~~-~i~~ 124 (411)
T COG2124 102 LRKLLAP-AFTPRALRGYRP-LIRE 124 (411)
T ss_pred HHHHhcc-ccCHHHHHHHHH-HHHH
Confidence 9999999 899999999999 7654
No 33
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=74.50 E-value=9.8 Score=23.19 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhhC
Q 043622 48 LHRTLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTKS 88 (148)
Q Consensus 48 ~~~~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~~ 88 (148)
....+++|.++||.+-... +...+...|++.++++..+.
T Consensus 76 v~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~~~ 114 (129)
T PF13625_consen 76 VEQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLADP 114 (129)
T ss_pred HHHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHhCh
Confidence 4568999999999865531 45677788999999998653
No 34
>PF15240 Pro-rich: Proline-rich
Probab=58.47 E-value=8.5 Score=25.08 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHHH
Q 043622 1 MLLYLILLIALCIV 14 (148)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (148)
||+||+.+++|++-
T Consensus 1 MLlVLLSvALLALS 14 (179)
T PF15240_consen 1 MLLVLLSVALLALS 14 (179)
T ss_pred ChhHHHHHHHHHhh
Confidence 66666665555544
No 35
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=58.24 E-value=24 Score=20.13 Aligned_cols=6 Identities=33% Similarity=0.888 Sum_probs=3.8
Q ss_pred CCceee
Q 043622 32 ALPIVG 37 (148)
Q Consensus 32 ~~p~~G 37 (148)
.-|++|
T Consensus 66 YrPvI~ 71 (94)
T PF05393_consen 66 YRPVIG 71 (94)
T ss_pred cccccc
Confidence 456676
No 36
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.05 E-value=40 Score=19.26 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhh
Q 043622 51 TLSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTK 87 (148)
Q Consensus 51 ~~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~ 87 (148)
-.++-.++||++....--.+-.+.-++-+.+.+++..
T Consensus 17 K~aRqLrkfG~v~Y~Skk~kY~vlYvn~~~ve~~~~k 53 (90)
T COG4471 17 KDARQLRKFGDVHYVSKKSKYVVLYVNEQDVEQIVEK 53 (90)
T ss_pred hhhHHHHhcCCEEEEecceeEEEEEECHHHHHHHHHH
Confidence 3456678999998886666677888899999998864
No 37
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=51.25 E-value=31 Score=17.13 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=22.9
Q ss_pred HHHHhhcCCeeEEEcCCc----cEEEecCHHHHHHHHh
Q 043622 53 SQLSSKHGPILLLNLGTR----RVLLLSSPSAVEECFT 86 (148)
Q Consensus 53 ~~~~~~yg~v~~~~~~~~----~~v~i~~p~~~~~i~~ 86 (148)
.+..++||+|..+.+... -.|-..+++.++.+..
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~ 39 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIE 39 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHH
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 567899999888775442 3455668888777765
No 38
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=42.75 E-value=58 Score=17.80 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=25.2
Q ss_pred HHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhh
Q 043622 54 QLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTK 87 (148)
Q Consensus 54 ~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~ 87 (148)
+--++||++..+.--..-.++-.|.+.+.++...
T Consensus 15 r~L~kfG~i~Y~Skk~kYvvlYvn~~~~e~~~~k 48 (71)
T PF09902_consen 15 RQLRKFGDIHYVSKKMKYVVLYVNEEDVEEIIEK 48 (71)
T ss_pred HhHhhcccEEEEECCccEEEEEECHHHHHHHHHH
Confidence 4557899998886555567777788888887753
No 39
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=42.60 E-value=33 Score=17.49 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.2
Q ss_pred cCCeeEEEcCCccEEEec
Q 043622 59 HGPILLLNLGTRRVLLLS 76 (148)
Q Consensus 59 yg~v~~~~~~~~~~v~i~ 76 (148)
-|+++++.-||+.|.|..
T Consensus 3 ~GDvV~LKSGGp~MTV~~ 20 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVTE 20 (53)
T ss_pred CCCEEEEccCCCCeEEEE
Confidence 389999999999988863
No 40
>PRK02302 hypothetical protein; Provisional
Probab=41.43 E-value=70 Score=18.38 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=26.8
Q ss_pred HHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhh
Q 043622 52 LSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTK 87 (148)
Q Consensus 52 ~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~ 87 (148)
..+--++||++..+.--.+-.+.-+|.+.++++...
