Query 043623
Match_columns 359
No_of_seqs 170 out of 2048
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 2.9E-42 6.2E-47 310.9 24.6 332 13-359 4-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 2.8E-38 6E-43 293.3 24.9 286 28-346 3-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 1.2E-38 2.6E-43 286.0 18.7 234 96-336 3-241 (241)
4 COG2226 UbiE Methylase involve 99.8 5.4E-19 1.2E-23 155.1 17.5 168 182-359 41-237 (238)
5 PF01209 Ubie_methyltran: ubiE 99.8 1E-19 2.2E-24 161.3 6.9 157 192-359 45-233 (233)
6 PLN02233 ubiquinone biosynthes 99.8 1.7E-17 3.8E-22 150.2 19.3 160 192-358 71-260 (261)
7 TIGR00740 methyltransferase, p 99.8 1.8E-18 3.9E-23 155.0 10.6 158 193-358 52-238 (239)
8 PTZ00098 phosphoethanolamine N 99.8 2.9E-17 6.3E-22 148.9 16.7 155 182-349 42-204 (263)
9 TIGR02752 MenG_heptapren 2-hep 99.8 4.9E-17 1.1E-21 144.9 17.8 168 182-359 35-231 (231)
10 PRK15451 tRNA cmo(5)U34 methyl 99.8 7.6E-18 1.7E-22 151.5 12.0 152 192-347 54-230 (247)
11 PRK14103 trans-aconitate 2-met 99.7 3E-16 6.4E-21 142.0 15.7 152 182-344 19-181 (255)
12 KOG1540 Ubiquinone biosynthesi 99.7 2.6E-16 5.7E-21 135.8 14.4 144 193-344 99-278 (296)
13 PLN02244 tocopherol O-methyltr 99.7 4.7E-16 1E-20 146.1 17.5 151 193-349 117-280 (340)
14 PRK00216 ubiE ubiquinone/menaq 99.7 4E-15 8.7E-20 133.0 19.0 167 183-359 42-238 (239)
15 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.2E-15 2.5E-20 141.7 14.8 141 193-350 112-259 (340)
16 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 4.2E-15 9.1E-20 131.5 17.8 168 182-359 29-223 (223)
17 PLN02336 phosphoethanolamine N 99.7 2.8E-15 6.2E-20 147.6 16.5 151 183-349 257-416 (475)
18 PF06080 DUF938: Protein of un 99.6 4.1E-15 8.8E-20 126.7 14.3 162 192-359 22-204 (204)
19 PRK15068 tRNA mo(5)U34 methylt 99.6 4.3E-15 9.4E-20 138.2 14.7 153 183-348 113-275 (322)
20 TIGR00452 methyltransferase, p 99.6 4.7E-15 1E-19 136.6 14.7 153 183-348 112-274 (314)
21 PRK11207 tellurite resistance 99.6 6.3E-15 1.4E-19 128.0 14.6 140 182-345 20-168 (197)
22 smart00828 PKS_MT Methyltransf 99.6 3E-15 6.5E-20 132.8 12.8 136 196-349 1-146 (224)
23 PF12847 Methyltransf_18: Meth 99.6 2.1E-15 4.7E-20 118.6 9.5 98 194-294 1-111 (112)
24 PLN02396 hexaprenyldihydroxybe 99.6 2.3E-15 5E-20 139.3 11.1 143 194-348 131-290 (322)
25 PRK11873 arsM arsenite S-adeno 99.6 1.2E-14 2.6E-19 132.8 15.1 146 192-348 75-231 (272)
26 PF13489 Methyltransf_23: Meth 99.6 9.1E-15 2E-19 122.4 12.5 135 192-344 20-160 (161)
27 COG2230 Cfa Cyclopropane fatty 99.6 1.2E-14 2.7E-19 129.9 13.8 156 182-349 62-225 (283)
28 PF13847 Methyltransf_31: Meth 99.6 2.4E-15 5.3E-20 125.2 8.2 137 194-339 3-152 (152)
29 PRK06922 hypothetical protein; 99.6 1E-14 2.2E-19 143.4 12.7 142 154-300 377-543 (677)
30 PRK05785 hypothetical protein; 99.6 8.3E-14 1.8E-18 123.4 17.0 154 193-359 50-224 (226)
31 PRK08317 hypothetical protein; 99.6 5.2E-14 1.1E-18 125.7 15.9 157 183-348 10-177 (241)
32 PRK01683 trans-aconitate 2-met 99.6 4.8E-14 1.1E-18 127.8 15.7 151 182-342 21-182 (258)
33 PF02353 CMAS: Mycolic acid cy 99.6 2.2E-14 4.8E-19 130.0 13.0 160 182-349 52-219 (273)
34 PRK11036 putative S-adenosyl-L 99.6 8.3E-15 1.8E-19 132.5 10.2 151 193-351 43-211 (255)
35 TIGR00477 tehB tellurite resis 99.6 8.9E-14 1.9E-18 120.5 14.1 141 182-346 20-168 (195)
36 PRK06202 hypothetical protein; 99.6 6E-14 1.3E-18 125.1 13.2 147 193-350 59-225 (232)
37 TIGR02021 BchM-ChlM magnesium 99.5 8.1E-14 1.8E-18 123.2 13.6 144 193-349 54-208 (219)
38 COG4106 Tam Trans-aconitate me 99.5 6.1E-14 1.3E-18 118.4 11.5 172 177-359 15-203 (257)
39 PF08241 Methyltransf_11: Meth 99.5 5E-14 1.1E-18 106.9 7.7 88 199-292 1-95 (95)
40 TIGR03587 Pse_Me-ase pseudamin 99.5 3.2E-13 6.8E-18 117.7 13.4 103 192-299 41-147 (204)
41 KOG1270 Methyltransferases [Co 99.5 5E-14 1.1E-18 122.6 7.7 142 195-348 90-250 (282)
42 PRK10258 biotin biosynthesis p 99.5 1.7E-12 3.7E-17 117.1 17.1 146 182-342 32-182 (251)
43 TIGR02072 BioC biotin biosynth 99.5 6.4E-13 1.4E-17 118.7 13.7 136 194-346 34-175 (240)
44 TIGR00537 hemK_rel_arch HemK-r 99.5 1.2E-12 2.6E-17 111.9 14.6 134 193-359 18-177 (179)
45 PRK11705 cyclopropane fatty ac 99.5 6.2E-13 1.4E-17 126.5 14.0 153 183-349 158-314 (383)
46 PRK12335 tellurite resistance 99.5 1.1E-12 2.3E-17 120.7 14.1 141 182-346 110-258 (287)
47 PRK07580 Mg-protoporphyrin IX 99.5 1.3E-12 2.8E-17 116.3 14.0 145 193-349 62-216 (230)
48 PRK04266 fibrillarin; Provisio 99.4 2.7E-12 5.9E-17 113.3 15.4 139 192-358 70-224 (226)
49 PF08242 Methyltransf_12: Meth 99.4 3.2E-14 7E-19 109.4 2.6 87 199-290 1-99 (99)
50 smart00138 MeTrc Methyltransfe 99.4 1E-12 2.2E-17 119.1 12.4 100 193-295 98-243 (264)
51 PLN02336 phosphoethanolamine N 99.4 1.5E-12 3.2E-17 128.3 14.3 144 182-345 27-180 (475)
52 PRK08287 cobalt-precorrin-6Y C 99.4 1.9E-12 4.2E-17 111.5 13.3 120 192-347 29-156 (187)
53 COG2227 UbiG 2-polyprenyl-3-me 99.4 3.3E-13 7.1E-18 116.8 6.7 143 194-349 59-217 (243)
54 PF08003 Methyltransf_9: Prote 99.4 1.9E-12 4.2E-17 116.0 11.4 152 182-348 105-268 (315)
55 PF13649 Methyltransf_25: Meth 99.4 5.8E-13 1.3E-17 102.8 6.8 88 198-288 1-101 (101)
56 TIGR03438 probable methyltrans 99.4 4.5E-12 9.9E-17 117.2 12.9 97 193-292 62-175 (301)
57 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.3E-11 2.7E-16 108.2 14.1 131 193-347 33-187 (213)
58 PF03848 TehB: Tellurite resis 99.4 5.2E-12 1.1E-16 107.6 10.7 140 182-345 20-167 (192)
59 PLN02585 magnesium protoporphy 99.4 6.4E-12 1.4E-16 116.1 11.9 142 194-348 144-300 (315)
60 TIGR00138 gidB 16S rRNA methyl 99.4 8.9E-12 1.9E-16 106.5 11.7 119 195-351 43-173 (181)
61 PRK15001 SAM-dependent 23S rib 99.4 1.4E-11 3.1E-16 116.1 14.2 108 182-294 218-340 (378)
62 PLN03075 nicotianamine synthas 99.3 6.6E-12 1.4E-16 113.8 10.5 137 193-359 122-274 (296)
63 PRK00107 gidB 16S rRNA methylt 99.3 3.2E-11 6.9E-16 103.4 13.9 118 193-348 44-170 (187)
64 PRK05134 bifunctional 3-demeth 99.3 2.1E-11 4.5E-16 108.8 12.7 144 193-348 47-206 (233)
65 PF05891 Methyltransf_PK: AdoM 99.3 6.1E-12 1.3E-16 107.9 8.6 140 194-350 55-204 (218)
66 PRK09489 rsmC 16S ribosomal RN 99.3 4.8E-11 1E-15 111.8 14.5 108 183-295 187-304 (342)
67 TIGR02081 metW methionine bios 99.3 2.5E-11 5.4E-16 105.2 11.4 141 193-348 12-168 (194)
68 PTZ00146 fibrillarin; Provisio 99.3 1.9E-10 4.2E-15 103.9 16.5 133 192-350 130-274 (293)
69 PF05401 NodS: Nodulation prot 99.3 8.1E-12 1.8E-16 105.3 7.0 132 192-348 41-180 (201)
70 PRK13255 thiopurine S-methyltr 99.3 7.6E-11 1.7E-15 103.6 12.8 132 192-347 35-190 (218)
71 TIGR01983 UbiG ubiquinone bios 99.3 4E-11 8.7E-16 106.2 10.9 142 194-348 45-204 (224)
72 COG2813 RsmC 16S RNA G1207 met 99.3 1.3E-10 2.9E-15 104.4 14.1 109 182-295 148-267 (300)
73 KOG2361 Predicted methyltransf 99.2 1.4E-11 2.9E-16 106.1 6.8 145 196-345 73-235 (264)
74 PF05175 MTS: Methyltransferas 99.2 4.2E-11 9E-16 101.5 9.1 99 194-295 31-141 (170)
75 TIGR02469 CbiT precorrin-6Y C5 99.2 7.6E-11 1.6E-15 94.1 10.1 100 184-293 11-121 (124)
76 TIGR03534 RF_mod_PrmC protein- 99.2 1.7E-10 3.6E-15 104.0 12.7 124 194-349 87-243 (251)
77 PRK09328 N5-glutamine S-adenos 99.2 3.7E-10 8E-15 103.3 15.1 136 192-359 106-275 (275)
78 PF07021 MetW: Methionine bios 99.2 3.1E-10 6.7E-15 95.6 11.7 140 192-350 11-170 (193)
79 PRK13256 thiopurine S-methyltr 99.2 7.1E-10 1.5E-14 97.3 14.0 101 193-298 42-167 (226)
80 PRK00517 prmA ribosomal protei 99.2 8.6E-10 1.9E-14 99.4 14.7 122 193-356 118-247 (250)
81 PRK00121 trmB tRNA (guanine-N( 99.2 8.5E-11 1.8E-15 102.4 7.6 98 194-294 40-156 (202)
82 PLN02232 ubiquinone biosynthes 99.2 1.9E-10 4.2E-15 96.4 9.4 130 222-358 1-159 (160)
83 PRK14968 putative methyltransf 99.1 1.3E-09 2.9E-14 93.6 14.8 124 193-349 22-175 (188)
84 PRK14966 unknown domain/N5-glu 99.1 1.4E-09 3E-14 103.0 15.5 134 193-358 250-417 (423)
85 KOG4300 Predicted methyltransf 99.1 7.2E-10 1.6E-14 93.2 10.6 148 194-350 76-235 (252)
86 PRK00377 cbiT cobalt-precorrin 99.1 1E-09 2.2E-14 95.4 12.1 98 185-292 33-143 (198)
87 TIGR00536 hemK_fam HemK family 99.1 2.1E-09 4.6E-14 98.7 14.6 131 196-358 116-281 (284)
88 PHA03411 putative methyltransf 99.1 1.4E-09 3.1E-14 97.2 13.0 124 194-342 64-209 (279)
89 COG4123 Predicted O-methyltran 99.1 1.1E-09 2.3E-14 96.6 12.0 125 192-348 42-195 (248)
90 PRK13944 protein-L-isoaspartat 99.1 5.8E-10 1.3E-14 97.4 10.1 97 184-293 64-172 (205)
91 PRK11188 rrmJ 23S rRNA methylt 99.1 1.8E-09 3.8E-14 94.5 13.0 105 183-295 41-166 (209)
92 COG2242 CobL Precorrin-6B meth 99.1 9.3E-10 2E-14 92.2 10.5 100 185-295 27-136 (187)
93 PF12147 Methyltransf_20: Puta 99.1 3.1E-09 6.8E-14 94.5 14.2 155 193-359 134-311 (311)
94 PRK11088 rrmA 23S rRNA methylt 99.0 7.4E-10 1.6E-14 101.1 9.3 90 194-295 85-182 (272)
95 PRK13942 protein-L-isoaspartat 99.0 1.4E-09 3.1E-14 95.4 10.4 98 183-293 67-175 (212)
96 TIGR00091 tRNA (guanine-N(7)-) 99.0 5.8E-10 1.3E-14 96.6 7.7 97 194-294 16-132 (194)
97 PF05724 TPMT: Thiopurine S-me 99.0 1.4E-09 3E-14 95.5 10.1 132 192-347 35-190 (218)
98 TIGR03533 L3_gln_methyl protei 99.0 1.3E-09 2.9E-14 99.8 10.1 96 194-292 121-249 (284)
99 PRK11805 N5-glutamine S-adenos 99.0 5.1E-09 1.1E-13 96.9 13.6 94 196-292 135-261 (307)
100 TIGR00080 pimt protein-L-isoas 99.0 2.3E-09 5.1E-14 94.4 10.3 98 183-293 68-176 (215)
101 PRK01544 bifunctional N5-gluta 99.0 7.2E-09 1.6E-13 102.3 14.3 131 194-356 138-303 (506)
102 PRK14967 putative methyltransf 99.0 1.2E-08 2.6E-13 90.4 13.9 102 192-297 34-162 (223)
103 PRK07402 precorrin-6B methylas 99.0 3.8E-09 8.2E-14 91.7 10.4 101 184-295 32-143 (196)
104 PRK04457 spermidine synthase; 99.0 1.9E-09 4.1E-14 97.6 8.4 97 193-293 65-176 (262)
105 TIGR00406 prmA ribosomal prote 99.0 9.1E-09 2E-13 94.6 12.8 94 193-295 158-260 (288)
106 PRK14121 tRNA (guanine-N(7)-)- 98.9 4.4E-09 9.4E-14 99.0 10.2 106 183-294 113-235 (390)
107 PF13659 Methyltransf_26: Meth 98.9 2.3E-09 5E-14 84.8 6.2 95 196-294 2-115 (117)
108 COG2264 PrmA Ribosomal protein 98.9 2.1E-08 4.6E-13 90.8 12.8 127 192-355 160-296 (300)
109 cd02440 AdoMet_MTases S-adenos 98.9 7.3E-09 1.6E-13 78.9 8.6 92 197-293 1-103 (107)
110 KOG1271 Methyltransferases [Ge 98.9 4.8E-09 1E-13 86.6 7.7 122 196-349 69-207 (227)
111 PF06325 PrmA: Ribosomal prote 98.9 1.2E-08 2.7E-13 93.1 10.9 127 192-358 159-294 (295)
112 TIGR00438 rrmJ cell division p 98.9 2.4E-08 5.3E-13 86.0 12.1 95 192-293 30-145 (188)
113 COG2890 HemK Methylase of poly 98.9 5.2E-08 1.1E-12 88.9 14.2 129 197-357 113-274 (280)
114 PF05148 Methyltransf_8: Hypot 98.9 7.7E-08 1.7E-12 82.0 14.0 156 157-356 31-194 (219)
115 TIGR03704 PrmC_rel_meth putati 98.9 4.7E-08 1E-12 88.0 13.4 120 195-346 87-239 (251)
116 KOG2899 Predicted methyltransf 98.8 1.4E-08 3E-13 87.6 8.6 153 182-344 46-254 (288)
117 TIGR01177 conserved hypothetic 98.8 2.7E-08 5.8E-13 93.4 11.4 120 192-348 180-316 (329)
118 PRK00312 pcm protein-L-isoaspa 98.8 3.5E-08 7.5E-13 86.7 10.4 90 192-294 76-175 (212)
119 PRK01581 speE spermidine synth 98.8 8.1E-08 1.7E-12 89.4 12.7 98 193-293 149-267 (374)
120 PRK00811 spermidine synthase; 98.8 2.5E-08 5.5E-13 91.3 9.0 97 193-292 75-189 (283)
121 PF08100 Dimerisation: Dimeris 98.7 4.6E-09 1E-13 69.1 2.2 49 30-78 1-51 (51)
122 PRK13943 protein-L-isoaspartat 98.7 5.8E-08 1.2E-12 90.1 9.2 97 184-293 72-179 (322)
123 COG4976 Predicted methyltransf 98.7 3.9E-08 8.4E-13 84.3 6.6 144 183-348 116-266 (287)
124 smart00650 rADc Ribosomal RNA 98.7 6.3E-08 1.4E-12 81.9 8.0 88 183-275 4-99 (169)
125 PRK03612 spermidine synthase; 98.7 1.3E-07 2.9E-12 93.8 11.1 97 193-293 296-414 (521)
126 PF01739 CheR: CheR methyltran 98.7 5.1E-08 1.1E-12 84.0 7.1 98 194-294 31-175 (196)
127 COG2519 GCD14 tRNA(1-methylade 98.7 2.1E-07 4.6E-12 81.6 11.0 104 183-298 85-199 (256)
128 KOG3045 Predicted RNA methylas 98.7 7.4E-07 1.6E-11 77.8 14.0 156 157-358 139-302 (325)
129 PLN02366 spermidine synthase 98.7 1.1E-07 2.3E-12 87.9 9.2 98 193-293 90-205 (308)
130 PLN02672 methionine S-methyltr 98.7 2.8E-07 6.1E-12 97.0 13.4 65 195-259 119-210 (1082)
131 TIGR00417 speE spermidine synt 98.6 1E-07 2.2E-12 86.9 8.6 98 193-293 71-185 (270)
132 PHA03412 putative methyltransf 98.6 2.2E-07 4.7E-12 81.5 9.5 89 195-283 50-155 (241)
133 COG2518 Pcm Protein-L-isoaspar 98.6 3E-07 6.5E-12 78.9 9.8 98 183-295 63-170 (209)
134 PF01135 PCMT: Protein-L-isoas 98.6 6.9E-08 1.5E-12 84.1 5.9 99 182-293 62-171 (209)
135 PLN02781 Probable caffeoyl-CoA 98.6 2.4E-07 5.2E-12 82.5 9.3 98 192-297 66-181 (234)
136 PRK10611 chemotaxis methyltran 98.6 2.4E-07 5.1E-12 84.4 8.9 97 195-294 116-262 (287)
137 COG1352 CheR Methylase of chem 98.5 9.1E-07 2E-11 79.6 11.8 98 194-294 96-241 (268)
138 PF03291 Pox_MCEL: mRNA cappin 98.5 2E-07 4.4E-12 86.8 7.7 96 194-293 62-185 (331)
139 PF04672 Methyltransf_19: S-ad 98.5 4.6E-07 9.9E-12 80.8 9.4 141 194-344 68-233 (267)
140 PRK10901 16S rRNA methyltransf 98.5 4.2E-07 9.1E-12 88.3 9.8 105 192-299 242-377 (427)
141 KOG3010 Methyltransferase [Gen 98.5 2.9E-07 6.2E-12 79.8 7.4 96 194-296 33-139 (261)
142 PF08704 GCD14: tRNA methyltra 98.5 9E-07 2E-11 78.8 10.3 126 183-348 31-172 (247)
143 PRK14904 16S rRNA methyltransf 98.5 9.2E-07 2E-11 86.4 11.4 105 192-299 248-382 (445)
144 PRK11727 23S rRNA mA1618 methy 98.5 9.8E-07 2.1E-11 81.7 10.9 144 194-348 114-293 (321)
145 PF05219 DREV: DREV methyltran 98.5 1.2E-06 2.7E-11 77.2 10.9 142 194-350 94-243 (265)
146 TIGR00563 rsmB ribosomal RNA s 98.5 5.6E-07 1.2E-11 87.4 9.7 106 192-300 236-374 (426)
147 PRK14902 16S rRNA methyltransf 98.5 7.9E-07 1.7E-11 86.9 10.6 103 192-297 248-382 (444)
148 PRK14896 ksgA 16S ribosomal RN 98.4 1E-06 2.2E-11 79.8 8.7 81 182-267 19-105 (258)
149 PF02390 Methyltransf_4: Putat 98.4 7.9E-07 1.7E-11 76.8 7.5 94 197-294 20-133 (195)
150 PRK14901 16S rRNA methyltransf 98.4 1.6E-06 3.4E-11 84.5 10.3 103 192-297 250-387 (434)
151 TIGR00755 ksgA dimethyladenosi 98.4 1.1E-06 2.4E-11 79.3 8.2 89 182-278 19-115 (253)
152 PRK00274 ksgA 16S ribosomal RN 98.4 9.1E-07 2E-11 80.7 7.6 81 182-267 32-119 (272)
153 KOG1500 Protein arginine N-met 98.4 2E-06 4.3E-11 77.7 9.5 94 194-291 177-279 (517)
154 TIGR00446 nop2p NOL1/NOP2/sun 98.4 2.9E-06 6.2E-11 77.1 10.6 103 192-297 69-202 (264)
155 PRK14903 16S rRNA methyltransf 98.3 2.9E-06 6.2E-11 82.4 10.6 105 192-299 235-371 (431)
156 COG3963 Phospholipid N-methylt 98.3 4.7E-06 1E-10 68.2 9.8 110 182-296 38-158 (194)
157 PRK13168 rumA 23S rRNA m(5)U19 98.3 4.7E-06 1E-10 81.5 11.6 90 192-292 295-398 (443)
158 PF05185 PRMT5: PRMT5 arginine 98.3 2.2E-06 4.8E-11 83.1 8.5 127 155-290 151-293 (448)
159 PF10294 Methyltransf_16: Puta 98.3 2.2E-06 4.8E-11 72.7 7.4 101 192-297 43-159 (173)
160 PTZ00338 dimethyladenosine tra 98.3 3.1E-06 6.6E-11 77.8 8.1 88 182-274 26-122 (294)
161 PRK04148 hypothetical protein; 98.3 1.2E-05 2.6E-10 64.4 10.4 93 194-299 16-114 (134)
162 KOG1975 mRNA cap methyltransfe 98.3 2.7E-06 5.8E-11 76.7 7.3 103 183-292 109-235 (389)
163 PF01596 Methyltransf_3: O-met 98.2 2E-06 4.4E-11 74.7 5.6 95 193-296 44-156 (205)
164 PLN02476 O-methyltransferase 98.2 5.3E-06 1.2E-10 75.1 8.5 98 192-297 116-231 (278)
165 KOG1541 Predicted protein carb 98.2 2.9E-06 6.2E-11 72.6 6.1 93 194-292 50-158 (270)
166 PF08123 DOT1: Histone methyla 98.2 4.5E-06 9.8E-11 72.5 6.8 110 182-299 32-163 (205)
167 COG2263 Predicted RNA methylas 98.2 5.9E-06 1.3E-10 69.3 7.1 69 193-262 44-118 (198)
168 KOG1331 Predicted methyltransf 98.2 4.4E-06 9.6E-11 74.4 6.5 97 192-295 43-144 (293)
169 KOG1499 Protein arginine N-met 98.1 3.9E-06 8.5E-11 76.9 6.2 94 194-291 60-164 (346)
170 PF11968 DUF3321: Putative met 98.1 1.2E-05 2.6E-10 69.2 8.6 120 195-349 52-183 (219)
171 KOG1661 Protein-L-isoaspartate 98.1 6.4E-06 1.4E-10 70.0 6.5 100 183-293 71-192 (237)
172 COG4122 Predicted O-methyltran 98.1 1E-05 2.2E-10 70.5 8.0 100 192-300 57-171 (219)
173 PLN02823 spermine synthase 98.1 1E-05 2.2E-10 75.6 8.5 96 193-292 102-218 (336)
174 PRK10909 rsmD 16S rRNA m(2)G96 98.1 7.2E-06 1.6E-10 71.0 6.9 96 194-297 53-161 (199)
175 PF09243 Rsm22: Mitochondrial 98.1 2.1E-05 4.5E-10 71.8 9.8 102 194-300 33-145 (274)
176 COG0421 SpeE Spermidine syntha 98.1 1.2E-05 2.7E-10 73.0 7.8 97 193-293 75-189 (282)
177 PRK00536 speE spermidine synth 98.0 2.7E-05 5.9E-10 70.0 8.9 87 193-292 71-169 (262)
178 COG0220 Predicted S-adenosylme 98.0 2.1E-05 4.6E-10 69.3 7.6 94 196-293 50-163 (227)
179 PRK11783 rlmL 23S rRNA m(2)G24 98.0 1.3E-05 2.9E-10 82.5 7.3 96 194-293 538-655 (702)
180 PRK15128 23S rRNA m(5)C1962 me 98.0 3E-05 6.4E-10 74.3 8.7 99 193-295 219-340 (396)
181 KOG2940 Predicted methyltransf 97.9 3.5E-05 7.5E-10 66.4 7.7 141 193-345 71-225 (325)
182 TIGR00478 tly hemolysin TlyA f 97.9 0.00019 4.2E-09 63.3 12.8 138 182-349 64-219 (228)
183 PF01564 Spermine_synth: Sperm 97.9 1.2E-05 2.7E-10 72.0 5.2 99 193-294 75-191 (246)
184 PLN02589 caffeoyl-CoA O-methyl 97.9 3E-05 6.5E-10 69.3 7.6 97 192-297 77-192 (247)
185 TIGR03439 methyl_EasF probable 97.9 5.5E-05 1.2E-09 70.1 9.3 97 193-292 75-195 (319)
186 PRK03522 rumB 23S rRNA methylu 97.9 3.8E-05 8.1E-10 71.7 8.4 64 194-259 173-247 (315)
187 PF04816 DUF633: Family of unk 97.9 5.8E-05 1.3E-09 65.5 8.8 124 198-358 1-138 (205)
188 KOG0820 Ribosomal RNA adenine 97.9 3.1E-05 6.7E-10 68.4 6.4 74 182-259 48-130 (315)
189 PRK00050 16S rRNA m(4)C1402 me 97.8 3.2E-05 6.9E-10 70.8 6.0 79 182-262 9-100 (296)
190 TIGR00095 RNA methyltransferas 97.8 6.4E-05 1.4E-09 64.7 7.1 96 194-297 49-161 (189)
191 COG2521 Predicted archaeal met 97.8 0.00025 5.4E-09 61.5 10.4 126 193-348 133-278 (287)
192 TIGR00479 rumA 23S rRNA (uraci 97.8 9E-05 1.9E-09 72.3 8.9 91 192-292 290-394 (431)
193 COG0357 GidB Predicted S-adeno 97.8 0.00015 3.3E-09 63.0 9.3 119 195-348 68-196 (215)
194 PF03141 Methyltransf_29: Puta 97.8 1.5E-05 3.2E-10 76.5 2.6 96 194-298 117-223 (506)
195 KOG3191 Predicted N6-DNA-methy 97.7 0.00056 1.2E-08 57.0 11.3 68 195-262 44-120 (209)
196 COG0030 KsgA Dimethyladenosine 97.7 0.00018 3.9E-09 64.3 9.1 91 182-276 20-118 (259)
197 PF07942 N2227: N2227-like pro 97.7 0.00036 7.9E-09 62.8 11.1 135 193-347 55-242 (270)
198 PF02527 GidB: rRNA small subu 97.7 5.1E-05 1.1E-09 64.8 4.9 89 197-294 51-148 (184)
199 PRK01544 bifunctional N5-gluta 97.6 0.00017 3.7E-09 71.5 7.8 96 194-293 347-461 (506)
200 KOG2904 Predicted methyltransf 97.6 0.00012 2.6E-09 64.8 5.7 67 193-259 147-229 (328)
201 TIGR02085 meth_trns_rumB 23S r 97.5 0.00025 5.5E-09 67.7 7.4 64 194-259 233-307 (374)
202 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 4.8E-05 1E-09 68.0 2.0 136 194-347 56-239 (256)
203 TIGR00027 mthyl_TIGR00027 meth 97.5 0.0013 2.8E-08 59.5 11.0 144 193-345 80-248 (260)
204 COG4798 Predicted methyltransf 97.5 0.0015 3.3E-08 55.1 10.3 138 191-345 45-203 (238)
205 PRK11760 putative 23S rRNA C24 97.5 0.0043 9.4E-08 57.5 14.2 129 192-349 209-342 (357)
206 PF13679 Methyltransf_32: Meth 97.4 0.00055 1.2E-08 55.9 6.6 84 192-279 23-122 (141)
207 COG0293 FtsJ 23S rRNA methylas 97.3 0.0016 3.6E-08 56.0 9.5 107 182-296 34-161 (205)
208 KOG3987 Uncharacterized conser 97.3 7.9E-05 1.7E-09 63.2 1.1 140 193-349 111-262 (288)
209 PF00398 RrnaAD: Ribosomal RNA 97.3 0.00051 1.1E-08 62.3 6.3 91 182-280 20-120 (262)
210 PRK04338 N(2),N(2)-dimethylgua 97.3 0.00068 1.5E-08 64.7 7.2 90 195-293 58-157 (382)
211 KOG3115 Methyltransferase-like 97.2 0.00046 1E-08 58.5 4.6 98 195-295 61-184 (249)
212 PF02475 Met_10: Met-10+ like- 97.2 0.00028 6E-09 61.0 3.4 90 192-290 99-198 (200)
213 PF09339 HTH_IclR: IclR helix- 97.2 0.00017 3.8E-09 48.0 1.5 46 38-86 6-51 (52)
214 PF01728 FtsJ: FtsJ-like methy 97.1 0.00036 7.8E-09 59.5 3.2 106 182-295 10-140 (181)
215 KOG3420 Predicted RNA methylas 97.1 0.00084 1.8E-08 53.9 4.5 68 194-262 48-124 (185)
216 COG5459 Predicted rRNA methyla 97.1 0.00054 1.2E-08 62.8 3.8 101 195-298 114-229 (484)
217 KOG3201 Uncharacterized conser 97.1 0.00027 5.8E-09 57.7 1.6 97 195-296 30-142 (201)
218 COG4076 Predicted RNA methylas 97.1 0.0011 2.3E-08 55.6 5.2 95 196-295 34-136 (252)
219 PF09445 Methyltransf_15: RNA 97.0 0.00024 5.2E-09 59.1 1.3 63 196-260 1-77 (163)
220 COG1889 NOP1 Fibrillarin-like 97.0 0.052 1.1E-06 46.4 15.1 141 192-358 74-228 (231)
221 COG3897 Predicted methyltransf 97.0 0.0029 6.4E-08 53.5 7.4 104 192-301 77-186 (218)
222 COG0500 SmtA SAM-dependent met 97.0 0.0055 1.2E-07 49.6 9.2 95 198-299 52-160 (257)
223 KOG2798 Putative trehalase [Ca 97.0 0.0083 1.8E-07 54.4 10.5 137 195-348 151-338 (369)
224 PF03059 NAS: Nicotianamine sy 97.0 0.0025 5.4E-08 57.7 7.2 95 194-292 120-228 (276)
225 COG2384 Predicted SAM-dependen 97.0 0.016 3.5E-07 50.2 11.6 118 194-348 16-144 (226)
226 COG4262 Predicted spermidine s 96.9 0.0062 1.3E-07 56.4 9.5 96 193-294 288-407 (508)
227 COG4301 Uncharacterized conser 96.9 0.0062 1.3E-07 53.4 9.0 97 193-292 77-191 (321)
228 PF01269 Fibrillarin: Fibrilla 96.8 0.024 5.1E-07 49.4 11.9 140 192-357 71-225 (229)
229 KOG1269 SAM-dependent methyltr 96.8 0.0014 3E-08 61.9 4.3 103 192-300 108-221 (364)
230 PRK11933 yebU rRNA (cytosine-C 96.7 0.01 2.3E-07 58.1 10.1 99 192-293 111-241 (470)
231 smart00346 HTH_ICLR helix_turn 96.6 0.0018 4E-08 48.4 3.3 57 38-104 8-64 (91)
232 TIGR02143 trmA_only tRNA (urac 96.6 0.0014 3.1E-08 62.0 3.2 51 196-248 199-256 (353)
233 TIGR00006 S-adenosyl-methyltra 96.6 0.006 1.3E-07 56.1 7.1 79 182-262 10-102 (305)
234 KOG2915 tRNA(1-methyladenosine 96.6 0.011 2.4E-07 52.6 8.2 105 182-297 95-213 (314)
235 PF07091 FmrO: Ribosomal RNA m 96.6 0.0036 7.8E-08 55.4 5.1 99 193-296 104-210 (251)
236 TIGR01444 fkbM_fam methyltrans 96.6 0.0028 6.1E-08 51.6 4.2 52 197-248 1-59 (143)
237 PF13578 Methyltransf_24: Meth 96.5 0.0012 2.7E-08 50.9 1.8 90 199-294 1-105 (106)
238 PF01170 UPF0020: Putative RNA 96.5 0.0062 1.4E-07 51.9 6.3 92 192-283 26-143 (179)
239 smart00550 Zalpha Z-DNA-bindin 96.5 0.0033 7.2E-08 44.3 3.8 59 36-103 7-66 (68)
240 PRK05031 tRNA (uracil-5-)-meth 96.5 0.0017 3.7E-08 61.7 2.8 51 196-248 208-265 (362)
241 COG3315 O-Methyltransferase in 96.5 0.0089 1.9E-07 55.1 7.3 146 194-345 92-262 (297)
242 KOG1709 Guanidinoacetate methy 96.5 0.019 4.2E-07 49.4 8.5 99 193-296 100-208 (271)
243 PF02384 N6_Mtase: N-6 DNA Met 96.4 0.0085 1.9E-07 55.7 6.7 101 192-295 44-184 (311)
244 COG2520 Predicted methyltransf 96.4 0.019 4.2E-07 53.5 8.8 98 193-300 187-295 (341)
245 PF04989 CmcI: Cephalosporin h 96.3 0.012 2.6E-07 50.8 6.7 99 194-298 32-151 (206)
246 PF11312 DUF3115: Protein of u 96.3 0.007 1.5E-07 55.2 5.5 98 195-295 87-243 (315)
247 KOG4589 Cell division protein 96.3 0.023 5.1E-07 47.8 8.1 97 192-295 67-185 (232)
248 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.025 5.5E-07 58.6 10.2 100 193-295 189-348 (702)
249 PF03602 Cons_hypoth95: Conser 96.3 0.0072 1.6E-07 51.7 5.0 98 194-298 42-156 (183)
250 COG1041 Predicted DNA modifica 96.2 0.073 1.6E-06 49.5 11.7 99 192-295 195-311 (347)
251 TIGR02987 met_A_Alw26 type II 96.2 0.014 3.1E-07 58.4 7.7 67 194-260 31-120 (524)
252 COG1414 IclR Transcriptional r 96.0 0.0053 1.2E-07 55.1 3.3 57 38-104 7-63 (246)
253 PF01022 HTH_5: Bacterial regu 96.0 0.0036 7.8E-08 40.6 1.5 44 37-85 4-47 (47)
254 PRK11569 transcriptional repre 95.9 0.0073 1.6E-07 55.2 3.5 58 38-105 31-88 (274)
255 PF12840 HTH_20: Helix-turn-he 95.9 0.0046 9.9E-08 42.6 1.6 54 30-87 5-58 (61)
256 PRK10163 DNA-binding transcrip 95.8 0.0086 1.9E-07 54.6 3.6 57 38-104 28-84 (271)
257 TIGR02431 pcaR_pcaU beta-ketoa 95.8 0.0083 1.8E-07 53.9 3.4 55 38-104 12-66 (248)
258 TIGR00308 TRM1 tRNA(guanine-26 95.7 0.03 6.4E-07 53.4 7.0 90 196-294 46-147 (374)
259 PF02082 Rrf2: Transcriptional 95.7 0.016 3.4E-07 42.6 4.0 47 49-104 24-70 (83)
260 cd00092 HTH_CRP helix_turn_hel 95.6 0.056 1.2E-06 37.5 6.6 44 49-103 24-67 (67)
261 KOG2918 Carboxymethyl transfer 95.6 0.069 1.5E-06 48.6 8.4 146 192-348 85-278 (335)
262 PRK09834 DNA-binding transcrip 95.6 0.011 2.3E-07 53.8 3.3 62 38-109 14-75 (263)
263 KOG1663 O-methyltransferase [S 95.6 0.039 8.5E-07 48.1 6.5 100 192-299 71-188 (237)
264 PF14947 HTH_45: Winged helix- 95.6 0.0081 1.7E-07 43.5 2.0 57 39-109 10-66 (77)
265 PF08461 HTH_12: Ribonuclease 95.5 0.011 2.3E-07 41.4 2.3 59 40-106 3-63 (66)
266 PRK15090 DNA-binding transcrip 95.5 0.013 2.9E-07 52.9 3.5 57 38-105 17-73 (257)
267 COG1092 Predicted SAM-dependen 95.4 0.028 6E-07 53.6 5.5 99 194-296 217-338 (393)
268 PRK10857 DNA-binding transcrip 95.4 0.037 8E-07 46.3 5.6 61 30-103 9-69 (164)
269 PRK10141 DNA-binding transcrip 95.4 0.017 3.7E-07 45.3 3.4 68 27-103 8-75 (117)
270 COG1189 Predicted rRNA methyla 95.3 0.1 2.3E-06 45.8 8.4 148 183-349 69-226 (245)
271 PF01795 Methyltransf_5: MraW 95.2 0.033 7.2E-07 51.3 5.3 65 182-248 10-80 (310)
272 COG4627 Uncharacterized protei 95.2 0.017 3.6E-07 47.1 2.9 40 252-294 47-86 (185)
273 PF13463 HTH_27: Winged helix 95.2 0.017 3.7E-07 40.4 2.6 53 48-105 16-68 (68)
274 smart00419 HTH_CRP helix_turn_ 95.2 0.039 8.4E-07 35.5 4.1 36 49-87 7-42 (48)
275 PF01861 DUF43: Protein of unk 95.1 0.29 6.4E-06 43.2 10.5 125 194-348 44-179 (243)
276 PF01978 TrmB: Sugar-specific 94.9 0.0084 1.8E-07 42.2 0.5 47 37-87 10-56 (68)
277 PHA00738 putative HTH transcri 94.9 0.028 6E-07 42.9 3.1 61 36-105 13-73 (108)
278 PF13412 HTH_24: Winged helix- 94.9 0.02 4.3E-07 37.2 2.0 44 37-84 5-48 (48)
279 PF05971 Methyltransf_10: Prot 94.8 0.45 9.7E-06 43.7 11.4 75 194-268 102-193 (299)
280 PLN02668 indole-3-acetate carb 94.7 1.2 2.7E-05 42.4 14.5 73 194-266 63-176 (386)
281 PF04703 FaeA: FaeA-like prote 94.7 0.032 7E-07 38.3 2.8 45 40-87 5-49 (62)
282 COG1064 AdhP Zn-dependent alco 94.6 0.3 6.5E-06 45.6 9.9 93 192-297 164-262 (339)
283 PF04072 LCM: Leucine carboxyl 94.5 0.056 1.2E-06 46.1 4.7 85 193-277 77-182 (183)
284 PF09012 FeoC: FeoC like trans 94.4 0.025 5.4E-07 39.9 1.8 44 40-87 5-48 (69)
285 COG0742 N6-adenine-specific me 94.4 0.2 4.2E-06 42.7 7.4 100 194-298 43-157 (187)
286 PRK03902 manganese transport t 94.3 0.055 1.2E-06 44.1 4.0 51 48-109 20-70 (142)
287 PF04967 HTH_10: HTH DNA bindi 94.3 0.093 2E-06 34.8 4.2 42 29-77 6-47 (53)
288 PRK11512 DNA-binding transcrip 94.3 0.26 5.5E-06 40.2 7.8 66 38-109 43-108 (144)
289 TIGR02010 IscR iron-sulfur clu 94.1 0.073 1.6E-06 43.0 4.3 47 49-104 24-70 (135)
290 PF13601 HTH_34: Winged helix 94.1 0.019 4E-07 41.9 0.7 66 36-106 1-66 (80)
291 PF07757 AdoMet_MTase: Predict 94.1 0.045 9.7E-07 41.8 2.7 31 194-226 58-88 (112)
292 PF10672 Methyltrans_SAM: S-ad 93.9 0.12 2.6E-06 47.3 5.6 98 194-295 123-239 (286)
293 PF03141 Methyltransf_29: Puta 93.9 0.17 3.6E-06 49.3 6.7 130 193-359 364-506 (506)
294 COG3355 Predicted transcriptio 93.7 0.072 1.6E-06 42.1 3.4 47 39-88 31-77 (126)
295 PF08220 HTH_DeoR: DeoR-like h 93.7 0.079 1.7E-06 35.8 3.1 44 40-87 5-48 (57)
296 KOG2730 Methylase [General fun 93.7 0.035 7.5E-07 48.0 1.6 53 194-248 94-154 (263)
297 TIGR02337 HpaR homoprotocatech 93.7 0.19 4.1E-06 39.4 5.8 70 35-110 28-97 (118)
298 PF03514 GRAS: GRAS domain fam 93.7 0.77 1.7E-05 43.9 10.9 111 182-299 100-248 (374)
299 PRK11050 manganese transport r 93.6 0.37 8.1E-06 39.8 7.7 58 40-109 42-99 (152)
300 COG1959 Predicted transcriptio 93.6 0.1 2.2E-06 43.0 4.2 47 49-104 24-70 (150)
301 KOG2352 Predicted spermine/spe 93.5 0.29 6.3E-06 47.5 7.7 97 196-296 50-163 (482)
302 KOG4058 Uncharacterized conser 93.5 0.18 3.9E-06 40.9 5.2 98 193-299 71-177 (199)
303 PRK11014 transcriptional repre 93.4 0.19 4.1E-06 40.9 5.5 61 30-103 9-69 (141)
304 KOG2793 Putative N2,N2-dimethy 93.3 0.53 1.1E-05 42.0 8.5 97 194-296 86-201 (248)
305 TIGR00738 rrf2_super rrf2 fami 93.3 0.12 2.5E-06 41.5 4.0 47 49-104 24-70 (132)
306 COG1321 TroR Mn-dependent tran 93.2 0.12 2.5E-06 42.8 3.9 53 48-111 22-74 (154)
307 KOG2187 tRNA uracil-5-methyltr 93.1 0.12 2.6E-06 50.3 4.4 55 192-248 381-442 (534)
308 smart00347 HTH_MARR helix_turn 93.1 0.1 2.2E-06 39.2 3.3 67 37-109 12-78 (101)
309 COG4742 Predicted transcriptio 93.0 0.1 2.2E-06 46.7 3.6 65 32-110 10-74 (260)
310 cd07377 WHTH_GntR Winged helix 93.0 0.34 7.5E-06 33.2 5.6 34 51-87 26-59 (66)
311 PRK11920 rirA iron-responsive 92.9 0.15 3.3E-06 42.1 4.3 47 49-104 23-69 (153)
312 COG0275 Predicted S-adenosylme 92.9 0.24 5.1E-06 45.2 5.7 65 182-248 13-84 (314)
313 PF12802 MarR_2: MarR family; 92.8 0.058 1.3E-06 36.9 1.4 47 38-87 8-55 (62)
314 PRK06266 transcription initiat 92.7 0.18 3.8E-06 42.8 4.4 46 38-87 25-70 (178)
315 PF01726 LexA_DNA_bind: LexA D 92.7 0.093 2E-06 36.6 2.3 39 47-87 22-60 (65)
316 TIGR02702 SufR_cyano iron-sulf 92.6 0.13 2.8E-06 44.7 3.6 67 39-110 5-72 (203)
317 PF01047 MarR: MarR family; I 92.5 0.05 1.1E-06 36.8 0.8 44 40-87 8-51 (59)
318 smart00345 HTH_GNTR helix_turn 92.5 0.26 5.7E-06 33.0 4.4 36 49-87 18-54 (60)
319 KOG0822 Protein kinase inhibit 92.5 0.66 1.4E-05 45.4 8.4 120 157-283 335-470 (649)
320 COG2345 Predicted transcriptio 92.4 0.12 2.5E-06 45.1 3.0 67 40-111 16-83 (218)
321 PRK10742 putative methyltransf 92.4 0.23 5E-06 44.2 5.0 74 182-259 76-171 (250)
322 TIGR00122 birA_repr_reg BirA b 92.3 0.16 3.5E-06 35.6 3.2 54 38-104 3-56 (69)
323 TIGR02944 suf_reg_Xantho FeS a 92.3 0.17 3.7E-06 40.5 3.7 46 49-103 24-69 (130)
324 COG0116 Predicted N6-adenine-s 92.3 0.95 2.1E-05 42.9 9.1 70 192-261 189-308 (381)
325 TIGR01884 cas_HTH CRISPR locus 92.2 0.16 3.4E-06 44.2 3.7 58 38-105 146-203 (203)
326 PF08279 HTH_11: HTH domain; 92.2 0.16 3.5E-06 33.8 2.9 39 40-81 5-43 (55)
327 PF01638 HxlR: HxlR-like helix 92.1 0.1 2.2E-06 38.9 2.0 62 41-109 11-73 (90)
328 COG2265 TrmA SAM-dependent met 91.8 0.16 3.6E-06 49.3 3.6 66 192-259 291-369 (432)
329 smart00420 HTH_DEOR helix_turn 91.7 0.21 4.6E-06 32.5 3.1 43 41-87 6-48 (53)
330 COG4190 Predicted transcriptio 91.6 0.19 4.2E-06 39.6 3.1 59 25-87 54-112 (144)
331 PF10354 DUF2431: Domain of un 91.6 2.7 5.8E-05 35.2 10.2 121 200-349 2-154 (166)
332 PF05958 tRNA_U5-meth_tr: tRNA 91.5 0.11 2.4E-06 49.2 2.1 49 196-246 198-253 (352)
333 PF06859 Bin3: Bicoid-interact 91.4 0.16 3.5E-06 39.1 2.5 83 253-349 2-94 (110)
334 KOG3924 Putative protein methy 91.4 0.47 1E-05 44.8 5.9 102 192-299 190-313 (419)
335 PRK03573 transcriptional regul 91.4 1.1 2.3E-05 36.5 7.6 66 40-110 36-101 (144)
336 TIGR00373 conserved hypothetic 91.3 0.18 3.9E-06 41.9 2.9 46 38-87 17-62 (158)
337 KOG1501 Arginine N-methyltrans 91.3 0.18 4E-06 48.0 3.2 88 194-282 66-165 (636)
338 KOG1562 Spermidine synthase [A 91.2 0.47 1E-05 43.1 5.6 98 192-294 119-236 (337)
339 COG0144 Sun tRNA and rRNA cyto 91.2 1.9 4.2E-05 40.9 10.1 106 192-300 154-294 (355)
340 PF03492 Methyltransf_7: SAM d 91.0 2.6 5.6E-05 39.6 10.6 149 192-343 14-249 (334)
341 cd00090 HTH_ARSR Arsenical Res 90.9 0.29 6.4E-06 34.3 3.4 55 39-103 11-65 (78)
342 PRK01747 mnmC bifunctional tRN 90.9 0.43 9.4E-06 49.3 5.9 96 194-292 57-204 (662)
343 smart00529 HTH_DTXR Helix-turn 90.8 0.38 8.3E-06 36.0 4.1 46 53-109 2-47 (96)
344 PF01325 Fe_dep_repress: Iron 90.4 0.37 7.9E-06 33.0 3.3 37 48-87 20-56 (60)
345 PF07381 DUF1495: Winged helix 90.2 0.35 7.6E-06 35.9 3.2 67 35-109 9-87 (90)
346 PRK06474 hypothetical protein; 89.3 0.49 1.1E-05 40.2 4.0 75 29-106 5-80 (178)
347 PF00325 Crp: Bacterial regula 89.2 0.4 8.6E-06 28.2 2.3 31 50-83 2-32 (32)
348 PF06163 DUF977: Bacterial pro 89.2 0.44 9.5E-06 37.4 3.2 50 34-87 11-60 (127)
349 PF06962 rRNA_methylase: Putat 89.2 0.96 2.1E-05 36.6 5.3 106 220-348 1-126 (140)
350 COG3432 Predicted transcriptio 89.0 0.21 4.5E-06 37.4 1.3 54 48-109 29-82 (95)
351 cd00315 Cyt_C5_DNA_methylase C 88.9 3.4 7.5E-05 37.6 9.5 122 197-345 2-141 (275)
352 TIGR01610 phage_O_Nterm phage 88.9 0.75 1.6E-05 34.6 4.3 44 49-102 46-89 (95)
353 TIGR01889 Staph_reg_Sar staphy 88.7 0.53 1.1E-05 36.4 3.5 56 49-109 42-97 (109)
354 smart00418 HTH_ARSR helix_turn 88.5 0.57 1.2E-05 31.6 3.2 36 49-87 9-44 (66)
355 PRK15431 ferrous iron transpor 88.3 0.57 1.2E-05 33.6 3.1 42 42-87 9-50 (78)
356 smart00344 HTH_ASNC helix_turn 88.3 0.39 8.5E-06 36.9 2.5 47 36-86 4-50 (108)
357 PF03444 HrcA_DNA-bdg: Winged 88.2 0.67 1.5E-05 33.3 3.4 49 48-106 21-70 (78)
358 cd08283 FDH_like_1 Glutathione 87.6 5.3 0.00011 38.2 10.4 99 192-295 182-307 (386)
359 COG5631 Predicted transcriptio 87.2 3 6.6E-05 34.2 6.9 86 13-106 55-147 (199)
360 PRK14165 winged helix-turn-hel 87.2 1.1 2.3E-05 39.3 4.8 67 31-109 6-72 (217)
361 PF01189 Nol1_Nop2_Fmu: NOL1/N 86.4 1.5 3.3E-05 40.2 5.6 103 192-297 83-222 (283)
362 PRK10870 transcriptional repre 86.2 1.2 2.7E-05 37.6 4.6 68 38-110 58-126 (176)
363 PF13545 HTH_Crp_2: Crp-like h 86.0 1.2 2.6E-05 31.6 3.8 59 30-103 6-69 (76)
364 PF07789 DUF1627: Protein of u 85.9 1.3 2.8E-05 35.8 4.2 36 49-87 5-40 (155)
365 PF00392 GntR: Bacterial regul 85.8 1 2.3E-05 30.9 3.3 37 48-87 21-58 (64)
366 PF02002 TFIIE_alpha: TFIIE al 85.4 0.4 8.7E-06 36.8 1.1 44 40-87 18-61 (105)
367 PLN02853 Probable phenylalanyl 85.4 0.74 1.6E-05 45.1 3.1 69 35-113 3-73 (492)
368 PF11899 DUF3419: Protein of u 85.2 1.3 2.7E-05 42.4 4.6 61 236-299 274-339 (380)
369 COG4189 Predicted transcriptio 85.2 1.1 2.4E-05 39.1 3.7 55 28-86 16-70 (308)
370 cd07153 Fur_like Ferric uptake 85.1 0.86 1.9E-05 35.4 2.9 51 37-87 3-55 (116)
371 KOG1099 SAM-dependent methyltr 85.1 3.2 6.9E-05 36.4 6.4 94 192-292 39-161 (294)
372 PRK04172 pheS phenylalanyl-tRN 85.0 0.82 1.8E-05 45.4 3.4 67 37-113 8-75 (489)
373 PF14394 DUF4423: Domain of un 84.9 1.3 2.9E-05 37.3 4.1 63 25-106 22-86 (171)
374 COG1255 Uncharacterized protei 84.8 16 0.00035 28.5 9.4 87 194-296 13-104 (129)
375 PF07109 Mg-por_mtran_C: Magne 84.6 2.2 4.9E-05 32.1 4.7 82 260-358 3-96 (97)
376 PRK04214 rbn ribonuclease BN/u 84.5 1.3 2.9E-05 42.9 4.5 44 48-102 308-351 (412)
377 COG3413 Predicted DNA binding 84.0 1.6 3.6E-05 38.1 4.5 42 28-76 160-201 (215)
378 COG1568 Predicted methyltransf 83.7 1.7 3.7E-05 39.2 4.3 200 52-283 36-249 (354)
379 PF12324 HTH_15: Helix-turn-he 83.6 0.74 1.6E-05 32.9 1.7 35 40-78 29-63 (77)
380 PF05430 Methyltransf_30: S-ad 83.5 7.5 0.00016 30.8 7.6 53 272-359 71-123 (124)
381 PF12793 SgrR_N: Sugar transpo 83.4 1.6 3.5E-05 34.2 3.7 36 49-87 18-53 (115)
382 PF03686 UPF0146: Uncharacteri 83.4 5.3 0.00011 31.7 6.5 87 194-296 13-104 (127)
383 PTZ00326 phenylalanyl-tRNA syn 83.3 1.2 2.5E-05 43.9 3.5 69 36-113 7-76 (494)
384 PHA02943 hypothetical protein; 83.3 1.2 2.6E-05 36.2 2.9 44 39-87 15-58 (165)
385 COG1565 Uncharacterized conser 81.9 2.3 5E-05 40.0 4.7 60 162-226 50-117 (370)
386 PF04182 B-block_TFIIIC: B-blo 81.9 1 2.2E-05 32.2 1.9 48 37-87 4-52 (75)
387 PF02153 PDH: Prephenate dehyd 81.9 1.7 3.7E-05 39.2 3.8 70 208-283 1-71 (258)
388 COG1846 MarR Transcriptional r 81.5 1.8 3.8E-05 33.6 3.4 71 34-110 21-91 (126)
389 COG1510 Predicted transcriptio 81.2 1.4 3E-05 36.7 2.7 38 47-87 38-75 (177)
390 PF04445 SAM_MT: Putative SAM- 81.0 1.5 3.4E-05 38.7 3.1 77 182-262 63-161 (234)
391 PRK13777 transcriptional regul 80.7 2.2 4.7E-05 36.5 3.8 67 38-110 48-114 (185)
392 COG1063 Tdh Threonine dehydrog 80.6 6.4 0.00014 37.2 7.4 94 195-299 169-274 (350)
393 PRK11169 leucine-responsive tr 80.3 1.7 3.6E-05 36.3 3.0 48 35-86 14-61 (164)
394 PF13730 HTH_36: Helix-turn-he 80.2 1.9 4.1E-05 28.5 2.7 29 52-83 27-55 (55)
395 PRK13509 transcriptional repre 80.1 1.8 4E-05 38.9 3.4 46 38-87 8-53 (251)
396 PF10007 DUF2250: Uncharacteri 80.0 1.6 3.6E-05 32.5 2.5 47 37-87 9-55 (92)
397 PRK11179 DNA-binding transcrip 79.9 1.6 3.5E-05 36.0 2.7 47 36-86 10-56 (153)
398 COG4565 CitB Response regulato 79.7 1.7 3.8E-05 37.6 2.9 35 49-86 172-206 (224)
399 COG1733 Predicted transcriptio 79.5 2.7 5.9E-05 33.1 3.8 80 14-109 11-91 (120)
400 PRK07502 cyclohexadienyl dehyd 79.5 8.7 0.00019 35.5 7.8 84 195-283 6-92 (307)
401 PRK10906 DNA-binding transcrip 78.9 1.6 3.5E-05 39.3 2.6 47 37-87 7-53 (252)
402 PF05206 TRM13: Methyltransfer 78.9 3.3 7.1E-05 37.4 4.6 35 192-226 16-55 (259)
403 KOG1596 Fibrillarin and relate 78.6 9.4 0.0002 33.9 7.0 103 192-301 154-268 (317)
404 COG2512 Predicted membrane-ass 78.6 1.4 2.9E-05 39.8 2.0 49 37-88 197-245 (258)
405 KOG2920 Predicted methyltransf 78.1 2.4 5.3E-05 38.4 3.4 37 193-230 115-152 (282)
406 COG1522 Lrp Transcriptional re 77.3 2.1 4.5E-05 35.1 2.7 48 36-87 9-56 (154)
407 TIGR00498 lexA SOS regulatory 76.7 3.2 6.9E-05 35.8 3.8 38 48-87 23-60 (199)
408 PF11599 AviRa: RRNA methyltra 76.5 5.6 0.00012 34.7 5.0 97 193-292 50-212 (246)
409 PRK09424 pntA NAD(P) transhydr 76.3 19 0.00042 35.9 9.5 95 193-295 163-286 (509)
410 KOG2651 rRNA adenine N-6-methy 76.1 4 8.7E-05 38.5 4.3 43 183-227 143-185 (476)
411 COG2933 Predicted SAM-dependen 75.9 8 0.00017 34.8 5.9 84 192-283 209-295 (358)
412 PF05711 TylF: Macrocin-O-meth 75.8 3.8 8.3E-05 36.7 4.1 99 194-296 74-214 (248)
413 PRK11886 bifunctional biotin-- 75.7 3 6.4E-05 38.9 3.5 56 38-104 7-62 (319)
414 COG0287 TyrA Prephenate dehydr 75.4 13 0.00028 34.0 7.5 82 196-283 4-90 (279)
415 PF05584 Sulfolobus_pRN: Sulfo 75.1 3.5 7.6E-05 29.1 2.8 42 40-86 10-51 (72)
416 PF03721 UDPG_MGDP_dh_N: UDP-g 75.0 4.9 0.00011 34.3 4.4 99 197-300 2-125 (185)
417 PRK05562 precorrin-2 dehydroge 74.8 21 0.00046 31.4 8.4 66 194-260 24-93 (223)
418 PF05732 RepL: Firmicute plasm 74.8 4.2 9.1E-05 34.0 3.8 69 19-104 49-118 (165)
419 PRK09802 DNA-binding transcrip 74.7 2.8 6E-05 38.1 3.0 47 37-87 19-65 (269)
420 COG1497 Predicted transcriptio 74.2 2.3 5E-05 37.4 2.2 80 49-140 24-106 (260)
421 PF02636 Methyltransf_28: Puta 74.2 3.7 8.1E-05 36.8 3.7 32 195-226 19-58 (252)
422 PRK05638 threonine synthase; V 74.1 3.5 7.7E-05 40.4 3.7 60 40-108 376-437 (442)
423 COG3510 CmcI Cephalosporin hyd 74.0 16 0.00036 31.2 7.0 104 194-302 69-188 (237)
424 TIGR02147 Fsuc_second hypothet 73.9 4.4 9.6E-05 36.8 4.0 46 49-105 136-183 (271)
425 PRK11534 DNA-binding transcrip 73.3 5.7 0.00012 34.8 4.6 37 48-87 28-64 (224)
426 PF01210 NAD_Gly3P_dh_N: NAD-d 73.1 3.7 8.1E-05 33.9 3.1 87 197-293 1-101 (157)
427 PRK10411 DNA-binding transcrip 73.0 4.2 9E-05 36.3 3.6 45 39-87 8-52 (240)
428 COG1802 GntR Transcriptional r 72.8 5.6 0.00012 35.1 4.4 50 31-87 24-73 (230)
429 KOG0024 Sorbitol dehydrogenase 72.8 26 0.00057 32.6 8.6 98 192-300 167-279 (354)
430 PRK06719 precorrin-2 dehydroge 72.6 30 0.00065 28.6 8.5 77 194-278 12-91 (157)
431 PF02254 TrkA_N: TrkA-N domain 72.5 3.9 8.4E-05 31.5 3.0 81 203-292 4-94 (116)
432 TIGR03338 phnR_burk phosphonat 72.4 5.2 0.00011 34.6 4.1 37 48-87 32-68 (212)
433 PF13460 NAD_binding_10: NADH( 72.2 55 0.0012 27.1 11.1 132 201-348 3-144 (183)
434 PF06969 HemN_C: HemN C-termin 71.9 4.8 0.0001 27.7 3.0 47 49-106 19-65 (66)
435 TIGR01470 cysG_Nterm siroheme 71.8 10 0.00023 32.8 5.8 64 194-259 8-76 (205)
436 PRK10434 srlR DNA-bindng trans 71.6 3.1 6.7E-05 37.5 2.5 47 37-87 7-53 (256)
437 PF08784 RPA_C: Replication pr 71.5 3.1 6.8E-05 31.6 2.2 35 49-86 64-98 (102)
438 PF08221 HTH_9: RNA polymerase 71.4 2.8 6E-05 28.8 1.7 43 41-87 19-61 (62)
439 KOG1269 SAM-dependent methyltr 71.3 13 0.00029 35.3 6.8 258 19-303 21-322 (364)
440 PHA01634 hypothetical protein 71.3 8.5 0.00018 30.6 4.5 39 194-233 28-67 (156)
441 COG0286 HsdM Type I restrictio 70.4 29 0.00062 34.5 9.2 68 193-260 185-272 (489)
442 PF14740 DUF4471: Domain of un 70.3 9 0.00019 35.1 5.1 78 236-344 199-286 (289)
443 COG1378 Predicted transcriptio 70.2 5.5 0.00012 35.7 3.8 61 39-109 20-80 (247)
444 PF11994 DUF3489: Protein of u 70.1 9.6 0.00021 27.0 4.1 43 40-86 15-59 (72)
445 cd08237 ribitol-5-phosphate_DH 70.0 36 0.00077 31.8 9.5 93 193-295 162-257 (341)
446 PF02319 E2F_TDP: E2F/DP famil 69.9 2.9 6.2E-05 29.6 1.5 38 49-87 23-63 (71)
447 cd01842 SGNH_hydrolase_like_5 69.8 10 0.00022 32.0 4.9 43 253-299 51-103 (183)
448 KOG2539 Mitochondrial/chloropl 69.7 11 0.00024 36.6 5.8 100 195-297 201-318 (491)
449 COG1349 GlpR Transcriptional r 69.4 4.2 9E-05 36.6 2.8 46 38-87 8-53 (253)
450 PLN02353 probable UDP-glucose 69.4 32 0.0007 34.0 9.2 100 196-300 2-132 (473)
451 smart00531 TFIIE Transcription 68.8 4.6 9.9E-05 33.1 2.7 41 39-83 5-45 (147)
452 COG1675 TFA1 Transcription ini 68.7 4.7 0.0001 34.0 2.8 46 38-87 21-66 (176)
453 PF13518 HTH_28: Helix-turn-he 68.6 4.1 8.8E-05 26.3 2.0 29 51-82 13-41 (52)
454 PRK08507 prephenate dehydrogen 68.4 17 0.00036 33.0 6.6 79 197-283 2-83 (275)
455 PRK12423 LexA repressor; Provi 68.2 5.8 0.00013 34.3 3.4 37 49-87 24-60 (202)
456 PF09821 AAA_assoc_C: C-termin 68.1 6.9 0.00015 30.9 3.5 73 55-140 2-74 (120)
457 PF12692 Methyltransf_17: S-ad 68.0 17 0.00038 29.7 5.7 54 195-248 29-82 (160)
458 PRK11753 DNA-binding transcrip 67.1 8 0.00017 33.2 4.1 35 50-87 168-202 (211)
459 TIGR00675 dcm DNA-methyltransf 66.9 26 0.00057 32.6 7.7 118 198-344 1-137 (315)
460 PF09929 DUF2161: Uncharacteri 66.8 6.2 0.00014 30.7 2.9 50 42-106 66-115 (118)
461 PF00165 HTH_AraC: Bacterial r 66.6 5.9 0.00013 24.5 2.3 28 49-79 7-34 (42)
462 TIGR01202 bchC 2-desacetyl-2-h 66.6 62 0.0013 29.7 10.2 87 194-296 144-233 (308)
463 TIGR02787 codY_Gpos GTP-sensin 66.5 6.4 0.00014 34.8 3.3 46 39-87 187-232 (251)
464 COG2186 FadR Transcriptional r 66.3 8.8 0.00019 34.2 4.3 58 32-102 19-76 (241)
465 TIGR03697 NtcA_cyano global ni 65.9 8.6 0.00019 32.4 4.0 36 49-87 142-177 (193)
466 PF13404 HTH_AsnC-type: AsnC-t 65.8 4.2 9.1E-05 25.5 1.5 33 36-72 4-36 (42)
467 PRK10736 hypothetical protein; 65.5 8.1 0.00018 36.8 4.0 45 38-87 311-355 (374)
468 PF13814 Replic_Relax: Replica 65.5 8.7 0.00019 32.6 4.0 66 43-109 3-70 (191)
469 PRK13239 alkylmercury lyase; P 65.2 4.5 9.7E-05 35.0 2.1 37 38-78 25-61 (206)
470 PRK11414 colanic acid/biofilm 65.0 11 0.00024 32.9 4.6 37 48-87 32-68 (221)
471 PF09681 Phage_rep_org_N: N-te 64.6 12 0.00025 29.6 4.1 48 49-107 52-99 (121)
472 PRK13699 putative methylase; P 64.1 32 0.0007 30.3 7.4 76 239-346 2-95 (227)
473 PTZ00357 methyltransferase; Pr 63.6 41 0.0009 34.7 8.5 127 155-282 640-822 (1072)
474 TIGR00635 ruvB Holliday juncti 62.9 5.9 0.00013 36.5 2.6 37 48-87 253-290 (305)
475 PRK09990 DNA-binding transcrip 62.8 12 0.00025 33.5 4.4 37 48-87 28-65 (251)
476 PF03428 RP-C: Replication pro 62.5 10 0.00022 32.2 3.6 35 51-88 71-106 (177)
477 PRK11161 fumarate/nitrate redu 62.4 11 0.00023 33.1 4.1 36 49-87 183-218 (235)
478 PF00107 ADH_zinc_N: Zinc-bind 61.9 18 0.0004 28.1 5.0 82 204-297 1-92 (130)
479 TIGR03879 near_KaiC_dom probab 61.7 6.7 0.00014 27.9 2.0 34 49-85 31-64 (73)
480 PF13384 HTH_23: Homeodomain-l 61.4 5.6 0.00012 25.5 1.5 40 37-82 7-46 (50)
481 PRK09464 pdhR transcriptional 61.3 13 0.00028 33.2 4.5 45 48-102 31-76 (254)
482 cd08230 glucose_DH Glucose deh 61.1 71 0.0015 29.9 9.7 92 193-297 171-272 (355)
483 PRK00215 LexA repressor; Valid 60.9 12 0.00025 32.4 3.9 37 48-87 21-58 (205)
484 TIGR01321 TrpR trp operon repr 60.9 6.3 0.00014 29.5 1.9 41 33-78 40-80 (94)
485 CHL00194 ycf39 Ycf39; Provisio 60.5 1.3E+02 0.0029 27.6 11.2 61 197-259 2-71 (317)
486 PRK09391 fixK transcriptional 60.5 27 0.00057 30.7 6.2 36 49-87 178-213 (230)
487 COG0541 Ffh Signal recognition 60.4 25 0.00054 34.1 6.2 104 194-300 99-227 (451)
488 PRK04424 fatty acid biosynthes 60.4 3.7 8.1E-05 35.0 0.7 46 38-87 10-55 (185)
489 PRK10225 DNA-binding transcrip 60.4 14 0.00029 33.2 4.4 37 48-87 30-67 (257)
490 COG0686 Ald Alanine dehydrogen 60.2 28 0.00061 32.3 6.2 91 195-291 168-265 (371)
491 cd05188 MDR Medium chain reduc 60.1 1.2E+02 0.0026 26.5 11.2 93 193-297 133-235 (271)
492 COG1725 Predicted transcriptio 60.0 14 0.0003 29.3 3.7 45 49-103 34-78 (125)
493 PRK11642 exoribonuclease R; Pr 59.8 9.9 0.00021 40.3 3.8 48 40-87 24-72 (813)
494 PRK07417 arogenate dehydrogena 59.4 44 0.00096 30.3 7.7 79 197-283 2-83 (279)
495 COG2188 PhnF Transcriptional r 59.2 13 0.00029 32.9 4.1 60 31-103 15-74 (236)
496 PRK11064 wecC UDP-N-acetyl-D-m 59.1 97 0.0021 30.1 10.3 99 196-299 4-123 (415)
497 PRK04984 fatty acid metabolism 59.0 16 0.00034 32.3 4.5 58 31-102 15-73 (239)
498 PRK13918 CRP/FNR family transc 58.7 13 0.00029 31.6 3.9 36 49-87 148-183 (202)
499 COG1654 BirA Biotin operon rep 57.8 17 0.00037 26.3 3.7 53 40-104 11-63 (79)
500 PRK09334 30S ribosomal protein 57.8 11 0.00024 27.7 2.6 36 49-87 40-75 (86)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=2.9e-42 Score=310.92 Aligned_cols=332 Identities=31% Similarity=0.467 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcC--CCCCCcchHHHHHHHHhccCceeeccccC
Q 043623 13 FQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE--FQPNKRNCLRRIMRLLDHSGFFSTTKVHN 90 (359)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 90 (359)
.+...+++++++++...+++++|+|||+||+|.++ ++ ..|+|..+. ..|.++..++|+||.|+++++++..-.
