Query 043623
Match_columns 359
No_of_seqs 170 out of 2048
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 11:18:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 3.2E-56 1.1E-60 420.4 31.0 327 14-359 7-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 8.9E-53 3E-57 398.5 34.4 344 9-359 14-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 1.8E-51 6.3E-56 390.1 32.8 342 11-359 17-366 (368)
4 1fp2_A Isoflavone O-methyltran 100.0 4E-51 1.4E-55 385.9 31.9 349 2-359 3-352 (352)
5 3lst_A CALO1 methyltransferase 100.0 1.2E-50 4.2E-55 381.9 33.7 326 9-359 16-347 (348)
6 3gwz_A MMCR; methyltransferase 100.0 7.9E-50 2.7E-54 379.2 29.9 326 9-359 32-368 (369)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 1.1E-49 3.9E-54 376.8 30.1 350 9-359 4-358 (358)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 9E-49 3.1E-53 372.5 30.0 340 9-359 16-372 (372)
9 3i53_A O-methyltransferase; CO 100.0 3.3E-49 1.1E-53 369.9 23.2 316 16-359 6-331 (332)
10 2ip2_A Probable phenazine-spec 100.0 4.8E-48 1.7E-52 362.2 29.8 318 14-359 7-333 (334)
11 3dp7_A SAM-dependent methyltra 100.0 8.6E-47 3E-51 357.5 26.2 335 1-359 1-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 7.9E-46 2.7E-50 352.4 24.7 324 12-359 13-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 1.2E-44 4E-49 342.6 26.1 320 16-359 20-355 (360)
14 3mcz_A O-methyltransferase; ad 100.0 8.2E-44 2.8E-48 335.8 28.0 314 11-359 21-348 (352)
15 2r3s_A Uncharacterized protein 100.0 1.2E-43 4.3E-48 332.2 27.1 312 17-358 8-333 (335)
16 1x19_A CRTF-related protein; m 100.0 1.8E-43 6.3E-48 334.3 28.3 312 9-359 24-358 (359)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 3.8E-21 1.3E-25 173.1 17.3 164 192-359 68-256 (261)
18 3dtn_A Putative methyltransfer 99.8 2.5E-19 8.4E-24 158.4 16.5 163 192-359 42-225 (234)
19 3dh0_A SAM dependent methyltra 99.8 5.3E-18 1.8E-22 148.2 14.7 155 182-359 27-192 (219)
20 3hnr_A Probable methyltransfer 99.8 4.4E-18 1.5E-22 148.8 13.9 168 182-359 35-211 (220)
21 3pfg_A N-methyltransferase; N, 99.8 6.6E-18 2.3E-22 151.9 13.0 163 192-359 48-248 (263)
22 3dlc_A Putative S-adenosyl-L-m 99.7 1.6E-18 5.6E-23 151.0 8.5 163 183-357 35-212 (219)
23 3ujc_A Phosphoethanolamine N-m 99.7 1.2E-17 4E-22 150.1 14.3 155 182-349 45-207 (266)
24 3bus_A REBM, methyltransferase 99.7 3E-17 1E-21 148.3 16.1 156 182-349 51-217 (273)
25 1ve3_A Hypothetical protein PH 99.7 2.6E-18 9E-23 150.8 8.0 160 193-359 37-226 (227)
26 3ou2_A SAM-dependent methyltra 99.7 5.7E-17 2E-21 141.2 15.1 160 182-349 35-206 (218)
27 1nkv_A Hypothetical protein YJ 99.7 3.9E-17 1.3E-21 146.1 14.0 152 182-348 26-187 (256)
28 1vl5_A Unknown conserved prote 99.7 5.9E-17 2E-21 145.5 15.1 152 182-348 27-190 (260)
29 1kpg_A CFA synthase;, cyclopro 99.7 6.6E-17 2.3E-21 147.3 15.0 161 182-349 54-229 (287)
30 3bxo_A N,N-dimethyltransferase 99.7 2.9E-17 9.9E-22 145.3 12.1 162 193-359 39-238 (239)
31 2o57_A Putative sarcosine dime 99.7 7.3E-17 2.5E-21 147.7 15.1 153 182-349 68-235 (297)
32 3ocj_A Putative exported prote 99.7 2.4E-17 8.1E-22 151.8 10.7 165 192-359 116-303 (305)
33 2qe6_A Uncharacterized protein 99.7 1.3E-16 4.4E-21 144.6 15.0 140 194-344 77-238 (274)
34 3h2b_A SAM-dependent methyltra 99.7 3.7E-17 1.3E-21 141.1 10.3 138 195-350 42-184 (203)
35 1xxl_A YCGJ protein; structura 99.7 8.4E-17 2.9E-21 142.7 12.9 152 182-348 11-174 (239)
36 3mgg_A Methyltransferase; NYSG 99.7 5E-17 1.7E-21 147.2 11.6 152 192-348 35-198 (276)
37 3vc1_A Geranyl diphosphate 2-C 99.7 2.3E-16 7.7E-21 145.7 15.8 154 182-349 106-270 (312)
38 3dli_A Methyltransferase; PSI- 99.7 2.5E-16 8.5E-21 139.7 15.4 141 192-349 39-185 (240)
39 1xtp_A LMAJ004091AAA; SGPP, st 99.7 7.6E-17 2.6E-21 144.0 12.0 148 183-349 84-239 (254)
40 3l8d_A Methyltransferase; stru 99.7 1.3E-16 4.5E-21 141.4 13.5 143 192-348 51-200 (242)
41 3lcc_A Putative methyl chlorid 99.7 5.9E-17 2E-21 143.2 10.3 132 195-349 67-208 (235)
42 3hem_A Cyclopropane-fatty-acyl 99.7 1.4E-16 4.8E-21 146.3 13.1 163 182-350 62-245 (302)
43 3f4k_A Putative methyltransfer 99.7 1.8E-16 6.3E-21 141.8 13.5 143 192-349 44-197 (257)
44 2fk8_A Methoxy mycolic acid sy 99.7 1.9E-16 6.6E-21 146.4 13.8 162 182-349 80-255 (318)
45 3kkz_A Uncharacterized protein 99.7 1.7E-16 5.8E-21 143.1 12.6 143 192-349 44-197 (267)
46 3g2m_A PCZA361.24; SAM-depende 99.7 1.1E-16 3.6E-21 146.9 10.7 169 182-358 73-290 (299)
47 3i9f_A Putative type 11 methyl 99.7 8.5E-17 2.9E-21 134.8 9.2 147 184-358 9-158 (170)
48 4fsd_A Arsenic methyltransfera 99.7 3E-16 1E-20 149.0 14.0 145 192-347 81-250 (383)
49 3ege_A Putative methyltransfer 99.7 3.7E-16 1.3E-20 140.5 13.6 151 182-348 24-178 (261)
50 3e23_A Uncharacterized protein 99.7 1.4E-16 4.8E-21 138.4 10.4 138 192-348 41-182 (211)
51 2ex4_A Adrenal gland protein A 99.7 1.2E-16 4E-21 141.9 10.0 138 194-349 79-226 (241)
52 2qm3_A Predicted methyltransfe 99.7 1.2E-15 4E-20 144.4 17.0 215 39-297 47-280 (373)
53 3sm3_A SAM-dependent methyltra 99.7 5.2E-16 1.8E-20 136.6 12.8 148 192-347 28-206 (235)
54 3gu3_A Methyltransferase; alph 99.7 4.6E-16 1.6E-20 141.7 12.4 151 192-347 20-189 (284)
55 1pjz_A Thiopurine S-methyltran 99.7 3E-16 1E-20 135.8 10.5 134 192-348 20-176 (203)
56 3g5l_A Putative S-adenosylmeth 99.7 3.6E-16 1.2E-20 139.7 11.1 157 183-348 35-216 (253)
57 3ccf_A Cyclopropane-fatty-acyl 99.7 1.1E-15 3.7E-20 138.7 14.2 153 182-348 47-210 (279)
58 2p7i_A Hypothetical protein; p 99.7 8.6E-16 2.9E-20 136.3 13.1 144 193-348 41-199 (250)
59 3jwg_A HEN1, methyltransferase 99.6 8E-16 2.7E-20 134.4 12.3 144 192-345 27-189 (219)
60 3bkw_A MLL3908 protein, S-aden 99.6 2.3E-15 7.9E-20 133.3 15.2 159 182-348 33-214 (243)
61 2p35_A Trans-aconitate 2-methy 99.6 7E-16 2.4E-20 138.0 10.9 151 182-342 23-184 (259)
62 3bkx_A SAM-dependent methyltra 99.6 1.9E-15 6.4E-20 136.6 13.5 159 182-348 33-219 (275)
63 3jwh_A HEN1; methyltransferase 99.6 5.6E-16 1.9E-20 135.2 9.7 140 192-345 27-189 (217)
64 3cgg_A SAM-dependent methyltra 99.6 8.6E-15 2.9E-19 124.8 16.4 133 182-348 37-175 (195)
65 2xvm_A Tellurite resistance pr 99.6 2.4E-15 8.1E-20 129.0 12.9 143 182-348 22-173 (199)
66 3g07_A 7SK snRNA methylphospha 99.6 2E-16 6.8E-21 144.7 5.1 146 193-348 45-269 (292)
67 1y8c_A S-adenosylmethionine-de 99.6 1.3E-15 4.3E-20 135.1 10.1 161 194-359 37-244 (246)
68 4htf_A S-adenosylmethionine-de 99.6 6.3E-16 2.1E-20 140.7 8.2 146 194-349 68-233 (285)
69 3d2l_A SAM-dependent methyltra 99.6 3.8E-15 1.3E-19 131.9 12.7 95 192-292 31-135 (243)
70 3e8s_A Putative SAM dependent 99.6 9.2E-16 3.1E-20 134.2 8.3 153 182-347 42-208 (227)
71 3ggd_A SAM-dependent methyltra 99.6 2.6E-15 9.1E-20 133.4 10.6 150 192-348 54-219 (245)
72 2yqz_A Hypothetical protein TT 99.6 7.9E-15 2.7E-19 131.4 12.4 145 192-346 37-194 (263)
73 4hg2_A Methyltransferase type 99.6 7.9E-15 2.7E-19 131.4 11.4 99 193-299 38-140 (257)
74 1vlm_A SAM-dependent methyltra 99.6 1.3E-14 4.4E-19 126.8 11.9 136 194-348 47-188 (219)
75 2zfu_A Nucleomethylin, cerebra 99.6 2.7E-14 9.1E-19 124.3 13.6 131 183-359 57-190 (215)
76 3cc8_A Putative methyltransfer 99.6 3.4E-14 1.2E-18 124.3 13.6 152 182-349 23-186 (230)
77 2gb4_A Thiopurine S-methyltran 99.6 1.9E-14 6.4E-19 128.6 11.3 133 193-348 67-227 (252)
78 2p8j_A S-adenosylmethionine-de 99.5 4.5E-15 1.5E-19 128.4 6.6 151 192-346 21-181 (209)
79 3g5t_A Trans-aconitate 3-methy 99.5 2.4E-14 8.1E-19 131.2 11.7 140 193-341 35-197 (299)
80 2aot_A HMT, histamine N-methyl 99.5 2.6E-14 8.9E-19 130.5 11.7 140 194-345 52-218 (292)
81 3m70_A Tellurite resistance pr 99.5 4E-14 1.4E-18 128.8 12.5 141 182-346 110-258 (286)
82 2i62_A Nicotinamide N-methyltr 99.5 9.9E-15 3.4E-19 130.9 7.6 140 193-349 55-240 (265)
83 3q87_B N6 adenine specific DNA 99.5 3.1E-13 1.1E-17 113.4 15.2 127 193-357 22-159 (170)
84 1ri5_A MRNA capping enzyme; me 99.5 5.5E-14 1.9E-18 128.2 11.2 153 192-348 62-250 (298)
85 1fbn_A MJ fibrillarin homologu 99.5 1.7E-13 5.8E-18 120.7 12.8 139 192-358 72-226 (230)
86 3thr_A Glycine N-methyltransfe 99.5 1E-14 3.5E-19 133.0 4.8 107 182-295 47-176 (293)
87 3e05_A Precorrin-6Y C5,15-meth 99.5 2.9E-13 9.8E-18 116.8 13.6 124 183-345 31-164 (204)
88 3grz_A L11 mtase, ribosomal pr 99.5 1.1E-13 3.8E-18 119.4 10.8 130 192-358 58-195 (205)
89 1wzn_A SAM-dependent methyltra 99.5 3.9E-13 1.3E-17 119.7 14.7 97 192-293 39-144 (252)
90 2a14_A Indolethylamine N-methy 99.5 1.1E-14 3.7E-19 131.1 3.7 139 193-348 54-238 (263)
91 2kw5_A SLR1183 protein; struct 99.5 2.2E-13 7.6E-18 117.1 11.8 134 193-348 29-171 (202)
92 4e2x_A TCAB9; kijanose, tetron 99.5 7.9E-14 2.7E-18 133.7 9.4 149 182-349 97-254 (416)
93 3giw_A Protein of unknown func 99.5 2E-13 6.8E-18 122.0 10.9 141 194-344 78-243 (277)
94 2gs9_A Hypothetical protein TT 99.5 2.1E-13 7.2E-18 118.1 10.4 128 193-339 35-171 (211)
95 3mq2_A 16S rRNA methyltransfer 99.5 1.4E-13 4.7E-18 120.1 9.1 150 183-349 18-185 (218)
96 2g72_A Phenylethanolamine N-me 99.4 9.8E-14 3.4E-18 126.4 6.8 138 194-348 71-256 (289)
97 2b3t_A Protein methyltransfera 99.4 1.5E-12 5.2E-17 117.8 13.9 135 193-359 108-275 (276)
98 3p2e_A 16S rRNA methylase; met 99.4 2E-13 6.9E-18 119.9 7.5 146 193-349 23-186 (225)
99 3ofk_A Nodulation protein S; N 99.4 3.2E-13 1.1E-17 117.4 8.3 100 192-296 49-156 (216)
100 1dus_A MJ0882; hypothetical pr 99.4 1.8E-12 6.3E-17 110.1 12.2 141 182-359 42-193 (194)
101 3uwp_A Histone-lysine N-methyl 99.4 5.5E-13 1.9E-17 125.1 9.2 113 182-302 163-296 (438)
102 1nt2_A Fibrillarin-like PRE-rR 99.4 3E-12 1E-16 111.1 13.2 137 192-359 55-209 (210)
103 4dzr_A Protein-(glutamine-N5) 99.4 2.2E-13 7.4E-18 117.9 5.9 135 193-358 29-203 (215)
104 3hm2_A Precorrin-6Y C5,15-meth 99.4 7.8E-13 2.7E-17 111.1 9.0 123 183-345 16-150 (178)
105 4df3_A Fibrillarin-like rRNA/T 99.4 1.1E-12 3.9E-17 114.8 10.2 140 192-357 75-229 (233)
106 3orh_A Guanidinoacetate N-meth 99.4 6.5E-14 2.2E-18 124.0 1.9 133 193-345 59-207 (236)
107 2ipx_A RRNA 2'-O-methyltransfe 99.4 1.5E-12 5.2E-17 114.7 10.0 140 192-358 75-230 (233)
108 3htx_A HEN1; HEN1, small RNA m 99.4 3E-12 1E-16 128.7 13.0 101 192-296 719-836 (950)
109 2pxx_A Uncharacterized protein 99.4 1.3E-12 4.5E-17 113.0 9.1 101 192-296 40-161 (215)
110 2vdw_A Vaccinia virus capping 99.4 2.1E-12 7E-17 118.4 10.7 151 194-348 48-246 (302)
111 3iv6_A Putative Zn-dependent a 99.3 2E-12 6.7E-17 115.6 8.9 106 182-295 35-149 (261)
112 1g8a_A Fibrillarin-like PRE-rR 99.3 2.6E-11 8.8E-16 106.2 15.9 141 192-359 71-226 (227)
113 1af7_A Chemotaxis receptor met 99.3 1.1E-12 3.9E-17 118.1 7.2 96 194-292 105-250 (274)
114 2h00_A Methyltransferase 10 do 99.3 2.2E-13 7.5E-18 121.7 2.5 144 194-348 65-238 (254)
115 3evz_A Methyltransferase; NYSG 99.3 6.4E-12 2.2E-16 110.3 11.7 128 192-350 53-208 (230)
116 1zx0_A Guanidinoacetate N-meth 99.3 3.5E-13 1.2E-17 119.1 3.1 100 193-296 59-172 (236)
117 3kr9_A SAM-dependent methyltra 99.3 6.2E-12 2.1E-16 109.6 10.8 130 192-358 13-156 (225)
118 3njr_A Precorrin-6Y methylase; 99.3 9.4E-12 3.2E-16 107.5 11.7 122 183-346 46-178 (204)
119 1xdz_A Methyltransferase GIDB; 99.3 1.8E-12 6.2E-17 114.8 7.3 121 193-348 69-202 (240)
120 3id6_C Fibrillarin-like rRNA/T 99.3 1.5E-11 5.1E-16 107.9 13.0 141 192-358 74-229 (232)
121 3mti_A RRNA methylase; SAM-dep 99.3 5.8E-12 2E-16 106.7 10.0 132 192-348 20-169 (185)
122 1yb2_A Hypothetical protein TA 99.3 1.7E-12 5.8E-17 117.4 6.7 125 183-347 101-236 (275)
123 1yzh_A TRNA (guanine-N(7)-)-me 99.3 8.6E-12 2.9E-16 108.4 10.9 97 194-293 41-155 (214)
124 3mb5_A SAM-dependent methyltra 99.3 8.2E-12 2.8E-16 111.4 11.0 126 183-348 84-222 (255)
125 3lec_A NADB-rossmann superfami 99.3 1.1E-11 3.8E-16 108.2 11.3 130 192-358 19-162 (230)
126 3m33_A Uncharacterized protein 99.3 1.4E-12 4.9E-17 114.3 5.6 114 193-348 47-167 (226)
127 2nxc_A L11 mtase, ribosomal pr 99.3 8.5E-12 2.9E-16 111.5 10.5 129 192-359 118-254 (254)
128 3fpf_A Mtnas, putative unchara 99.3 5.3E-12 1.8E-16 114.1 8.8 95 192-294 120-222 (298)
129 1jsx_A Glucose-inhibited divis 99.3 3.9E-12 1.3E-16 109.7 7.6 91 194-293 65-164 (207)
130 3bwc_A Spermidine synthase; SA 99.3 8E-12 2.8E-16 114.6 10.0 129 193-348 94-240 (304)
131 3g89_A Ribosomal RNA small sub 99.3 2.6E-12 8.8E-17 114.5 6.2 121 193-348 79-212 (249)
132 3eey_A Putative rRNA methylase 99.3 5E-12 1.7E-16 108.2 7.6 134 192-348 20-173 (197)
133 4dcm_A Ribosomal RNA large sub 99.3 8.2E-12 2.8E-16 117.8 9.4 107 183-294 213-334 (375)
134 3lpm_A Putative methyltransfer 99.3 2.4E-11 8.1E-16 108.8 12.0 124 192-348 46-201 (259)
135 3bgv_A MRNA CAP guanine-N7 met 99.3 1.7E-11 5.8E-16 112.8 11.0 111 182-296 22-157 (313)
136 1l3i_A Precorrin-6Y methyltran 99.3 1.5E-11 5E-16 104.2 9.4 119 184-342 25-154 (192)
137 2frn_A Hypothetical protein PH 99.3 1.8E-11 6.2E-16 110.8 10.5 121 192-344 123-253 (278)
138 2pjd_A Ribosomal RNA small sub 99.3 5.1E-12 1.7E-16 118.0 6.6 109 182-295 186-304 (343)
139 3gnl_A Uncharacterized protein 99.2 2.9E-11 1E-15 106.4 10.5 130 192-358 19-162 (244)
140 3fzg_A 16S rRNA methylase; met 99.2 1.4E-11 4.7E-16 103.5 7.7 96 192-294 47-152 (200)
141 2pwy_A TRNA (adenine-N(1)-)-me 99.2 2.1E-11 7.1E-16 108.8 8.7 125 183-347 87-223 (258)
142 2avn_A Ubiquinone/menaquinone 99.2 1.6E-11 5.4E-16 110.0 7.8 149 193-350 53-215 (260)
143 2y1w_A Histone-arginine methyl 99.2 1.3E-11 4.6E-16 115.3 7.5 106 182-293 40-154 (348)
144 2ld4_A Anamorsin; methyltransf 99.2 1.8E-11 6.3E-16 102.8 7.3 109 192-340 10-128 (176)
145 3b3j_A Histone-arginine methyl 99.2 1.9E-11 6.6E-16 118.8 7.7 105 182-292 148-261 (480)
146 2yxd_A Probable cobalt-precorr 99.2 5.7E-11 2E-15 99.8 9.6 120 183-345 26-154 (183)
147 1u2z_A Histone-lysine N-methyl 99.2 5E-11 1.7E-15 113.7 10.3 111 182-300 232-365 (433)
148 2fca_A TRNA (guanine-N(7)-)-me 99.2 4.2E-11 1.4E-15 104.1 8.7 97 194-294 38-153 (213)
149 1o54_A SAM-dependent O-methylt 99.2 4.8E-11 1.6E-15 107.9 8.7 125 183-347 103-238 (277)
150 3dxy_A TRNA (guanine-N(7)-)-me 99.2 1.9E-11 6.4E-16 106.7 5.6 98 194-294 34-150 (218)
151 3hp7_A Hemolysin, putative; st 99.2 1.3E-10 4.5E-15 105.1 11.2 142 183-349 75-233 (291)
152 3duw_A OMT, O-methyltransferas 99.2 4.7E-11 1.6E-15 104.2 7.8 99 192-298 56-171 (223)
153 2plw_A Ribosomal RNA methyltra 99.2 1.6E-10 5.5E-15 99.0 10.9 104 183-294 12-154 (201)
154 1ej0_A FTSJ; methyltransferase 99.2 1.6E-10 5.4E-15 96.3 10.5 106 183-296 12-138 (180)
155 2bm8_A Cephalosporin hydroxyla 99.1 1.2E-10 4.1E-15 102.8 9.8 94 194-295 81-188 (236)
156 3r3h_A O-methyltransferase, SA 99.1 6.4E-11 2.2E-15 105.0 7.9 99 193-299 59-175 (242)
157 2yxe_A Protein-L-isoaspartate 99.1 7.8E-11 2.7E-15 102.1 8.1 100 183-295 68-178 (215)
158 1o9g_A RRNA methyltransferase; 99.1 8.3E-11 2.8E-15 104.6 8.4 100 194-296 51-216 (250)
159 3lbf_A Protein-L-isoaspartate 99.1 8.5E-11 2.9E-15 101.5 8.2 99 183-296 68-176 (210)
160 3ntv_A MW1564 protein; rossman 99.1 4.3E-11 1.5E-15 105.4 6.2 99 192-298 69-180 (232)
161 3p9n_A Possible methyltransfer 99.1 1.5E-10 5.2E-15 98.3 9.2 100 193-297 43-156 (189)
162 3tfw_A Putative O-methyltransf 99.1 5E-11 1.7E-15 106.1 6.2 99 192-298 61-174 (248)
163 2fyt_A Protein arginine N-meth 99.1 1.5E-10 5.1E-15 107.9 9.5 96 192-291 62-168 (340)
164 3q7e_A Protein arginine N-meth 99.1 7.2E-11 2.5E-15 110.4 7.1 97 192-292 64-171 (349)
165 3u81_A Catechol O-methyltransf 99.1 5.4E-11 1.8E-15 103.8 5.6 100 192-297 56-173 (221)
166 3dmg_A Probable ribosomal RNA 99.1 1.7E-10 5.7E-15 109.0 9.2 96 194-294 233-340 (381)
167 3ckk_A TRNA (guanine-N(7)-)-me 99.1 1.6E-10 5.6E-15 101.9 8.6 98 193-294 45-168 (235)
168 2ozv_A Hypothetical protein AT 99.1 1.3E-10 4.5E-15 104.1 7.7 99 192-293 34-169 (260)
169 3gjy_A Spermidine synthase; AP 99.1 1.1E-10 3.6E-15 106.9 7.0 98 195-295 90-201 (317)
170 1p91_A Ribosomal RNA large sub 99.1 1.7E-10 5.8E-15 103.6 8.0 93 193-297 84-181 (269)
171 3r0q_C Probable protein argini 99.1 1.1E-10 3.9E-15 110.2 7.0 101 192-296 61-171 (376)
172 1vbf_A 231AA long hypothetical 99.1 2.1E-10 7.2E-15 100.6 8.3 98 183-295 61-166 (231)
173 2gpy_A O-methyltransferase; st 99.1 1.5E-10 5.2E-15 101.7 7.4 98 192-297 52-163 (233)
174 1nv8_A HEMK protein; class I a 99.1 2.5E-10 8.4E-15 103.7 8.7 94 194-292 123-247 (284)
175 3tr6_A O-methyltransferase; ce 99.1 9E-11 3.1E-15 102.5 5.5 98 193-298 63-178 (225)
176 1jg1_A PIMT;, protein-L-isoasp 99.1 1.6E-10 5.5E-15 101.8 7.1 100 182-295 81-190 (235)
177 3bzb_A Uncharacterized protein 99.1 5.8E-10 2E-14 101.0 10.9 98 192-293 77-204 (281)
178 3dr5_A Putative O-methyltransf 99.1 4.3E-10 1.5E-14 98.2 9.6 94 196-297 58-166 (221)
179 3lcv_B Sisomicin-gentamicin re 99.1 3E-10 1E-14 99.8 8.4 131 193-345 131-269 (281)
180 3opn_A Putative hemolysin; str 99.1 3.8E-11 1.3E-15 105.7 2.7 146 183-348 27-184 (232)
181 3sso_A Methyltransferase; macr 99.1 1.3E-10 4.4E-15 108.8 6.3 95 193-296 215-326 (419)
182 2b25_A Hypothetical protein; s 99.1 1.8E-10 6.1E-15 107.1 7.2 102 183-296 96-221 (336)
183 1g6q_1 HnRNP arginine N-methyl 99.1 4.7E-10 1.6E-14 104.0 9.8 97 192-292 36-143 (328)