T Consensus 19 ~~r~LrkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~k 54 (89)
T PRK02302 19 DARKLSKYGDIVYHSKRSRYLVLYVNKEDVEQKLEE 54 (89)
T ss_pred hHHHHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 344568899999887666667777888888887753
No 41
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=39.22 E-value=76 Score=18.87 Aligned_cols=11 Identities=36% Similarity=0.374 Sum_probs=7.9
Q ss_pred CCceeeecchh
Q 043622 32 ALPIVGHLYLI 42 (148)
Q Consensus 32 ~~p~~G~~~~~ 42 (148)
..|+.||+...
T Consensus 45 ~~p~YgNL~~~ 55 (107)
T PF15330_consen 45 DDPCYGNLELQ 55 (107)
T ss_pred CCccccccccc
Confidence 56888987654
No 42
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=36.61 E-value=85 Score=17.99 Aligned_cols=56 Identities=16% Similarity=0.420 Sum_probs=31.8
Q ss_pred cCHHHHHHHHhhCCCCCCCCCchhhhhhhccCCCceEeCCCC-chHHHHHhhhhhhcCChhhHhhh
Q 043622 76 SSPSAVEECFTKSDVVFANRPRILLGEHLGYNSTSLVWSPYG-SHWRNLRKLLSHDILSNTSLQTL 140 (148)
Q Consensus 76 ~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~w~~~R~~~~~~~f~~~~l~~~ 140 (148)
+|-+++++.+.-+... . ...+.+....+++.++| +.|++.--.++. +-|..++++-
T Consensus 8 t~~~al~~~lryk~~v--a------~hgflfddg~~vw~e~~d~~w~rl~~vv~a-l~ss~rm~~~ 64 (111)
T PF02484_consen 8 TNMEALRDALRYKNEV--A------RHGFLFDDGDIVWSEDDDETWNRLCDVVNA-LISSNRMQQV 64 (111)
T ss_pred ccHHHHHHHHHHHhhc--c------ccceEecCCcEEEecCChHHHHHHHHHHHH-HHhhHHHHhh
Confidence 4667788887522210 1 11111221234555434 789999988888 7777776653
No 43
>PRK02886 hypothetical protein; Provisional
Probab=36.46 E-value=85 Score=17.94 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=26.7
Q ss_pred HHHHHhhcCCeeEEEcCCccEEEecCHHHHHHHHhh
Q 043622 52 LSQLSSKHGPILLLNLGTRRVLLLSSPSAVEECFTK 87 (148)
Q Consensus 52 ~~~~~~~yg~v~~~~~~~~~~v~i~~p~~~~~i~~~ 87 (148)
..+-.++||+|..+.--..-.++-+|.+.+.++...
T Consensus 17 ~~r~LrkyG~I~Y~Skr~kYvvlYvn~~~~e~~~~k 52 (87)
T PRK02886 17 QAKQLRKFGNVHYVSKRLKYAVLYCDMEQVEDIMNK 52 (87)
T ss_pred hHHHHhhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 344567899999886666667777888888887753
No 44
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=36.04 E-value=88 Score=20.42 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=29.4
Q ss_pred cCchHHHHHHHHhhcC-CeeEEEcCCc-c---EEEecCHHHH
Q 043622 45 NKPLHRTLSQLSSKHG-PILLLNLGTR-R---VLLLSSPSAV 81 (148)
Q Consensus 45 ~~~~~~~~~~~~~~yg-~v~~~~~~~~-~---~v~i~~p~~~ 81 (148)
.+...+...++.++.| +++.+.++|. | -++++||-..
T Consensus 153 GGkIteaVk~lr~~hgI~VISL~M~GSVpdVADlVvtDPvqA 194 (218)
T COG1707 153 GGKITEAVKELREEHGIPVISLNMFGSVPDVADLVVTDPVQA 194 (218)
T ss_pred cchHHHHHHHHHHhcCCeEEEeccCCCCcchhheeecCchHh
Confidence 5678889999999999 8999998774 2 4578888553
No 45
>PF15102 TMEM154: TMEM154 protein family
Probab=35.89 E-value=16 Score=23.06 Aligned_cols=9 Identities=11% Similarity=0.195 Sum_probs=4.0
Q ss_pred HHHHHHHhh
Q 043622 50 RTLSQLSSK 58 (148)
Q Consensus 50 ~~~~~~~~~ 58 (148)
+.+++|..+
T Consensus 128 eeldkwm~s 136 (146)
T PF15102_consen 128 EELDKWMNS 136 (146)
T ss_pred HHHHhHHHh
Confidence 344445443
No 46
>PHA01327 hypothetical protein
Probab=35.02 E-value=14 Score=17.68 Aligned_cols=20 Identities=10% Similarity=0.466 Sum_probs=14.6
Q ss_pred CceEeCCCCchHHHHHhhhhh
Q 043622 109 TSLVWSPYGSHWRNLRKLLSH 129 (148)
Q Consensus 109 ~~~~~~~~g~~w~~~R~~~~~ 129 (148)
++++... |++|.+.|.-+..