T Consensus 4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~-- 78 (342)
T KOG3178|consen 4 NEASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV-- 78 (342)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee--
Confidence 44567899999999999999999999999999974 22 888888877 344578899999999999999998852
Q ss_pred CCCCCCceEecCccchhhhcC-CCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHH
Q 043623 91 SREEENEAYALTSASKLLLKD-KPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNL 169 (359)
Q Consensus 91 ~~~~~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (359)
++. .|+++|.++++.++ .-.++++++.........+.|..+.++++ .++ .++...+|...++|...+......
T Consensus 79 ---~~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~-eg~-~~~~~~~G~~l~~~~~~~~~~~~~ 152 (342)
T KOG3178|consen 79 ---GGE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAIL-EGG-DAFATAHGMMLGGYGGADERFSKD 152 (342)
T ss_pred ---cce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHH-hcc-cCCccccchhhhhhcccccccHHH
Confidence 112 79999999865533 33588888888878888999999999999 777 678888998889998888888889
Q ss_pred HHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCC-CCceEEeCCCC
Q 043623 170 FNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPET-DNLKFIAGDMN 247 (359)
Q Consensus 170 f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~-~rv~~~~~d~~ 247 (359)
|++.|....... +.+++.+. +++.....||||+|.|..+..++..||+++++.+|+|.+++.+... +.|+.+.+|++
T Consensus 153 ~~~sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmf 231 (342)
T KOG3178|consen 153 FNGSMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMF 231 (342)
T ss_pred HHHHHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccc
Confidence 999998888777 77777766 4778899999999999999999999999999999999999998875 88999999999
Q ss_pred CCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchH-HHHHHHhhhhhhhhc-CCcc
Q 043623 248 QSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEI-TEAKLLYDALMMTCV-PGIE 325 (359)
Q Consensus 248 ~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~ 325 (359)
++.|..|+||+.++||||+|++++++|+|+++.|+| ||+|+|.|.+.++....... ......+|+.|+..+ +|++
T Consensus 232 q~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gke 308 (342)
T KOG3178|consen 232 QDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKE 308 (342)
T ss_pred ccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcccee
Confidence 999999999999999999999999999999999999 99999999988863222111 122345788888775 6999
Q ss_pred cCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 326 RSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 326 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
|+.+|++.++.++||.+.++...+..+++|+++|
T Consensus 309 rt~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 309 RTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred ccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 9999999999999999999999999999999986
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=2.8e-38 Score=293.32 Aligned_cols=286 Identities=21% Similarity=0.314 Sum_probs=211.3
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchh
Q 043623 28 SSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKL 107 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~ 107 (359)
..++|++|++|||||.|.+ +|.|++|||+++|+ +++.+++||++|+++|+|++++ +.|++|+.++.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~~---------~~y~~t~~~~~ 68 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED---------GKWSLTEFADY 68 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEecC---------CcEecchhHHh
Confidence 4689999999999999986 89999999999999 6799999999999999999874 78999999884
Q ss_pred hh-cCCCC---ChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhhcCccch-H
Q 043623 108 LL-KDKPY---CLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMA-K 182 (359)
Q Consensus 108 l~-~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~ 182 (359)
+. .+++. ++.++..+... .....|..|.++++ ++. +|...++ +....++....+...+....... +
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~r-~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (306)
T TIGR02716 69 MFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQAVR-GQK--NFKGQVP-----YPPVTREDNLYFEEIHRSNAKFAIQ 139 (306)
T ss_pred hccCCccchhhhcCchHHHHHH-HHHHHHHhHHHHhc-CCc--ccccccC-----CCCCCHHHHHhHHHHHHhcchhHHH
Confidence 44 44432 11233333211 12356889999998 432 2332221 11112222223333333333334 5
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCCCcc
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIPSAD 254 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D 254 (359)
.+++..+ +++..+|||||||+|.+++.+++++|+++++++|+|.+++.+++ .+||+++.+|+++ ++|++|
T Consensus 140 ~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D 217 (306)
T TIGR02716 140 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD 217 (306)
T ss_pred HHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCC
Confidence 6667666 77889999999999999999999999999999999888876643 5789999999997 777899
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh----hhhhhcCCcccCHHH
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA----LMMTCVPGIERSEKE 330 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~t~~e 330 (359)
+|++++++|+|+++.+.++|++++++|+| ||+++|.|...++..... + ....+. .+.... ...++.++
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~---~~~~~~~~~~~~~~~~-~~~~~~~e 289 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-F---DYLSHYILGAGMPFSV-LGFKEQAR 289 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCch-h---hHHHHHHHHccccccc-ccCCCHHH
Confidence 99999999999999889999999999999 999999999877654221 1 111211 111111 12345899
Q ss_pred HHHHHHhcCCceeeEE
Q 043623 331 WERLFFDAGFTSYKIT 346 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~ 346 (359)
|.++|+++||+.++++
T Consensus 290 ~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 290 YKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHcCCCeeEec
Confidence 9999999999988764
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=1.2e-38 Score=286.05 Aligned_cols=234 Identities=31% Similarity=0.648 Sum_probs=200.2
Q ss_pred CceEecCccchhhhcCCC-CChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHh
Q 043623 96 NEAYALTSASKLLLKDKP-YCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGL 174 (359)
Q Consensus 96 ~~~~~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~ 174 (359)
++.|++|+.|+.|..+++ .++..++.++..+.++..|.+|.++++ +|+ ++++..+|.++|+|+.++++....|+.+|
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~-~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 80 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVR-TGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAM 80 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHH-HSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhc-cCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHH
Confidence 579999999997775554 578888877656678899999999999 787 78888889899999999999999999999
Q ss_pred hcCccch--HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCCCCC
Q 043623 175 ASDSQMA--KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSIPS 252 (359)
Q Consensus 175 ~~~~~~~--~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~~~~ 252 (359)
...+... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 81 AEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS
T ss_pred Hhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcc
Confidence 9876655 45566677 7888999999999999999999999999999999999999988899999999999998888
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCC--ceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGR--EKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE 330 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e 330 (359)
+|+|+++++||+|+|+++.+||++++++|+| | |+|+|+|.+.++....+........+|++|+..++|+.||.+|
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e 235 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEE 235 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHH
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999999999999999999999999 8 9999999999998877533222357999999999999999999
Q ss_pred HHHHHH
Q 043623 331 WERLFF 336 (359)
Q Consensus 331 ~~~ll~ 336 (359)
|++||+
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999985
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.82 E-value=5.4e-19 Score=155.14 Aligned_cols=168 Identities=17% Similarity=0.280 Sum_probs=128.5
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCC-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPS- 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~- 252 (359)
+.++.... ..++.+|||||||||.++..+++..+..+++++|+ +.|++.+++ ...|+|+.+|+++ |+|+
T Consensus 41 ~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 44555444 34789999999999999999999999999999999 889988875 2239999999999 9985
Q ss_pred -ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh-hhhhcC--------
Q 043623 253 -ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL-MMTCVP-------- 322 (359)
Q Consensus 253 -~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------- 322 (359)
||+|.+++.|++.+|.+ ++|++++|+||| ||+++++|...+........ ...+.+. .+...|
T Consensus 119 sFD~vt~~fglrnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~~~---~~~~~~~~v~P~~g~~~~~~~~ 190 (238)
T COG2226 119 SFDAVTISFGLRNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNPVLRKA---YILYYFKYVLPLIGKLVAKDAE 190 (238)
T ss_pred ccCEEEeeehhhcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCchhhHHH---HHHHHHHhHhhhhceeeecChH
Confidence 99999999999999865 779999999999 99999999998876543211 1111111 111111
Q ss_pred ---------CcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623 323 ---------GIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL 359 (359)
Q Consensus 323 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 359 (359)
-+..+.+++.++++++||+.+....+. |...+..++|
T Consensus 191 ~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 191 AYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 134589999999999999988866664 4445555543
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.79 E-value=1e-19 Score=161.29 Aligned_cols=157 Identities=19% Similarity=0.339 Sum_probs=82.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCC--ccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPS--ADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~--~D~i~~~~ 260 (359)
..++.+|||+|||||.++..++++. |+.+++++|+ +.|++.+++ ..+|+++.+|+.+ |+++ ||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5667899999999999999999875 6789999999 889988764 3589999999999 8774 99999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh---hhcC----C----------
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM---TCVP----G---------- 323 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----g---------- 323 (359)
.||+++|.. +.|++++|+||| ||+++|+|...++.... ...+.+++. ...| +
T Consensus 125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~~~~------~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~ 193 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRNPLL------RALYKFYFKYILPLIGRLLSGDREAYRYLPE 193 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SSHHH------HHHHHH-------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCCchh------hceeeeeeccccccccccccccccccccccc
Confidence 999999864 679999999999 99999999988775311 111211111 0001 1
Q ss_pred ---cccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623 324 ---IERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL 359 (359)
Q Consensus 324 ---~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 359 (359)
...+.+++.++++++||+.++..++. |...++.++|
T Consensus 194 Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 194 SIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccCC
Confidence 23478999999999999999988874 5566766655
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.78 E-value=1.7e-17 Score=150.15 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=120.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-CCC--CccEEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-SIP--SADAFL 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~~~--~~D~i~ 257 (359)
..++.+|||||||+|.++..+++.. |+.+++++|+ ++|++.+++ .++++++.+|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999999875 6789999999 788887643 3479999999988 776 399999
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh---hhhcC------------
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM---MTCVP------------ 322 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------ 322 (359)
++.++|++++. .++|++++++||| ||++++.|...++.....+. ...++...+ ....+
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999999875 4789999999999 99999999986654221110 001111000 00001
Q ss_pred CcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEE
Q 043623 323 GIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVY 358 (359)
Q Consensus 323 g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 358 (359)
...++.+++.++++++||+.++..... +...++.++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 235699999999999999999988875 455666654
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.77 E-value=1.8e-18 Score=154.95 Aligned_cols=158 Identities=12% Similarity=0.100 Sum_probs=120.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecch
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKLI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~v 261 (359)
.+..+|||||||+|.++..+++.+ |+++++++|+ +++++.+++ ..+++++.+|+.+ +.+.+|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 466799999999999999999874 7899999999 888877753 3578999999998 7778999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh-----------------h-cCC
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT-----------------C-VPG 323 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~g 323 (359)
+|++++++..++|++++++|+| ||.+++.|.+..+.....+ ....++... . .--
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 9999988888999999999999 9999999987655433211 111111100 0 012
Q ss_pred cccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623 324 IERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358 (359)
Q Consensus 324 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 358 (359)
...+.+++.++++++||+.+++.........+.++
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 35699999999999999988765554444444443
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.76 E-value=2.9e-17 Score=148.88 Aligned_cols=155 Identities=14% Similarity=0.219 Sum_probs=120.2
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~ 253 (359)
..++..+. +.++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ .+++.++.+|+.+ +++ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 45666666 7788999999999999999998765 679999999 777776653 4689999999987 665 49
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|+|++..+++|++.++..++|++++++||| ||++++.+.......... . .... ..........+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKA--YIKKRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHH--HHHhcCCCCCCHHHHHH
Confidence 999999999888866678999999999999 999999998765432211 1 0111 01111234468999999
Q ss_pred HHHhcCCceeeEEecC
Q 043623 334 LFFDAGFTSYKITPLL 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+|+++||++++...+.
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999988764
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.75 E-value=4.9e-17 Score=144.91 Aligned_cols=168 Identities=15% Similarity=0.232 Sum_probs=124.9
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~- 251 (359)
..++..++ ..++.+|||+|||+|.++..+++.. |+.+++++|+ +++++.+++ .++++++.+|+.+ +++
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 34555555 6677899999999999999999885 6789999999 778766553 4579999999987 555
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHH-Hhhhhh------------
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKL-LYDALM------------ 317 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~~~~~------------ 317 (359)
.||+|++..++|+.++. .++|+++.+.|+| ||++++.+...+.... ...... ++...+
T Consensus 113 ~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~ 184 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYK 184 (231)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHH
Confidence 49999999999998875 4789999999999 9999998876543311 100000 000000
Q ss_pred ----hhhcCCcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623 318 ----MTCVPGIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL 359 (359)
Q Consensus 318 ----~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 359 (359)
+.......++.+++.++|+++||+++++.... |..++++++|
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 185 EYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00011234588999999999999999999886 7788888887
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=7.6e-18 Score=151.50 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=115.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEA--FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~ 260 (359)
..+..+|||||||+|..+..+++. +|+.+++++|. +++++.+++ ..+++++.+|+.+ +.+.+|+|+++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 356789999999999999999884 68999999999 889888764 3489999999988 777799999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh------------hh-hhcC-Cccc
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL------------MM-TCVP-GIER 326 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~-g~~~ 326 (359)
++|++++++...++++++++|+| ||.+++.|.+..+.....+. ......... +. ...+ -...
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~ 209 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 209 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence 99999987778999999999999 99999999776554433211 000011100 00 0001 1234
Q ss_pred CHHHHHHHHHhcCCceeeEEe
Q 043623 327 SEKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 327 t~~e~~~ll~~aGf~~~~~~~ 347 (359)
+.++..++|+++||+.++++-
T Consensus 210 ~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 210 SVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred CHHHHHHHHHHcCchhHHHHH
Confidence 899999999999999877654
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=3e-16 Score=141.98 Aligned_cols=152 Identities=16% Similarity=0.248 Sum_probs=111.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-C-CCCccEEEe
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-S-IPSADAFLF 258 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~-~~~~D~i~~ 258 (359)
..+++.+. ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+ + .+.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 55666665 56779999999999999999999999999999999 889888875 468999999876 2 235999999
Q ss_pred cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH-----hhhhhh---hhcCCcccCHHH
Q 043623 259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL-----YDALMM---TCVPGIERSEKE 330 (359)
Q Consensus 259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~g~~~t~~e 330 (359)
+.++|++++. .+++++++++|+| ||++++..+.... ... ....... +...+. ...+....+.++
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~--~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 167 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAP---GSWIAVQVPGNFD--APS-HAAVRALARREPWAKLLRDIPFRVGAVVQTPAG 167 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEcCCCcC--Chh-HHHHHHHhccCchhHHhcccccccCcCCCCHHH
Confidence 9999999875 4789999999999 9999886432111 110 0000000 000000 011234568999
Q ss_pred HHHHHHhcCCceee
Q 043623 331 WERLFFDAGFTSYK 344 (359)
Q Consensus 331 ~~~ll~~aGf~~~~ 344 (359)
+.++|+++||++..
T Consensus 168 ~~~~l~~aGf~v~~ 181 (255)
T PRK14103 168 YAELLTDAGCKVDA 181 (255)
T ss_pred HHHHHHhCCCeEEE
Confidence 99999999998543
No 12
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.71 E-value=2.6e-16 Score=135.76 Aligned_cols=144 Identities=19% Similarity=0.276 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-CCCC--c
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPS------IKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-SIPS--A 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~~~~--~ 253 (359)
....++|||+||||..+..+++.-+. .+++++|+ |++++.+++ ..++.|+++|.++ |+|+ |
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 45689999999999999999998776 78999999 888876543 4569999999999 9885 9
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC-----------
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP----------- 322 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 322 (359)
|+|.+.+-+.++++.+ +.|++++|+||| ||++.+.|+...++.... .....+.+..+...|
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~---~fy~~ysf~VlpvlG~~iagd~~sYq 250 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEPLK---WFYDQYSFDVLPVLGEIIAGDRKSYQ 250 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHHHH---HHHHhhhhhhhchhhHhhhhhHhhhh
Confidence 9999999999999964 779999999999 999999998765532211 111111111111111
Q ss_pred ------CcccCHHHHHHHHHhcCCceee
Q 043623 323 ------GIERSEKEWERLFFDAGFTSYK 344 (359)
Q Consensus 323 ------g~~~t~~e~~~ll~~aGf~~~~ 344 (359)
-+..+.+++..+.++|||+.+.
T Consensus 251 YLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 251 YLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 2345899999999999999886
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.71 E-value=4.7e-16 Score=146.09 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=111.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v 261 (359)
.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++|+++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 679999999 777766543 4689999999988 665 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCc-hH-HHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKP-EI-TEAKLLYDALMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
+||++|. .+++++++++||| ||+++|.+.......... .. ......++............+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 9999875 4789999999999 999999887643322110 00 011111111111111112348999999999999
Q ss_pred CceeeEEecC
Q 043623 340 FTSYKITPLL 349 (359)
Q Consensus 340 f~~~~~~~~~ 349 (359)
|..+++..+.
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999987764
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=4e-15 Score=133.03 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=122.1
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~- 251 (359)
.++..+. ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..++.++.+|+.+ +.+
T Consensus 42 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 4444444 34568999999999999999999987 789999999 666665543 3578999999987 443
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh-----hcC---
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT-----CVP--- 322 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--- 322 (359)
.||+|++.+++|++++. ..+|+++.+.|+| ||.+++++...+...... .....+...++. ..+
T Consensus 120 ~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcH
Confidence 49999999999998875 4779999999999 999999988765432110 100011000000 001
Q ss_pred ---------CcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623 323 ---------GIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL 359 (359)
Q Consensus 323 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 359 (359)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 124578999999999999999999874 6678888876
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.67 E-value=1.2e-15 Score=141.72 Aligned_cols=141 Identities=23% Similarity=0.320 Sum_probs=111.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--CccEEEecchhccC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDY 265 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~ 265 (359)
.+..+|||||||+|.++..+++..+..+++++|. +++++.+++ ..+++++.+|+.+ +++ .||+|+++.++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999888889999999 778777654 4678999999987 655 49999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeE
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI 345 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 345 (359)
++.+ ++|++++++|+| ||++++.+...++... .....+.++ ...+.+++.++|+++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~------~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWL------SRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchhH------HHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 9865 679999999999 9999988765433111 111112221 1248999999999999999999
Q ss_pred EecCC
Q 043623 346 TPLLG 350 (359)
Q Consensus 346 ~~~~~ 350 (359)
..+..
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 87643
No 16
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=4.2e-15 Score=131.47 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=122.1
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--C
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--S 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~ 252 (359)
..++..+. ..++.+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .
T Consensus 29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 34444444 446789999999999999999999987 79999999 667665543 4579999999987 544 4
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC----------
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP---------- 322 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 322 (359)
||+|+++.++|+.++. ..+++++++.|+| ||++++.+...+...... .....+...++...+
T Consensus 107 ~D~i~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAY 178 (223)
T ss_pred EEEEEEeeeeCCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhh
Confidence 9999999999998874 4789999999999 999999888654332110 000011111111000
Q ss_pred -------CcccCHHHHHHHHHhcCCceeeEEecCCc-ceEEEEEC
Q 043623 323 -------GIERSEKEWERLFFDAGFTSYKITPLLGL-RSFIEVYL 359 (359)
Q Consensus 323 -------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~i~~~~ 359 (359)
....+.++|.++|+++||+.+++.+..+. ..+++++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 179 TYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 12347899999999999999999998654 66777775
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=2.8e-15 Score=147.57 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=117.5
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--Cc
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SA 253 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~ 253 (359)
.+++.+. ..++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..+++|+.+|+.+ +++ .|
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 4566555 5667899999999999999998876 679999999 777776643 4579999999988 655 39
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|+|++..+++|+++.. ++|++++++|+| ||++++.+.......... ..... ....+...++.+++.+
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~-----~~~~g~~~~~~~~~~~ 400 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEY-----IKQRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHH-----HHhcCCCCCCHHHHHH
Confidence 9999999999998764 789999999999 999999998765433221 11111 1123456779999999
Q ss_pred HHHhcCCceeeEEecC
Q 043623 334 LFFDAGFTSYKITPLL 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+++++||+++++....
T Consensus 401 ~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 401 MLKDAGFDDVIAEDRT 416 (475)
T ss_pred HHHHCCCeeeeeecch
Confidence 9999999998776543
No 18
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.64 E-value=4.1e-15 Score=126.74 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=127.9
Q ss_pred cCCCC-eEEEEcCCchHHHHHHHHHCCCCeEEEeechH-HHhcCC----C--CCCc-eEEeCCCCCC---CC--------
Q 043623 192 FDGLS-SLVEVGGGTGSFARIISEAFPSIKCSVLELPH-VIADLP----E--TDNL-KFIAGDMNQS---IP-------- 251 (359)
Q Consensus 192 ~~~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~i~~a~----~--~~rv-~~~~~d~~~~---~~-------- 251 (359)
++... +|||||+|||..+..+++++|++...--|.+. ...... + .+++ .-+..|+.++ ++
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 44445 49999999999999999999999998888732 222211 1 2333 2355666652 22
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh-cCCcccCHHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC-VPGIERSEKE 330 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~t~~e 330 (359)
.||+|++.+++|..+.+.+..+++.+.++|+| ||.++++-++..+....+ +....||..+... .....|+.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 49999999999999999999999999999999 999999999988775543 3445678777655 3567789999
Q ss_pred HHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 331 WERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
+.++.+++||+..+++.+|.++.+++.+|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999998888888775
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.63 E-value=4.3e-15 Score=138.21 Aligned_cols=153 Identities=11% Similarity=0.127 Sum_probs=109.2
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCceEEeCCCCC-CCC-C
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP-------ETDNLKFIAGDMNQ-SIP-S 252 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~-------~~~rv~~~~~d~~~-~~~-~ 252 (359)
.+...++ ...+.+|||||||+|.++..+++..+. +++++|. +.++..++ ...+|+++.+|+.+ +.+ .
T Consensus 113 ~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~ 189 (322)
T PRK15068 113 RVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKA 189 (322)
T ss_pred HHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCC
Confidence 3344443 234689999999999999999998776 6999998 54443221 14589999999987 654 4
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~ 332 (359)
||+|++..++||..+. ..+|+++++.|+| ||.+++.....+........+. ..+.. +. .....++.+++.
T Consensus 190 FD~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~l~p~-~~y~~--~~--~~~~lps~~~l~ 259 (322)
T PRK15068 190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTVLVPG-DRYAK--MR--NVYFIPSVPALK 259 (322)
T ss_pred cCEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccccCch-hHHhc--Cc--cceeCCCHHHHH
Confidence 9999999999998875 4789999999999 9999887665554332210000 11111 00 011245899999
Q ss_pred HHHHhcCCceeeEEec
Q 043623 333 RLFFDAGFTSYKITPL 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
++|+++||+.+++...
T Consensus 260 ~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 260 NWLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHHcCCceEEEEeC
Confidence 9999999999998765
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.63 E-value=4.7e-15 Score=136.62 Aligned_cols=153 Identities=10% Similarity=0.120 Sum_probs=108.5
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC-------CCCCCceEEeCCCCC-CC-CC
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL-------PETDNLKFIAGDMNQ-SI-PS 252 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a-------~~~~rv~~~~~d~~~-~~-~~ 252 (359)
.++..+. ..++.+|||||||+|.++..++...+. +++++|. +.++..+ ....++.+..+++.+ +. ..
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3454443 345689999999999999999988765 7999998 5555432 124678888888876 43 35
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~ 332 (359)
||+|++..+|||+++. ..+|++++++|+| ||.+++.....+......-.+. .. +. .|. .....++.+++.
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~l~p~-~r-y~-k~~--nv~flpS~~~L~ 258 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGDLNTVLVPK-DR-YA-KMK--NVYFIPSVSALK 258 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCccccccCch-HH-HH-hcc--ccccCCCHHHHH
Confidence 9999999999999876 4679999999999 9999988776544322110000 00 10 000 001235899999
Q ss_pred HHHHhcCCceeeEEec
Q 043623 333 RLFFDAGFTSYKITPL 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
.+|+++||+.+++...
T Consensus 259 ~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 259 NWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHCCCeEEEEEec
Confidence 9999999999998765
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.63 E-value=6.3e-15 Score=127.97 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=107.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-C
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-S 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-~ 252 (359)
+.+++.++ ..++.+|||+|||+|.++..++++ +.+++++|+ +.+++.+++ ..+++++..|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 56666665 556689999999999999999986 568999999 778876653 3458889999887 444 4
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~ 332 (359)
||+|++..++|++++++...++++++++|+| ||.+++++....+....+ .. ....++.+|+.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~--------~~-------~~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT--------VG-------FPFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC--------CC-------CCCccCHHHHH
Confidence 9999999999999888888999999999999 999877665544321110 00 01224788999
Q ss_pred HHHHhcCCceeeE
Q 043623 333 RLFFDAGFTSYKI 345 (359)
Q Consensus 333 ~ll~~aGf~~~~~ 345 (359)
++++ ||+++..
T Consensus 158 ~~~~--~~~~~~~ 168 (197)
T PRK11207 158 RYYE--GWEMVKY 168 (197)
T ss_pred HHhC--CCeEEEe
Confidence 9997 8988776
No 22
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.63 E-value=3e-15 Score=132.80 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=107.4
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecchhccC
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDY 265 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~ 265 (359)
++|||||||+|.++..+++.+|+.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 667665543 5689999999976 555 49999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeE
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI 345 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 345 (359)
++. ..+|+++++.|+| ||++++.+.......... . . .......+..+|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~-~-~-----------~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE-H-E-----------ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc-c-c-----------ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 874 5789999999999 999999987543211110 0 0 00111358999999999999999998
Q ss_pred EecC
Q 043623 346 TPLL 349 (359)
Q Consensus 346 ~~~~ 349 (359)
..+.
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 8764
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.62 E-value=2.1e-15 Score=118.59 Aligned_cols=98 Identities=17% Similarity=0.331 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCC-CC-CC-CCccEEEecc-h
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDM-NQ-SI-PSADAFLFKL-I 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~-~~-~~-~~~D~i~~~~-v 261 (359)
++.+|||||||+|.++..+++.+|+.+++++|. |++++.+++ .+||+++.+|+ .. .. +.||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999999999999999999999 788776653 78999999999 33 33 3599999999 6
Q ss_pred hccCC-hhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 262 FHDYD-DEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 262 lh~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+|++. .++..++|+++++.|+| ||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 66554 35678899999999999 89888865
No 24
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=2.3e-15 Score=139.26 Aligned_cols=143 Identities=8% Similarity=0.092 Sum_probs=106.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~vl 262 (359)
++.+|||||||+|.++..+++ ++.+++++|. +++++.++. ..+|+++.+|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 4679999999 788877653 2479999999877 443 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh--hhc----CCcccCHHHHHHHHH
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM--TCV----PGIERSEKEWERLFF 336 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~g~~~t~~e~~~ll~ 336 (359)
||++|.. .+|+++++.||| ||.++|......... + .........+. ... ..+.++++++.++|+
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~----~-~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~ 278 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRA----Y-ASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQ 278 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHH----H-HHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHH
Confidence 9999864 789999999999 999998876432110 0 00000000011 011 134679999999999
Q ss_pred hcCCceeeEEec
Q 043623 337 DAGFTSYKITPL 348 (359)
Q Consensus 337 ~aGf~~~~~~~~ 348 (359)
++||+++++..+
T Consensus 279 ~aGf~i~~~~G~ 290 (322)
T PLN02396 279 RASVDVKEMAGF 290 (322)
T ss_pred HcCCeEEEEeee
Confidence 999999998655
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.61 E-value=1.2e-14 Score=132.82 Aligned_cols=146 Identities=18% Similarity=0.306 Sum_probs=112.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~ 260 (359)
+.++.+|||||||+|..+..+++. .++.+++++|. +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567889999999999988877776 46678999999 788887764 3689999999987 655 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
++|++++. .++|++++++|+| ||++++.+......... ....+..+.....+...+.++|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 99988775 4689999999999 99999998875442211 1112222332233455689999999999999
Q ss_pred ceeeEEec
Q 043623 341 TSYKITPL 348 (359)
Q Consensus 341 ~~~~~~~~ 348 (359)
..+++...
T Consensus 224 ~~v~i~~~ 231 (272)
T PRK11873 224 VDITIQPK 231 (272)
T ss_pred CceEEEec
Confidence 99877543
No 26
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.61 E-value=9.1e-15 Score=122.44 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=97.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCCCccEEEecchhccCCh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIPSADAFLFKLIFHDYDD 267 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~~~D~i~~~~vlh~~~d 267 (359)
..+..+|||||||+|.++..+.+... +++++|. +.+++. .++.....+... +...||+|+++++|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999977644 9999999 677766 233333332223 2235999999999999997
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh--cCCcccCHHHHHHHHHhcCCceee
Q 043623 268 EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC--VPGIERSEKEWERLFFDAGFTSYK 344 (359)
Q Consensus 268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~t~~e~~~ll~~aGf~~~~ 344 (359)
. .++|+++++.||| ||.+++.++...... ........+... .....++.++|.++++++||++++
T Consensus 94 ~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 P--EEFLKELSRLLKP---GGYLVISDPNRDDPS-------PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHCEEE---EEEEEEEEEBTTSHH-------HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred H--HHHHHHHHHhcCC---CCEEEEEEcCCcchh-------hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4 5889999999999 999999988764310 111111111111 334677999999999999999875
No 27
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=1.2e-14 Score=129.92 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=127.7
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~ 253 (359)
..+++++. +.++.+|||||||-|.+++..++++ +.+++++++ +++.+.+++ .++|++...|..+..+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 56777777 8999999999999999999999999 899999999 666555443 578999999998844459
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|-|++...++|+..+.-..+|+++++.|+| ||++++.....++..... . ..+ +.-...+||..++..++.+
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~-~---~~~--i~~yiFPgG~lPs~~~i~~ 209 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR-F---PDF--IDKYIFPGGELPSISEILE 209 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc-c---hHH--HHHhCCCCCcCCCHHHHHH
Confidence 999999999999998888999999999999 999999888777754311 0 001 1112247899999999999
Q ss_pred HHHhcCCceeeEEecC
Q 043623 334 LFFDAGFTSYKITPLL 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
..+++||.+.++..++
T Consensus 210 ~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 210 LASEAGFVVLDVESLR 225 (283)
T ss_pred HHHhcCcEEehHhhhc
Confidence 9999999998887664
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=2.4e-15 Score=125.17 Aligned_cols=137 Identities=23% Similarity=0.371 Sum_probs=101.0
Q ss_pred CCCeEEEEcCCchHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEecch
Q 043623 194 GLSSLVEVGGGTGSFARIIS-EAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFKLI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~~v 261 (359)
...+|||+|||+|.++..++ +.+|+.+++++|+ +++++.++. .++++|+.+|+.+ + ++ .||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56899999999999999999 5578999999999 888887764 4589999999999 5 43 6999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh-cCCcccCHHHHHHHHHhcC
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC-VPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~t~~e~~~ll~~aG 339 (359)
+|++++.. .+|+++.+.|++ +|.+++.+......... ....... +....+.. ..+. +.++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPNHNDELPE-QLEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEEHSHHHHH-HHHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEEECChHHHHHH-HHHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99999864 779999999999 89999988872221110 0101001 11111111 1122 8899999999998
No 29
>PRK06922 hypothetical protein; Provisional
Probab=99.59 E-value=1e-14 Score=143.45 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=110.5
Q ss_pred CChhHhhhhChHHHHHHHHHhhcCccch---HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHH
Q 043623 154 INIWGYAEQNHEFNNLFNQGLASDSQMA---KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHV 229 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 229 (359)
..+|+++..+++...+|...|....... ......++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 5679999888888888887665533222 11122233 44678999999999999999999999999999999 677
Q ss_pred HhcCCC-----CCCceEEeCCCCC-C--CC--CccEEEecchhccC-----------ChhHHHHHHHHHHHhcCCCCCCc
Q 043623 230 IADLPE-----TDNLKFIAGDMNQ-S--IP--SADAFLFKLIFHDY-----------DDEVCLKLLKNCREAVASSDGRE 288 (359)
Q Consensus 230 i~~a~~-----~~rv~~~~~d~~~-~--~~--~~D~i~~~~vlh~~-----------~d~~~~~iL~~~~~~L~p~~~gG 288 (359)
++.+++ ..++.++.+|+.+ + ++ .||+|+++.++|++ ++++..++|++++++||| ||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence 877653 3567888899876 3 43 49999999999976 345678999999999999 99
Q ss_pred eEEEEeeecCCC
Q 043623 289 KVIIVDIVVNEK 300 (359)
Q Consensus 289 ~lli~e~~~~~~ 300 (359)
+++|.|...++.
T Consensus 532 rLII~D~v~~E~ 543 (677)
T PRK06922 532 RIIIRDGIMTED 543 (677)
T ss_pred EEEEEeCccCCc
Confidence 999999766543
No 30
>PRK05785 hypothetical protein; Provisional
Probab=99.58 E-value=8.3e-14 Score=123.39 Aligned_cols=154 Identities=11% Similarity=0.104 Sum_probs=108.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDE 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~ 268 (359)
.++.+|||||||||.++..+++.+ +.+++++|. ++|++.+++. ..++.+|+.+ |++ .||+|++..+||+++|.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 346899999999999999999987 579999999 8899988753 3567888888 766 39999999999999886
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh--hhh-hcCC-------------cccCHHHHH
Q 043623 269 VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL--MMT-CVPG-------------IERSEKEWE 332 (359)
Q Consensus 269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~g-------------~~~t~~e~~ 332 (359)
+ +.|++++++||| . ++|++...++...... ....++... .+. ..++ ...+.+++.
T Consensus 127 ~--~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~--~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~ 197 (226)
T PRK05785 127 E--KVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRK--YLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHR 197 (226)
T ss_pred H--HHHHHHHHHhcC---c--eEEEEeCCCCcHHHHH--HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHH
Confidence 4 679999999998 3 4456665444321100 000111110 011 1122 234889999
Q ss_pred HHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623 333 RLFFDAGFTSYKITPLL-GLRSFIEVYL 359 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 359 (359)
++++++| ..++...+. |...++.++|
T Consensus 198 ~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 198 EIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHh-CceEEEEccccEEEEEEEee
Confidence 9999984 767777774 5566777665
No 31
>PRK08317 hypothetical protein; Provisional
Probab=99.58 E-value=5.2e-14 Score=125.73 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=112.3
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--C
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--S 252 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~ 252 (359)
.++..+. +.++.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ ..+++++.+|+.. +++ .
T Consensus 10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 3455555 6678899999999999999999988 7889999999 666665543 5678999999887 554 4
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCc-hHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKP-EITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
||+|++.+++|++++. ..+++++++.|+| ||.+++.++......... ...........+. .......+..+|
T Consensus 88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 160 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DHFADPWLGRRL 160 (241)
T ss_pred ceEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHH--hcCCCCcHHHHH
Confidence 9999999999999885 4679999999999 999999886432211110 0001111111111 112233456789
Q ss_pred HHHHHhcCCceeeEEec
Q 043623 332 ERLFFDAGFTSYKITPL 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.++|+++||+.+++...
T Consensus 161 ~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 161 PGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHcCCCceeEEEE
Confidence 99999999998776443
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=4.8e-14 Score=127.78 Aligned_cols=151 Identities=12% Similarity=0.223 Sum_probs=109.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-C-CCCccEEE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S-IPSADAFL 257 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~-~~~~D~i~ 257 (359)
..++..++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.++.+|+.+ . ...||+|+
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 56677666 66788999999999999999999999999999999 788888765 5679999999876 2 23599999
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH-----hhhhhhh--hcCCcccCHHH
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL-----YDALMMT--CVPGIERSEKE 330 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~g~~~t~~e 330 (359)
++.++|+.++. .++|++++++|+| ||.+++.- ++....+........ +...+.. .......+..+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 170 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHA 170 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCC---CcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence 99999988875 4789999999999 89888752 221111100000000 0000000 01134467889
Q ss_pred HHHHHHhcCCce
Q 043623 331 WERLFFDAGFTS 342 (359)
Q Consensus 331 ~~~ll~~aGf~~ 342 (359)
+.+++.++|+.+
T Consensus 171 ~~~~l~~~g~~v 182 (258)
T PRK01683 171 YYDALAPAACRV 182 (258)
T ss_pred HHHHHHhCCCce
Confidence 999999999874
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.58 E-value=2.2e-14 Score=130.04 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=109.8
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCceEEeCCCCCCCCCc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP-------ETDNLKFIAGDMNQSIPSA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~-------~~~rv~~~~~d~~~~~~~~ 253 (359)
..++++.. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.++ ..++|++...|+.+-.+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45677776 8899999999999999999999998 789999999 55554433 2678999999988732379
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|.|++..++.|++.+....+++++.+.|+| ||++++......+............+ +.....+||..++..++..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~~~~~~~~~--i~kyiFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHAERRSSSDF--IRKYIFPGGYLPSLSEILR 203 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHHCTTCCCHH--HHHHTSTTS---BHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchhhcCCCceE--EEEeeCCCCCCCCHHHHHH
Confidence 999999999999888788999999999999 99998877766543211000000011 1122246888899999999
Q ss_pred HHHhcCCceeeEEecC
Q 043623 334 LFFDAGFTSYKITPLL 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
.++++||++..+..++
T Consensus 204 ~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 204 AAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHTT-EEEEEEE-H
T ss_pred HHhcCCEEEEEEEEcC
Confidence 9999999999887764
No 34
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=8.3e-15 Score=132.51 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=106.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CCC--CccEEEecc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SIP--SADAFLFKL 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~~--~~D~i~~~~ 260 (359)
.++.+|||||||+|.++..+++. +.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 35679999999999999999987 468999999 788887764 3678999999866 232 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHH-HHHHHhhhhhh-----hhcCCcccCHHHHHHH
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT-EAKLLYDALMM-----TCVPGIERSEKEWERL 334 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~g~~~t~~e~~~l 334 (359)
+||+++++. ++|+++.++||| ||.++++.............. ... .....+. ........+++++.++
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 194 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFD-YVQAGMPKRKKRTLSPDYPLDPEQVYQW 194 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChH-HHHhcCccccccCCCCCCCCCHHHHHHH
Confidence 999998764 789999999999 999988755432110000000 000 0000000 0011224588999999
Q ss_pred HHhcCCceeeEEecCCc
Q 043623 335 FFDAGFTSYKITPLLGL 351 (359)
Q Consensus 335 l~~aGf~~~~~~~~~~~ 351 (359)
|+++||+++.+..+.++
T Consensus 195 l~~aGf~~~~~~gi~~~ 211 (255)
T PRK11036 195 LEEAGWQIMGKTGVRVF 211 (255)
T ss_pred HHHCCCeEeeeeeEEEE
Confidence 99999999887765443
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=8.9e-14 Score=120.55 Aligned_cols=141 Identities=15% Similarity=0.139 Sum_probs=104.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~ 253 (359)
..+++.++ ..++.+|||+|||+|.++..++++ +.+++++|+ +.+++.+++ .-++.+...|+.. +.+ .|
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 45566555 445689999999999999999986 568999999 777776543 2246777788765 443 59
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|+|+++.++|+++++....++++++++|+| ||++++++....+....++ ......+.+++.+
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~~---------------~~~~~~~~~el~~ 157 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCHM---------------PFSFTFKEDELRQ 157 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCCC---------------CcCccCCHHHHHH
Confidence 999999999999887788999999999999 9998887765432211100 0011348899999
Q ss_pred HHHhcCCceeeEE
Q 043623 334 LFFDAGFTSYKIT 346 (359)
Q Consensus 334 ll~~aGf~~~~~~ 346 (359)
+|+ +|++....
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 996 47777665
No 36
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=6e-14 Score=125.14 Aligned_cols=147 Identities=15% Similarity=0.161 Sum_probs=104.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623 193 DGLSSLVEVGGGTGSFARIISEA----FPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SADAFLFKLI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D~i~~~~v 261 (359)
.++.+|||||||+|.++..+++. .|+.+++++|+ +++++.+++ ..++++...+... +.+ .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45689999999999999888763 46779999999 888887765 3557776665443 322 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh-h---hc-C----CcccCHHHHH
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM-T---CV-P----GIERSEKEWE 332 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~----g~~~t~~e~~ 332 (359)
|||+++++..++|++++++++ |.+++.+...+... +... ........ . .. + .+.++.+|+.
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~----~~~~-~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLA----YALF-WAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHH----HHHH-HHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 999999887899999999985 56777776654211 0000 00000000 0 01 1 2457999999
Q ss_pred HHHHhcCCceeeEEecCC
Q 043623 333 RLFFDAGFTSYKITPLLG 350 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~~ 350 (359)
+++++ ||++...+++..
T Consensus 209 ~ll~~-Gf~~~~~~~~~~ 225 (232)
T PRK06202 209 ALAPQ-GWRVERQWPFRY 225 (232)
T ss_pred HHhhC-CCeEEeccceee
Confidence 99999 999988877653
No 37
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.55 E-value=8.1e-14 Score=123.18 Aligned_cols=144 Identities=12% Similarity=0.132 Sum_probs=102.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCccEEEecchhcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSADAFLFKLIFHD 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~D~i~~~~vlh~ 264 (359)
.+..+|||||||+|.++..+++. +.+++++|+ +++++.+++ .+++++..+|+.+....||+|++..++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45789999999999999999886 458999999 788877654 25899999999873366999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh---cCCcccCHHHHHHHHHhcCCc
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC---VPGIERSEKEWERLFFDAGFT 341 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~t~~e~~~ll~~aGf~ 341 (359)
++++...++++++.+.+++ + .++... +.... ...... ....+... ..-..++.+++.++++++||+
T Consensus 132 ~~~~~~~~~l~~i~~~~~~---~-~~i~~~---~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 200 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKE---R-VIFTFA---PKTAW---LAFLKM-IGELFPGSSRATSAYLHPMTDLERALGELGWK 200 (219)
T ss_pred CCHHHHHHHHHHHHHHhCC---C-EEEEEC---CCchH---HHHHHH-HHhhCcCcccccceEEecHHHHHHHHHHcCce
Confidence 9877778899999998876 4 333321 11110 101101 11111000 112345899999999999999
Q ss_pred eeeEEecC
Q 043623 342 SYKITPLL 349 (359)
Q Consensus 342 ~~~~~~~~ 349 (359)
++......
T Consensus 201 v~~~~~~~ 208 (219)
T TIGR02021 201 IVREGLVS 208 (219)
T ss_pred eeeeeccc
Confidence 99887664
No 38
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.54 E-value=6.1e-14 Score=118.38 Aligned_cols=172 Identities=12% Similarity=0.159 Sum_probs=127.8
Q ss_pred CccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC--CCCC
Q 043623 177 DSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ--SIPS 252 (359)
Q Consensus 177 ~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~--~~~~ 252 (359)
.++....++..++ .....+|+|+|||+|..+..|++++|...++|+|. ++|++.|+. ..+++|..+|+.+ |-++
T Consensus 15 RtRPa~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~ 92 (257)
T COG4106 15 RTRPARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQP 92 (257)
T ss_pred ccCcHHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCc
Confidence 3444478888888 88889999999999999999999999999999998 899998865 7899999999988 5556
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH-----hhhhhhh--hcCCcc
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL-----YDALMMT--CVPGIE 325 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~g~~ 325 (359)
+|+++.+.+||-.+|. .++|.++...|.| ||.|.|.=+..-+ .+.+...... +.-.+.. ..+...
T Consensus 93 ~dllfaNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQmPdN~d---epsH~~mr~~A~~~p~~~~l~~~~~~r~~v 164 (257)
T COG4106 93 TDLLFANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQMPDNLD---EPSHRLMRETADEAPFAQELGGRGLTRAPL 164 (257)
T ss_pred cchhhhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEECCCccC---chhHHHHHHHHhcCchhhhhCccccccCCC
Confidence 9999999999988885 5889999999999 8888775433222 2211111111 1111111 123456
Q ss_pred cCHHHHHHHHHhcCCceeeEEec------CCcceEEEEEC
Q 043623 326 RSEKEWERLFFDAGFTSYKITPL------LGLRSFIEVYL 359 (359)
Q Consensus 326 ~t~~e~~~ll~~aGf~~~~~~~~------~~~~~~i~~~~ 359 (359)
.++..|-++|...+=+ +.|+.+ ++...|+++.|
T Consensus 165 ~s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 165 PSPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred CCHHHHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence 6899999999988643 455543 56667887765
No 39
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.51 E-value=5e-14 Score=106.93 Aligned_cols=88 Identities=17% Similarity=0.416 Sum_probs=75.2
Q ss_pred EEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCCC--ccEEEecchhccCChhHHH
Q 043623 199 VEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIPS--ADAFLFKLIFHDYDDEVCL 271 (359)
Q Consensus 199 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~~--~D~i~~~~vlh~~~d~~~~ 271 (359)
||+|||+|..+..+++. +..+++++|. +++++.+++ ..++.++.+|+.+ ++++ ||+|++.+++|++++ ..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence 79999999999999998 8889999999 677777664 5667799999998 7763 999999999999944 56
Q ss_pred HHHHHHHHhcCCCCCCceEEE
Q 043623 272 KLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 272 ~iL~~~~~~L~p~~~gG~lli 292 (359)
+++++++++||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 889999999999 898875
No 40
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.50 E-value=3.2e-13 Score=117.67 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=88.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCCCCC--CccEEEecchhccCCh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQSIP--SADAFLFKLIFHDYDD 267 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~~~d 267 (359)
..++.+|||||||+|.++..+++..|+.+++++|+ +++++.+++ ..++.+..+|+.++++ .||+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34668999999999999999999889999999999 889998876 5678899999888654 4999999999999988
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 268 EVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
++..++++++.+++ ++.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~-----~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS-----NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc-----CcEEEEEEeeCCC
Confidence 78889999999987 4688888886544
No 41
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.50 E-value=5e-14 Score=122.60 Aligned_cols=142 Identities=11% Similarity=0.114 Sum_probs=108.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------C----CCceEEeCCCCCCCCCccEEEecch
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------T----DNLKFIAGDMNQSIPSADAFLFKLI 261 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~----~rv~~~~~d~~~~~~~~D~i~~~~v 261 (359)
+.+|||||||+|.++..|++.. ..++|+|+ +++++.|++ . -|+++...|.+...+.||+|+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 4789999999999999999984 68999999 788887764 2 2577777887775556999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh-hhhhh-----hhcCCcccCHHHHHHHH
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY-DALMM-----TCVPGIERSEKEWERLF 335 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~g~~~t~~e~~~ll 335 (359)
++|..|+ ..+++.+.+.|+| +|+++|......-..... ...+ ..... +.+..+..+++++..++
T Consensus 168 leHV~dp--~~~l~~l~~~lkP---~G~lfittinrt~lS~~~-----~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l 237 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTINRTILSFAG-----TIFLAEIVLRIVPKGTHTWEKFINPEELTSIL 237 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC---CCceEeeehhhhHHHhhc-----cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH
Confidence 9999886 4789999999999 999999877654433221 1111 11111 12345677999999999
Q ss_pred HhcCCceeeEEec
Q 043623 336 FDAGFTSYKITPL 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
..+++++..+...