184 3adn_A Spermidine synthase; am 99.1 2.3E-10 7.8E-15 104.3 7.4 99 193-294 82-198 (294)
185 1dl5_A Protein-L-isoaspartate 99.0 3E-10 1E-14 104.8 8.1 100 183-295 66-176 (317)
186 2vdv_E TRNA (guanine-N(7)-)-me 99.0 1.8E-10 6.1E-15 102.3 6.3 94 192-293 47-172 (246)
187 2hnk_A SAM-dependent O-methylt 99.0 4.2E-10 1.4E-14 99.3 8.4 98 192-297 58-184 (239)
188 1ixk_A Methyltransferase; open 99.0 6.9E-10 2.3E-14 102.2 10.0 103 192-297 116-249 (315)
189 1ws6_A Methyltransferase; stru 99.0 1.3E-10 4.5E-15 96.6 4.2 94 194-296 41-149 (171)
190 3c3p_A Methyltransferase; NP_9 99.0 1.7E-10 5.9E-15 99.7 4.9 97 193-297 55-163 (210)
191 2oxt_A Nucleoside-2'-O-methylt 99.0 1.1E-09 3.7E-14 98.3 9.7 97 192-295 72-186 (265)
192 3tma_A Methyltransferase; thum 99.0 1.8E-09 6.3E-14 101.0 11.7 101 192-295 201-318 (354)
193 2fhp_A Methylase, putative; al 99.0 3.5E-10 1.2E-14 95.5 5.8 98 193-297 43-157 (187)
194 3dou_A Ribosomal RNA large sub 99.0 7.6E-10 2.6E-14 94.4 7.9 104 182-295 14-140 (191)
195 2esr_A Methyltransferase; stru 99.0 1.7E-10 5.7E-15 96.9 3.6 98 193-297 30-141 (177)
196 2nyu_A Putative ribosomal RNA 99.0 1.5E-09 5.2E-14 92.4 9.6 97 192-295 20-146 (196)
197 1sui_A Caffeoyl-COA O-methyltr 99.0 3.9E-10 1.3E-14 100.2 6.1 97 193-297 78-193 (247)
198 2wa2_A Non-structural protein 99.0 1.1E-09 3.6E-14 98.9 8.8 97 192-295 80-194 (276)
199 2ift_A Putative methylase HI07 99.0 3.3E-10 1.1E-14 97.4 4.9 97 194-297 53-166 (201)
200 4hc4_A Protein arginine N-meth 99.0 1E-09 3.4E-14 103.0 8.4 94 194-291 83-186 (376)
201 1i9g_A Hypothetical protein RV 99.0 1.2E-09 4.3E-14 98.5 8.5 102 183-296 90-205 (280)
202 2pbf_A Protein-L-isoaspartate 99.0 1.8E-09 6.3E-14 94.2 9.2 93 192-295 78-194 (227)
203 3a27_A TYW2, uncharacterized p 99.0 9.9E-10 3.4E-14 99.0 7.6 99 192-299 117-224 (272)
204 3frh_A 16S rRNA methylase; met 99.0 2.5E-09 8.7E-14 93.1 9.6 95 193-295 104-206 (253)
205 2avd_A Catechol-O-methyltransf 98.9 6.4E-10 2.2E-14 97.3 5.7 98 192-297 67-182 (229)
206 1r18_A Protein-L-isoaspartate( 98.9 7.4E-10 2.5E-14 96.9 5.8 92 192-294 82-194 (227)
207 2yvl_A TRMI protein, hypotheti 98.9 3.9E-09 1.3E-13 93.3 10.6 100 183-296 82-192 (248)
208 2p41_A Type II methyltransfera 98.9 1.7E-09 5.8E-14 99.0 8.2 95 192-292 80-189 (305)
209 3gdh_A Trimethylguanosine synt 98.9 3.6E-11 1.2E-15 106.3 -3.1 136 194-352 78-223 (241)
210 1zq9_A Probable dimethyladenos 98.9 7.7E-10 2.6E-14 100.4 5.6 102 182-291 18-144 (285)
211 3c3y_A Pfomt, O-methyltransfer 98.9 9.9E-10 3.4E-14 97.0 5.8 97 192-296 68-183 (237)
212 4azs_A Methyltransferase WBDD; 98.9 4.4E-10 1.5E-14 111.8 3.8 101 192-297 64-176 (569)
213 3cbg_A O-methyltransferase; cy 98.9 5.6E-10 1.9E-14 98.2 4.0 98 193-298 71-186 (232)
214 2i7c_A Spermidine synthase; tr 98.9 1E-09 3.5E-14 99.5 5.7 98 193-293 77-191 (283)
215 1ne2_A Hypothetical protein TA 98.9 2E-09 6.7E-14 92.2 7.3 88 193-281 50-139 (200)
216 2fpo_A Methylase YHHF; structu 98.9 1.2E-09 4.1E-14 93.9 5.9 96 194-296 54-162 (202)
217 1iy9_A Spermidine synthase; ro 98.9 8.8E-10 3E-14 99.5 5.2 98 193-293 74-188 (275)
218 1i1n_A Protein-L-isoaspartate 98.9 2.9E-09 9.8E-14 93.0 7.9 93 192-295 75-183 (226)
219 1uir_A Polyamine aminopropyltr 98.9 1.3E-09 4.3E-14 100.4 5.8 99 193-294 76-195 (314)
220 2yxl_A PH0851 protein, 450AA l 98.9 8.3E-09 2.8E-13 99.7 11.8 104 192-298 257-393 (450)
221 1xj5_A Spermidine synthase 1; 98.9 1.1E-09 3.9E-14 101.4 5.5 98 193-293 119-234 (334)
222 1mjf_A Spermidine synthase; sp 98.9 1.3E-09 4.3E-14 98.8 5.5 97 193-293 74-192 (281)
223 2b2c_A Spermidine synthase; be 98.9 1.1E-09 3.9E-14 100.5 5.1 99 193-294 107-222 (314)
224 2o07_A Spermidine synthase; st 98.9 9.5E-10 3.3E-14 100.7 4.5 99 193-294 94-209 (304)
225 2pt6_A Spermidine synthase; tr 98.9 1.5E-09 5E-14 100.2 5.5 97 193-293 115-229 (321)
226 2cmg_A Spermidine synthase; tr 98.9 4.2E-09 1.4E-13 94.3 8.1 89 193-293 71-170 (262)
227 3k6r_A Putative transferase PH 98.9 5.7E-09 1.9E-13 93.9 8.5 120 192-343 123-252 (278)
228 1wy7_A Hypothetical protein PH 98.8 1.2E-08 4E-13 87.7 10.1 88 193-281 48-141 (207)
229 1inl_A Spermidine synthase; be 98.8 2.1E-09 7E-14 98.1 4.6 98 193-293 89-204 (296)
230 3tm4_A TRNA (guanine N2-)-meth 98.8 9.1E-09 3.1E-13 96.9 9.0 120 193-348 216-352 (373)
231 2igt_A SAM dependent methyltra 98.8 1.5E-08 5.1E-13 93.9 10.1 98 194-296 153-274 (332)
232 2h1r_A Dimethyladenosine trans 98.8 4.9E-09 1.7E-13 95.8 6.0 97 182-283 32-151 (299)
233 2xyq_A Putative 2'-O-methyl tr 98.8 2E-08 6.7E-13 90.9 9.2 116 192-346 61-195 (290)
234 3ajd_A Putative methyltransfer 98.8 8.4E-09 2.9E-13 93.0 6.8 104 192-298 81-215 (274)
235 2ih2_A Modification methylase 98.7 3.9E-08 1.3E-12 94.0 10.3 97 193-295 38-165 (421)
236 3m6w_A RRNA methylase; rRNA me 98.7 1.7E-08 5.8E-13 97.2 7.3 102 192-297 99-232 (464)
237 1qam_A ERMC' methyltransferase 98.7 2.5E-08 8.4E-13 88.4 7.1 88 182-273 20-114 (244)
238 2f8l_A Hypothetical protein LM 98.7 1.5E-08 5.1E-13 94.4 6.0 99 194-295 130-257 (344)
239 1yub_A Ermam, rRNA methyltrans 98.7 9.3E-09 3.2E-13 91.1 3.5 103 182-293 19-144 (245)
240 1sqg_A SUN protein, FMU protei 98.6 7E-08 2.4E-12 92.6 9.5 104 192-298 244-378 (429)
241 2frx_A Hypothetical protein YE 98.6 1.2E-07 4.1E-12 91.9 9.9 102 194-298 117-250 (479)
242 3m4x_A NOL1/NOP2/SUN family pr 98.6 3.6E-08 1.2E-12 94.7 6.2 103 192-297 103-237 (456)
243 3gru_A Dimethyladenosine trans 98.6 9E-08 3.1E-12 86.9 7.6 82 182-268 40-129 (295)
244 2yx1_A Hypothetical protein MJ 98.5 8.1E-08 2.8E-12 89.1 6.2 94 193-298 194-295 (336)
245 2b78_A Hypothetical protein SM 98.5 5.5E-08 1.9E-12 92.0 3.5 99 193-295 211-332 (385)
246 2as0_A Hypothetical protein PH 98.5 1.1E-07 3.8E-12 90.2 5.4 99 194-296 217-337 (396)
247 3ftd_A Dimethyladenosine trans 98.5 3.2E-07 1.1E-11 81.3 7.9 90 182-274 21-116 (249)
248 3c0k_A UPF0064 protein YCCW; P 98.5 2.1E-07 7.2E-12 88.3 7.1 99 193-295 219-340 (396)
249 4dmg_A Putative uncharacterize 98.4 2.9E-07 9.8E-12 87.1 7.4 99 193-296 213-328 (393)
250 1wxx_A TT1595, hypothetical pr 98.4 1.4E-07 4.7E-12 89.2 5.1 97 194-295 209-326 (382)
251 3k0b_A Predicted N6-adenine-sp 98.4 3.7E-07 1.3E-11 86.3 8.1 103 192-295 199-351 (393)
252 1uwv_A 23S rRNA (uracil-5-)-me 98.4 9.8E-07 3.3E-11 84.7 11.1 90 192-292 284-387 (433)
253 3b5i_A S-adenosyl-L-methionine 98.4 6.1E-06 2.1E-10 77.1 15.9 149 195-347 53-297 (374)
254 3ldg_A Putative uncharacterize 98.4 1.1E-06 3.9E-11 82.7 10.4 103 192-295 192-344 (384)
255 3fut_A Dimethyladenosine trans 98.4 4.2E-07 1.4E-11 81.4 7.0 89 182-276 37-133 (271)
256 4gqb_A Protein arginine N-meth 98.4 5.7E-07 1.9E-11 89.3 8.2 126 156-290 323-463 (637)
257 2okc_A Type I restriction enzy 98.4 2.6E-07 8.9E-12 89.0 5.6 100 193-295 170-308 (445)
258 1m6y_A S-adenosyl-methyltransf 98.3 3.5E-07 1.2E-11 83.2 5.2 77 182-260 16-106 (301)
259 3tqs_A Ribosomal RNA small sub 98.3 2.9E-07 9.8E-12 81.9 4.5 81 182-268 19-111 (255)
260 3uzu_A Ribosomal RNA small sub 98.3 1.4E-07 4.8E-12 85.0 2.5 69 182-252 32-106 (279)
261 3ldu_A Putative methylase; str 98.3 9.6E-07 3.3E-11 83.3 7.6 103 192-295 193-345 (385)
262 2qfm_A Spermine synthase; sper 98.3 5.9E-07 2E-11 83.1 5.5 97 193-293 187-313 (364)
263 2efj_A 3,7-dimethylxanthine me 98.3 7.4E-06 2.5E-10 76.7 12.9 149 195-346 53-290 (384)
264 1rjd_A PPM1P, carboxy methyl t 98.3 1.1E-05 3.9E-10 74.3 13.3 143 193-341 96-281 (334)
265 2jjq_A Uncharacterized RNA met 98.2 2E-06 7E-11 82.1 8.2 90 193-293 289-386 (425)
266 3v97_A Ribosomal RNA large sub 98.2 1.5E-06 5.1E-11 88.2 7.4 98 193-294 538-657 (703)
267 1qyr_A KSGA, high level kasuga 98.2 5.8E-07 2E-11 79.8 3.8 89 182-274 11-111 (252)
268 2k4m_A TR8_protein, UPF0146 pr 98.2 6.2E-06 2.1E-10 65.7 9.0 86 192-297 33-124 (153)
269 3o4f_A Spermidine synthase; am 98.2 1.9E-06 6.3E-11 77.7 6.5 97 193-293 82-197 (294)
270 2qy6_A UPF0209 protein YFCK; s 98.2 2E-06 6.7E-11 76.5 6.5 130 194-358 60-245 (257)
271 3evf_A RNA-directed RNA polyme 98.2 4.6E-06 1.6E-10 73.7 8.4 110 182-297 64-186 (277)
272 3ua3_A Protein arginine N-meth 98.2 2.3E-06 8E-11 85.0 6.9 126 156-291 378-531 (745)
273 2r6z_A UPF0341 protein in RSP 98.1 2.5E-06 8.5E-11 76.0 6.0 71 192-264 81-173 (258)
274 1m6e_X S-adenosyl-L-methionnin 98.0 3.9E-05 1.3E-09 71.2 11.3 149 194-345 51-277 (359)
275 3bt7_A TRNA (uracil-5-)-methyl 97.9 2.1E-06 7.3E-11 80.5 1.6 88 195-295 214-327 (369)
276 3v97_A Ribosomal RNA large sub 97.9 1.8E-05 6.1E-10 80.3 8.2 101 192-295 188-348 (703)
277 2b9e_A NOL1/NOP2/SUN domain fa 97.9 2.7E-05 9.1E-10 71.1 8.4 67 192-258 100-180 (309)
278 2dul_A N(2),N(2)-dimethylguano 97.9 7.1E-06 2.4E-10 77.1 4.4 92 194-294 47-164 (378)
279 3iei_A Leucine carboxyl methyl 97.9 0.00018 6.3E-09 66.1 13.7 146 194-348 90-281 (334)
280 3gcz_A Polyprotein; flavivirus 97.9 1.3E-05 4.6E-10 70.9 5.7 105 182-292 80-199 (282)
281 2uyo_A Hypothetical protein ML 97.8 9.2E-05 3.2E-09 67.5 9.5 144 193-343 101-274 (310)
282 3axs_A Probable N(2),N(2)-dime 97.8 1.6E-05 5.5E-10 74.8 4.4 93 193-294 51-158 (392)
283 2ar0_A M.ecoki, type I restric 97.8 4.4E-05 1.5E-09 75.1 7.6 100 193-295 168-313 (541)
284 2oyr_A UPF0341 protein YHIQ; a 97.6 3.9E-05 1.3E-09 68.1 4.7 77 184-264 78-176 (258)
285 4auk_A Ribosomal RNA large sub 97.6 0.00021 7.1E-09 66.1 9.4 69 192-262 209-280 (375)
286 3eld_A Methyltransferase; flav 97.5 0.00023 8E-09 63.4 8.1 106 182-293 71-190 (300)
287 1wg8_A Predicted S-adenosylmet 97.5 8.3E-05 2.8E-09 66.2 4.8 74 182-259 12-96 (285)
288 3s1s_A Restriction endonucleas 97.5 0.00024 8.2E-09 71.9 8.6 100 193-295 320-466 (878)
289 3c6k_A Spermine synthase; sper 97.4 9.3E-05 3.2E-09 68.7 4.7 96 193-292 204-329 (381)
290 3ll7_A Putative methyltransfer 97.4 3.7E-05 1.3E-09 72.6 1.9 66 192-259 91-170 (410)
291 3khk_A Type I restriction-modi 97.4 9.4E-05 3.2E-09 72.7 3.9 97 196-295 246-396 (544)
292 3lkd_A Type I restriction-modi 97.4 0.00029 9.8E-09 69.2 7.4 99 194-295 221-359 (542)
293 3p8z_A Mtase, non-structural p 97.2 0.0012 4.1E-08 56.7 8.7 105 182-292 68-184 (267)
294 3cvo_A Methyltransferase-like 97.1 0.0014 4.9E-08 55.6 8.1 90 193-296 29-155 (202)
295 2vz8_A Fatty acid synthase; tr 97.1 0.00014 4.7E-09 83.3 2.2 142 194-347 1240-1394(2512)
296 2px2_A Genome polyprotein [con 97.1 0.0017 6E-08 56.5 8.5 105 182-292 63-181 (269)
297 3lkz_A Non-structural protein 97.1 0.0018 6.3E-08 57.4 8.5 105 182-292 84-202 (321)
298 2heo_A Z-DNA binding protein 1 97.0 0.00025 8.5E-09 49.0 2.1 55 37-102 12-66 (67)
299 3b73_A PHIH1 repressor-like pr 96.7 0.00065 2.2E-08 51.8 2.6 62 37-110 15-78 (111)
300 2wk1_A NOVP; transferase, O-me 96.7 0.0044 1.5E-07 55.4 8.4 96 193-296 105-245 (282)
301 3tka_A Ribosomal RNA small sub 96.7 0.0023 8E-08 58.2 6.4 79 182-262 47-138 (347)
302 3vyw_A MNMC2; tRNA wobble urid 96.7 0.0048 1.7E-07 55.6 8.5 129 194-358 96-258 (308)
303 1y0u_A Arsenical resistance op 96.6 0.0013 4.5E-08 48.7 3.2 61 31-106 27-87 (96)
304 1xmk_A Double-stranded RNA-spe 96.5 0.0014 4.8E-08 46.5 2.5 59 38-106 14-73 (79)
305 2zwa_A Leucine carboxyl methyl 96.4 0.046 1.6E-06 55.3 14.5 148 194-348 107-309 (695)
306 3mq0_A Transcriptional repress 96.2 0.0021 7.2E-08 57.4 2.7 56 38-104 33-88 (275)
307 4fzv_A Putative methyltransfer 96.1 0.0093 3.2E-07 55.2 6.9 106 192-300 146-290 (359)
308 1r1u_A CZRA, repressor protein 95.9 0.017 6E-07 43.3 6.3 47 36-87 27-73 (106)
309 3pqk_A Biofilm growth-associat 95.9 0.0073 2.5E-07 45.0 4.1 60 35-104 23-82 (102)
310 3r4k_A Transcriptional regulat 95.8 0.0034 1.2E-07 55.5 2.5 57 38-104 9-65 (260)
311 3jth_A Transcription activator 95.8 0.0043 1.5E-07 45.9 2.6 64 31-104 19-82 (98)
312 1qgp_A Protein (double strande 95.7 0.0055 1.9E-07 43.4 2.7 58 37-103 16-75 (77)
313 1i4w_A Mitochondrial replicati 95.7 0.011 3.6E-07 54.7 5.3 82 195-276 59-165 (353)
314 1oyi_A Double-stranded RNA-bin 95.7 0.0063 2.1E-07 43.3 2.9 59 36-105 18-76 (82)
315 2xrn_A HTH-type transcriptiona 95.7 0.0051 1.7E-07 53.8 2.9 62 38-109 9-70 (241)
316 1qbj_A Protein (double-strande 95.7 0.0099 3.4E-07 42.4 3.8 62 37-107 12-75 (81)
317 2oqg_A Possible transcriptiona 95.7 0.0044 1.5E-07 47.1 2.1 61 36-106 22-82 (114)
318 3df8_A Possible HXLR family tr 95.6 0.0062 2.1E-07 46.4 2.7 74 16-109 17-93 (111)
319 1u2w_A CADC repressor, cadmium 95.6 0.007 2.4E-07 46.9 3.0 67 29-104 36-102 (122)
320 3r24_A NSP16, 2'-O-methyl tran 95.6 0.036 1.2E-06 49.2 7.7 92 192-293 107-216 (344)
321 3cuo_A Uncharacterized HTH-typ 95.5 0.0066 2.3E-07 44.7 2.6 63 34-105 23-85 (99)
322 1mkm_A ICLR transcriptional re 95.5 0.0077 2.6E-07 52.9 3.3 56 38-104 11-66 (249)
323 2jt1_A PEFI protein; solution 95.5 0.0057 1.9E-07 43.2 1.9 37 48-87 22-58 (77)
324 2kko_A Possible transcriptiona 95.5 0.023 8E-07 42.8 5.6 57 38-104 28-84 (108)
325 1xn7_A Hypothetical protein YH 95.4 0.0082 2.8E-07 42.5 2.7 43 40-86 7-49 (78)
326 2o0y_A Transcriptional regulat 95.4 0.0086 2.9E-07 52.9 3.5 56 38-104 26-81 (260)
327 4a5n_A Uncharacterized HTH-typ 95.4 0.012 4.2E-07 46.1 3.9 80 15-110 15-95 (131)
328 2hzt_A Putative HTH-type trans 95.3 0.015 5E-07 43.9 3.9 77 17-109 5-82 (107)
329 2g7u_A Transcriptional regulat 95.3 0.012 4E-07 52.0 3.9 61 38-110 17-77 (257)
330 3ufb_A Type I restriction-modi 95.3 0.058 2E-06 52.7 9.1 100 193-295 216-363 (530)
331 2k02_A Ferrous iron transport 95.3 0.0082 2.8E-07 43.4 2.2 44 40-87 7-50 (87)
332 3f6o_A Probable transcriptiona 95.3 0.0076 2.6E-07 46.3 2.2 67 30-106 13-79 (118)
333 2jsc_A Transcriptional regulat 95.2 0.0082 2.8E-07 46.2 2.3 61 34-104 20-80 (118)
334 3ech_A MEXR, multidrug resista 95.2 0.035 1.2E-06 43.7 6.1 93 11-109 8-105 (142)
335 1r7j_A Conserved hypothetical 95.2 0.015 5.1E-07 42.9 3.5 55 40-109 13-67 (95)
336 3f6v_A Possible transcriptiona 95.1 0.0086 2.9E-07 48.3 2.3 69 28-106 51-119 (151)
337 2ia2_A Putative transcriptiona 95.0 0.013 4.3E-07 52.0 3.1 56 38-105 24-79 (265)
338 1on2_A Transcriptional regulat 94.9 0.014 4.9E-07 46.1 3.0 50 49-109 21-70 (142)
339 2y75_A HTH-type transcriptiona 94.9 0.028 9.6E-07 43.8 4.5 47 49-104 25-71 (129)
340 3fm5_A Transcriptional regulat 94.8 0.035 1.2E-06 44.1 5.2 69 36-109 40-108 (150)
341 2htj_A P fimbrial regulatory p 94.8 0.026 8.7E-07 40.1 3.8 44 39-86 4-47 (81)
342 2fu4_A Ferric uptake regulatio 94.7 0.017 5.7E-07 41.2 2.5 48 37-87 19-72 (83)
343 3lwf_A LIN1550 protein, putati 94.6 0.039 1.3E-06 44.8 4.8 46 49-103 43-88 (159)
344 1r1t_A Transcriptional repress 94.6 0.021 7.2E-07 44.2 3.1 49 34-87 45-93 (122)
345 3bdd_A Regulatory protein MARR 94.6 0.081 2.8E-06 41.3 6.7 68 36-109 32-99 (142)
346 2wte_A CSA3; antiviral protein 94.5 0.015 5.3E-07 50.8 2.5 62 37-109 154-215 (244)
347 2fsw_A PG_0823 protein; alpha- 94.5 0.045 1.5E-06 41.1 4.8 80 14-109 13-93 (107)
348 1yyv_A Putative transcriptiona 94.4 0.022 7.5E-07 44.7 2.9 80 14-109 23-103 (131)
349 1z7u_A Hypothetical protein EF 94.4 0.017 5.8E-07 43.9 2.2 79 15-109 11-90 (112)
350 2f2e_A PA1607; transcription f 94.2 0.025 8.7E-07 45.2 3.0 77 16-109 14-90 (146)
351 3t8r_A Staphylococcus aureus C 94.1 0.046 1.6E-06 43.5 4.3 46 49-103 27-72 (143)
352 1ub9_A Hypothetical protein PH 94.1 0.014 4.6E-07 43.0 1.0 71 30-106 11-81 (100)
353 1s3j_A YUSO protein; structura 94.1 0.1 3.5E-06 41.5 6.4 66 38-109 40-105 (155)
354 2x4h_A Hypothetical protein SS 94.1 0.03 1E-06 44.0 3.1 50 48-109 29-78 (139)
355 3boq_A Transcriptional regulat 94.0 0.1 3.5E-06 41.8 6.2 68 37-109 49-116 (160)
356 1ylf_A RRF2 family protein; st 94.0 0.038 1.3E-06 44.3 3.5 60 30-104 15-74 (149)
357 3k69_A Putative transcription 93.9 0.06 2.1E-06 43.8 4.7 61 30-104 13-73 (162)
358 4hbl_A Transcriptional regulat 93.9 0.036 1.2E-06 44.1 3.4 68 36-109 42-109 (149)
359 2zig_A TTHA0409, putative modi 93.9 0.033 1.1E-06 50.1 3.5 40 193-234 234-274 (297)
360 1tbx_A ORF F-93, hypothetical 93.9 0.028 9.7E-07 41.4 2.5 63 38-109 11-77 (99)
361 3kp7_A Transcriptional regulat 93.9 0.16 5.6E-06 40.1 7.2 67 38-109 41-107 (151)
362 3bj6_A Transcriptional regulat 93.8 0.15 5E-06 40.4 6.8 67 37-109 42-108 (152)
363 3k0l_A Repressor protein; heli 93.8 0.04 1.4E-06 44.5 3.5 67 37-109 48-114 (162)
364 2lnb_A Z-DNA-binding protein 1 93.8 0.033 1.1E-06 38.6 2.4 55 37-102 21-75 (80)
365 3f3x_A Transcriptional regulat 93.8 0.084 2.9E-06 41.5 5.2 67 36-109 38-104 (144)
366 3e6m_A MARR family transcripti 93.7 0.089 3E-06 42.3 5.3 67 37-109 55-121 (161)
367 2nyx_A Probable transcriptiona 93.5 0.15 5.1E-06 41.4 6.5 68 36-109 46-113 (168)
368 2obp_A Putative DNA-binding pr 93.4 0.088 3E-06 38.7 4.3 55 48-109 34-88 (96)
369 2rdp_A Putative transcriptiona 93.4 0.085 2.9E-06 41.7 4.7 67 37-109 44-110 (150)
370 3hrs_A Metalloregulator SCAR; 93.4 0.08 2.7E-06 45.2 4.7 52 48-110 18-69 (214)
371 3deu_A Transcriptional regulat 93.3 0.034 1.2E-06 45.3 2.2 68 37-109 55-122 (166)
372 1xd7_A YWNA; structural genomi 93.3 0.074 2.5E-06 42.4 4.1 59 29-104 9-67 (145)
373 3eco_A MEPR; mutlidrug efflux 93.2 0.032 1.1E-06 43.6 1.9 68 37-109 33-101 (139)