T Consensus 12 ~~vineh-ge~wqer~drmkk 31 (49)
T PHA01327 12 NNVINEH-GEEWQERKDRMKK 31 (49)
T ss_pred chHHHhh-HHHHHHHHHHHHH
Confidence 5566555 9999988876654
No 47
>COG5329 Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
Probab=30.81 E-value=70 Score=25.12 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=20.3
Q ss_pred chHHHHHHHHhhcCCeeEEEcCCccE
Q 043622 47 PLHRTLSQLSSKHGPILLLNLGTRRV 72 (148)
Q Consensus 47 ~~~~~~~~~~~~yg~v~~~~~~~~~~ 72 (148)
-....+.++.++||+++-+.+.+..-
T Consensus 294 af~kHF~~L~~~YG~v~vvNLl~tK~ 319 (570)
T COG5329 294 AFDKHFDKLREKYGDVYVVNLLKTKG 319 (570)
T ss_pred HHHHHHHHHHHHcCCEEEEEcccCCc
Confidence 34568999999999999988765443
No 48
>PF07659 DUF1599: Domain of Unknown Function (DUF1599); InterPro: IPR011630 This entry is represented by Clostridium phage phiCTP1, Gp74. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.30 E-value=19 Score=18.99 Aligned_cols=11 Identities=45% Similarity=1.114 Sum_probs=8.6
Q ss_pred CCCCchHHHHH
Q 043622 114 SPYGSHWRNLR 124 (148)
Q Consensus 114 ~~~g~~w~~~R 124 (148)
.++|+.|+..|
T Consensus 3 ~DYG~awr~~r 13 (61)
T PF07659_consen 3 HDYGDAWRIMR 13 (61)
T ss_pred ccHHHHHHHHC
Confidence 46788998876
No 49
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=28.35 E-value=2.3e+02 Score=20.31 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=27.4
Q ss_pred hHHHHHHHHhhcCCeeEEEcCCc---------cEEEecCHHHHHHHHh
Q 043622 48 LHRTLSQLSSKHGPILLLNLGTR---------RVLLLSSPSAVEECFT 86 (148)
Q Consensus 48 ~~~~~~~~~~~yg~v~~~~~~~~---------~~v~i~~p~~~~~i~~ 86 (148)
-.+.+.+.+++||+|..+.+... -.|...+++.+..++.
T Consensus 282 ~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~ 329 (352)
T TIGR01661 282 DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAIL 329 (352)
T ss_pred CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHH
Confidence 45678899999999887765322 2566677777766664
No 50
>PHA03049 IMV membrane protein; Provisional
Probab=27.48 E-value=1.1e+02 Score=16.46 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 043622 23 KNLPPNP 29 (148)
Q Consensus 23 ~~~ppgp 29 (148)
...||.|
T Consensus 30 q~~~p~~ 36 (68)
T PHA03049 30 SQNPPSQ 36 (68)
T ss_pred CCCCCCh
Confidence 3444443
No 51
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=26.92 E-value=1.2e+02 Score=18.95 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCCCceeeecchhcccCchHHHHHHHHhh-cCCeeEEEcCCccEEEecCHHHHHHHH
Q 043622 21 KIKNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSK-HGPILLLNLGTRRVLLLSSPSAVEECF 85 (148)
Q Consensus 21 ~~~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~-yg~v~~~~~~~~~~v~i~~p~~~~~i~ 85 (148)
...++|+|+. ..|+++++... .+....++ .+++..++...--+++..+.+..++++
T Consensus 50 ~~~GlpqG~~-lS~~L~~~~l~--------~~d~~i~~~~~~~~~~RY~DD~~i~~~~~~~~~~~~ 106 (158)
T cd01646 50 QTNGLPIGPL-TSRFLANIYLN--------DVDHELKSKLKGVDYVRYVDDIRIFADSKEEAEEIL 106 (158)
T ss_pred CCceEccCcc-hHHHHHHHHHH--------HHHHHHHhccCCceEEEecCcEEEEcCCHHHHHHHH
Confidence 3457888887 67777765432 23333333 445444444444444555656544443
No 52
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=25.60 E-value=31 Score=15.28 Aligned_cols=7 Identities=43% Similarity=1.284 Sum_probs=3.1
Q ss_pred chHHHHH
Q 043622 118 SHWRNLR 124 (148)
Q Consensus 118 ~~w~~~R 124 (148)
++|+..|
T Consensus 20 ~eWk~lR 26 (30)
T PF11616_consen 20 EEWKKLR 26 (30)
T ss_dssp HHHHH--
T ss_pred HHHHHhc
Confidence 4676655
No 53
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=23.51 E-value=1.3e+02 Score=15.74 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=24.4