T Consensus 238 ~~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 238 NANGAQVNDVVGE 250 (282)
T ss_pred HhcCcchhhhhcc
Confidence 9999998877654
No 42
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=1.7e-12 Score=117.12 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=104.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAF 256 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i 256 (359)
..+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++ ...+.++.+|+.+ +++ .||+|
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 34455554 345689999999999999988774 568999999 888887765 3446789999987 655 49999
Q ss_pred EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHH
Q 043623 257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFF 336 (359)
Q Consensus 257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~ 336 (359)
+++.++|..++. ..+|++++++|+| ||.+++..+..... ......+...-.........+.++|.++++
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~------~el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSL------PELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCch------HHHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 999999877765 4789999999999 89998876643221 111111111000112344568999999999
Q ss_pred hcCCce
Q 043623 337 DAGFTS 342 (359)
Q Consensus 337 ~aGf~~ 342 (359)
..|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 988764
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.48 E-value=6.4e-13 Score=118.70 Aligned_cols=136 Identities=19% Similarity=0.266 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CCC--CccEEEecchhccCCh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d 267 (359)
.+.+|||||||+|.++..+++.+|+.+++++|. +.+++.++. .+++.++.+|+.+ +++ .||+|++.+++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357999999999999999999999999999999 667765543 4589999999988 544 4999999999998877
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEE
Q 043623 268 EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKIT 346 (359)
Q Consensus 268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 346 (359)
. .++|++++++|+| ||.+++.++..... ....... ...+...++.++|.++++++ |+...+.
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFGPGTL------HELRQSF-----GQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCCccCH------HHHHHHH-----HHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 5 4789999999999 99999876543221 0111111 11234556889999999998 8876653
No 44
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.47 E-value=1.2e-12 Score=111.93 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=106.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCCCccEEEecchhccC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIPSADAFLFKLIFHDY 265 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~ 265 (359)
.++.+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|..+ ..+.||+|+++..+|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 8999999 778776654 3468889999887 33469999999888766
Q ss_pred Chh-------------------HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623 266 DDE-------------------VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER 326 (359)
Q Consensus 266 ~d~-------------------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
++. ...++|+++.+.|+| ||+++++.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~---------------------------- 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN---------------------------- 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence 532 135689999999999 999998764321
Q ss_pred CHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 327 SEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 327 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
...++.++++++||....+..-+..+--+++||
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 356778999999999988888887777777775
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.47 E-value=6.2e-13 Score=126.52 Aligned_cols=153 Identities=12% Similarity=0.083 Sum_probs=114.0
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCCCCCCccEEEe
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQSIPSADAFLF 258 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~~~~~~D~i~~ 258 (359)
.+++.+. +.++.+|||||||+|.++..+++.+ +++++++|+ +++++.+++ ...+++...|+.+....||+|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 4555555 6778899999999999999999875 579999999 778877654 33578888887653235999999
Q ss_pred cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623 259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA 338 (359)
Q Consensus 259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a 338 (359)
..+++|.++.....+++++++.|+| ||++++.....+...... ....+ .....+|..++.+++.+.++ .
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~--~yifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWIN--KYIFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCce--eeecCCCcCCCHHHHHHHHH-C
Confidence 9999999877777899999999999 999999876544332111 00111 11235677788999888866 5
Q ss_pred CCceeeEEecC
Q 043623 339 GFTSYKITPLL 349 (359)
Q Consensus 339 Gf~~~~~~~~~ 349 (359)
||.+.++..++
T Consensus 304 ~~~v~d~~~~~ 314 (383)
T PRK11705 304 LFVMEDWHNFG 314 (383)
T ss_pred CcEEEEEecCh
Confidence 89988877664
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.46 E-value=1.1e-12 Score=120.74 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=104.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~ 253 (359)
..++..++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ .-++++...|+.. +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~f 185 (287)
T PRK12335 110 SEVLEAVQ--TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEY 185 (287)
T ss_pred HHHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCc
Confidence 34444444 334569999999999999999885 579999999 777776543 3368888888876 344 49
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|+|++..+||+.+++....+++++.+.|+| ||.++++.....+....+ ......++.+|+.+
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~---------------~p~~~~~~~~el~~ 247 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP---------------MPFSFTFKEGELKD 247 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC---------------CCCCcccCHHHHHH
Confidence 999999999999888888999999999999 999887665433321110 00012247899999
Q ss_pred HHHhcCCceeeEE
Q 043623 334 LFFDAGFTSYKIT 346 (359)
Q Consensus 334 ll~~aGf~~~~~~ 346 (359)
+++. |+++...
T Consensus 248 ~~~~--~~i~~~~ 258 (287)
T PRK12335 248 YYQD--WEIVKYN 258 (287)
T ss_pred HhCC--CEEEEEe
Confidence 9975 8887764
No 47
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.46 E-value=1.3e-12 Score=116.30 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=101.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCccEEEecchhcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSADAFLFKLIFHD 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~D~i~~~~vlh~ 264 (359)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .+++.+..+|+......||+|++..++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456899999999999999999875 46999999 778777654 25899999995444346999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh-h-hhcCCcccCHHHHHHHHHhcCCce
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM-M-TCVPGIERSEKEWERLFFDAGFTS 342 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~t~~e~~~ll~~aGf~~ 342 (359)
++++....+++++.+.+++ +.++.... .... ...........- . ........+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~~---~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFAP---YTPL---LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEECC---ccHH---HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9988888999999987654 44433221 1100 000000000000 0 001234458899999999999999
Q ss_pred eeEEecC
Q 043623 343 YKITPLL 349 (359)
Q Consensus 343 ~~~~~~~ 349 (359)
.++.++.
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9998874
No 48
>PRK04266 fibrillarin; Provisional
Probab=99.45 E-value=2.7e-12 Score=113.26 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=97.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCceEEeCCCCCC-----CC-CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIA----DLPETDNLKFIAGDMNQS-----IP-SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~----~a~~~~rv~~~~~d~~~~-----~~-~~D~i~~~~ 260 (359)
+.++.+|||+|||+|.++..+++..+..+++++|. +.+++ .++...+|.++.+|...+ .+ .+|+|+.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~-- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ-- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence 66788999999999999999999887678999999 66655 444457899999998753 12 3899874
Q ss_pred hhccCChh-HHHHHHHHHHHhcCCCCCCceEEEE-eeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623 261 IFHDYDDE-VCLKLLKNCREAVASSDGREKVIIV-DIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA 338 (359)
Q Consensus 261 vlh~~~d~-~~~~iL~~~~~~L~p~~~gG~lli~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a 338 (359)
+.+++ ....+|+++++.||| ||+++|. ... +-..... .. +..++..++++++
T Consensus 148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~-~~d~~~~---~~----------------~~~~~~~~~l~~a 201 (226)
T PRK04266 148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKAR-SIDVTKD---PK----------------EIFKEEIRKLEEG 201 (226)
T ss_pred ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecc-cccCcCC---HH----------------HHHHHHHHHHHHc
Confidence 34333 234568999999999 9999984 321 1111100 00 1224456999999
Q ss_pred CCceeeEEecCCc---ceEEEEE
Q 043623 339 GFTSYKITPLLGL---RSFIEVY 358 (359)
Q Consensus 339 Gf~~~~~~~~~~~---~~~i~~~ 358 (359)
||+.++...+..+ +.+++.+
T Consensus 202 GF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 202 GFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred CCeEEEEEcCCCCcCCeEEEEEE
Confidence 9999999888543 5555443
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.45 E-value=3.2e-14 Score=109.40 Aligned_cols=87 Identities=23% Similarity=0.420 Sum_probs=58.2
Q ss_pred EEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CceEEeCCCCCC-CC-CccEEEecchhccCC
Q 043623 199 VEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TD---NLKFIAGDMNQS-IP-SADAFLFKLIFHDYD 266 (359)
Q Consensus 199 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~---rv~~~~~d~~~~-~~-~~D~i~~~~vlh~~~ 266 (359)
||||||+|.++..+++++|..+++++|+ +.+++.+++ .. ++++...+..+. .+ .||+|++.++||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 889977775 22 234444444442 22 699999999999995
Q ss_pred hhHHHHHHHHHHHhcCCCCCCceE
Q 043623 267 DEVCLKLLKNCREAVASSDGREKV 290 (359)
Q Consensus 267 d~~~~~iL~~~~~~L~p~~~gG~l 290 (359)
+ ...+|+++++.|+| ||.|
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 5 45889999999999 8875
No 50
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.44 E-value=1e-12 Score=119.09 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCchH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC--------------------------
Q 043623 193 DGLSSLVEVGGGTGS----FARIISEAFP-----SIKCSVLEL-PHVIADLPET-------------------------- 236 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~i~~a~~~-------------------------- 236 (359)
.++.+|+|+|||||. +++.+++.+| +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 445799999999996 5666677654 578999999 7888877641
Q ss_pred -------CCceEEeCCCCC-CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 237 -------DNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 237 -------~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.+|+|..+|+.+ +.+ .||+|++.++||+++++...++++++++.|+| ||.+++-..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEECc
Confidence 379999999998 433 49999999999999988888999999999999 999888543
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.44 E-value=1.5e-12 Score=128.30 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=110.1
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC---CCC--
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ---SIP-- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~---~~~-- 251 (359)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|. +.+++.++. .++++++.+|+.+ +++
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 45555555 4456799999999999999999875 37999998 778776542 4679999999964 344
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
.||+|++..++|++++++..++|+++++.|+| ||.+++.|.......... .. ......++...|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHHH
Confidence 49999999999999998888999999999999 999999987654432110 00 111223468899
Q ss_pred HHHHHhcCCceeeE
Q 043623 332 ERLFFDAGFTSYKI 345 (359)
Q Consensus 332 ~~ll~~aGf~~~~~ 345 (359)
.++|.++||.....
T Consensus 167 ~~~f~~~~~~~~~~ 180 (475)
T PLN02336 167 TKVFKECHTRDEDG 180 (475)
T ss_pred HHHHHHheeccCCC
Confidence 99999999987643
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.44 E-value=1.9e-12 Score=111.50 Aligned_cols=120 Identities=18% Similarity=0.300 Sum_probs=93.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-CccEEEecchhc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-SADAFLFKLIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-~~D~i~~~~vlh 263 (359)
..+..+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 56778999999999999999999999999999999 777776653 3578999998865444 499999987654
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 343 (359)
+ ...+++.+.+.|+| ||++++..... .+.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence 3 24578999999999 89887743210 035677889999999877
Q ss_pred eEEe
Q 043623 344 KITP 347 (359)
Q Consensus 344 ~~~~ 347 (359)
++..
T Consensus 153 ~~~~ 156 (187)
T PRK08287 153 DCVQ 156 (187)
T ss_pred eEEE
Confidence 7543
No 53
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.41 E-value=3.3e-13 Score=116.78 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=105.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCC--ceEEeCCCCC-CC--CCccEEEecchhcc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDN--LKFIAGDMNQ-SI--PSADAFLFKLIFHD 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~r--v~~~~~d~~~-~~--~~~D~i~~~~vlh~ 264 (359)
.+.+|||||||-|.++..+++.. .+|+++|+ ++.|+.|+. ... |.+.....++ .. ..||+|++..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 56899999999999999999985 79999999 788888774 233 4466666665 22 46999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhh-hhc-----CCcccCHHHHHHHHHh
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMM-TCV-----PGIERSEKEWERLFFD 337 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~g~~~t~~e~~~ll~~ 337 (359)
.+|++ .+++.+.+.+|| ||.+++........... ...... ..+ ... -.+...++|+..++.+
T Consensus 137 v~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka~~------~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~ 205 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP---GGILFLSTINRTLKAYL------LAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLG 205 (243)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHHHH------HHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhccc
Confidence 99986 479999999999 88888877663332111 111111 111 112 2456789999999999
Q ss_pred cCCceeeEEecC
Q 043623 338 AGFTSYKITPLL 349 (359)
Q Consensus 338 aGf~~~~~~~~~ 349 (359)
+|+.+.+...+.
T Consensus 206 ~~~~~~~~~g~~ 217 (243)
T COG2227 206 ANLKIIDRKGLT 217 (243)
T ss_pred CCceEEeecceE
Confidence 999998887663
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.41 E-value=1.9e-12 Score=115.99 Aligned_cols=152 Identities=9% Similarity=0.110 Sum_probs=101.9
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHH------HhcCCC-CCCceEEeCCCCC-C-CC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHV------IADLPE-TDNLKFIAGDMNQ-S-IP 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~------i~~a~~-~~rv~~~~~d~~~-~-~~ 251 (359)
..+...++ --.+++|||||||+|.++..++.+.|. .++|+|- +.. ++.... ..++.+....+++ + ..
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34455553 124689999999999999999999775 7999996 222 222221 2333444334444 3 23
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC--CcccCHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP--GIERSEK 329 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~t~~ 329 (359)
.||+|++..||+|..++ ...|+.+++.|+| ||.+++-..+.+......-.+.. .+ +.+. ....|..
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~L~P~~-rY------a~m~nv~FiPs~~ 249 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDENTVLVPED-RY------AKMRNVWFIPSVA 249 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCCceEEccCC-cc------cCCCceEEeCCHH
Confidence 59999999999998886 4779999999999 78777655555544332100110 00 0111 2345999
Q ss_pred HHHHHHHhcCCceeeEEec
Q 043623 330 EWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 330 e~~~ll~~aGf~~~~~~~~ 348 (359)
.+..|++++||+.+++...
T Consensus 250 ~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 250 ALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHHHcCCceEEEecC
Confidence 9999999999999999765
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=5.8e-13 Score=102.82 Aligned_cols=88 Identities=19% Similarity=0.389 Sum_probs=73.2
Q ss_pred EEEEcCCchHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CC--CCccEEEec-chhcc
Q 043623 198 LVEVGGGTGSFARIISEAF---PSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SI--PSADAFLFK-LIFHD 264 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~--~~~D~i~~~-~vlh~ 264 (359)
|||+|||+|..+..+.+.+ |..+++++|+ +++++.+++ ..+++++.+|+.+ +. ..||+|+++ .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999986 5689999999 788887764 3589999999988 43 359999995 55999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCc
Q 043623 265 YDDEVCLKLLKNCREAVASSDGRE 288 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG 288 (359)
+++++..++|+++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 66
No 56
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.38 E-value=4.5e-12 Score=117.21 Aligned_cols=97 Identities=16% Similarity=0.336 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CCC-Cc-----cE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SIP-SA-----DA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~~-~~-----D~ 255 (359)
+++.+|||+|||+|..+..++++.+ ..+++++|+ +++++.+++ ..+|.++.+|+.+ +++ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3567999999999999999999987 589999999 778766543 2346678999987 233 22 35
Q ss_pred EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
+++...+++++++++..+|++++++|+| ||.++|
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 5666789999999999999999999999 888876
No 57
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.37 E-value=1.3e-11 Score=108.20 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCceEEeCCCCC-C---
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------------ETDNLKFIAGDMNQ-S--- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------------~~~rv~~~~~d~~~-~--- 249 (359)
.+..+|||+|||.|..+..|+++ +.+|+++|+ +.+++.+. ...+|+++.+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45689999999999999999986 678999999 77776531 13579999999998 3
Q ss_pred CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC-CchHHHHHHHhhhhhhhhcCCcccCH
Q 043623 250 IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD-KPEITEAKLLYDALMMTCVPGIERSE 328 (359)
Q Consensus 250 ~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
.+.||.|+-..++|+++.+....+++++.++|+| ||++++.....+.... .+ ....+.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~gp------------------p~~~~~ 169 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAGP------------------PFSVSP 169 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCCc------------------CCCCCH
Confidence 2359999999999999999889999999999999 8987777665432211 11 012488
Q ss_pred HHHHHHHHhcCCceeeEEe
Q 043623 329 KEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 329 ~e~~~ll~~aGf~~~~~~~ 347 (359)
+++.++|+. +|.+..+..
T Consensus 170 ~eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 170 AEVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHHhcC-CceEEEEee
Confidence 999999974 455554443
No 58
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=5.2e-12 Score=107.64 Aligned_cols=140 Identities=14% Similarity=0.227 Sum_probs=96.2
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~ 253 (359)
..++..++ ..++.++||+|||.|..+..|+++ +..|+++|. +..++.++. .-.|+....|+.+ .++ .|
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 45666666 556789999999999999999998 678999998 555554432 4448889999988 555 49
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|+|++..++++.+.+...++++++.+.++| ||.+++......+....+ .. ....+...|+.+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~~~d~p~~--------~~-------~~f~~~~~EL~~ 157 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFMETPDYPCP--------SP-------FPFLLKPGELRE 157 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB--SSS--S--------S---------S--B-TTHHHH
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecccCCCCCC--------CC-------CCcccCHHHHHH
Confidence 999999999999999889999999999999 888777655432221111 00 011236678888
Q ss_pred HHHhcCCceeeE
Q 043623 334 LFFDAGFTSYKI 345 (359)
Q Consensus 334 ll~~aGf~~~~~ 345 (359)
.++ ||.+++.
T Consensus 158 ~y~--dW~il~y 167 (192)
T PF03848_consen 158 YYA--DWEILKY 167 (192)
T ss_dssp HTT--TSEEEEE
T ss_pred HhC--CCeEEEE
Confidence 886 5777664
No 59
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.36 E-value=6.4e-12 Score=116.08 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=95.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCCCCccEEEecch
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSIPSADAFLFKLI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~~~~D~i~~~~v 261 (359)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++.|...|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999986 568999999 778876653 13578888887653345999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh---cCCcccCHHHHHHHHHhc
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC---VPGIERSEKEWERLFFDA 338 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~t~~e~~~ll~~a 338 (359)
+||++++....+++.+.+ +.+ |+++|.. .+.... +......... +... ......+.++++++|+++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~---~~~l~~~g~~-~~g~~~~~r~y~~s~eel~~lL~~A 290 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLY---YDILKRIGEL-FPGPSKATRAYLHAEADVERALKKA 290 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchH---HHHHHHHHhh-cCCCCcCceeeeCCHHHHHHHHHHC
Confidence 999998877778888875 444 4555532 111110 0000001000 0000 011233799999999999
Q ss_pred CCceeeEEec
Q 043623 339 GFTSYKITPL 348 (359)
Q Consensus 339 Gf~~~~~~~~ 348 (359)
||++.+....
T Consensus 291 Gf~v~~~~~~ 300 (315)
T PLN02585 291 GWKVARREMT 300 (315)
T ss_pred CCEEEEEEEe
Confidence 9998776544
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.35 E-value=8.9e-12 Score=106.50 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=88.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-CCccEEEecchhccC
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-PSADAFLFKLIFHDY 265 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-~~~D~i~~~~vlh~~ 265 (359)
+.+|||||||+|.++..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ +. +.||+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 68999999999999999999999999999999 666655432 3579999999987 32 3599998876 5432
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHh---cCCce
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFD---AGFTS 342 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~---aGf~~ 342 (359)
..+++.+++.|+| ||.+++... . . ...++..+.++ .||+.
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~~-----~-~-----------------------~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYKG-----K-K-----------------------YLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEcC-----C-C-----------------------cHHHHHHHHHhhhhcCceE
Confidence 3568888999999 899887531 1 1 23334444444 79999
Q ss_pred eeEEecCCc
Q 043623 343 YKITPLLGL 351 (359)
Q Consensus 343 ~~~~~~~~~ 351 (359)
+++.+....
T Consensus 165 ~~~~~~~~~ 173 (181)
T TIGR00138 165 LEVPPLTGP 173 (181)
T ss_pred eeccccCCC
Confidence 888887543
No 61
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=1.4e-11 Score=116.12 Aligned_cols=108 Identities=18% Similarity=0.324 Sum_probs=86.7
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCCCCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQSIP 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~~~~ 251 (359)
..+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++..|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 45666666 33346999999999999999999999999999999 667776653 2378999999887443
Q ss_pred --CccEEEecchhcc---CChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 252 --SADAFLFKLIFHD---YDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 252 --~~D~i~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
.||+|+++-.+|. +++..+.++++.+++.|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 5999999866653 4566677999999999999 99998874
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=99.34 E-value=6.6e-12 Score=113.79 Aligned_cols=137 Identities=14% Similarity=0.178 Sum_probs=98.1
Q ss_pred CCCCeEEEEcCCchHHHHH--HHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCCCC---CCccEEEe
Q 043623 193 DGLSSLVEVGGGTGSFARI--ISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQSI---PSADAFLF 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~~~---~~~D~i~~ 258 (359)
.++.+|+|||||.|.++.. ++..+|+.+++++|. +++++.|++ .++|+|+.+|..+.. ..||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3679999999998855443 335679999999999 777776553 578999999998732 36999999
Q ss_pred cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623 259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA 338 (359)
Q Consensus 259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a 338 (359)
. ++|+|+.++-.++|+++++.|+| ||.+++--. .. ..... ....++++.+
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~~---~G-------~r~~L----------Yp~v~~~~~~------ 251 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRSA---HG-------ARAFL----------YPVVDPCDLR------ 251 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEecc---cc-------hHhhc----------CCCCChhhCC------
Confidence 9 99999766678999999999999 887776431 11 01101 1111333333
Q ss_pred CCceeeEE-ecC-CcceEEEEEC
Q 043623 339 GFTSYKIT-PLL-GLRSFIEVYL 359 (359)
Q Consensus 339 Gf~~~~~~-~~~-~~~~~i~~~~ 359 (359)
||.+..++ |.+ -++++|.++|
T Consensus 252 gf~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 252 GFEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred CeEEEEEECCCCCceeeEEEEEe
Confidence 99976654 443 4689999886
No 63
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.33 E-value=3.2e-11 Score=103.36 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-CccEEEecchhc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh 263 (359)
+++.+|||||||+|..+..++++.|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .||+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 3478999999999999999999999999999999 777776653 3459999999987 333 5999998752
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 343 (359)
.+ ...+++.+++.|+| ||++++.+... ...++.++.++.|+++.
T Consensus 122 --~~--~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --AS--LSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred --cC--HHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence 22 35789999999999 99998874320 23445666677798877
Q ss_pred eEEec
Q 043623 344 KITPL 348 (359)
Q Consensus 344 ~~~~~ 348 (359)
++.-.
T Consensus 166 ~~~~~ 170 (187)
T PRK00107 166 EVIEL 170 (187)
T ss_pred eeEEE
Confidence 76543
No 64
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.32 E-value=2.1e-11 Score=108.77 Aligned_cols=144 Identities=14% Similarity=0.112 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C--C-CCccEEEecchh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S--I-PSADAFLFKLIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~--~-~~~D~i~~~~vl 262 (359)
.++.+|||||||+|.++..+++. ..+++++|. +.+++.+++ ..+++++..|+.+ + . ..||+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35689999999999999998885 468999998 666665543 3457788777765 2 2 249999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH---hhhhhhhh---cCCcccCHHHHHHHHH
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL---YDALMMTC---VPGIERSEKEWERLFF 336 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~g~~~t~~e~~~ll~ 336 (359)
++.++.. .+|+++.+.|+| ||.+++...... ... . ..... +-...... ...+..+.++|.++++
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~---gG~l~v~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKP---GGLVFFSTLNRN---LKS-Y-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLR 194 (233)
T ss_pred hccCCHH--HHHHHHHHHcCC---CcEEEEEecCCC---hHH-H-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHH
Confidence 9988754 679999999999 899887754311 100 0 00000 00000000 1234568999999999
Q ss_pred hcCCceeeEEec
Q 043623 337 DAGFTSYKITPL 348 (359)
Q Consensus 337 ~aGf~~~~~~~~ 348 (359)
++||+++++...
T Consensus 195 ~~Gf~~v~~~~~ 206 (233)
T PRK05134 195 QAGLEVQDITGL 206 (233)
T ss_pred HCCCeEeeeeeE
Confidence 999999888643
No 65
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.32 E-value=6.1e-12 Score=107.88 Aligned_cols=140 Identities=17% Similarity=0.301 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCc-eEEeCCCCC--CCC-CccEEEecchhc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNL-KFIAGDMNQ--SIP-SADAFLFKLIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv-~~~~~d~~~--~~~-~~D~i~~~~vlh 263 (359)
+..+.||+|+|.|..+..++...-+ ++..+|. +..++.|++ ..++ ++.+..+.+ |.+ .||+||+.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 4679999999999999988665432 6777776 677777663 3444 455555554 443 499999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 343 (359)
|++|++.+++|++++.+|+| +|.|+|-|.+...... .+| ...++-.|+.+.|+++|++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D----~~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFD----EEDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEE----TTTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccC----CccCeeecCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 8999998887654321 111 1234556899999999999999999
Q ss_pred eEEecCC
Q 043623 344 KITPLLG 350 (359)
Q Consensus 344 ~~~~~~~ 350 (359)
+.....+
T Consensus 198 ~~~~Q~~ 204 (218)
T PF05891_consen 198 KEEKQKG 204 (218)
T ss_dssp EEEE-TT
T ss_pred EeccccC
Confidence 8776644
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.30 E-value=4.8e-11 Score=111.81 Aligned_cols=108 Identities=16% Similarity=0.250 Sum_probs=84.6
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC-CccE
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP-SADA 255 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~-~~D~ 255 (359)
.++..++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .-..+++..|.++..+ .||+
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3455554 23346899999999999999999999999999999 677776653 2235678888877444 4999
Q ss_pred EEecchhccC---ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 256 FLFKLIFHDY---DDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 256 i~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
|+++-.+|.. ......++++++.+.|+| ||.++|+-.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 9999988863 344567899999999999 999988654
No 67
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.29 E-value=2.5e-11 Score=105.20 Aligned_cols=141 Identities=12% Similarity=0.155 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCC--CccEEEecchhccCC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDYD 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~~ 266 (359)
++..+|||||||+|.++..+++. ...+++++|+ +++++.++. .+++++.+|+.+ +++ .||+|++++++|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 45679999999999999988775 4567899998 777777653 468888888865 233 499999999999998
Q ss_pred hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh----------hhhcCCcccCHHHHHHHHH
Q 043623 267 DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM----------MTCVPGIERSEKEWERLFF 336 (359)
Q Consensus 267 d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~t~~e~~~ll~ 336 (359)
+.. ++|+++.+.+++ +++.-+.. .... . .......-.+ ......+..+.+++.++++
T Consensus 90 d~~--~~l~e~~r~~~~------~ii~~p~~---~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 90 NPE--EILDEMLRVGRH------AIVSFPNF---GYWR-V-RWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG 156 (194)
T ss_pred CHH--HHHHHHHHhCCe------EEEEcCCh---hHHH-H-HHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence 754 678888776543 33321111 0000 0 0000000000 0011234678999999999
Q ss_pred hcCCceeeEEec
Q 043623 337 DAGFTSYKITPL 348 (359)
Q Consensus 337 ~aGf~~~~~~~~ 348 (359)
++||++++..-.
T Consensus 157 ~~Gf~v~~~~~~ 168 (194)
T TIGR02081 157 ELNLRILDRAAF 168 (194)
T ss_pred HCCCEEEEEEEe
Confidence 999999887665
No 68
>PTZ00146 fibrillarin; Provisional
Probab=99.28 E-value=1.9e-10 Score=103.88 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=94.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCceEEeCCCCCC------CCCccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PH----VIADLPETDNLKFIAGDMNQS------IPSADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~i~~a~~~~rv~~~~~d~~~~------~~~~D~i~~~ 259 (359)
+.+..+|||+|||+|.++..+++.. +.-+++++|+ +. +++.++...+|.++.+|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5678899999999999999999986 4568999998 43 556665568899999998753 2359999887
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
.. .+| +...++.++++.||| ||.++|.-.........+ .. ..+ . +|. ++|+++|
T Consensus 210 va---~pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~---pe-~~f-------------~-~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA---QPD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAK---PE-VVF-------------A-SEV-QKLKKEG 263 (293)
T ss_pred CC---Ccc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCC---HH-HHH-------------H-HHH-HHHHHcC
Confidence 63 233 334566789999999 999998422211111111 00 011 2 444 8899999
Q ss_pred CceeeEEecCC
Q 043623 340 FTSYKITPLLG 350 (359)
Q Consensus 340 f~~~~~~~~~~ 350 (359)
|+.++.+.+..
T Consensus 264 F~~~e~v~L~P 274 (293)
T PTZ00146 264 LKPKEQLTLEP 274 (293)
T ss_pred CceEEEEecCC
Confidence 99999988853
No 69
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.28 E-value=8.1e-12 Score=105.32 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=96.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCCCCC--CccEEEecchhcc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQSIP--SADAFLFKLIFHD 264 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~ 264 (359)
-....+++|+|||.|.++..|+.+. -+.+++|+ +.+++.+++ .++|+++..|+-+.+| .||+|+++.++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4556899999999999999999985 37999999 788887764 6899999999988555 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623 265 YDD-EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 265 ~~d-~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 343 (359)
+++ ++...+++++.++|+| ||.+++..... ... ...|.....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~rd----------~~c---------~~wgh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHARD----------ANC---------RRWGHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-H----------HHH---------HHTT-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEecC----------Ccc---------cccCcccchHHHHHHHHHH-hhhe
Confidence 986 6678899999999999 89998876520 110 1134555788999999987 6666
Q ss_pred eEEec
Q 043623 344 KITPL 348 (359)
Q Consensus 344 ~~~~~ 348 (359)
+...+
T Consensus 176 ~~~~~ 180 (201)
T PF05401_consen 176 ERVEC 180 (201)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 66555
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=7.6e-11 Score=103.63 Aligned_cols=132 Identities=13% Similarity=0.145 Sum_probs=99.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCceEEeCCCCCC---
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------------ETDNLKFIAGDMNQS--- 249 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------------~~~rv~~~~~d~~~~--- 249 (359)
..+..+|||+|||.|..+..|+++ +.+|+++|+ +.+++.+. ...+|++..+|+++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 345689999999999999999985 678999999 67666431 146789999999982
Q ss_pred -CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC-CCchHHHHHHHhhhhhhhhcCCcccC
Q 043623 250 -IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK-DKPEITEAKLLYDALMMTCVPGIERS 327 (359)
Q Consensus 250 -~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~t 327 (359)
.+.||+|+-..++|+++.+...++++.+.++|+| ||+++++....++.. ..+ ....+
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~gP------------------p~~~~ 171 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAGP------------------PFSVS 171 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCCC------------------CCCCC
Confidence 2359999999999999999999999999999999 887665544433221 111 01248
Q ss_pred HHHHHHHHHhcCCceeeEEe
Q 043623 328 EKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 328 ~~e~~~ll~~aGf~~~~~~~ 347 (359)
.+|+.++|+. +|.+..+..
T Consensus 172 ~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 172 DEEVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHHHhcC-CceEEEeee
Confidence 9999999964 266555543
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.26 E-value=4e-11 Score=106.24 Aligned_cols=142 Identities=11% Similarity=0.076 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CceEEeCCCCC-CC---CCccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TD-NLKFIAGDMNQ-SI---PSADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~-rv~~~~~d~~~-~~---~~~D~i~~~~vl 262 (359)
.+.+|||+|||+|.++..+++..+ +++++|. +.+++.++. .. ++++...|+.+ +. ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 467999999999999999888644 6999998 667665543 22 58888888766 32 249999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh-h---h---cCCcccCHHHHHHHH
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM-T---C---VPGIERSEKEWERLF 335 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-~---~---~~g~~~t~~e~~~ll 335 (359)
|+..+.. .+|+++++.|+| ||.+++.....+.. . .........+. . . ......+..+|.+++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 191 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTINRTPK--S----YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL 191 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEEecCCCch--H----HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH
Confidence 9998764 689999999999 89988876532111 0 00011111011 0 0 112345889999999
Q ss_pred HhcCCceeeEEec
Q 043623 336 FDAGFTSYKITPL 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
+++||+++++...
T Consensus 192 ~~~G~~i~~~~~~ 204 (224)
T TIGR01983 192 ESAGLRVKDVKGL 204 (224)
T ss_pred HHcCCeeeeeeeE
Confidence 9999999888754
No 72
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.3e-10 Score=104.39 Aligned_cols=109 Identities=13% Similarity=0.266 Sum_probs=87.7
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-~~ 253 (359)
+.+++.++ .....+|||+|||.|.+++.+++.+|+.+++.+|. ..+++.+++ ..+..+...|.+++.. .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 56777777 55556999999999999999999999999999999 567777765 2333567788888655 49
Q ss_pred cEEEecchhccC---ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 254 DAFLFKLIFHDY---DDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 254 D~i~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
|+|+++=-+|.= .+.-+.++++.+.+.|++ ||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 999999998853 234455899999999999 999988765
No 73
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.24 E-value=1.4e-11 Score=106.11 Aligned_cols=145 Identities=17% Similarity=0.246 Sum_probs=109.7
Q ss_pred CeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCC-----CC--CccEEEecc
Q 043623 196 SSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQS-----IP--SADAFLFKL 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~-----~~--~~D~i~~~~ 260 (359)
.+||+||||.|.....+++..|+ +++...|. |.+++..++ ..++.....|+..+ .+ ++|++++-+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999988 99999998 888887664 45666666676652 11 399999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc---ccCHHHHHHHHHh
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI---ERSEKEWERLFFD 337 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~t~~e~~~ll~~ 337 (359)
+|.-.+++.....++++++.||| ||.|++-|....+-.... +. ....++-+..+...|. .++.+++.++|.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 99999999999999999999999 999999988765542211 00 0011222222232232 4689999999999
Q ss_pred cCCceeeE
Q 043623 338 AGFTSYKI 345 (359)
Q Consensus 338 aGf~~~~~ 345 (359)
+||..++.
T Consensus 228 agf~~~~~ 235 (264)
T KOG2361|consen 228 AGFEEVQL 235 (264)
T ss_pred cccchhcc
Confidence 99997764
No 74
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.23 E-value=4.2e-11 Score=101.51 Aligned_cols=99 Identities=15% Similarity=0.341 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--CccEEEecchhcc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--SADAFLFKLIFHD 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~ 264 (359)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++..|.++..+ .||+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 568999999999999999999999999999999 777776653 2338999999998554 5999999987765
Q ss_pred CCh---hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 265 YDD---EVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 265 ~~d---~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
-.+ +-..++++.+.+.|+| ||.++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEee
Confidence 543 3457899999999999 899976443
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.23 E-value=7.6e-11 Score=94.08 Aligned_cols=100 Identities=14% Similarity=0.267 Sum_probs=78.1
Q ss_pred HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CC-CC
Q 043623 184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SI-PS 252 (359)
Q Consensus 184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~-~~ 252 (359)
++..+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.++. ..+++++.+|... .. +.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 444444 45567999999999999999999999999999999 667766543 4578998888764 12 35
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
||+|++....+ ...++++.+++.|+| ||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 99999976543 235889999999999 8988764
No 76
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.21 E-value=1.7e-10 Score=104.00 Aligned_cols=124 Identities=19% Similarity=0.316 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--CccEEEecchhc-
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--SADAFLFKLIFH- 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--~~D~i~~~~vlh- 263 (359)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. .++++++.+|++++++ .||+|+++-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 446999999999999999999999999999998 777776653 3479999999988543 499999853322
Q ss_pred -----cCChhH------------------HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh
Q 043623 264 -----DYDDEV------------------CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC 320 (359)
Q Consensus 264 -----~~~d~~------------------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
.+..+. ...+++++.+.|+| ||.+++... .
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------~------------------ 219 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------Y------------------ 219 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC------c------------------
Confidence 222111 23688999999999 888776311 0
Q ss_pred cCCcccCHHHHHHHHHhcCCceeeEEecC
Q 043623 321 VPGIERSEKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 321 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
...+++.++|+++||+.+++....
T Consensus 220 -----~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 220 -----DQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred -----cHHHHHHHHHHhCCCCceEEEeCC
Confidence 135678999999999988876653
No 77
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=3.7e-10 Score=103.28 Aligned_cols=136 Identities=15% Similarity=0.304 Sum_probs=99.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--CccEEEecchh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--SADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--~~D~i~~~~vl 262 (359)
..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++ ..++.++.+|++++.+ .||+|+++--.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 677766553 4689999999988544 59999985322
Q ss_pred ------ccCCh------------------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh
Q 043623 263 ------HDYDD------------------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM 318 (359)
Q Consensus 263 ------h~~~d------------------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
+...+ +...++++++.+.|+| ||.+++ +. ..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~------g~--------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI------GY--------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE------Cc---------------
Confidence 11111 1235688999999999 888876 22 00
Q ss_pred hhcCCcccCHHHHHHHHHhcCCceeeEE-ecCCcceEEEEEC
Q 043623 319 TCVPGIERSEKEWERLFFDAGFTSYKIT-PLLGLRSFIEVYL 359 (359)
Q Consensus 319 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~-~~~~~~~~i~~~~ 359 (359)
...+++.+++++.||+.+++. ...+...++.+++
T Consensus 241 -------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 241 -------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred -------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence 024568899999999877664 4456667777654
No 78
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.18 E-value=3.1e-10 Score=95.63 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=97.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCC--CccEEEecchhccC
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDY 265 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~ 265 (359)
.+++.+|||+|||.|.++..|.+. .++++.|+|+ ++.+..+. ...+.++.+|+.+ .+| +||.|+++.+|.++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 467899999999999999888885 6889999999 55454443 4668899999987 355 39999999999888
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh----hhh----------hcCCcccCHHHH
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL----MMT----------CVPGIERSEKEW 331 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~g~~~t~~e~ 331 (359)
.+++ ++|+++.|. |.+.+|.=+... + ......+. |-. ..+=+..|..++
T Consensus 89 ~~P~--~vL~EmlRV------gr~~IVsFPNFg-------~--W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 89 RRPD--EVLEEMLRV------GRRAIVSFPNFG-------H--WRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred hHHH--HHHHHHHHh------cCeEEEEecChH-------H--HHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 7765 568877544 344444322110 0 00111111 110 112345699999
Q ss_pred HHHHHhcCCceeeEEecCC
Q 043623 332 ERLFFDAGFTSYKITPLLG 350 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~~~ 350 (359)
+++.++.|+++.+...+.+
T Consensus 152 e~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 152 EDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHHHCCCEEEEEEEEcC
Confidence 9999999999999888754
No 79
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.17 E-value=7.1e-10 Score=97.26 Aligned_cols=101 Identities=11% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCceEEeCCCCC-CC--
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------------ETDNLKFIAGDMNQ-SI-- 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------------~~~rv~~~~~d~~~-~~-- 250 (359)
.++.+||+.|||.|.-+..|+.+ +.+|+++|+ +.+++.+. ...+|++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 45689999999999999999997 568999999 66666531 15689999999998 42
Q ss_pred ---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 251 ---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 251 ---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
..||+|+-..+|+.++++...++.+.+.+.|+| ||.++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence 249999999999999999999999999999999 999988876443
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.16 E-value=8.6e-10 Score=99.38 Aligned_cols=122 Identities=18% Similarity=0.257 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---C----CCceEEeCCCCCCCCCccEEEecchhcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---T----DNLKFIAGDMNQSIPSADAFLFKLIFHD 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~----~rv~~~~~d~~~~~~~~D~i~~~~vlh~ 264 (359)
.++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++ . +++.+..+|. .||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 46789999999999999987775443 7999999 778877654 1 2333332221 59999876332
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK 344 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 344 (359)
+....+++++.+.|+| ||.+++...... ..+++.+.+++.||++.+
T Consensus 190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ---NPLLELAPDLARLLKP---GGRLILSGILEE----------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHHHHHHHHhcCC---CcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEEE
Confidence 3345789999999999 999988643210 356778999999999998
Q ss_pred EEecCCcceEEE
Q 043623 345 ITPLLGLRSFIE 356 (359)
Q Consensus 345 ~~~~~~~~~~i~ 356 (359)
+.......+++.
T Consensus 236 ~~~~~~W~~~~~ 247 (250)
T PRK00517 236 VLERGEWVALVG 247 (250)
T ss_pred EEEeCCEEEEEE
Confidence 887776655544
No 81
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.15 E-value=8.5e-11 Score=102.44 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCC-CC-C--CC--CccEEEecc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDM-NQ-S--IP--SADAFLFKL 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~-~~-~--~~--~~D~i~~~~ 260 (359)
+..+|||||||+|.++..+++.+|+.+++++|. +++++.+++ ..+++++.+|+ .. + ++ .||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999999 778776653 36799999998 43 3 43 499999875
Q ss_pred hhccCC------hhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 261 IFHDYD------DEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 261 vlh~~~------d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
...... ......+|+++++.|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 442111 11135789999999999 99998854
No 82
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.15 E-value=1.9e-10 Score=96.39 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=89.9
Q ss_pred EEeec-hHHHhcCCC---------CCCceEEeCCCCC-CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCc
Q 043623 222 SVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGRE 288 (359)
Q Consensus 222 ~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG 288 (359)
+++|. ++|++.|++ ..+|+++.+|+.+ |++ .||+|++..++|+++|. .++|++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 47888 788877642 2479999999988 765 39999999999999875 4789999999999 99
Q ss_pred eEEEEeeecCCCCCCchHHHHHHHhhhhhhh---hcC------------CcccCHHHHHHHHHhcCCceeeEEecC-Ccc
Q 043623 289 KVIIVDIVVNEKKDKPEITEAKLLYDALMMT---CVP------------GIERSEKEWERLFFDAGFTSYKITPLL-GLR 352 (359)
Q Consensus 289 ~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~ 352 (359)
.++|.|...++...... ............ ..+ ....+.+++.++|+++||+.++..... +..
T Consensus 76 ~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 76 RVSILDFNKSNQSVTTF--MQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEEEEECCCCChHHHHH--HHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 99999998655321110 000000000000 000 134589999999999999999888775 444
Q ss_pred eEEEEE
Q 043623 353 SFIEVY 358 (359)
Q Consensus 353 ~~i~~~ 358 (359)
.+..+.
T Consensus 154 ~~~~~~ 159 (160)
T PLN02232 154 GNLVAM 159 (160)
T ss_pred HeeEee
Confidence 455443
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=99.15 E-value=1.3e-09 Score=93.59 Aligned_cols=124 Identities=17% Similarity=0.264 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-ceEEeCCCCCCCC--CccEEEecch
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDN-LKFIAGDMNQSIP--SADAFLFKLI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~r-v~~~~~d~~~~~~--~~D~i~~~~v 261 (359)
.++.+|||+|||+|.++..+++. +.+++++|. +++++.+++ .++ +.++.+|+.++++ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999987 578999999 777766642 222 8899999888544 4999998755
Q ss_pred hccCC-------------------hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC
Q 043623 262 FHDYD-------------------DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP 322 (359)
Q Consensus 262 lh~~~-------------------d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (359)
++... ......+++++.+.|+| ||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence 43211 12235689999999999 89887754210
Q ss_pred CcccCHHHHHHHHHhcCCceeeEEecC
Q 043623 323 GIERSEKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 323 g~~~t~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
...+++.++++++||++..+....
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeecc
Confidence 134667889999999988876553
No 84
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.14 E-value=1.4e-09 Score=102.96 Aligned_cols=134 Identities=13% Similarity=0.215 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC---CccEEEecchh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP---SADAFLFKLIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~---~~D~i~~~~vl 262 (359)
++..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+++ ..+ .||+|+++--.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 4457999999999999999999999999999999 888877664 4579999999976 332 49999996422
Q ss_pred ccCCh-----------------------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh
Q 043623 263 HDYDD-----------------------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT 319 (359)
Q Consensus 263 h~~~d-----------------------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
..-.+ +-..++++.+.+.|+| ||.++ +|... .
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEiG~--~------------------- 384 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEHGF--D------------------- 384 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEECc--c-------------------
Confidence 11110 1123677777788888 77654 33311 0
Q ss_pred hcCCcccCHHHHHHHHHhcCCceeeEEec-CCcceEEEEE
Q 043623 320 CVPGIERSEKEWERLFFDAGFTSYKITPL-LGLRSFIEVY 358 (359)
Q Consensus 320 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~ 358 (359)
..+++.+++++.||+.+++..- .+...++.++
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 3567788999999998776554 5667777665
No 85
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=7.2e-10 Score=93.25 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=101.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----C--CCCce-EEeCCCCC-C-CC--CccEEEecch
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----E--TDNLK-FIAGDMNQ-S-IP--SADAFLFKLI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~--~~rv~-~~~~d~~~-~-~~--~~D~i~~~~v 261 (359)
....||+||||||..-...-. .|..++|++|. +.+-+.+. + ..++. |+.++..+ + .+ ++|.|++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 345789999999987554322 37889999998 55654433 2 56676 88888877 4 34 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT 341 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 341 (359)
|+...|+ ++.|+++++.|+| ||+++++|....+....+.+ -....+-.......|-..|.+-| +.|+++-|+
T Consensus 155 LCSve~~--~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~i--~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f~ 226 (252)
T KOG4300|consen 155 LCSVEDP--VKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHLESDGCVLTRDTG-ELLEDAEFS 226 (252)
T ss_pred EeccCCH--HHHHHHHHHhcCC---CcEEEEEecccccchHHHHH--HHHHhchhhheeccceEEehhHH-HHhhhcccc
Confidence 9877664 6889999999999 99999999987665433211 01122221111234555666555 566778899
Q ss_pred eeeEEecCC
Q 043623 342 SYKITPLLG 350 (359)
Q Consensus 342 ~~~~~~~~~ 350 (359)
..+....+.
T Consensus 227 ~~~~kr~~~ 235 (252)
T KOG4300|consen 227 IDSCKRFNF 235 (252)
T ss_pred cchhhcccC
Confidence 888877753
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.10 E-value=1e-09 Score=95.39 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=75.9
Q ss_pred HHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-C
Q 043623 185 IKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-P 251 (359)
Q Consensus 185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-~ 251 (359)
+..+. ..++.+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ .++++++.+|+.+ + . +
T Consensus 33 l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 33 LSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 34444 6678899999999999999998864 6679999999 777776543 3688999999876 2 2 3
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
.||+|++... ......+|+.+.+.|+| ||++++
T Consensus 111 ~~D~V~~~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 111 KFDRIFIGGG-----SEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCCEEEECCC-----cccHHHHHHHHHHHcCC---CcEEEE
Confidence 5999998542 22345789999999999 898876
No 87
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.10 E-value=2.1e-09 Score=98.66 Aligned_cols=131 Identities=13% Similarity=0.243 Sum_probs=94.1
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--CccEEEec------
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--SADAFLFK------ 259 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~~D~i~~~------ 259 (359)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 778776654 3569999999998654 49999986
Q ss_pred -------chhccCCh----------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC
Q 043623 260 -------LIFHDYDD----------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP 322 (359)
Q Consensus 260 -------~vlh~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (359)
.++++-+. +...++++++.+.|+| ||.++ +|....
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~-~e~g~~------------------------ 247 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLV-CEIGNW------------------------ 247 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEE-EEECcc------------------------
Confidence 22322221 1355789999999999 77654 444210
Q ss_pred CcccCHHHHHHHHH-hcCCceeeEEe-cCCcceEEEEE
Q 043623 323 GIERSEKEWERLFF-DAGFTSYKITP-LLGLRSFIEVY 358 (359)
Q Consensus 323 g~~~t~~e~~~ll~-~aGf~~~~~~~-~~~~~~~i~~~ 358 (359)
..+.+.+++. +.||..+++.. ..+...++.++
T Consensus 248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 1344566676 46887666654 35556666554
No 88
>PHA03411 putative methyltransferase; Provisional
Probab=99.10 E-value=1.4e-09 Score=97.22 Aligned_cols=124 Identities=11% Similarity=0.157 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEEecchhccCChhH
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYDDEV 269 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~d~~ 269 (359)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ .++++++.+|+.+ ..+ .||+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 357999999999999999999887789999999 788887765 5689999999998 323 599999988887754332
Q ss_pred H------------------HHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 270 C------------------LKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 270 ~------------------~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
. .+.++.+...|+| +|.++++ .. ..+ +|.. ..+.+++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~---ys---s~~-------~y~~---------sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA---YS---GRP-------YYDG---------TMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE---Ee---ccc-------cccc---------cCCHHHH
Confidence 1 3466777778888 7766655 11 110 1111 1278999
Q ss_pred HHHHHhcCCce
Q 043623 332 ERLFFDAGFTS 342 (359)
Q Consensus 332 ~~ll~~aGf~~ 342 (359)
+++|+++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999975
No 89
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=96.60 Aligned_cols=125 Identities=12% Similarity=0.203 Sum_probs=98.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C--C--CCccEEEe
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S--I--PSADAFLF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~--~--~~~D~i~~ 258 (359)
.+...+|||+|||+|..+..++++.++.+++++|+ +.+.+.|++ .+||+++..|+.+ . . ..||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34578999999999999999999999999999999 667766654 7999999999987 1 2 24999999
Q ss_pred cchhccCChh----------------HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC
Q 043623 259 KLIFHDYDDE----------------VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP 322 (359)
Q Consensus 259 ~~vlh~~~d~----------------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (359)
+=-.+..++. ....+++.+.+.||| ||++.++-.. +
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~-----------e-------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP-----------E-------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH-----------H--------------
Confidence 8655444332 246788999999999 8999876431 1
Q ss_pred CcccCHHHHHHHHHhcCCceeeEEec
Q 043623 323 GIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 323 g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
...||.+++.+.+|...++..+
T Consensus 174 ----rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 ----RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred ----HHHHHHHHHHhcCCCceEEEEe
Confidence 3677888899988888777666
No 90
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=5.8e-10 Score=97.42 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=74.6
Q ss_pred HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC---
Q 043623 184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--- 251 (359)
Q Consensus 184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--- 251 (359)
+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|. +++++.+++ .++++++.+|+.+..+
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344443 45678999999999999999998764 568999999 777766553 3468999999987332
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++...+++++ .++.+.|+| ||++++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 599999998887655 346678999 9998774
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.09 E-value=1.8e-09 Score=94.53 Aligned_cols=105 Identities=12% Similarity=0.223 Sum_probs=78.8
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCCC---------CC-
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQS---------IP- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~---------~~- 251 (359)
++...+. .++++.+|||||||+|.++..+++.. +..+++++|+.++. ...+|+++.+|+.++ .+
T Consensus 41 ~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 41 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3444443 24667899999999999999999986 45799999995532 235699999999872 32
Q ss_pred -CccEEEecchhccCChhH---------HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 252 -SADAFLFKLIFHDYDDEV---------CLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~---------~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.||+|++..++|...++. ...+|+.+.+.|+| ||.+++..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence 499999987766544321 24689999999999 999988654
No 92
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.09 E-value=9.3e-10 Score=92.16 Aligned_cols=100 Identities=22% Similarity=0.268 Sum_probs=81.9
Q ss_pred HHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CCCCcc
Q 043623 185 IKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SIPSAD 254 (359)
Q Consensus 185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~~~~D 254 (359)
+.++. ..++.+++|||||||..+++++...|..+++++|. +++++..+. .++++++.+|.-+ ..+.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 45554 67889999999999999999999999999999998 666655442 7999999999877 344699
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
+|++...- ....+|..+...|+| ||+|++.-.
T Consensus 105 aiFIGGg~------~i~~ile~~~~~l~~---ggrlV~nai 136 (187)
T COG2242 105 AIFIGGGG------NIEEILEAAWERLKP---GGRLVANAI 136 (187)
T ss_pred EEEECCCC------CHHHHHHHHHHHcCc---CCeEEEEee
Confidence 99999862 134789999999999 898887543
No 93
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.08 E-value=3.1e-09 Score=94.53 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=112.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC------CCCccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS------IPSADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~------~~~~D~i 256 (359)
..+.+||||.||+|.+....+..+|. .++...|. |..++..++ .+-++|..+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35689999999999999999999997 68999998 666655443 45569999999982 2358999
Q ss_pred EecchhccCChhHHH-HHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCC-----cccCHHH
Q 043623 257 LFKLIFHDYDDEVCL-KLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG-----IERSEKE 330 (359)
Q Consensus 257 ~~~~vlh~~~d~~~~-~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~t~~e 330 (359)
+.+..+..++|++.+ ..|+.+.+++.| ||.++....-+..... . ....+..+-+| +.|+..|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle-----~----IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLE-----M----IARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchH-----H----HHHHHhcccCCCceEEEecCHHH
Confidence 999999999998755 479999999999 8887765432222211 0 11111111122 4679999
Q ss_pred HHHHHHhcCCceeeEEec-CCcceEEEEEC
Q 043623 331 WERLFFDAGFTSYKITPL-LGLRSFIEVYL 359 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 359 (359)
+.+++++|||+-++..-- -|..+|..|+|
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 999999999996554433 35677776654
No 94
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.05 E-value=7.4e-10 Score=101.13 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=73.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC---CeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEEEecchhccC
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPS---IKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDY 265 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~ 265 (359)
...+|||||||+|.++..+++..|. .+++++|+ +.+++.+++ .+++.+..+|..+ |++ .||+|+.....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 4578999999999999999998774 36899999 788887765 5789999999888 765 49999976431
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
..+++++++|+| ||+++++.+
T Consensus 162 ------~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 162 ------CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred ------CCHHHHHhhccC---CCEEEEEeC
Confidence 236788999999 999998754
No 95
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=1.4e-09 Score=95.41 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=75.6
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---C
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---P 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~ 251 (359)
.++..++ ..++.+|||||||+|.++..+++.. ++.+++++|. +++++.+++ ..+|+++.+|..+.+ .
T Consensus 67 ~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 67 IMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 4455555 6678999999999999999998875 4579999999 778776654 357999999998732 2
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++....++.+ +.+.+.|+| ||++++.
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence 499999987765433 345667999 9998874
No 96
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.04 E-value=5.8e-10 Score=96.59 Aligned_cols=97 Identities=16% Similarity=0.258 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C---CC--CccEEEecc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S---IP--SADAFLFKL 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~---~~--~~D~i~~~~ 260 (359)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.++. ..+|+++.+|+.+ + ++ .+|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 446999999999999999999999999999999 777766543 3589999999975 2 33 388888765
Q ss_pred hhccCChhH-------HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 261 IFHDYDDEV-------CLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 261 vlh~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
.. .|+... ...+++.+.++|+| ||.+++..
T Consensus 96 pd-pw~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PD-PWPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CC-cCCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 43 232211 13689999999999 99987754
No 97
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.04 E-value=1.4e-09 Score=95.49 Aligned_cols=132 Identities=14% Similarity=0.188 Sum_probs=98.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCceEEeCCCCC-CCC
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------------ETDNLKFIAGDMNQ-SIP 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------------~~~rv~~~~~d~~~-~~~ 251 (359)
..+..+||+.|||.|.-+..|+++ +.+|+|+|+ +.+++.+. ...+|++.++|+|+ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456679999999999999999997 568999999 66776541 04678999999999 322
Q ss_pred ---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC-CchHHHHHHHhhhhhhhhcCCcccC
Q 043623 252 ---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD-KPEITEAKLLYDALMMTCVPGIERS 327 (359)
Q Consensus 252 ---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~t 327 (359)
.||+|+=..+|+-++++...++.+.+.+.|+| ||+++++-...+.... .+|+ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 49999999999999999999999999999999 8995554444332211 1211 127
Q ss_pred HHHHHHHHHhcCCceeeEEe
Q 043623 328 EKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 328 ~~e~~~ll~~aGf~~~~~~~ 347 (359)
.+++.++|. .+|++.....
T Consensus 172 ~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEec
Confidence 899999999 7888776653
No 98
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.03 E-value=1.3e-09 Score=99.85 Aligned_cols=96 Identities=16% Similarity=0.377 Sum_probs=74.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--CccEEEecch--
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--SADAFLFKLI-- 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~~D~i~~~~v-- 261 (359)
++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++|+++.+|++++.+ .||+|+++--
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 778777654 3679999999987544 4999998611
Q ss_pred -----------hccCCh----------hHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 262 -----------FHDYDD----------EVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 262 -----------lh~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
+++.+. +....+++.+.+.|+| ||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 111111 1235789999999999 887664
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=5.1e-09 Score=96.90 Aligned_cols=94 Identities=15% Similarity=0.366 Sum_probs=74.2
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--CccEEEecc-----
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--SADAFLFKL----- 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~~D~i~~~~----- 260 (359)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++|+++.+|+++..+ .||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 788877654 3579999999987444 499999861
Q ss_pred --------hhccCCh----------hHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 261 --------IFHDYDD----------EVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 261 --------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
.+++.+. +....+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1121111 2235789999999999 887765
No 100
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.00 E-value=2.3e-09 Score=94.37 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=75.3
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---C
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---P 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~ 251 (359)
.++..+. ..++.+|||||||+|.++..+++..+ +.+++++|. +++++.+++ .++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3444444 56788999999999999999999864 567999998 778777653 367999999998732 2
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++.....+. .+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 59999988765433 3456778999 9998874
No 101
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.99 E-value=7.2e-09 Score=102.30 Aligned_cols=131 Identities=18% Similarity=0.308 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--CccEEEecchh-
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--SADAFLFKLIF- 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~~D~i~~~~vl- 262 (359)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++--.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 778777654 4589999999887443 49999984211
Q ss_pred -------------ccCC------h----hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh
Q 043623 263 -------------HDYD------D----EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT 319 (359)
Q Consensus 263 -------------h~~~------d----~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
.+.+ . +...++++.+.+.|+| ||.+++ |.. ..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig--~~------------------- 272 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIG--FK------------------- 272 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EEC--Cc-------------------
Confidence 1111 0 1234578889999999 887765 421 00
Q ss_pred hcCCcccCHHHHHHHHHhcCCceeeEEe-cCCcceEEE
Q 043623 320 CVPGIERSEKEWERLFFDAGFTSYKITP-LLGLRSFIE 356 (359)
Q Consensus 320 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~ 356 (359)
..+.+.+++++.||+.+++.. ..+...++.