374 2h09_A Transcriptional regulat 93.1 0.052 1.8E-06 43.6 3.0 50 49-109 53-102 (155)
375 2pg4_A Uncharacterized protein 93.1 0.034 1.2E-06 40.7 1.7 62 41-109 21-83 (95)
376 3nrv_A Putative transcriptiona 93.1 0.041 1.4E-06 43.5 2.3 68 36-109 41-108 (148)
377 3r0a_A Putative transcriptiona 93.1 0.033 1.1E-06 43.1 1.7 48 37-87 28-76 (123)
378 3bja_A Transcriptional regulat 93.1 0.044 1.5E-06 42.7 2.4 67 37-109 35-101 (139)
379 3bro_A Transcriptional regulat 93.0 0.041 1.4E-06 43.1 2.2 68 37-109 36-104 (141)
380 3hsr_A HTH-type transcriptiona 93.0 0.037 1.3E-06 43.5 1.9 67 37-109 38-104 (140)
381 2qww_A Transcriptional regulat 93.0 0.2 6.7E-06 39.7 6.3 67 37-109 43-111 (154)
382 3g3z_A NMB1585, transcriptiona 93.0 0.049 1.7E-06 42.9 2.6 68 36-109 32-99 (145)
383 2fbi_A Probable transcriptiona 93.0 0.034 1.2E-06 43.5 1.6 68 36-109 37-104 (142)
384 2lkp_A Transcriptional regulat 92.9 0.05 1.7E-06 41.6 2.5 48 35-87 32-79 (119)
385 2hr3_A Probable transcriptiona 92.9 0.066 2.2E-06 42.2 3.3 70 35-109 35-104 (147)
386 4aik_A Transcriptional regulat 92.9 0.094 3.2E-06 41.9 4.2 67 38-109 34-100 (151)
387 2qvo_A Uncharacterized protein 92.8 0.07 2.4E-06 39.0 3.1 52 50-109 30-81 (95)
388 3oop_A LIN2960 protein; protei 92.8 0.039 1.3E-06 43.4 1.8 68 36-109 38-105 (143)
389 2nnn_A Probable transcriptiona 92.7 0.049 1.7E-06 42.5 2.2 68 36-109 39-106 (140)
390 3jw4_A Transcriptional regulat 92.6 0.085 2.9E-06 41.7 3.5 67 38-109 44-111 (148)
391 2gxg_A 146AA long hypothetical 92.6 0.088 3E-06 41.3 3.6 66 37-109 39-104 (146)
392 3cdh_A Transcriptional regulat 92.5 0.077 2.6E-06 42.3 3.2 67 37-109 45-111 (155)
393 3bpv_A Transcriptional regulat 92.5 0.053 1.8E-06 42.2 2.2 67 37-109 31-97 (138)
394 2fbh_A Transcriptional regulat 92.4 0.11 3.6E-06 40.8 3.9 66 38-109 40-106 (146)
395 1jgs_A Multiple antibiotic res 92.3 0.069 2.4E-06 41.5 2.7 67 37-109 36-102 (138)
396 2a61_A Transcriptional regulat 92.3 0.058 2E-06 42.4 2.2 67 37-109 35-101 (145)
397 2bv6_A MGRA, HTH-type transcri 92.2 0.056 1.9E-06 42.4 2.0 68 36-109 38-105 (142)
398 1lj9_A Transcriptional regulat 92.1 0.059 2E-06 42.3 2.0 66 38-109 32-97 (144)
399 3u2r_A Regulatory protein MARR 92.1 0.15 5E-06 41.3 4.5 69 36-109 47-116 (168)
400 1g55_A DNA cytosine methyltran 92.1 0.37 1.3E-05 44.2 7.6 121 196-344 3-145 (343)
401 3tos_A CALS11; methyltransfera 92.1 0.22 7.4E-06 43.7 5.8 94 194-294 69-217 (257)
402 2fa5_A Transcriptional regulat 92.0 0.072 2.5E-06 42.8 2.5 67 37-109 51-117 (162)
403 2pex_A Transcriptional regulat 92.0 0.069 2.4E-06 42.5 2.4 68 37-110 49-116 (153)
404 1bja_A Transcription regulator 92.0 0.089 3.1E-06 38.5 2.7 61 37-110 18-79 (95)
405 1q1h_A TFE, transcription fact 92.0 0.05 1.7E-06 40.9 1.4 46 38-86 21-66 (110)
406 3tgn_A ADC operon repressor AD 92.0 0.098 3.4E-06 41.1 3.2 67 36-109 39-105 (146)
407 3s2w_A Transcriptional regulat 91.7 0.064 2.2E-06 43.1 1.8 66 38-109 53-118 (159)
408 2zkz_A Transcriptional repress 91.7 0.05 1.7E-06 40.2 1.1 59 36-104 28-86 (99)
409 1z91_A Organic hydroperoxide r 91.6 0.12 4.1E-06 40.6 3.4 69 36-110 41-109 (147)
410 2eth_A Transcriptional regulat 91.6 0.1 3.6E-06 41.5 3.0 68 36-109 45-112 (154)
411 3cjn_A Transcriptional regulat 91.6 0.072 2.5E-06 42.8 2.0 67 37-109 54-120 (162)
412 1sfx_A Conserved hypothetical 91.4 0.079 2.7E-06 39.2 1.9 47 37-87 22-68 (109)
413 2fxa_A Protease production reg 90.9 0.37 1.3E-05 40.7 5.9 67 37-109 50-116 (207)
414 2qlz_A Transcription factor PF 90.9 0.059 2E-06 46.6 0.8 51 30-85 7-57 (232)
415 2p4w_A Transcriptional regulat 90.8 0.17 5.8E-06 42.7 3.6 69 31-105 11-80 (202)
416 3u1d_A Uncharacterized protein 90.7 0.24 8E-06 39.6 4.1 101 16-140 19-125 (151)
417 3i71_A Ethanolamine utilizatio 90.6 0.33 1.1E-05 31.4 3.9 44 49-104 17-60 (68)
418 4g6q_A Putative uncharacterize 90.5 0.088 3E-06 43.7 1.6 73 31-108 19-92 (182)
419 2frh_A SARA, staphylococcal ac 90.2 0.17 5.8E-06 39.0 2.9 67 38-109 40-107 (127)
420 1v4r_A Transcriptional repress 90.2 0.35 1.2E-05 35.6 4.6 52 32-87 16-69 (102)
421 1sfu_A 34L protein; protein/Z- 89.8 0.31 1.1E-05 33.8 3.6 52 41-102 21-72 (75)
422 2fbk_A Transcriptional regulat 89.5 0.077 2.6E-06 43.7 0.4 68 37-109 71-140 (181)
423 2oo3_A Protein involved in cat 89.4 0.75 2.6E-05 40.7 6.7 130 162-300 58-204 (283)
424 1p6r_A Penicillinase repressor 89.2 0.13 4.4E-06 36.4 1.3 50 37-87 11-61 (82)
425 3nqo_A MARR-family transcripti 89.0 0.23 7.7E-06 41.2 3.0 71 35-110 41-112 (189)
426 1uly_A Hypothetical protein PH 89.0 0.27 9.2E-06 41.1 3.4 50 32-86 17-66 (192)
427 2pn6_A ST1022, 150AA long hypo 89.0 0.19 6.5E-06 39.9 2.4 46 37-86 5-50 (150)
428 2cfx_A HTH-type transcriptiona 88.9 0.22 7.5E-06 39.4 2.7 46 37-86 7-52 (144)
429 2w25_A Probable transcriptiona 88.9 0.21 7.3E-06 39.7 2.6 46 37-86 9-54 (150)
430 1j5y_A Transcriptional regulat 88.6 0.24 8.3E-06 41.1 2.9 58 35-104 21-79 (187)
431 3g7u_A Cytosine-specific methy 88.5 1.9 6.4E-05 40.0 9.1 118 196-342 3-145 (376)
432 1okr_A MECI, methicillin resis 88.4 0.099 3.4E-06 39.9 0.3 59 40-109 15-80 (123)
433 2k4b_A Transcriptional regulat 88.4 0.13 4.3E-06 38.1 0.8 50 37-87 37-87 (99)
434 4b8x_A SCO5413, possible MARR- 88.4 0.21 7.1E-06 39.6 2.2 56 49-109 50-105 (147)
435 2d1h_A ST1889, 109AA long hypo 88.3 0.29 1E-05 36.0 2.9 36 49-87 35-70 (109)
436 3qv2_A 5-cytosine DNA methyltr 88.2 0.58 2E-05 42.6 5.3 122 194-345 9-157 (327)
437 2p5v_A Transcriptional regulat 88.0 0.26 8.8E-06 39.8 2.6 46 37-86 12-57 (162)
438 3ggo_A Prephenate dehydrogenas 88.0 1.7 5.7E-05 39.2 8.3 83 196-283 34-120 (314)
439 2dbb_A Putative HTH-type trans 87.7 0.26 9E-06 39.2 2.4 46 37-86 11-56 (151)
440 2cg4_A Regulatory protein ASNC 87.6 0.26 8.8E-06 39.3 2.3 46 37-86 10-55 (152)
441 3k2z_A LEXA repressor; winged 87.6 0.26 8.7E-06 41.3 2.4 39 46-87 20-58 (196)
442 2c7p_A Modification methylase 87.2 2.2 7.6E-05 38.6 8.6 120 195-344 11-149 (327)
443 1i1g_A Transcriptional regulat 87.1 0.24 8.2E-06 38.8 1.8 46 38-87 7-52 (141)
444 3ps9_A TRNA 5-methylaminomethy 87.0 1 3.6E-05 45.1 6.9 95 194-291 66-216 (676)
445 2cyy_A Putative HTH-type trans 86.8 0.25 8.5E-06 39.4 1.8 46 37-86 9-54 (151)
446 2ia0_A Putative HTH-type trans 86.7 0.34 1.2E-05 39.6 2.6 46 37-86 19-64 (171)
447 2p8t_A Hypothetical protein PH 86.7 0.56 1.9E-05 39.3 3.9 49 49-109 29-77 (200)
448 3cta_A Riboflavin kinase; stru 86.7 0.69 2.3E-05 39.6 4.7 54 49-110 26-79 (230)
449 3i4p_A Transcriptional regulat 86.5 0.33 1.1E-05 39.2 2.4 47 36-86 4-50 (162)
450 1ku9_A Hypothetical protein MJ 86.3 1.3 4.3E-05 34.5 5.8 36 49-87 40-75 (152)
451 2b0l_A GTP-sensing transcripti 86.1 0.74 2.5E-05 34.1 4.0 43 41-87 34-77 (102)
452 1p4x_A Staphylococcal accessor 86.0 0.34 1.2E-05 42.3 2.4 68 37-109 160-228 (250)
453 2o03_A Probable zinc uptake re 85.9 0.42 1.4E-05 37.1 2.6 51 34-87 10-65 (131)
454 2e1c_A Putative HTH-type trans 85.8 0.34 1.2E-05 39.6 2.2 47 36-86 28-74 (171)
455 2xvc_A ESCRT-III, SSO0910; cel 85.6 0.3 1E-05 31.6 1.3 47 37-86 12-58 (59)
456 4fx0_A Probable transcriptiona 85.5 0.47 1.6E-05 37.6 2.8 55 49-109 51-105 (148)
457 2qq9_A Diphtheria toxin repres 85.5 0.74 2.5E-05 39.4 4.3 49 50-109 24-72 (226)
458 2fe3_A Peroxide operon regulat 85.4 0.74 2.5E-05 36.4 3.9 50 35-87 22-76 (145)
459 3pvc_A TRNA 5-methylaminomethy 85.3 0.67 2.3E-05 46.7 4.4 119 194-347 58-232 (689)
460 2py6_A Methyltransferase FKBM; 85.1 1.1 3.9E-05 41.9 5.7 56 193-248 225-293 (409)
461 3b1f_A Putative prephenate deh 85.0 3.3 0.00011 36.4 8.5 88 196-292 7-98 (290)
462 1fx7_A Iron-dependent represso 85.0 0.65 2.2E-05 39.8 3.7 48 51-109 25-72 (230)
463 1g60_A Adenine-specific methyl 84.9 0.75 2.6E-05 40.2 4.1 39 193-233 211-250 (260)
464 2vn2_A DNAD, chromosome replic 84.6 0.65 2.2E-05 35.9 3.2 35 50-87 51-85 (128)
465 2v79_A DNA replication protein 84.2 0.59 2E-05 36.6 2.7 36 49-87 50-85 (135)
466 2esh_A Conserved hypothetical 83.7 1.3 4.5E-05 33.5 4.5 70 33-109 11-90 (118)
467 2dk5_A DNA-directed RNA polyme 82.8 0.41 1.4E-05 34.7 1.2 46 39-87 24-70 (91)
468 4esf_A PADR-like transcription 82.1 1.3 4.4E-05 33.6 3.9 72 32-109 8-86 (117)
469 2g9w_A Conserved hypothetical 81.9 0.57 2E-05 36.6 1.9 48 37-87 11-62 (138)
470 2o0m_A Transcriptional regulat 81.9 0.28 9.5E-06 45.0 0.0 63 36-111 21-83 (345)
471 2pjp_A Selenocysteine-specific 81.7 1.1 3.6E-05 34.3 3.3 55 37-104 9-63 (121)
472 4h0n_A DNMT2; SAH binding, tra 81.6 1.8 6.3E-05 39.3 5.4 121 196-345 4-146 (333)
473 3tqn_A Transcriptional regulat 81.2 1.4 4.9E-05 33.0 3.8 49 32-87 18-67 (113)
474 1bia_A BIRA bifunctional prote 80.5 1 3.5E-05 40.8 3.3 56 38-104 8-63 (321)
475 2ek5_A Predicted transcription 80.2 2.4 8.2E-05 32.7 4.9 50 31-87 12-62 (129)
476 3f8b_A Transcriptional regulat 80.2 1.5 5.2E-05 33.1 3.7 74 30-109 7-89 (116)
477 3ew7_A LMO0794 protein; Q8Y8U8 79.9 6.6 0.00023 32.4 8.1 95 197-295 2-103 (221)
478 3fwz_A Inner membrane protein 79.9 7.5 0.00026 29.9 7.9 87 196-292 8-103 (140)
479 3elk_A Putative transcriptiona 79.2 0.87 3E-05 34.6 2.0 74 30-109 9-89 (117)
480 2xig_A Ferric uptake regulatio 79.2 1.2 4.3E-05 35.3 3.0 51 34-87 26-81 (150)
481 1mzb_A Ferric uptake regulatio 79.1 0.91 3.1E-05 35.4 2.2 49 36-87 19-73 (136)
482 1hsj_A Fusion protein consisti 79.1 0.83 2.8E-05 43.7 2.3 67 38-109 407-474 (487)
483 1lss_A TRK system potassium up 78.9 10 0.00034 28.6 8.3 87 195-292 4-100 (140)
484 3ius_A Uncharacterized conserv 78.8 7.4 0.00025 33.7 8.4 94 196-295 6-103 (286)
485 1zkd_A DUF185; NESG, RPR58, st 78.7 2.2 7.4E-05 39.6 4.9 36 193-228 79-121 (387)
486 1sd4_A Penicillinase repressor 78.2 0.61 2.1E-05 35.5 0.9 50 37-87 12-62 (126)
487 3maj_A DNA processing chain A; 77.8 1.3 4.5E-05 40.9 3.1 53 37-102 330-382 (382)
488 2qlz_A Transcription factor PF 77.6 3 0.0001 35.7 5.2 53 38-103 168-220 (232)
489 3iht_A S-adenosyl-L-methionine 77.5 6.4 0.00022 31.4 6.5 55 194-248 40-94 (174)
490 3r6d_A NAD-dependent epimerase 77.3 23 0.00078 29.2 10.8 135 197-347 7-154 (221)
491 3by6_A Predicted transcription 77.0 2.3 7.7E-05 32.6 3.8 50 31-87 19-69 (126)
492 3llv_A Exopolyphosphatase-rela 76.9 11 0.00039 28.7 8.1 77 196-279 7-93 (141)
493 3mwm_A ZUR, putative metal upt 76.8 1.3 4.4E-05 34.7 2.4 51 34-87 13-68 (139)
494 3rkx_A Biotin-[acetyl-COA-carb 76.7 1.4 4.7E-05 40.0 2.9 56 39-104 7-63 (323)
495 1pl8_A Human sorbitol dehydrog 76.0 8.3 0.00028 35.0 8.1 93 192-295 169-274 (356)
496 1p4x_A Staphylococcal accessor 76.0 1.3 4.4E-05 38.6 2.4 67 38-109 37-104 (250)
497 3l4b_C TRKA K+ channel protien 75.7 14 0.00046 30.8 8.9 86 197-292 2-97 (218)
498 2dph_A Formaldehyde dismutase; 75.7 12 0.0004 34.6 9.2 101 192-296 183-301 (398)
499 3neu_A LIN1836 protein; struct 75.6 3 0.0001 31.9 4.2 50 31-87 21-71 (125)
500 2aef_A Calcium-gated potassium 75.4 20 0.00068 30.1 9.9 86 194-292 8-103 (234)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=3.2e-56 Score=420.40 Aligned_cols=327 Identities=18% Similarity=0.306 Sum_probs=291.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623 14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE 93 (359)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 93 (359)
++...|.+++.||+.+++|++|++|||||.|.+.++|+|++|||+++|+ +++.++|||++|++.|+|.+..+
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~----- 78 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETR----- 78 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEecc-----
Confidence 5667799999999999999999999999999875589999999999999 68999999999999999986532
Q ss_pred CCCceEecCccch-hhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccC---CChhHhhhhChHHHHH
Q 043623 94 EENEAYALTSASK-LLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHG---INIWGYAEQNHEFNNL 169 (359)
Q Consensus 94 ~~~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g---~~~~~~~~~~~~~~~~ 169 (359)
++++.|++|+.++ +|..++|.++.+++.+.. ...+..|..|.++++ +++ +++...+| .++|+++.++++....
T Consensus 79 ~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr-~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 155 (353)
T 4a6d_A 79 GGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVR-EGR-NQYLETFGVPAEELFTAIYRSEGERLQ 155 (353)
T ss_dssp TTEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHH-HTS-CCHHHHHSCCCSSHHHHHTSSHHHHHH
T ss_pred CccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHh-cCC-ChhHHhcCCChHHHHHHHhhCHHHHHH
Confidence 1245899999887 778888889999888764 346789999999999 677 55666666 4689999999999999
Q ss_pred HHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC------CCCceEE
Q 043623 170 FNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE------TDNLKFI 242 (359)
Q Consensus 170 f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~------~~rv~~~ 242 (359)
|+++|....... +.++..++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++
T Consensus 156 f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~ 233 (353)
T 4a6d_A 156 FMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQ 233 (353)
T ss_dssp HHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeee
Confidence 999999887776 88899888 88889999999999999999999999999999999999877653 6899999
Q ss_pred eCCCCC-CCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhc
Q 043623 243 AGDMNQ-SIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCV 321 (359)
Q Consensus 243 ~~d~~~-~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (359)
.+|+++ +.|++|+|+++++||+|+|+++.++|++++++|+| ||+++|+|.+.++....+ .....+|+.|+..+
T Consensus 234 ~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~ 307 (353)
T 4a6d_A 234 EGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT 307 (353)
T ss_dssp ESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS
T ss_pred cCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC
Confidence 999998 67789999999999999999999999999999999 999999999988766544 34457899999889
Q ss_pred CCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 322 PGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 322 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
+|++||.+||+++|+++||+.++++++++..++|+|+|
T Consensus 308 ~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 308 EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 99999999999999999999999999999999999997
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=8.9e-53 Score=398.47 Aligned_cols=344 Identities=28% Similarity=0.465 Sum_probs=297.1
Q ss_pred hhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCC-CCCCHHHHHhhcCC--CCCCcchHHHHHHHHhccCceee
Q 043623 9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRG-RPVTLPELVSALEF--QPNKRNCLRRIMRLLDHSGFFST 85 (359)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~t~~~LA~~~~~--~~~~~~~l~~~L~~L~~~g~l~~ 85 (359)
..+..+++..+++++.|++.+++|++|++||||++|.++| +|+|++|||+++|+ +|.++..++||||+|++.|+|++
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~ 93 (364)
T 3p9c_A 14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTC 93 (364)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEE
Confidence 4567888999999999999999999999999999998754 69999999999997 64334499999999999999998
Q ss_pred ccccCCCCC-CCceEecCccchhhhcC-CCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhC
Q 043623 86 TKVHNSREE-ENEAYALTSASKLLLKD-KPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQN 163 (359)
Q Consensus 86 ~~~~~~~~~-~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~ 163 (359)
+.... +++ .++.|++|+.+++|..+ ++.++++++.+..++.++..|.+|.++++ +|+ ++|+..+|.++|+|+.++
T Consensus 94 ~~~~~-~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r-~g~-~~~~~~~g~~~~~~~~~~ 170 (364)
T 3p9c_A 94 LVEEG-KDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVL-DGG-IPFNKAYGMSAFEYHGTD 170 (364)
T ss_dssp EEEEC-SSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHH-HCS-CHHHHHHSSCHHHHHTTC
T ss_pred ecccc-CCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHh-hCC-ChHHHhcCCCHHHHHHhC
Confidence 72000 000 02689999999988765 46689998887666667889999999999 677 789888999999999999
Q ss_pred hHHHHHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEE
Q 043623 164 HEFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFI 242 (359)
Q Consensus 164 ~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~ 242 (359)
++....|+++|....... +.++..++ .+++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++
T Consensus 171 ~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 249 (364)
T 3p9c_A 171 PRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHV 249 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEE
Confidence 999999999999877665 77887776 2567799999999999999999999999999999999999999988999999
Q ss_pred eCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh-hc
Q 043623 243 AGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT-CV 321 (359)
Q Consensus 243 ~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 321 (359)
.+|+++++|..|+|++.++||+|+++++.++|++++++|+| ||+++|+|...++.............+++.|+. ..