Q ss_pred CchHHHHHHHHhhcC-CeeEEEcCCccEEEecCHHHHHHHH
Q 043622 46 KPLHRTLSQLSSKHG-PILLLNLGTRRVLLLSSPSAVEECF 85 (148)
Q Consensus 46 ~~~~~~~~~~~~~yg-~v~~~~~~~~~~v~i~~p~~~~~i~ 85 (148)
......+.+..++|| +.+++.....-.+.=.+++.+.+++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~ 63 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIF 63 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHH
Confidence 345678999999999 6666654443333323555555554
No 54
>PLN03120 nucleic acid binding protein; Provisional
Probab=23.15 E-value=2.8e+02 Score=19.57 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=35.3
Q ss_pred hHHHHHHHHhhcCCeeEEEcC------CccEEEecCHHHHHHHHhhCCCCCCCCC
Q 043622 48 LHRTLSQLSSKHGPILLLNLG------TRRVLLLSSPSAVEECFTKSDVVFANRP 96 (148)
Q Consensus 48 ~~~~~~~~~~~yg~v~~~~~~------~~~~v~i~~p~~~~~i~~~~~~~~~~~~ 96 (148)
-...+.+.+..||+|..+.+. +.-.|...+++.++..+..++..+..+.
T Consensus 17 TE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 17 TERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 346788999999998877652 3346667789999888876666555444
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=22.46 E-value=2.1e+02 Score=17.85 Aligned_cols=40 Identities=8% Similarity=0.059 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhcCCeeEEEcC---------CccEEEecCHHHHHHHHhh
Q 043622 48 LHRTLSQLSSKHGPILLLNLG---------TRRVLLLSSPSAVEECFTK 87 (148)
Q Consensus 48 ~~~~~~~~~~~yg~v~~~~~~---------~~~~v~i~~p~~~~~i~~~ 87 (148)
-.+.+.+..++||+|..+.+. +.-.|...+++.++.++..
T Consensus 47 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 47 DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 456888999999988766542 2345667789999998864
No 56
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=21.59 E-value=68 Score=20.42 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCceeeecchhcccCchHHHH-HHHHhhcCC
Q 043622 23 KNLPPNPFPALPIVGHLYLIFKNKPLHRTL-SQLSSKHGP 61 (148)
Q Consensus 23 ~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~-~~~~~~yg~ 61 (148)
.+.+|.|+ .-|++-.++++. ......+ +-.+++|||
T Consensus 77 g~~~~~~p-tdP~iYR~yE~v--~vYG~~~K~~i~E~FGD 113 (150)
T TIGR00673 77 GCIDPVIP-TDPTMYRFYEML--QVYGTTLKAVVHEKFGD 113 (150)
T ss_pred CCCCCCCC-CCchHHHHHHHH--HHhhHHHHHHHHHHhCc
Confidence 34677778 889998888874 3333444 445789996
No 57
>smart00362 RRM_2 RNA recognition motif.
Probab=20.91 E-value=1.3e+02 Score=14.81 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=25.9
Q ss_pred hHHHHHHHHhhcCCeeEEEcC-------CccEEEecCHHHHHHHHh
Q 043622 48 LHRTLSQLSSKHGPILLLNLG-------TRRVLLLSSPSAVEECFT 86 (148)
Q Consensus 48 ~~~~~~~~~~~yg~v~~~~~~-------~~~~v~i~~p~~~~~i~~ 86 (148)
....+.++.++||++..+.+. +.-.+...+++.++.++.
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 57 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIE 57 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHH
Confidence 345777888899987665433 223455678888777765
No 58
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=20.39 E-value=81 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCceeeecchhcccCchHHHHHHHHhhcCC
Q 043622 23 KNLPPNPFPALPIVGHLYLIFKNKPLHRTLSQLSSKHGP 61 (148)
Q Consensus 23 ~~~ppgp~~~~p~~G~~~~~~~~~~~~~~~~~~~~~yg~ 61 (148)
.+++|.++ .-|++-.+.++. .--....-+-.|++||+
T Consensus 77 g~l~~~~P-TDP~iYRfYE~~-qvYG~~lK~lihE~FGD 113 (151)
T COG1513 77 GCLGPVIP-TDPLIYRFYEML-QVYGTTLKALIHEKFGD 113 (151)
T ss_pred CCCCCCCC-CChHHHHHHHHH-HHHchhHHHHHHHHhcc
Confidence 34777777 788877776663 11112233345788985
Done!