T Consensus 273 -------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~ 303 (506)
T PRK01544 273 -------QEEAVTQIFLDHGYNIESVYKDLQGHSRVIL 303 (506)
T ss_pred -------hHHHHHHHHHhcCCCceEEEecCCCCceEEE
Confidence 355678888889998777655 345555444
No 102
>PRK14967 putative methyltransferase; Provisional
Probab=98.98 E-value=1.2e-08 Score=90.36 Aligned_cols=102 Identities=11% Similarity=0.154 Sum_probs=74.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC--CccEEEecchhc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP--SADAFLFKLIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~--~~D~i~~~~vlh 263 (359)
..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455689999999999999998876 3348999999 677765543 3358889999887433 599999874322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 264 DYDD-------------------EVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 264 ~~~d-------------------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
.-+. .....+++++.+.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 1111 1134688999999999 99998865543
No 103
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.98 E-value=3.8e-09 Score=91.68 Aligned_cols=101 Identities=16% Similarity=0.277 Sum_probs=77.2
Q ss_pred HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CC-CC
Q 043623 184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SI-PS 252 (359)
Q Consensus 184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~-~~ 252 (359)
++..++ ..++.+|||+|||+|.++..+++..|+.+++++|. +++++.+++ .++++++.+|+.+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 444444 56678999999999999999998888899999999 778776653 3579999998865 22 23
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
+|.+++.. . .....+++++.+.|+| ||++++...
T Consensus 110 ~d~v~~~~-----~-~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG-----G-RPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCEEEEEC-----C-cCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 67765532 1 2245789999999999 899888764
No 104
>PRK04457 spermidine synthase; Provisional
Probab=98.97 E-value=1.9e-09 Score=97.64 Aligned_cols=97 Identities=24% Similarity=0.407 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CCC-CccEEEecc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SIP-SADAFLFKL 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~~-~~D~i~~~~ 260 (359)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999999999999999999 888877653 4789999999865 233 499998753
Q ss_pred hhcc--CChh-HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 261 IFHD--YDDE-VCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 261 vlh~--~~d~-~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
++. .+.. ....+++++++.|+| ||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 1211 125899999999999 8888774
No 105
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.96 E-value=9.1e-09 Score=94.63 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-CCCccEEEecchhc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-IPSADAFLFKLIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-~~~~D~i~~~~vlh 263 (359)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .+++.+...+.... ...||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 35689999999999999988875 4458999999 777776654 34566666664332 2359999986543
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
+....++.++.+.|+| ||.+++...
T Consensus 236 ----~~l~~ll~~~~~~Lkp---gG~li~sgi 260 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKP---GGWLILSGI 260 (288)
T ss_pred ----HHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 2345789999999999 999888654
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.94 E-value=4.4e-09 Score=99.02 Aligned_cols=106 Identities=15% Similarity=0.189 Sum_probs=79.1
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CCC-
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SIP- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~~- 251 (359)
.+++.+. ......+||||||+|.++..+++++|+..++|+|+ +.+++.+.. ..+|.++.+|+.. .++
T Consensus 113 ~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 113 NFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence 4455444 33456899999999999999999999999999999 666655532 4689999999853 344
Q ss_pred -CccEEEecchhccCChhH-----HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 252 -SADAFLFKLIFHDYDDEV-----CLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~-----~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
.+|.|++.... .|+... ...+|+.++++|+| ||.+.+..
T Consensus 191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~T 235 (390)
T PRK14121 191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRT 235 (390)
T ss_pred CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEE
Confidence 49999876432 343221 14789999999999 99988754
No 107
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.92 E-value=2.3e-09 Score=84.76 Aligned_cols=95 Identities=13% Similarity=0.295 Sum_probs=74.3
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C--CC--CccEEEecchh
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S--IP--SADAFLFKLIF 262 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~--~~--~~D~i~~~~vl 262 (359)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+.+ . .+ .||+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 777665543 5789999999987 3 33 49999998776
Q ss_pred ccCC------hhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 263 HDYD------DEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 263 h~~~------d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+... .+....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 5432 12346889999999999 89887753
No 108
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.1e-08 Score=90.84 Aligned_cols=127 Identities=13% Similarity=0.228 Sum_probs=90.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCce----EEeCCCCC-CC-CCccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLK----FIAGDMNQ-SI-PSADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~----~~~~d~~~-~~-~~~D~i~~~~v 261 (359)
..++.+|||+|||+|.+++..++.... +++++|+ |.+++.+++ .+.|. ....+..+ +. ..||+|+++=
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI- 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI- 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence 457899999999999999999997553 7999999 777777664 33444 22233333 23 2599998763
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT 341 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 341 (359)
| . +-.+++...+.+.++| ||++++.--. .+ ..+...+.++++||.
T Consensus 238 L---A-~vl~~La~~~~~~lkp---gg~lIlSGIl-~~---------------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 238 L---A-EVLVELAPDIKRLLKP---GGRLILSGIL-ED---------------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred h---H-HHHHHHHHHHHHHcCC---CceEEEEeeh-Hh---------------------------HHHHHHHHHHhCCCe
Confidence 3 2 2356889999999999 8888775421 11 255668888899999
Q ss_pred eeeEEecCCcceEE
Q 043623 342 SYKITPLLGLRSFI 355 (359)
Q Consensus 342 ~~~~~~~~~~~~~i 355 (359)
++++.......+++
T Consensus 283 v~~~~~~~eW~~i~ 296 (300)
T COG2264 283 VVEVLEREEWVAIV 296 (300)
T ss_pred EeEEEecCCEEEEE
Confidence 99988876554443
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.91 E-value=7.3e-09 Score=78.85 Aligned_cols=92 Identities=18% Similarity=0.339 Sum_probs=74.6
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCceEEeCCCCCCC----CCccEEEecchhccC
Q 043623 197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------ETDNLKFIAGDMNQSI----PSADAFLFKLIFHDY 265 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------~~~rv~~~~~d~~~~~----~~~D~i~~~~vlh~~ 265 (359)
+|+|+|||+|.++..+++ .+..+++++|. +..+..++ ...+++++.+|+.+.. +.+|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67789999998 55554443 2577899999998832 249999999999875
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.+....+++.+.+.|+| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 44567899999999999 8888765
No 110
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.90 E-value=4.8e-09 Score=86.57 Aligned_cols=122 Identities=12% Similarity=0.151 Sum_probs=93.9
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-C-C-CccEEEecchhcc
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-I-P-SADAFLFKLIFHD 264 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-~-~-~~D~i~~~~vlh~ 264 (359)
.+|||+|||+|.++..|++..-..+.+++|. +.+++.|+. .+.|+|...|+.+| + + .||+|+-...+.-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999999765556889998 667665542 55699999999994 2 2 4999987766543
Q ss_pred C------ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623 265 Y------DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA 338 (359)
Q Consensus 265 ~------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a 338 (359)
+ ++.....++..+.+.|+| ||.++|.... +|.+|+.+.++.-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEFENF 196 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHHhcC
Confidence 2 222234578889999999 8988886553 1788999999999
Q ss_pred CCceeeEEecC
Q 043623 339 GFTSYKITPLL 349 (359)
Q Consensus 339 Gf~~~~~~~~~ 349 (359)
||.....+|.|
T Consensus 197 ~f~~~~tvp~p 207 (227)
T KOG1271|consen 197 NFEYLSTVPTP 207 (227)
T ss_pred CeEEEEeeccc
Confidence 99988888775
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.89 E-value=1.2e-08 Score=93.14 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=88.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecchh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~vl 262 (359)
..++.+|||||||||-+++..++.... +++++|+ |.+++.+++ .+++.+. ...+ ....||+|+.+=.-
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANILA 235 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES-H
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCCH
Confidence 356689999999999999999987553 7999999 777776664 4566543 1122 22359999876332
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS 342 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 342 (359)
+....++..+.+.|+| ||.+++.-... + ..+++.+.+++ ||++
T Consensus 236 -----~vL~~l~~~~~~~l~~---~G~lIlSGIl~-~---------------------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKP---GGYLILSGILE-E---------------------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp -----HHHHHHHHHCHHHEEE---EEEEEEEEEEG-G---------------------------GHHHHHHHHHT-TEEE
T ss_pred -----HHHHHHHHHHHHhhCC---CCEEEEccccH-H---------------------------HHHHHHHHHHC-CCEE
Confidence 4456788899999999 78777754432 1 25566778877 9999
Q ss_pred eeEEecCCcceEEEEE
Q 043623 343 YKITPLLGLRSFIEVY 358 (359)
Q Consensus 343 ~~~~~~~~~~~~i~~~ 358 (359)
.+.....+..+++.-+
T Consensus 279 ~~~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 279 VEEREEGEWVALVFKK 294 (295)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEEEECCEEEEEEEe
Confidence 8888777665555443
No 112
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.89 E-value=2.4e-08 Score=85.98 Aligned_cols=95 Identities=14% Similarity=0.305 Sum_probs=71.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCC-C--------CC--CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-S--------IP--SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~--------~~--~~D~i~~~ 259 (359)
..++.+|||+|||+|.++..+++.+ +..+++++|+.+.. ...+++++.+|+.+ + .+ .||+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4678899999999999999999887 56789999995432 24678899899876 2 23 49999986
Q ss_pred chhc---cCC------hhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 260 LIFH---DYD------DEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 260 ~vlh---~~~------d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
...| .|. .+...++|+.+.+.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 4332 111 11235789999999999 8998875
No 113
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=5.2e-08 Score=88.94 Aligned_cols=129 Identities=18% Similarity=0.291 Sum_probs=91.5
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-CccEEEecc--hhcc--
Q 043623 197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-SADAFLFKL--IFHD-- 264 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-~~D~i~~~~--vlh~-- 264 (359)
+|||+|||||..++.++++.|++++++.|+ +.+++.|++ ..++.++.+|.+++.+ .||+|+++= +-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888877654 2566777779898665 599999873 2221
Q ss_pred -CC------------------hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcc
Q 043623 265 -YD------------------DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIE 325 (359)
Q Consensus 265 -~~------------------d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 325 (359)
.. -+...+++..+.+.|+| || +++++....
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g-~l~le~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GG-VLILEIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---Cc-EEEEEECCC---------------------------
Confidence 00 12345677888888888 45 444444211
Q ss_pred cCHHHHHHHHHhcC-CceeeEEec-CCcceEEEE
Q 043623 326 RSEKEWERLFFDAG-FTSYKITPL-LGLRSFIEV 357 (359)
Q Consensus 326 ~t~~e~~~ll~~aG-f~~~~~~~~-~~~~~~i~~ 357 (359)
..+.+.++|.+.| |..+++..- .+...++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 3667789999999 666666554 344444444
No 114
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.86 E-value=7.7e-08 Score=81.99 Aligned_cols=156 Identities=13% Similarity=0.201 Sum_probs=94.3
Q ss_pred hHhhhhChHHHHHHHHHhhcC-ccch----HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHh
Q 043623 157 WGYAEQNHEFNNLFNQGLASD-SQMA----KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIA 231 (359)
Q Consensus 157 ~~~~~~~~~~~~~f~~~~~~~-~~~~----~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~ 231 (359)
++.+.++|+....|+++++.. ..+. ..+++.+. ..++...|.|+|||.+.++..+.. ..++.-+|+-..
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S--
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--
Confidence 445567777777777766642 2232 55666554 134557999999999999976542 347888887221
Q ss_pred cCCCCCCceEEeCCCCC-CCCC--ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH
Q 043623 232 DLPETDNLKFIAGDMNQ-SIPS--ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE 308 (359)
Q Consensus 232 ~a~~~~rv~~~~~d~~~-~~~~--~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 308 (359)
.+ .+++.|+.. |.++ .|+++++-.|-.-+ ...+|+++.|.||| ||.+.|.|..-.
T Consensus 105 ----n~--~Vtacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~---~G~L~IAEV~SR---------- 162 (219)
T PF05148_consen 105 ----NP--RVTACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKP---GGILKIAEVKSR---------- 162 (219)
T ss_dssp ----ST--TEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGGG----------
T ss_pred ----CC--CEEEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheecc---CcEEEEEEeccc----------
Confidence 12 467799977 8774 99999998884322 35789999999999 999999987411
Q ss_pred HHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEE
Q 043623 309 AKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIE 356 (359)
Q Consensus 309 ~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~ 356 (359)
.-+.+++.+.++..||+....-.......+.+
T Consensus 163 ----------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~ 194 (219)
T PF05148_consen 163 ----------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFE 194 (219)
T ss_dssp -----------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEE
T ss_pred ----------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEE
Confidence 01567788899999999877543333334443
No 115
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.86 E-value=4.7e-08 Score=88.00 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=86.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCCCC-----CCccEEEecchhc--
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQSI-----PSADAFLFKLIFH-- 263 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~~~-----~~~D~i~~~~vlh-- 263 (359)
..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|+++.. +.||+|+++--..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 788877764 234688999988732 2499999874221
Q ss_pred ----cCChh------------------HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhc
Q 043623 264 ----DYDDE------------------VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCV 321 (359)
Q Consensus 264 ----~~~d~------------------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (359)
..+++ ...++++.+.+.|+| ||++++. ... +
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~-~~~-~---------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE-TSE-R---------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE-ECc-c----------------------
Confidence 11111 124788888999999 8887754 210 0
Q ss_pred CCcccCHHHHHHHHHhcCCceeeEE
Q 043623 322 PGIERSEKEWERLFFDAGFTSYKIT 346 (359)
Q Consensus 322 ~g~~~t~~e~~~ll~~aGf~~~~~~ 346 (359)
..+++.+++++.||+..-..
T Consensus 220 -----~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 220 -----QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred -----hHHHHHHHHHHCCCCceeeE
Confidence 24456778888998854443
No 116
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=87.64 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=95.8
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------------
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------------------------- 235 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------------------------- 235 (359)
+..++.++..+-.+..+|||||.+|.++..+++.+-...+.|+|+ +..|..|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 344554443355678999999999999999999998889999999 566666552
Q ss_pred ----------------CCCceE-------EeCCCCC-CCCCccEEEecchh---c-cCChhHHHHHHHHHHHhcCCCCCC
Q 043623 236 ----------------TDNLKF-------IAGDMNQ-SIPSADAFLFKLIF---H-DYDDEVCLKLLKNCREAVASSDGR 287 (359)
Q Consensus 236 ----------------~~rv~~-------~~~d~~~-~~~~~D~i~~~~vl---h-~~~d~~~~~iL~~~~~~L~p~~~g 287 (359)
.+++.| ..-||.+ ..+.||+|++-.+- | +|.|+-..++|+++++.|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 012222 2233443 34469999776542 3 58899999999999999999 6
Q ss_pred ceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc--CCceee
Q 043623 288 EKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA--GFTSYK 344 (359)
Q Consensus 288 G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a--Gf~~~~ 344 (359)
| ++|+|+- +... +...+.... ......--....++....++.+. ||+.++
T Consensus 203 G-iLvvEPQ----pWks-Y~kaar~~e-~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 203 G-ILVVEPQ----PWKS-YKKAARRSE-KLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred c-EEEEcCC----chHH-HHHHHHHHH-HhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 6 5555542 2111 111110000 00000112234788899999887 555443
No 117
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.84 E-value=2.7e-08 Score=93.35 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=87.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~v 261 (359)
.+++.+|||+|||+|.++.+.+.. +.+++++|+ +.+++.++. ..++.+..+|+.+ +.+ .||+|++.--
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567789999999999999887664 578999999 777775543 2348899999998 653 4999999632
Q ss_pred hcc-------CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHH
Q 043623 262 FHD-------YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERL 334 (359)
Q Consensus 262 lh~-------~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~l 334 (359)
... ...+...++|+.+++.|+| ||++++.-+. ..+|.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~-------------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT-------------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC-------------------------------CCCHHHH
Confidence 211 1112246899999999999 9998876431 1234567
Q ss_pred HHhcCCceeeEEec
Q 043623 335 FFDAGFTSYKITPL 348 (359)
Q Consensus 335 l~~aGf~~~~~~~~ 348 (359)
++++|| +......
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 888999 7776664
No 118
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.80 E-value=3.5e-08 Score=86.71 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=69.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---CCccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---PSADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~~~D~i~~~~v 261 (359)
..+..+|||||||+|.++..+++... +++++|. +++++.+++ ..+++++.+|..+.+ ..||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 56778999999999999988877653 7999998 777766553 346999999987743 24999999876
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
++++ .+.+.+.|+| ||++++.-
T Consensus 154 ~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 154 APEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred chhh--------hHHHHHhcCC---CcEEEEEE
Confidence 6544 3456788999 89888753
No 119
>PRK01581 speE spermidine synthase; Validated
Probab=98.79 E-value=8.1e-08 Score=89.36 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCceEEeCCCCC---CCC-Ccc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------------TDNLKFIAGDMNQ---SIP-SAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------------~~rv~~~~~d~~~---~~~-~~D 254 (359)
..+.+||+||||+|..+..+++..+..+++++|+ +++++.|+. .+|++++.+|..+ ..+ .||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4568999999999999999998656679999999 778876662 5799999999886 222 499
Q ss_pred EEEecchhc---cCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 255 AFLFKLIFH---DYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 255 ~i~~~~vlh---~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
+|++...-. .....-...+++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999873210 01112235689999999999 8877665
No 120
>PRK00811 spermidine synthase; Provisional
Probab=98.78 E-value=2.5e-08 Score=91.35 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCC--C--CCCccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQ--S--IPSADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~--~--~~~~D~i 256 (359)
+.+.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999998655568999999 778776653 4689999999876 2 2249999
Q ss_pred EecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEE
Q 043623 257 LFKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 257 ~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli 292 (359)
++...-+.-+... ...+++.+++.|+| ||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 9865433222211 25789999999999 887765
No 121
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.74 E-value=4.6e-09 Score=69.15 Aligned_cols=49 Identities=55% Similarity=0.888 Sum_probs=42.6
Q ss_pred HHHHHHHHcCcccccccCC-CCCCHHHHHhhcC-CCCCCcchHHHHHHHHh
Q 043623 30 IFLKCAVELGIPDIIHKRG-RPVTLPELVSALE-FQPNKRNCLRRIMRLLD 78 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~-~~~t~~~LA~~~~-~~~~~~~~l~~~L~~L~ 78 (359)
++|++|++|||||.|.++| +|.|.+||++++. .+|.++..++|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999998876 8999999999999 77767889999999985
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.71 E-value=5.8e-08 Score=90.11 Aligned_cols=97 Identities=18% Similarity=0.250 Sum_probs=72.6
Q ss_pred HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---CC
Q 043623 184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---PS 252 (359)
Q Consensus 184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~~ 252 (359)
+++.++ .+++.+|||||||+|.++..+++..+. .+++++|. +++++.+++ .+++.++.+|..+.. ..
T Consensus 72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 344444 566789999999999999999998764 47999998 777766543 467999999987632 35
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
||+|++...+++.+ ..+.+.|+| ||++++.
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~Lkp---gG~Lvv~ 179 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVP 179 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCC---CCEEEEE
Confidence 99999986654432 335678999 8998874
No 123
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.69 E-value=3.9e-08 Score=84.26 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=95.0
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCC---CCceE-EeCCCCC--CCCCccE
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPET---DNLKF-IAGDMNQ--SIPSADA 255 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~---~rv~~-~~~d~~~--~~~~~D~ 255 (359)
+.+...+ ..+..++||+|||||..+..+...-. +.+++|+ ..|++.+.+. +.... -..+|.. ....||+
T Consensus 116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHhcc--CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 3344444 34578999999999999888766532 5789999 6799888752 11111 1112443 2224999
Q ss_pred EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHH
Q 043623 256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLF 335 (359)
Q Consensus 256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll 335 (359)
|....||-++.+-+ .++..+...|+| ||.+...-...++..... ......+ ..+..-+.+++
T Consensus 192 i~AaDVl~YlG~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f~-l~ps~Ry------------AH~~~YVr~~l 253 (287)
T COG4976 192 IVAADVLPYLGALE--GLFAGAAGLLAP---GGLFAFSVETLPDDGGFV-LGPSQRY------------AHSESYVRALL 253 (287)
T ss_pred hhhhhHHHhhcchh--hHHHHHHHhcCC---CceEEEEecccCCCCCee-cchhhhh------------ccchHHHHHHH
Confidence 99999998888754 679999999999 887766544444332211 0000000 01456678999
Q ss_pred HhcCCceeeEEec
Q 043623 336 FDAGFTSYKITPL 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
+..||.++++.++
T Consensus 254 ~~~Gl~~i~~~~t 266 (287)
T COG4976 254 AASGLEVIAIEDT 266 (287)
T ss_pred HhcCceEEEeecc
Confidence 9999999999765
No 124
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.69 E-value=6.3e-08 Score=81.95 Aligned_cols=88 Identities=23% Similarity=0.438 Sum_probs=63.7
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC--cc
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS--AD 254 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~--~D 254 (359)
.+++.++ ..++.+|||||||+|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ +.++ +|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 4555555 566789999999999999999997 468999999 667666543 4689999999998 5553 88
Q ss_pred EEEecchhccCChhHHHHHHH
Q 043623 255 AFLFKLIFHDYDDEVCLKLLK 275 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~ 275 (359)
.|+++ ..++...+...++++
T Consensus 80 ~vi~n-~Py~~~~~~i~~~l~ 99 (169)
T smart00650 80 KVVGN-LPYNISTPILFKLLE 99 (169)
T ss_pred EEEEC-CCcccHHHHHHHHHh
Confidence 88765 444444443333433
No 125
>PRK03612 spermidine synthase; Provisional
Probab=98.67 E-value=1.3e-07 Score=93.85 Aligned_cols=97 Identities=12% Similarity=0.217 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCceEEeCCCCC---CCC-Cc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-------------TDNLKFIAGDMNQ---SIP-SA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-------------~~rv~~~~~d~~~---~~~-~~ 253 (359)
+++++|||||||+|..+.++++. |. .+++++|+ +++++.+++ .+|++++.+|..+ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45789999999999999999974 55 69999999 788887654 3689999999876 223 59
Q ss_pred cEEEecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 254 DAFLFKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 254 D~i~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
|+|++...-...+.. -..++++.+++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999997432211111 123689999999999 8887764
No 126
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.67 E-value=5.1e-08 Score=84.03 Aligned_cols=98 Identities=11% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCchH--HHH--HHHHH----CC-CCeEEEeec-hHHHhcCCC----------------------------
Q 043623 194 GLSSLVEVGGGTGS--FAR--IISEA----FP-SIKCSVLEL-PHVIADLPE---------------------------- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~--~~~--~l~~~----~p-~~~~~~~D~-~~~i~~a~~---------------------------- 235 (359)
+..+|.-+||+||. ++. .+.+. .+ +.++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999994 333 33331 12 468999999 677776652
Q ss_pred ------CCCceEEeCCCCC-CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 236 ------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 236 ------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
..+|+|...|..+ +.+ .||+|+|.+||-+++++...+++++++++|+| ||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEec
Confidence 3679999999998 322 49999999999999999999999999999999 88888743
No 127
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2.1e-07 Score=81.56 Aligned_cols=104 Identities=18% Similarity=0.303 Sum_probs=84.4
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-CC-
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISE-AFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-IP- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-~~- 251 (359)
.|+.... +.++.+|+|.|.|+|.++..|+. ..|..+++.+|. ++..+.|++ .++|++..+|+.+. .+
T Consensus 85 ~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 85 YIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 4566665 88999999999999999999997 568789999998 666665553 67799999999983 33
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
.||++++- ++++. .+|.+++++|+| ||.+++.-++.+
T Consensus 163 ~vDav~LD-----mp~PW--~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 163 DVDAVFLD-----LPDPW--NVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred ccCEEEEc-----CCChH--HHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 59999874 67664 779999999999 999999877643
No 128
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.67 E-value=7.4e-07 Score=77.80 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=105.1
Q ss_pred hHhhhhChHHHHHHHHHhhcC-ccch----HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHh
Q 043623 157 WGYAEQNHEFNNLFNQGLASD-SQMA----KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIA 231 (359)
Q Consensus 157 ~~~~~~~~~~~~~f~~~~~~~-~~~~----~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~ 231 (359)
+..+..+|+....|+++++.. ..+. ..|++.+. ..+....|.|+|||.+.++.. -.-++.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhc-----cccceeeeeeec---
Confidence 445567777777777776642 2222 56666655 134567899999999998872 122678888632
Q ss_pred cCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH
Q 043623 232 DLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE 308 (359)
Q Consensus 232 ~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 308 (359)
.+-+++..||.+ |.+ +.|+++++-.|---+ ...+++++++.|+| ||.++|.|..- ..
T Consensus 210 -----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn---~~df~kEa~RiLk~---gG~l~IAEv~S----Rf----- 269 (325)
T KOG3045|consen 210 -----VNERVIACDMRNVPLEDESVDVAVFCLSLMGTN---LADFIKEANRILKP---GGLLYIAEVKS----RF----- 269 (325)
T ss_pred -----CCCceeeccccCCcCccCcccEEEeeHhhhccc---HHHHHHHHHHHhcc---CceEEEEehhh----hc-----
Confidence 233457789988 766 399999887773322 45789999999999 99999988631 11
Q ss_pred HHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623 309 AKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358 (359)
Q Consensus 309 ~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 358 (359)
-+...+.+.|...||.+..+.-...+..+.+.+
T Consensus 270 -----------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefk 302 (325)
T KOG3045|consen 270 -----------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFK 302 (325)
T ss_pred -----------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEe
Confidence 145557888999999876665444444555443
No 129
>PLN02366 spermidine synthase
Probab=98.66 E-value=1.1e-07 Score=87.89 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CC--CCccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SI--PSADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~--~~~D~i 256 (359)
+++++||+||||.|..+..+++..+-.+++.+|+ +.+++.+++ .+|++++.+|..+ .. ..||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999999999999987633458999999 667776653 4699999999754 23 249999
Q ss_pred EecchhccCChh--HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 257 LFKLIFHDYDDE--VCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 257 ~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
++-..-+.-+.. -...+++.+++.|+| ||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence 985433221211 134789999999999 8877653
No 130
>PLN02672 methionine S-methyltransferase
Probab=98.66 E-value=2.8e-07 Score=97.01 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=54.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCceEEeCCCCCCCC
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------------------TDNLKFIAGDMNQSIP 251 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------------------~~rv~~~~~d~~~~~~ 251 (359)
+.+|||+|||+|.+++.+++.+|+.+++++|+ +.+++.++. .+||+++.+|++++.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 777765532 2479999999998443
Q ss_pred ----CccEEEec
Q 043623 252 ----SADAFLFK 259 (359)
Q Consensus 252 ----~~D~i~~~ 259 (359)
.||+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 49999886
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.64 E-value=1e-07 Score=86.85 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---C-CCCccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---S-IPSADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~-~~~~D~i~ 257 (359)
+.+.+||+||||+|..+..+++..+..+++++|+ +++++.+++ .++++++.+|..+ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3457999999999999999998766678999999 677665543 3688898888765 1 22599999
Q ss_pred ecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEEE
Q 043623 258 FKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 258 ~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
+...-..-+... ..++++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 876532222222 35789999999999 8888775
No 132
>PHA03412 putative methyltransferase; Provisional
Probab=98.62 E-value=2.2e-07 Score=81.50 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=69.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEEecchhccCC-
Q 043623 195 LSSLVEVGGGTGSFARIISEAF---PSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYD- 266 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~- 266 (359)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.++. ..++.++.+|+.. +.. .||+|+++=-++...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 778888775 4678999999987 444 599999986555322
Q ss_pred -h--------hHHHHHHHHHHHhcCC
Q 043623 267 -D--------EVCLKLLKNCREAVAS 283 (359)
Q Consensus 267 -d--------~~~~~iL~~~~~~L~p 283 (359)
+ .-...+++++.+++++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~ 155 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ 155 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC
Confidence 1 2234588999987777
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3e-07 Score=78.89 Aligned_cols=98 Identities=12% Similarity=0.205 Sum_probs=75.9
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC---C
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP---S 252 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~---~ 252 (359)
.++..+. .+++.+|||||||+|+.+.-|++.-- +++.+|. ++..+.|++ ..+|.++.+|-...++ +
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 4455555 78889999999999999999998754 8888898 666666653 5569999999998554 4
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
||.|+.....-..|+ .+.+.|+| ||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~--------~Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE--------ALLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH--------HHHHhccc---CCEEEEEEc
Confidence 999999987755554 24456899 999988655
No 134
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.60 E-value=6.9e-08 Score=84.13 Aligned_cols=99 Identities=15% Similarity=0.300 Sum_probs=71.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-- 251 (359)
..++..+. +.++.+|||||||+|+++.-+++.. +..+++.+|. +..++.|++ ..+|+++.+|....++
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 34555665 7889999999999999999999874 4457899998 777776664 5689999999887544
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.||.|++.......+. .+.+.|++ ||++++-
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~p 171 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAP 171 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEE
Confidence 4999999987754433 24556899 8988874
No 135
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.59 E-value=2.4e-07 Score=82.52 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=74.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-------CCCc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-------IPSA 253 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-------~~~~ 253 (359)
..++++|||||||+|.-+..++...| +.+++.+|. ++.++.|++ .++|+++.+|..+ + .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44678999999999999999998765 679999999 677766653 5789999999976 1 1359
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
|+|++-. ..+.-..++..+.+.|+| ||.|++-+..+
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKV---GGIIAFDNTLW 181 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CeEEEEEcCCc
Confidence 9998753 223345789999999999 77655544433
No 136
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.57 E-value=2.4e-07 Score=84.43 Aligned_cols=97 Identities=10% Similarity=0.165 Sum_probs=76.2
Q ss_pred CCeEEEEcCCchH--H--HHHHHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 043623 195 LSSLVEVGGGTGS--F--ARIISEAFP----SIKCSVLEL-PHVIADLPE------------------------------ 235 (359)
Q Consensus 195 ~~~vlDvG~G~G~--~--~~~l~~~~p----~~~~~~~D~-~~~i~~a~~------------------------------ 235 (359)
..+|...||+||. + ++.+.+..+ ++++++.|+ +.+++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999994 3 333444332 468999999 677765542
Q ss_pred -------CCCceEEeCCCCC-CCC---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 236 -------TDNLKFIAGDMNQ-SIP---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 236 -------~~rv~~~~~d~~~-~~~---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
..+|+|..+|..+ ++| .||+|+|.++|.+++++...++++++.++|+| ||.|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence 2567899999988 543 49999999999999999899999999999999 89877643
No 137
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.55 E-value=9.1e-07 Score=79.61 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCch----HHHHHHHHHCC-----CCeEEEeec-hHHHhcCCC----------------------------
Q 043623 194 GLSSLVEVGGGTG----SFARIISEAFP-----SIKCSVLEL-PHVIADLPE---------------------------- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~i~~a~~---------------------------- 235 (359)
+.-+|.-+||+|| .+++.+.+.+| .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4789999999999 45566677775 478999999 677776652
Q ss_pred -------CCCceEEeCCCCC-C-CCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 236 -------TDNLKFIAGDMNQ-S-IPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 236 -------~~rv~~~~~d~~~-~-~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
...|.|..+|..+ + .++ ||+|+|.+||-.++.+.-.+++.+.+..|+| ||.|+|-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEcc
Confidence 3468999999998 4 444 9999999999999988888999999999999 89888843
No 138
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.54 E-value=2e-07 Score=86.79 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCceEEeCCCCCC-----C-
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------------TDNLKFIAGDMNQS-----I- 250 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------------~~rv~~~~~d~~~~-----~- 250 (359)
+..+|||+|||.|+-+....+..+. .++|+|+ +..++.|++ .-...++.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~-~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK-HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC-EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6789999999999998888886443 7999999 566666542 12346788887751 1
Q ss_pred -C--CccEEEecchhccC--ChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 251 -P--SADAFLFKLIFHDY--DDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 251 -~--~~D~i~~~~vlh~~--~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
+ .||+|-+...||+. +.+.+..+|+++.+.|+| ||.++..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT 185 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGT 185 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 2 49999999999984 566677799999999999 8888765
No 139
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.53 E-value=4.6e-07 Score=80.78 Aligned_cols=141 Identities=18% Similarity=0.303 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCch--HHHHHHHH-HCCCCeEEEeec-hHHHhcCCC----CCC--ceEEeCCCCCC-----CC-------
Q 043623 194 GLSSLVEVGGGTG--SFARIISE-AFPSIKCSVLEL-PHVIADLPE----TDN--LKFIAGDMNQS-----IP------- 251 (359)
Q Consensus 194 ~~~~vlDvG~G~G--~~~~~l~~-~~p~~~~~~~D~-~~~i~~a~~----~~r--v~~~~~d~~~~-----~~------- 251 (359)
+..+.||||||-= ...-++++ ..|+.+++.+|. |-++..++. .++ ..++.+|+.++ .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 6789999999943 44555544 579999999999 777777664 444 88999999983 11
Q ss_pred --CccEEEecchhccCCh-hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCH
Q 043623 252 --SADAFLFKLIFHDYDD-EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSE 328 (359)
Q Consensus 252 --~~D~i~~~~vlh~~~d-~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
..=++++..+||+.+| ++...+++.++++|.| |+.|+|.....+.... ........+.........||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~-----~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPE-----RAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHH-----HHHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHH-----HHHHHHHHHHcCCCCceecCH
Confidence 1347899999999987 6788999999999999 8888888776543211 111222333222345778999
Q ss_pred HHHHHHHHhcCCceee
Q 043623 329 KEWERLFFDAGFTSYK 344 (359)
Q Consensus 329 ~e~~~ll~~aGf~~~~ 344 (359)
+|+.++|. ||..++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999998 777654
No 140
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=4.2e-07 Score=88.31 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=77.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C--CC--CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S--IP--SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~--~~--~~D~i~~~~ 260 (359)
..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++ .-+++++.+|+.+ + .+ .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45678999999999999999999988789999999 777776653 3347889999986 2 22 499998432
Q ss_pred ------hhcc-------CChhH-------HHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 261 ------IFHD-------YDDEV-------CLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 261 ------vlh~-------~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
++.. ...++ -.++|.++.+.|+| ||++++.......
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~~ 377 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSILP 377 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 1211 12221 13689999999999 9998877654433
No 141
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.52 E-value=2.9e-07 Score=79.77 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeC--CCC-----CCC--C-CccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAG--DMN-----QSI--P-SADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~--d~~-----~~~--~-~~D~i~~~~vl 262 (359)
....++|||||+|.-++.++..+. ++++.|. +.+++.+++..++++... .|. +-. + +.|+|++..++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 334899999999977777777654 6999999 889999988666554221 222 211 2 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
|-++.+ ++.+.++++||+ +||.+.|....
T Consensus 111 HWFdle---~fy~~~~rvLRk--~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWFDLE---RFYKEAYRVLRK--DGGLIAVWNYN 139 (261)
T ss_pred HhhchH---HHHHHHHHHcCC--CCCEEEEEEcc
Confidence 877664 679999999998 26666665544
No 142
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.50 E-value=9e-07 Score=78.82 Aligned_cols=126 Identities=15% Similarity=0.244 Sum_probs=89.2
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISE-AFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~- 251 (359)
.|+..++ +.++.+|||.|.|+|.++..|++ -.|..++.-+|. ++..+.|++ .++|++...|+.+ .++
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4555666 88999999999999999999997 468889999998 666655553 6789999999975 332
Q ss_pred ----CccEEEecchhccCChhHHHHHHHHHHHhc-CCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623 252 ----SADAFLFKLIFHDYDDEVCLKLLKNCREAV-ASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER 326 (359)
Q Consensus 252 ----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L-~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
.+|+|++- ++++. ..+..+.++| +| ||++++.-++...
T Consensus 109 ~~~~~~DavfLD-----lp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~ieQ--------------------------- 151 (247)
T PF08704_consen 109 ELESDFDAVFLD-----LPDPW--EAIPHAKRALKKP---GGRICCFSPCIEQ--------------------------- 151 (247)
T ss_dssp T-TTSEEEEEEE-----SSSGG--GGHHHHHHHE-EE---EEEEEEEESSHHH---------------------------
T ss_pred cccCcccEEEEe-----CCCHH--HHHHHHHHHHhcC---CceEEEECCCHHH---------------------------
Confidence 48998874 66664 5699999999 88 9999988765321
Q ss_pred CHHHHHHHHHhcCCceeeEEec
Q 043623 327 SEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 327 t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
.....+.|++.||..+++..+
T Consensus 152 -v~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 152 -VQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp -HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHHHCCCeeeEEEEE
Confidence 233355667788888776543
No 143
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.50 E-value=9.2e-07 Score=86.40 Aligned_cols=105 Identities=13% Similarity=0.216 Sum_probs=76.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-CCccEEEec--
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-PSADAFLFK-- 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-~~~D~i~~~-- 259 (359)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|+.+ +. ..||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44668999999999999999988654 458999999 777766653 3578999999987 32 249999862
Q ss_pred ----chh-------ccCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 260 ----LIF-------HDYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 260 ----~vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
.++ +.++.++. .++|.++.+.|+| ||+++........
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~~ 382 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIEP 382 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 122 12333322 2689999999999 8988887665543
No 144
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.50 E-value=9.8e-07 Score=81.65 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=89.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeC----CCCCCC--C--CccEE
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAG----DMNQSI--P--SADAF 256 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~----d~~~~~--~--~~D~i 256 (359)
...++||||||+|.....++.+.++++++++|+ +.+++.|+. .++|++... +++... + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999999998889999999999 777777663 356777542 333321 2 49999
Q ss_pred EecchhccCChhH---HHHHHHHHH----------------HhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh
Q 043623 257 LFKLIFHDYDDEV---CLKLLKNCR----------------EAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM 317 (359)
Q Consensus 257 ~~~~vlh~~~d~~---~~~iL~~~~----------------~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
+++=-+|.-..+. ...-.+++. +.+.+ ||.+-++..+..+.. .. .-....
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~------~~--~~~~gw 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESK------AF--AKQVLW 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHH------HH--HhhCcE
Confidence 9998776544332 111222222 12223 454433333322210 00 000011
Q ss_pred hhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 318 MTCVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 318 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
.+.+=|+.-+.+.+.+.|++.|.+.++++.+
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1112356669999999999999998888887
No 145
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.50 E-value=1.2e-06 Score=77.20 Aligned_cols=142 Identities=20% Similarity=0.236 Sum_probs=90.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCC-CccEEEecchhccCChhHHH
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIP-SADAFLFKLIFHDYDDEVCL 271 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~-~~D~i~~~~vlh~~~d~~~~ 271 (359)
...++||||.|-|..+..++..+.+ +.+-+. +.|..+.++ ...+++..+-....+ .||+|.|.|+|....++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4578999999999999999998876 555566 667666553 444444443333222 49999999999666655 4
Q ss_pred HHHHHHHHhcCCCCCCceEEEEee-----ecCCCCCCchHHHHHHHhhhhhhhhcC-CcccCHHHHHHHHHhcCCceeeE
Q 043623 272 KLLKNCREAVASSDGREKVIIVDI-----VVNEKKDKPEITEAKLLYDALMMTCVP-GIERSEKEWERLFFDAGFTSYKI 345 (359)
Q Consensus 272 ~iL~~~~~~L~p~~~gG~lli~e~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~t~~e~~~ll~~aGf~~~~~ 345 (359)
.+|+.++++|+| +|++++.=. ...........+.. ..+ ..| .-+-....+.++|+.+||++.+.
T Consensus 169 ~LL~~i~~~l~p---~G~lilAvVlP~~pyVE~~~g~~~~P~e--~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~ 238 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILAVVLPFRPYVEFGGGKSNRPSE--LLP-----VKGATFEEQVSSLVNVFEPAGFEVERW 238 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEEEEecccccEEcCCCCCCCchh--hcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 789999999999 898876421 11111100000000 010 111 11112344558999999999999
Q ss_pred EecCC
Q 043623 346 TPLLG 350 (359)
Q Consensus 346 ~~~~~ 350 (359)
...|.
T Consensus 239 tr~PY 243 (265)
T PF05219_consen 239 TRLPY 243 (265)
T ss_pred eccCc
Confidence 88763
No 146
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.49 E-value=5.6e-07 Score=87.43 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=77.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CC----CCccEEEe
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SI----PSADAFLF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~----~~~D~i~~ 258 (359)
..++.+|||+|||+|..+..+++..++.+++++|. +..++.+++ ..++.++.+|... +. ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 45678999999999999999999888789999999 677765543 1134446677665 22 24999985
Q ss_pred c------chhccCCh-------hH-------HHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 259 K------LIFHDYDD-------EV-------CLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 259 ~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
. .+++..++ ++ -.++|.++.+.||| ||++++........
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~~ 374 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLPE 374 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChh
Confidence 2 45655443 11 24789999999999 99999887766544
No 147
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=7.9e-07 Score=86.89 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=75.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~ 259 (359)
..++.+|||+|||+|..+..+++.. ++.+++++|+ +.+++.+++ ..+|+++.+|+.+ . ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4567899999999999999999986 6789999999 677665543 2458999999876 2 33 59999874
Q ss_pred ch------hcc-------CChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 260 LI------FHD-------YDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 260 ~v------lh~-------~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
-- +.+ ++..+. .++|+.+.+.|+| ||+++......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 21 111 111111 3689999999999 89987654443
No 148
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.42 E-value=1e-06 Score=79.81 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=61.9
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCCccE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPSADA 255 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~~D~ 255 (359)
..+++..+ ..++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 34555554 5667899999999999999999983 48999999 667665543 4689999999998 7778998
Q ss_pred EEecchhccCCh
Q 043623 256 FLFKLIFHDYDD 267 (359)
Q Consensus 256 i~~~~vlh~~~d 267 (359)
|+++-- ++.+.
T Consensus 95 Vv~NlP-y~i~s 105 (258)
T PRK14896 95 VVSNLP-YQISS 105 (258)
T ss_pred EEEcCC-cccCc
Confidence 777544 44543
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.41 E-value=7.9e-07 Score=76.84 Aligned_cols=94 Identities=18% Similarity=0.347 Sum_probs=67.0
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCceEEeCCCCC--C--CC--CccEEEecchhc
Q 043623 197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------ETDNLKFIAGDMNQ--S--IP--SADAFLFKLIFH 263 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------~~~rv~~~~~d~~~--~--~~--~~D~i~~~~vlh 263 (359)
.+||||||.|.++..+++.+|+..++|+|+ ...+..+. ...|+.++.+|+.. . ++ +.|-|++.+- -
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 899999999999999999999999999998 45544432 27899999999887 1 22 3666665532 1
Q ss_pred cCChhH-------HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 264 DYDDEV-------CLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 264 ~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
-|+... ...+|..+.+.|+| ||.|.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 232211 24689999999999 89886643
No 150
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=1.6e-06 Score=84.51 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=77.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C----C--CCccEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S----I--PSADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~----~--~~~D~i 256 (359)
..++.+|||+|||+|..+..+++... ..+++++|. +..++.+++ ..+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45678999999999999999998754 468999998 667766543 3568999999876 3 1 149999
Q ss_pred Eec------chhccCCh-------hH-------HHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 257 LFK------LIFHDYDD-------EV-------CLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 257 ~~~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
++. .+++..++ ++ -.++|.++.+.||| ||+++......
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 973 34544333 11 14789999999999 99888766554
No 151
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.38 E-value=1.1e-06 Score=79.30 Aligned_cols=89 Identities=17% Similarity=0.270 Sum_probs=63.5
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCCcc-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPSAD- 254 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~~D- 254 (359)
..+++.++ ..++.+|||||||+|.++..++++.+ +++++|. +.+++.++. .++++++.+|+.+ +++.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 34555554 56678999999999999999999986 4888898 666665543 4789999999998 665566
Q ss_pred -EEEecchhccCChhHHHHHHHHHH
Q 043623 255 -AFLFKLIFHDYDDEVCLKLLKNCR 278 (359)
Q Consensus 255 -~i~~~~vlh~~~d~~~~~iL~~~~ 278 (359)
.++.++.-++++. .++.++.
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll 115 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLL 115 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHh
Confidence 3445555555544 3444444
No 152
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.38 E-value=9.1e-07 Score=80.71 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=60.2
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCCCc--c
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIPSA--D 254 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~~~--D 254 (359)
..+++.++ ..++.+|||||||+|.++..++++.+ +++++|. +.+++.+++ .++++++.+|+.+ +++++ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 34455554 56678999999999999999999975 8999998 777777654 3689999999998 55543 5
Q ss_pred EEEecchhccCCh
Q 043623 255 AFLFKLIFHDYDD 267 (359)
Q Consensus 255 ~i~~~~vlh~~~d 267 (359)
.|+. +.-++.+.
T Consensus 108 ~vv~-NlPY~iss 119 (272)
T PRK00274 108 KVVA-NLPYNITT 119 (272)
T ss_pred eEEE-eCCccchH
Confidence 5544 44455443
No 153
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.38 E-value=2e-06 Score=77.74 Aligned_cols=94 Identities=17% Similarity=0.253 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCCC-ccEEEecchhcc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIPS-ADAFLFKLIFHD 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~~-~D~i~~~~vlh~ 264 (359)
.++.|||||||+|.++...+.+... ++..++..+|.+.|++ .+||.++.|-+++ ++|+ +|+++..-.=+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~-~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAK-KVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcc-eEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 3578999999999999988887543 7889998888777664 7999999999999 8886 999998755555
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEE
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVI 291 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~ll 291 (359)
+-++...+-.-.+++.|+| .|+++
T Consensus 256 L~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC---CCccc
Confidence 5566666656678899999 78775
No 154
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.37 E-value=2.9e-06 Score=77.10 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=74.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CCCccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IPSADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~~~D~i~~~~ 260 (359)
..++.+|||+|||+|..+..+++... ..+++++|. +..++.+++ ..+|+++..|... + .+.||.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999998764 358999999 667665543 3568899898765 2 23599998631
Q ss_pred ------hhc-------cCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 261 ------IFH-------DYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 261 ------vlh-------~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
++. .++.+.. .++|+++.+.||| ||+|+......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 221 1232222 3599999999999 89887655443
No 155
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.35 E-value=2.9e-06 Score=82.40 Aligned_cols=105 Identities=10% Similarity=0.150 Sum_probs=75.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C-C-C-CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S-I-P-SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~-~-~-~~D~i~~~ 259 (359)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+|+++.+|..+ + . + .||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999999876 4679999999 677766553 3468899999876 3 2 2 49999862
Q ss_pred ------chhcc-------CChhH-------HHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 260 ------LIFHD-------YDDEV-------CLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 260 ------~vlh~-------~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
.++.. ++.++ =.++|.++.+.|+| ||.++........
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~ 371 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTK 371 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCCh
Confidence 22221 12111 14679999999999 8987666555433
No 156
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.34 E-value=4.7e-06 Score=68.22 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=88.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-C-----CC-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S-----IP- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~-----~~- 251 (359)
+...+.++ ...+.-||++|.|||.++.+++.+. ++-..+.++. ++......+ -+.++++.||.++ . .+
T Consensus 38 ~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 38 RKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred HHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence 34455555 6677899999999999999998875 5557888887 676666554 6777899999887 2 22
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
.||.|++.--+-+++.....++|+.+...|++ ||.++-....
T Consensus 116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred CeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 39999999999999999999999999999999 8888877665
No 157
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.33 E-value=4.7e-06 Score=81.46 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=63.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCC-----CC--CccEEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQS-----IP--SADAFL 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~-----~~--~~D~i~ 257 (359)
..++.+|||+|||+|.++..+++.. .+++++|. +++++.+++ .++++++.+|+.+. +. .||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4566899999999999999999875 58999999 778877664 35799999998652 22 389998
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
+.- |......+++.+.+ ++| ++.++|
T Consensus 373 ~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyv 398 (443)
T PRK13168 373 LDP-----PRAGAAEVMQALAK-LGP---KRIVYV 398 (443)
T ss_pred ECc-----CCcChHHHHHHHHh-cCC---CeEEEE
Confidence 743 21112244555544 577 454444
No 158
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.30 E-value=2.2e-06 Score=83.09 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=80.2
Q ss_pred ChhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccc--cCCCCeEEEEcCCchHHHHHHHHHC----CCCeEEEeec-h
Q 043623 155 NIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHI--FDGLSSLVEVGGGTGSFARIISEAF----PSIKCSVLEL-P 227 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~ 227 (359)
..|+-+++|+..-..|.+++.. .+....... -.+...|+|||||+|-++...+++. ...++++++- +
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred ccHhhHhcCHHHHHHHHHHHHH------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 4577788888887888877532 222221100 0135789999999999998776654 3468999997 4
Q ss_pred HHHhcC----C--C-CCCceEEeCCCCC-CCC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceE
Q 043623 228 HVIADL----P--E-TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKV 290 (359)
Q Consensus 228 ~~i~~a----~--~-~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~l 290 (359)
.++... + . .++|+++.+|+.+ ..| .+|+|++-..=....+|-..+.|..+.+.||| ||.+
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~ 293 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIM 293 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEE
Confidence 333221 1 1 6899999999999 666 49999877554333444455778888999999 6543
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.29 E-value=2.2e-06 Score=72.71 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=65.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCceEEeCCCCCC------CC-CccE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE---------TDNLKFIAGDMNQS------IP-SADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~---------~~rv~~~~~d~~~~------~~-~~D~ 255 (359)
..++.+|||+|||+|..++.+++..+..+++.-|.+++++..+. ..++.+...|-.++ .+ .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999999867779999998666554331 46778877765442 12 4999
Q ss_pred EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
|+.+.++|+ ++....+++.+.+.|+| +|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999975 45567889999999999 77777766654
No 160
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.26 E-value=3.1e-06 Score=77.83 Aligned_cols=88 Identities=23% Similarity=0.414 Sum_probs=66.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~ 252 (359)
..+++... ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 44555554 5677899999999999999999874 47899998 667766543 4689999999998 6677
Q ss_pred ccEEEecchhccCChhHHHHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLL 274 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL 274 (359)
+|+|+. +..++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 897765 555666665555555
No 161
>PRK04148 hypothetical protein; Provisional
Probab=98.26 E-value=1.2e-05 Score=64.44 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCchH-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCC----CccEEEecchhccCCh
Q 043623 194 GLSSLVEVGGGTGS-FARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIP----SADAFLFKLIFHDYDD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~----~~D~i~~~~vlh~~~d 267 (359)
...+|+|||||+|. ++..|.+. +..++++|+ +..++.+++ ..++++..|.+++-+ ++|+|...+ ++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir-----pp 87 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PP 87 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC-----CC
Confidence 45789999999996 77777765 568999999 777777764 457899999999533 599999886 45
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 268 EVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
.+.+.-+.++.+.. |.-++|.....+.
T Consensus 88 ~el~~~~~~la~~~-----~~~~~i~~l~~e~ 114 (134)
T PRK04148 88 RDLQPFILELAKKI-----NVPLIIKPLSGEE 114 (134)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEcCCCCC
Confidence 66677777777766 4567776554433
No 162
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.25 E-value=2.7e-06 Score=76.68 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=77.6
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechH-HHhcCCC------------CCCceEEeCCCCC-
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPH-VIADLPE------------TDNLKFIAGDMNQ- 248 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~i~~a~~------------~~rv~~~~~d~~~- 248 (359)
.++..+ .+++..++|+|||-|.-++..-++.-+ .++++|+.+ .|++++. .-.+.|+++|-+.
T Consensus 109 ~LI~~y---~~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 109 VLINLY---TKRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHH---hccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 344444 367789999999999999988876432 789999954 5777663 2246789998775
Q ss_pred C----C----CCccEEEecchhcc-C-ChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 249 S----I----PSADAFLFKLIFHD-Y-DDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 249 ~----~----~~~D~i~~~~vlh~-~-~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
. + |.||+|-+.+++|. | +.+.+..+|+++.+.|+| ||.++=
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIg 235 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIG 235 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEE
Confidence 1 2 23999999999998 3 466677899999999999 776654
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.21 E-value=2e-06 Score=74.73 Aligned_cols=95 Identities=25% Similarity=0.309 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-------CCCcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-------IPSAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-------~~~~D 254 (359)
.++++||+||+++|.-+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + ...||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4578999999999999999999887 589999998 666665543 6899999999875 1 12599
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+|++-. +...-..++..+.+.|+| || ++|+|.+
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~---gg-vii~DN~ 156 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRP---GG-VIIADNV 156 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEE---EE-EEEEETT
T ss_pred EEEEcc-----cccchhhHHHHHhhhccC---Ce-EEEEccc
Confidence 999875 334456789999999999 55 5555544
No 164
>PLN02476 O-methyltransferase
Probab=98.21 E-value=5.3e-06 Score=75.11 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=75.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSA 253 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~ 253 (359)
..++++|||||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + . +.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45679999999999999999999875 668999998 666666553 6799999999876 1 1 259
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
|+|++-. +...-..++..+.+.|+| ||.|++-+..+
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGvIV~DNvL~ 231 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGVIVMDNVLW 231 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEecCcc
Confidence 9998864 334457889999999999 77655544443
No 165
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.20 E-value=2.9e-06 Score=72.56 Aligned_cols=93 Identities=12% Similarity=0.264 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCC--ceEEeCCCCC--CCC--CccEEEecchhc---
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDN--LKFIAGDMNQ--SIP--SADAFLFKLIFH--- 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~r--v~~~~~d~~~--~~~--~~D~i~~~~vlh--- 263 (359)
...-|||||||+|..+..+... +..++++|+ |.|++.|.+ .. -.++.+||=+ |++ .||.+++...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3678999999999988887775 468999999 899998875 22 3578888888 444 399987765542
Q ss_pred c------CChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 264 D------YDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 264 ~------~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
| .+......++..++..|++ |++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 1 2333345678889999999 787765
No 166
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.17 E-value=4.5e-06 Score=72.45 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=65.5
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC---------------CCCCceEEeCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP---------------ETDNLKFIAGD 245 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~---------------~~~rv~~~~~d 245 (359)
..++..+. +.+....+|+|||.|......+...+--+.+|+++ +...+.+. ...++++..+|
T Consensus 32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 34566655 67788999999999999998887766545999998 44433222 15678899999
Q ss_pred CCC-C-----CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 246 MNQ-S-----IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 246 ~~~-~-----~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
|.+ + +.++|+|++++.+ ++++ ...-|.+....||+ |.+|+-.....+.
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIISTKPFCPR 163 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEESS-SS-T
T ss_pred ccccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEECCCcCCC
Confidence 998 3 2369999999976 5544 44556777788998 7776655555444
No 167
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=5.9e-06 Score=69.31 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCCCccEEEecchh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIPSADAFLFKLIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~~~D~i~~~~vl 262 (359)
-.+++|+|+|||||.+++..+-..|. +++++|+ |++++.+++ ..+|.|+..|..+....+|.++++--+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 34678999999999999998887665 8999999 888887765 568999999999855568888887544
No 168
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=4.4e-06 Score=74.35 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCC-
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYD- 266 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~- 266 (359)
.+.+..++|+|||.|.++. .+|.+..++.|+ ...+..++..+.......|+.. |++ .||.++...++||++
T Consensus 43 ~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 3457899999999998765 358899999999 5667777765544677788888 665 499999999999987
Q ss_pred hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 267 DEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 267 d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.....++++++.+.++| ||..+|.-+
T Consensus 119 ~~RR~~~l~e~~r~lrp---gg~~lvyvw 144 (293)
T KOG1331|consen 119 RERRERALEELLRVLRP---GGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHHHhcC---CCceEEEEe
Confidence 44466899999999999 999877643
No 169
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.15 E-value=3.9e-06 Score=76.91 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh 263 (359)
.++.|||||||||.++...+++.. .++.++|..++++.+.+ .+.|+++.+.+.+ .+| ..|+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 468999999999999999999874 58999998777666553 6779999999988 444 599998876544
Q ss_pred cCChhH-HHHHHHHHHHhcCCCCCCceEE
Q 043623 264 DYDDEV-CLKLLKNCREAVASSDGREKVI 291 (359)
Q Consensus 264 ~~~d~~-~~~iL~~~~~~L~p~~~gG~ll 291 (359)
..--+. .-.+|-.=-+.|+| ||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 432222 12344444568999 78665
No 170
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.14 E-value=1.2e-05 Score=69.19 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=89.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC-CCC-----CccEEEecchhccCCh-
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-SIP-----SADAFLFKLIFHDYDD- 267 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~~-----~~D~i~~~~vlh~~~d- 267 (359)
..++|||||=+....+.- .+-..++.+|+...- -.+...||++ |.| .||+|.++-||-+.|+
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~~--------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQH--------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCCC--------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 479999999876655542 445678999984321 2245689998 776 2999999999988884
Q ss_pred hHHHHHHHHHHHhcCCCCCCce-----EEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623 268 EVCLKLLKNCREAVASSDGREK-----VIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS 342 (359)
Q Consensus 268 ~~~~~iL~~~~~~L~p~~~gG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 342 (359)
.+.-++++++++.|+| +|. ++|+=+... ..+.+-.+.+.|.++++..||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 4566899999999999 788 766533211 12344448999999999999999
Q ss_pred eeEEecC
Q 043623 343 YKITPLL 349 (359)
Q Consensus 343 ~~~~~~~ 349 (359)
++.....
T Consensus 177 ~~~~~~~ 183 (219)
T PF11968_consen 177 VKYKKSK 183 (219)
T ss_pred EEEEecC
Confidence 9887654
No 171
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=6.4e-06 Score=69.99 Aligned_cols=100 Identities=14% Similarity=0.227 Sum_probs=73.0
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC----------------CCCceEEe
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPE----------------TDNLKFIA 243 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~----------------~~rv~~~~ 243 (359)
.+++.+...+.++.+.||||+|+|.++..++.-- +....+|+|. |+.++..++ ..++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 3444444446788999999999999999888532 4444589998 888765442 56788999
Q ss_pred CCCCCCC---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 244 GDMNQSI---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 244 ~d~~~~~---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
||-..-+ .+||.|.+... +.++.+++..-|+| ||+++|-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEEe
Confidence 9988733 35999988832 23556777777899 8999873
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.12 E-value=1e-05 Score=70.50 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEe-CCCCC---C--CCCccEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIA-GDMNQ---S--IPSADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~-~d~~~---~--~~~~D~i 256 (359)
..++++||+||.+.|.-+..|+...| +.+.+.+|. ++..+.|++ .++|+.+. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 46789999999999999999999999 889999999 778877764 67788888 58766 2 2459999
Q ss_pred EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
++-. ....-..+|..+.+.|+| || ++|+|.+....