T Consensus 250 ~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~ 326 (364)
T 3p9c_A 250 GGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNP 326 (364)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCS
T ss_pred eCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhccc
Confidence 99999977767999999999999999999999999999999 999999999988765443222233467888885 47
Q ss_pred CCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 322 PGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 322 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
+|+.|+.++|+++|+++||+.+++.++++..++||+||
T Consensus 327 ~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 327 GGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp SCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 89999999999999999999999999999999999997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=1.8e-51 Score=390.11 Aligned_cols=342 Identities=32% Similarity=0.532 Sum_probs=293.3
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccC---CCCCCHHHHHhhcC-CCCCCcchHHHHHHHHhccCceeec
Q 043623 11 ELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKR---GRPVTLPELVSALE-FQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~---~~~~t~~~LA~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+..+++..+++++.|++.+++|++|++||||+.|.++ ++|.|++|||+++| .+|.++..++||||+|++.|+|++.
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 5677889999999999999999999999999999863 24799999999998 4543345999999999999999986
Q ss_pred cccCCCCC-CCceEecCccchhhhcC-CCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhCh
Q 043623 87 KVHNSREE-ENEAYALTSASKLLLKD-KPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNH 164 (359)
Q Consensus 87 ~~~~~~~~-~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~ 164 (359)
.... +++ .++.|++|+.++.|..+ ++.++++++.+..++.++..|.+|.++++ +|. ++|+..+|.++|+|+.+++
T Consensus 97 ~~~~-~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r-~g~-~~~~~~~g~~~~~~~~~~~ 173 (368)
T 3reo_A 97 LREL-PSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAIL-EGG-IPFNKAYGMNIFDYHGTDH 173 (368)
T ss_dssp EEEC-TTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHH-HCS-CHHHHHSSSCHHHHHTTCH
T ss_pred cccC-CCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHh-cCC-CHHHHHhCCCHHHHHhhCH
Confidence 2000 000 02689999999977754 46789999887766667889999999999 676 7898889999999999999
Q ss_pred HHHHHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEe
Q 043623 165 EFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIA 243 (359)
Q Consensus 165 ~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~ 243 (359)
+....|+++|....... ..+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|++++.+++.++|+++.
T Consensus 174 ~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 252 (368)
T 3reo_A 174 RINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLG 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEe
Confidence 99999999999877665 77777775 25677899999999999999999999999999999999999998889999999
Q ss_pred CCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh-cC
Q 043623 244 GDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC-VP 322 (359)
Q Consensus 244 ~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 322 (359)
+|+++++|..|+|++.++||+|+++++.++|++++++|+| ||+|+|+|...++.............+++.|+.. .+
T Consensus 253 ~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (368)
T 3reo_A 253 GDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPG 329 (368)
T ss_dssp CCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSB
T ss_pred cCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCC
Confidence 9999977767999999999999999999999999999999 9999999999887654432222335678888765 58
Q ss_pred CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 323 GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 323 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
|+.|+.++|+++|+++||+.+++.+..+..++||+||
T Consensus 330 g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 330 GKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 9999999999999999999999999999999999986
No 4
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=4e-51 Score=385.89 Aligned_cols=349 Identities=45% Similarity=0.832 Sum_probs=297.1
Q ss_pred CcccccchhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccC
Q 043623 2 SSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSG 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g 81 (359)
|||+.+++++..+++.++++++.|++.+++|++++++|||+.|...++|.|++|||+++|++|.+++.++|||++|++.|
T Consensus 3 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~g 82 (352)
T 1fp2_A 3 SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNG 82 (352)
T ss_dssp -----CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTT
T ss_pred ccccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCC
Confidence 67888788899999999999999999999999999999999998643599999999999997656789999999999999
Q ss_pred ceeeccccCCCCCCCceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhh
Q 043623 82 FFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAE 161 (359)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~ 161 (359)
+|++... +++.|++|+.+++|.+++|.++++++.+..++.++..|.+|+++++++|. +++...+|.++|+|+.
T Consensus 83 ll~~~~~------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~ 155 (352)
T 1fp2_A 83 FFEIITK------EEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLD 155 (352)
T ss_dssp SEEEEES------SSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHH
T ss_pred eEEEecC------CCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHH
Confidence 9998720 04799999999999988888899999887655567889999999983344 7788888999999999
Q ss_pred hChHHHHHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCce
Q 043623 162 QNHEFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLK 240 (359)
Q Consensus 162 ~~~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~ 240 (359)
++++....|+++|....... +. ++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++|+
T Consensus 156 ~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~ 234 (352)
T 1fp2_A 156 KNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLT 234 (352)
T ss_dssp HCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEE
T ss_pred hChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcE
Confidence 99999999999999877665 55 77773237778999999999999999999999999999999999999998767799
Q ss_pred EEeCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh
Q 043623 241 FIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC 320 (359)
Q Consensus 241 ~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
++.+|+++++|+||+|++.++||+|+++++.++|++++++|+|+++||+++|.|...++....+........+++.|+.
T Consensus 235 ~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~- 313 (352)
T 1fp2_A 235 YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC- 313 (352)
T ss_dssp EEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-
T ss_pred EEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-
Confidence 9999998877789999999999999999999999999999997222699999999987654331111233467777776
Q ss_pred cCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 321 VPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 321 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
.+++.++.++|.++|+++||+++++++.++..++||+++
T Consensus 314 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 314 LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 568889999999999999999999999888889999985
No 5
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=1.2e-50 Score=381.93 Aligned_cols=326 Identities=26% Similarity=0.421 Sum_probs=289.5
Q ss_pred hhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623 9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV 88 (359)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 88 (359)
+-...++..++++++.|++.+++|++|+++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++ +
T Consensus 16 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~- 88 (348)
T 3lst_A 16 DMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S- 88 (348)
T ss_dssp CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E-
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c-
Confidence 33556788899999999999999999999999999985 79999999999999 68999999999999999999 4
Q ss_pred cCCCCCCCceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHH
Q 043623 89 HNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNN 168 (359)
Q Consensus 89 ~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (359)
++.|++|+.++.|.++++.++.+++.+..++..+..|.+|+++++ +|. +++...+|.++|+|+.++++...
T Consensus 89 -------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~-~~~~~~~g~~~~~~~~~~~~~~~ 159 (348)
T 3lst_A 89 -------DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALG-PER-PAFADIFGSSLDAYFDGDAEVEA 159 (348)
T ss_dssp -------TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTC-TTC-CCHHHHHSSCHHHHHTTCHHHHH
T ss_pred -------CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHh-cCC-ChhhHHhCCCHHHHHHhCHHHHH
Confidence 589999999998888877789998887655556789999999999 676 56888889899999999999999
Q ss_pred HHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCceEE
Q 043623 169 LFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-----TDNLKFI 242 (359)
Q Consensus 169 ~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-----~~rv~~~ 242 (359)
.|.++|....... +.+++.++ +++..+|||||||+|.++..+++++|+++++++|+++++...+. .+||+++
T Consensus 160 ~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~ 237 (348)
T 3lst_A 160 LYYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVV 237 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEE
T ss_pred HHHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEE
Confidence 9999999877666 78888887 78889999999999999999999999999999999887773321 5789999
Q ss_pred eCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC
Q 043623 243 AGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP 322 (359)
Q Consensus 243 ~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (359)
.+|+++++|+||+|++.++||+|+++++.++|++++++||| ||+++|.|...++..... ....+++.|+...+
T Consensus 238 ~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~----~~~~~d~~~~~~~~ 310 (348)
T 3lst_A 238 EGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDAH----QSKEMDFMMLAART 310 (348)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSCC----HHHHHHHHHHHTTS
T ss_pred ecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCcc----hhhhcChhhhhcCC
Confidence 99998866799999999999999999999999999999999 999999999887764332 23467888887789
Q ss_pred CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 323 GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 323 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
++.++.++|.++|+++||+++++++..+..++||+++
T Consensus 311 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 311 GQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 9999999999999999999999999878899999874
No 6
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=7.9e-50 Score=379.20 Aligned_cols=326 Identities=25% Similarity=0.450 Sum_probs=290.4
Q ss_pred hhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623 9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV 88 (359)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 88 (359)
+-...+...++++++.|++.+++|+++++||||+.|++ +|.|++|||+++|+ +++.++|||++|++.|+|.+++
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~- 105 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG- 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS-
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC-
Confidence 33445667889999999999999999999999999985 79999999999999 6899999999999999999976
Q ss_pred cCCCCCCCce-EecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHH
Q 043623 89 HNSREEENEA-YALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFN 167 (359)
Q Consensus 89 ~~~~~~~~~~-~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~ 167 (359)
++. |++|+.++.|.++++.++.+++.+..++..+..|.+|.++++ +++ ++|...+|.++|+|+.++++..
T Consensus 106 -------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~-~~~~~~~g~~~~~~~~~~~~~~ 176 (369)
T 3gwz_A 106 -------HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVR-TGE-ASFDVANGTSFWQLTHEDPKAR 176 (369)
T ss_dssp -------STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHH-HSS-CSHHHHHSSCHHHHHHHCHHHH
T ss_pred -------CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHh-CCC-ChhHhhcCCCHHHHHHhCHHHH
Confidence 578 999999998888887788998887765546788999999999 676 5677788889999999999999
Q ss_pred HHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCc
Q 043623 168 NLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNL 239 (359)
Q Consensus 168 ~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv 239 (359)
..|+++|....... +.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||
T Consensus 177 ~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v 254 (369)
T 3gwz_A 177 ELFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRC 254 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCce
Confidence 99999999877666 78888887 77889999999999999999999999999999999888887763 5789
Q ss_pred eEEeCCCCCCCC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh
Q 043623 240 KFIAGDMNQSIP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM 318 (359)
Q Consensus 240 ~~~~~d~~~~~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
+++.+|+++++| +||+|++.++||+|+++++.++|++++++|+| ||+++|.|...++.... . ...+++.|+
T Consensus 255 ~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~ 326 (369)
T 3gwz_A 255 EILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLL 326 (369)
T ss_dssp EEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHH
T ss_pred EEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHH
Confidence 999999998777 69999999999999999999999999999999 99999999998776432 1 456788888
Q ss_pred hhcCCcccCHHHHHHHHHhcCCceeeEEe-cCCcceEEEEEC
Q 043623 319 TCVPGIERSEKEWERLFFDAGFTSYKITP-LLGLRSFIEVYL 359 (359)
Q Consensus 319 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 359 (359)
...+++.++.++|.++|+++||+++++++ .++..++||+++
T Consensus 327 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 327 VLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred hhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 78899999999999999999999999999 578899999975
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=1.1e-49 Score=376.78 Aligned_cols=350 Identities=46% Similarity=0.817 Sum_probs=294.7
Q ss_pred hhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccc
Q 043623 9 ANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKV 88 (359)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 88 (359)
..+..+++.++++++.|++.+++|+++++||||+.|+..++|.|++|||+++|++|.+++.++|||++|++.|+|.+...
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~ 83 (358)
T 1zg3_A 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIV 83 (358)
T ss_dssp TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecc
Confidence 35677888899999999999999999999999999986435999999999999977668999999999999999998710
Q ss_pred cCCC-CCC-CceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCC-CChhhhccCCChhHhhhhChH
Q 043623 89 HNSR-EEE-NEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNEL-PDPFVTGHGINIWGYAEQNHE 165 (359)
Q Consensus 89 ~~~~-~~~-~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~~g~~~~~~~~~~~~ 165 (359)
.... ++. ++.|++|+.+++|++++|.++++++.+..++.++..|.+|+++++ ++. .++|+..+|.++|+|+.++|+
T Consensus 84 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~~~~~~~~g~~~~~~~~~~p~ 162 (358)
T 1zg3_A 84 KGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFN-EDKEQTLFECATGESFWDFLNKDSE 162 (358)
T ss_dssp CCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHH-CSCCCCHHHHHHSSCHHHHHTSGGG
T ss_pred cccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCCChHHHHhCCCHHHHHhcChh
Confidence 0000 000 268999999999998888889999988766566789999999999 673 267888889999999999999
Q ss_pred HHH--HHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEe
Q 043623 166 FNN--LFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIA 243 (359)
Q Consensus 166 ~~~--~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~ 243 (359)
... .|++.|.........+++.+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++..+|+++.
T Consensus 163 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 242 (358)
T 1zg3_A 163 SSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVG 242 (358)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEE
T ss_pred hhhHHHHHHHHhcccHHHHHHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEe
Confidence 999 999999875543235677773226677899999999999999999999999999999999999988767799999
Q ss_pred CCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCC
Q 043623 244 GDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG 323 (359)
Q Consensus 244 ~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (359)
+|+++++|.||+|+++++||+|+++++.++|++++++|+|+++||+++|.|...++....+........+++.|+...+|
T Consensus 243 ~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g 322 (358)
T 1zg3_A 243 GDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLG 322 (358)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCC
Confidence 99999877899999999999999999999999999999872126999999999877654321122345678877777789
Q ss_pred cccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 324 IERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 324 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
+.|+.++|.++|+++||+++++++.++..++||+++
T Consensus 323 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 323 KERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 999999999999999999999999988889999985
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=9e-49 Score=372.45 Aligned_cols=340 Identities=28% Similarity=0.482 Sum_probs=277.7
Q ss_pred hhHhHHHHHHHH--HHHHhHHHHHHHHHHHHcCcccccccCCCC---CCHHHHHhhcCC---CCCCcchHHHHHHHHhcc
Q 043623 9 ANELFQAQAHLY--KHVLSYMSSIFLKCAVELGIPDIIHKRGRP---VTLPELVSALEF---QPNKRNCLRRIMRLLDHS 80 (359)
Q Consensus 9 ~~~~~~~~~~l~--~~~~~~~~~~~l~~a~~lglf~~L~~~~~~---~t~~~LA~~~~~---~~~~~~~l~~~L~~L~~~ 80 (359)
.++..+++.+++ +++.|++.+++|++|++||||+.|++.|+| .|++|||+++|+ +|.+++.++|||++|++.
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~ 95 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC
Confidence 446677888888 999999999999999999999999863226 999999999999 665688999999999999
Q ss_pred Cceeec----cccCCCCCC--CceEecCccchhhhcCCC-CChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccC
Q 043623 81 GFFSTT----KVHNSREEE--NEAYALTSASKLLLKDKP-YCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHG 153 (359)
Q Consensus 81 g~l~~~----~~~~~~~~~--~~~~~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g 153 (359)
|+|.+. +. + ++.|++|+.+++|++++| .++++++.+..++.++..|.+|+++++ ++..++|+..+|
T Consensus 96 gll~~~~~~~~~------g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~g~~~~~~~~~g 168 (372)
T 1fp1_D 96 SVLTSTTRTIED------GGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVV-DEDIDLFKNVHG 168 (372)
T ss_dssp TSEEEEEEECTT------SCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHH-SCC---------
T ss_pred CceEecccccCC------CCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHH-cCCCChhHHHhC
Confidence 999987 20 1 258999999999998876 689999988766556788999999999 672367888888
Q ss_pred CChhHhhhhChHHHHHHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhc
Q 043623 154 INIWGYAEQNHEFNNLFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIAD 232 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~ 232 (359)
.++|+|+.++++....|++.|....... +.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~ 247 (372)
T 1fp1_D 169 VTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247 (372)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred CCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHh
Confidence 8999999999999999999998776655 77777774 256778999999999999999999999999999999999999
Q ss_pred CCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHH
Q 043623 233 LPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLL 312 (359)
Q Consensus 233 a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~ 312 (359)
+++.++|+++.+|+++++|.||+|++.++||+|+++++.++|++++++|+| ||+++|.|...++....+........
T Consensus 248 a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~ 324 (372)
T 1fp1_D 248 APPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVST 324 (372)
T ss_dssp CCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHH
T ss_pred hhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHH
Confidence 987788999999999877779999999999999999999999999999999 99999999998776543211113346
Q ss_pred hhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec-CCcceEEEEEC
Q 043623 313 YDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL-LGLRSFIEVYL 359 (359)
Q Consensus 313 ~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 359 (359)
+++.|+...+++.++.++|.++|+++||+++++++. ++..++||+++
T Consensus 325 ~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 325 LDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred hhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 777777666789999999999999999999999984 45259999986
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=3.3e-49 Score=369.87 Aligned_cols=316 Identities=20% Similarity=0.308 Sum_probs=276.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623 16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE 95 (359)
Q Consensus 16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 95 (359)
...+++++.|++.+++|++|+++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++.+++
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~-------- 72 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG-------- 72 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC--------
Confidence 3457899999999999999999999999985 79999999999999 6899999999999999999986
Q ss_pred CceEecCccchhhhcCCCCChhHHHHHhcCcccc-chhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHh
Q 043623 96 NEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFI-TPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGL 174 (359)
Q Consensus 96 ~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~ 174 (359)
++.|.+|+.++.|..+++.++.+++.+..+...+ ..|.+|+++++ +++ ++|...+|.++|+|+.++++....|.++|
T Consensus 73 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (332)
T 3i53_A 73 QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIR-TGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLM 150 (332)
T ss_dssp TSBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHH-HSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred CCeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHh-cCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence 5899999999988877777888888665332234 78999999999 676 56877888889999999999999999999
Q ss_pred hcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCC
Q 043623 175 ASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDM 246 (359)
Q Consensus 175 ~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~ 246 (359)
....... +.+++.++ +++..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .+||+++.+|+
T Consensus 151 ~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 228 (332)
T 3i53_A 151 SHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF 228 (332)
T ss_dssp HHHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCC
Confidence 8766544 56666666 66678999999999999999999999999999999888887763 47899999999
Q ss_pred CCCCC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcc
Q 043623 247 NQSIP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIE 325 (359)
Q Consensus 247 ~~~~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 325 (359)
++++| +||+|++.++||+|+++++.++|++++++|+| ||+++|.|...++. .. ...+++.|+...+++.
T Consensus 229 ~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~ 298 (332)
T 3i53_A 229 FDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKE 298 (332)
T ss_dssp TSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCC
Confidence 98777 69999999999999999999999999999999 99999999988776 22 1357777877789999
Q ss_pred cCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 326 RSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 326 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
++.++|.++|+++||+++++++.++ .++||+++
T Consensus 299 ~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 299 RSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999999999999999988 99999874
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4.8e-48 Score=362.19 Aligned_cols=318 Identities=25% Similarity=0.367 Sum_probs=281.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623 14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE 93 (359)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 93 (359)
.+..++++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|.+.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 567889999999999999999999999999975 79999999999999 6899999999999999999886
Q ss_pred CCCceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHH
Q 043623 94 EENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQG 173 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 173 (359)
++.|++|+.++.|. ++|.++++++.+..+... ..|.+|+++++ +++ ++++..+|.++|+|+.++++....|++.
T Consensus 76 --~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 149 (334)
T 2ip2_A 76 --RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALL-SGT-PGFELAFGEDFYSYLKRCPDAGRRFLLA 149 (334)
T ss_dssp --TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHH-HCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHH
T ss_pred --CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHh-cCC-ChhhhhcCCCHHHHHhhChHHHHHHHHH
Confidence 58999999999888 777789999988765434 88999999999 676 6788778889999999999999999999
Q ss_pred hhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCC
Q 043623 174 LASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGD 245 (359)
Q Consensus 174 ~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d 245 (359)
| ...... +.+++.++ +++ .+|||||||+|.++..+++++|+.+++++|++.+++.+++ .+||+++.+|
T Consensus 150 m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 225 (334)
T 2ip2_A 150 M-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGD 225 (334)
T ss_dssp H-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESC
T ss_pred H-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCC
Confidence 9 766655 77888877 666 9999999999999999999999999999999877777654 4789999999
Q ss_pred CCCCCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc
Q 043623 246 MNQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI 324 (359)
Q Consensus 246 ~~~~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
+++++|. ||+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++.... .....+++.|+...+++
T Consensus 226 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~ 298 (334)
T 2ip2_A 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGR 298 (334)
T ss_dssp TTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCc
Confidence 9987664 9999999999999999999999999999999 99999999988765432 23456777777767899
Q ss_pred ccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 325 ERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 325 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
.++.++|.++|+++||+++++++.++..++|+++|
T Consensus 299 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 299 HRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999999999999988899999975
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=8.6e-47 Score=357.53 Aligned_cols=335 Identities=15% Similarity=0.142 Sum_probs=268.5
Q ss_pred CCcccccchhHhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhcc
Q 043623 1 MSSIEVEDANELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHS 80 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~ 80 (359)
|++--..++.+..+++.++++++.|++.+++|+++++||||+.|+++++|.|++|||+++|+ +++.++|||++|++.
T Consensus 1 ~~~~~~~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~ 77 (363)
T 3dp7_A 1 MSLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTI 77 (363)
T ss_dssp ----CCCSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred CCcccccCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhC
Confidence 55544445667888999999999999999999999999999999864579999999999999 689999999999999
Q ss_pred CceeeccccCCCCCCCceEecCccchhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccC--CChhH
Q 043623 81 GFFSTTKVHNSREEENEAYALTSASKLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHG--INIWG 158 (359)
Q Consensus 81 g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g--~~~~~ 158 (359)
|+|+++ ++.|++|+.+++|+.+++. ..++.+. ....+..|.+|+++++ +|+ +++...+| .++|+
T Consensus 78 g~l~~~---------~~~y~~t~~s~~L~~~~~~--~~~~~~~-~~~~~~~~~~L~~~lr-~g~-~~~~~~~g~~~~~~~ 143 (363)
T 3dp7_A 78 GTILLE---------EDRYVLAKAGWFLLNDKMA--RVNMEFN-HDVNYQGLFHLEEALL-NGR-PEGLKVFGEWPTIYE 143 (363)
T ss_dssp TSEEEE---------TTEEEECHHHHHHHHCHHH--HHHHHHH-HHTTHHHHTTHHHHHH-HSS-CGGGGGTCCCSSHHH
T ss_pred CCeEec---------CCEEecccchHHhhCCCcc--cchheee-cHHhhhhHHHHHHHHh-cCC-CccccccCchHhHHH
Confidence 999886 4899999999999887642 2233333 3356789999999999 677 45666677 68999
Q ss_pred hhhhChHHHH----HHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC
Q 043623 159 YAEQNHEFNN----LFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP 234 (359)
Q Consensus 159 ~~~~~~~~~~----~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~ 234 (359)
++.++++... .|+..|..... ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.++
T Consensus 144 ~~~~~~~~~~~~~~~f~~~~~~~~~--~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 219 (363)
T 3dp7_A 144 GLSQLPEQVQKSWFGFDHFYSDQSF--GKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMR 219 (363)
T ss_dssp HGGGSCHHHHHHHHHHHHHTTCCCC--HHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHhhhhhH--HHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHH
Confidence 9999988766 36666654321 34555544 3567899999999999999999999999999999988887765
Q ss_pred C-------CCCceEEeCCCCCC---CC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC
Q 043623 235 E-------TDNLKFIAGDMNQS---IP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK 303 (359)
Q Consensus 235 ~-------~~rv~~~~~d~~~~---~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~ 303 (359)
+ .+||+++.+|++++ +| +||+|++.++||+|+++++.++|++++++|+| ||+|+|+|...++....
T Consensus 220 ~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~ 296 (363)
T 3dp7_A 220 KQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYE 296 (363)
T ss_dssp HHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSH
T ss_pred HHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCcccc
Confidence 3 36899999999983 66 59999999999999999999999999999999 99999999988775432
Q ss_pred chH-HHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623 304 PEI-TEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLL-GLRSFIEVYL 359 (359)
Q Consensus 304 ~~~-~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 359 (359)
... .......++.++...+++.|+.++|.++|+++||+++++++.. ...++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 297 TASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred chhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 110 0111122333444457889999999999999999999999875 4588998864
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=7.9e-46 Score=352.36 Aligned_cols=324 Identities=20% Similarity=0.282 Sum_probs=277.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCC
Q 043623 12 LFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNS 91 (359)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 91 (359)
..+...++++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.++|||++|++.|+|.+.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~---- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE---- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence 34556789999999999999999999999999964 79999999999999 6899999999999999999865
Q ss_pred CCCCCc--eEecCccchhhhcCCCCChhHHHHHhcCcccc-chhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHH
Q 043623 92 REEENE--AYALTSASKLLLKDKPYCLSPFVLLVTDAAFI-TPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNN 168 (359)
Q Consensus 92 ~~~~~~--~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (359)
++ .|++|+.+++|..+++.+++.++.+..++..+ ..|..|.+.++ ++. +++...+|.++|+++..+++...