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~---GG-liv~DNvl~~G 171 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRP---GG-LIVADNVLFGG 171 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCC---Cc-EEEEeecccCC
Confidence 8864 223345789999999999 55 55555555443
No 173
>PLN02823 spermine synthase
Probab=98.12 E-value=1e-05 Score=75.62 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-C-CCccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-I-PSADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~-~~~D~i~ 257 (359)
+.+++||.||||.|..+..+++..+..+++++|+ +++++.+++ .+|++++.+|..+ . . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4568999999999999999998766678999999 778877663 4799999999877 2 2 2499999
Q ss_pred ecchhccCC--hh---HHHHHHH-HHHHhcCCCCCCceEEE
Q 043623 258 FKLIFHDYD--DE---VCLKLLK-NCREAVASSDGREKVII 292 (359)
Q Consensus 258 ~~~vlh~~~--d~---~~~~iL~-~~~~~L~p~~~gG~lli 292 (359)
+--. ..+. .. -..++++ .+++.|+| ||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 8631 1110 00 0235777 88999999 786554
No 174
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.11 E-value=7.2e-06 Score=70.97 Aligned_cols=96 Identities=13% Similarity=0.171 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---C-CccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---P-SADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~-~~D~i~~~~vl 262 (359)
...+|||+|||+|.++..++.+.. .+++++|. +++++.+++ ..+++++.+|+++.. . .||+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666554 58999998 667665543 357999999987621 2 49999887553
Q ss_pred ccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeeec
Q 043623 263 HDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIVV 297 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~~ 297 (359)
+. . -...+++.+.. .|+| ++ +++++...
T Consensus 132 ~~-g--~~~~~l~~l~~~~~l~~---~~-iv~ve~~~ 161 (199)
T PRK10909 132 RK-G--LLEETINLLEDNGWLAD---EA-LIYVESEV 161 (199)
T ss_pred CC-C--hHHHHHHHHHHCCCcCC---Cc-EEEEEecC
Confidence 22 1 12234454544 3777 44 66666543
No 175
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.09 E-value=2.1e-05 Score=71.77 Aligned_cols=102 Identities=14% Similarity=0.262 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CCCceE--EeCCCCC---CCCCccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSI-KCSVLEL-PHVIADLPE----TDNLKF--IAGDMNQ---SIPSADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~i~~a~~----~~rv~~--~~~d~~~---~~~~~D~i~~~~vl 262 (359)
.+.+|||+|+|.|.-+......++.. +++.+|. +.+++.++. ...... ...++.. +++..|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 45799999999999888888888754 6889998 666665442 111110 1112221 34457999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
-.++++...++++++.+.+. +.|+|+|+..+..
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 98888778888998888774 4899999865544
No 176
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.07 E-value=1.2e-05 Score=73.05 Aligned_cols=97 Identities=16% Similarity=0.275 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CCC-CccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SIP-SADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~~-~~D~i~ 257 (359)
+.+++||-||+|.|..++++++..+--+++.+|+ +++++.+++ .+|++++..|..+ ..+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3447999999999999999999988889999999 888887764 4899999999877 344 499999
Q ss_pred ecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 258 FKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 258 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
+-..=. ..+. -...+++.++++|++ +|.++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 875432 1110 124789999999999 7766655
No 177
>PRK00536 speE spermidine synthase; Provisional
Probab=98.02 E-value=2.7e-05 Score=69.98 Aligned_cols=87 Identities=9% Similarity=0.100 Sum_probs=67.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCCCC-CCccEEEecc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQSI-PSADAFLFKL 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~~~-~~~D~i~~~~ 260 (359)
+.+++||-||||-|..++++++. |. +++.+|+ +++++.+++ .+|++++.. +.+.. ..||+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56799999999999999999996 55 9999999 678877664 788888762 32222 3599999875
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
. .+ ....+.++++|+| ||.++.
T Consensus 148 ~----~~---~~fy~~~~~~L~~---~Gi~v~ 169 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE---DGVFIS 169 (262)
T ss_pred C----CC---hHHHHHHHHhcCC---CcEEEE
Confidence 3 22 3668899999999 776655
No 178
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.99 E-value=2.1e-05 Score=69.26 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=68.2
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----C-C-CCceEEeCCCCC--C--CC--CccEEEecchh
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----E-T-DNLKFIAGDMNQ--S--IP--SADAFLFKLIF 262 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~-~-~rv~~~~~d~~~--~--~~--~~D~i~~~~vl 262 (359)
..+||||||.|.++..+++++|+..++|+|+ ...+..+. + . +||.++++|+.. + .+ +.|-|.+++-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 4899999999999999999999999999998 44443332 1 3 389999999876 1 22 3566655532
Q ss_pred ccCChhH-------HHHHHHHHHHhcCCCCCCceEEEE
Q 043623 263 HDYDDEV-------CLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 263 h~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
--|+... -..+|+.+.+.|+| ||.|.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~a 163 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFA 163 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccC---CCEEEEE
Confidence 1233221 13689999999999 8988764
No 179
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.99 E-value=1.3e-05 Score=82.49 Aligned_cols=96 Identities=8% Similarity=0.076 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCceEEeCCCCCC---CC-CccEEEecc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T-DNLKFIAGDMNQS---IP-SADAFLFKL 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~-~rv~~~~~d~~~~---~~-~~D~i~~~~ 260 (359)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++.+|+++. .+ .||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999999863 337999999 777777664 2 5899999998762 22 599999852
Q ss_pred hh--c------cCC-hhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 261 IF--H------DYD-DEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 261 vl--h------~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
-- . .+. ...-..++..+.+.|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 11 0 000 12235688899999999 8877654
No 180
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.97 E-value=3e-05 Score=74.31 Aligned_cols=99 Identities=7% Similarity=-0.012 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCceEEeCCCCCC---C---C-CccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T-DNLKFIAGDMNQS---I---P-SADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~-~rv~~~~~d~~~~---~---~-~~D~i 256 (359)
.++.+|||+|||+|.++...+.. ...+++++|+ +.+++.+++ . ++++++.+|+++. + . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 35689999999999998876653 3448999999 777776653 2 4789999999872 1 2 49999
Q ss_pred EecchhccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 257 LFKLIFHDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 257 ~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
++.--...-+. ..-..+++.+.+.|+| ||.++.+..
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC 340 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 97733211111 1233556678899999 888877653
No 181
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.94 E-value=3.5e-05 Score=66.36 Aligned_cols=141 Identities=16% Similarity=0.239 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCc--eEEeCCCCC-CCC--CccEEEecchhcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNL--KFIAGDMNQ-SIP--SADAFLFKLIFHD 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv--~~~~~d~~~-~~~--~~D~i~~~~vlh~ 264 (359)
+....++|||||-|.....+..+.- -+.+-.|- ..|++.++. .+.| .+..+|-+. ++. ++|+++.+..+|-
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 4456899999999999999998752 26788887 678887765 2333 456677666 655 4999999999985
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc------ccCHHHHHHHHHhc
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI------ERSEKEWERLFFDA 338 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~t~~e~~~ll~~a 338 (359)
.+| ...-+.+++.+||| +| ++|....-.+.-. +-.+...+.-+-..||. .-...++..+|..|
T Consensus 150 ~Nd--LPg~m~~ck~~lKP---Dg-~FiasmlggdTLy-----ELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 150 TND--LPGSMIQCKLALKP---DG-LFIASMLGGDTLY-----ELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hcc--CchHHHHHHHhcCC---Cc-cchhHHhccccHH-----HHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 454 34668889999999 66 4444443333211 11111222112123432 22457899999999
Q ss_pred CCceeeE
Q 043623 339 GFTSYKI 345 (359)
Q Consensus 339 Gf~~~~~ 345 (359)
||....+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9997554
No 182
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.94 E-value=0.00019 Score=63.35 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=83.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHh-cCCCCCCce-EEeCCCCC--------CC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIA-DLPETDNLK-FIAGDMNQ--------SI 250 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~-~a~~~~rv~-~~~~d~~~--------~~ 250 (359)
..+++.+. ....+.+|||+|||||.++..+++. +-.+++++|. +.++. ..++..++. +...|+.. ++
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 34555544 1135679999999999999999987 3358999999 54544 455556654 33334432 11
Q ss_pred CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc----
Q 043623 251 PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER---- 326 (359)
Q Consensus 251 ~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---- 326 (359)
..+|+++.+..+ +|..+.+.|+| |-.++++-+-..-.. ... ..+|-.+
T Consensus 142 ~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~KPqFE~~~---------~~~------~~~giv~~~~~ 193 (228)
T TIGR00478 142 ATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFKPQFEAGR---------EKK------NKKGVVRDKEA 193 (228)
T ss_pred eeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcChHhhhcH---------hhc------CcCCeecCHHH
Confidence 237777776543 47888888988 444445422111110 000 0122222
Q ss_pred ---CHHHHHHHHHhcCCceeeEEecC
Q 043623 327 ---SEKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 327 ---t~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
-.+++...+.+.||++..+.+.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 194 IALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 35677778888899998887764
No 183
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.93 E-value=1.2e-05 Score=72.05 Aligned_cols=99 Identities=18% Similarity=0.308 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---C-CC-CccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---S-IP-SADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~-~~-~~D~i 256 (359)
+.+++||-||+|.|..+.++++..+..+++++|+ |.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4679999999999999999998766679999999 778777664 4799999999865 2 23 59999
Q ss_pred EecchhccCChh--HHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 257 LFKLIFHDYDDE--VCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 257 ~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+.-..=-..+.. -...+++.+++.|+| +|.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 875432111111 135789999999999 77666654
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.93 E-value=3e-05 Score=69.32 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=73.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-------CC
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-------PS 252 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-------~~ 252 (359)
..+.++||+||+++|.-+..++... ++.+++.+|. ++..+.|++ .++|+++.||..+ + . ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3457899999999999999999886 4679999998 655555543 6899999999876 2 1 35
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
||+|++-.- ...-..++..+.+.|+| ||. +|+|.+.
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~---GGv-iv~DNvl 192 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKV---GGV-IGYDNTL 192 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCC---CeE-EEEcCCC
Confidence 999988742 33356788888999999 665 5555443
No 185
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.92 E-value=5.5e-05 Score=70.14 Aligned_cols=97 Identities=16% Similarity=0.281 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC----CCCeEEEeec-hHHHhcC----C--CCCCceE--EeCCCCCC---C-----C
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAF----PSIKCSVLEL-PHVIADL----P--ETDNLKF--IAGDMNQS---I-----P 251 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~i~~a----~--~~~rv~~--~~~d~~~~---~-----~ 251 (359)
.++..|+|+|||+|.-+..|+++. ...+++.+|+ .+.++.+ + ..+.|++ +.+|+.++ . +
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 356789999999999888777655 3467999999 4454433 3 2355665 88888662 1 1
Q ss_pred -CccEE-EecchhccCChhHHHHHHHHHHH-hcCCCCCCceEEE
Q 043623 252 -SADAF-LFKLIFHDYDDEVCLKLLKNCRE-AVASSDGREKVII 292 (359)
Q Consensus 252 -~~D~i-~~~~vlh~~~d~~~~~iL~~~~~-~L~p~~~gG~lli 292 (359)
...++ ++.+.+.+++++++..+|+++++ .|+| |+.++|
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 24555 44569999999999999999999 9999 787777
No 186
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.92 E-value=3.8e-05 Score=71.68 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--C-CCccEEEec
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--I-PSADAFLFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~-~~~D~i~~~ 259 (359)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .++++|+.+|+.+ . . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4589999999999999999984 468999999 778877653 3579999999976 2 2 249999887
No 187
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.91 E-value=5.8e-05 Score=65.55 Aligned_cols=124 Identities=15% Similarity=0.258 Sum_probs=87.2
Q ss_pred EEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--C-ccEEEecchhccCC
Q 043623 198 LVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP--S-ADAFLFKLIFHDYD 266 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~--~-~D~i~~~~vlh~~~ 266 (359)
|+||||-.|.+.+.|+++..--++++.|+ +..++.|++ .++|++..+|-++.++ + .|+|+.+. +.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG----MG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG----MG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE----E-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec----CC
Confidence 68999999999999999988778999999 666665553 7899999999887443 3 88998887 45
Q ss_pred hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEE
Q 043623 267 DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKIT 346 (359)
Q Consensus 267 d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 346 (359)
-....+||.+....++. ..++++ .+. .....++++|.+.||.+.+=.
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP~-----------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QPN-----------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EES-----------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eCC-----------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 56678899988887765 345444 321 046778999999999988765
Q ss_pred ec---CCcceEEEEE
Q 043623 347 PL---LGLRSFIEVY 358 (359)
Q Consensus 347 ~~---~~~~~~i~~~ 358 (359)
-+ +-++.+|.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 54 2345566553
No 188
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.88 E-value=3.1e-05 Score=68.45 Aligned_cols=74 Identities=26% Similarity=0.474 Sum_probs=60.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~ 252 (359)
..|+.+-+ .++...||+||.|||.++..++++. -+|+++++ |.+++...+ ....+++.+|+++ ++|-
T Consensus 48 ~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 48 DQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 45666555 7788999999999999999999984 47888888 777765543 5789999999999 8898
Q ss_pred ccEEEec
Q 043623 253 ADAFLFK 259 (359)
Q Consensus 253 ~D~i~~~ 259 (359)
||.++.+
T Consensus 124 fd~cVsN 130 (315)
T KOG0820|consen 124 FDGCVSN 130 (315)
T ss_pred cceeecc
Confidence 9988774
No 189
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.83 E-value=3.2e-05 Score=70.80 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=62.9
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC--C-C--
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ--S-I-- 250 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~--~-~-- 250 (359)
.+++..+. ..++..+||++||.|.++..+++..| +.+++++|. |++++.+++ .+|++++.+|+.+ . .
T Consensus 9 ~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 9 DEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 56677665 45678999999999999999999986 789999999 888877764 3689999999886 1 1
Q ss_pred --CCccEEEecchh
Q 043623 251 --PSADAFLFKLIF 262 (359)
Q Consensus 251 --~~~D~i~~~~vl 262 (359)
+.+|.|++---+
T Consensus 87 ~~~~vDgIl~DLGv 100 (296)
T PRK00050 87 GLGKVDGILLDLGV 100 (296)
T ss_pred CCCccCEEEECCCc
Confidence 148888876433
No 190
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.80 E-value=6.4e-05 Score=64.69 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C--C-C-ccEEEe
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I--P-S-ADAFLF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~--~-~-~D~i~~ 258 (359)
.+.+|||++||+|.++.+++.+... +++++|. +.+++.+++ .++++++.+|.++ . . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4689999999999999999998764 7999998 566655443 3578999999865 1 1 1 2 566666
Q ss_pred cchhccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeeec
Q 043623 259 KLIFHDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIVV 297 (359)
Q Consensus 259 ~~vlh~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~~ 297 (359)
.=-+. .. ...+++..+.. .|++ +.++|+|...
T Consensus 128 DPPy~-~~--~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFF-NG--ALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCC-CC--cHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 54332 22 12334444433 5666 5577777643
No 191
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.79 E-value=0.00025 Score=61.46 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC---CCC--CccEEEe
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ---SIP--SADAFLF 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~---~~~--~~D~i~~ 258 (359)
+.+.+|||...|-|..+++.+++.. .+++-++- |.+++.|+. ..+|+++.||..+ .++ +||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi- 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII- 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe-
Confidence 4689999999999999999999854 26666776 788877763 4578999999987 455 389886
Q ss_pred cchhccCC------hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623 259 KLIFHDYD------DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE 332 (359)
Q Consensus 259 ~~vlh~~~------d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~ 332 (359)
|+-| .--...+.+++++.|+| ||+++-.--........ .| -+....
T Consensus 211 ----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~Pg~ryrG---------~d------------~~~gVa 262 (287)
T COG2521 211 ----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNPGKRYRG---------LD------------LPKGVA 262 (287)
T ss_pred ----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCCCccccc---------CC------------hhHHHH
Confidence 3322 22245789999999999 99997654332211110 00 246778
Q ss_pred HHHHhcCCceeeEEec
Q 043623 333 RLFFDAGFTSYKITPL 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
+-|+++||.+++....
T Consensus 263 ~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 263 ERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHhcCceeeeeehh
Confidence 8999999998776654
No 192
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.79 E-value=9e-05 Score=72.27 Aligned_cols=91 Identities=18% Similarity=0.300 Sum_probs=63.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C---CC--CccEEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S---IP--SADAFL 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~---~~--~~D~i~ 257 (359)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+ + .. .||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999874 37999999 788877664 4689999999865 1 21 389998
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
+.--= ..- ...+++.+.+ ++| ++.+++
T Consensus 368 ~dPPr--~G~--~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDPPR--KGC--AAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECcCC--CCC--CHHHHHHHHh-cCC---CEEEEE
Confidence 64321 010 1244555443 788 554444
No 193
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.00015 Score=63.00 Aligned_cols=119 Identities=17% Similarity=0.249 Sum_probs=85.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCceEEeCCCCC--CCCC-ccEEEecchhcc
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-P---HVIADLPE---TDNLKFIAGDMNQ--SIPS-ADAFLFKLIFHD 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~i~~a~~---~~rv~~~~~d~~~--~~~~-~D~i~~~~vlh~ 264 (359)
..+++|||.|.|..++-++-.+|+.+++.+|. . ..++.+.. -++++++.+.+++ ..+. ||+|++..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999999999999999997 2 33444332 6789999998887 2335 9999998753
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK 344 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 344 (359)
....++.-+...+++ ||+++..-...... -..+.+.....-|+++.+
T Consensus 146 ----~L~~l~e~~~pllk~---~g~~~~~k~~~~~~--------------------------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 146 ----SLNVLLELCLPLLKV---GGGFLAYKGLAGKD--------------------------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ----chHHHHHHHHHhccc---CCcchhhhHHhhhh--------------------------hHHHHHHHHHhhcCcEEE
Confidence 123456667777888 78766532211000 234556667777888888
Q ss_pred EEec
Q 043623 345 ITPL 348 (359)
Q Consensus 345 ~~~~ 348 (359)
+...
T Consensus 193 ~~~~ 196 (215)
T COG0357 193 VFSL 196 (215)
T ss_pred EEEe
Confidence 8766
No 194
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.75 E-value=1.5e-05 Score=76.52 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec------hHHHhcCCCCCCceEEeCCC--CC-CCCC--ccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL------PHVIADLPETDNLKFIAGDM--NQ-SIPS--ADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~i~~a~~~~rv~~~~~d~--~~-~~~~--~D~i~~~~vl 262 (359)
....+||||||+|.++..|.++ + ++.+-. +..++.|.+ ..|..+-+-+ .+ |+|+ ||+|-++.++
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~--V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--N--VTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--C--ceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhccccc
Confidence 3468999999999999999997 2 333332 223333332 2233333333 22 7774 9999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
..|...+ ..+|-++-|+|+| ||.+++..+-..
T Consensus 192 i~W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 192 IPWHPND-GFLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred ccchhcc-cceeehhhhhhcc---CceEEecCCccc
Confidence 9998765 3589999999999 999888766544
No 195
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00056 Score=57.03 Aligned_cols=68 Identities=16% Similarity=0.342 Sum_probs=51.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCC--CCCccEEEecchh
Q 043623 195 LSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQS--IPSADAFLFKLIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~--~~~~D~i~~~~vl 262 (359)
+.-++|||||+|..+..+++.. |+..+...|+ |++.+...+ .-++..+..|+.+. ..+.|+++++--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCc
Confidence 6889999999999999988764 7888999999 777665332 34466788888873 2458988887544
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00018 Score=64.29 Aligned_cols=91 Identities=21% Similarity=0.327 Sum_probs=64.1
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCceEEeCCCCC-CCCC--c
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----ETDNLKFIAGDMNQ-SIPS--A 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~~~rv~~~~~d~~~-~~~~--~ 253 (359)
..+++..+ ..++..|+|||+|.|.++..|+++... ++++++ +..++..+ ..++++++.+|+.+ ++++ .
T Consensus 20 ~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 20 DKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 45666665 556789999999999999999999664 666666 44444443 36899999999999 7774 2
Q ss_pred cEEEecchhccCChhHHHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKN 276 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~ 276 (359)
-..+.++.-++.+-+-..++|..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhc
Confidence 23455566666666544444443
No 197
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.73 E-value=0.00036 Score=62.84 Aligned_cols=135 Identities=17% Similarity=0.153 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-HH------H-hc---CC---------------------------
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-HV------I-AD---LP--------------------------- 234 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~------i-~~---a~--------------------------- 234 (359)
+...+||-=|||-|.++.++++. +..+.+-|.. -| + .. ..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 34579999999999999999998 4455555542 12 1 11 00
Q ss_pred ---------CCCCceEEeCCCCC--CCC----CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 235 ---------ETDNLKFIAGDMNQ--SIP----SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 235 ---------~~~rv~~~~~d~~~--~~~----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
...++....|||.+ +.+ .+|+|+.++.+.-- +.+..+|..|.+.||| ||.++=+-+..-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh 207 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKP---GGYWINFGPLLYH 207 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhcc---CCEEEecCCcccc
Confidence 03468889999998 333 49999999777433 3378999999999999 8866655554333
Q ss_pred CCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEe
Q 043623 300 KKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 347 (359)
..... ......-+.+.+|+.++.++.||++.+-..
T Consensus 208 ~~~~~-------------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 FEPMS-------------IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCC-------------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 22110 000112456899999999999999877554
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.70 E-value=5.1e-05 Score=64.75 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=67.3
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEeec-h---HHHhcCCC---CCCceEEeCCCCC-CCC-CccEEEecchhccCCh
Q 043623 197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-P---HVIADLPE---TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYDD 267 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~---~~i~~a~~---~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~d 267 (359)
+++|||+|.|..++-++-.+|+.+++.+|. . ..++.+.. -++++++.+.+++ ..+ .||+|++..+- +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence 899999999999999999999999999997 2 22332221 5689999998887 333 59999999763 2
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 268 EVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 268 ~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
...++.-+.+.+++ ||+++..-
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 34678888888999 89888764
No 199
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.61 E-value=0.00017 Score=71.54 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC-C-----CCCCceEEeCCCCC---CCC--CccEEEecch
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL-P-----ETDNLKFIAGDMNQ---SIP--SADAFLFKLI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a-~-----~~~rv~~~~~d~~~---~~~--~~D~i~~~~v 261 (359)
....+||||||.|.++..+++.+|+..++|+|. ...+..+ + .-.|+.++.+|+.. .++ +.|.|++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 456899999999999999999999999999998 3333222 1 14678888887642 344 3777766642
Q ss_pred hccCChhH-------HHHHHHHHHHhcCCCCCCceEEEE
Q 043623 262 FHDYDDEV-------CLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 262 lh~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
--|+... ...+|+.+.+.|+| ||.|.+.
T Consensus 427 -DPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~ 461 (506)
T PRK01544 427 -DPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFA 461 (506)
T ss_pred -CCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEE
Confidence 1232211 24689999999999 8988764
No 200
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.59 E-value=0.00012 Score=64.82 Aligned_cols=67 Identities=15% Similarity=0.340 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC----CCC----CccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ----SIP----SADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~----~~~----~~D~i 256 (359)
.....+||+|||+|..+..++...|+++++++|. +.++..+.+ .+++.++..+|.. +.+ ..|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999999 555554432 7888887555543 333 38888
Q ss_pred Eec
Q 043623 257 LFK 259 (359)
Q Consensus 257 ~~~ 259 (359)
+++
T Consensus 227 vsN 229 (328)
T KOG2904|consen 227 VSN 229 (328)
T ss_pred ecC
Confidence 876
No 201
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.51 E-value=0.00025 Score=67.68 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-C-CCccEEEec
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-I-PSADAFLFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-~-~~~D~i~~~ 259 (359)
++.+|||+|||+|.++..++.. ..+++++|. +.+++.+++ .++++|+.+|+.+ . . ..||+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 4579999999999999999864 468999998 777776653 3479999999865 1 2 349998886
No 202
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.50 E-value=4.8e-05 Score=68.05 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCchHHH-HHHHHHCCCCeEEEeec-hHHHhc----CCC------------------------------CC
Q 043623 194 GLSSLVEVGGGTGSFA-RIISEAFPSIKCSVLEL-PHVIAD----LPE------------------------------TD 237 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~-~~l~~~~p~~~~~~~D~-~~~i~~----a~~------------------------------~~ 237 (359)
++.++||||||.-.+- ...++.+. +++..|. +.-.+. .+. ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999985442 22222222 4777776 333221 110 12
Q ss_pred Cce-EEeCCCCC--CC------CC-ccEEEecchhccC--ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCch
Q 043623 238 NLK-FIAGDMNQ--SI------PS-ADAFLFKLIFHDY--DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPE 305 (359)
Q Consensus 238 rv~-~~~~d~~~--~~------~~-~D~i~~~~vlh~~--~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~ 305 (359)
.|+ ++..|..+ |+ |+ ||++++..+|... +.++-.+.++++.++||| ||.+++........-...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~~t~Y~vG- 209 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLGSTYYMVG- 209 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-SEEEET-
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcCceeEEEC-
Confidence 243 56778876 22 33 9999999999664 455567899999999999 898888776432210000
Q ss_pred HHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEe
Q 043623 306 ITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 347 (359)
..-| ..-..+.+.+++.|+++||.+.+...
T Consensus 210 ----~~~F--------~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 210 ----GHKF--------PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ----TEEE--------E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ----CEec--------ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 0001 11123899999999999999988875
No 203
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.47 E-value=0.0013 Score=59.51 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCceEEeCCCCCCCC------C-----
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP---------ETDNLKFIAGDMNQSIP------S----- 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~---------~~~rv~~~~~d~~~~~~------~----- 252 (359)
.+...|+.+|||-=.....+... +++++.-+|+|++++.-+ ...+.+++..|+.+.+. +
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999988777776332 367888899998876422 25788999999874221 1
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHH-HHHHHhhhhhhh-hcC---CcccC
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT-EAKLLYDALMMT-CVP---GIERS 327 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---g~~~t 327 (359)
.=++++-.++.+++.+++.++|+.+.+...| |+ .++.|...+-.. .. .. ....... ... ..+ -...+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs-~l~~d~~~~~~~-~~-~~~~~~~~~~--~~~~~~~~~~~~~~~ 230 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---GS-RLAFDYVRPLDG-EW-RAGMRAPVYH--AARGVDGSGLVFGID 230 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---Cc-EEEEEeccccch-hH-HHHHHHHHHH--hhhcccccccccCCC
Confidence 3477888999999999999999999998888 44 555666554111 10 10 0000010 010 001 11247
Q ss_pred HHHHHHHHHhcCCceeeE
Q 043623 328 EKEWERLFFDAGFTSYKI 345 (359)
Q Consensus 328 ~~e~~~ll~~aGf~~~~~ 345 (359)
.+++.++|++.||+....
T Consensus 231 ~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 231 RADVAEWLAERGWRASEH 248 (260)
T ss_pred hhhHHHHHHHCCCeeecC
Confidence 899999999999998765
No 204
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.46 E-value=0.0015 Score=55.08 Aligned_cols=138 Identities=16% Similarity=0.100 Sum_probs=86.7
Q ss_pred ccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhc-----------CCC--CCCceEEeCCCCC-CCC-Ccc
Q 043623 191 IFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIAD-----------LPE--TDNLKFIAGDMNQ-SIP-SAD 254 (359)
Q Consensus 191 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~-----------a~~--~~rv~~~~~d~~~-~~~-~~D 254 (359)
+++++.+|+|+=.|.|.++.-+...- |.-++..+--.+...- +++ ..+++.+..+... ..| ..|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37889999999999999999988753 5444444332222111 111 3444544444444 222 377
Q ss_pred EEEecchhccC-----ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHH
Q 043623 255 AFLFKLIFHDY-----DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEK 329 (359)
Q Consensus 255 ~i~~~~vlh~~-----~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 329 (359)
+++....-|++ ....+.++.+.++++||| ||.++|.|.......... . ...++. ++..
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---d---t~~~~r--------i~~a 187 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---D---TITLHR--------IDPA 187 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---h---hhhhcc--------cChH
Confidence 77775544443 234467889999999999 999999888765544321 1 111111 2678
Q ss_pred HHHHHHHhcCCceeeE
Q 043623 330 EWERLFFDAGFTSYKI 345 (359)
Q Consensus 330 e~~~ll~~aGf~~~~~ 345 (359)
...+..+++||+...-
T Consensus 188 ~V~a~veaaGFkl~ae 203 (238)
T COG4798 188 VVIAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHHHhhcceeeee
Confidence 8888999999997543
No 205
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.45 E-value=0.0043 Score=57.49 Aligned_cols=129 Identities=11% Similarity=0.149 Sum_probs=88.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC--C-CCCccEEEecchhccCChh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ--S-IPSADAFLFKLIFHDYDDE 268 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~--~-~~~~D~i~~~~vlh~~~d~ 268 (359)
+.++.++|||||++|.++..++++ +.+|+++|..++.......++|+...+|.+. + ...+|.+++-.+.. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P- 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P- 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence 357789999999999999999998 5599999987776667778999999999888 3 22489998877632 2
Q ss_pred HHHHHHHHHHHhcCCCCCC-ceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc-eeeEE
Q 043623 269 VCLKLLKNCREAVASSDGR-EKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT-SYKIT 346 (359)
Q Consensus 269 ~~~~iL~~~~~~L~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~-~~~~~ 346 (359)
.++.+-+.++|.. | .+-.|+...++-... +..... ..+.+.+.|.++|.. ..++.
T Consensus 283 --~rva~lm~~Wl~~---g~cr~aIfnLKlpmk~r---~~~v~~---------------~l~~i~~~l~~~g~~~~~~~k 339 (357)
T PRK11760 283 --ARVAELMAQWLVN---GWCREAIFNLKLPMKKR---YEEVRQ---------------CLELIEEQLDENGINAQIQAK 339 (357)
T ss_pred --HHHHHHHHHHHhc---CcccEEEEEEEcCCCCC---HHHHHH---------------HHHHHHHHHHHcCCccceeee
Confidence 2567777778876 2 245566665543322 111110 234467778888873 34555
Q ss_pred ecC
Q 043623 347 PLL 349 (359)
Q Consensus 347 ~~~ 349 (359)
++.
T Consensus 340 hLy 342 (357)
T PRK11760 340 QLY 342 (357)
T ss_pred eee
Confidence 553
No 206
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.36 E-value=0.00055 Score=55.94 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=58.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-C-CCCccE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEA----FPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-S-IPSADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~-~~~~D~ 255 (359)
..+..+|+|+|||.|+++..++.. .|+++++++|. +..++.+.. ..++++..++..+ . ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999982 28899999998 555544432 3567777776655 2 234777
Q ss_pred EEecchhccCChhHHHHHHHHHHH
Q 043623 256 FLFKLIFHDYDDEVCLKLLKNCRE 279 (359)
Q Consensus 256 i~~~~vlh~~~d~~~~~iL~~~~~ 279 (359)
++.-|..-+.++ .+|+...+
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEEeecccchHH----HHHHHHHH
Confidence 777777666655 34555544
No 207
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0016 Score=55.95 Aligned_cols=107 Identities=13% Similarity=0.205 Sum_probs=75.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCC-CC--------C
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-SI--------P 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~--------~ 251 (359)
.+|.+++. .++++..|+|+|+-.|.++..+++.. ++.+++++|+.++-.. .+|.++.+|+.+ +. +
T Consensus 34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHcC
Confidence 56666663 57889999999999999999888875 4456999998655443 449999999987 31 2
Q ss_pred C--ccEEEecchh--------ccC-ChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 252 S--ADAFLFKLIF--------HDY-DDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 252 ~--~D~i~~~~vl--------h~~-~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
. +|+|++-..- +|. .-.-+...+.-+...|+| ||.+++-.+-
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~fq 161 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVFQ 161 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEEe
Confidence 2 6999854322 221 223344567777889999 8888776653
No 208
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.32 E-value=7.9e-05 Score=63.19 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCCCccEEEecchhccCChhH
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDDEV 269 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d~~ 269 (359)
..+.++||+|.|.|..+..++..+.+ +.+-++ ..|..+.+. .-||--. .+-.+ .+ .+|+|.+.+.|....++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~ynVl~~-~ew~~t~~-k~dli~clNlLDRc~~p- 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKNYNVLTE-IEWLQTDV-KLDLILCLNLLDRCFDP- 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcCCceeee-hhhhhcCc-eeehHHHHHHHHhhcCh-
Confidence 34689999999999999988776543 333344 345555543 2222110 01111 11 39999999999554443
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEEeeecC-------CCCCCchHHHHHHHhhhhhhhhcCCccc--CHHHHHHHHHhcCC
Q 043623 270 CLKLLKNCREAVASSDGREKVIIVDIVVN-------EKKDKPEITEAKLLYDALMMTCVPGIER--SEKEWERLFFDAGF 340 (359)
Q Consensus 270 ~~~iL~~~~~~L~p~~~gG~lli~e~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~--t~~e~~~ll~~aGf 340 (359)
-++|+.++.+|+|+ .|++++.= ++| +....+..+. .++ ..+|+.+ ....+.++|+.+||
T Consensus 186 -~kLL~Di~~vl~ps--ngrvivaL-VLP~~hYVE~N~~g~~~rPd-------n~L-e~~Gr~~ee~v~~~~e~lr~~g~ 253 (288)
T KOG3987|consen 186 -FKLLEDIHLVLAPS--NGRVIVAL-VLPYMHYVETNTSGLPLRPD-------NLL-ENNGRSFEEEVARFMELLRNCGY 253 (288)
T ss_pred -HHHHHHHHHHhccC--CCcEEEEE-EecccceeecCCCCCcCCch-------HHH-HhcCccHHHHHHHHHHHHHhcCc
Confidence 48899999999995 67776531 111 1111110000 001 2234432 23467899999999
Q ss_pred ceeeEEecC
Q 043623 341 TSYKITPLL 349 (359)
Q Consensus 341 ~~~~~~~~~ 349 (359)
.+...+..|
T Consensus 254 ~veawTrlP 262 (288)
T KOG3987|consen 254 RVEAWTRLP 262 (288)
T ss_pred hhhhhhcCC
Confidence 987777665
No 209
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.30 E-value=0.00051 Score=62.34 Aligned_cols=91 Identities=16% Similarity=0.302 Sum_probs=64.1
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCceEEeCCCCC-CCCC---
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----ETDNLKFIAGDMNQ-SIPS--- 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----~~~rv~~~~~d~~~-~~~~--- 252 (359)
..+++.++ ..+...|+|||+|.|.++..|++.. -+++++|. +..++..+ ..++++++.+|+.+ ..+.
T Consensus 20 ~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 20 DKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence 45666665 5678999999999999999999987 57888888 55554443 36899999999998 4443
Q ss_pred -ccEEEecchhccCChhHHHHHHHHHHHh
Q 043623 253 -ADAFLFKLIFHDYDDEVCLKLLKNCREA 280 (359)
Q Consensus 253 -~D~i~~~~vlh~~~d~~~~~iL~~~~~~ 280 (359)
-...+.++.-++.+. .++.++...
T Consensus 96 ~~~~~vv~NlPy~is~----~il~~ll~~ 120 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISS----PILRKLLEL 120 (262)
T ss_dssp SSEEEEEEEETGTGHH----HHHHHHHHH
T ss_pred CCceEEEEEecccchH----HHHHHHhhc
Confidence 345555665554443 456666553
No 210
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.28 E-value=0.00068 Score=64.74 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=68.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-CCCccEEEecchhcc
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-IPSADAFLFKLIFHD 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-~~~~D~i~~~~vlh~ 264 (359)
..+|||++||+|.+++.+++..+..++++.|+ +.+++.+++ .+++++..+|... . .+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998877568999999 777776653 3456688888765 2 23599998853 2
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.. ...++..+.+.+++ ||.++|.
T Consensus 135 -Gs--~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence 22 13567777777898 8888887
No 211
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.21 E-value=0.00046 Score=58.49 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=62.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHh-------cCCC------CCCceEEeCCCCCCCCC-ccEEEec
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIA-------DLPE------TDNLKFIAGDMNQSIPS-ADAFLFK 259 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~-------~a~~------~~rv~~~~~d~~~~~~~-~D~i~~~ 259 (359)
-.-+.|||||.|.++..++..+|+.-+.|+++ ..+.+ .++. ..++.+...+.+.-.|. |.---++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999999999998 33322 2221 45566666666653332 2212222
Q ss_pred chhccCChhH-----------HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 260 LIFHDYDDEV-----------CLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 260 ~vlh~~~d~~-----------~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
-.++.++|+. ...++.+..-.|++ ||.++.+.-
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitD 184 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITD 184 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEee
Confidence 2222233322 23466777778898 888876543
No 212
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.21 E-value=0.00028 Score=61.01 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=63.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CCCCccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SIPSADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~~~~D~i~~~~v 261 (359)
..++..|+|.-||.|.++..+++..+..++++.|+ |.+++.+++ .++|..+.+|..+ +...+|-|+|...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 35678999999999999999999777788999999 777655442 6789999999887 3234998888753
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceE
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKV 290 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~l 290 (359)
- .+..+|..+.+.+++ ||.+
T Consensus 179 ~------~~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 179 E------SSLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEE
T ss_pred H------HHHHHHHHHHHHhcC---CcEE
Confidence 1 234678888888998 6544
No 213
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.19 E-value=0.00017 Score=48.00 Aligned_cols=46 Identities=26% Similarity=0.539 Sum_probs=40.1
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+.|++.|..++++.|..|||+++|+ +..-+.|+|..|...|++.++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence 4577888776678899999999999 578999999999999999986
No 214
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.12 E-value=0.00036 Score=59.52 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=62.1
Q ss_pred HHHHHhcccccC--CCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCC---------C
Q 043623 182 KLIIKDCKHIFD--GLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQ---------S 249 (359)
Q Consensus 182 ~~l~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~---------~ 249 (359)
.++.+.++ .++ +..+|||+||++|.++..++++. +..+++++|+...-. ...+.++.+|+.+ -
T Consensus 10 ~ei~~~~~-~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 10 YEIDEKFK-IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHTTS-SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHCC-CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhh
Confidence 45556555 133 45899999999999999999987 678999999844311 1334444444432 0
Q ss_pred C----CCccEEEecchhccC---------ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 250 I----PSADAFLFKLIFHDY---------DDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 250 ~----~~~D~i~~~~vlh~~---------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
. ..+|+|++-.....- ..+-+...|.-+.+.|+| ||.+++--.
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~~ 140 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKVF 140 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEES
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEec
Confidence 1 248988877632211 112234455556677899 887766443
No 215
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00084 Score=53.86 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC--C-ccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP--S-ADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~--~-~D~i~~~~vl 262 (359)
.++.++|+|||.|.++....- +.+-.++|+|+ |++++.+.. .-++.+.+.|+.++.+ + ||.++.+--+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 468999999999999954433 23347999999 888887664 4556788888888433 3 8998888655
No 216
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.00054 Score=62.77 Aligned_cols=101 Identities=21% Similarity=0.427 Sum_probs=65.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCe-EEEeechHHHh----cCCC---CCCceEEeCCCCC---CCCCccEEEecchhc
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIK-CSVLELPHVIA----DLPE---TDNLKFIAGDMNQ---SIPSADAFLFKLIFH 263 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~i~----~a~~---~~rv~~~~~d~~~---~~~~~D~i~~~~vlh 263 (359)
+++|||||.|.|.-+.++-.-+|+++ ++.++....+. .... .....+...|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 46799999999998888888889885 66666532222 1111 2223334444443 556555555544444
Q ss_pred cC----ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 264 DY----DDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 264 ~~----~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
-+ +.......++++...+.| ||.++|+|...+
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp 229 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP 229 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence 32 333344589999999999 999999997544
No 217
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.00027 Score=57.71 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=65.3
Q ss_pred CCeEEEEcCCchHHHH-HHHHHCCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-----CCCCccEEEe
Q 043623 195 LSSLVEVGGGTGSFAR-IISEAFPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-----SIPSADAFLF 258 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~-~l~~~~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-----~~~~~D~i~~ 258 (359)
+.+||++|+|--.++- .++..-|...|..-|- .+.+++.++ ..++..+..+... ....||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 4789999999655554 4555667778888886 556655443 2333333333332 1124999999
Q ss_pred cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+.++ +-++-...+.+.|+..|+| .|+-++..+-
T Consensus 110 ADCl--FfdE~h~sLvdtIk~lL~p---~g~Al~fsPR 142 (201)
T KOG3201|consen 110 ADCL--FFDEHHESLVDTIKSLLRP---SGRALLFSPR 142 (201)
T ss_pred ccch--hHHHHHHHHHHHHHHHhCc---ccceeEecCc
Confidence 9988 3456667899999999999 7886665553
No 218
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.05 E-value=0.0011 Score=55.61 Aligned_cols=95 Identities=16% Similarity=0.292 Sum_probs=72.8
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCCccEEEecchhccCCh
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDD 267 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d 267 (359)
..+.|+|.|+|-++.-.++. --+++.++. |...+-+.+ ..+++++.+|..+ .+..+|+|+|-..=.-+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 68999999999999877776 237888888 655555554 5789999999999 7877999988764333445
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 268 EVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
++-+.+++.+.+-|+. .++++=.+.
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHH
Confidence 5567889999998888 788775443
No 219
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.05 E-value=0.00024 Score=59.11 Aligned_cols=63 Identities=17% Similarity=0.382 Sum_probs=45.4
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC---CC--C-ccEEEecc
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS---IP--S-ADAFLFKL 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~---~~--~-~D~i~~~~ 260 (359)
..|+|+.||.|..++.+++.+. +++++|+ |..++.++. .+||.++.+|+++. .. . +|+|+++=
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999865 6999998 666665552 67999999999872 22 2 79998763
No 220
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.052 Score=46.36 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=98.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-h----HHHhcCCCCCCceEEeCCCCCCCC------CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-P----HVIADLPETDNLKFIAGDMNQSIP------SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~i~~a~~~~rv~~~~~d~~~~~~------~~D~i~~~~ 260 (359)
++++.+||=+|..+|....++..--++-.+.+++. | +.+..+++.+||-.+-+|+..|.. ..|+|+.-=
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 78899999999999999999999888777888887 3 446667778999999999988632 478876532
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
-.++ ++.-+..++..-||+ ||.+++.=-...-.....+. .. ..+-.+-|++.||
T Consensus 154 ---AQp~-Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp~----~v---------------f~~ev~kL~~~~f 207 (231)
T COG1889 154 ---AQPN-QAEILADNAEFFLKK---GGYVVIAIKARSIDVTADPE----EV---------------FKDEVEKLEEGGF 207 (231)
T ss_pred ---CCch-HHHHHHHHHHHhccc---CCeEEEEEEeecccccCCHH----HH---------------HHHHHHHHHhcCc
Confidence 1333 455677888889999 78777654444433333211 11 2333455677899
Q ss_pred ceeeEEecCCc---ceEEEEE
Q 043623 341 TSYKITPLLGL---RSFIEVY 358 (359)
Q Consensus 341 ~~~~~~~~~~~---~~~i~~~ 358 (359)
++.++..+..+ +.+|.++
T Consensus 208 ~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 208 EILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eeeEEeccCCcccceEEEEEe
Confidence 99999988443 5566554
No 221
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.00 E-value=0.0029 Score=53.52 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=71.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCCCccEEEecchhccC
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIPSADAFLFKLIFHDY 265 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~ 265 (359)
.-.+++|||+|.|+|..++.-++.... .++..|+ |..+..++. .-.|.++..|..-+-+.+|+++.+.++++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~-~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAA-EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhH-HHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 445789999999999999988886432 4555666 544444332 445667777766544469999999999765
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~ 301 (359)
+. +.+++. ..+.++.+ |..++|.++..+.-.
T Consensus 156 ~~--a~~l~~-~~~~l~~~--g~~vlvgdp~R~~lp 186 (218)
T COG3897 156 TE--ADRLIP-WKDRLAEA--GAAVLVGDPGRAYLP 186 (218)
T ss_pred hH--HHHHHH-HHHHHHhC--CCEEEEeCCCCCCCc
Confidence 54 446677 55656542 677888787766543
No 222
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.00 E-value=0.0055 Score=49.63 Aligned_cols=95 Identities=17% Similarity=0.292 Sum_probs=63.5
Q ss_pred EEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---ceEEeCCCCC---CCC---CccEEEecchhc
Q 043623 198 LVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-T--DN---LKFIAGDMNQ---SIP---SADAFLFKLIFH 263 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-~--~r---v~~~~~d~~~---~~~---~~D~i~~~~vlh 263 (359)
++|+|||+|... .+....+. ..++++|. +.++..++. . .. +.+..+|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999977 44444333 47888888 555554322 1 11 5777777654 333 48999 554444
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
++.+ ....+..+.+.++| +|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 4433 45789999999999 8988887776544
No 223
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.98 E-value=0.0083 Score=54.44 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=88.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-----hHH-Hh-------------------------cCCC--------
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-----PHV-IA-------------------------DLPE-------- 235 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~-i~-------------------------~a~~-------- 235 (359)
..+||-=|||.|.++..++...+.+++--+.. ... +. +.+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 56899999999999999999877765532111 110 10 0110
Q ss_pred ------CCCceEEeCCCCC--CCC----CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC
Q 043623 236 ------TDNLKFIAGDMNQ--SIP----SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK 303 (359)
Q Consensus 236 ------~~rv~~~~~d~~~--~~~----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~ 303 (359)
.+..+.-+|||.+ +.+ .+|+|+.++.+..- ..+..+|..|...|+| ||.++=+-+..-.....
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKP---GGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccC---CcEEEeccceeeeccCC
Confidence 1223445689888 322 39999999766432 3368999999999999 88777666554433222
Q ss_pred chHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 304 PEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
. +. ..-.+-+.+.+++..+.+.-||++.+-..+
T Consensus 306 ~---------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 306 H---------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred C---------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 1 00 011244568999999999999998876533
No 224
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.97 E-value=0.0025 Score=57.69 Aligned_cols=95 Identities=15% Similarity=0.302 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCchHHHHH-HHHH-CCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC-C--CCCccEEEec
Q 043623 194 GLSSLVEVGGGTGSFARI-ISEA-FPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ-S--IPSADAFLFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~-l~~~-~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~-~--~~~~D~i~~~ 259 (359)
.+.+|+=||||.=-++.- +++. .++..++++|. +++++.+++ ..+++|+.+|..+ + ..+||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 357999999997766554 4443 47788999999 777666542 7899999999876 3 4569999998
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
...- ++.++-.++|.++.+.++| |+.|++
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~ 228 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVV 228 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEE
Confidence 7653 3334457899999999999 665555
No 225
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.95 E-value=0.016 Score=50.17 Aligned_cols=118 Identities=12% Similarity=0.162 Sum_probs=86.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC----CC---CCCceEEeCCCCCCCC---CccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL----PE---TDNLKFIAGDMNQSIP---SADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a----~~---~~rv~~~~~d~~~~~~---~~D~i~~~~vl 262 (359)
...++.||||-++.+.+.+.+.+|...++..|+ +...+.| .+ .++++...+|-+.++. .+|+++...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG-- 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG-- 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence 455699999999999999999999999999998 4443333 22 7889999999887533 389998876
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS 342 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 342 (359)
+.-.....||.+-.+.|+. =-++++. +. . ...+++++|.+.+|.+
T Consensus 94 --MGG~lI~~ILee~~~~l~~---~~rlILQ-Pn------~-----------------------~~~~LR~~L~~~~~~I 138 (226)
T COG2384 94 --MGGTLIREILEEGKEKLKG---VERLILQ-PN------I-----------------------HTYELREWLSANSYEI 138 (226)
T ss_pred --CcHHHHHHHHHHhhhhhcC---cceEEEC-CC------C-----------------------CHHHHHHHHHhCCcee
Confidence 4556677888888888863 2244441 10 0 4667788888888887
Q ss_pred eeEEec
Q 043623 343 YKITPL 348 (359)
Q Consensus 343 ~~~~~~ 348 (359)
..=+-+
T Consensus 139 ~~E~il 144 (226)
T COG2384 139 KAETIL 144 (226)
T ss_pred eeeeee
Confidence 665444
No 226
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.94 E-value=0.0062 Score=56.35 Aligned_cols=96 Identities=18% Similarity=0.323 Sum_probs=71.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCceEEeCCCCC---CCC-Cc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-------------TDNLKFIAGDMNQ---SIP-SA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-------------~~rv~~~~~d~~~---~~~-~~ 253 (359)
++..+||-+|||-|.-++++.+ +|+ -+++.+|+ |.|++.++. .+|++++..|.++ .-. .|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5668999999999999999988 684 47999999 899988772 6899999999987 222 49
Q ss_pred cEEEecchhccCChh-----HHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 254 DAFLFKLIFHDYDDE-----VCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 254 D~i~~~~vlh~~~d~-----~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
|.++.-.. +-+.+ -..++.+-+++.|++ +|.+++..
T Consensus 367 D~vIVDl~--DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLP--DPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQA 407 (508)
T ss_pred cEEEEeCC--CCCCcchhhhhhHHHHHHHHHhcCc---CceEEEec
Confidence 98886532 11111 134567778889999 78777643
No 227
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.0062 Score=53.39 Aligned_cols=97 Identities=20% Similarity=0.397 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC----CeEEEeechH-HHhc-----CCCCCCce--EEeCCCCC---CCCC---cc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPS----IKCSVLELPH-VIAD-----LPETDNLK--FIAGDMNQ---SIPS---AD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~-~i~~-----a~~~~rv~--~~~~d~~~---~~~~---~D 254 (359)
.+....+|+|.|+..=+..+...+.+ ++++-+|+.. +++. +++.+.++ -+++|+.. ..|. -=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999998888887766 7899999843 3322 22244444 46778765 2332 23
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
.++....|-+++++++..+|.+++.+|+| |-.+++
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~Ll 191 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLL 191 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEE
Confidence 45677899999999999999999999999 777776
No 228
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.85 E-value=0.024 Score=49.37 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=91.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-h----HHHhcCCCCCCceEEeCCCCCCC------CCccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-P----HVIADLPETDNLKFIAGDMNQSI------PSADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~----~~i~~a~~~~rv~~~~~d~~~~~------~~~D~i~~~ 259 (359)
+.++.+||-+|..+|....++..-- |+-.+.+++. | +.+..+++..||-.+-.|...|. +..|+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 6788999999999999999998854 5778888887 5 44556667899999999998752 247887765
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
=. .++ ++.-++.++..-||+ ||.++|.=-...-+...++ . . ...+=.+-|++.|
T Consensus 151 Va---Qp~-Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p---~-~---------------vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA---QPD-QARIAALNARHFLKP---GGHLIISIKARSIDSTADP---E-E---------------VFAEEVKKLKEEG 204 (229)
T ss_dssp -S---STT-HHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSH---H-H---------------HHHHHHHHHHCTT
T ss_pred CC---ChH-HHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCH---H-H---------------HHHHHHHHHHHcC
Confidence 32 344 456678889899999 8988876433222111110 0 1 1233355677789
Q ss_pred CceeeEEecCCc---ceEEEE
Q 043623 340 FTSYKITPLLGL---RSFIEV 357 (359)
Q Consensus 340 f~~~~~~~~~~~---~~~i~~ 357 (359)
|+..+...+..+ +.++.+
T Consensus 205 ~~~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 205 FKPLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp CEEEEEEE-TTTSTTEEEEEE
T ss_pred CChheEeccCCCCCCcEEEEE
Confidence 999999988433 444444
No 229
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.79 E-value=0.0014 Score=61.91 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=79.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC--ccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS--ADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~--~D~i~~~~ 260 (359)
..+...++|+|||.|.....+.. +...+.++++. +..+.+... .++-.++.+|+.+ ++++ ||.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34556899999999999988876 45568888887 434433322 3444558889888 6664 99999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
+..|.++.. +++++++++++| ||.+++.+.+....
T Consensus 187 ~~~~~~~~~--~~y~Ei~rv~kp---GG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPDLE--KVYAEIYRVLKP---GGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCcHH--HHHHHHhcccCC---CceEEeHHHHHhhh
Confidence 999998864 779999999999 99998888776544
No 230
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.74 E-value=0.01 Score=58.08 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=68.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CCC-CccEEE--
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SIP-SADAFL-- 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~~-~~D~i~-- 257 (359)
..++.+|||+++|.|.=+..++....+ ..++..|+ +.-+..+++ ..+|.+...|... .++ .||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 357789999999999999999998754 57899998 444433322 4667888888764 233 389998
Q ss_pred --ecc--hh-------ccCChhHH-------HHHHHHHHHhcCCCCCCceEEEE
Q 043623 258 --FKL--IF-------HDYDDEVC-------LKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 258 --~~~--vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
|+. ++ ..|+.+.+ .+||.++.+.||| ||+|+-.
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYS 241 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYS 241 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 432 22 22333322 5789999999999 8877544
No 231
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.64 E-value=0.0018 Score=48.35 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=47.1
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|...+++.|..+||+.+|+ +...+.+.|+.|...|++..... ++.|++++.
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-------~~~y~l~~~ 64 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-------NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-------CCceeecHH
Confidence 4567777654368999999999999 57999999999999999998742 467999874
No 232
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.63 E-value=0.0014 Score=62.02 Aligned_cols=51 Identities=20% Similarity=0.349 Sum_probs=42.5
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ 248 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~ 248 (359)
.+|||++||+|.++..+++... +++++|. +++++.+++ .++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988763 8999998 778877664 3478899998865
No 233
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.63 E-value=0.006 Score=56.11 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=61.7
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C-----
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S----- 249 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~----- 249 (359)
.+++..+. ..++..++|.-+|.|..+..++++.|+.+++++|. |.+++.+++ .+|++++.+++.+ .
T Consensus 10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 56666665 56678999999999999999999988899999999 778777654 4689999998875 1
Q ss_pred --CCCccEEEecchh
Q 043623 250 --IPSADAFLFKLIF 262 (359)
Q Consensus 250 --~~~~D~i~~~~vl 262 (359)
...+|.|++---+
T Consensus 88 ~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 88 LLVTKIDGILVDLGV 102 (305)
T ss_pred cCCCcccEEEEeccC
Confidence 1247777776543
No 234
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.011 Score=52.60 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=74.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechH-H----HhcCCC---CCCceEEeCCCCC-CCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPH-V----IADLPE---TDNLKFIAGDMNQ-SIP 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~----i~~a~~---~~rv~~~~~d~~~-~~~ 251 (359)
..|+..++ ..++.+|++-|.|+|.++..+++.- |.-+..-+|..+ - .+..++ .++|++...|... .++
T Consensus 95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 34566666 7899999999999999999999875 777888899833 2 222333 8999999999987 343
Q ss_pred ----CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 252 ----SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 252 ----~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
.+|+|++- ++.+. ..+-.+.+.||.+ ||+++-..+++
T Consensus 173 ~ks~~aDaVFLD-----lPaPw--~AiPha~~~lk~~--g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFLD-----LPAPW--EAIPHAAKILKDE--GGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEEc-----CCChh--hhhhhhHHHhhhc--CceEEeccHHH
Confidence 28998875 34332 3356666678872 56776655543
No 235
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.58 E-value=0.0036 Score=55.38 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC--CccEEEecchhcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP--SADAFLFKLIFHD 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~ 264 (359)
+.+.+|+|||||---++.......|+..++++|+ ...++.... ..+.++...|.....| .+|+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4579999999999999998888888999999999 556655442 5677888889988433 4999999999998
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+..+.. ..--++-+.++- -.++|.-+.
T Consensus 184 le~q~~-g~g~~ll~~~~~----~~~vVSfPt 210 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALRS----PHVVVSFPT 210 (251)
T ss_dssp HHHHST-THHHHHHHHSCE----SEEEEEEES
T ss_pred HHHHhc-chHHHHHHHhCC----CeEEEeccc
Confidence 765543 233334455542 355554444
No 236
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.58 E-value=0.0028 Score=51.60 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=41.6
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC
Q 043623 197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ 248 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~ 248 (359)
.++|||||.|.++..+++.+|+.+++++|. |.+.+.+++ ..+++++.....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 666665543 2457777766654
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.55 E-value=0.0012 Score=50.87 Aligned_cols=90 Identities=23% Similarity=0.338 Sum_probs=39.8
Q ss_pred EEEcCCchHHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCceEEeCCCCC---CCC--CccEEEecchhc
Q 043623 199 VEVGGGTGSFARIISEAFPSI---KCSVLEL-P---HVIADLPE---TDNLKFIAGDMNQ---SIP--SADAFLFKLIFH 263 (359)
Q Consensus 199 lDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~i~~a~~---~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh 263 (359)
||||+..|..+..+++..+.. +++++|. + ..-+..++ .++++++.++..+ .++ .+|+++.-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988876554 5899998 4 23333332 6789999999876 232 589888775 22
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
..+.+..-+..+.+.|+| ||.|++-|
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 335567789999999999 77666544
No 238
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.55 E-value=0.0062 Score=51.86 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=61.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIK---------CSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-- 251 (359)
.+++..|+|-=||+|.++++.+...++.. +++.|+ +.+++.++. ...|.+...|+.+ +.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45678999999999999999888777766 899999 777766543 5678999999998 633
Q ss_pred CccEEEecchhcc-CCh-hHH----HHHHHHHHHhcCC
Q 043623 252 SADAFLFKLIFHD-YDD-EVC----LKLLKNCREAVAS 283 (359)
Q Consensus 252 ~~D~i~~~~vlh~-~~d-~~~----~~iL~~~~~~L~p 283 (359)
.+|+|++.--.-. ... .+. .++++.+.+.+++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 4899988754422 222 122 2456777778876
No 239
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.54 E-value=0.0033 Score=44.35 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=46.5
Q ss_pred HHcCcccccccCCC-CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 36 VELGIPDIIHKRGR-PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 36 ~~lglf~~L~~~~~-~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
.+-.|+..|...|+ +.|+.+||+.+|+ +...+++.|..|...|+|...+. .++.|+++.
T Consensus 7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~------~~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGG------TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC------CCCceEeec
Confidence 44556777776544 3999999999999 57899999999999999998752 136788764
No 240
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.51 E-value=0.0017 Score=61.75 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=42.1
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ 248 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~ 248 (359)
.+|||++||+|.++..+++... +++++|. +.+++.+++ .++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988754 7999998 777776654 3478999998865
No 241
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.49 E-value=0.0089 Score=55.08 Aligned_cols=146 Identities=17% Similarity=0.225 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCceEEeCCCCC-CCC------Cc---
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFP-SIKCSVLELPHVIADLPE---------TDNLKFIAGDMNQ-SIP------SA--- 253 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~i~~a~~---------~~rv~~~~~d~~~-~~~------~~--- 253 (359)
+...|+-+|||-=.-+-.+- .| ++++.-+|+|++++.-++ ..+++++..|+++ +++ +|
T Consensus 92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 36899999999544443332 23 578888899999875332 3489999999995 544 12
Q ss_pred --cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee-cCCCCCCch-HHHHHHHhhhhh-hhhcCCcccCH
Q 043623 254 --DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV-VNEKKDKPE-ITEAKLLYDALM-MTCVPGIERSE 328 (359)
Q Consensus 254 --D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~-~~~~~~~~~-~~~~~~~~~~~~-~~~~~g~~~t~ 328 (359)
=++++-.++-+++.++..++|.+|...++| |..+ +.+.. ......... ............ .....-.....
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 245 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRV-AFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDP 245 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceE-EEeccccHHHHhcccchhhhhhccccccccccceeccCCH
Confidence 467888999999999999999999999998 5544 44442 111111100 000000000000 00011122368
Q ss_pred HHHHHHHHhcCCceeeE
Q 043623 329 KEWERLFFDAGFTSYKI 345 (359)
Q Consensus 329 ~e~~~ll~~aGf~~~~~ 345 (359)
.+++.++.+.||.....
T Consensus 246 ~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 246 AEIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHHhcCEEEEec
Confidence 99999999999998776
No 242
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.45 E-value=0.019 Score=49.36 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCceEEeCCCCC---CCC--CccEEEecchh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-----TDNLKFIAGDMNQ---SIP--SADAFLFKLIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-----~~rv~~~~~d~~~---~~~--~~D~i~~~~vl 262 (359)
.++.+||.||-|-|.....+.++.|..+++.---|.+.++.+. .++|.+..|--.+ .++ .||-|+.--.=
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5789999999999999999999999877776545888877664 6788887764443 344 38988766431
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
- .-++...+.+.+.+.||| +|.+-.+...
T Consensus 180 e--~yEdl~~~hqh~~rLLkP---~gv~SyfNg~ 208 (271)
T KOG1709|consen 180 E--LYEDLRHFHQHVVRLLKP---EGVFSYFNGL 208 (271)
T ss_pred h--HHHHHHHHHHHHhhhcCC---CceEEEecCc
Confidence 1 125677889999999999 8877665544
No 243
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.38 E-value=0.0085 Score=55.72 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=65.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC--CCC--
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEA-------FPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ--SIP-- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~--~~~-- 251 (359)
..+..+|+|-.||+|.++.++.+. .+..++.|+|+ +.++..++. .....+..+|.+. ...
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345678999999999999998874 47789999999 555544331 3334588889876 232
Q ss_pred -CccEEEecchh--ccCCh-----------------hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 252 -SADAFLFKLIF--HDYDD-----------------EVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 252 -~~D~i~~~~vl--h~~~d-----------------~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.||+|+++--+ ..|.+ ..-..++..+.+.|++ ||++.++=+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence 49999987433 21111 1112478889999999 898766543
No 244
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.37 E-value=0.019 Score=53.52 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CC-CCccEEEecch
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SI-PSADAFLFKLI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~-~~~D~i~~~~v 261 (359)
..+.+|||.=+|.|.+++.+++...- +++.+|+ |.+++.+++ .++|+.+.||..+ +. +.||-|+|...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 35899999999999999999997543 4999999 877765553 5668999999988 33 45999999875
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
- .+.+++..+.+.+++ ||.+...+....+.
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPEDD 295 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchhh
Confidence 3 234678888888998 88888887765554
No 245
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.33 E-value=0.012 Score=50.82 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCchHHHH---HHHHHC-CCCeEEEeech--HHHhcCCC----CCCceEEeCCCCCC-----C------CC
Q 043623 194 GLSSLVEVGGGTGSFAR---IISEAF-PSIKCSVLELP--HVIADLPE----TDNLKFIAGDMNQS-----I------PS 252 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~---~l~~~~-p~~~~~~~D~~--~~i~~a~~----~~rv~~~~~d~~~~-----~------~~ 252 (359)
++..|+++|--.|+-+. .+++.. ++.+++++|+. ..-..+.+ .+||+++.||-.++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 36899999966665555 445555 78899999982 22222323 59999999998762 1 11
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
..+|+.- .=|.+.. +.+.|+.....+++ |+.++|-|....
T Consensus 112 ~vlVilD-s~H~~~h--vl~eL~~y~plv~~---G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVILD-SSHTHEH--VLAELEAYAPLVSP---GSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEES-S----SS--HHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred ceEEEEC-CCccHHH--HHHHHHHhCccCCC---CCEEEEEecccc
Confidence 3344443 3333333 56778889999999 888888777543
No 246
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.33 E-value=0.007 Score=55.24 Aligned_cols=98 Identities=21% Similarity=0.361 Sum_probs=72.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCCC----------------
Q 043623 195 LSSLVEVGGGTGSFARIISEAF--------------------PSIKCSVLEL---PHVIADLPE---------------- 235 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~i~~a~~---------------- 235 (359)
..+||-||||.|.-..+++..+ +.++++.+|+ ..++.....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999998777776654 2368999998 345543211
Q ss_pred -------CCCceEEeCCCCC-CC---------CCccEEEecchhcc---CChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 236 -------TDNLKFIAGDMNQ-SI---------PSADAFLFKLIFHD---YDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 236 -------~~rv~~~~~d~~~-~~---------~~~D~i~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.-+++|...|++. .. +..++|.+.++++- -+..+..++|.++-..++| |..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 2357889999987 22 13688888877754 2566678999999999999 888889875
No 247
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.023 Score=47.79 Aligned_cols=97 Identities=16% Similarity=0.277 Sum_probs=59.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeC-CCCCC---------CC--CccEEEe
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAG-DMNQS---------IP--SADAFLF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~-d~~~~---------~~--~~D~i~~ 258 (359)
+++..+|||+||..|.++.-..++. |+..+.++|+-.... ...+.++.+ |+.+| .| ..|+|++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 5788999999999999998766654 999999999843322 233444444 44432 23 2677765
Q ss_pred cch--------h-ccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 259 KLI--------F-HDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 259 ~~v--------l-h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
-.. + |...-+-|..+|.-+...++| +|.+++--+
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~w 185 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKLW 185 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEEe
Confidence 432 1 111233344455555556677 776665433
No 248
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.31 E-value=0.025 Score=58.58 Aligned_cols=100 Identities=12% Similarity=0.163 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC----C--------------------------------------CCeEEEeec-hHH
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAF----P--------------------------------------SIKCSVLEL-PHV 229 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~----p--------------------------------------~~~~~~~D~-~~~ 229 (359)
.+...++|-.||+|.++++.+... | ..+++++|+ +.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 456899999999999999876531 1 236899998 778
Q ss_pred HhcCCC-------CCCceEEeCCCCC-CCC----CccEEEecchhc-cCC-hhHHHHHHHHHHHhcC---CCCCCceEEE
Q 043623 230 IADLPE-------TDNLKFIAGDMNQ-SIP----SADAFLFKLIFH-DYD-DEVCLKLLKNCREAVA---SSDGREKVII 292 (359)
Q Consensus 230 i~~a~~-------~~rv~~~~~d~~~-~~~----~~D~i~~~~vlh-~~~-d~~~~~iL~~~~~~L~---p~~~gG~lli 292 (359)
++.++. .++|++..+|+.+ +.+ .+|+|+++--.- .+. ..+...+.+.+.+.++ + |+++++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~---g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG---GWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC---CCeEEE
Confidence 876664 5678999999987 322 399998884331 222 2334455555555554 6 788776
Q ss_pred Eee
Q 043623 293 VDI 295 (359)
Q Consensus 293 ~e~ 295 (359)
+..
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 543
No 249
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.25 E-value=0.0072 Score=51.65 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-------CCCccEEEe
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-------IPSADAFLF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-------~~~~D~i~~ 258 (359)
.+.++||+=||||.++.+.+.+... +++.+|. +..+..+++ .++++++..|.+.. ...||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 4789999999999999998888644 7999998 555554443 45788999997651 124999988
Q ss_pred cchhccCChhHHHHHHHHHH--HhcCCCCCCceEEEEeeecC
Q 043623 259 KLIFHDYDDEVCLKLLKNCR--EAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 259 ~~vlh~~~d~~~~~iL~~~~--~~L~p~~~gG~lli~e~~~~ 298 (359)
-=-. ..... ..+++..+. ..|++ +.++|+|....
T Consensus 121 DPPY-~~~~~-~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY-AKGLY-YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --ST-TSCHH-HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCc-ccchH-HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 7433 33321 245666665 67888 56778887655
No 250
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.073 Score=49.52 Aligned_cols=99 Identities=10% Similarity=0.117 Sum_probs=73.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeC-CCCC-CCCC--ccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAG-DMNQ-SIPS--ADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~-d~~~-~~~~--~D~i~~~~ 260 (359)
..++..|||==||||.++++..-. +++++|.|+ ..+++.++. -....+... |+.. |+++ +|+|++--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456789999999999999998776 779999999 568887764 133434444 8887 7775 99998753
Q ss_pred hhcc------CC-hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 261 IFHD------YD-DEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 261 vlh~------~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
-.-- .. ++-..++|..+++.|++ ||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 2211 11 33456889999999999 898887655
No 251
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.23 E-value=0.014 Score=58.41 Aligned_cols=67 Identities=7% Similarity=0.093 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC--------CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-------C-C
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPS--------IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-------S-I 250 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-------~-~ 250 (359)
...+|+|.|||+|.++..++++.+. ..++++|+ +.++..++. ...+.+...|+.. . .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 56789998 556554432 1234555555443 1 1
Q ss_pred CCccEEEecc
Q 043623 251 PSADAFLFKL 260 (359)
Q Consensus 251 ~~~D~i~~~~ 260 (359)
+.||+|+.+=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 2499999873
No 252
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.04 E-value=0.0053 Score=55.09 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=47.1
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|...+.+.+..|||+++|+| ..-+.|+|..|+..|++.+++. ++.|++++.
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glp---ksT~~RlL~tL~~~G~v~~d~~-------~g~Y~Lg~~ 63 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLP---KSTVHRLLQTLVELGYVEQDPE-------DGRYRLGPR 63 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcC---HHHHHHHHHHHHHCCCEEEcCC-------CCcEeehHH
Confidence 45677776533456799999999994 6899999999999999999973 468999985
No 253
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=95.99 E-value=0.0036 Score=40.61 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=38.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST 85 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 85 (359)
++.|...|.+ +|.++.|||+.+++ ++..+.+-|+.|...|+++.
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 4566777876 89999999999999 68999999999999999874
No 254
>PRK11569 transcriptional repressor IclR; Provisional
Probab=95.87 E-value=0.0073 Score=55.17 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=47.5
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|.+.+++.|..|||+.+|+ +..-+.|+|..|...|+|.+++. .+.|++++..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-------~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-------LGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCeEecCHHH
Confidence 4456666554478999999999999 46899999999999999998753 5889998753
No 255
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=95.86 E-value=0.0046 Score=42.56 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=44.3
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.+|.--.++.|+..|.. ++|.|+.+||+.+|+ ++..+.+-|+.|...|+|+...
T Consensus 5 ~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 5 KALSDPTRLRILRLLAS-NGPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 44455567778888833 389999999999999 5789999999999999999875
No 256
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=95.79 E-value=0.0086 Score=54.61 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=46.8
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|..++++.|+.|||+++|++ ...+.|+|..|...|+|.+++. .+.|++++.
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lglp---kStv~RlL~tL~~~G~l~~~~~-------~~~Y~lG~~ 84 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDLP---LSTTFRLLKVLQAADFVYQDSQ-------LGWWHIGLG 84 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEEcCC-------CCeEEecHH
Confidence 44566665544689999999999994 6899999999999999998753 578999974
No 257
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=95.78 E-value=0.0083 Score=53.94 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=46.6
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|..+++|.|+.|||+++|++ ..-+.|+|..|...|+|.++ ++.|++++.
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lglp---ksT~~RlL~tL~~~G~l~~~---------~~~Y~lG~~ 66 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGLT---RAAARRFLLTLVELGYVTSD---------GRLFWLTPR 66 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEeC---------CCEEEecHH
Confidence 45667776545789999999999994 68999999999999999976 378999985
No 258
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.73 E-value=0.03 Score=53.36 Aligned_cols=90 Identities=10% Similarity=0.158 Sum_probs=68.1
Q ss_pred CeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--CC--CCccEEEecchhc
Q 043623 196 SSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--SI--PSADAFLFKLIFH 263 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~~--~~~D~i~~~~vlh 263 (359)
.+|||.-||+|..+++++.+.++ -++++.|+ |++++.+++ ..+++++.+|... .. ..||+|.+-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 58999999999999999998654 37999999 777766553 3457888888876 21 2499998854 3
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
..+ ..++..+.+.+++ ||.|.|.-
T Consensus 124 Gs~----~~fld~al~~~~~---~glL~vTa 147 (374)
T TIGR00308 124 GTP----APFVDSAIQASAE---RGLLLVTA 147 (374)
T ss_pred CCc----HHHHHHHHHhccc---CCEEEEEe
Confidence 222 2578888888888 88888874
No 259
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=95.69 E-value=0.016 Score=42.61 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=38.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
++.|.++||+++++ ++..++++++.|...|+++... |-+|.|.++..
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~------G~~GGy~L~~~ 70 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSR------GRGGGYRLARP 70 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET------STTSEEEESS-
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecC------CCCCceeecCC
Confidence 56999999999999 5899999999999999998774 12478988764
No 260
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=95.64 E-value=0.056 Score=37.52 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=39.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
.+.|..+||+.+|+ +...+.+.|+.|...|++.... .+.|.++|
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~--------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG--------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC--------CCeEEeCC
Confidence 68999999999999 6899999999999999999885 36788764
No 261
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.069 Score=48.61 Aligned_cols=146 Identities=13% Similarity=0.184 Sum_probs=100.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEeechHHHhcCC----C------------------------CCCceE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF--PSIKCSVLELPHVIADLP----E------------------------TDNLKF 241 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~i~~a~----~------------------------~~rv~~ 241 (359)
......|+.+|||.-.+...+...+ +.++++-+|.|+++.+-- + +++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999999887 788999999987754311 0 344455
Q ss_pred EeCCCCC--CC----------CC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH
Q 043623 242 IAGDMNQ--SI----------PS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE 308 (359)
Q Consensus 242 ~~~d~~~--~~----------~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~ 308 (359)
+..|..+ .+ .+ .=+++.--+|..+.+++...+++-+...++. +.+++.|.+.+....
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~F------ 234 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRF------ 234 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChH------
Confidence 5555553 10 01 3455666788889999999999999999875 889999999855421
Q ss_pred HHHHhhhhhhhh---cC--CcccCHHHHHHHHHhcCCceeeEEec
Q 043623 309 AKLLYDALMMTC---VP--GIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 309 ~~~~~~~~~~~~---~~--g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
...+--++... .. -...|.+..++=|.++||..+.+..+
T Consensus 235 -g~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 235 -GKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred -HHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 11111111100 01 12347888888899999999888765
No 262
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.58 E-value=0.011 Score=53.77 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=49.1
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.|++.|..++++.|..|||+++|+ +...+.|+|+.|...|+|.++.. ++.|++++....|.
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-------~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-------DDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-------CCcEEEcHHHHHHH
Confidence 4566666554467999999999999 57899999999999999998752 47899998644333
No 263
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.56 E-value=0.039 Score=48.08 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=71.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHh-------cCCCCCCceEEeCCCCCCC---------CCc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIA-------DLPETDNLKFIAGDMNQSI---------PSA 253 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~-------~a~~~~rv~~~~~d~~~~~---------~~~ 253 (359)
+-++++++|||.=||.-+..++.+.|. .+++.+|+ ++..+ .|.-...|+++.++..+.+ ..|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 345799999999999999999998875 58999998 33333 3333788999999887621 238
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
|.++.- +|.+. -...+.++-+.+++ ||.|++-...++.
T Consensus 151 DfaFvD----adK~n-Y~~y~e~~l~Llr~---GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVD----ADKDN-YSNYYERLLRLLRV---GGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEc----cchHH-HHHHHHHHHhhccc---ccEEEEeccccCC
Confidence 888765 34444 34889999999999 6655554434444
No 264
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.56 E-value=0.0081 Score=43.51 Aligned_cols=57 Identities=21% Similarity=0.377 Sum_probs=42.6
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.|+..+.. ++.+..+|+..+++ +...+.+.|+.|...|++... ++.|++|+.|.-+.
T Consensus 10 ~IL~~l~~--~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~---------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 10 DILKILSK--GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK---------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHHH-T--T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE---------TTEEEE-HHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC---------CCEEEECccHHHHH
Confidence 34455543 78999999999999 689999999999999999775 48999999988443
No 265
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=95.47 E-value=0.011 Score=41.41 Aligned_cols=59 Identities=17% Similarity=0.356 Sum_probs=45.4
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCC--CcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPN--KRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~--~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
|++.|.++++|++..+|++.+....- ++..+++.|++|...|++.+.+ .+.+.+|+.|.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g--------~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG--------RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC--------CcccccCHHHH
Confidence 45667666799999999999866421 3488999999999999877665 45667887654
No 266
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.47 E-value=0.013 Score=52.91 Aligned_cols=57 Identities=19% Similarity=0.397 Sum_probs=46.5
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|..+ ++.|+.|||+++|++ ..-+.|+|+.|...|+|.++.. ++.|++++..
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl~---kstv~Rll~tL~~~G~l~~~~~-------~~~Y~lG~~~ 73 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMMS---KSTVYRFLQTMKTLGYVAQEGE-------SEKYSLTLKL 73 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEEcCC-------CCcEEecHHH
Confidence 3455556553 689999999999994 6899999999999999998742 5789999853
No 267
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.40 E-value=0.028 Score=53.64 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCCC----CC---CccEEE
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQS----IP---SADAFL 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~~----~~---~~D~i~ 257 (359)
.+++|||+=|=||.++...+..... ++|.+|+ ..+++.+++ .+++.|+.+|.++- .. .||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~-~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGAS-EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCC-ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3899999999999999999886332 8999999 567776654 57789999999972 11 499998
Q ss_pred ecc-hhcc-----CC-hhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 258 FKL-IFHD-----YD-DEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 258 ~~~-vlh~-----~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+-= .+-. |+ ..+-..++..+.+.|+| ||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 742 1100 11 22245788899999999 8888876553
No 268
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=95.38 E-value=0.037 Score=46.34 Aligned_cols=61 Identities=15% Similarity=0.323 Sum_probs=45.4
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
.+|++.+.+. |. .. ++++|+++||+++++ ++..+.++|..|...|||.... |.+|.|++..
T Consensus 9 yAl~~l~~lA-~~--~~-~~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~r------G~~GGy~Lar 69 (164)
T PRK10857 9 YAVTAMLDVA-LN--SE-AGPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVR------GPGGGYLLGK 69 (164)
T ss_pred HHHHHHHHHH-hC--CC-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC------CCCCCeeccC
Confidence 3455555554 21 21 368999999999999 4799999999999999999763 1246788864
No 269
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=95.37 E-value=0.017 Score=45.32 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 27 MSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 27 ~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
-.+.+|.--.++.|+..|... ++.++.+|++.+++ .+..+.+-|+.|...|+|..... |-.-.|++.+
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r~-----Gr~~~Y~l~~ 75 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRKQ-----GKWVHYRLSP 75 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE-----cCEEEEEECc
Confidence 445666677788888888642 68999999999999 57899999999999999998862 1122477765
No 270
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.1 Score=45.80 Aligned_cols=148 Identities=8% Similarity=0.085 Sum_probs=90.8
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCceEEeC-CCCCC----CC-Ccc
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL--PHVIADLPETDNLKFIAG-DMNQS----IP-SAD 254 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~i~~a~~~~rv~~~~~-d~~~~----~~-~~D 254 (359)
..++.++ ...++..+||||.-||.++..++++... +++++|. .+..-..+..+||..+.. |+..- +. ..|
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~gAk-~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRGAK-HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcCCc-EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 4455554 2356789999999999999999997543 7899998 455556666788876655 44331 11 256
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE-EeeecCCCCCCchHHHHHHHhhhh-hhhhcCCcccCHHHHH
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII-VDIVVNEKKDKPEITEAKLLYDAL-MMTCVPGIERSEKEWE 332 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli-~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~e~~ 332 (359)
++++--.+ -....+|..+...++| ++-++. +-+-..-.. ...... ..........-..++.
T Consensus 147 ~~v~DvSF-----ISL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr---------~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 147 LIVIDVSF-----ISLKLILPALLLLLKD---GGDLVLLVKPQFEAGR---------EQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred eEEEEeeh-----hhHHHHHHHHHHhcCC---CceEEEEecchhhhhh---------hhcCcCceecCcchHHHHHHHHH
Confidence 66665433 2245789999999998 665543 222111110 000000 0000112223467889
Q ss_pred HHHHhcCCceeeEEecC
Q 043623 333 RLFFDAGFTSYKITPLL 349 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~ 349 (359)
+++++.||++..+.+.+
T Consensus 210 ~~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 210 NFAKELGFQVKGLIKSP 226 (245)
T ss_pred HHHhhcCcEEeeeEccC
Confidence 99999999999988763
No 271
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.23 E-value=0.033 Score=51.30 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=49.1
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ 248 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~ 248 (359)
.+++..+. ..++..++|.--|.|+++..+++++|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 10 ~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 10 KEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 56677665 56778999999999999999999999999999999 788866543 6889999888765
No 272
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=0.017 Score=47.09 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=36.7
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+.|+|.+.+++.|+.-++-...++.+++.||| ||+|-|.-
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAv 86 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAV 86 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEc
Confidence 49999999999999988889999999999999 99998863
No 273
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=95.18 E-value=0.017 Score=40.40 Aligned_cols=53 Identities=23% Similarity=0.472 Sum_probs=38.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS 105 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+++.+..+||+.+++ +...+.+.++.|...|+|++.... .|.-...|++|+.|
T Consensus 16 ~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~--~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 16 DGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDP--HDKRSKRYRLTPAG 68 (68)
T ss_dssp TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEES--SCTTSEEEEE-HHH
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCC--CcCCeeEEEeCCCC
Confidence 389999999999999 689999999999999999877520 11112468888754
No 274
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.15 E-value=0.039 Score=35.47 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
-+.|..+||+.+++ +...+.+.|+.|...|++....
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~~ 42 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC
Confidence 47899999999999 6799999999999999998774
No 275
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.09 E-value=0.29 Score=43.21 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC-----CccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP-----SADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~-----~~D~i~~~~vl 262 (359)
.+++||=||-.- ..+++++...+..+++++|+ +..++-.++ .-+|+.+..|+..++| .||+++.-=.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 468999999544 34444555555669999999 445544332 4459999999999766 3999987642
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS 342 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 342 (359)
++.+.+.-++.+..++||. +|+..++ -....+. .. . ...++++.+.+.||.+
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~--~g~~gy~-~~~~~~~--s~---~------------------~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG--EGCAGYF-GFTHKEA--SP---D------------------KWLEVQRFLLEMGLVI 173 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S--TT-EEEE-EE-TTT----H---H------------------HHHHHHHHHHTS--EE
T ss_pred --CCHHHHHHHHHHHHHHhCC--CCceEEE-EEecCcC--cH---H------------------HHHHHHHHHHHCCcCH
Confidence 4567777899999999987 2444333 2222111 00 0 1234567777888888
Q ss_pred eeEEec
Q 043623 343 YKITPL 348 (359)
Q Consensus 343 ~~~~~~ 348 (359)
.++.+-
T Consensus 174 ~dii~~ 179 (243)
T PF01861_consen 174 TDIIPD 179 (243)
T ss_dssp EEEEEE
T ss_pred HHHHhh
Confidence 777664
No 276
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=94.95 E-value=0.0084 Score=42.19 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=39.1
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+..++..|-.. ++.|+++||+.+|+ +...+.+.|+-|...|++...+
T Consensus 10 E~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 33445555332 89999999999999 6899999999999999999986
No 277
>PHA00738 putative HTH transcription regulator
Probab=94.86 E-value=0.028 Score=42.86 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=48.5
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS 105 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.++.|+..|.. +++.++.+|++.+++ ++..+.+-|+.|...|+|..... |-.-.|++.+..
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK~-----Gr~vyY~Ln~~~ 73 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYKE-----GRTLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEEE-----CCEEEEEECCCc
Confidence 46778888876 347999999999999 78999999999999999998863 112357777643
No 278
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=94.86 E-value=0.02 Score=37.16 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=36.5
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCcee
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFS 84 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~ 84 (359)
+..|+..|.+. ++.|..|||+.+|+ +...+.+.|+-|...|+++
T Consensus 5 ~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 45677778774 67999999999999 6899999999999999974
No 279
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.83 E-value=0.45 Score=43.73 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=40.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeC----CCCCCC--C--CccEE
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAG----DMNQSI--P--SADAF 256 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~----d~~~~~--~--~~D~i 256 (359)
...++||||+|....=--|..+..++++++.|+ +..++.|++ .++|+++.. +++... + .||..
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 357899999999855333333334899999999 667766653 678888655 344422 1 39999
Q ss_pred EecchhccCChh
Q 043623 257 LFKLIFHDYDDE 268 (359)
Q Consensus 257 ~~~~vlh~~~d~ 268 (359)
+|+--+|.-.++
T Consensus 182 mCNPPFy~s~~e 193 (299)
T PF05971_consen 182 MCNPPFYSSQEE 193 (299)
T ss_dssp EE-----SS---
T ss_pred ecCCccccChhh
Confidence 988777764443
No 280
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.72 E-value=1.2 Score=42.42 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCchHHHHHHHH--------H-------CCCCeEEEeechH-----HHhcCCC---------------CCC
Q 043623 194 GLSSLVEVGGGTGSFARIISE--------A-------FPSIKCSVLELPH-----VIADLPE---------------TDN 238 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~-----~i~~a~~---------------~~r 238 (359)
+..+|+|+|||+|.++..+.. + -|.+++..=|+|. ....... ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 367899999999977655422 2 2567888888752 1111110 112
Q ss_pred ---ceEEeCCCCC-CCC--CccEEEecchhccCC
Q 043623 239 ---LKFIAGDMNQ-SIP--SADAFLFKLIFHDYD 266 (359)
Q Consensus 239 ---v~~~~~d~~~-~~~--~~D~i~~~~vlh~~~ 266 (359)
+.-+.|.|.. -+| +.+++++++.||-.+
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 2235578887 466 389999999998654
No 281
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=94.69 E-value=0.032 Score=38.34 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=35.6
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|.+.|....+|.+..|||+.+|+ +...++++|..|...|.+...+
T Consensus 5 Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 5 ILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp HHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 34444442389999999999999 6899999999999999998764
No 282
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.61 E-value=0.3 Score=45.62 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=65.1
Q ss_pred cCCCCeEEEEcC-CchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCC---CCCCCCC-ccEEEecchhccC
Q 043623 192 FDGLSSLVEVGG-GTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGD---MNQSIPS-ADAFLFKLIFHDY 265 (359)
Q Consensus 192 ~~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d---~~~~~~~-~D~i~~~~vlh~~ 265 (359)
..++.+|+-+|. |-|.++..++++.- .+++++|. ++-.+.+++-..-.++... ..+.... ||+++..-.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---- 238 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---- 238 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence 677889888884 56789999999766 89999999 5666666664444455433 2222332 898887753
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
+ ..+....+.|++ ||+++++-...
T Consensus 239 -~----~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 239 -P----ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred -h----hhHHHHHHHHhc---CCEEEEECCCC
Confidence 1 236667778899 99999987763
No 283
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.54 E-value=0.056 Score=46.13 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=61.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCceEEeCCCCC-CC----------CC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE---------TDNLKFIAGDMNQ-SI----------PS 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~---------~~rv~~~~~d~~~-~~----------~~ 252 (359)
++...|+.+|||-=.....+....++++++-+|+|++++.-++ ..+.+++..|+.+ .+ ++
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 3445999999999999999998878899999999998875443 2346789999996 21 11
Q ss_pred -ccEEEecchhccCChhHHHHHHHHH
Q 043623 253 -ADAFLFKLIFHDYDDEVCLKLLKNC 277 (359)
Q Consensus 253 -~D~i~~~~vlh~~~d~~~~~iL~~~ 277 (359)
.-++++-.++.+++.+++..+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 4578888999999999988888876
No 284
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=94.41 E-value=0.025 Score=39.95 Aligned_cols=44 Identities=20% Similarity=0.408 Sum_probs=36.0
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|.+.|.+. +.+|..|||..+++ ++..++.+|+.|+..|.+.+..
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 34556654 78999999999999 6899999999999999999885
No 285
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.37 E-value=0.2 Score=42.67 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCceEEeCCCCC-----CCC-CccEEEec
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP-------ETDNLKFIAGDMNQ-----SIP-SADAFLFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~-------~~~rv~~~~~d~~~-----~~~-~~D~i~~~ 259 (359)
.+.++||+=+|+|.++.+-+.+... +++.+|. ..+...++ ...+++++..|... ... .||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 4689999999999999999888654 7888887 44443333 25788888888874 111 39999987
Q ss_pred chhcc-CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 260 LIFHD-YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 260 ~vlh~-~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
=-++. .-+.+..-++-.-...|+| +.++++|....
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 66651 1121222222224567998 45666666544
No 286
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=94.34 E-value=0.055 Score=44.15 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=44.3
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+++.++.+||+.+++ ++..+.+.++.|...|+|.+.. ...|++|+.|..+.
T Consensus 20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~--------~~~i~LT~~G~~~a 70 (142)
T PRK03902 20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTPKGKKIG 70 (142)
T ss_pred CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec--------CceEEECHHHHHHH
Confidence 378999999999999 6799999999999999999764 46799999887554
No 287
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.33 E-value=0.093 Score=34.85 Aligned_cols=42 Identities=33% Similarity=0.442 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHH
Q 043623 29 SIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLL 77 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L 77 (359)
-.+|.+|+++|-||. + ...|.++||+.+|+ ++..+...||..
T Consensus 6 ~e~L~~A~~~GYfd~-P---R~~tl~elA~~lgi---s~st~~~~LRra 47 (53)
T PF04967_consen 6 REILKAAYELGYFDV-P---RRITLEELAEELGI---SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHcCCCCC-C---CcCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence 468999999999997 3 57999999999999 456666666543
No 288
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=94.25 E-value=0.26 Score=40.23 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=48.6
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+.... .|.-.-.+.+|+.|+.+.
T Consensus 43 ~~vL~~l~~~-~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~~--~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 43 FKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNP--NDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCc--ccCCeeEeEEChhHHHHH
Confidence 3446666543 68999999999999 689999999999999999988521 000112467788777554
No 289
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=94.14 E-value=0.073 Score=43.02 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=39.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
++.|.++||+++++ ++..++++|+.|...|++.... |.+|.|+++..
T Consensus 24 ~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~------G~~Ggy~l~~~ 70 (135)
T TIGR02010 24 GPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVR------GPGGGYQLGRP 70 (135)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEe------CCCCCEeccCC
Confidence 68999999999999 5799999999999999998753 11467888753
No 290
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=94.12 E-value=0.019 Score=41.93 Aligned_cols=66 Identities=21% Similarity=0.372 Sum_probs=47.6
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++++|...|... +..+..+|.+.+|+ +...+.+.|+.|...|+++....... ..-.-.|++|+.|+
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~~-~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFEG-RRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-SS-S--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEeccC-CCCeEEEEECHHHH
Confidence 467777788663 68999999999999 57999999999999999998753110 00012588998876
No 291
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.10 E-value=0.045 Score=41.83 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL 226 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 226 (359)
+....+|||||+|.+.--|... +.++.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4678999999999988887775 567888885
No 292
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.89 E-value=0.12 Score=47.30 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCCC------CCCccEEEe
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQS------IPSADAFLF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~~------~~~~D~i~~ 258 (359)
.+++|||+=|=||.++...+... -.+++.+|. ..+++.+++ .++++++..|+++. ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46899999999999999877643 347999999 567766653 47899999999862 124999987
Q ss_pred cch-h--ccCC-hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 259 KLI-F--HDYD-DEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 259 ~~v-l--h~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
-=- + ..+. ..+-.++++.+.+.|+| ||.|+.+..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 411 0 1111 12345789999999999 887765444
No 293
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.88 E-value=0.17 Score=49.30 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hH----HHhcCCCCCCceEEeCCCCCC---CC-CccEEEecchhc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PH----VIADLPETDNLKFIAGDMNQS---IP-SADAFLFKLIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~i~~a~~~~rv~~~~~d~~~~---~~-~~D~i~~~~vlh 263 (359)
.....|+|...|.|.|+.+|.+. | +.++.. |. .+...-+ ....-+.+|-.++ +| .||++-..+++.
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd-RGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD-RGLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh-cccchhccchhhccCCCCcchhheehhhhhh
Confidence 45678999999999999999764 3 444444 22 1211111 1122244555554 44 399999999997
Q ss_pred cCC-hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623 264 DYD-DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS 342 (359)
Q Consensus 264 ~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 342 (359)
.+. .-+...+|-++-|.|+| +|.++|-|..- ...+++.++..-.++.
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD~~~-----------------------------vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIRDTVD-----------------------------VLEKVKKIAKSLRWEV 486 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEeccHH-----------------------------HHHHHHHHHHhCcceE
Confidence 764 33456789999999999 89988865420 2455667777777765
Q ss_pred eeEEecCC---cceEEEEEC
Q 043623 343 YKITPLLG---LRSFIEVYL 359 (359)
Q Consensus 343 ~~~~~~~~---~~~~i~~~~ 359 (359)
..+..-.+ ...++.++|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 43332232 356777665
No 294
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=93.75 E-value=0.072 Score=42.07 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=38.5
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV 88 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 88 (359)
.++-+|-+.++|.|+++||+.++. +...+.+-|+-|...|++.+...
T Consensus 31 ~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 31 EVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 344444312389999999999999 67899999999999999999963
No 295
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=93.71 E-value=0.079 Score=35.82 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=38.8
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|++.|... +..|+++||+.+++ ++.-++|=|..|...|++.+..
T Consensus 5 Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 5 ILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 45666654 79999999999999 6799999999999999999986
No 296
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.70 E-value=0.035 Score=48.01 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ 248 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~ 248 (359)
....|+|.-||-|+.++.++.++| .++.+|+ |.-+..|+. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 457899999999999999999987 5888888 666666653 6799999999987
No 297
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=93.68 E-value=0.19 Score=39.42 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=52.1
Q ss_pred HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
..++.++..|... ++.|..+||+.+++ +...+.+.++-|...|+|.+.... .|.-.-.+.+|+.|+.+..
T Consensus 28 ~~q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~--~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 28 EQQWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKAS--NDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCC--CCCCeeEEEECHhHHHHHH
Confidence 3345567777654 78999999999999 578999999999999999987421 0111136899998885554
No 298
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.66 E-value=0.77 Score=43.91 Aligned_cols=111 Identities=16% Similarity=0.229 Sum_probs=64.5
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHH----HHHHC---CCCeEEEeechH-----HHhcCCC-------CCCc--e
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARI----ISEAF---PSIKCSVLELPH-----VIADLPE-------TDNL--K 240 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~----l~~~~---p~~~~~~~D~~~-----~i~~a~~-------~~rv--~ 240 (359)
..|++++. -.+..+|+|+|.|.|.-=.. |+.+. |.+++|+++.|. .++.+.+ .-+| +
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 67788876 55678999999999954444 44432 788999999832 2222211 2233 3
Q ss_pred EEeC--CCCCCC--------C-CccEEEecchhccCChh------HHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 241 FIAG--DMNQSI--------P-SADAFLFKLIFHDYDDE------VCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 241 ~~~~--d~~~~~--------~-~~D~i~~~~vlh~~~d~------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
|... +-.+.. + ++=+|-+...||++.++ ....+|+.++ .|+| -.++++|...+.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea~~ 248 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEADH 248 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecCCC
Confidence 3331 211111 1 23344455667887632 2345777665 6899 466777776554
No 299
>PRK11050 manganese transport regulator MntR; Provisional
Probab=93.64 E-value=0.37 Score=39.75 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=46.8
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
|...+.. +++.+..+||+.+++ ++..+.++++.|...|++.... ...+++|+.|..+.
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~--------~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP--------YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec--------CCceEECchHHHHH
Confidence 4445544 368999999999999 6899999999999999998865 35688898876544
No 300
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=93.57 E-value=0.1 Score=43.01 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=40.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
++.|+++||+..++ ++..+++++..|...|+|+.... -+|.|+|..-
T Consensus 24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~rG------~~GGy~Lar~ 70 (150)
T COG1959 24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVRG------KGGGYRLARP 70 (150)
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeecC------CCCCccCCCC
Confidence 48999999999999 57999999999999999998862 2578988754
No 301
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.55 E-value=0.29 Score=47.46 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=72.0
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhc-----CCCCCCceEEeCCCCC-CCC--CccEEEecchhccC-
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD-----LPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDY- 265 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~-----a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~- 265 (359)
-+++-+|||.-.+...+-+..-. .++-+|. +.+++. ++..+...+...|+.. .++ +||+++....+++.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~-dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFE-DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCC-CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 39999999999988888775322 5677777 333332 3346778899999988 665 59999999999875
Q ss_pred ChhH-------HHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 266 DDEV-------CLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 266 ~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
.|+. +...+..++++++| ||+.+.+-..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence 3332 23468899999999 8998877663
No 302
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=0.18 Score=40.86 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=67.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecchhc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKLIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~vlh 263 (359)
.+..+.+|+|.|.|......++.. -...+++++ |..+...+. +.++.|..-|.++ +..+|.-++.+.+-.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence 455799999999999988877764 346888998 666654432 7888999999998 777665555544433
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
.++|- -.+++.-|+. +.+++-.-+-+|.
T Consensus 150 ~m~dL-----e~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 150 VMPDL-----EDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred HHhhh-----HHHHHhhCcC---CCeEEEEecCCCc
Confidence 33332 3445555666 7788777665554
No 303
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=93.40 E-value=0.19 Score=40.92 Aligned_cols=61 Identities=18% Similarity=0.333 Sum_probs=46.4
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
.++++.+.++.+. . |.+.+.++||+.+|+ ++..+++.|+.|...|++..... -+|.|.+..
T Consensus 9 YAl~~~i~la~~~---~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~G------~~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASLP---E-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVRG------KNGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcCC---C-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEecC------CCCCeeecC
Confidence 4566666655432 2 357899999999999 58999999999999999998852 135687764
No 304
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.32 E-value=0.53 Score=42.01 Aligned_cols=97 Identities=16% Similarity=0.252 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC------------CCCceEEe---CCCCC---CCCC-cc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE------------TDNLKFIA---GDMNQ---SIPS-AD 254 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~------------~~rv~~~~---~d~~~---~~~~-~D 254 (359)
...+||++|+|+|..++..+. .....++.-|.+..++..+. +..|.... ++... -.+. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 457899999999966665555 35668888888766554331 22343322 22222 1234 89
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+|+.+.++++-.. ...+++-++..|.. ++.+++.-..
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~l~~~l 201 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIFLAYPL 201 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEEEEEec
Confidence 9999999866432 23445556666776 6755444443
No 305
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=93.28 E-value=0.12 Score=41.51 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=38.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
++.|.++||+.+++ ++..++++|+.|...|++..... .++.|.++..
T Consensus 24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~g------~~ggy~l~~~ 70 (132)
T TIGR00738 24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVRG------PGGGYRLARP 70 (132)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEeccC------CCCCccCCCC
Confidence 59999999999999 57999999999999999987531 1356887654
No 306
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=93.21 E-value=0.12 Score=42.84 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=46.8
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhcC
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKD 111 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~ 111 (359)
+++++..+||+.+++ ++..+..+++-|...|+++... .+.+++|+.|+.++..
T Consensus 22 ~~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~--------y~gi~LT~~G~~~a~~ 74 (154)
T COG1321 22 KGFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP--------YGGVTLTEKGREKAKE 74 (154)
T ss_pred cCcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec--------CCCeEEChhhHHHHHH
Confidence 389999999999999 6789999999999999999987 5889999988766543
No 307
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.14 E-value=0.12 Score=50.30 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=45.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ 248 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~ 248 (359)
++.++.++|+-||||.++..+++.. .+++|+++ |+.++.|+. -.+.+|++|-.++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 6677999999999999999999864 47999998 888877764 5678999995555
No 308
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=93.10 E-value=0.1 Score=39.21 Aligned_cols=67 Identities=16% Similarity=0.330 Sum_probs=48.0
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ ++..+.+.++-|...|+|...... .+.-...|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~--~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSP--EDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCC--CCCCeEEEEECHhHHHHH
Confidence 34455666543 57999999999999 578999999999999999977420 000013577887776444
No 309
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=93.01 E-value=0.1 Score=46.65 Aligned_cols=65 Identities=15% Similarity=0.331 Sum_probs=55.8
Q ss_pred HHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 32 LKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
+.-.-|.+|+-.|.+ ||.|.+||-..+++ ++..+..=++-|...|++.+++ +.|++|+.|+.++.
T Consensus 10 f~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~~---------~~Y~LS~~G~iiv~ 74 (260)
T COG4742 10 FLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQEG---------DRYSLSSLGKIIVE 74 (260)
T ss_pred HccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEecC---------CEEEecchHHHHHH
Confidence 344556778888886 89999999999999 5688888999999999999995 89999999987774
No 310
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=92.99 E-value=0.34 Score=33.16 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=30.8
Q ss_pred CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 51 VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 51 ~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.|..+||+.+++ +...+++.|..|...|+++...
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 459999999999 6799999999999999998775
No 311
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=92.90 E-value=0.15 Score=42.11 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=40.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
++.|.++||++.++ ++..++++|..|...|||.... |-+|.|+++..
T Consensus 23 ~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~r------G~~GGy~La~~ 69 (153)
T PRK11920 23 KLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVR------GRNGGVRLGRP 69 (153)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec------CCCCCeeecCC
Confidence 57899999999999 5799999999999999999885 22577888753
No 312
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.88 E-value=0.24 Score=45.18 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=55.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCceEEeCCCCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIK-CSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ 248 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~ 248 (359)
.+.+..+. ..+....+|.--|.|+++..+++++|... .+++|. |.+++.+++ .+|++++..+|..
T Consensus 13 ~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 56666666 56779999999999999999999998765 999999 888888775 6799999988765
No 313
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=92.84 E-value=0.058 Score=36.87 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=37.2
Q ss_pred cCcccccccCCCC-CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 38 LGIPDIIHKRGRP-VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 38 lglf~~L~~~~~~-~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+.++-.|...+++ .|..+||+.+++ ++..+.+.++.|...|+|.+..
T Consensus 8 ~~vL~~l~~~~~~~~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 8 FRVLMALARHPGEELTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHSTTSGEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 3344555553222 899999999999 6899999999999999999885
No 314
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=92.70 E-value=0.18 Score=42.83 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=40.1
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
..|+++|..+ +++|.++||+.+|+ ....+|+.|..|...|++....
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEee
Confidence 3477888765 79999999999999 6899999999999999999653
No 315
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=92.69 E-value=0.093 Score=36.55 Aligned_cols=39 Identities=23% Similarity=0.510 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 47 RGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 47 ~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+|-|-|+.|||+.+|+. ++..+.+.|++|...|++.+..
T Consensus 22 ~G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 22 NGYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp HSS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred cCCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 35678999999999996 5899999999999999999985
No 316
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=92.63 E-value=0.13 Score=44.73 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=48.1
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEecCccchhhhc
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALTSASKLLLK 110 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t~~~~~l~~ 110 (359)
.|+..|... ++.|..+||+.+++ ++..+++.|+.|...|++.+..... ..+ -.-.|++|+.+..+..
T Consensus 5 ~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~-~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 5 DILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQ-GMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeeccc-CCCCCceEEEECcchhhhcc
Confidence 455666543 68999999999999 6899999999999999998763100 011 1124788888775443
No 317
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=92.54 E-value=0.05 Score=36.85 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=36.8
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++..|..+ ++.|..+||+.+++ ++..+.++++.|...|++.+..
T Consensus 8 iL~~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 8 ILRILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 34444444 67999999999999 6899999999999999999885
No 318
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=92.53 E-value=0.26 Score=33.01 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=32.4
Q ss_pred CCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
..+ |..+||+.+++ +...+++.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 6899999999999999998775
No 319
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.51 E-value=0.66 Score=45.39 Aligned_cols=120 Identities=17% Similarity=0.308 Sum_probs=77.9
Q ss_pred hHhhhhChHHHHHHHHHhhcCccchHHHHHhcccc-cCCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEeec-hHHH
Q 043623 157 WGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHI-FDGLSSLVEVGGGTGSFARIISEA----FPSIKCSVLEL-PHVI 230 (359)
Q Consensus 157 ~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~i 230 (359)
|+.+++|+-.-..|+++.. ..+....+++ .+....|+-+|+|.|-+..+..++ .-.++.++++- |.++
T Consensus 335 YetFEkD~VKY~~Yq~Ai~------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAi 408 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQQAIL------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAI 408 (649)
T ss_pred hhhhhccchHHHHHHHHHH------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchh
Confidence 5666677666566665542 3444444422 223567889999999988877664 23456677776 6665
Q ss_pred hcCCC------CCCceEEeCCCCC-CCC--CccEEEecchhccCChhH-HHHHHHHHHHhcCC
Q 043623 231 ADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEV-CLKLLKNCREAVAS 283 (359)
Q Consensus 231 ~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~-~~~iL~~~~~~L~p 283 (359)
...+. .++|+++..||.+ .-| .+|++++- .|--+.|.+ ..+-|..+-+.|||
T Consensus 409 vtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 409 VTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred hhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCC
Confidence 54432 7899999999998 544 48887654 344444333 34568888889999
No 320
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=92.43 E-value=0.12 Score=45.13 Aligned_cols=67 Identities=21% Similarity=0.347 Sum_probs=47.7
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEecCccchhhhcC
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALTSASKLLLKD 111 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t~~~~~l~~~ 111 (359)
|...|.++ +|+|+.|||+++|+ ++..+++-|+.|++.|+++.... ..-.| -.-.|++|..+.....+
T Consensus 16 il~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~-~~g~GRP~~~y~Lt~~g~~~f~~ 83 (218)
T COG2345 16 ILELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQ-QGGRGRPAKLYRLTEKGREQFPK 83 (218)
T ss_pred HHHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeec-cCCCCCCceeeeecccchhhcch
Confidence 34455554 89999999999999 57999999999999999987631 00001 01258888877654433
No 321
>PRK10742 putative methyltransferase; Provisional
Probab=92.41 E-value=0.23 Score=44.22 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=50.1
Q ss_pred HHHHHhcccccCCCC--eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHh-------cCC------C--CCCceEEe
Q 043623 182 KLIIKDCKHIFDGLS--SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIA-------DLP------E--TDNLKFIA 243 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~-------~a~------~--~~rv~~~~ 243 (359)
..+++++. ++++. +|||.=+|+|..+..++.+ +++++.+|. |.+.. .+. . ..|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 45666665 56655 9999999999999999988 667999998 43322 221 0 14677777
Q ss_pred CCCCC---CCC-CccEEEec
Q 043623 244 GDMNQ---SIP-SADAFLFK 259 (359)
Q Consensus 244 ~d~~~---~~~-~~D~i~~~ 259 (359)
+|..+ ..+ .||+|++-
T Consensus 152 ~da~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLD 171 (250)
T ss_pred CcHHHHHhhCCCCCcEEEEC
Confidence 77665 122 37777653
No 322
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=92.33 E-value=0.16 Score=35.65 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=42.4
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.++..|.+ ++.+..+||+++|+ +...+++-++.|.+.|+..... +..|++.+.
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~--------~~g~~l~~~ 56 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV--------GKGYRLPPP 56 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec--------CCceEecCc
Confidence 446667775 68999999999999 6899999999999999965543 255776543
No 323
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=92.32 E-value=0.17 Score=40.52 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=37.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
++.|..+||+++++ ++..+.++|+.|...|++..... .++.|.+..
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g------~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRG------VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCC------CCCChhhcC
Confidence 68999999999999 57999999999999999986531 135576644
No 324
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.31 E-value=0.95 Score=42.89 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=54.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCC---------------------------------------eEEEeec-hHHHh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSI---------------------------------------KCSVLEL-PHVIA 231 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~i~ 231 (359)
+.++..++|==||+|.++++.+...+++ .++++|+ +.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 5566899999999999999988776531 2679999 77877
Q ss_pred cCCC-------CCCceEEeCCCCC-CC--CCccEEEecch
Q 043623 232 DLPE-------TDNLKFIAGDMNQ-SI--PSADAFLFKLI 261 (359)
Q Consensus 232 ~a~~-------~~rv~~~~~d~~~-~~--~~~D~i~~~~v 261 (359)
.|+. .+.|+|..+|+.. .- ..+|+|+++--
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC
Confidence 6653 7889999999987 33 36899998743
No 325
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=92.24 E-value=0.16 Score=44.16 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=45.8
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.++..|..+ ++.+..+||+.+++ ++..+.+.|..|...|++.+... -...|.+|+.|
T Consensus 146 ~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~------r~~~~~lT~~G 203 (203)
T TIGR01884 146 LKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR------KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC------CccEEEeCCCC
Confidence 4455666553 57899999999999 57899999999999999998851 03578888754
No 326
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=92.20 E-value=0.16 Score=33.82 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=32.2
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccC
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSG 81 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g 81 (359)
|+..|..+++++|.++||+.+++ +.+-+++-+..|...|
T Consensus 5 il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCC
Confidence 45556333477999999999999 6899999999999999
No 327
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=92.09 E-value=0.1 Score=38.94 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=45.7
Q ss_pred ccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 41 PDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+..|.. ++....||.+.+ ++ ++..|.+=|+.|.+.|++++......+ ..-.|++|+.|..|.
T Consensus 11 L~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~p--~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 11 LRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEVP--PRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSSS--SEEEEEE-HHHHHHH
T ss_pred HHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCCC--CCCccCCCcCHHHHH
Confidence 344554 799999999999 88 679999999999999999987421000 013699999988666
No 328
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.82 E-value=0.16 Score=49.27 Aligned_cols=66 Identities=24% Similarity=0.428 Sum_probs=52.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-CC---CccEEEe
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-IP---SADAFLF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-~~---~~D~i~~ 258 (359)
..+..+|+|+=||.|.++..++++ -.+++++++ +++++.|++ .++++|+.++.++ + +. .+|.|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 446689999999999999999965 458999998 788877664 5669999999887 2 21 3788877
Q ss_pred c
Q 043623 259 K 259 (359)
Q Consensus 259 ~ 259 (359)
-
T Consensus 369 D 369 (432)
T COG2265 369 D 369 (432)
T ss_pred C
Confidence 5
No 329
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=91.68 E-value=0.21 Score=32.49 Aligned_cols=43 Identities=19% Similarity=0.387 Sum_probs=36.2
Q ss_pred ccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 41 PDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++.|.++ ++.|..+|++.+++ ++..+.+.|..|...|++....
T Consensus 6 l~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 6 LELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 3444443 67999999999999 6799999999999999999875
No 330
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=91.59 E-value=0.19 Score=39.59 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 25 SYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 25 ~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+|-..+.+-.=-.+.|+..|+++ +|.|+.|+|+..|- +...+.|-|+.|+..|++..+.
T Consensus 54 Sye~la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 54 SYEDLARVLSPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred cHHHHHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 34455555556678888999875 89999999999999 7899999999999999999886
No 331
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.55 E-value=2.7 Score=35.23 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=74.1
Q ss_pred EEcCCchHHHHHHHHHCC---CCeEEEeechH-HHhcCC---------CCCCceE-EeCCCCC--C-C--C--CccEEEe
Q 043623 200 EVGGGTGSFARIISEAFP---SIKCSVLELPH-VIADLP---------ETDNLKF-IAGDMNQ--S-I--P--SADAFLF 258 (359)
Q Consensus 200 DvG~G~G~~~~~l~~~~p---~~~~~~~D~~~-~i~~a~---------~~~rv~~-~~~d~~~--~-~--~--~~D~i~~ 258 (359)
=||=|.=.++..|++.+. ++-++.+|..+ ..+.-. +...+.+ ...|..+ . . . .||.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367888888899999877 44567777633 322221 1333443 3446555 1 2 1 3999999
Q ss_pred cchhccC-----------ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccC
Q 043623 259 KLIFHDY-----------DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERS 327 (359)
Q Consensus 259 ~~vlh~~-----------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 327 (359)
++--.-. ..+-...+|+.+.+.|++ +|.|.|.=..... ++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Cc
Confidence 8753220 112345788999999999 8998885432111 11
Q ss_pred HHHHHHHHHhcCCceeeEEecC
Q 043623 328 EKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 328 ~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
.=+++++.+++||...+..+..
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cccHHHHHHhcCCEEEEEecCC
Confidence 2223577788999998888763
No 332
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=91.51 E-value=0.11 Score=49.24 Aligned_cols=49 Identities=27% Similarity=0.479 Sum_probs=37.1
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCC
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDM 246 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~ 246 (359)
.+|||+=||.|.++..+++... +++++|. +++++.|+. -++++|+.++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 3899999999999999998754 7999998 788877764 57889987654
No 333
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.43 E-value=0.16 Score=39.06 Aligned_cols=83 Identities=17% Similarity=0.273 Sum_probs=44.0
Q ss_pred ccEEEecchh---c-cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC----CCCCchHHHHHHHhhhhhhhhcCCc
Q 043623 253 ADAFLFKLIF---H-DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE----KKDKPEITEAKLLYDALMMTCVPGI 324 (359)
Q Consensus 253 ~D~i~~~~vl---h-~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
||+|++..|. | ++.|+....+++++++.|+| || ++|+|+-.=. ..... ......+. .-
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p---GG-~lilEpQ~w~sY~~~~~~~--~~~~~n~~--------~i 67 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP---GG-ILILEPQPWKSYKKAKRLS--EEIRENYK--------SI 67 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE---EE-EEEEE---HHHHHTTTTS---HHHHHHHH--------H-
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC---CC-EEEEeCCCcHHHHHHhhhh--HHHHhHHh--------ce
Confidence 8999888764 3 36799999999999999999 55 5555542100 00000 00001111 11
Q ss_pred ccCHHHHHHHHHh--cCCceeeEEecC
Q 043623 325 ERSEKEWERLFFD--AGFTSYKITPLL 349 (359)
Q Consensus 325 ~~t~~e~~~ll~~--aGf~~~~~~~~~ 349 (359)
...++++.++|.+ .||...+....+
T Consensus 68 ~lrP~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 68 KLRPDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp ---GGGHHHHHTSTTT---EEEEE---
T ss_pred EEChHHHHHHHHhcccceEEEEEcccC
Confidence 2356678888887 699988866553
No 334
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.42 E-value=0.47 Score=44.77 Aligned_cols=102 Identities=17% Similarity=0.298 Sum_probs=71.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec---hHHHhcCC-------------CCCCceEEeCCCCCC------
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL---PHVIADLP-------------ETDNLKFIAGDMNQS------ 249 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~i~~a~-------------~~~rv~~~~~d~~~~------ 249 (359)
..+.....|+|+|.|.+...++.....-+-+|+++ |.-.+... ....+..+.+++..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 56778999999999999998877554444566665 33222211 145577889999873
Q ss_pred CCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 250 IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 250 ~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
.+.+++|+++++. ++++...+ +.++...+++ |.+++-.++..+.
T Consensus 270 ~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~---gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 270 QTEATVIFVNNVA--FDPELKLR-SKEILQKCKD---GTRIISSKPLVPR 313 (419)
T ss_pred hhcceEEEEeccc--CCHHHHHh-hHHHHhhCCC---cceEecccccccc
Confidence 2359999999987 44443333 4478888888 8999988888774
No 335
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=91.36 E-value=1.1 Score=36.47 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=47.3
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
++..|...+++.|..+||+.+++ ++..+.+.++.|...|+|.+....+ |.=.-.+.+|+.|+.+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~~~--DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTCAS--DRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecCCC--CcCeeeeEEChHHHHHHH
Confidence 44555433346899999999999 6789999999999999999885210 000125778888875553
No 336
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=91.34 E-value=0.18 Score=41.95 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=39.4
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
..|+++|..+ +.+|-++||+.+|+ +...+|++|..|...|++....