T Consensus 84 ----~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~-~~~~~~~g~~~~~~~~~~~~~~~ 157 (374)
T 1qzz_A 84 ----KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVR-TGR-PAYAGRYGRPFWEDLSADVALAD 157 (374)
T ss_dssp ----C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHH-HSC-CSHHHHHSSCHHHHHHHCHHHHH
T ss_pred ----CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHh-cCC-ChhhhhhCCCHHHHHhhChHHHH
Confidence 46 89999999999988887888888766433345 78899999999 676 56777788899999999999999
Q ss_pred HHHHHhhcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCce
Q 043623 169 LFNQGLASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLK 240 (359)
Q Consensus 169 ~f~~~~~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~ 240 (359)
.|.+.|....... +.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++|+
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 235 (374)
T 1qzz_A 158 SFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 235 (374)
T ss_dssp HHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceE
Confidence 9999998776655 78888887 77789999999999999999999999999999999888877653 35899
Q ss_pred EEeCCCCCCCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee--ecCCCCCCchHHHHHHHhhhhh
Q 043623 241 FIAGDMNQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI--VVNEKKDKPEITEAKLLYDALM 317 (359)
Q Consensus 241 ~~~~d~~~~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~--~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
++.+|+++++|. ||+|++.+++|+|+++++.++|++++++|+| ||+++|.|. ..++.... .....+++.+
T Consensus 236 ~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~ 308 (374)
T 1qzz_A 236 VAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRM 308 (374)
T ss_dssp EEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHH
T ss_pred EEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHH
Confidence 999999886664 9999999999999999888999999999999 999999998 76544221 2334677777
Q ss_pred hhhcCCcccCHHHHHHHHHhcCCceeeEEecCCcc-----eEEEEEC
Q 043623 318 MTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLR-----SFIEVYL 359 (359)
Q Consensus 318 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~~i~~~~ 359 (359)
+...+++.++.++|.++|+++||+++++...++.. ++|+++|
T Consensus 309 ~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 309 LTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 76778999999999999999999999999988777 8999874
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.2e-44 Score=342.65 Aligned_cols=320 Identities=20% Similarity=0.322 Sum_probs=277.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623 16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE 95 (359)
Q Consensus 16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 95 (359)
..++++++.|++.+++|.+++++|||+.|.. +|.|++|||+++|+ ++..++|+|++|++.|+|.+.+
T Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~-------- 86 (360)
T 1tw3_A 20 ALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA-------- 86 (360)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE--------
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC--------
Confidence 4678999999999999999999999999964 79999999999999 6899999999999999999865
Q ss_pred CceEecCccchhhhcCCCCChhHHHHHhcCcc-ccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHh
Q 043623 96 NEAYALTSASKLLLKDKPYCLSPFVLLVTDAA-FITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGL 174 (359)
Q Consensus 96 ~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~ 174 (359)
++.|++|+.+++|..++|.+++.++.+...+. .+..|..|.+.++ +|. +++...+|.++|+++..+++....|.+.|
T Consensus 87 ~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~ 164 (360)
T 1tw3_A 87 PGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIR-TGR-PTYESIYGKPFYEDLAGRPDLRASFDSLL 164 (360)
T ss_dssp TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHH-HCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHH
T ss_pred CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHH-cCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHH
Confidence 58999999999999888888888876654332 4678899999999 676 45777778899999999999999999999
Q ss_pred hcCccch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCC
Q 043623 175 ASDSQMA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDM 246 (359)
Q Consensus 175 ~~~~~~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~ 246 (359)
....... +.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++|+++.+|+
T Consensus 165 ~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 242 (360)
T 1tw3_A 165 ACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 242 (360)
T ss_dssp TTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 8877666 88888887 77789999999999999999999999999999999777776653 35899999999
Q ss_pred CCCCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee-cCCCCCCchHHHHHHHhhhhhhhhcCCc
Q 043623 247 NQSIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV-VNEKKDKPEITEAKLLYDALMMTCVPGI 324 (359)
Q Consensus 247 ~~~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
++++|. ||+|++.+++|+|+++++.++|++++++|+| ||+++|.|.. .++.... .....+++.++...+++
T Consensus 243 ~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 315 (360)
T 1tw3_A 243 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGA 315 (360)
T ss_dssp TSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCc
Confidence 986664 9999999999999999889999999999999 9999999988 6544322 12345677777667899
Q ss_pred ccCHHHHHHHHHhcCCceeeEEecCCc-----ceEEEEEC
Q 043623 325 ERSEKEWERLFFDAGFTSYKITPLLGL-----RSFIEVYL 359 (359)
Q Consensus 325 ~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~~i~~~~ 359 (359)
.++.++|.++|+++||+++++.+.++. .++|+++|
T Consensus 316 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 316 LRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 999999999999999999999988665 78999875
No 14
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=8.2e-44 Score=335.81 Aligned_cols=314 Identities=16% Similarity=0.211 Sum_probs=262.8
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccC
Q 043623 11 ELFQAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHN 90 (359)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 90 (359)
++..+.. +++++.|++.+++|++++++|||++|. +|.|++|||+++|+ +++.++|||++|++.|+|++++
T Consensus 21 ~l~~p~~-l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~~--- 90 (352)
T 3mcz_A 21 ALTSVVD-LVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKEG--- 90 (352)
T ss_dssp CCCSHHH-HHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---
T ss_pred CCCCHHH-HHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEecC---
Confidence 4444444 999999999999999999999999996 49999999999999 6899999999999999999985
Q ss_pred CCCCCCceEecCccch-hhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHH
Q 043623 91 SREEENEAYALTSASK-LLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNL 169 (359)
Q Consensus 91 ~~~~~~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 169 (359)
+.|++|+.++ ++.+++|.+++.++.+.. ..+..|.+|+++++ +|.+.+|... .++..+++....
T Consensus 91 ------~~y~~t~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~-~g~~~~f~~~------~~~~~~~~~~~~ 155 (352)
T 3mcz_A 91 ------DAFRNTALTERYLTTTSADYIGPIVEHQY--LQWDNWPRLGEILR-SEKPLAFQQE------SRFAHDTRARDA 155 (352)
T ss_dssp ------TEEEECHHHHHHHSTTCTTCCHHHHHHHH--TTTTTGGGHHHHHT-CSSCCTTSHH------HHTTTCHHHHHH
T ss_pred ------CeeecCHHHHhhccCCChhhHHHHHHHhH--HHHHHHHHHHHHHh-CCCCCCcccc------cccccCHHHHHH
Confidence 7899999987 777788888888887652 36789999999999 7876544321 234578888899
Q ss_pred HHHHhhcCccchHHHHHhcccccCC-CCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceE
Q 043623 170 FNQGLASDSQMAKLIIKDCKHIFDG-LSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKF 241 (359)
Q Consensus 170 f~~~~~~~~~~~~~l~~~~~~~~~~-~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~ 241 (359)
|.++|.........+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .+||++
T Consensus 156 f~~~m~~~~~~~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 233 (352)
T 3mcz_A 156 FNDAMVRLSQPMVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEF 233 (352)
T ss_dssp HHHHHHHHHHHHHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEE
T ss_pred HHHHHHhhhhhHHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEE
Confidence 99999872221137888887 666 89999999999999999999999999999999888776653 468999
Q ss_pred EeCCCCC-C--CCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh
Q 043623 242 IAGDMNQ-S--IPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM 317 (359)
Q Consensus 242 ~~~d~~~-~--~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
+.+|+++ + .+. ||+|++.++||+|+++++.++|++++++|+| ||+++|.|...++....+ .....+++.|
T Consensus 234 ~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~ 307 (352)
T 3mcz_A 234 FEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHM 307 (352)
T ss_dssp EECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHH
T ss_pred EeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHH
Confidence 9999998 4 554 9999999999999999999999999999999 999999999988765443 2345678888
Q ss_pred hhhc-CCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 318 MTCV-PGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 318 ~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
+... +++.++.++|.++|+++||++++.. .+..++++++|
T Consensus 308 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 308 MVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 7654 7899999999999999999998853 35578888876
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-43 Score=332.17 Aligned_cols=312 Identities=20% Similarity=0.265 Sum_probs=269.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCC
Q 043623 17 AHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEEN 96 (359)
Q Consensus 17 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~ 96 (359)
.++++++.|++.+++|++++++|||+.|++ +|.|++|||+++|+ +++.++|||++|++.|+|+++ +
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~---------~ 73 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ---------A 73 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE---------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec---------C
Confidence 468899999999999999999999999986 79999999999999 689999999999999999875 4
Q ss_pred ceEecCccc-hhhhcCCCCChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhh
Q 043623 97 EAYALTSAS-KLLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLA 175 (359)
Q Consensus 97 ~~~~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~ 175 (359)
+.|++|+.+ .+|.++++.+++.++.+..++..+..|.+|+++++ ++.+ +++ . |+++.++++....|.+.|.
T Consensus 74 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~-~~~-----~-~~~~~~~~~~~~~~~~~~~ 145 (335)
T 2r3s_A 74 EGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVL-KGGT-AIS-----S-EGTLSPEHPVWVQFAKAMS 145 (335)
T ss_dssp TEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHH-HTSC-CST-----T-TGGGSTTCTHHHHHHHHSG
T ss_pred CEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHh-cCCC-CCC-----C-cccccCCHHHHHHHHHHHH
Confidence 899999999 68888888789999888755456789999999999 6663 332 2 7777888888899999988
Q ss_pred cCccch-HHHHHhccccc--CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCC
Q 043623 176 SDSQMA-KLIIKDCKHIF--DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGD 245 (359)
Q Consensus 176 ~~~~~~-~~l~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d 245 (359)
...... ..+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++|+++.+|
T Consensus 146 ~~~~~~~~~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 223 (335)
T 2r3s_A 146 PMMANPAQLIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGS 223 (335)
T ss_dssp GGGHHHHHHHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred HHHhhhHHHHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecc
Confidence 766655 67787777 5 7789999999999999999999999999999999877777654 3579999999
Q ss_pred CCC-CCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhc-C
Q 043623 246 MNQ-SIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCV-P 322 (359)
Q Consensus 246 ~~~-~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 322 (359)
+++ ++++ ||+|++.+++|+++++++.++|++++++|+| ||+++|+|...++....+ .....+++.|+... +
T Consensus 224 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~ 297 (335)
T 2r3s_A 224 AFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPN 297 (335)
T ss_dssp TTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSS
T ss_pred cccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCC
Confidence 998 6664 9999999999999999999999999999999 999999999887654332 23456777777665 7
Q ss_pred CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623 323 GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358 (359)
Q Consensus 323 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 358 (359)
++.++.++|.++|+++||+.+++.+.++..++|+++
T Consensus 298 ~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 298 GDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred CCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 899999999999999999999999998877877775
No 16
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=1.8e-43 Score=334.34 Aligned_cols=312 Identities=19% Similarity=0.298 Sum_probs=266.0
Q ss_pred hhHhHHHHHHHHHHHH-hHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 9 ANELFQAQAHLYKHVL-SYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 9 ~~~~~~~~~~l~~~~~-~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
..+..+++.++++++. |++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~ 98 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED 98 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEeeC
Confidence 3466778888999986 8999999999999999999985 79999999999999 6899999999999999999985
Q ss_pred ccCCCCCCCceEecCcc-chhhhcCCC---CChhHHHHHhcCccccchhhhHHHHHccCCCCChhhhccCCChhHhhhhC
Q 043623 88 VHNSREEENEAYALTSA-SKLLLKDKP---YCLSPFVLLVTDAAFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQN 163 (359)
Q Consensus 88 ~~~~~~~~~~~~~~t~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~ 163 (359)
+.|++|+. +.+|.+++| .++++++.+. ....+..|.+|+++++ ++.+ |+|+.++
T Consensus 99 ---------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~-~g~~-----------~~~~~~~ 156 (359)
T 1x19_A 99 ---------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVR-GQKN-----------FKGQVPY 156 (359)
T ss_dssp ---------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHT-TSCC-----------CCCSSCS
T ss_pred ---------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHh-cCCC-----------CcccccC
Confidence 69999995 568888877 7888888776 3346788999999999 6663 5556677
Q ss_pred hH---HHHHHHHHhhcCcc-ch-HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC---
Q 043623 164 HE---FNNLFNQGLASDSQ-MA-KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE--- 235 (359)
Q Consensus 164 ~~---~~~~f~~~~~~~~~-~~-~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~--- 235 (359)
++ ....|.+.|..... .. +.+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++
T Consensus 157 p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 234 (359)
T 1x19_A 157 PPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAA 234 (359)
T ss_dssp SCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHH
Confidence 77 88899999998877 55 78888887 77889999999999999999999999999999999888877653
Q ss_pred ----CCCceEEeCCCCC-CCCCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHH
Q 043623 236 ----TDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAK 310 (359)
Q Consensus 236 ----~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~ 310 (359)
.+||+++.+|+++ +++++|+|++.+++|+|+++++.++|++++++|+| ||+++|+|...++.. .+ ...
T Consensus 235 ~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~-~~---~~~ 307 (359)
T 1x19_A 235 EKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPE-NP---NFD 307 (359)
T ss_dssp HTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCTT-SC---CHH
T ss_pred hcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCCC-Cc---hHH
Confidence 4679999999998 67778999999999999999899999999999999 999999999887652 22 122
Q ss_pred HHhhhhhhhh-cCCcc----cCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 311 LLYDALMMTC-VPGIE----RSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 311 ~~~~~~~~~~-~~g~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
..+ .++.. .+++. ++.++|.++|+++||+++++.+.+ ..++|+++|
T Consensus 308 ~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 308 YLS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 223 33332 34666 899999999999999999999988 788999986
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.87 E-value=3.8e-21 Score=173.12 Aligned_cols=164 Identities=12% Similarity=0.105 Sum_probs=124.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCCccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPSADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~~D~i~~~~ 260 (359)
++++.+|||||||+|.++..++++. |+++++++|+ +.+++.|++ ..+|+++.+|+.+ ++++||+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4678999999999999999999975 6789999999 888887753 5689999999998 788899999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh---h-----------cCCccc
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT---C-----------VPGIER 326 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~g~~~ 326 (359)
+||++++++..++|++++++|+| ||++++.|............ ......++.... . .--...
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999998888999999999999 99999999887654321100 000111110000 0 001346
Q ss_pred CHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 327 SEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 327 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
+.+++.++|+++||+.++++....+...+.|+|
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 899999999999999999875433344455654
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.82 E-value=2.5e-19 Score=158.40 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=125.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD 264 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~ 264 (359)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH 121 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence 34668999999999999999999999999999999 777776553 4489999999998 554 5999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh--------------hhhcCCcccCHHH
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM--------------MTCVPGIERSEKE 330 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~g~~~t~~e 330 (359)
+++++..++|++++++|+| ||++++.+...++....... ....+...+ ........++.++
T Consensus 122 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (234)
T 3dtn_A 122 LEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENL--NKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQ 196 (234)
T ss_dssp SCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHH--HHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHH
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhH--HHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHH
Confidence 9998877899999999999 99999999887654221100 000000000 0001234568999
Q ss_pred HHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 331 WERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
|.++|+++||+.++++......+++..+|
T Consensus 197 ~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 197 QLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp HHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 99999999999999988877777666553
No 19
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.77 E-value=5.3e-18 Score=148.18 Aligned_cols=155 Identities=18% Similarity=0.294 Sum_probs=125.9
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~- 251 (359)
..++..+. ..++.+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 45566665 6778899999999999999999986 8889999999 778877654 3589999999988 554
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e 330 (359)
.||+|++..++|++++. ..+|+++++.|+| ||.+++.+........... ....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGPP----------------PEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSCC----------------GGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCCc----------------hhcccCHHH
Confidence 39999999999999875 5789999999999 9999999877655432210 112348999
Q ss_pred HHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 331 WERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
|.++++++||+++++...+.....+.++|
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999999998877777776664
No 20
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.76 E-value=4.4e-18 Score=148.77 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=122.2
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CCC-CccEE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SIP-SADAF 256 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~~-~~D~i 256 (359)
..+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|
T Consensus 35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence 34555554 456789999999999999999997 569999999 778877654 2589999999998 554 59999
Q ss_pred EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh----hhhhcCCcccCHHHHH
Q 043623 257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL----MMTCVPGIERSEKEWE 332 (359)
Q Consensus 257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~t~~e~~ 332 (359)
++.+++|++++++...+|++++++|+| ||.+++.++......... .......... .........++.++|.
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYD--KTVEAAKQRGFHQLANDLQTEYYTRIPVMQ 185 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHH--HHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHH--HHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence 999999999998877799999999999 999999987654421110 0000000000 0000112345899999
Q ss_pred HHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 333 RLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
++|+++||+++.+. ...+.+++.+.+
T Consensus 186 ~~l~~aGf~v~~~~-~~~~~w~~~~~~ 211 (220)
T 3hnr_A 186 TIFENNGFHVTFTR-LNHFVWVMEATK 211 (220)
T ss_dssp HHHHHTTEEEEEEE-CSSSEEEEEEEE
T ss_pred HHHHHCCCEEEEee-ccceEEEEeehh
Confidence 99999999876554 446677777653
No 21
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.75 E-value=6.6e-18 Score=151.95 Aligned_cols=163 Identities=17% Similarity=0.124 Sum_probs=118.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEEecc-hhccCC
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFLFKL-IFHDYD 266 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~~~~-vlh~~~ 266 (359)
.+++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|+++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 3567899999999999999999985 48999999 888887765 5689999999998 554 499999998 999986
Q ss_pred h-hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHH-----H---------------HHHHhhhhhhhh-cC--
Q 043623 267 D-EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT-----E---------------AKLLYDALMMTC-VP-- 322 (359)
Q Consensus 267 d-~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~---------------~~~~~~~~~~~~-~~-- 322 (359)
+ ++..++|++++++|+| ||+++|.+...++........ . ....+.+.+... .+
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 4 5567899999999999 898888655443322110000 0 000001111100 01
Q ss_pred ---------CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 323 ---------GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 323 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
.+.++.++|.++|+++||+++++........+++++|
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999987777677777764
No 22
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.75 E-value=1.6e-18 Score=150.97 Aligned_cols=163 Identities=14% Similarity=0.168 Sum_probs=118.3
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-- 251 (359)
.++..++ .++. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 35 ~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 35 NIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 4444444 3444 9999999999999999998 8889999999 778776654 4689999999998 655
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh---hh-hhhcCCcccC
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA---LM-MTCVPGIERS 327 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~g~~~t 327 (359)
.||+|++..++|++++. .++|+++++.|+| ||.+++.+...+...... ........ +. ........++
T Consensus 111 ~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 182 (219)
T 3dlc_A 111 YADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDS---ISAEMIRKNPDWKEFNRKNISQEN 182 (219)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHH---HHHHHHHHCTTHHHHHHHHSSHHH
T ss_pred cccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHH---HHHHHHHhHHHHHhhhhhccccCC
Confidence 49999999999999764 4789999999999 999999875543211000 00000000 00 0001234458
Q ss_pred HHHHHHHHHhcCCceeeEEecCCcceEEEE
Q 043623 328 EKEWERLFFDAGFTSYKITPLLGLRSFIEV 357 (359)
Q Consensus 328 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~ 357 (359)
.++|.++|+++||+++++.......+++..
T Consensus 183 ~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 183 VERFQNVLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHHHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHHHHHHHcCCCeEEEEecCCceEEEEe
Confidence 899999999999999999888766665544
No 23
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.75 E-value=1.2e-17 Score=150.13 Aligned_cols=155 Identities=17% Similarity=0.263 Sum_probs=121.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~ 253 (359)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 34455444 5677899999999999999999987 679999999 777776653 3789999999998 664 49
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|+|++..++||+++++...+|++++++|+| ||++++.++..+...... . .+.. .....+...++.++|.+
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---D---EFKE-YVKQRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---H---HHHH-HHHHHTCCCCCHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---H---HHHH-HHhcCCCCCCCHHHHHH
Confidence 999999999999877788999999999999 999999998776522111 0 0110 11112445679999999
Q ss_pred HHHhcCCceeeEEecC
Q 043623 334 LFFDAGFTSYKITPLL 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+|+++||+++++....
T Consensus 192 ~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEeCC
Confidence 9999999999887663
No 24
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.74 E-value=3e-17 Score=148.29 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=121.7
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~- 251 (359)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 45666665 6678899999999999999999987 679999999 777766553 4689999999988 665
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e 330 (359)
.||+|++..++|++++. .++|++++++|+| ||++++.+.......... .....+........+..++.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEGA----KKEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCHH----HHHHHHHHHHHHTCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCChh----HHHHHHHHHhhcCccCCCCHHH
Confidence 49999999999999876 5789999999999 999999998775533221 1111221112223566789999
Q ss_pred HHHHHHhcCCceeeEEecC
Q 043623 331 WERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
|.++++++||+++++...+
T Consensus 199 ~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHcCCeEEEEEECc
Confidence 9999999999999887763
No 25
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.74 E-value=2.6e-18 Score=150.77 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=116.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh 263 (359)
++..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 4578999999999999999999877 8999999 788877654 3789999999988 554 499999999987
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh---hcC------------------
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT---CVP------------------ 322 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------ 322 (359)
++..++..++|++++++|+| ||++++.++..+...... ...........+.. ...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 190 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence 77777778999999999999 999999877532211000 00000000111000 000
Q ss_pred CcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 323 GIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 323 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
...+. .+|.++|+++||+.+++..++....+|+.++
T Consensus 191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 11122 4899999999999999999987778888763
No 26
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.73 E-value=5.7e-17 Score=141.19 Aligned_cols=160 Identities=20% Similarity=0.196 Sum_probs=114.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCCCCC--CccEE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQSIP--SADAF 256 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~~~~--~~D~i 256 (359)
..++..+. ...+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|
T Consensus 35 ~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v 111 (218)
T 3ou2_A 35 PAALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV 111 (218)
T ss_dssp HHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred HHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence 34444443 1456679999999999999999998 569999999 778877765 3789999999988433 49999
Q ss_pred EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC-------CcccCHH
Q 043623 257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP-------GIERSEK 329 (359)
Q Consensus 257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~t~~ 329 (359)
++.+++|++++++...+|+++++.|+| ||.+++.+...+.......+ . ............. ....+.+
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQD-D-SEPEVAVRRTLQDGRSFRIVKVFRSPA 186 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHH
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhh-h-cccccceeeecCCcchhhHhhcCCCHH
Confidence 999999999998788999999999999 99999998876433211100 0 0000000000011 2245999
Q ss_pred HHHHHHHhcCCceeeEEecC
Q 043623 330 EWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 330 e~~~ll~~aGf~~~~~~~~~ 349 (359)
+|.++|+++||++......+
T Consensus 187 ~~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 187 ELTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHHCCCEEEeeeccc
Confidence 99999999999954444333
No 27
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.73 E-value=3.9e-17 Score=146.08 Aligned_cols=152 Identities=10% Similarity=0.052 Sum_probs=117.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~- 251 (359)
..++..+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 34555555 6678899999999999999999987 579999999 778777653 3689999999988 443
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
.||+|++..++|++++. .++|++++++||| ||++++.++......... . .... .........++.++|
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~ 170 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQA-CGVSSTSDFLTLPGL 170 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHT-TTCSCGGGSCCHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHH-HhcccccccCCHHHH
Confidence 49999999999999874 5789999999999 999999998765543321 1 1111 111112355799999
Q ss_pred HHHHHhcCCceeeEEec
Q 043623 332 ERLFFDAGFTSYKITPL 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.++|+++||+++++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999999887654
No 28
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.72 E-value=5.9e-17 Score=145.47 Aligned_cols=152 Identities=13% Similarity=0.287 Sum_probs=117.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-- 251 (359)
..+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 27 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 27 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 55666665 56788999999999999999999875 8999998 788877653 3679999999988 665
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhhh-hcCCcccCHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMMT-CVPGIERSEK 329 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~~t~~ 329 (359)
.||+|++..++|++++.. .+|++++++|+| ||++++.+...+.... ....... .... ......++.+
T Consensus 103 ~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKS 171 (260)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHH
T ss_pred CEEEEEEhhhhHhcCCHH--HHHHHHHHHcCC---CCEEEEEEcCCCCCHH------HHHHHHHHHHhcCccccCCCCHH
Confidence 499999999999999864 789999999999 9999999887654311 1111111 1111 1234567999
Q ss_pred HHHHHHHhcCCceeeEEec
Q 043623 330 EWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 330 e~~~ll~~aGf~~~~~~~~ 348 (359)
+|.++|+++||+++.+...
T Consensus 172 ~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 172 DWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEEe
Confidence 9999999999998877654
No 29
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.72 E-value=6.6e-17 Score=147.27 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=120.7
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~ 252 (359)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ .++++++.+|+.+ + ..
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~ 129 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EP 129 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC
Confidence 34555555 66778999999999999999997765 49999999 777776653 3689999999976 5 56
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC-----CchHHHHHHHhhh-hhhhhcCCccc
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD-----KPEITEAKLLYDA-LMMTCVPGIER 326 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~g~~~ 326 (359)
||+|++..++||+++++..++|++++++||| ||++++.+........ .+.........+. ......++..+
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 206 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCC
Confidence 9999999999999766677899999999999 9999999887654211 0000000011111 11122467778
Q ss_pred CHHHHHHHHHhcCCceeeEEecC
Q 043623 327 SEKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 327 t~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
+.++|.++++++||+++++...+
T Consensus 207 s~~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 207 SIPMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp CHHHHHHHHHTTTCEEEEEEECH
T ss_pred CHHHHHHHHHhCCcEEEEEEeCc
Confidence 99999999999999999987653
No 30
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.72 E-value=2.9e-17 Score=145.26 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=117.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEEe-cchhccCCh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFLF-KLIFHDYDD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~~-~~vlh~~~d 267 (359)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 5678999999999999999999876 8999999 788887765 5679999999988 554 4999995 559988854
Q ss_pred -hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH--------------------HHHHhhhhhhhhc-CC--
Q 043623 268 -EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE--------------------AKLLYDALMMTCV-PG-- 323 (359)
Q Consensus 268 -~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~g-- 323 (359)
++..++|++++++|+| ||++++.++..++......... ......+.+.... ++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 5678999999999999 8999887765544321100000 0000001111111 11
Q ss_pred ---------cccCHHHHHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 324 ---------IERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 324 ---------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
+.++.++|.++|+++||++..+....+...+++++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346999999999999998877766666677888875
No 31
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.72 E-value=7.3e-17 Score=147.70 Aligned_cols=153 Identities=18% Similarity=0.257 Sum_probs=118.5
Q ss_pred HHHHHhc----ccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-
Q 043623 182 KLIIKDC----KHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ- 248 (359)
Q Consensus 182 ~~l~~~~----~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~- 248 (359)
..++..+ . +.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+
T Consensus 68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 3455555 3 5678899999999999999999986 469999999 777776653 4789999999998
Q ss_pred CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623 249 SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER 326 (359)
Q Consensus 249 ~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
+++ .||+|++..++||+++. .++|++++++|+| ||++++.++...+..... .....+... ......
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~ 212 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMG 212 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCC
T ss_pred CCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCC
Confidence 665 49999999999999884 6889999999999 999999998876543321 111111111 112345
Q ss_pred CHHHHHHHHHhcCCceeeEEecC
Q 043623 327 SEKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 327 t~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
+.++|.++|+++||+++++..+.
T Consensus 213 ~~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 213 SLGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp CHHHHHHHHHHTTEEEEEEEECH
T ss_pred CHHHHHHHHHHCCCeEEEEEECc
Confidence 89999999999999999887653
No 32
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.71 E-value=2.4e-17 Score=151.78 Aligned_cols=165 Identities=12% Similarity=0.078 Sum_probs=119.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIIS-EAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~ 260 (359)
+.++.+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999996 6789999999999 778776653 4569999999988 544 599999999
Q ss_pred hhccCChhH-HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCch------HHHHH-HHhhhhhhhhcC---CcccCHH
Q 043623 261 IFHDYDDEV-CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPE------ITEAK-LLYDALMMTCVP---GIERSEK 329 (359)
Q Consensus 261 vlh~~~d~~-~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~---g~~~t~~ 329 (359)
++|++++.+ ..++|++++++|+| ||++++.+...+....... ..... ......+....+ ...++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 999996554 45689999999999 9999998866543321110 00000 000011111111 2447999
Q ss_pred HHHHHHHhcCCceeeEEecC-CcceEEEEEC
Q 043623 330 EWERLFFDAGFTSYKITPLL-GLRSFIEVYL 359 (359)
Q Consensus 330 e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 359 (359)
+|.++|+++||+++++.... +....+.++|
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999999998764 4455666665
No 33
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.71 E-value=1.3e-16 Score=144.56 Aligned_cols=140 Identities=19% Similarity=0.319 Sum_probs=110.7
Q ss_pred CCCeEEEEcCCc---hHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCCC------------C--C
Q 043623 194 GLSSLVEVGGGT---GSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQS------------I--P 251 (359)
Q Consensus 194 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~~------------~--~ 251 (359)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 888887764 57899999999761 2 3
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
.||+|++..+||++++++..++|++++++|+| ||+|++.+...+. .. ......+.+.........++.+++
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG---LP---AQQKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS---CH---HHHHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc---hH---HHHHHHHHHHhcCCCCccCCHHHH
Confidence 59999999999999987788999999999999 9999999987532 11 111122222222234567899999
Q ss_pred HHHHHhcCCceee
Q 043623 332 ERLFFDAGFTSYK 344 (359)
Q Consensus 332 ~~ll~~aGf~~~~ 344 (359)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998776
No 34
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.70 E-value=3.7e-17 Score=141.14 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=112.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEEEecchhccCChhH
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEV 269 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~ 269 (359)
+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++|++++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999997 558999999 788887765 6789999999988 544 499999999999998777
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecC
Q 043623 270 CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 270 ~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
..++|++++++|+| ||++++..+......... ........++.++|.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGPSLEPMY-------------HPVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCSSCEEEC-------------CSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCCchhhhh-------------chhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 78999999999999 999998876544311100 00112345689999999999999999998775
Q ss_pred C
Q 043623 350 G 350 (359)
Q Consensus 350 ~ 350 (359)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 4
No 35
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.70 E-value=8.4e-17 Score=142.75 Aligned_cols=152 Identities=18% Similarity=0.295 Sum_probs=117.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-- 251 (359)
..+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 45566555 67889999999999999999999875 8999999 778776653 3689999999987 655
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhhh-hcCCcccCHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMMT-CVPGIERSEK 329 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~g~~~t~~ 329 (359)
.||+|++..++|++++. .++|++++++|+| ||++++.+...+... .....+.. .... ......++.+
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSLS 155 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBHH
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCCh------hHHHHHHHHHHhccccccCCCCHH
Confidence 49999999999999875 4789999999999 999999988765431 11111111 1111 1234567999
Q ss_pred HHHHHHHhcCCceeeEEec
Q 043623 330 EWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 330 e~~~ll~~aGf~~~~~~~~ 348 (359)
+|.++|+++||+++++...
T Consensus 156 ~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEee
Confidence 9999999999998887654
No 36
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.70 E-value=5e-17 Score=147.19 Aligned_cols=152 Identities=15% Similarity=0.293 Sum_probs=115.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~v 261 (359)
+.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999999 777776653 3579999999988 554 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh--hhhhhcCCcccCHHHHHHHHHhcC
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA--LMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
+|++++.. .+|++++++|+| ||.+++.+.........+........+.. ......++..++..+|.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 99998865 789999999999 99999988654322111100011111111 112234566678899999999999
Q ss_pred CceeeEEec
Q 043623 340 FTSYKITPL 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999988754
No 37
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.70 E-value=2.3e-16 Score=145.67 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=117.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~- 251 (359)
..+++.+. .+.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 106 ~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 34455443 24567899999999999999999985 579999999 778877653 3689999999998 655
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e 330 (359)
.||+|++..++|+++ ..++|++++++|+| ||++++.+....+...... .......... ....++.++
T Consensus 184 ~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~s~~~ 251 (312)
T 3vc1_A 184 GAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQPS--KWVSQINAHF----ECNIHSRRE 251 (312)
T ss_dssp TCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSCC--HHHHHHHHHH----TCCCCBHHH
T ss_pred CCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccchh--HHHHHHHhhh----cCCCCCHHH
Confidence 499999999999994 56889999999999 9999999988776442210 1111111111 123668999
Q ss_pred HHHHHHhcCCceeeEEecC
Q 043623 331 WERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
|.++|+++||+++++..++
T Consensus 252 ~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 252 YLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHHHTTTEEEEEEEECH
T ss_pred HHHHHHHCCCEEEEEEeCC
Confidence 9999999999999987753
No 38
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.70 E-value=2.5e-16 Score=139.70 Aligned_cols=141 Identities=17% Similarity=0.269 Sum_probs=111.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCC--CccEEEecchhccC
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIP--SADAFLFKLIFHDY 265 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~--~~D~i~~~~vlh~~ 265 (359)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999998 557999999 7888877644 8999999876 444 49999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeE
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI 345 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 345 (359)
++++...+|++++++|+| ||++++..+.... ... ..... ........++.++|.++++++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~------~~~---~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTS------LYS---LINFY-IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTS------HHH---HHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcch------hHH---HHHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 988788999999999999 9999987664211 101 11111 1112345678999999999999999888
Q ss_pred EecC
Q 043623 346 TPLL 349 (359)
Q Consensus 346 ~~~~ 349 (359)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
No 39
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.70 E-value=7.6e-17 Score=143.97 Aligned_cols=148 Identities=19% Similarity=0.285 Sum_probs=116.2
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--Ccc
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SAD 254 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~D 254 (359)
.+++.++ ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||
T Consensus 84 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 4555554 4567899999999999999999886 457999998 778776654 3689999999987 554 499
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHH
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERL 334 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~l 334 (359)
+|++.+++|++++++..++|++++++|+| ||++++.+......... .+ .......++.++|.++
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~ 224 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VD----KEDSSLTRSDIHYKRL 224 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EE----TTTTEEEBCHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccce---------ec----ccCCcccCCHHHHHHH
Confidence 99999999999988888999999999999 99999988754332111 00 0112335699999999
Q ss_pred HHhcCCceeeEEecC
Q 043623 335 FFDAGFTSYKITPLL 349 (359)
Q Consensus 335 l~~aGf~~~~~~~~~ 349 (359)
|+++||+++++....
T Consensus 225 l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 225 FNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHTCCEEEEEECT
T ss_pred HHHCCCEEEEeeecC
Confidence 999999999987764
No 40
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.70 E-value=1.3e-16 Score=141.36 Aligned_cols=143 Identities=19% Similarity=0.203 Sum_probs=111.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--CccEEEecchhcc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHD 264 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~ 264 (359)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++||
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 356789999999999999999997 568999999 778777654 5789999999998 654 4999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK 344 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 344 (359)
+++. ..+|+++++.|+| ||.+++.+.......... .+............++.+++.++++++||++++
T Consensus 129 ~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKS---DGYACIAILGPTAKPREN-------SYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGGG-------GGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhhh-------hhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 9875 4789999999999 999998886543321110 111111111234557999999999999999999
Q ss_pred EEec
Q 043623 345 ITPL 348 (359)
Q Consensus 345 ~~~~ 348 (359)
+..+
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8755
No 41
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.69 E-value=5.9e-17 Score=143.22 Aligned_cols=132 Identities=15% Similarity=0.205 Sum_probs=108.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~ 264 (359)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 45999999999999999976 5678999999 778776653 3569999999998 332 4999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK 344 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 344 (359)
+++++..++|++++++|+| ||++++.+.........+ ...++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEE
Confidence 9977788999999999999 999998877654332221 0114899999999999999999
Q ss_pred EEecC
Q 043623 345 ITPLL 349 (359)
Q Consensus 345 ~~~~~ 349 (359)
+...+
T Consensus 204 ~~~~~ 208 (235)
T 3lcc_A 204 VEENP 208 (235)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 88764
No 42
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.69 E-value=1.4e-16 Score=146.31 Aligned_cols=163 Identities=14% Similarity=0.147 Sum_probs=122.5
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~ 253 (359)
..++..+. ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ .++++++.+|+.+....|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 44566665 67788999999999999999999977 79999999 778877653 458999999997652359
Q ss_pred cEEEecchhccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHH-----HHHHHhhh-hhhhh
Q 043623 254 DAFLFKLIFHDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEIT-----EAKLLYDA-LMMTC 320 (359)
Q Consensus 254 D~i~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~~~-~~~~~ 320 (359)
|+|++..++|++++ +....+|++++++|+| ||++++.+...++........ ......+. .....
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 99999999999954 5567899999999999 999999988765432100000 00000011 11123
Q ss_pred cCCcccCHHHHHHHHHhcCCceeeEEecCC
Q 043623 321 VPGIERSEKEWERLFFDAGFTSYKITPLLG 350 (359)
Q Consensus 321 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 350 (359)
.++..++.+++.++++++||+++++...+.
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 567888999999999999999999887643
No 43
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.69 E-value=1.8e-16 Score=141.77 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=112.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~ 260 (359)
+.++.+|||||||+|.++..+++.+|. +++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 566789999999999999999999986 9999999 777776553 4679999999987 654 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
++|+++ ..++|+++++.|+| ||++++.++......... . ....+.. .....++.++|.++|+++||
T Consensus 123 ~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf 188 (257)
T 3f4k_A 123 AIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---E---IEDFWMD--AYPEISVIPTCIDKMERAGY 188 (257)
T ss_dssp CSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCCBHHHHHHHHHHTTE
T ss_pred hHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence 999984 34789999999999 999999998755543321 1 1111111 11235689999999999999
Q ss_pred ceeeEEecC
Q 043623 341 TSYKITPLL 349 (359)
Q Consensus 341 ~~~~~~~~~ 349 (359)
+++++...+
T Consensus 189 ~~v~~~~~~ 197 (257)
T 3f4k_A 189 TPTAHFILP 197 (257)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 999988765
No 44
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.69 E-value=1.9e-16 Score=146.44 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=121.2
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~ 253 (359)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+....|
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 34555555 5677899999999999999999986 569999999 777776653 367999999987622469
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC----chHHH-HHHHhhhhh-hhhcCCcccC
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK----PEITE-AKLLYDALM-MTCVPGIERS 327 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~----~~~~~-~~~~~~~~~-~~~~~g~~~t 327 (359)
|+|++..++|++++++..++|++++++|+| ||++++.++..+..... .+... .....+... ....++..++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 999999999999877778999999999999 99999998876552110 00000 000111111 1124577789
Q ss_pred HHHHHHHHHhcCCceeeEEecC
Q 043623 328 EKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 328 ~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
.++|.++++++||+++++...+
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEECH
T ss_pred HHHHHHHHHhCCCEEEEEEecc
Confidence 9999999999999999887653
No 45
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.68 E-value=1.7e-16 Score=143.07 Aligned_cols=143 Identities=13% Similarity=0.113 Sum_probs=113.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~ 260 (359)
+.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 467789999999999999999998 8889999999 777776654 3789999999988 654 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
++|+++ ..++|++++++|+| ||++++.+.......... . ....+. ......++.+++.++++++||
T Consensus 123 ~~~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~--~~~~~~~~~~~~~~~l~~aGf 188 (267)
T 3kkz_A 123 AIYNIG---FERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWM--DAYPEIDTIPNQVAKIHKAGY 188 (267)
T ss_dssp CGGGTC---HHHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHH--HHCTTCEEHHHHHHHHHHTTE
T ss_pred CceecC---HHHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHH--HhCCCCCCHHHHHHHHHHCCC
Confidence 999993 35789999999999 999999998765543332 1 111111 112245689999999999999
Q ss_pred ceeeEEecC
Q 043623 341 TSYKITPLL 349 (359)
Q Consensus 341 ~~~~~~~~~ 349 (359)
+++++..++
T Consensus 189 ~~v~~~~~~ 197 (267)
T 3kkz_A 189 LPVATFILP 197 (267)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999998875
No 46
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.68 E-value=1.1e-16 Score=146.93 Aligned_cols=169 Identities=15% Similarity=0.209 Sum_probs=117.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C----CCceEEeCCCCC-CC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----T----DNLKFIAGDMNQ-SI 250 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~----~rv~~~~~d~~~-~~ 250 (359)
..+++.++ .+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+|+++.+|+.+ +.
T Consensus 73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 45555544 33459999999999999999997 568999999 788887764 1 789999999998 55
Q ss_pred C-CccEEEec-chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC---Cc--hHH-HHHHHhhhhh-----
Q 043623 251 P-SADAFLFK-LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD---KP--EIT-EAKLLYDALM----- 317 (359)
Q Consensus 251 ~-~~D~i~~~-~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~---~~--~~~-~~~~~~~~~~----- 317 (359)
+ .||+|++. .++|++++++..++|++++++|+| ||++++..+....... .. .+. .....+.+..
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 5 49988865 778888887788999999999999 8998887665432100 00 000 0000000000
Q ss_pred -----hh-h-------------cCCcccCHHHHHHHHHhcCCceeeEEecCC------cceEEEEE
Q 043623 318 -----MT-C-------------VPGIERSEKEWERLFFDAGFTSYKITPLLG------LRSFIEVY 358 (359)
Q Consensus 318 -----~~-~-------------~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~~i~~~ 358 (359)
.. . ...+.++.++|.++|+++||+++++.+++. ...++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 00 0 011246999999999999999999988752 23567665
No 47
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.68 E-value=8.5e-17 Score=134.84 Aligned_cols=147 Identities=19% Similarity=0.252 Sum_probs=116.2
Q ss_pred HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCCCccEEEecc
Q 043623 184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIPSADAFLFKL 260 (359)
Q Consensus 184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~~~D~i~~~~ 260 (359)
+++.++ ..++.+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+| .. +...||+|++..
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEES
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEcc
Confidence 344444 56778999999999999999999874 8999999 778877765 6789999999 32 333599999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
++|++++. ..+|+++++.|+| ||++++.++........++ ....++.++|.++|+ ||
T Consensus 84 ~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 84 SFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIGPP----------------LSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp CSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSSC----------------GGGCCCHHHHHHHTT--TE
T ss_pred chhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccCch----------------HhhhcCHHHHHHHHh--Cc
Confidence 99999865 4789999999999 9999999887655433220 012258999999999 99
Q ss_pred ceeeEEecCCcceEEEEE
Q 043623 341 TSYKITPLLGLRSFIEVY 358 (359)
Q Consensus 341 ~~~~~~~~~~~~~~i~~~ 358 (359)
+++++...+.....+.++
T Consensus 141 ~~~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEEEECSSTTEEEEEEE
T ss_pred EEEEccCCCCceEEEEEe
Confidence 999999997666655554
No 48
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.68 E-value=3e-16 Score=148.96 Aligned_cols=145 Identities=16% Similarity=0.269 Sum_probs=114.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCC--------------CCceEEeCCCCC-------
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPET--------------DNLKFIAGDMNQ------- 248 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~~--------------~rv~~~~~d~~~------- 248 (359)
..++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. ++++++.+|+.+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 3467899999999999999999986 7889999999 7787776541 699999999987
Q ss_pred CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623 249 SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER 326 (359)
Q Consensus 249 ~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
+++ .||+|++..++|++++. .++|++++++||| ||++++.+.......... ............+..+
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 229 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSEA------AQQDPILYGECLGGAL 229 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCHH------HHHCHHHHHTTCTTCC
T ss_pred CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCHh------HhhhHHHhhcccccCC
Confidence 444 49999999999999875 4789999999999 999999988765432221 1112222223345667
Q ss_pred CHHHHHHHHHhcCCceeeEEe
Q 043623 327 SEKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 327 t~~e~~~ll~~aGf~~~~~~~ 347 (359)
+.++|.++|+++||+.+++..
T Consensus 230 ~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 230 YLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp BHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 899999999999999887654
No 49
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.68 E-value=3.7e-16 Score=140.50 Aligned_cols=151 Identities=11% Similarity=0.190 Sum_probs=114.5
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFL 257 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~ 257 (359)
..+++.++ ..++.+|||||||+|.++..+++ |+.+++++|+ +.+++.++...+++++.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 44555554 56789999999999999999998 6789999999 8899988876699999999988 665 499999
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHh
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFD 337 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~ 337 (359)
+.+++|++++. .++|++++++|| ||++++.+...+...... .. ..+. ......+...++.+++. +|++
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~~---~~-~~~~-~~~~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIRLAQRIW---LY-DYFP-FLWEDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGGGCCCCG---GG-GTCH-HHHHHHHTSCCHHHHHH-HHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCchhHHHH---HH-HHHH-HHhhhhhhhCCCHHHHH-HHHH
Confidence 99999999775 478999999998 489999888654332211 00 0000 00111223445778899 9999
Q ss_pred cCCceeeEEec
Q 043623 338 AGFTSYKITPL 348 (359)
Q Consensus 338 aGf~~~~~~~~ 348 (359)
+||+.+++...
T Consensus 168 aGF~~v~~~~~ 178 (261)
T 3ege_A 168 NTKRRVEAIPF 178 (261)
T ss_dssp HHCSEEEEEEC
T ss_pred cCCCceeEEEe
Confidence 99999888765
No 50
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.67 E-value=1.4e-16 Score=138.41 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=109.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC-CccEEEecchhccCChh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP-SADAFLFKLIFHDYDDE 268 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~~~d~ 268 (359)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.++.+|+.+ +.+ .||+|++..++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999987 569999999 7888877654478889999887 533 49999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC-CceeeEEe
Q 043623 269 VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG-FTSYKITP 347 (359)
Q Consensus 269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG-f~~~~~~~ 347 (359)
+...+|+++++.|+| ||++++............ . ......++.++|.++|+++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRDK--------L------ARYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEECT--------T------SCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCcccccc--------c------chhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 888999999999999 899888754332211100 0 00123469999999999999 99999876
Q ss_pred c
Q 043623 348 L 348 (359)
Q Consensus 348 ~ 348 (359)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 5
No 51
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.67 E-value=1.2e-16 Score=141.91 Aligned_cols=138 Identities=13% Similarity=0.260 Sum_probs=111.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh 263 (359)
++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999999876 568999999 778877654 2368899999877 444 499999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 343 (359)
++++++..++|++++++|+| ||++++.+...... . .++ ...+...++.++|.++|+++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~---~-------~~~----~~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEG---V-------ILD----DVDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSS---E-------EEE----TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCc---c-------eec----ccCCcccCCHHHHHHHHHHcCCeEE
Confidence 99998888999999999999 99999999876541 0 010 0112334589999999999999999
Q ss_pred eEEecC
Q 043623 344 KITPLL 349 (359)
Q Consensus 344 ~~~~~~ 349 (359)
++....
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 998764
No 52
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.67 E-value=1.2e-15 Score=144.35 Aligned_cols=215 Identities=11% Similarity=0.059 Sum_probs=139.9
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch-hhhcCCCCChh
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK-LLLKDKPYCLS 117 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~-~l~~~~~~~~~ 117 (359)
++|..| . +|.|++|||+.+|+ +++.+++||++|.+.|+++.. ++ |++++.+. ++....+.+..
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~~~~~~~~~ 110 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVAEYGIGKRY 110 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHHHHTCCCCC
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHHhcCccccc
Confidence 778888 4 68999999999999 689999999999999999875 35 99999766 55442221211
Q ss_pred HHHHHhcC--c----cccchhhhHHHHHccCCCCChhhhccCCChhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccc
Q 043623 118 PFVLLVTD--A----AFITPGHYLSRWLRGNELPDPFVTGHGINIWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHI 191 (359)
Q Consensus 118 ~~~~~~~~--~----~~~~~~~~L~~~l~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~ 191 (359)
+.+..... . .+...|..+.+.++ .. +.+.. .++.. + ..++ .... .++......
T Consensus 111 ~~~~~~~~g~g~~~~~~~~~~~~l~~~~~-~~-~~~~~-~~~~~----~-~~~~--~~~~-----------~~l~~~~~~ 169 (373)
T 2qm3_A 111 DFTCPHCQGKTVDLQAFADLLEQFREIVK-DR-PEPLH-EFDQA----Y-VTPE--TTVA-----------RVILMHTRG 169 (373)
T ss_dssp C------------CGGGHHHHHHHHHHHT-TC-CCCCG-GGTCC----C-BCHH--HHHH-----------HHHHHHHTT
T ss_pred cccchhhcCCCcchhhhHHHHHHHHHHHh-cC-Cccch-hcCCe----e-cCHH--HHHH-----------HHHHHhhcC
Confidence 11100000 0 01113445556565 22 11110 11100 0 0111 1111 111101101
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-----CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-----SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-----~~D~i~~~ 259 (359)
..++.+||||| |+|.++..+++..|+.+++++|+ +.+++.+++ ..+|+++.+|+.+++| .||+|++.
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 23468999999 99999999999988889999999 888887764 2389999999988332 49999998
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
..++... ...+++++.++|+| ||++++++...
T Consensus 249 ~p~~~~~---~~~~l~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 249 PPETLEA---IRAFVGRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp CCSSHHH---HHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred CCCchHH---HHHHHHHHHHHccc---CCeEEEEEEec
Confidence 7765442 46889999999999 99877776653
No 53
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.66 E-value=5.2e-16 Score=136.59 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=109.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCC-CCC--CccEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQ-SIP--SADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~-~~~--~~D~i 256 (359)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 346789999999999999999998 669999999 777765543 2368999999988 554 49999
Q ss_pred EecchhccCChhH-HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhc--------------
Q 043623 257 LFKLIFHDYDDEV-CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCV-------------- 321 (359)
Q Consensus 257 ~~~~vlh~~~d~~-~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 321 (359)
++..++|++++.+ ..++|++++++|+| ||++++.++........ + ..............