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 4467777654 78999999999999 6899999999999999997554
No 337
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.25 E-value=0.18 Score=47.97 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C-CCC--ccEEEecch
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S-IPS--ADAFLFKLI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~-~~~--~D~i~~~~v 261 (359)
+...|||||.|||.++...+++..+ ++++++. -+|.+.|++ +++|+++.---.+ . .|. +|+++...+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 3457999999999999998888755 6898887 666666553 7788877654333 2 222 777766655
Q ss_pred hccCChhHHHHHHHHHHHhcC
Q 043623 262 FHDYDDEVCLKLLKNCREAVA 282 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~ 282 (359)
.--+--+.+..-++.+++.|-
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 544444445556777777663
No 338
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=91.21 E-value=0.47 Score=43.05 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=67.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEeechH-HHhcCC----------CCCCceEEeCCCCC---C--CCCcc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSI-KCSVLELPH-VIADLP----------ETDNLKFIAGDMNQ---S--IPSAD 254 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~i~~a~----------~~~rv~~~~~d~~~---~--~~~~D 254 (359)
.+.+++|+-||+|-|.+.+...++ +.+ .+..+|+.+ +++..+ ..++|..+.||-+. . ...||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999999987 544 467777744 444332 27899999998665 2 33599
Q ss_pred EEEecchhccCChhH---HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 255 AFLFKLIFHDYDDEV---CLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~---~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+|+.-..= ...+.. -..++.-+.++||+ +|.+++..
T Consensus 198 Vii~dssd-pvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSD-PVGPACALFQKPYFGLVLDALKG---DGVVCTQG 236 (337)
T ss_pred EEEEecCC-ccchHHHHHHHHHHHHHHHhhCC---CcEEEEec
Confidence 99876421 011111 12467778899999 88887764
No 339
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=91.20 E-value=1.9 Score=40.86 Aligned_cols=106 Identities=10% Similarity=0.176 Sum_probs=70.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHh----cCCC--CCCceEEeCCCCC---CCC--C-ccEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIA----DLPE--TDNLKFIAGDMNQ---SIP--S-ADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~----~a~~--~~rv~~~~~d~~~---~~~--~-~D~i 256 (359)
-.++.+|||...+.|.=+.++++..++ ..++.+|. +.-+. +++. ..++..+..|... ..+ . ||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456799999999999999999998876 55689998 33333 2322 4557777777654 122 2 8888
Q ss_pred Eec------chh-------ccCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 257 LFK------LIF-------HDYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 257 ~~~------~vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
++- .++ ..++..+. .++|..+.+.||| ||.|+-....+...
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~e 294 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTPE 294 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCchh
Confidence 652 233 33333321 3689999999999 88777665554433
No 340
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=90.95 E-value=2.6 Score=39.65 Aligned_cols=149 Identities=16% Similarity=0.121 Sum_probs=76.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH--------C--------CCCeEEEeechH--HHhcCCC----------CCCc--eE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEA--------F--------PSIKCSVLELPH--VIADLPE----------TDNL--KF 241 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~--~i~~a~~----------~~rv--~~ 241 (359)
.++.-+|+|+||.+|..+..+... + |.+.++.-|+|. .-...+. ..++ .-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 455679999999999998876442 1 345778888752 2111111 1232 33
Q ss_pred EeCCCCC-CCC--CccEEEecchhccCC-------h------------------hH------------HHHHHHHHHHhc
Q 043623 242 IAGDMNQ-SIP--SADAFLFKLIFHDYD-------D------------------EV------------CLKLLKNCREAV 281 (359)
Q Consensus 242 ~~~d~~~-~~~--~~D~i~~~~vlh~~~-------d------------------~~------------~~~iL~~~~~~L 281 (359)
+.+.|.. -+| +.|++++++.||-.+ + +. ...+|+.=.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6688888 456 489999999998653 1 11 122333333468
Q ss_pred CCCCCCceEEEEeeecCCCCCCch--HHHHHHHhhh-hhhhhcC-------------CcccCHHHHHHHHHhcC-Ccee
Q 043623 282 ASSDGREKVIIVDIVVNEKKDKPE--ITEAKLLYDA-LMMTCVP-------------GIERSEKEWERLFFDAG-FTSY 343 (359)
Q Consensus 282 ~p~~~gG~lli~e~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~-------------g~~~t~~e~~~ll~~aG-f~~~ 343 (359)
+| ||++++.-...++...... ......+.+. .-|+.-| --.++.+|+++.+++.| |++.
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 88 9999988877776322110 0001111111 1111111 12368999999999887 4443
No 341
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=90.94 E-value=0.29 Score=34.27 Aligned_cols=55 Identities=22% Similarity=0.430 Sum_probs=41.7
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
.|+..+.. ++.+..+|++.+++ +...+.+.|+.|...|++...... ....|++++
T Consensus 11 ~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~~-----~~~~~~~~~ 65 (78)
T cd00090 11 RILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRREG-----RRVYYSLTD 65 (78)
T ss_pred HHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEec-----cEEEEEeCC
Confidence 34555554 34999999999999 578999999999999999977420 125677775
No 342
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.91 E-value=0.43 Score=49.30 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=58.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHC-------C-----CCeEEEeec-h---HHHhcCC---------------------C-
Q 043623 194 GLSSLVEVGGGTGSFARIISEAF-------P-----SIKCSVLEL-P---HVIADLP---------------------E- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~i~~a~---------------------~- 235 (359)
..-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34799999999998777766543 4 467888885 2 1111110 0
Q ss_pred -------CCCc--eEEeCCCCCC---CC-CccEEEecc-hhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 236 -------TDNL--KFIAGDMNQS---IP-SADAFLFKL-IFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 236 -------~~rv--~~~~~d~~~~---~~-~~D~i~~~~-vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
..+| ++..+|+.+- +. .+|++++-. .-..-++-....+|+.+.+.++| ||++.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEEE
Confidence 2233 3566787652 22 389888763 22222333345789999999999 777763
No 343
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=90.81 E-value=0.38 Score=36.02 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=39.9
Q ss_pred HHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 53 LPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 53 ~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
..+||+.+++ ++..+.+.++.|...|++.+.. +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~--------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP--------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC--------CCceEechhHHHHH
Confidence 4689999999 6799999999999999999986 45799999877554
No 344
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=90.40 E-value=0.37 Score=32.95 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=33.8
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+++++..+||+.+++ ++..+...++-|...|+++...
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 489999999999999 6899999999999999999885
No 345
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=90.18 E-value=0.35 Score=35.91 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=48.0
Q ss_pred HHHcCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHH----------HHHhccCce-eeccccCCCCCCCceEecC
Q 043623 35 AVELGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIM----------RLLDHSGFF-STTKVHNSREEENEAYALT 102 (359)
Q Consensus 35 a~~lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L----------~~L~~~g~l-~~~~~~~~~~~~~~~~~~t 102 (359)
=++..|+..|... +.+.++.|||+.+++ ++..+..-| ..|+.+|+| .+... ++...|++|
T Consensus 9 ~~R~~vl~~L~~~yp~~~~~~eIar~v~~---~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~-----~g~k~Y~lT 80 (90)
T PF07381_consen 9 KVRKKVLEYLCSIYPEPAYPSEIARSVGS---DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEK-----GGFKYYRLT 80 (90)
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHHCC---CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeec-----CCeeEEEeC
Confidence 3455666666554 578999999999999 677777777 459999999 33321 124589999
Q ss_pred ccchhhh
Q 043623 103 SASKLLL 109 (359)
Q Consensus 103 ~~~~~l~ 109 (359)
+.+..++
T Consensus 81 ~~G~~~~ 87 (90)
T PF07381_consen 81 EKGKRIA 87 (90)
T ss_pred hhhhhHH
Confidence 9877543
No 346
>PRK06474 hypothetical protein; Provisional
Probab=89.30 E-value=0.49 Score=40.16 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 29 SIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
..+|.--.++.|++.|...+++.|+.+|++.+ ++ +..-+-|.|+.|...|+|.......++.+-...|++++.+.
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 34555667788888887643459999999999 56 46788999999999999998642111111123577777543
No 347
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=89.25 E-value=0.4 Score=28.18 Aligned_cols=31 Identities=26% Similarity=0.585 Sum_probs=25.7
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCce
Q 043623 50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFF 83 (359)
Q Consensus 50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l 83 (359)
|+|-+|||..+|+ .++-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5789999999999 689999999999998875
No 348
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=89.22 E-value=0.44 Score=37.41 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=43.1
Q ss_pred HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
..++..|.+.+.++ |.+|..+++..+|+ +...+++.++.|++-|-|...+
T Consensus 11 ~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 11 EELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 44556677777776 79999999999999 6899999999999999999885
No 349
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.20 E-value=0.96 Score=36.63 Aligned_cols=106 Identities=21% Similarity=0.252 Sum_probs=63.8
Q ss_pred eEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CCC--CccEEEecchhccC-------ChhHHHHHHHHHHH
Q 043623 220 KCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDY-------DDEVCLKLLKNCRE 279 (359)
Q Consensus 220 ~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~-------~d~~~~~iL~~~~~ 279 (359)
++.+||+ +++++..++ .+||+++..+=.. -.+ ..|+++++--.=.= ..+...+.|+.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 5889999 677776653 4689988765443 233 48999888532111 13446688999999
Q ss_pred hcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 280 AVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 280 ~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
.|+| ||.+.|+-..-.+.... +.. ...+|.+-|.+..|.+.+...+
T Consensus 81 lL~~---gG~i~iv~Y~GH~gG~e----E~~----------------av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 81 LLKP---GGIITIVVYPGHPGGKE----ESE----------------AVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HEEE---EEEEEEEE--STCHHHH----HHH----------------HHHHHHHTS-TTTEEEEEEEES
T ss_pred hhcc---CCEEEEEEeCCCCCCHH----HHH----------------HHHHHHHhCCcceEEEEEEEcc
Confidence 9999 88887766543332111 111 2455555556667888777766
No 350
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=89.01 E-value=0.21 Score=37.37 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+++....-|.-.+++ +-...+..++.|+..|++...+. +....|.+|+.|.-+.
T Consensus 29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~-----~~~~~y~lT~KG~~fl 82 (95)
T COG3432 29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDN-----GRRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccC-----CccceEEEChhHHHHH
Confidence 478999999999999 68999999999999997666651 0112799999998443
No 351
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=88.89 E-value=3.4 Score=37.63 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=72.7
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-C----CCCccEEEecchhccCC----
Q 043623 197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-S----IPSADAFLFKLIFHDYD---- 266 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~----~~~~D~i~~~~vlh~~~---- 266 (359)
+|+|+-||.|.+...+.+..-+ .+.++|. +.+++..+....-.++.+|+.+ . .+.+|+++...-...++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~-~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE-IVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE-EEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 6899999999999988876422 3577887 5555544431111255667766 1 34589998876554332
Q ss_pred -----hhHHHHHHHH---HHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623 267 -----DEVCLKLLKN---CREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA 338 (359)
Q Consensus 267 -----d~~~~~iL~~---~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a 338 (359)
|+. -.++.. +.+.++| +++++|.+..-.... ......+|.+.|++.
T Consensus 81 ~~~~~d~r-~~L~~~~~~~i~~~~P-----~~~v~ENV~g~~~~~--------------------~~~~~~~i~~~l~~~ 134 (275)
T cd00315 81 RKGFEDTR-GTLFFEIIRILKEKKP-----KYFLLENVKGLLTHD--------------------NGNTLKVILNTLEEL 134 (275)
T ss_pred cCCCCCch-HHHHHHHHHHHHhcCC-----CEEEEEcCcchhccC--------------------chHHHHHHHHHHHhC
Confidence 222 122322 3334466 688888764321100 112467788889999
Q ss_pred CCceeeE
Q 043623 339 GFTSYKI 345 (359)
Q Consensus 339 Gf~~~~~ 345 (359)
||.+...
T Consensus 135 GY~~~~~ 141 (275)
T cd00315 135 GYNVYWK 141 (275)
T ss_pred CcEEEEE
Confidence 9986443
No 352
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=88.86 E-value=0.75 Score=34.65 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=38.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
.+.|..|||+.+|+ ++..+.|.|..|...|++..... .+.|..+
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-------~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-------MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-------CceeecC
Confidence 68999999999999 67899999999999999998752 4677765
No 353
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=88.67 E-value=0.53 Score=36.39 Aligned_cols=56 Identities=18% Similarity=0.404 Sum_probs=42.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.=.-.+.+|+.|..+.
T Consensus 42 ~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~~--~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 42 GKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERSE--DDERKVIISINKEQRSKI 97 (109)
T ss_pred CcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCCc--ccCCeEEEEECHHHHHHH
Confidence 68999999999999 689999999999999999987521 000012366777776444
No 354
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=88.46 E-value=0.57 Score=31.63 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=33.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++.|..+|++.+++ +...+.+.|+.|...|++....
T Consensus 9 ~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 9 GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 68999999999999 5789999999999999999764
No 355
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=88.33 E-value=0.57 Score=33.61 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=36.9
Q ss_pred cccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 42 DIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 42 ~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|.|..+ +.+++.+||.+++. ++..++-+|..|+++|-+.+..
T Consensus 9 d~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 9 DLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 556665 78999999999999 5799999999999999999874
No 356
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=88.26 E-value=0.39 Score=36.89 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=39.9
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
.+..|+..|... ++.|..+||+.+|+ ++..+++.++.|...|++...
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence 345677777763 68999999999999 679999999999999999844
No 357
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=88.18 E-value=0.67 Score=33.28 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee-ccccCCCCCCCceEecCccch
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST-TKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~-~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+.|+...+||+.+++ ++.-+|-.+..|.++|+|+. ... .+.|..|..+-
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~~-------s~GriPT~~aY 70 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPHP-------SGGRIPTDKAY 70 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCCC-------CCCCCcCHHHH
Confidence 589999999999999 67899999999999999985 432 36688876554
No 358
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.59 E-value=5.3 Score=38.20 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=62.2
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEe---CC-CCC------CCCCccEEEec
Q 043623 192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIA---GD-MNQ------SIPSADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~---~d-~~~------~~~~~D~i~~~ 259 (359)
..++.+||.+|||. |..+..+++...-.++++++. ++..+.+++...+.++. .+ +.+ +-..+|+++-+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678999999998 899999999876445888876 55655554321222222 11 111 11137877664
Q ss_pred c---------------hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 260 L---------------IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 260 ~---------------vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
- +|+..++. ...+..+.+.|++ +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence 2 12222333 3468888899999 899988854
No 359
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=87.21 E-value=3 Score=34.18 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCc-------ccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee
Q 043623 13 FQAQAHLYKHVLSYMSSIFLKCAVELGI-------PDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST 85 (359)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~l~~a~~lgl-------f~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 85 (359)
.=++.+.++ +++-|-..|+.++.+.++ +..+.-.+.|+++.+|+..++.+ |...+..-|+-|...|+++.
T Consensus 55 EyaL~~ay~-Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~ 131 (199)
T COG5631 55 EYALMRAYE-AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITR 131 (199)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceec
Confidence 334444444 678888889988887664 22332235899999999999997 78899999999999999999
Q ss_pred ccccCCCCCCCceEecCccch
Q 043623 86 TKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.+. +-+-.|..|+.|.
T Consensus 132 t~~-----gkevTy~vTa~G~ 147 (199)
T COG5631 132 TGS-----GKEVTYEVTALGH 147 (199)
T ss_pred CCC-----CceEEEEEecchH
Confidence 863 1123688888765
No 360
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=87.16 E-value=1.1 Score=39.32 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=49.6
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+|.....++ .+.+ ...+|..+||+.+++ ++..+.+.|+.|...|++++.... ....+++|+.|+.+.
T Consensus 6 ~Lk~iallg---~l~~-~~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~~-----r~~~v~LTekG~~ll 72 (217)
T PRK14165 6 ALKKLALLG---AVNN-TVKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIVP-----RGQLITITEKGLDVL 72 (217)
T ss_pred HHHHHHHHh---ccCC-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEcC-----CceEEEECHHHHHHH
Confidence 344444444 4443 256999999999999 689999999999999999987420 135788898887544
No 361
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=86.37 E-value=1.5 Score=40.18 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=67.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCC----C--CCCceEEeCCCCCC----CCC-ccEEEe
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLP----E--TDNLKFIAGDMNQS----IPS-ADAFLF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~----~--~~rv~~~~~d~~~~----~~~-~D~i~~ 258 (359)
-.++.+|||+.++.|.=+..++...+ ...+++.|. +.-+...+ . ..++..+..|.... .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 35678999999999999999999887 568999998 44333322 1 56677776776652 223 888876
Q ss_pred c------chhccCCh-------hH-------HHHHHHHHHHhc----CCCCCCceEEEEeeec
Q 043623 259 K------LIFHDYDD-------EV-------CLKLLKNCREAV----ASSDGREKVIIVDIVV 297 (359)
Q Consensus 259 ~------~vlh~~~d-------~~-------~~~iL~~~~~~L----~p~~~gG~lli~e~~~ 297 (359)
- .++..-++ ++ =.++|+++.+.+ +| ||+++-.-...
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccH
Confidence 2 22222211 11 136899999999 99 78776554433
No 362
>PRK10870 transcriptional repressor MprA; Provisional
Probab=86.25 E-value=1.2 Score=37.63 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=48.5
Q ss_pred cCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 38 LGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 38 lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
+.++-.|... +++.|..+||+.+++ +...+.++++.|...|+|.+..... |.-.-.+.+|+.|+.+..
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~~--DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESDN--DRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCC--CCCeeEEEECHHHHHHHH
Confidence 3445555432 367899999999999 6799999999999999999885211 001125778888875553
No 363
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=85.96 E-value=1.2 Score=31.61 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=45.9
Q ss_pred HHHHHHHHcCcc-----cccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 30 IFLKCAVELGIP-----DIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 30 ~~l~~a~~lglf-----~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
.++..+-+.|.. ..+. -+.|-++||..+|+ +...+.+.|+.|...|++.... +.+....
T Consensus 6 ~Ll~l~~~~~~~~~~~~~~~~---~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~---------~~i~I~d 69 (76)
T PF13545_consen 6 FLLELAERFGRRQDGDGIRIP---LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR---------GKIIILD 69 (76)
T ss_dssp HHHHHHHHHEEEEETTEEEEE---EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET---------TEEEESS
T ss_pred HHHHHHHHHCCCCCCCCceEE---ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC---------CEEEECC
Confidence 345566666664 2333 57999999999999 6899999999999999999885 5666654
No 364
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=85.87 E-value=1.3 Score=35.76 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=33.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|++|.+|||-.+|+ ..+.+-.-|.++++-|-|.+..
T Consensus 5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~ 40 (155)
T PF07789_consen 5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVN 40 (155)
T ss_pred CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEec
Confidence 89999999999999 6799999999999999888774
No 365
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=85.76 E-value=1 Score=30.93 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=32.1
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|... |..+||+++++ +..-+++-|+.|.+.|++....
T Consensus 21 g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 21 GDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp TSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 3567 99999999999 6899999999999999999886
No 366
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=85.40 E-value=0.4 Score=36.80 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=32.8
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|++.|..+ +.++-++||+.+++ ++..++++|..|...|++....
T Consensus 18 Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 18 ILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 46677654 68999999999999 6899999999999999997664
No 367
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=85.35 E-value=0.74 Score=45.10 Aligned_cols=69 Identities=12% Similarity=0.228 Sum_probs=55.2
Q ss_pred HHHcCcccccccCCCC-CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch-hhhcCC
Q 043623 35 AVELGIPDIIHKRGRP-VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK-LLLKDK 112 (359)
Q Consensus 35 a~~lglf~~L~~~~~~-~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~-~l~~~~ 112 (359)
+.+..|+..|... ++ .+.++||+.+|+ ++..+.+.+..|.+.|+++..... ...|.+|+.|+ ++....
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~------~~~~~LT~eG~~~l~~G~ 72 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK------RETWVLTEEGKKYAAEGS 72 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE------EEEEEECHHHHHHHHcCC
Confidence 4566677778753 44 799999999999 689999999999999999877531 46899999998 666655
Q ss_pred C
Q 043623 113 P 113 (359)
Q Consensus 113 ~ 113 (359)
|
T Consensus 73 P 73 (492)
T PLN02853 73 P 73 (492)
T ss_pred H
Confidence 5
No 368
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.25 E-value=1.3 Score=42.43 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCCceEEeCCCCC---CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 236 TDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 236 ~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
.++|+++.+++.+ ..| ++|.+++..++--+++++..+.++.+.+.++| ||+++.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 6999999999887 233 49999999999888999999999999999999 9999987766544
No 369
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=85.23 E-value=1.1 Score=39.13 Aligned_cols=55 Identities=20% Similarity=0.445 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 28 SSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
...+|...++..|++.|... +|+.+.|||+++|+ .+.-+..-+..|+..|++..+
T Consensus 16 v~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeee
Confidence 34567778888899999874 89999999999999 478888899999999999865
No 370
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=85.12 E-value=0.86 Score=35.45 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=38.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCC--CCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQ--PNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~--~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+.-|++.|...+++.|+++|.+++.-. ..+..-+-|.|+.|+..|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 344667776545799999999998321 115688999999999999999875
No 371
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.07 E-value=3.2 Score=36.44 Aligned_cols=94 Identities=20% Similarity=0.382 Sum_probs=65.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC----CCC-----eEEEeechHHHhcCCCCCCceEEeCCCCCC---------CC--
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF----PSI-----KCSVLELPHVIADLPETDNLKFIAGDMNQS---------IP-- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~----p~~-----~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~---------~~-- 251 (359)
+.+..+++|+....|.++.-+.++. |+. +++.+|+..|.. -+.|.-+.+|+.++ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence 5677899999999999998887764 211 388999876654 35677788888762 22
Q ss_pred CccEEEecc-----hhccCChh----HHHHHHHHHHHhcCCCCCCceEEE
Q 043623 252 SADAFLFKL-----IFHDYDDE----VCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 252 ~~D~i~~~~-----vlh~~~d~----~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
.+|+|++-. -+|+++.- -....|.-...+|+| ||.++-
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FVa 161 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFVA 161 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeeeh
Confidence 389999876 46766532 223445555668999 887764
No 372
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=85.04 E-value=0.82 Score=45.39 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=51.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh-cCCC
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL-KDKP 113 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~-~~~~ 113 (359)
+..++..|... ++.|..+||+.+++ ++..+.++++.|.+.|++..... ....|.+|+.|+.+. ...|
T Consensus 8 e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~------~~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 8 EKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEER------VEEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEee------eEEEEEECHHHHHHHHhcCH
Confidence 44555666553 68999999999999 68999999999999999998752 025799999998444 4443
No 373
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=84.86 E-value=1.3 Score=37.27 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc--CCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 25 SYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL--EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 25 ~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
..|..-+++..+.+.= +..++++||+++ ++ .+.-++.-|+.|..+|++.+++ +|.|..|
T Consensus 22 ~~W~~~~ir~l~~l~~--------~~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~--------~g~y~~t 82 (171)
T PF14394_consen 22 SSWYHPAIRELLPLMP--------FAPDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG--------DGKYVQT 82 (171)
T ss_pred hhhHHHHHHHHhhcCC--------CCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC--------CCcEEEe
Confidence 3455555555544321 334899999999 99 5899999999999999999997 5799999
Q ss_pred ccch
Q 043623 103 SASK 106 (359)
Q Consensus 103 ~~~~ 106 (359)
..+.
T Consensus 83 ~~~l 86 (171)
T PF14394_consen 83 DKSL 86 (171)
T ss_pred ccee
Confidence 7543
No 374
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.82 E-value=16 Score=28.46 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCchH-HHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCC----CCCccEEEecchhccCChh
Q 043623 194 GLSSLVEVGGGTGS-FARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQS----IPSADAFLFKLIFHDYDDE 268 (359)
Q Consensus 194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~----~~~~D~i~~~~vlh~~~d~ 268 (359)
..++|++||-|.=. .+..|+++ ++.++..|+.+- .+ ...+.++.-|.++| +.++|+|.+-. +++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 45699999988764 44455554 367888888443 33 26788999999985 34688888764 456
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 269 VCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+....+-.+.+++ |..++|.-..
T Consensus 82 El~~~ildva~aV-----ga~l~I~pL~ 104 (129)
T COG1255 82 ELQSAILDVAKAV-----GAPLYIKPLT 104 (129)
T ss_pred HHHHHHHHHHHhh-----CCCEEEEecC
Confidence 6777777788777 4567766544
No 375
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=84.57 E-value=2.2 Score=32.06 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=49.3
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhhh-hcCCcc-------cCHHH
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMMT-CVPGIE-------RSEKE 330 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~-------~t~~e 330 (359)
.+|-|++.++..++|+++....+ +++++.=. |.. + .+.+ +... .+.+.. -..++
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~-----~~~ifTfA--P~T---~-------~L~~m~~iG~lFP~~dRsp~i~~~~e~~ 65 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR-----GSLIFTFA--PRT---P-------LLALMHAIGKLFPRPDRSPRIYPHREED 65 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc-----CcEEEEEC--CCC---H-------HHHHHHHHhccCCCCCCCCcEEEeCHHH
Confidence 46667888899999999987664 56665311 111 1 1111 1111 122222 26889
Q ss_pred HHHHHHhcCCceeeEEecC--Ccce-EEEEE
Q 043623 331 WERLFFDAGFTSYKITPLL--GLRS-FIEVY 358 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~--~~~~-~i~~~ 358 (359)
+.+.++++||++.+...+. ++.+ ++|++
T Consensus 66 l~~~l~~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 66 LRRALAAAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred HHHHHHhCCCeeeecccccCcChHHHHhhcc
Confidence 9999999999999887773 3333 55543
No 376
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=84.50 E-value=1.3 Score=42.90 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=38.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
++|.|.++|++++++ +++.++++|+.|...|++.+.+ ++.|.+.
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~--------~g~~~l~ 351 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE--------RGQWVLA 351 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC--------CCceEec
Confidence 479999999999999 5799999999999999999765 4567665
No 377
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=84.00 E-value=1.6 Score=38.14 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHH
Q 043623 28 SSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRL 76 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~ 76 (359)
.-.+|+.|.++|-||. + ...+..+||+.+|+. +..+...||.
T Consensus 160 Q~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGIS---kst~~ehLRr 201 (215)
T COG3413 160 QLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGIS---KSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCCC---HHHHHHHHHH
Confidence 4569999999999997 4 579999999999994 4555555544
No 378
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=83.74 E-value=1.7 Score=39.21 Aligned_cols=200 Identities=13% Similarity=0.135 Sum_probs=102.8
Q ss_pred CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhcCCCCChhHHHHHhcCccccch
Q 043623 52 TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITP 131 (359)
Q Consensus 52 t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 131 (359)
+.-.|+....+ ..+.+..+++.|...|++..+. +...+|..|+.++..- .++..-.+.+
T Consensus 36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~---------g~v~~TekG~E~~e~~--gi~~~~~~~C------- 94 (354)
T COG1568 36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE---------GGVELTEKGEELAEEL--GIKKKYDYTC------- 94 (354)
T ss_pred chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec---------CcEeehhhhHHHHHHh--CCCccccccc-------
Confidence 78888888777 4688999999999999999996 5599999998777531 2221111110
Q ss_pred hhhHHHHHccCCCC-ChhhhccCCChhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHH
Q 043623 132 GHYLSRWLRGNELP-DPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFAR 210 (359)
Q Consensus 132 ~~~L~~~l~~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~ 210 (359)
++..+.|-+ .+|+..+ ..+-++....|+-...|.+....-......++--+..+--.++.|+-+|- --..++
T Consensus 95 -----~~CeGrgi~l~~f~dll-~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvGD-DDLtsi 167 (354)
T COG1568 95 -----ECCEGRGISLQAFKDLL-EKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVGD-DDLTSI 167 (354)
T ss_pred -----cCcCCccccchhHHHHH-HHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEcC-chhhHH
Confidence 111101110 0011000 11222222223322233332211110000000001111224578999993 333333
Q ss_pred HH-HHHCCCCeEEEeechH-HHhcC----CC--CCCceEEeCCCCCCCCC-----ccEEEecchhccCChhHHHHHHHHH
Q 043623 211 II-SEAFPSIKCSVLELPH-VIADL----PE--TDNLKFIAGDMNQSIPS-----ADAFLFKLIFHDYDDEVCLKLLKNC 277 (359)
Q Consensus 211 ~l-~~~~p~~~~~~~D~~~-~i~~a----~~--~~rv~~~~~d~~~~~~~-----~D~i~~~~vlh~~~d~~~~~iL~~~ 277 (359)
++ +...|. ++.++|+.+ .+.-. ++ .++|+.+..|..+|+|+ ||+++.--.- +-.....+|.+=
T Consensus 168 a~aLt~mpk-~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~alk~FlgRG 243 (354)
T COG1568 168 ALALTGMPK-RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKALKLFLGRG 243 (354)
T ss_pred HHHhcCCCc-eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHHHHHHHhcc
Confidence 33 333454 788889843 33322 22 57799999999998883 8987653210 112233455555
Q ss_pred HHhcCC
Q 043623 278 REAVAS 283 (359)
Q Consensus 278 ~~~L~p 283 (359)
..+||.
T Consensus 244 I~tLkg 249 (354)
T COG1568 244 IATLKG 249 (354)
T ss_pred HHHhcC
Confidence 667765
No 379
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=83.59 E-value=0.74 Score=32.94 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=23.4
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHh
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLD 78 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~ 78 (359)
|+..|+. |.|+|+++||..+|+ ....++..|..+-
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~---~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGW---PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT-----HHHHHHHHHH-T
T ss_pred HHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHhCC
Confidence 6677886 799999999999999 4666666665543
No 380
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=83.55 E-value=7.5 Score=30.84 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecCCc
Q 043623 272 KLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGL 351 (359)
Q Consensus 272 ~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 351 (359)
.+|+++++.++| ||.+.-.. ....+++-|.++||.+.++...++-
T Consensus 71 e~~~~l~~~~~~---~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 71 ELFKKLARLSKP---GGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp HHHHHHHHHEEE---EEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred HHHHHHHHHhCC---CcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 679999999999 66554311 1234688899999999888877777
Q ss_pred ceEEEEEC
Q 043623 352 RSFIEVYL 359 (359)
Q Consensus 352 ~~~i~~~~ 359 (359)
..++.|.|
T Consensus 116 r~~~~a~~ 123 (124)
T PF05430_consen 116 REMLRAVK 123 (124)
T ss_dssp SEEEEEEC
T ss_pred chheEEEc
Confidence 77777765
No 381
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=83.44 E-value=1.6 Score=34.16 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=34.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.++|++|||+.+.+ +++.++.+|+.+...|.++..+
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 67899999999999 6899999999999999999996
No 382
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=83.37 E-value=5.3 Score=31.69 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCchH-HHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCCC----CCccEEEecchhccCChh
Q 043623 194 GLSSLVEVGGGTGS-FARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSI----PSADAFLFKLIFHDYDDE 268 (359)
Q Consensus 194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~~----~~~D~i~~~~vlh~~~d~ 268 (359)
+..+|++||-|.=. .+..|.+. ++.+++.|+.+. .+ ...+.++.-|.++|- .++|+|.+-+ ++.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----PPP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEEEeC-----CCh
Confidence 35699999988764 44455555 378999998433 22 377999999999953 3589998876 334
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 269 VCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+.+.-+.++.+.. |.-++|....
T Consensus 82 El~~~il~lA~~v-----~adlii~pL~ 104 (127)
T PF03686_consen 82 ELQPPILELAKKV-----GADLIIRPLG 104 (127)
T ss_dssp TSHHHHHHHHHHH-----T-EEEEE-BT
T ss_pred HHhHHHHHHHHHh-----CCCEEEECCC
Confidence 5566666677666 4567776543
No 383
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=83.27 E-value=1.2 Score=43.92 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=53.8
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch-hhhcCCC
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK-LLLKDKP 113 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~-~l~~~~~ 113 (359)
.+..|+..|...++..+.++||+.+|+ ++..+.+.+..|.+.|+++..... ...|.+|+.|+ ++....|
T Consensus 7 ~e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~------~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 7 EENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK------SNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE------EEEEEECHHHHHHHHcCCH
Confidence 344556666542257999999999999 689999999999999999877531 46899999998 6666555
No 384
>PHA02943 hypothetical protein; Provisional
Probab=83.25 E-value=1.2 Score=36.21 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.|++.|. .|+.|..|||+.+|+ +...++-.|..|...|.+.+..
T Consensus 15 eILE~Lk--~G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 15 KTLRLLA--DGCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHHh--cCCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence 4556664 388999999999999 6899999999999999999885
No 385
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=81.90 E-value=2.3 Score=39.95 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=39.9
Q ss_pred hChHHHHHHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC----C----CCeEEEeec
Q 043623 162 QNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF----P----SIKCSVLEL 226 (359)
Q Consensus 162 ~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p----~~~~~~~D~ 226 (359)
..|+....|.+..+... -.....+. .+.+..++++|.|+|.++..+++.. | .+++..++.
T Consensus 50 TApels~lFGella~~~---~~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~ 117 (370)
T COG1565 50 TAPELSQLFGELLAEQF---LQLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEP 117 (370)
T ss_pred echhHHHHHHHHHHHHH---HHHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEec
Confidence 34667777777654321 12222222 4556789999999999999887753 4 568888887
No 386
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=81.90 E-value=1 Score=32.24 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=39.4
Q ss_pred HcCcccccccCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRG-RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~-~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+..+++.++.+. .+.+-.+|++.++. |++.+-..++.|...|++.+..
T Consensus 4 ~~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 4 QYCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred HHHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 444555664422 67899999999999 7899999999999999999885
No 387
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.87 E-value=1.7 Score=39.21 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCC
Q 043623 208 FARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVAS 283 (359)
Q Consensus 208 ~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p 283 (359)
++..|.++.++.++++.|. +..++.+.+.+-+.-...+ .+...++|+|+++- |.....++|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 4677888889999999998 6666666443333333332 22344689999984 446678899999998888
No 388
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=81.47 E-value=1.8 Score=33.56 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=49.6
Q ss_pred HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
...++.++..|... ++.+..+||+.+++ ++..+.++++.|...|++.+....+ |.-.-.+.+|+.|+.+..
T Consensus 21 t~~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~--DrR~~~l~lT~~G~~~~~ 91 (126)
T COG1846 21 TPPQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPE--DRRAVLVRLTEKGRELLE 91 (126)
T ss_pred CHHHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcc--ccceeeEEECccHHHHHH
Confidence 33455566666653 34444999999999 6899999999999999999986311 001135788888875443
No 389
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=81.22 E-value=1.4 Score=36.67 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 47 RGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 47 ~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+++|+|++||++.+|+ +...+..-++-|...|++.+.-
T Consensus 38 s~~Pmtl~Ei~E~lg~---Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 38 SRKPLTLDEIAEALGM---SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred cCCCccHHHHHHHHCC---CcchHHHHHHHHHhcchHHhhh
Confidence 3489999999999999 6789999999999999999873
No 390
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=80.96 E-value=1.5 Score=38.72 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=44.7
Q ss_pred HHHHHhcccccCCC--CeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhc--------CCC--------CCCceEEe
Q 043623 182 KLIIKDCKHIFDGL--SSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIAD--------LPE--------TDNLKFIA 243 (359)
Q Consensus 182 ~~l~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~--------a~~--------~~rv~~~~ 243 (359)
..++++.. ++++ .+|||.-+|-|.-+.-++.. ++++++++...++.. +.. ..||+++.
T Consensus 63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34566654 4443 39999999999999988865 678999998444321 111 35899999
Q ss_pred CCCCC--CCC--CccEEEecchh
Q 043623 244 GDMNQ--SIP--SADAFLFKLIF 262 (359)
Q Consensus 244 ~d~~~--~~~--~~D~i~~~~vl 262 (359)
+|..+ ..+ +||+|++-=.+
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S-
T ss_pred CCHHHHHhhcCCCCCEEEECCCC
Confidence 99888 332 49999886444
No 391
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=80.65 E-value=2.2 Score=36.46 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=48.7
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
..++..|..+ ++.|..+||+.+++ +...+.++++-|...|++.+....+ |.=.-...+|+.|+.+..
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~~--DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKED--DKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCC--CCCeeEEEECHHHHHHHH
Confidence 3456666654 68999999999999 5678999999999999999874210 001124677888875553
No 392
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.64 E-value=6.4 Score=37.22 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=64.3
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCC-C----CC-CC-CCccEEEecchh
Q 043623 195 LSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGD-M----NQ-SI-PSADAFLFKLIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d-~----~~-~~-~~~D~i~~~~vl 262 (359)
..+|+-+|||. |.++..+++.+.-.++++.|. ++-++.|++ .+.+.....+ . .+ .- ..+|+++=+.-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 34999999997 666678888888789999998 777777765 1222222121 0 01 11 24899987765
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
....+..+.++++| ||++.++-....+
T Consensus 248 -------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 12468888899999 9999998776555
No 393
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=80.30 E-value=1.7 Score=36.32 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=41.6
Q ss_pred HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
..+..|+++|.. ++..|..+||+++|+ ++..+.+=++.|...|++..-
T Consensus 14 ~~D~~IL~~Lq~-d~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 14 RIDRNILNELQK-DGRISNVELSKRVGL---SPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHHhcc-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 357788888976 489999999999999 678999999999999999853
No 394
>PF13730 HTH_36: Helix-turn-helix domain
Probab=80.16 E-value=1.9 Score=28.49 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=27.1
Q ss_pred CHHHHHhhcCCCCCCcchHHHHHHHHhccCce
Q 043623 52 TLPELVSALEFQPNKRNCLRRIMRLLDHSGFF 83 (359)
Q Consensus 52 t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l 83 (359)
|.+.||+.+|+ +.+-+.+.++.|...|++
T Consensus 27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 89999999999 689999999999999985
No 395
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=80.07 E-value=1.8 Score=38.88 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=40.1
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
..|.+.|.+. +..++.|||+.+++ ++.-++|-|+.|.+.|++.+..
T Consensus 8 ~~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 8 QILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 3466777764 78999999999999 6789999999999999999886
No 396
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=80.01 E-value=1.6 Score=32.53 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=40.3
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.+.|+..|... +|-.+.-+|..+++ +...++..|+.|..+|++++..
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 34566667654 78999999999999 5799999999999999999996
No 397
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=79.90 E-value=1.6 Score=35.97 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=40.8
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
.+..|++.|.. ++..|..+||+++|+ ++..+++=++.|...|++...
T Consensus 10 ~D~~Il~~Lq~-d~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRGILEALME-NARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 46678888876 489999999999999 678999999999999999854
No 398
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=79.66 E-value=1.7 Score=37.58 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=32.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
.+.|++|+|+.+|+ +.--.||.|++|++-|++..+
T Consensus 172 ~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 172 QELTAEELAQALGI---SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred CccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEE
Confidence 78999999999999 688999999999999999866
No 399
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=79.52 E-value=2.7 Score=33.11 Aligned_cols=80 Identities=16% Similarity=0.224 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcC-CCCCCcchHHHHHHHHhccCceeeccccCCC
Q 043623 14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALE-FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSR 92 (359)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 92 (359)
-+....++.+.+-|..-+|+...+ ++....||-+.++ + ++.-|.+-|+.|...|++.+..-...+
T Consensus 11 c~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~~~P 76 (120)
T COG1733 11 CPVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYPEEP 76 (120)
T ss_pred CCHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecCCCC
Confidence 346677888888888887765432 6889999999988 8 689999999999999999988521100
Q ss_pred CCCCceEecCccchhhh
Q 043623 93 EEENEAYALTSASKLLL 109 (359)
Q Consensus 93 ~~~~~~~~~t~~~~~l~ 109 (359)
..-.|++|+.|+-|.
T Consensus 77 --prveY~LT~~G~~L~ 91 (120)
T COG1733 77 --PRVEYRLTEKGRDLL 91 (120)
T ss_pred --ceeEEEEhhhHHHHH
Confidence 124699999877555
No 400
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.50 E-value=8.7 Score=35.51 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=46.4
Q ss_pred CCeEEEEcCCch--HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHH
Q 043623 195 LSSLVEVGGGTG--SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCL 271 (359)
Q Consensus 195 ~~~vlDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~ 271 (359)
..+|.=||+|.- .++..+.+.....+++++|. ++..+.+++..-+.....+..+...++|+|+.+-- .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 357888998863 33334444333247888998 55555443321111111222122345899888753 33345
Q ss_pred HHHHHHHHhcCC
Q 043623 272 KLLKNCREAVAS 283 (359)
Q Consensus 272 ~iL~~~~~~L~p 283 (359)
.+++.+...+++
T Consensus 81 ~v~~~l~~~l~~ 92 (307)
T PRK07502 81 AVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHhhCCC
Confidence 677778788888
No 401
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=78.92 E-value=1.6 Score=39.29 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=40.7
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+..|.+.|.++ +.+++.|||+.+++ ++.-+||-|..|...|++.+..
T Consensus 7 ~~~Il~~l~~~-~~~~~~ela~~l~v---S~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 7 HDAIIELVKQQ-GYVSTEELVEHFSV---SPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 34566777664 78999999999999 6899999999999999999886
No 402
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=78.92 E-value=3.3 Score=37.39 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=30.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEeec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-----PSIKCSVLEL 226 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~ 226 (359)
+.+...++|+|||.|.++..+.... +..+++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 4677899999999999999999988 5678999997
No 403
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=78.61 E-value=9.4 Score=33.87 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=71.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-----hHHHhcCCCCCCceEEeCCCCCCCC------CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-----PHVIADLPETDNLKFIAGDMNQSIP------SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-----~~~i~~a~~~~rv~~~~~d~~~~~~------~~D~i~~~ 259 (359)
++++.+||-+|.++|....++..- .|+--+..++. -+.+..|++..||..+.-|+..|.. -.|+|+.-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 578899999999999988888764 46666777775 2567778888899888899887643 25665543
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~ 301 (359)
+- .+|+ +.-+.-++.--||+ ||.++|.--....++
T Consensus 234 -va--qpdq-~RivaLNA~~FLk~---gGhfvisikancids 268 (317)
T KOG1596|consen 234 -VA--QPDQ-ARIVALNAQYFLKN---GGHFVISIKANCIDS 268 (317)
T ss_pred -CC--Cchh-hhhhhhhhhhhhcc---CCeEEEEEecccccc
Confidence 21 3443 33344467778999 888887654444333
No 404
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=78.56 E-value=1.4 Score=39.78 Aligned_cols=49 Identities=35% Similarity=0.540 Sum_probs=43.0
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV 88 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 88 (359)
+..+.++|..+||-.+-+||.+++|+ +..-+.|+|+-|+.+|++++.+.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEEe
Confidence 35677888878888999999999999 46899999999999999999863
No 405
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=78.06 E-value=2.4 Score=38.36 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=27.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHH
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVI 230 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i 230 (359)
-.+++|||+|||+|...+....... .++...|. .+++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence 3568999999999999988777542 56677776 3444
No 406
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=77.30 E-value=2.1 Score=35.07 Aligned_cols=48 Identities=13% Similarity=0.276 Sum_probs=41.2
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.+..|++.|.. +++.+..+||+++|+ ++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~-d~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQE-DARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 45567778876 478999999999999 6789999999999999998774
No 407
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=76.66 E-value=3.2 Score=35.76 Aligned_cols=38 Identities=16% Similarity=0.431 Sum_probs=33.5
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+-|.|..|||+.+|++ ++..+.+.|+.|...|++.+..
T Consensus 23 ~~~~~~~ela~~~~~~--s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 23 GYPPSIREIARAVGLR--SPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCCcHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEecCC
Confidence 3578999999999993 2789999999999999999985
No 408
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=76.45 E-value=5.6 Score=34.67 Aligned_cols=97 Identities=10% Similarity=0.190 Sum_probs=57.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCC--eEEEeec-hHHHhcCCC----------------------------------
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSI--KCSVLEL-PHVIADLPE---------------------------------- 235 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~i~~a~~---------------------------------- 235 (359)
..+.++-|-.||.|+++.-+.--+++. ++++-|+ +++++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 456899999999999998776655443 5888898 667655441
Q ss_pred --------------CCCceEEeCCCCCCC-------C-CccEEEecchh---ccCC----hhHHHHHHHHHHHhcCCCCC
Q 043623 236 --------------TDNLKFIAGDMNQSI-------P-SADAFLFKLIF---HDYD----DEVCLKLLKNCREAVASSDG 286 (359)
Q Consensus 236 --------------~~rv~~~~~d~~~~~-------~-~~D~i~~~~vl---h~~~----d~~~~~iL~~~~~~L~p~~~ 286 (359)
.....+...|++++. + ..|+|+.---. -+|. .+-+.++|..++++|.+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 122456778888831 1 26888765332 3343 34467899999999954
Q ss_pred CceEEE
Q 043623 287 REKVII 292 (359)
Q Consensus 287 gG~lli 292 (359)
++.+.|
T Consensus 207 ~sVV~v 212 (246)
T PF11599_consen 207 RSVVAV 212 (246)
T ss_dssp T-EEEE
T ss_pred CcEEEE
Confidence 455555
No 409
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.33 E-value=19 Score=35.86 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCch-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCC--------------CC-------
Q 043623 193 DGLSSLVEVGGGTG-SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMN--------------QS------- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~--------------~~------- 249 (359)
.++.+|+-+|||.= ..+...++... .+++++|. ++..+.++. -..+++..|.. ++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes-lGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES-MGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH-cCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 35789999999875 55556666654 58999998 666666654 12222211110 01
Q ss_pred -----CCCccEEEecchhccCChhHHHHH-HHHHHHhcCCCCCCceEEEEee
Q 043623 250 -----IPSADAFLFKLIFHDYDDEVCLKL-LKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 250 -----~~~~D~i~~~~vlh~~~d~~~~~i-L~~~~~~L~p~~~gG~lli~e~ 295 (359)
..++|+++-.-.. +......+ .+...+.+|| ||.++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCC---CCEEEEEcc
Confidence 1358999887643 22111233 5889999999 898876643
No 410
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=76.08 E-value=4 Score=38.53 Aligned_cols=43 Identities=23% Similarity=0.543 Sum_probs=33.4
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP 227 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 227 (359)
++++.+. .+.+...|+|||.|.|+++..+.-.| +++|.++|-.
T Consensus 143 elvSsi~-~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegs 185 (476)
T KOG2651|consen 143 ELVSSIS-DFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGS 185 (476)
T ss_pred HHHHHHH-hhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccc
Confidence 3444443 15678899999999999999988865 5799999974
No 411
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=75.95 E-value=8 Score=34.76 Aligned_cols=84 Identities=11% Similarity=0.137 Sum_probs=64.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC--CCCC-ccEEEecchhccCChh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ--SIPS-ADAFLFKLIFHDYDDE 268 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~--~~~~-~D~i~~~~vlh~~~d~ 268 (359)
+.++..-+|+|...|..+-.+.++ ++.++.+|-..+.+......+|+....|-|+ |-++ .|-.++-.| +
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------E 280 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------E 280 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------c
Confidence 567889999999999999999997 7899999988888887778999999999988 4232 665555443 2
Q ss_pred HHHHHHHHHHHhcCC
Q 043623 269 VCLKLLKNCREAVAS 283 (359)
Q Consensus 269 ~~~~iL~~~~~~L~p 283 (359)
+-.++-+.+...|..
T Consensus 281 kP~rv~~li~~Wl~n 295 (358)
T COG2933 281 KPARVAALIAKWLVN 295 (358)
T ss_pred CcHHHHHHHHHHHHc
Confidence 223455666677775
No 412
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=75.76 E-value=3.8 Score=36.67 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCchHHHHHH---HHHC--CCCeEEEeec----hHHHh---------------------------cCCC--
Q 043623 194 GLSSLVEVGGGTGSFARII---SEAF--PSIKCSVLEL----PHVIA---------------------------DLPE-- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l---~~~~--p~~~~~~~D~----~~~i~---------------------------~a~~-- 235 (359)
-+..|+++||=.|..++.+ ++.+ ++-++.++|. |+.-. +...
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 3579999999999766554 3333 4567888885 32211 0101
Q ss_pred --CCCceEEeCCCCCCCCC--ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 236 --TDNLKFIAGDMNQSIPS--ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 236 --~~rv~~~~~d~~~~~~~--~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
.++|+++.|.+.+.+|. .+-|.+-++=.++ -+.....|..++..|.| ||.|++-|..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-YesT~~aLe~lyprl~~---GGiIi~DDY~ 214 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-YESTKDALEFLYPRLSP---GGIIIFDDYG 214 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-HHHHHHHHHHHGGGEEE---EEEEEESSTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccc-hHHHHHHHHHHHhhcCC---CeEEEEeCCC
Confidence 36899999999763332 1222222111111 13356789999999999 7766665543
No 413
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=75.69 E-value=3 Score=38.94 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=42.3
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
..|++.|.+ +.+.+.++||+++++ +...+.+-++.|...|++-.... +..|++.+.
T Consensus 7 ~~il~~L~~-~~~~s~~~LA~~lgv---sr~tV~~~l~~L~~~G~~i~~~~-------~~Gy~L~~~ 62 (319)
T PRK11886 7 LQLLSLLAD-GDFHSGEQLGEELGI---SRAAIWKHIQTLEEWGLDIFSVK-------GKGYRLAEP 62 (319)
T ss_pred HHHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceEEec-------CCeEEecCc
Confidence 445666665 368999999999999 68999999999999999443321 246887554
No 414
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=75.43 E-value=13 Score=33.95 Aligned_cols=82 Identities=18% Similarity=0.086 Sum_probs=51.3
Q ss_pred CeEEEEcCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEe-CCC-CCCCCCccEEEecchhccCChhHH
Q 043623 196 SSLVEVGGGT--GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIA-GDM-NQSIPSADAFLFKLIFHDYDDEVC 270 (359)
Q Consensus 196 ~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~-~d~-~~~~~~~D~i~~~~vlh~~~d~~~ 270 (359)
.+|+=+|.|- |.++..+.++.+..++++.|. ....+.+.. -.+.... .+. ......+|+|+++= |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-lgv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-LGVIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-cCcccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 4566667553 455666666667777888887 444554442 2222221 222 22444589999984 55667
Q ss_pred HHHHHHHHHhcCC
Q 043623 271 LKLLKNCREAVAS 283 (359)
Q Consensus 271 ~~iL~~~~~~L~p 283 (359)
.++++++...|++
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 7899999999998
No 415
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=75.06 E-value=3.5 Score=29.13 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=36.6
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
|...|+. +..|.++|-+.+|+ +...+...|..|...|++++.
T Consensus 10 IL~~ls~--~c~TLeeL~ekTgi---~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 10 ILIILSK--RCCTLEELEEKTGI---SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHh--ccCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeee
Confidence 4455665 58999999999999 678999999999999999987
No 416
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.01 E-value=4.9 Score=34.29 Aligned_cols=99 Identities=12% Similarity=0.163 Sum_probs=54.8
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------CCCceEEeCCCCCCCCCccEE
Q 043623 197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------------------TDNLKFIAGDMNQSIPSADAF 256 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------------------~~rv~~~~~d~~~~~~~~D~i 256 (359)
+|.-||.|.=.+..+++-+..+.+++++|. ++.++..++ ..|+.+. .|+.+.....|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 577788887666665555555679999999 555544332 2233332 1111112247777
Q ss_pred Eecc-hhccC----ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 257 LFKL-IFHDY----DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 257 ~~~~-vlh~~----~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
+.+- +-.+- +-....++++.+.+.+++ |.++|++...+..
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvppG 125 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPPG 125 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSSTT
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEEe
Confidence 6653 22111 112256788999999998 7898888877654
No 417
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=74.84 E-value=21 Score=31.44 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCchHHHH--HHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCCCccEEEecc
Q 043623 194 GLSSLVEVGGGTGSFAR--IISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIPSADAFLFKL 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~--~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~~~D~i~~~~ 260 (359)
.+.+||-||||.-..-. .|++...++.++.-++ ++..+.+ ...+|+++..++.. ...++++|+..-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~-~~~~i~~~~r~~~~~dl~g~~LViaAT 93 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK-KYGNLKLIKGNYDKEFIKDKHLIVIAT 93 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH-hCCCEEEEeCCCChHHhCCCcEEEECC
Confidence 46799999999887654 3445434444444455 4443333 36789999888766 455688887773
No 418
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=74.80 E-value=4.2 Score=34.03 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=50.1
Q ss_pred HHHHHHhHHHHHHHHHHH-HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCc
Q 043623 19 LYKHVLSYMSSIFLKCAV-ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENE 97 (359)
Q Consensus 19 l~~~~~~~~~~~~l~~a~-~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~ 97 (359)
+++++ |.-.+.++...+ .++ .+-.- -.|..+||+.+|+ +..-+.|.+..|...+++.+.. .+
T Consensus 49 ~l~l~-g~k~~~Vl~~il~~~d-~~N~v----~~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~--------~G 111 (165)
T PF05732_consen 49 VLDLI-GNKAFRVLMYILENMD-KDNAV----VATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR--------NG 111 (165)
T ss_pred Hhhhh-chhHHHHHHHHHHhcC-CCCeE----EeeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc--------CC
Confidence 44443 333455555555 355 33222 2588999999999 6789999999999999999886 58
Q ss_pred eEecCcc
Q 043623 98 AYALTSA 104 (359)
Q Consensus 98 ~~~~t~~ 104 (359)
.|.++|.
T Consensus 112 ~Y~iNP~ 118 (165)
T PF05732_consen 112 AYMINPN 118 (165)
T ss_pred eEEECcH
Confidence 9999985
No 419
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=74.75 E-value=2.8 Score=38.14 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=40.6
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
...|++.|..+ +.+++.|||+.+++ ++.-+||=|..|...|++.+..
T Consensus 19 ~~~Il~~L~~~-~~vtv~eLa~~l~V---S~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 19 REQIIQRLRQQ-GSVQVNDLSALYGV---STVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHHCC---CHHHHHHHHHHHHhCCCeEEEe
Confidence 34566777764 68999999999999 6799999999999999999886
No 420
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=74.21 E-value=2.3 Score=37.41 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch-hhhcCCCCChhHHHHHhc-Cc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK-LLLKDKPYCLSPFVLLVT-DA 126 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~-~~ 126 (359)
+.....|||+.+|+ -+.++...++-|+..|+++..+ .+.|..|..|. +|... -..++.|..... ..
T Consensus 24 p~v~q~eIA~~lgi---T~QaVsehiK~Lv~eG~i~~~g--------R~~Y~iTkkG~e~l~~~-~~dlr~f~~ev~~~l 91 (260)
T COG1497 24 PRVKQKEIAKKLGI---TLQAVSEHIKELVKEGLIEKEG--------RGEYEITKKGAEWLLEQ-LSDLRRFSEEVELVL 91 (260)
T ss_pred CCCCHHHHHHHcCC---CHHHHHHHHHHHHhccceeecC--------CeeEEEehhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 56889999999999 4789999999999999999986 47999999887 44322 114555554431 11
Q ss_pred cccchhhhHH-HHHc
Q 043623 127 AFITPGHYLS-RWLR 140 (359)
Q Consensus 127 ~~~~~~~~L~-~~l~ 140 (359)
.....|..++ +-++
T Consensus 92 ~~~~vw~AIA~edI~ 106 (260)
T COG1497 92 DYVMVWTAIAKEDIK 106 (260)
T ss_pred hhHHHHHHhhHhhhc
Confidence 1234565555 3344
No 421
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=74.20 E-value=3.7 Score=36.82 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=24.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHCC--------CCeEEEeec
Q 043623 195 LSSLVEVGGGTGSFARIISEAFP--------SIKCSVLEL 226 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~ 226 (359)
+-+|+|+|+|+|.++..+++... .++++.++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~ 58 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEI 58 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-T
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcC
Confidence 47999999999999999988543 358999997
No 422
>PRK05638 threonine synthase; Validated
Probab=74.06 E-value=3.5 Score=40.36 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=44.5
Q ss_pred cccccccCCCCCCHHHHHhhcC--CCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhh
Q 043623 40 IPDIIHKRGRPVTLPELVSALE--FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLL 108 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
|+..|.+ ++.+.-||++.++ + ++..+.+.|+.|...|+++.... ++-.-.|++|+.+..+
T Consensus 376 IL~~L~~--~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~----~g~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 376 ILKILSE--REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYR----KGRRVYYKLTEKGRRL 437 (442)
T ss_pred HHHHHhh--CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeec----CCCcEEEEECcHHHHH
Confidence 4455554 6889999999998 6 57899999999999999986410 0112359999987743
No 423
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=74.03 E-value=16 Score=31.25 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCchHHHHHHHH----HCCCCeEEEeech--HHHhcCCCCCCceEEeCCCCCCC---C------C-ccEEE
Q 043623 194 GLSSLVEVGGGTGSFARIISE----AFPSIKCSVLELP--HVIADLPETDNLKFIAGDMNQSI---P------S-ADAFL 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~----~~p~~~~~~~D~~--~~i~~a~~~~rv~~~~~d~~~~~---~------~-~D~i~ 257 (359)
.+..|+++|.-.|.-+..++. .....+++++|+. +.-..|++.++|.|+.++-.+|- + . --+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 468999999877776665544 2334688888873 22234445899999999887631 0 1 23334
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD 302 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~ 302 (359)
+-..-|++ +.+..-|+-..+.|.. |..++|-|...++-+.
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp~ 188 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSA---GDYLVVEDSNVNDLPG 188 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhc---CceEEEecccccCCCC
Confidence 44444543 3355667777888888 8888888888777653
No 424
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=73.86 E-value=4.4 Score=36.81 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=39.2
Q ss_pred CCCCHHHHHhhcC--CCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623 49 RPVTLPELVSALE--FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS 105 (359)
Q Consensus 49 ~~~t~~~LA~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+..++++||++++ + +..-++.-|+.|...|++++++ +|.|..|..+
T Consensus 136 ~~~~~~~ia~~l~p~i---s~~ev~~sL~~L~~~glikk~~--------~g~y~~t~~~ 183 (271)
T TIGR02147 136 FADDPEELAKRCFPKI---SAEQVKESLDLLERLGLIKKNE--------DGFYKQTDKA 183 (271)
T ss_pred CCCCHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCeeECC--------CCcEEeecce
Confidence 4447899999999 5 5788999999999999999997 5889998753
No 425
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=73.33 E-value=5.7 Score=34.81 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=34.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|..++..+||+++|+ +..-+|.-|+.|...|+|+...