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcc
Confidence 9999999997643 56899999999999 99999998865432211 1 11111111111000
Q ss_pred -CCcccCHHHHHHHHHhcCCceeeEEe
Q 043623 322 -PGIERSEKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 322 -~g~~~t~~e~~~ll~~aGf~~~~~~~ 347 (359)
....++.++|.++|+++||+++++..
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence 11357999999999999999998864
No 54
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.66 E-value=4.6e-16 Score=141.69 Aligned_cols=151 Identities=13% Similarity=0.178 Sum_probs=111.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecchh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~vl 262 (359)
..++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 567799999999999999999999985 89999999 777776553 3489999999998 555 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec-----C---CCCCCchHHHHHHHhhhhh--hhhcCCcccCHHHHH
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV-----N---EKKDKPEITEAKLLYDALM--MTCVPGIERSEKEWE 332 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~-----~---~~~~~~~~~~~~~~~~~~~--~~~~~g~~~t~~e~~ 332 (359)
|++++.. ++|+++++.|+| ||++++.++.. . +....+............. ....+....+..++.
T Consensus 100 ~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCHH--HHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 9998864 789999999999 99999988761 1 1111000000001111111 112345556778999
Q ss_pred HHHHhcCCceeeEEe
Q 043623 333 RLFFDAGFTSYKITP 347 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~ 347 (359)
++|+++||+.+++..
T Consensus 175 ~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 175 IYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHcCCCeEEEEE
Confidence 999999999987743
No 55
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.66 E-value=3e-16 Score=135.82 Aligned_cols=134 Identities=8% Similarity=0.056 Sum_probs=105.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCceEEeCCCCC-CCC
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------------------TDNLKFIAGDMNQ-SIP 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------------------~~rv~~~~~d~~~-~~~ 251 (359)
+.++.+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..+|+++.+|+++ +.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 457789999999999999999997 569999999 788877653 2589999999998 543
Q ss_pred ---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCH
Q 043623 252 ---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSE 328 (359)
Q Consensus 252 ---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
.||+|++..++|++++++..+++++++++||| ||+++++....+..... ......+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 59999999999999988778899999999999 99855554333211000 00112489
Q ss_pred HHHHHHHHhcCCceeeEEec
Q 043623 329 KEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 329 ~e~~~ll~~aGf~~~~~~~~ 348 (359)
+++.+++++ ||++..+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998877655
No 56
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.66 E-value=3.6e-16 Score=139.70 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=110.3
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--CccE
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SADA 255 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D~ 255 (359)
.+.+.++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+
T Consensus 35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3444444 346789999999999999999998665 8999999 778777654 5789999999987 654 4999
Q ss_pred EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC------------CCCCCchHHHHHHHhhhh-----hh
Q 043623 256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN------------EKKDKPEITEAKLLYDAL-----MM 318 (359)
Q Consensus 256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~------------~~~~~~~~~~~~~~~~~~-----~~ 318 (359)
|++..++|++++. .++|++++++|+| ||++++...... ........ ....+++.. ..
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 185 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHW-PVDRYFNESMRTSHFL 185 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEE-EECCTTCCCEEEEEET
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEE-EeccccccceEEEeec
Confidence 9999999999764 5889999999999 899988643211 00000000 000000000 00
Q ss_pred -hhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 319 -TCVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 319 -~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
.......++.++|.++|+++||+++++...
T Consensus 186 ~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 186 GEDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp TEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 001112349999999999999999998754
No 57
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.65 E-value=1.1e-15 Score=138.74 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=113.9
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFL 257 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~ 257 (359)
..+++.+. ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|+
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 122 (279)
T 3ccf_A 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF 122 (279)
T ss_dssp CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence 45666655 56778999999999999999998 7789999999 788877764 4789999999988 555 499999
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhh-hh------hcCCcccCHHH
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALM-MT------CVPGIERSEKE 330 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~g~~~t~~e 330 (359)
+.+++|++++.. ++|++++++|+| ||++++..+..... .. .......... .. ......++.++
T Consensus 123 ~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 3ccf_A 123 SNAMLHWVKEPE--AAIASIHQALKS---GGRFVAEFGGKGNI---KY--ILEALYNALETLGIHNPQALNPWYFPSIGE 192 (279)
T ss_dssp EESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECTTTT---HH--HHHHHHHHHHHHTCCCGGGGCCCCCCCHHH
T ss_pred EcchhhhCcCHH--HHHHHHHHhcCC---CcEEEEEecCCcch---HH--HHHHHHHHHHhcCCccccCcCceeCCCHHH
Confidence 999999998754 789999999999 89988876543221 10 1111111100 00 01123568999
Q ss_pred HHHHHHhcCCceeeEEec
Q 043623 331 WERLFFDAGFTSYKITPL 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
|.++|+++||+++++...
T Consensus 193 ~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 193 YVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEe
Confidence 999999999999887644
No 58
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.65 E-value=8.6e-16 Score=136.28 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCCCCC--CccEEEecchhccCCh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQSIP--SADAFLFKLIFHDYDD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~~~d 267 (359)
.++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567999999999999999999876 7999999 778877664 2289999999987423 4999999999999987
Q ss_pred hHHHHHHHHHH-HhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh---------hhhhcCCcccCHHHHHHHHHh
Q 043623 268 EVCLKLLKNCR-EAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL---------MMTCVPGIERSEKEWERLFFD 337 (359)
Q Consensus 268 ~~~~~iL~~~~-~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~g~~~t~~e~~~ll~~ 337 (359)
. .++|++++ ++|+| ||++++.++..... ........... .........++.++|.++|++
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 6 47899999 99999 99999987643221 00000000000 001123456799999999999
Q ss_pred cCCceeeEEec
Q 043623 338 AGFTSYKITPL 348 (359)
Q Consensus 338 aGf~~~~~~~~ 348 (359)
+||+++++...
T Consensus 189 ~Gf~~~~~~~~ 199 (250)
T 2p7i_A 189 AGLQVTYRSGI 199 (250)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEeee
Confidence 99999988654
No 59
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.65 E-value=8e-16 Score=134.36 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=104.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCceEEeCCCCC-CCC--CccEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T----DNLKFIAGDMNQ-SIP--SADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~----~rv~~~~~d~~~-~~~--~~D~i 256 (359)
..++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 34578999999999999999999999899999999 778877654 1 289999999976 432 59999
Q ss_pred EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH----
Q 043623 257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE---- 332 (359)
Q Consensus 257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~---- 332 (359)
++..++|++++++..++|+++++.|+| ||.+++... ............ ..+........++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~ 176 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTPN-KEYNFHYGNLFE------GNLRHRDHRFEWTRKEFQTWAV 176 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB-GGGGGCCCCT-----------GGGCCTTSBCHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEccc-hhhhhhhcccCc------ccccccCceeeecHHHHHHHHH
Confidence 999999999988888999999999999 885544433 221111000000 000011223346888888
Q ss_pred HHHHhcCCceeeE
Q 043623 333 RLFFDAGFTSYKI 345 (359)
Q Consensus 333 ~ll~~aGf~~~~~ 345 (359)
++++++||++...
T Consensus 177 ~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 177 KVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHTEEEEEE
T ss_pred HHHHHCCcEEEEE
Confidence 8899999976443
No 60
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.65 E-value=2.3e-15 Score=133.27 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=109.9
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC--Ccc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP--SAD 254 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~--~~D 254 (359)
..+...++ ..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||
T Consensus 33 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 33 PALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 34455454 45678999999999999999998733 38999999 777776653 3579999999987 554 499
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC---CCCCchHH-------HHHHHh------hhhhh
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE---KKDKPEIT-------EAKLLY------DALMM 318 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~---~~~~~~~~-------~~~~~~------~~~~~ 318 (359)
+|++..++|++++. .++|++++++|+| ||++++....... ........ ....++ ..+..
T Consensus 110 ~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (243)
T 3bkw_A 110 LAYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA 184 (243)
T ss_dssp EEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH
T ss_pred EEEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc
Confidence 99999999999864 5789999999999 9999887643210 00000000 000000 00000
Q ss_pred hhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 319 TCVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 319 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
.......++.++|.++|+++||+++++...
T Consensus 185 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 185 KGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred CceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 011223368999999999999999998764
No 61
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.64 E-value=7e-16 Score=138.05 Aligned_cols=151 Identities=10% Similarity=0.108 Sum_probs=111.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC-CccEEE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP-SADAFL 257 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~-~~D~i~ 257 (359)
..++..+. ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|+
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 34555554 56778999999999999999999999999999999 788887765 5789999999988 522 499999
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh--hhhh-----hcCCcccCHHH
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA--LMMT-----CVPGIERSEKE 330 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~g~~~t~~e 330 (359)
+..++|++++. .++|+++++.|+| ||++++..+..... +........... +... ......++.++
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T 2p35_A 101 ANAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSD 172 (259)
T ss_dssp EESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHH
T ss_pred EeCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHH
Confidence 99999999774 4789999999999 99999887643211 100000011110 0000 01235579999
Q ss_pred HHHHHHhcCCce
Q 043623 331 WERLFFDAGFTS 342 (359)
Q Consensus 331 ~~~ll~~aGf~~ 342 (359)
|.++|+++||++
T Consensus 173 ~~~~l~~aGf~v 184 (259)
T 2p35_A 173 YFNALSPKSSRV 184 (259)
T ss_dssp HHHHHGGGEEEE
T ss_pred HHHHHHhcCCce
Confidence 999999999974
No 62
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.63 E-value=1.9e-15 Score=136.63 Aligned_cols=159 Identities=12% Similarity=0.158 Sum_probs=114.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hH------HHhcCCC-------CCCceEEeCC-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PH------VIADLPE-------TDNLKFIAGD- 245 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~i~~a~~-------~~rv~~~~~d- 245 (359)
..++..+. ..++.+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ .++|+++.+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34566555 6778899999999999999999995 8789999999 43 6665543 2689999998
Q ss_pred CCC---CCC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHH-HHHHhhhhhhh
Q 043623 246 MNQ---SIP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITE-AKLLYDALMMT 319 (359)
Q Consensus 246 ~~~---~~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~ 319 (359)
+.. +++ .||+|++..++|++++.. .+++.++..++| ||++++.+...+...... ... ........+..
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 184 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYA 184 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhh
Confidence 433 333 499999999999999875 478888888888 999999998876543221 100 00011101100
Q ss_pred -h---cC--CcccCHHHHHHHHHhcCCceeeEEec
Q 043623 320 -C---VP--GIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 320 -~---~~--g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
. .. ...++.++|.++++++||+++++..+
T Consensus 185 ~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 185 IAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 0 11 24679999999999999999888766
No 63
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.63 E-value=5.6e-16 Score=135.21 Aligned_cols=140 Identities=9% Similarity=0.089 Sum_probs=103.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCC-CCC--CccEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQ-SIP--SADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~-~~~--~~D~i 256 (359)
..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 35678999999999999999999988889999999 777776653 1289999999876 433 59999
Q ss_pred EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh-hh---hhhhhcCCcccCHHHHH
Q 043623 257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY-DA---LMMTCVPGIERSEKEWE 332 (359)
Q Consensus 257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~g~~~t~~e~~ 332 (359)
++..++|++++++..++|+++++.|+| ||.+++...... ...+ .+ .+........++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPNIEY-----------NVKFANLPAGKLRHKDHRFEWTRSQFQ 172 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBHHH-----------HHHTC-----------CCSCBCHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccCccc-----------chhhcccccccccccccccccCHHHHH
Confidence 999999999988888999999999999 886655443110 0000 00 00001123446889988
Q ss_pred ----HHHHhcCCceeeE
Q 043623 333 ----RLFFDAGFTSYKI 345 (359)
Q Consensus 333 ----~ll~~aGf~~~~~ 345 (359)
++++++||++...
T Consensus 173 ~~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 173 NWANKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHHHHSSEEEEEC
T ss_pred HHHHHHHHHcCceEEEE
Confidence 8999999987443
No 64
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.63 E-value=8.6e-15 Score=124.76 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=108.8
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAF 256 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i 256 (359)
..++..+ ++++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|
T Consensus 37 ~~~l~~~---~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i 111 (195)
T 3cgg_A 37 ARLIDAM---APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLI 111 (195)
T ss_dssp HHHHHHH---SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEE
T ss_pred HHHHHHh---ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEE
Confidence 3455544 356789999999999999999987 568999999 778777665 5679999999988 554 49999
Q ss_pred Eec-chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHH
Q 043623 257 LFK-LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLF 335 (359)
Q Consensus 257 ~~~-~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll 335 (359)
++. .++|+++++...++|+++++.|+| ||.+++..... ..++.++|.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~G~l~~~~~~~--------------------------~~~~~~~~~~~l 162 (195)
T 3cgg_A 112 VSAGNVMGFLAEDGREPALANIHRALGA---DGRAVIGFGAG--------------------------RGWVFGDFLEVA 162 (195)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEETT--------------------------SSCCHHHHHHHH
T ss_pred EECCcHHhhcChHHHHHHHHHHHHHhCC---CCEEEEEeCCC--------------------------CCcCHHHHHHHH
Confidence 998 899999888788999999999999 89888764321 114789999999
Q ss_pred HhcCCceeeEEec
Q 043623 336 FDAGFTSYKITPL 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
+++||++.++...
T Consensus 163 ~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 163 ERVGLELENAFES 175 (195)
T ss_dssp HHHTEEEEEEESS
T ss_pred HHcCCEEeeeecc
Confidence 9999999887654
No 65
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.63 E-value=2.4e-15 Score=128.96 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=112.1
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC-C
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP-S 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~-~ 252 (359)
..+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .
T Consensus 22 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (199)
T 2xvm_A 22 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ 97 (199)
T ss_dssp HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence 45555555 456689999999999999999987 569999999 778777653 2479999999987 544 4
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~ 332 (359)
||+|++..++|++++++..++|++++++|+| ||.+++++.........+ ......++.+++.
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~ 159 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELR 159 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHH
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHH
Confidence 9999999999999977788999999999999 999998887655432211 0112345889999
Q ss_pred HHHHhcCCceeeEEec
Q 043623 333 RLFFDAGFTSYKITPL 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
++|++ |++++....
T Consensus 160 ~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 160 RYYEG--WERVKYNED 173 (199)
T ss_dssp HHTTT--SEEEEEECC
T ss_pred HHhcC--CeEEEeccc
Confidence 99987 998887543
No 66
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=144.74 Aligned_cols=146 Identities=13% Similarity=0.230 Sum_probs=104.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----------------------------
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T---------------------------- 236 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~---------------------------- 236 (359)
.++.+|||||||+|.++..+++.+|..+++++|+ +.+++.|++ .
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 4578999999999999999999999999999999 777765542 0
Q ss_pred -----------------------------CCceEEeCCCCC-C-------CCCccEEEecchhccC----ChhHHHHHHH
Q 043623 237 -----------------------------DNLKFIAGDMNQ-S-------IPSADAFLFKLIFHDY----DDEVCLKLLK 275 (359)
Q Consensus 237 -----------------------------~rv~~~~~d~~~-~-------~~~~D~i~~~~vlh~~----~d~~~~~iL~ 275 (359)
.+|+|+.+|+.. + .+.||+|++..+++++ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 589999999986 3 1249999999999654 6777889999
Q ss_pred HHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHh--cCCceeeEEec
Q 043623 276 NCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFD--AGFTSYKITPL 348 (359)
Q Consensus 276 ~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~--aGf~~~~~~~~ 348 (359)
+++++|+| ||++++....+......... ....+. ........++++.++|.+ +||+.+++...
T Consensus 205 ~~~~~Lkp---GG~lil~~~~~~~y~~~~~~--~~~~~~-----~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRP---GGILVLEPQPWSSYGKRKTL--TETIYK-----NYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEE---EEEEEEECCCHHHHHTTTTS--CHHHHH-----HHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCC---CcEEEEecCCchhhhhhhcc--cHHHHh-----hhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999 88887753321100000000 000010 011122357899999999 99998888765
No 67
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.62 E-value=1.3e-15 Score=135.07 Aligned_cols=161 Identities=11% Similarity=0.054 Sum_probs=110.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecc-hhcc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKL-IFHD 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~-vlh~ 264 (359)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999987 468999999 788877664 2389999999987 554 599999998 9999
Q ss_pred CC-hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC---CCchH----HH-----------HHHHhhhhhhhhcC---
Q 043623 265 YD-DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK---DKPEI----TE-----------AKLLYDALMMTCVP--- 322 (359)
Q Consensus 265 ~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~---~~~~~----~~-----------~~~~~~~~~~~~~~--- 322 (359)
++ +++..++|++++++|+| ||.+++.-....... ..... .. ......+.+....+
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY 191 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcc
Confidence 84 36678999999999999 888877332210000 00000 00 00000000000011
Q ss_pred --------CcccCHHHHHHHHHhcCCceeeEEec--------CCcceEEEEEC
Q 043623 323 --------GIERSEKEWERLFFDAGFTSYKITPL--------LGLRSFIEVYL 359 (359)
Q Consensus 323 --------g~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~~i~~~~ 359 (359)
.+.++.++|.++|+++||+++++... .....+++++|
T Consensus 192 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 192 KRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred cccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 24569999999999999999998754 12344666664
No 68
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.62 E-value=6.3e-16 Score=140.69 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=108.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C-CC--CccEEEecch
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S-IP--SADAFLFKLI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~-~~--~~D~i~~~~v 261 (359)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|++.++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999997 679999999 778877664 2789999999988 3 33 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh--------hcCCcccCHHHHHH
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT--------CVPGIERSEKEWER 333 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~t~~e~~~ 333 (359)
+|++++. .++|++++++|+| ||.+++..+......... .....+...... ......++.++|.+
T Consensus 146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL 217 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence 9999876 4789999999999 999998876532210000 000000000000 01235578999999
Q ss_pred HHHhcCCceeeEEecC
Q 043623 334 LFFDAGFTSYKITPLL 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+|+++||+++++..+.
T Consensus 218 ~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 218 WLEEAGWQIMGKTGVR 233 (285)
T ss_dssp HHHHTTCEEEEEEEES
T ss_pred HHHHCCCceeeeeeEE
Confidence 9999999999888764
No 69
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.61 E-value=3.8e-15 Score=131.87 Aligned_cols=95 Identities=14% Similarity=0.300 Sum_probs=80.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecc-hh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKL-IF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~-vl 262 (359)
+++..+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 345689999999999999999887 69999999 788877654 4679999999987 554 499999986 99
Q ss_pred ccC-ChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 263 HDY-DDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 263 h~~-~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
|++ +.++..++|++++++|+| ||++++
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~ 135 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTD---GGKLLF 135 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence 888 556677899999999999 888876
No 70
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.61 E-value=9.2e-16 Score=134.18 Aligned_cols=153 Identities=12% Similarity=0.129 Sum_probs=110.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC----CC--CC-c
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ----SI--PS-A 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~----~~--~~-~ 253 (359)
..++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.++.+|+.+ +. .. |
T Consensus 42 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 42 QAILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCE
T ss_pred HHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCc
Confidence 34555554 455699999999999999999987 568999999 7888888776888888888764 11 23 9
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh------cCCcccC
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC------VPGIERS 327 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~t 327 (359)
|+|++..++| ..+. .++|+++++.|+| ||++++.++......... + ............ .....++
T Consensus 118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3e8s_A 118 DLICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-Y--QDGWREESFAGFAGDWQPMPWYFRT 188 (227)
T ss_dssp EEEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-C--SCEEEEECCTTSSSCCCCEEEEECC
T ss_pred cEEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-c--ccccchhhhhccccCcccceEEEec
Confidence 9999999999 5554 4789999999999 999999887654432211 0 000000000000 1123469
Q ss_pred HHHHHHHHHhcCCceeeEEe
Q 043623 328 EKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 328 ~~e~~~ll~~aGf~~~~~~~ 347 (359)
.++|.++|+++||+++++..
T Consensus 189 ~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 189 LASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEec
Confidence 99999999999999999875
No 71
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.60 E-value=2.6e-15 Score=133.35 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=109.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC-------CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP-------SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~-------~~D~i~~~ 259 (359)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999987 8999999 778877654 4589999999998 322 28999999
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHH----HHhhhhhhhhcCCcccCHHHHHHHH
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAK----LLYDALMMTCVPGIERSEKEWERLF 335 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~t~~e~~~ll 335 (359)
.++|++++++..++|++++++|+| ||+++|.+...++........... ......+........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999987788999999999999 999999998654321000000000 0000000001111236899999999
Q ss_pred HhcCCceeeEEec
Q 043623 336 FDAGFTSYKITPL 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
+||++++...+
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99999886443
No 72
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.59 E-value=7.9e-15 Score=131.40 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=104.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vl 262 (359)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 567789999999999999999987 568999999 777766543 4789999999987 654 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh-hhc---CCcccCHHHHHHHHHhc
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM-TCV---PGIERSEKEWERLFFDA 338 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~g~~~t~~e~~~ll~~a 338 (359)
|++++. .++|++++++|+| ||.+++. ...++ .............+... ... ....++.++|.++|+++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence 999874 4789999999999 8998887 22221 11100000111111100 000 12346789999999999
Q ss_pred CCceeeEE
Q 043623 339 GFTSYKIT 346 (359)
Q Consensus 339 Gf~~~~~~ 346 (359)
||+++.+.
T Consensus 187 Gf~~~~~~ 194 (263)
T 2yqz_A 187 GLKPRTRE 194 (263)
T ss_dssp TCCCEEEE
T ss_pred CCCcceEE
Confidence 99977653
No 73
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.58 E-value=7.9e-15 Score=131.37 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDE 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~ 268 (359)
....+|||||||+|.++..+++.+ .+++++|+ +.+++.+++..+|+++.+|+.+ +++ .||+|++..++|+++.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 456799999999999999999875 47999999 8899999988999999999998 776 39999999999887643
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 269 VCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
+++++++++||| ||.|+++....+.
T Consensus 116 ---~~~~e~~rvLkp---gG~l~~~~~~~~~ 140 (257)
T 4hg2_A 116 ---RFWAELRRVARP---GAVFAAVTYGLTR 140 (257)
T ss_dssp ---HHHHHHHHHEEE---EEEEEEEEECCCB
T ss_pred ---HHHHHHHHHcCC---CCEEEEEECCCCC
Confidence 679999999999 9999988765443
No 74
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.57 E-value=1.3e-14 Score=126.79 Aligned_cols=136 Identities=18% Similarity=0.133 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChhH
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDEV 269 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~~ 269 (359)
++.+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +++ .||+|++.+++|++++.
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 118 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 118 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence 3789999999999999988764 89998 7788777654 79999999887 554 49999999999999875
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh--hcCCcccCHHHHHHHHHhcCCceeeEEe
Q 043623 270 CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT--CVPGIERSEKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 270 ~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 347 (359)
.++|++++++|+| ||.+++.++..... . ........... ......++.++|.++|+++||+++++..
T Consensus 119 -~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 187 (219)
T 1vlm_A 119 -ERALKEAYRILKK---GGYLIVGIVDRESF-----L--GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187 (219)
T ss_dssp -HHHHHHHHHHEEE---EEEEEEEEECSSSH-----H--HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -HHHHHHHHHHcCC---CcEEEEEEeCCccH-----H--HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence 4789999999999 89999887643211 1 11111110000 1124557999999999999999998875
Q ss_pred c
Q 043623 348 L 348 (359)
Q Consensus 348 ~ 348 (359)
.
T Consensus 188 ~ 188 (219)
T 1vlm_A 188 T 188 (219)
T ss_dssp E
T ss_pred c
Confidence 4
No 75
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=124.27 Aligned_cols=131 Identities=14% Similarity=0.172 Sum_probs=101.8
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEec
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFK 259 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~ 259 (359)
.++..+.. ..+..+|||||||+|.++..++ .+++++|+.+. +++++.+|+.+ +++ .||+|++.