T Consensus 28 G~~L~e~eLae~lgV---SRtpVREAL~~L~~eGlv~~~~ 64 (224)
T PRK11534 28 DEKLRMSLLTSRYAL---GVGPLREALSQLVAERLVTVVN 64 (224)
T ss_pred CCcCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEEeC
Confidence 567899999999999 6889999999999999999876
No 426
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=73.06 E-value=3.7 Score=33.88 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=49.9
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCceEEeCCCCCCCCCccEEEecchh
Q 043623 197 SLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------------TDNLKFIAGDMNQSIPSADAFLFKLIF 262 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------------~~rv~~~~~d~~~~~~~~D~i~~~~vl 262 (359)
+|.-+|+|.+..+.+..-...+.+++.... ++.++..++ ..++.+ ..|+.+-..++|+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiia--- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIA--- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEec---
Confidence 467789999988876544444567888877 444433221 122322 23333223458988876
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.|-.....+++++...+++ +..+|.
T Consensus 77 --vPs~~~~~~~~~l~~~l~~----~~~ii~ 101 (157)
T PF01210_consen 77 --VPSQAHREVLEQLAPYLKK----GQIIIS 101 (157)
T ss_dssp --S-GGGHHHHHHHHTTTSHT----T-EEEE
T ss_pred --ccHHHHHHHHHHHhhccCC----CCEEEE
Confidence 3434456789999999987 445443
No 427
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=72.97 E-value=4.2 Score=36.30 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=38.9
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.|.+.|.++ +..+.++||+.+++ ++.-++|-|..|...|.+.+..
T Consensus 8 ~Il~~l~~~-~~~~~~eLa~~l~V---S~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 8 AIVDLLLNH-TSLTTEALAEQLNV---SKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 456677664 79999999999999 6899999999999999998765
No 428
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=72.81 E-value=5.6 Score=35.07 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.|+-++-.|-|. + |.+++..+||+++|+ +..-++.-|..|++.|+|+...
T Consensus 24 ~Lr~~Il~g~l~--p--G~~l~e~~La~~~gv---SrtPVReAL~rL~~eGlv~~~p 73 (230)
T COG1802 24 ELREAILSGELA--P--GERLSEEELAEELGV---SRTPVREALRRLEAEGLVEIEP 73 (230)
T ss_pred HHHHHHHhCCCC--C--CCCccHHHHHHHhCC---CCccHHHHHHHHHHCCCeEecC
Confidence 344444444444 3 689999999999999 6789999999999999999996
No 429
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.80 E-value=26 Score=32.59 Aligned_cols=98 Identities=12% Similarity=0.133 Sum_probs=66.0
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCC-----CC----CCC--CccEE
Q 043623 192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDM-----NQ----SIP--SADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~-----~~----~~~--~~D~i 256 (359)
++.+.+||-+|+|. |.++...++.+--.++++.|+ +.-++.|++ .+.+......- .+ -.. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 67789999999985 677777888888889999999 778888776 22222222211 01 011 27888
Q ss_pred EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
+-+..++ .-++.+..++++ ||.++++.+..+..
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAEEI 279 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc---CCEEEEeccCCCcc
Confidence 8777653 235666778898 89988887655443
No 430
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=72.65 E-value=30 Score=28.56 Aligned_cols=77 Identities=13% Similarity=0.251 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCchHHH--HHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC-CCCCccEEEecchhccCChhHH
Q 043623 194 GLSSLVEVGGGTGSFA--RIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDDEVC 270 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d~~~ 270 (359)
.+.+||=||||.=..- ..|++. +.++++++ |+..+...+.+.+++....+.+ ...++|+++..- +|++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT-----~d~e~ 83 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAAT-----NQHAV 83 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEECC-----CCHHH
Confidence 4689999999975543 345554 45676665 3333322223466776666555 556789888762 44443
Q ss_pred HHHHHHHH
Q 043623 271 LKLLKNCR 278 (359)
Q Consensus 271 ~~iL~~~~ 278 (359)
-..+....
T Consensus 84 N~~i~~~a 91 (157)
T PRK06719 84 NMMVKQAA 91 (157)
T ss_pred HHHHHHHH
Confidence 34444443
No 431
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=72.45 E-value=3.9 Score=31.50 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=47.6
Q ss_pred CCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC--C-----CCccEEEecchhccCChhHHHH
Q 043623 203 GGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS--I-----PSADAFLFKLIFHDYDDEVCLK 272 (359)
Q Consensus 203 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~--~-----~~~D~i~~~~vlh~~~d~~~~~ 272 (359)
||.|.++..+++.. .+.+++++|. ++.++.++... +.++.||..++ + ..+|.+++..- +|+....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 34456666665543 3457999998 66776665433 88999999982 1 24777766532 4454444
Q ss_pred HHHHHHHhcCCCCCCceEEE
Q 043623 273 LLKNCREAVASSDGREKVII 292 (359)
Q Consensus 273 iL~~~~~~L~p~~~gG~lli 292 (359)
+...+ +.+.| ..++++
T Consensus 79 ~~~~~-r~~~~---~~~ii~ 94 (116)
T PF02254_consen 79 IALLA-RELNP---DIRIIA 94 (116)
T ss_dssp HHHHH-HHHTT---TSEEEE
T ss_pred HHHHH-HHHCC---CCeEEE
Confidence 44444 44555 466654
No 432
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=72.39 E-value=5.2 Score=34.65 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=34.1
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|..++..+||+.+|+ +..-++.-|+.|...|+|+..+
T Consensus 32 G~~L~e~~La~~lgV---SRtpVReAL~~L~~eGlv~~~~ 68 (212)
T TIGR03338 32 GAKLNESDIAARLGV---SRGPVREAFRALEEAGLVRNEK 68 (212)
T ss_pred CCEecHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEec
Confidence 578899999999999 6899999999999999999886
No 433
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=72.20 E-value=55 Score=27.07 Aligned_cols=132 Identities=22% Similarity=0.284 Sum_probs=68.9
Q ss_pred EcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC------CCCccEEEecchhccCChhHHH
Q 043623 201 VGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS------IPSADAFLFKLIFHDYDDEVCL 271 (359)
Q Consensus 201 vG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~------~~~~D~i~~~~vlh~~~d~~~~ 271 (359)
|=||||..+..+++.. .+.+++++-. ++-.+. ..+++++.+|++++ +.++|.|+..-.-. ..+ .
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~-~~~---~ 75 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP-PKD---V 75 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST-TTH---H
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhh-ccc---c
Confidence 3466777777766643 2367777776 443333 68899999999983 23589888776432 222 3
Q ss_pred HHHHHHHHhcCCCCCCceEEEEeee-cCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 272 KLLKNCREAVASSDGREKVIIVDIV-VNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 272 ~iL~~~~~~L~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
...+.+.++++..+ -.+++++... ................+ ........+.++.+++.|+..+-+.|-
T Consensus 76 ~~~~~~~~a~~~~~-~~~~v~~s~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~e~~~~~~~~~~~ivrp~ 144 (183)
T PF13460_consen 76 DAAKNIIEAAKKAG-VKRVVYLSSAGVYRDPPGLFSDEDKPIF--------PEYARDKREAEEALRESGLNWTIVRPG 144 (183)
T ss_dssp HHHHHHHHHHHHTT-SSEEEEEEETTGTTTCTSEEEGGTCGGG--------HHHHHHHHHHHHHHHHSTSEEEEEEES
T ss_pred cccccccccccccc-cccceeeeccccCCCCCcccccccccch--------hhhHHHHHHHHHHHHhcCCCEEEEECc
Confidence 34445555443310 2355554433 22221111000000000 011124456678888889876666553
No 434
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=71.92 E-value=4.8 Score=27.66 Aligned_cols=47 Identities=13% Similarity=0.235 Sum_probs=35.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.+++.+++.+++|.+ -.......++.+...|+++.++ +.+++|+.|.
T Consensus 19 ~Gi~~~~~~~~~g~~--~~~~~~~~l~~l~~~Gll~~~~---------~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGID--FAEEFQKELEELQEDGLLEIDG---------GRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT----THHH-HHHHHHHHHTTSEEE-S---------SEEEE-TTTG
T ss_pred CCcCHHHHHHHHCcC--HHHHHHHHHHHHHHCCCEEEeC---------CEEEECcccC
Confidence 468999999999984 2345577899999999999995 8999998764
No 435
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=71.85 E-value=10 Score=32.85 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=41.7
Q ss_pred CCCeEEEEcCCchHHHH--HHHHHCCCCeEEEeec--hHHHhcCCCCCCceEEeCCCCC-CCCCccEEEec
Q 043623 194 GLSSLVEVGGGTGSFAR--IISEAFPSIKCSVLEL--PHVIADLPETDNLKFIAGDMNQ-SIPSADAFLFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~--~l~~~~p~~~~~~~D~--~~~i~~a~~~~rv~~~~~d~~~-~~~~~D~i~~~ 259 (359)
.+.+||-||+|.-.... .|++. +.++++++. .+.+....+..+|+++.+++.. .+.++|+|+.+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 35799999999765443 34443 457777764 2233322234589999998776 45568888876
No 436
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=71.55 E-value=3.1 Score=37.51 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=40.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+..|.+.|.+. +.+++.|||+.+++ ++.-+||=|+.|...|++.+..
T Consensus 7 ~~~Il~~L~~~-~~v~v~eLa~~l~V---S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 7 QAAILEYLQKQ-GKTSVEELAQYFDT---TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHHc-CCEEHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 34567778764 78999999999999 6789999999999999999886
No 437
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=71.52 E-value=3.1 Score=31.57 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=31.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
.++++++|++++++ +...++..|+.|...|++..+
T Consensus 64 ~Gv~v~~I~~~l~~---~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 64 EGVHVDEIAQQLGM---SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp TTEEHHHHHHHSTS----HHHHHHHHHHHHHTTSEEES
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHhCCeEecc
Confidence 67999999999999 579999999999999998766
No 438
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=71.36 E-value=2.8 Score=28.78 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=33.6
Q ss_pred ccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 41 PDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++.|-.. |+.|..+|++.+++ +++.++.-|-.|...|++....
T Consensus 19 ~~~Ll~~-G~ltl~~i~~~t~l---~~~~Vk~~L~~LiQh~~v~y~~ 61 (62)
T PF08221_consen 19 GEVLLSR-GRLTLREIVRRTGL---SPKQVKKALVVLIQHNLVQYFE 61 (62)
T ss_dssp HHHHHHC--SEEHHHHHHHHT-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHcCCeeeec
Confidence 4445443 78999999999999 5799999999999999998753
No 439
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=71.34 E-value=13 Score=35.26 Aligned_cols=258 Identities=10% Similarity=-0.021 Sum_probs=125.9
Q ss_pred HHHHHHhHHHHHHHHHHHHcCccccccc---CCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623 19 LYKHVLSYMSSIFLKCAVELGIPDIIHK---RGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE 95 (359)
Q Consensus 19 l~~~~~~~~~~~~l~~a~~lglf~~L~~---~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 95 (359)
+..+..+...+.....--.+..|+...+ +..+...+.+++..+... ....+.|+..+....+++-...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~~~y~~~~--dl~~~~w~~~~h~~~~~e~~~~------- 91 (364)
T KOG1269|consen 21 RFTLALKNVASNVISVDNYLTFIKKNAEINAEETEDLPEQIAKYYNNST--DLYERNWGQSFHFGRIPEGNSN------- 91 (364)
T ss_pred chhhhhccccchhhhhhhHhhhhhhhcccccccccccchHHHHHhcccc--hhhhhhhccchhccCccchhHH-------
Confidence 3444445555555555555555555433 114566777888877741 3566677777776666444321
Q ss_pred CceEecCccchhhhcC-CCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHh
Q 043623 96 NEAYALTSASKLLLKD-KPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGL 174 (359)
Q Consensus 96 ~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~ 174 (359)
...+....--+.+... .|.. ... . .+...+....+.+.++ ...+... +.+.|+.... ....+....
T Consensus 92 ~~~~~~~~~~~~l~~~~~~~~---~~~-~-~~~g~~~~~~~i~~f~-~~~~~Gl----~~n~~e~~~~---~~~~~~~~l 158 (364)
T KOG1269|consen 92 EMFWIRHEGIVALRESCFPGS---KVL-D-VGTGVGGPSRYIAVFK-KAGVVGL----DNNAYEAFRA---NELAKKAYL 158 (364)
T ss_pred HHHHHhhcchHHHhhcCcccc---ccc-c-cCcCcCchhHHHHHhc-cCCccCC----CcCHHHHHHH---HHHHHHHHh
Confidence 1111111112233322 1111 111 1 1222334445566666 2222111 1122332211 111122222
Q ss_pred hcCccch-HHHHHh-cccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCceEEe
Q 043623 175 ASDSQMA-KLIIKD-CKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------TDNLKFIA 243 (359)
Q Consensus 175 ~~~~~~~-~~l~~~-~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~ 243 (359)
.....+. +.+... +.+.--+..+++|++|+.+.....+.+.++-++-.+++. .+.+..... ....++..
T Consensus 159 ~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~ 238 (364)
T KOG1269|consen 159 DNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEG 238 (364)
T ss_pred hhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceec
Confidence 2222222 333333 222223467999999999999999999998888777776 444444331 12234444
Q ss_pred CCCCC-C--CCC-ccEEEe-------------------------cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 244 GDMNQ-S--IPS-ADAFLF-------------------------KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 244 ~d~~~-~--~~~-~D~i~~-------------------------~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+|+.- + ..+ ++++.. ..+.-||++. ..++......++| +|.+++.+
T Consensus 239 gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~~---~~~v~~~e 313 (364)
T KOG1269|consen 239 GDALPAETFNTDVFDLLKSFGFEHLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLKP---GGKVLILE 313 (364)
T ss_pred cccccceeccccHHHHHhhccchhhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccCc---CceEEehh
Confidence 44443 1 000 111111 1222233332 2457778888899 89999999
Q ss_pred eecCCCCCC
Q 043623 295 IVVNEKKDK 303 (359)
Q Consensus 295 ~~~~~~~~~ 303 (359)
.+.......
T Consensus 314 ~~~~~p~gs 322 (364)
T KOG1269|consen 314 YIRGLPEGS 322 (364)
T ss_pred hcCcCCcCc
Confidence 887665544
No 440
>PHA01634 hypothetical protein
Probab=71.27 E-value=8.5 Score=30.62 Aligned_cols=39 Identities=18% Similarity=-0.020 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL 233 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a 233 (359)
.+++|+|||++.|.-++.++.+... +++.++. +...+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~ 67 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKW 67 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHH
Confidence 4689999999999999999887543 6788876 4444433
No 441
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=70.45 E-value=29 Score=34.55 Aligned_cols=68 Identities=12% Similarity=0.054 Sum_probs=42.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC----CCeEEEeec-hHHHhcCCC------CC-CceEEeCCCCC-CCC-------C
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP----SIKCSVLEL-PHVIADLPE------TD-NLKFIAGDMNQ-SIP-------S 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~i~~a~~------~~-rv~~~~~d~~~-~~~-------~ 252 (359)
.+..+|.|-.||+|.+.....+..- ++...|++. +.....++. .+ .+....+|-+. |.. .
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 3567999999999999887766442 377899997 444444332 11 34455555444 321 2
Q ss_pred ccEEEecc
Q 043623 253 ADAFLFKL 260 (359)
Q Consensus 253 ~D~i~~~~ 260 (359)
||.|+++-
T Consensus 265 ~D~viaNP 272 (489)
T COG0286 265 FDFVIANP 272 (489)
T ss_pred eeEEEeCC
Confidence 77766553
No 442
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=70.26 E-value=9 Score=35.11 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=47.2
Q ss_pred CCCceEEeCCCCCCCC------C-ccEEEecchh-ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee--cCCCCCCch
Q 043623 236 TDNLKFIAGDMNQSIP------S-ADAFLFKLIF-HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV--VNEKKDKPE 305 (359)
Q Consensus 236 ~~rv~~~~~d~~~~~~------~-~D~i~~~~vl-h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~--~~~~~~~~~ 305 (359)
.-+|+|+..|..+.++ . ||+|++++.+ |.+.++ +.++++| + .++|+|.. +.+-..+
T Consensus 199 ~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~---~-A~LvvEtaKfmvdLrKE-- 264 (289)
T PF14740_consen 199 NVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAP---D-AVLVVETAKFMVDLRKE-- 264 (289)
T ss_pred CcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCC---C-CEEEEEcchhheeCCHH--
Confidence 3456777777665322 2 9999887544 666654 4456898 4 56777763 1121111
Q ss_pred HHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623 306 ITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK 344 (359)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 344 (359)
.... -.+.+.++++++||+.+.
T Consensus 265 ---q~~~--------------F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 265 ---QLQE--------------FVKKVKELAKAAGFKPVT 286 (289)
T ss_pred ---HHHH--------------HHHHHHHHHHHCCCcccc
Confidence 1111 257789999999998654
No 443
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=70.24 E-value=5.5 Score=35.70 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=47.6
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++-+|-.. |+.|+.|||+..|+| ...+-.+|+.|...|++...+. -+..|+.-+....+.
T Consensus 20 ~vY~aLl~~-g~~tA~eis~~sgvP---~~kvY~vl~sLe~kG~v~~~~g------~P~~y~av~p~~~i~ 80 (247)
T COG1378 20 KVYLALLCL-GEATAKEISEASGVP---RPKVYDVLRSLEKKGLVEVIEG------RPKKYRAVPPEELIE 80 (247)
T ss_pred HHHHHHHHh-CCccHHHHHHHcCCC---chhHHHHHHHHHHCCCEEeeCC------CCceEEeCCHHHHHH
Confidence 344445443 799999999999995 7899999999999999998742 267899887655444
No 444
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=70.13 E-value=9.6 Score=26.96 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=31.8
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHH--hccCceeec
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLL--DHSGFFSTT 86 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L--~~~g~l~~~ 86 (359)
|++.|.. +++.|+++|++.+|+. +.-++-.|--+ -..|+--..
T Consensus 15 li~mL~r-p~GATi~ei~~atGWq---~HTvRgalsg~~kKklGl~i~s 59 (72)
T PF11994_consen 15 LIAMLRR-PEGATIAEICEATGWQ---PHTVRGALSGLLKKKLGLTITS 59 (72)
T ss_pred HHHHHcC-CCCCCHHHHHHhhCCc---hhhHHHHHHHHHHHhcCcEEEe
Confidence 4455655 3789999999999995 57777777777 666765544
No 445
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=70.04 E-value=36 Score=31.84 Aligned_cols=93 Identities=10% Similarity=0.164 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCc-hHHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhH
Q 043623 193 DGLSSLVEVGGGT-GSFARIISEA-FPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEV 269 (359)
Q Consensus 193 ~~~~~vlDvG~G~-G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~ 269 (359)
.++.+||-+|||. |.++..++++ ....+++++|. ++-.+.++..+.. +...+..+. ..+|+|+-.-- . ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~~~~-~g~d~viD~~G-~----~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDIPED-LAVDHAFECVG-G----RG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhhhhc-cCCcEEEECCC-C----Cc
Confidence 4578999999654 4455677775 55568888887 4444544432221 111111111 13788775432 1 00
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 270 CLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 270 ~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
....+..+.+.|++ ||+++++-.
T Consensus 235 ~~~~~~~~~~~l~~---~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRP---QGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcC---CcEEEEEee
Confidence 12457788889999 999988764
No 446
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=69.87 E-value=2.9 Score=29.57 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhc---CCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSAL---EFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~---~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+..++.++|+.+ +... ..+++--++.+|.+.|++++..
T Consensus 23 ~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 23 KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 789999999999 8711 1488888999999999999975
No 447
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.80 E-value=10 Score=32.02 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=31.8
Q ss_pred ccEEEecchhccCCh----------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 253 ADAFLFKLIFHDYDD----------EVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
.|+|+++++||+++. +...+++.+++++|+| +.++|..+..|-
T Consensus 51 ~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~----~allIW~tt~Pv 103 (183)
T cd01842 51 LDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI----ECLIVWNTAMPV 103 (183)
T ss_pred eeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC----ccEEEEecCCCC
Confidence 799999999999764 3355777788888888 466666665553
No 448
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=69.68 E-value=11 Score=36.64 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=56.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CCC---CccEEEe
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SIP---SADAFLF 258 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~~---~~D~i~~ 258 (359)
+..+.|+|.|.|.-...+....+. -.++.+|. ..+...... ..++.....-|.+ |.+ +||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 467888887766544444333333 35777787 334333221 1222222213333 322 3999999
Q ss_pred cchhccCChhH-HHHHHHHHH-HhcCCCCCCceEEEEeeec
Q 043623 259 KLIFHDYDDEV-CLKLLKNCR-EAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 259 ~~vlh~~~d~~-~~~iL~~~~-~~L~p~~~gG~lli~e~~~ 297 (359)
.++||+..... ...+.+... ...++ |+.++|++...
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~ 318 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGT 318 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCC
Confidence 99999986543 233444444 45577 88999987643
No 449
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=69.44 E-value=4.2 Score=36.63 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=40.8
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
-.|++.|.++ |.+++++||+.+++ ++.-+||=|+.|...|++.+..
T Consensus 8 ~~Il~~l~~~-g~v~v~eLa~~~~V---S~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 8 QKILELLKEK-GKVSVEELAELFGV---SEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHHc-CcEEHHHHHHHhCC---CHHHHHHhHHHHHHCCcEEEEe
Confidence 4467778775 79999999999999 6899999999999999999986
No 450
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=69.41 E-value=32 Score=34.03 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=59.5
Q ss_pred CeEEEEcCCchHHHHHHH--HHCCCCeEEEeec-hHHHhcCCC------C-----------C-CceEEeCCCCCCCCCcc
Q 043623 196 SSLVEVGGGTGSFARIIS--EAFPSIKCSVLEL-PHVIADLPE------T-----------D-NLKFIAGDMNQSIPSAD 254 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~--~~~p~~~~~~~D~-~~~i~~a~~------~-----------~-rv~~~~~d~~~~~~~~D 254 (359)
.+|.-||.|...+....+ +..++.+++++|. ++-++..+. . . ++.+ ..|..+.....|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i~~ad 80 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHVAEAD 80 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHHhcCC
Confidence 367888999887776644 4345678999998 555555332 0 0 1111 111211233578
Q ss_pred EEEec-chhcc---------CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 255 AFLFK-LIFHD---------YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 255 ~i~~~-~vlh~---------~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
+++.+ .+... .+-.-+..+.+.+.+.|++ |.++|.+...+..
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~----~~lVv~~STvp~G 132 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS----DKIVVEKSTVPVK 132 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC----CcEEEEeCCCCCC
Confidence 88665 32321 1222356788888899987 7888888776655
No 451
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=68.80 E-value=4.6 Score=33.07 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=34.5
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCce
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFF 83 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l 83 (359)
-|+++|-.+ +.+|-++||+.+|+ +...+|++|..|...+++
T Consensus 5 ~v~d~L~~~-~~~~dedLa~~l~i---~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 5 LVLDALMRN-GCVTEEDLAELLGI---KQKQLRKILYLLYDEKLI 45 (147)
T ss_pred eehHHHHhc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHhhhcc
Confidence 467777654 78999999999999 689999999999995543
No 452
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=68.68 E-value=4.7 Score=33.98 Aligned_cols=46 Identities=30% Similarity=0.387 Sum_probs=38.7
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.-|+++|... |-+|-++||+.+|+ ...-++++|..|...|++....
T Consensus 21 ~~v~~~l~~k-ge~tDeela~~l~i---~~~~vrriL~~L~e~~li~~~k 66 (176)
T COG1675 21 VLVVDALLEK-GELTDEELAELLGI---KKNEVRRILYALYEDGLISYRK 66 (176)
T ss_pred hHHHHHHHhc-CCcChHHHHHHhCc---cHHHHHHHHHHHHhCCceEEEe
Confidence 3456777653 46999999999999 7899999999999999999664
No 453
>PF13518 HTH_28: Helix-turn-helix domain
Probab=68.58 E-value=4.1 Score=26.30 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=26.2
Q ss_pred CCHHHHHhhcCCCCCCcchHHHHHHHHhccCc
Q 043623 51 VTLPELVSALEFQPNKRNCLRRIMRLLDHSGF 82 (359)
Q Consensus 51 ~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~ 82 (359)
.|..++|+.+|+ +...+.+|++.....|+
T Consensus 13 ~s~~~~a~~~gi---s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGI---SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCC---CHhHHHHHHHHHHhcCH
Confidence 499999999999 67999999999888775
No 454
>PRK08507 prephenate dehydrogenase; Validated
Probab=68.44 E-value=17 Score=33.02 Aligned_cols=79 Identities=11% Similarity=0.118 Sum_probs=45.3
Q ss_pred eEEEEcCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHHH
Q 043623 197 SLVEVGGGT--GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKL 273 (359)
Q Consensus 197 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~i 273 (359)
+|.=||+|. |.++..+.+.....+++++|. ++..+.+....-+.. ..+.. ...++|+|+++- ++....++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~~-~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSFE-ELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCHH-HHhcCCEEEEeC-----cHHHHHHH
Confidence 466678775 345555555544457888887 554444432221111 11211 122489888874 55667788
Q ss_pred HHHHHHhcCC
Q 043623 274 LKNCREAVAS 283 (359)
Q Consensus 274 L~~~~~~L~p 283 (359)
+..+.. +++
T Consensus 75 ~~~l~~-l~~ 83 (275)
T PRK08507 75 LPKLLD-IKE 83 (275)
T ss_pred HHHHhc-cCC
Confidence 888888 887
No 455
>PRK12423 LexA repressor; Provisional
Probab=68.20 E-value=5.8 Score=34.33 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=32.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
-+-|..|||+.+|+. ++..+++.|+.|...|+++...
T Consensus 24 ~~Ps~~eia~~~g~~--s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 24 QPPSLAEIAQAFGFA--SRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEecC
Confidence 356999999999963 4678899999999999999885
No 456
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=68.12 E-value=6.9 Score=30.85 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=50.1
Q ss_pred HHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhcCCCCChhHHHHHhcCccccchhhh
Q 043623 55 ELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHY 134 (359)
Q Consensus 55 ~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (359)
+||+.+++ +-+-+-.+++++.-+||++..+ |...+|+.|+.++.......+..+.-..- ...+....
T Consensus 2 ~La~~l~~---eiDdL~p~~eAaelLgf~~~~~---------Gdi~LT~~G~~f~~a~~~~rK~if~~~l~-~~~Pl~~~ 68 (120)
T PF09821_consen 2 QLADELHL---EIDDLLPIVEAAELLGFAEVEE---------GDIRLTPLGRRFAEADIDERKEIFREQLL-RHVPLAAH 68 (120)
T ss_pred chHHHhCC---cHHHHHHHHHHHHHcCCeeecC---------CcEEeccchHHHHHCChHHHHHHHHHHHH-hcCCHHHH
Confidence 47888999 6788999999999999999985 78999999997775543334444432211 11233345
Q ss_pred HHHHHc
Q 043623 135 LSRWLR 140 (359)
Q Consensus 135 L~~~l~ 140 (359)
+...++
T Consensus 69 I~~~L~ 74 (120)
T PF09821_consen 69 IRRVLR 74 (120)
T ss_pred HHHHHH
Confidence 556665
No 457
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=68.04 E-value=17 Score=29.67 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=30.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ 248 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~ 248 (359)
..-|+|+|=|+|..=-++.+.+|+-++.++|..-..--....+--.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 478999999999999999999999999999962111100012333566777765
No 458
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=67.05 E-value=8 Score=33.23 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=32.7
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+.|-.+||+.+|+ .+..+.|+|+.|...|++...+
T Consensus 168 ~~t~~~lA~~lG~---tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIVGC---SREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 7899999999999 6799999999999999999885
No 459
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.94 E-value=26 Score=32.56 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=68.9
Q ss_pred EEEEcCCchHHHHHHHHHCCCCeE-EEeec-hHHHhcCCC-CCCceEEeCCCCC----CCCCccEEEecchhccCC----
Q 043623 198 LVEVGGGTGSFARIISEAFPSIKC-SVLEL-PHVIADLPE-TDNLKFIAGDMNQ----SIPSADAFLFKLIFHDYD---- 266 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~i~~a~~-~~rv~~~~~d~~~----~~~~~D~i~~~~vlh~~~---- 266 (359)
|+|+=||.|.+...+.+.. .++ ...|. +..++.-+. .+. .++.+|+.+ ..+++|+++...-+..++
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 5899999999999998764 554 45777 444443332 122 445567765 245688887765544443
Q ss_pred -----hhHHHHHHHHHHH---hcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623 267 -----DEVCLKLLKNCRE---AVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA 338 (359)
Q Consensus 267 -----d~~~~~iL~~~~~---~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a 338 (359)
|+ .-.++....+ .++| +++|+|.+..-... ..+ ....+|.+.|++.
T Consensus 78 ~~~~~d~-r~~L~~~~~r~i~~~~P-----~~~v~ENV~~l~~~------------------~~~--~~~~~i~~~l~~~ 131 (315)
T TIGR00675 78 RKGFEDT-RGTLFFEIVRILKEKKP-----KFFLLENVKGLVSH------------------DKG--RTFKVIIETLEEL 131 (315)
T ss_pred cCCCCCc-hhhHHHHHHHHHhhcCC-----CEEEeeccHHHHhc------------------ccc--hHHHHHHHHHHhC
Confidence 22 2233333333 4466 67787775321100 011 2467788888999
Q ss_pred CCceee
Q 043623 339 GFTSYK 344 (359)
Q Consensus 339 Gf~~~~ 344 (359)
||.+..
T Consensus 132 GY~v~~ 137 (315)
T TIGR00675 132 GYKVYY 137 (315)
T ss_pred CCEEEE
Confidence 998644
No 460
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=66.81 E-value=6.2 Score=30.73 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=37.7
Q ss_pred cccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 42 DIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 42 ~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.+|.++ ||.+..+|++.++++ . ..++|+- =-.|.|++.+ .|.|.||+.|+
T Consensus 66 ~~L~~~-Gp~~~~~l~~~~~~~----~-A~~IL~~-N~YGWFeRv~--------rGvY~LT~~G~ 115 (118)
T PF09929_consen 66 AALAEH-GPSRPADLRKATGVP----K-ATSILRD-NHYGWFERVE--------RGVYALTPAGR 115 (118)
T ss_pred HHHHHc-CCCCHHHHHHhcCCC----h-HHHHHHh-Ccccceeeec--------cceEecCcchh
Confidence 456654 899999999999993 3 3334332 3578999998 59999999876
No 461
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=66.63 E-value=5.9 Score=24.49 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDH 79 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~ 79 (359)
.+.++++||+.+|+ ++..+.|..+....
T Consensus 7 ~~~~l~~iA~~~g~---S~~~f~r~Fk~~~g 34 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF---SPSYFSRLFKKETG 34 (42)
T ss_dssp SS--HHHHHHHHTS----HHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHHHHHHC
Confidence 57999999999999 68999988876543
No 462
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=66.60 E-value=62 Score=29.71 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=52.1
Q ss_pred CCCeEEEEc-CCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCC-CCccEEEecchhccCChhHH
Q 043623 194 GLSSLVEVG-GGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSI-PSADAFLFKLIFHDYDDEVC 270 (359)
Q Consensus 194 ~~~~vlDvG-~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~-~~~D~i~~~~vlh~~~d~~~ 270 (359)
+..+||-+| ||.|.++..+++...-..++++|. ++-++.+... .+ .|..+.. ..+|+|+-+-- .+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~--i~~~~~~~~g~Dvvid~~G-----~~-- 211 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EV--LDPEKDPRRDYRAIYDASG-----DP-- 211 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cc--cChhhccCCCCCEEEECCC-----CH--
Confidence 356788888 456778888888764334666776 4445444321 11 1111111 24888876532 22
Q ss_pred HHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 271 LKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 271 ~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
..+..+.+.|++ +|+++++-..
T Consensus 212 -~~~~~~~~~l~~---~G~iv~~G~~ 233 (308)
T TIGR01202 212 -SLIDTLVRRLAK---GGEIVLAGFY 233 (308)
T ss_pred -HHHHHHHHhhhc---CcEEEEEeec
Confidence 346778888999 9999987653
No 463
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=66.49 E-value=6.4 Score=34.82 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=39.2
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.|++.|...++-.+..+||+++|+ ++..+++=++.|.+.|++....
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGV---SRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecc
Confidence 467777652378999999999999 6789999999999999999875
No 464
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=66.33 E-value=8.8 Score=34.22 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=43.8
Q ss_pred HHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 32 LKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
|...+.-|.|..= +.--+-.+||+++|+ +...+|.-|+.|.+.|+|+...+ .|.|..+
T Consensus 19 i~~~I~~g~~~~G---~~LP~EreLae~fgV---SR~~vREAl~~L~a~Glve~r~G-------~Gt~V~~ 76 (241)
T COG2186 19 IGALIVSGELPPG---DRLPSERELAERFGV---SRTVVREALKRLEAKGLVEIRQG-------SGTFVRP 76 (241)
T ss_pred HHHHHHcCCCCCC---CCCCCHHHHHHHHCC---CcHHHHHHHHHHHHCCCeeecCC-------CceEecC
Confidence 4445555555421 133467899999999 68999999999999999998863 6888875
No 465
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=65.92 E-value=8.6 Score=32.44 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
-|.|-++||+.+|+ .+..+.|.|+.|...|++....
T Consensus 142 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 142 LRLSHQAIAEAIGS---TRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 37899999999999 6899999999999999999885
No 466
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=65.85 E-value=4.2 Score=25.45 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHH
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRR 72 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~ 72 (359)
++..|++.|.. ++..+..+||+.+|++ +..+.+
T Consensus 4 ~D~~Il~~Lq~-d~r~s~~~la~~lglS---~~~v~~ 36 (42)
T PF13404_consen 4 LDRKILRLLQE-DGRRSYAELAEELGLS---ESTVRR 36 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS----HHHHHH
T ss_pred HHHHHHHHHHH-cCCccHHHHHHHHCcC---HHHHHH
Confidence 34567777766 3899999999999994 444443
No 467
>PRK10736 hypothetical protein; Provisional
Probab=65.52 E-value=8.1 Score=36.82 Aligned_cols=45 Identities=4% Similarity=-0.009 Sum_probs=39.5
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
..|++.|.. .|.++++|+.++|+ +...+...|-.|.-.|++....
T Consensus 311 ~~v~~~l~~--~~~~iD~L~~~~~l---~~~~v~~~L~~LEl~G~v~~~~ 355 (374)
T PRK10736 311 PELLANVGD--EVTPVDVVAERAGQ---PVPEVVTQLLELELAGWIAAVP 355 (374)
T ss_pred HHHHHhcCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEEcC
Confidence 457777764 68999999999999 5789999999999999999986
No 468
>PF13814 Replic_Relax: Replication-relaxation
Probab=65.47 E-value=8.7 Score=32.58 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=46.2
Q ss_pred ccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccC-CCCC-CCceEecCccchhhh
Q 043623 43 IIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHN-SREE-ENEAYALTSASKLLL 109 (359)
Q Consensus 43 ~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~~~-~~~~~~~t~~~~~l~ 109 (359)
.|.++ +.+|.++|+..+......+..+++.|+.|...|+|......- ...+ .+..|.+|+.|..+.
T Consensus 3 ~L~~~-r~lt~~Qi~~l~~~~~~~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l 70 (191)
T PF13814_consen 3 LLARH-RFLTTDQIARLLFPSSKSERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLL 70 (191)
T ss_pred hHHHh-cCcCHHHHHHHHcCCCcchHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHH
Confidence 34444 789999999999995322237999999999999999875200 0001 235789999887444
No 469
>PRK13239 alkylmercury lyase; Provisional
Probab=65.25 E-value=4.5 Score=35.04 Aligned_cols=37 Identities=22% Similarity=0.474 Sum_probs=28.5
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHh
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLD 78 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~ 78 (359)
.-|+..|+. |.|.|+++||+.+|+ +...++..|+.|.
T Consensus 25 ~~llr~la~-G~pvt~~~lA~~~~~---~~~~v~~~L~~l~ 61 (206)
T PRK13239 25 VPLLRLLAK-GRPVSVTTLAAALGW---PVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHhCC---CHHHHHHHHHhCC
Confidence 345566774 799999999999999 5677777776654
No 470
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=65.03 E-value=11 Score=32.88 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=33.8
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|..++..+||+.+|+ +..-+|.-|+.|...|+|+...
T Consensus 32 G~~L~e~~La~~lgV---SRtpVREAL~~L~~eGLV~~~~ 68 (221)
T PRK11414 32 GARLITKNLAEQLGM---SITPVREALLRLVSVNALSVAP 68 (221)
T ss_pred CCccCHHHHHHHHCC---CchhHHHHHHHHHHCCCEEecC
Confidence 577888999999999 6889999999999999999876
No 471
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=64.59 E-value=12 Score=29.58 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchh
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKL 107 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~ 107 (359)
-|.|.++||..++- +..-++.-|..+...|+++..+ ++.|.++...++
T Consensus 52 ipy~~e~LA~~~~~---~~~~V~~AL~~f~k~glIe~~e--------d~~i~i~~~~~~ 99 (121)
T PF09681_consen 52 IPYTAEMLALEFDR---PVDTVRLALAVFQKLGLIEIDE--------DGVIYIPNWEKH 99 (121)
T ss_pred CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec--------CCeEEeecHHHH
Confidence 69999999999998 5799999999999999999986 588888765433
No 472
>PRK13699 putative methylase; Provisional
Probab=64.14 E-value=32 Score=30.33 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred ceEEeCCCCC---CCCC--ccEEEec-------------chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 239 LKFIAGDMNQ---SIPS--ADAFLFK-------------LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 239 v~~~~~d~~~---~~~~--~D~i~~~-------------~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
.+++.+|..+ .+|+ +|+|+.. ..-.....+-....+.+++++||| ||.+++.-...
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKp---gg~l~if~~~~--- 75 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKK---DALMVSFYGWN--- 75 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCC---CCEEEEEeccc---
Q ss_pred CCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEE
Q 043623 301 KDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKIT 346 (359)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 346 (359)
....+..+++++||++....
T Consensus 76 --------------------------~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 76 --------------------------RVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred --------------------------cHHHHHHHHHHCCCEEeeEE
No 473
>PTZ00357 methyltransferase; Provisional
Probab=63.60 E-value=41 Score=34.70 Aligned_cols=127 Identities=11% Similarity=0.125 Sum_probs=71.8
Q ss_pred ChhHhhhhChHHHHHHHHHhhcCcc-chH------------HH------HHhcccc--cCCCCeEEEEcCCchHHHHHHH
Q 043623 155 NIWGYAEQNHEFNNLFNQGLASDSQ-MAK------------LI------IKDCKHI--FDGLSSLVEVGGGTGSFARIIS 213 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~f~~~~~~~~~-~~~------------~l------~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~ 213 (359)
.-|+-+++|+-.-..|.+++...-. +.. .+ +...+.. ......|+-+|+|-|-+....+
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 4477788888777777777654210 000 00 0011100 0122468999999999988776
Q ss_pred HHCC----CCeEEEeec-hHHH----hcC-CC----------CCCceEEeCCCCC-CCC-------------CccEEEec
Q 043623 214 EAFP----SIKCSVLEL-PHVI----ADL-PE----------TDNLKFIAGDMNQ-SIP-------------SADAFLFK 259 (359)
Q Consensus 214 ~~~p----~~~~~~~D~-~~~i----~~a-~~----------~~rv~~~~~d~~~-~~~-------------~~D~i~~~ 259 (359)
++.. .+++.+++- |+.+ .+- .. .++|+++..||.+ ..+ .+|++++-
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh
Confidence 6543 346677775 3421 111 11 3569999999987 322 37887764
Q ss_pred chhccCChhH-HHHHHHHHHHhcC
Q 043623 260 LIFHDYDDEV-CLKLLKNCREAVA 282 (359)
Q Consensus 260 ~vlh~~~d~~-~~~iL~~~~~~L~ 282 (359)
.|--+.|++ ..+-|..+.+.||
T Consensus 800 -LLGSFGDNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 800 -LLGSLGDNELSPECLEAFHAQLE 822 (1072)
T ss_pred -hhcccccccCCHHHHHHHHHhhh
Confidence 344444433 3355666666665
No 474
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=62.86 E-value=5.9 Score=36.47 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=33.0
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHH-HHhccCceeecc
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMR-LLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~-~L~~~g~l~~~~ 87 (359)
+++.+++++|+.+|. ++..++++++ .|...|++..++
T Consensus 253 ~~~~~~~~ia~~lg~---~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 253 GGPVGLKTLAAALGE---DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CCcccHHHHHHHhCC---CcchHHHhhhHHHHHcCCcccCC
Confidence 478999999999999 6789999999 799999998664
No 475
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=62.85 E-value=12 Score=33.49 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=33.8
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|..+ +-.+||+.+|+ +..-+|.-|+.|...|+|+...
T Consensus 28 G~~LPsE~eLa~~~gV---SRtpVREAL~~L~~eGlV~~~~ 65 (251)
T PRK09990 28 GQALPSERRLCEKLGF---SRSALREGLTVLRGRGIIETAQ 65 (251)
T ss_pred CCcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC
Confidence 5678 78999999999 6899999999999999999886
No 476
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=62.52 E-value=10 Score=32.15 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccc
Q 043623 51 VTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKV 88 (359)
Q Consensus 51 ~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 88 (359)
.|-.+||+.+ |+ ++..++|.++.|+..|++.+.+.
T Consensus 71 pSN~~La~r~~G~---s~~tlrR~l~~LveaGLI~rrDS 106 (177)
T PF03428_consen 71 PSNAQLAERLNGM---SERTLRRHLARLVEAGLIVRRDS 106 (177)
T ss_pred cCHHHHHHHHcCC---CHHHHHHHHHHHHHCCCeeeccC
Confidence 4679999999 99 57999999999999999999863
No 477
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=62.41 E-value=11 Score=33.15 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=33.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
-|+|-++||+.+|+ .+..+.|.|+.|...|++...+
T Consensus 183 ~~lt~~~iA~~lG~---sr~tvsR~l~~l~~~g~I~~~~ 218 (235)
T PRK11161 183 LTMTRGDIGNYLGL---TVETISRLLGRFQKSGMLAVKG 218 (235)
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 37899999999999 6799999999999999999985
No 478
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=61.87 E-value=18 Score=28.13 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=53.3
Q ss_pred CchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCC---C----CCC--CccEEEecchhccCChhHHHHH
Q 043623 204 GTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMN---Q----SIP--SADAFLFKLIFHDYDDEVCLKL 273 (359)
Q Consensus 204 G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~---~----~~~--~~D~i~~~~vlh~~~d~~~~~i 273 (359)
|.|.++..+++... .++++.|. +.-.+.+++..--.++..+-. + ..+ .+|+++-+-. . ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~---~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S---GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S---HHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----c---HHH
Confidence 56899999999887 89999998 444554443221112222111 1 122 4888876632 1 246
Q ss_pred HHHHHHhcCCCCCCceEEEEeeec
Q 043623 274 LKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 274 L~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
++.+.+.++| +|+++++-...
T Consensus 72 ~~~~~~~l~~---~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRP---GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEE---EEEEEEESSTS
T ss_pred HHHHHHHhcc---CCEEEEEEccC
Confidence 8888999999 99999987765
No 479
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=61.71 E-value=6.7 Score=27.90 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST 85 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 85 (359)
...|..|||+.+|+ ++..++.++..+...|.+..
T Consensus 31 eGlS~kEIAe~LGI---S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGR---TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHhcCcccchHHH
Confidence 46999999999999 67999999998888887653
No 480
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=61.38 E-value=5.6 Score=25.54 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=22.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGF 82 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~ 82 (359)
++.++..+.+ +.|..+||+.+|+ ++.-+.+|++.....|+
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgv---s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGV---SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS----HHHHHHHHT-------
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCc---CHHHHHHHHHHcccccc
Confidence 3444455543 6999999999999 68999999988766653
No 481
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=61.31 E-value=13 Score=33.21 Aligned_cols=45 Identities=18% Similarity=0.362 Sum_probs=37.4
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 48 GRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 48 ~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
|..+ +-.+||+++|+ +..-+|.-|+.|.+.|+|+.... .|.|...
T Consensus 31 G~~LpsE~eLa~~lgV---SRtpVREAL~~L~~eGlv~~~~~-------~G~~V~~ 76 (254)
T PRK09464 31 GEKLPPERELAKQFDV---SRPSLREAIQRLEAKGLLLRRQG-------GGTFVQS 76 (254)
T ss_pred CCcCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEecC-------ceeEEec
Confidence 4566 88999999999 68999999999999999998762 4556554
No 482
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=61.11 E-value=71 Score=29.91 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec----hHHHhcCCCCCCceEEe---CCCC--CCCCCccEEEecchh
Q 043623 193 DGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL----PHVIADLPETDNLKFIA---GDMN--QSIPSADAFLFKLIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~----~~~i~~a~~~~rv~~~~---~d~~--~~~~~~D~i~~~~vl 262 (359)
.++.+||-+|+|. |.++..+++.. +.++++++. ++-.+.+++ -.++++. .+.. .....+|+++-.--
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~-~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE-LGATYVNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH-cCCEEecCCccchhhhhhcCCCCEEEECcC-
Confidence 3567888888654 67777788875 458888874 334443332 1112211 1111 01124787776532
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
.. ..+..+.+.|++ +|+++++....
T Consensus 248 ----~~---~~~~~~~~~l~~---~G~~v~~G~~~ 272 (355)
T cd08230 248 ----VP---PLAFEALPALAP---NGVVILFGVPG 272 (355)
T ss_pred ----CH---HHHHHHHHHccC---CcEEEEEecCC
Confidence 11 357778888999 89998876543
No 483
>PRK00215 LexA repressor; Validated
Probab=60.92 E-value=12 Score=32.39 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=33.3
Q ss_pred CCCCCHHHHHhhcCC-CCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPVTLPELVSALEF-QPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~-~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+.+.|..|||+.+|+ + ...+.++|+.|...|++.+..
T Consensus 21 ~~~~s~~ela~~~~~~~---~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 21 GYPPSRREIADALGLRS---PSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCCHHHHHHHhCCCC---hHHHHHHHHHHHHCCCEEeCC
Confidence 467899999999999 5 578999999999999999885
No 484
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=60.88 E-value=6.3 Score=29.52 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=32.7
Q ss_pred HHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHh
Q 043623 33 KCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLD 78 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~ 78 (359)
..+.+++|+..|-. ++.|-.|||+.+|+ +...+.|+=+.|.
T Consensus 40 ~l~~R~~i~~~Ll~--~~~tQrEIa~~lGi---S~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLN--GNMSQREIASKLGV---SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHhCC---ChhhhhHHHhhcc
Confidence 45678999998875 78999999999999 5677776666554
No 485
>CHL00194 ycf39 Ycf39; Provisional
Probab=60.53 E-value=1.3e+02 Score=27.60 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=38.9
Q ss_pred eEEEEcCCchHHHHHHHHHC--CCCeEEEeech-HHHhcCCCCCCceEEeCCCCCC------CCCccEEEec
Q 043623 197 SLVEVGGGTGSFARIISEAF--PSIKCSVLELP-HVIADLPETDNLKFIAGDMNQS------IPSADAFLFK 259 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~-~~i~~a~~~~rv~~~~~d~~~~------~~~~D~i~~~ 259 (359)
+|| |=||||..+..++++. .+.+++++... ...... ...+++++.+|+.++ +.+.|+|+..
T Consensus 2 kIl-VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 2 SLL-VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL-KEWGAELVYGDLSLPETLPPSFKGVTAIIDA 71 (317)
T ss_pred EEE-EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH-hhcCCEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence 344 5678888888877654 35578888763 221111 134789999999873 2357888764
No 486
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=60.46 E-value=27 Score=30.70 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=32.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
-+.|-++||+.+|+ .+..+.|.|+.|...|+++..+
T Consensus 178 i~lt~~~IA~~lGi---sretlsR~L~~L~~~GlI~~~~ 213 (230)
T PRK09391 178 LPMSRRDIADYLGL---TIETVSRALSQLQDRGLIGLSG 213 (230)
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 36899999999999 5799999999999999998763
No 487
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.43 E-value=25 Score=34.06 Aligned_cols=104 Identities=17% Similarity=0.300 Sum_probs=70.2
Q ss_pred CCCeEEEEc-CCch------HHHHHHHHHCCCCeEEEeec--hHHHhcCCC---CCCceEEeCCCCC-CCC---------
Q 043623 194 GLSSLVEVG-GGTG------SFARIISEAFPSIKCSVLEL--PHVIADLPE---TDNLKFIAGDMNQ-SIP--------- 251 (359)
Q Consensus 194 ~~~~vlDvG-~G~G------~~~~~l~~~~p~~~~~~~D~--~~~i~~a~~---~~rv~~~~~d~~~-~~~--------- 251 (359)
++..|+=|| =|+| -++..+.++.-..-.+..|. |.++++.+. .-+|.|..-+-.. |..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 467888888 3554 34444455434444688887 888887764 4455555443222 321
Q ss_pred ---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 252 ---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 252 ---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
.+|+++.--.=.+.-|++...=++++++.++| .-.|+|+|......
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVvDam~GQd 227 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVVDAMIGQD 227 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEEecccchH
Confidence 27999988776555577788889999999999 89999999876543
No 488
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=60.42 E-value=3.7 Score=35.02 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=39.4
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
--|.+.|..+ +.+++++||+.+++ ++.-+||=|..|...|++.+..
T Consensus 10 ~~Il~~l~~~-~~~~~~~La~~~~v---S~~TiRRDl~~L~~~g~~~r~~ 55 (185)
T PRK04424 10 KALQELIEEN-PFITDEELAEKFGV---SIQTIRLDRMELGIPELRERIK 55 (185)
T ss_pred HHHHHHHHHC-CCEEHHHHHHHHCc---CHHHHHHHHHHHhcchHHHHHH
Confidence 3456667664 78999999999999 6799999999999999999884
No 489
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=60.40 E-value=14 Score=33.19 Aligned_cols=37 Identities=19% Similarity=0.431 Sum_probs=33.3
Q ss_pred CCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|..+ |..+||+++|+ +..-+|.-|+.|.+.|+|+...
T Consensus 30 G~~LpsE~eLa~~~gV---SRtpVREAL~~L~~eGlV~~~~ 67 (257)
T PRK10225 30 GERLPPEREIAEMLDV---TRTVVREALIMLEIKGLVEVRR 67 (257)
T ss_pred CCcCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 4677 68899999999 6899999999999999999876
No 490
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=60.19 E-value=28 Score=32.28 Aligned_cols=91 Identities=13% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC---CCCCccEEEecchhccCCh
Q 043623 195 LSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ---SIPSADAFLFKLIFHDYDD 267 (359)
Q Consensus 195 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~---~~~~~D~i~~~~vlh~~~d 267 (359)
+.+|.-||+|. |..+..++-- =+.+++.+|+ .+-+++... ..||+...-++.. ....+|+++-.=.+---..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 46788899886 5666666653 3558999998 556665554 6777776665544 4567999876643322233
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEE
Q 043623 268 EVCLKLLKNCREAVASSDGREKVI 291 (359)
Q Consensus 268 ~~~~~iL~~~~~~L~p~~~gG~ll 291 (359)
+. -+.++..+.||| |+.|+
T Consensus 247 Pk--Lvt~e~vk~Mkp---GsViv 265 (371)
T COG0686 247 PK--LVTREMVKQMKP---GSVIV 265 (371)
T ss_pred ce--ehhHHHHHhcCC---CcEEE
Confidence 32 347888889999 55443
No 491
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=60.12 E-value=1.2e+02 Score=26.50 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeC---CCCC-----CCCCccEEEecchh
Q 043623 193 DGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAG---DMNQ-----SIPSADAFLFKLIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~---d~~~-----~~~~~D~i~~~~vl 262 (359)
.++.+||..|+|. |..+..+++... .++++.+. ++..+.++...--.++.. +..+ ....+|+++.+-
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~-- 209 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAV-- 209 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECC--
Confidence 5678999999985 777778887754 67888876 333333322110011110 1100 122488887542
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
... ..+..+.+.|++ +|+++.+....
T Consensus 210 ---~~~---~~~~~~~~~l~~---~G~~v~~~~~~ 235 (271)
T cd05188 210 ---GGP---ETLAQALRLLRP---GGRIVVVGGTS 235 (271)
T ss_pred ---CCH---HHHHHHHHhccc---CCEEEEEccCC
Confidence 221 336667778888 89988776543
No 492
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=59.98 E-value=14 Score=29.34 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=37.2
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
.=-|+.+||..+++ ++.-++|-.+.|...||+..... .|.|....
T Consensus 34 kLPSvRelA~~~~V---NpnTv~raY~eLE~eG~i~t~rg-------~G~fV~~~ 78 (125)
T COG1725 34 KLPSVRELAKDLGV---NPNTVQRAYQELEREGIVETKRG-------KGTFVTED 78 (125)
T ss_pred CCCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEecC-------eeEEEcCC
Confidence 44689999999999 67999999999999999998862 46665543
No 493
>PRK11642 exoribonuclease R; Provisional
Probab=59.78 E-value=9.9 Score=40.28 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=37.2
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCC-CcchHHHHHHHHhccCceeecc
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPN-KRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~-~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|++.|...++|++..+|++.++++.. ....+++.|+.|...|.+....
T Consensus 24 Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~ 72 (813)
T PRK11642 24 ILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR 72 (813)
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC
Confidence 44555443489999999999999531 2356999999999999998765
No 494
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=59.39 E-value=44 Score=30.33 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=46.6
Q ss_pred eEEEEcCCc--hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHHH
Q 043623 197 SLVEVGGGT--GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKL 273 (359)
Q Consensus 197 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~i 273 (359)
+|.=||+|. |.++..+.++ +.+++++|. ++..+.+.....+.....+. +....+|+|+++- +.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 466678764 3444455443 458999997 55555543322222111111 1233589998884 45566778
Q ss_pred HHHHHHhcCC
Q 043623 274 LKNCREAVAS 283 (359)
Q Consensus 274 L~~~~~~L~p 283 (359)
++++...++|
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 8999888887
No 495
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=59.24 E-value=13 Score=32.94 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=47.2
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
.|...++-|.+..=. .=-|-.+||+++|+ +.--+++=|+.|+..|++.+... .|.|...+
T Consensus 15 ~i~~~I~~G~~~~G~---~LPsE~eLa~~f~V---SR~TvRkAL~~L~~eGli~r~~G-------~GtfV~~~ 74 (236)
T COG2188 15 DIRQRIESGELPPGD---KLPSERELAEQFGV---SRMTVRKALDELVEEGLIVRRQG-------KGTFVASP 74 (236)
T ss_pred HHHHHHHhCCCCCCC---CCCCHHHHHHHHCC---cHHHHHHHHHHHHHCCcEEEEec-------CeeEEcCc
Confidence 455566666665321 34577899999999 68899999999999999999973 68898886
No 496
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=59.14 E-value=97 Score=30.06 Aligned_cols=99 Identities=13% Similarity=0.179 Sum_probs=53.5
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEe-------------CCC--CCCCCCccEEEec
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIA-------------GDM--NQSIPSADAFLFK 259 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~-------------~d~--~~~~~~~D~i~~~ 259 (359)
.+|.=||.|.-......+-...+.+++++|. ++.++..+. .++.+.. +.. ..+....|+|+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR-GEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-CCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 4688888887655554433333568999998 555554321 1111100 000 0122247888766
Q ss_pred chhc-----cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 260 LIFH-----DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 260 ~vlh-----~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
---- ..+-..+...++.+.+.+++ |.++|.+...+.
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~----g~iVI~~STv~p 123 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKK----GDLVILESTSPV 123 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCC----CCEEEEeCCCCC
Confidence 3210 00113455677888888988 677777766554
No 497
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=59.03 E-value=16 Score=32.34 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=43.1
Q ss_pred HHHHHHHcCcccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 31 FLKCAVELGIPDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
.|+..+..|-+. + |..+ |-.+||+++|+ +..-+|.-|+.|.+.|+|+..+. .|.|..+
T Consensus 15 ~l~~~I~~g~l~--p--G~~LPsE~eLae~~gV---SRt~VReAL~~L~~eGlv~~~~g-------~G~~V~~ 73 (239)
T PRK04984 15 YIIESIWNNRFP--P--GSILPAERELSELIGV---TRTTLREVLQRLARDGWLTIQHG-------KPTKVNN 73 (239)
T ss_pred HHHHHHHcCCCC--C--CCcCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeCC-------CeeEeCC
Confidence 344444445443 2 4667 78899999999 78999999999999999998862 4666544
No 498
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=58.66 E-value=13 Score=31.62 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=32.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
-+.|-++||..+|+ .+..+.|.|..|...|++....
T Consensus 148 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~~ 183 (202)
T PRK13918 148 IYATHDELAAAVGS---VRETVTKVIGELSREGYIRSGY 183 (202)
T ss_pred ecCCHHHHHHHhCc---cHHHHHHHHHHHHHCCCEEcCC
Confidence 37899999999999 6799999999999999999764
No 499
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=57.82 E-value=17 Score=26.27 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=41.3
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
++..+. +.++|-++||+.+|+ +...+..-++.|...|+=..... +..|++...
T Consensus 11 ll~~~~--~~~~SGe~La~~Lgi---SRtaVwK~Iq~Lr~~G~~I~s~~-------~kGY~L~~~ 63 (79)
T COG1654 11 LLLLLT--GNFVSGEKLAEELGI---SRTAVWKHIQQLREEGVDIESVR-------GKGYLLPQL 63 (79)
T ss_pred HHHHcC--CCcccHHHHHHHHCc---cHHHHHHHHHHHHHhCCceEecC-------CCceeccCc
Confidence 344444 379999999999999 68999999999999997665542 347888754
No 500
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=57.77 E-value=11 Score=27.73 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.=+|+..||+++++ .-...++.|+.|...|++....
T Consensus 40 K~ITps~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 40 KIVTPYTLASKYGI---KISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred cEEcHHHHHHHhcc---hHHHHHHHHHHHHHCCCEEEEe
Confidence 56899999999999 6789999999999999987653
Done!