T Consensus 57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 45554431 3466899999999999998873 58999998433 68899999988 554 49999999
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
.++|+ .+ ...+|++++++|+| ||++++.+.... ..+.++|.++|+++|
T Consensus 123 ~~l~~-~~--~~~~l~~~~~~L~~---gG~l~i~~~~~~--------------------------~~~~~~~~~~l~~~G 170 (215)
T 2zfu_A 123 LSLMG-TN--IRDFLEEANRVLKP---GGLLKVAEVSSR--------------------------FEDVRTFLRAVTKLG 170 (215)
T ss_dssp SCCCS-SC--HHHHHHHHHHHEEE---EEEEEEEECGGG--------------------------CSCHHHHHHHHHHTT
T ss_pred hhccc-cC--HHHHHHHHHHhCCC---CeEEEEEEcCCC--------------------------CCCHHHHHHHHHHCC
Confidence 99984 44 45889999999999 999999875321 117899999999999
Q ss_pred CceeeEEecCCcceEEEEEC
Q 043623 340 FTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 340 f~~~~~~~~~~~~~~i~~~~ 359 (359)
|+++++....+...+++++|
T Consensus 171 f~~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 171 FKIVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEEEECCSTTCEEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEEe
Confidence 99988766666666676654
No 76
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.56 E-value=3.4e-14 Score=124.34 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=109.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC---CCC--CccE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ---SIP--SADA 255 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~---~~~--~~D~ 255 (359)
..+++.++ .++.+|||||||+|.++..+++. + .+++++|+ +.+++.+++. ..+++.+|+.+ +++ .||+
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDC 96 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEE
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCE
Confidence 45555443 46789999999999999999998 4 79999999 7787776642 24788899875 333 4999
Q ss_pred EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh------hhcCCcccCHH
Q 043623 256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM------TCVPGIERSEK 329 (359)
Q Consensus 256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~t~~ 329 (359)
|++.+++|++++. .++|+++++.|+| ||.+++..+..... . .........+.. .......++.+
T Consensus 97 v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (230)
T 3cc8_A 97 VIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPNVSHI---S--VLAPLLAGNWTYTEYGLLDKTHIRFFTFN 166 (230)
T ss_dssp EEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEECTTSH---H--HHHHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred EEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCCcchH---H--HHHHHhcCCceeccCCCCCcceEEEecHH
Confidence 9999999999876 4789999999999 89999877543211 0 000000000000 00122457999
Q ss_pred HHHHHHHhcCCceeeEEecC
Q 043623 330 EWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 330 e~~~ll~~aGf~~~~~~~~~ 349 (359)
+|.++|+++||+++++....
T Consensus 167 ~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 167 EMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEEecc
Confidence 99999999999999887753
No 77
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.55 E-value=1.9e-14 Score=128.63 Aligned_cols=133 Identities=8% Similarity=-0.014 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCceEEeCCCCC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------------------TDNLKFIAGDMNQ 248 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------------------~~rv~~~~~d~~~ 248 (359)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+|+++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999987 568999999 778776532 2679999999998
Q ss_pred -CC---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc
Q 043623 249 -SI---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI 324 (359)
Q Consensus 249 -~~---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
+. ..||+|++..+||++++++..+++++++++||| ||+++++....+..... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 43 359999999999999988888899999999999 99987665543321100 0011
Q ss_pred ccCHHHHHHHHHhcCCceeeEEec
Q 043623 325 ERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 325 ~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
..+.+++.++|++ +|++..+...
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2489999999987 5998776543
No 78
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.55 E-value=4.5e-15 Score=128.41 Aligned_cols=151 Identities=11% Similarity=-0.000 Sum_probs=108.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vl 262 (359)
..++.+|||||||+|.++..++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 456789999999999986555544 5679999999 778877654 4689999999988 654 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhh-hhhhcCCcccCHHHHHHHHHhcCCc
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDAL-MMTCVPGIERSEKEWERLFFDAGFT 341 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~e~~~ll~~aGf~ 341 (359)
||++.++..+++++++++|+| ||.+++.+...++.............+... .........++.+++.++|+++||.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 176 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence 999877788999999999999 999999888765543211000000001000 0000123567999999999999997
Q ss_pred eeeEE
Q 043623 342 SYKIT 346 (359)
Q Consensus 342 ~~~~~ 346 (359)
..+..
T Consensus 177 ~~~~~ 181 (209)
T 2p8j_A 177 FKEDR 181 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76543
No 79
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.4e-14 Score=131.18 Aligned_cols=140 Identities=15% Similarity=0.142 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC-CC--------CCc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ-SI--------PSA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~-~~--------~~~ 253 (359)
.++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8899999999 778877653 5799999999988 42 249
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh--hcCCc--ccCHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT--CVPGI--ERSEK 329 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~--~~t~~ 329 (359)
|+|++..++|++ + ..++|+++++.|+| ||.+++.+...+.....+.. ...+.-.... ..+.. ....+
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~w~~p~~~ 185 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYADPIFPDYPEF---DDLMIEVPYGKQGLGPYWEQPGRS 185 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEEEEECTTCGGG---TTHHHHHHHCTTTTGGGSCTTHHH
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecCCccccCcHHH---HHHHHHhccCcccccchhhchhhH
Confidence 999999999999 4 45889999999999 99999855443222111100 0111111110 01111 13567
Q ss_pred HHHHHHHhcCCc
Q 043623 330 EWERLFFDAGFT 341 (359)
Q Consensus 330 e~~~ll~~aGf~ 341 (359)
.+.++++++||.
T Consensus 186 ~~~~~l~~~gfp 197 (299)
T 3g5t_A 186 RLRNMLKDSHLD 197 (299)
T ss_dssp HHHTTTTTCCCC
T ss_pred HHHHhhhccCCC
Confidence 789999999993
No 80
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.54 E-value=2.6e-14 Score=130.53 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCchHHHH----HHHHHCCCCeE--EEeec-hHHHhcCCC-------CCCceE--EeCCCCC-C------C
Q 043623 194 GLSSLVEVGGGTGSFAR----IISEAFPSIKC--SVLEL-PHVIADLPE-------TDNLKF--IAGDMNQ-S------I 250 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~i~~a~~-------~~rv~~--~~~d~~~-~------~ 250 (359)
++.+|||||||+|.++. .++.++|+.++ +++|. +++++.+++ ..++.+ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45799999999997655 44556788854 99998 788876543 134544 4555433 2 2
Q ss_pred C--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh--cCCccc
Q 043623 251 P--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC--VPGIER 326 (359)
Q Consensus 251 ~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~ 326 (359)
+ .||+|++.++||+++|.. +.|++++++||| ||++++...... . .. ...+....-... .....+
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~----~-~~--~~~~~~~~~~~~~~~~~~~~ 199 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSGS----S-GW--DKLWKKYGSRFPQDDLCQYI 199 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECTT----S-HH--HHHHHHHGGGSCCCTTCCCC
T ss_pred CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEEEecCC----c-cH--HHHHHHHHHhccCCCcccCC
Confidence 2 499999999999999864 679999999999 999999865321 1 01 111111110000 012457
Q ss_pred CHHHHHHHHHhcCCceeeE
Q 043623 327 SEKEWERLFFDAGFTSYKI 345 (359)
Q Consensus 327 t~~e~~~ll~~aGf~~~~~ 345 (359)
+.++|.++|+++||+++..
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998764
No 81
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.54 E-value=4e-14 Score=128.77 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=109.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~ 253 (359)
..+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 45555555 446789999999999999999998 569999999 778776654 2389999999988 444 49
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|+|++..++|+++++....+|+++++.|+| ||.++++.....+....+ ......++.+++.+
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE 247 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence 999999999999988888999999999999 999888766544432211 01123357888999
Q ss_pred HHHhcCCceeeEE
Q 043623 334 LFFDAGFTSYKIT 346 (359)
Q Consensus 334 ll~~aGf~~~~~~ 346 (359)
+++. |.++...
T Consensus 248 ~~~~--~~~~~~~ 258 (286)
T 3m70_A 248 YYKD--WEFLEYN 258 (286)
T ss_dssp HTTT--SEEEEEE
T ss_pred HhcC--CEEEEEE
Confidence 9865 8887764
No 82
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.53 E-value=9.9e-15 Score=130.91 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CC------------------------------
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TD------------------------------ 237 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~------------------------------ 237 (359)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4567999999999999999988765 58999999 777776643 11
Q ss_pred -Cc-eEEeCCCCC-CC------CCccEEEecchhccCCh--hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchH
Q 043623 238 -NL-KFIAGDMNQ-SI------PSADAFLFKLIFHDYDD--EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEI 306 (359)
Q Consensus 238 -rv-~~~~~d~~~-~~------~~~D~i~~~~vlh~~~d--~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 306 (359)
++ +++.+|+.+ +. ..||+|++..+||+.++ ++..++|++++++|+| ||++++.+......
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~------ 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSSY------ 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE------
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCce------
Confidence 27 899999987 22 24999999999995433 2567899999999999 99999888532210
Q ss_pred HHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecC
Q 043623 307 TEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 307 ~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
+... .........+.++|.++|+++||+++++...+
T Consensus 205 ------~~~~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 ------YMIG-EQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ------EEET-TEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ------EEcC-CccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0000 00011234589999999999999999887654
No 83
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.51 E-value=3.1e-13 Score=113.38 Aligned_cols=127 Identities=13% Similarity=0.171 Sum_probs=101.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCC--CccEEEecchhccCChh-
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIP--SADAFLFKLIFHDYDDE- 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~--~~D~i~~~~vlh~~~d~- 268 (359)
.++.+|||+|||+|.++..+++.. +++++|+ +.+++. .++++++.+|+.++.+ .||+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 456799999999999999999986 9999999 778887 5789999999998554 49999999888865544
Q ss_pred ------HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCce
Q 043623 269 ------VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTS 342 (359)
Q Consensus 269 ------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 342 (359)
+...+++++.+.+ | ||++++..... .+.+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence 3457889999999 8 89999877421 15778899999999999
Q ss_pred eeEEec-CCcceEEEE
Q 043623 343 YKITPL-LGLRSFIEV 357 (359)
Q Consensus 343 ~~~~~~-~~~~~~i~~ 357 (359)
..+... .+...++..
T Consensus 144 ~~~~~~~~~~e~~~~~ 159 (170)
T 3q87_B 144 RILKVRKILGETVYII 159 (170)
T ss_dssp EEEEEEECSSSEEEEE
T ss_pred EEEEeeccCCceEEEE
Confidence 888776 344444443
No 84
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.51 E-value=5.5e-14 Score=128.25 Aligned_cols=153 Identities=12% Similarity=0.001 Sum_probs=108.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CC-C--CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SI-P--SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~-~--~~D~i~~~ 259 (359)
+.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998876 4569999999 778776653 2578999999998 55 2 49999999
Q ss_pred chhcc--CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC-------CCch-----------HHH-HHHHhhhhhh
Q 043623 260 LIFHD--YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK-------DKPE-----------ITE-AKLLYDALMM 318 (359)
Q Consensus 260 ~vlh~--~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~-------~~~~-----------~~~-~~~~~~~~~~ 318 (359)
.++|+ .+.++..++|++++++|+| ||++++..+...... .... .+. ....+.+.+.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99998 5666778999999999999 999998775432100 0000 000 0000000000
Q ss_pred h---hcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 319 T---CVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 319 ~---~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
. ......++.++|.++|+++||+++++..+
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 0 01124568999999999999999998765
No 85
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.50 E-value=1.7e-13 Score=120.69 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=101.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhc----CCCCCCceEEeCCCCC-----CC-CCccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD----LPETDNLKFIAGDMNQ-----SI-PSADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~----a~~~~rv~~~~~d~~~-----~~-~~~D~i~~~~ 260 (359)
+.++.+|||||||+|.++..+++..|..+++++|+ +.+++. ++..+++.++.+|+.+ +. ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999988789999999 667654 3335789999999876 12 2499998
Q ss_pred hhccCChh-HHHHHHHHHHHhcCCCCCCceEEEEeeecCC-CCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623 261 IFHDYDDE-VCLKLLKNCREAVASSDGREKVIIVDIVVNE-KKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA 338 (359)
Q Consensus 261 vlh~~~d~-~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a 338 (359)
|+.++. ....+|+++.+.|+| ||++++. ..... ....+ .. . ...+++. +|+++
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~---~~-~--------------~~~~~l~-~l~~~ 203 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTKD---PK-E--------------IFKEQKE-ILEAG 203 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSSC---HH-H--------------HHHHHHH-HHHHH
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCCC---HH-H--------------hhHHHHH-HHHHC
Confidence 555443 345679999999999 8999887 22111 11111 00 0 0247788 99999
Q ss_pred CCceeeEEecCCc---ceEEEEE
Q 043623 339 GFTSYKITPLLGL---RSFIEVY 358 (359)
Q Consensus 339 Gf~~~~~~~~~~~---~~~i~~~ 358 (359)
||+.+++..+..+ +.++.++
T Consensus 204 Gf~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 204 GFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp TEEEEEEEECTTTSTTEEEEEEE
T ss_pred CCEEEEEEccCCCccceEEEEEE
Confidence 9999999888554 5566655
No 86
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.49 E-value=1e-14 Score=133.02 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=87.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC-C
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ-S 249 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~-~ 249 (359)
..+...++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++.+..+|+.+ +
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 34444444 4567899999999999999999984 49999999 778877642 3578899999887 5
Q ss_pred ---CC--CccEEEec-chhccCCh-----hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 250 ---IP--SADAFLFK-LIFHDYDD-----EVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 250 ---~~--~~D~i~~~-~vlh~~~d-----~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
++ .||+|++. +++||+++ ++..++|++++++|+| ||++++..+
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 176 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHR 176 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 44 49999998 89999988 6678999999999999 899988754
No 87
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.49 E-value=2.9e-13 Score=116.80 Aligned_cols=124 Identities=11% Similarity=0.236 Sum_probs=99.5
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCC---CCC
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQS---IPS 252 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~---~~~ 252 (359)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 4455555 66788999999999999999999999999999999 788877664 37899999999773 245
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~ 332 (359)
||+|++...++ ...++++++.+.|+| ||++++...... +.+++.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~~----------------------------~~~~~~ 152 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTLD----------------------------TLTKAV 152 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBHH----------------------------HHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecccc----------------------------cHHHHH
Confidence 99999998876 345789999999999 999988654210 466788
Q ss_pred HHHHhcCCceeeE
Q 043623 333 RLFFDAGFTSYKI 345 (359)
Q Consensus 333 ~ll~~aGf~~~~~ 345 (359)
++++++|| .+++
T Consensus 153 ~~l~~~g~-~~~~ 164 (204)
T 3e05_A 153 EFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHTTC-EEEE
T ss_pred HHHHHCCC-ceeE
Confidence 89999998 4443
No 88
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.49 E-value=1.1e-13 Score=119.43 Aligned_cols=130 Identities=11% Similarity=0.084 Sum_probs=104.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC-CCccEEEecchhc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI-PSADAFLFKLIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~-~~~D~i~~~~vlh 263 (359)
..++.+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..+++++.+|+.+.. ..||+|++...+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 35678999999999999999876 56679999999 778776654 234999999998843 3599999998776
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 343 (359)
+ ..++++++++.|+| ||++++.+.... +.+++.++++++||+.+
T Consensus 137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence 4 35789999999999 899988655321 46788999999999999
Q ss_pred eEEecCCcceEEEEE
Q 043623 344 KITPLLGLRSFIEVY 358 (359)
Q Consensus 344 ~~~~~~~~~~~i~~~ 358 (359)
++.......+++.-+
T Consensus 181 ~~~~~~~w~~~~~~~ 195 (205)
T 3grz_A 181 LKMRAGRWIGLAISR 195 (205)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EeeccCCEEEEEEec
Confidence 988887777776543
No 89
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.49 E-value=3.9e-13 Score=119.68 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=80.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEec-chh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFK-LIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~-~vl 262 (359)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. ..+
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence 356689999999999999999986 568999999 788877653 4479999999988 554 49999987 456
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
++++.++..++|++++++|+| ||.+++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 117 MYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 777777788999999999999 8887764
No 90
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.48 E-value=1.1e-14 Score=131.09 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=98.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-------------------------------
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----T------------------------------- 236 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~------------------------------- 236 (359)
.++.+|||||||+|.++..++.... .+++++|+ +.+++.+++ .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4567999999999988776555432 26999999 778875542 0
Q ss_pred CCce-EEeCCCCC--CC-----CCccEEEecchhccC-C-hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchH
Q 043623 237 DNLK-FIAGDMNQ--SI-----PSADAFLFKLIFHDY-D-DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEI 306 (359)
Q Consensus 237 ~rv~-~~~~d~~~--~~-----~~~D~i~~~~vlh~~-~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~ 306 (359)
.+|+ ++.+|+.+ ++ +.||+|+++.+||+. + .++..++|++++++||| ||.+++........ ..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~-~~--- 205 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPS-YM--- 205 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE-EE---
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCcc-ce---
Confidence 1233 88899887 32 359999999999985 2 35567899999999999 99999986542211 00
Q ss_pred HHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 307 TEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 307 ~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
..- .......++.++|.++|+++||+++++...
T Consensus 206 ------~g~---~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 206 ------VGK---REFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp ------ETT---EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------eCC---eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 000 001122358999999999999999988764
No 91
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.48 E-value=2.2e-13 Score=117.15 Aligned_cols=134 Identities=7% Similarity=0.049 Sum_probs=101.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh 263 (359)
++. +|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++. ++
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FC 103 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CC
T ss_pred CCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hh
Confidence 345 9999999999999999986 569999999 778877664 3489999999988 554 49999985 34
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 343 (359)
+++.++..++|+++++.|+| ||.+++..+........ .. ........++.+++.++|+ ||+++
T Consensus 104 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 104 HLPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQYN---------TG---GPKDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp CCCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGGT---------SC---CSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccCC---------CC---CCCcceeecCHHHHHHHhc--CceEE
Confidence 55766778999999999999 99999988754332100 00 0001123569999999999 99998
Q ss_pred eEEec
Q 043623 344 KITPL 348 (359)
Q Consensus 344 ~~~~~ 348 (359)
++...
T Consensus 167 ~~~~~ 171 (202)
T 2kw5_A 167 IANNL 171 (202)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87654
No 92
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.47 E-value=7.9e-14 Score=133.71 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=106.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC------CC--CC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ------SI--PS 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~------~~--~~ 252 (359)
..+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. ++ ..
T Consensus 97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 45666665 567789999999999999999986 458999999 7788877653 33333322221 22 25
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~ 332 (359)
||+|++.++|||+++. ..+|++++++|+| ||++++..+..... .....++. ........++.++|.
T Consensus 172 fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~-------~~~~~~~~--~~~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGDI-------VAKTSFDQ--IFDEHFFLFSATSVQ 237 (416)
T ss_dssp EEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHHH-------HHHTCGGG--CSTTCCEECCHHHHH
T ss_pred EEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHHh-------hhhcchhh--hhhhhhhcCCHHHHH
Confidence 9999999999999875 5789999999999 89888865542110 00001111 101233457999999
Q ss_pred HHHHhcCCceeeEEecC
Q 043623 333 RLFFDAGFTSYKITPLL 349 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~ 349 (359)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998865
No 93
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.47 E-value=2e-13 Score=122.03 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=103.0
Q ss_pred CCCeEEEEcCCc--hHHHHHH-HHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCC-C--------CCcc
Q 043623 194 GLSSLVEVGGGT--GSFARII-SEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQS-I--------PSAD 254 (359)
Q Consensus 194 ~~~~vlDvG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~-~--------~~~D 254 (359)
+..+|||||||+ +.++..+ .+..|+.+++++|. |.|++.++. ..+++|+.+|+.++ . ..||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 557999999997 4444554 44689999999999 899998874 24799999999872 1 1255
Q ss_pred -----EEEecchhccCChhH-HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCH
Q 043623 255 -----AFLFKLIFHDYDDEV-CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSE 328 (359)
Q Consensus 255 -----~i~~~~vlh~~~d~~-~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
+++++.+||++++++ ...+|++++++|+| ||.|++.+...+... . ........+.........|+.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p--~---~~~~~~~~~~~~g~p~~~rs~ 229 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAP--Q---EVGRVAREYAARNMPMRLRTH 229 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSH--H---HHHHHHHHHHHTTCCCCCCCH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCH--H---HHHHHHHHHHhcCCCCccCCH
Confidence 688999999999876 46899999999999 999999887654221 0 111122222222234567899
Q ss_pred HHHHHHHHhcCCceee
Q 043623 329 KEWERLFFDAGFTSYK 344 (359)
Q Consensus 329 ~e~~~ll~~aGf~~~~ 344 (359)
+|+.++|. ||..++
T Consensus 230 ~ei~~~f~--Glelve 243 (277)
T 3giw_A 230 AEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHTTT--TSEECT
T ss_pred HHHHHHhC--CCcccC
Confidence 99999995 999765
No 94
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.46 E-value=2.1e-13 Score=118.10 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEEEecchhccCC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSI-KCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYD 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~ 266 (359)
.++.+|||||||+|.++..+ +. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++|+++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 36789999999999999887 45 8999999 778877664 4789999999988 655 499999999999998
Q ss_pred hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhh---hhcCCcccCHHHHHHHHHhcC
Q 043623 267 DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMM---TCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 267 d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~t~~e~~~ll~~aG 339 (359)
+. .++|+++++.|+| ||++++..+..... . .......... .....+.++.+++.++|+ |
T Consensus 110 ~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 110 DV--ERVLLEARRVLRP---GGALVVGVLEALSP-----W--AALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp CH--HHHHHHHHHHEEE---EEEEEEEEECTTSH-----H--HHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred CH--HHHHHHHHHHcCC---CCEEEEEecCCcCc-----H--HHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 75 4789999999999 99999987753221 0 0000100000 011345679999999999 7
No 95
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.46 E-value=1.4e-13 Score=120.07 Aligned_cols=150 Identities=11% Similarity=0.093 Sum_probs=98.1
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhc----CCC------CCCceEEeCCCCC-CC
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD----LPE------TDNLKFIAGDMNQ-SI 250 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~----a~~------~~rv~~~~~d~~~-~~ 250 (359)
..+..+. ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ ++
T Consensus 18 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~ 95 (218)
T 3mq2_A 18 AEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP 95 (218)
T ss_dssp HHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS
T ss_pred HHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC
Confidence 3344444 56678999999999999999999999999999999 665553 221 4589999999998 55
Q ss_pred CC-ccEEE---ecchhc--cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc
Q 043623 251 PS-ADAFL---FKLIFH--DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI 324 (359)
Q Consensus 251 ~~-~D~i~---~~~vlh--~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
+. .|.|. ....+| +.++. .++|++++++||| ||++++.-.........+ . ..... ....
T Consensus 96 ~~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~----~~~~ 160 (218)
T 3mq2_A 96 LSGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSVP---E---VGEHP----EPTP 160 (218)
T ss_dssp CCCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBCG---G---GTTCC----CCCH
T ss_pred CCCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEecccccccccc---c---cccCC----ccch
Confidence 41 25544 223332 44544 4789999999999 898888432211111000 0 00000 0011
Q ss_pred ccCHHHHHHHHHhcCCceeeEEecC
Q 043623 325 ERSEKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 325 ~~t~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
.+..+++.++++++||++.++..+.
T Consensus 161 ~~~~~~l~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 161 DSADEWLAPRYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCceeeeccc
Confidence 1234568889999999998886653
No 96
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.44 E-value=9.8e-14 Score=126.43 Aligned_cols=138 Identities=11% Similarity=0.178 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--C------------C---------------------
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--T------------D--------------------- 237 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~------------~--------------------- 237 (359)
++.+|||||||+|.++ .++...+..+++++|+ +.+++.+++ . .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445569999999 778765542 0 0
Q ss_pred -CceEEeCCCCC--C-----CCC--ccEEEecchhccCChh--HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCch
Q 043623 238 -NLKFIAGDMNQ--S-----IPS--ADAFLFKLIFHDYDDE--VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPE 305 (359)
Q Consensus 238 -rv~~~~~d~~~--~-----~~~--~D~i~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~ 305 (359)
.++++.+|+.+ + +++ ||+|+++.+||+.++. +..++|++++++||| ||++++.+...... ..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~-~~-- 223 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESW-YL-- 223 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCE-EE--
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcce-EE--
Confidence 13466668876 2 222 9999999999985433 567899999999999 99999986432110 00
Q ss_pred HHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 306 ITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
..+ .......++.++|.++|+++||+++++...
T Consensus 224 ------~~~----~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 224 ------AGE----ARLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp ------ETT----EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------cCC----eeeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 000 001123468999999999999999887654
No 97
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.43 E-value=1.5e-12 Score=117.79 Aligned_cols=135 Identities=11% Similarity=0.138 Sum_probs=105.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC--CCccEEEecc---
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI--PSADAFLFKL--- 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~--~~~D~i~~~~--- 260 (359)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|++++. ..||+|+++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3567999999999999999999999999999999 778776654 247999999998844 3599999983
Q ss_pred ----------hhccCCh----------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhh
Q 043623 261 ----------IFHDYDD----------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTC 320 (359)
Q Consensus 261 ----------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
++++.+. ....++++++.+.|+| ||.+++... .
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~-------~----------------- 240 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG-------W----------------- 240 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC-------S-----------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-------c-----------------
Confidence 4443331 3346889999999999 888777411 0
Q ss_pred cCCcccCHHHHHHHHHhcCCceeeEEe-cCCcceEEEEEC
Q 043623 321 VPGIERSEKEWERLFFDAGFTSYKITP-LLGLRSFIEVYL 359 (359)
Q Consensus 321 ~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 359 (359)
.+.+++.++++++||+.+++.. ..+...++.+++
T Consensus 241 -----~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 241 -----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp -----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred -----hHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 1577889999999999888765 466677777764
No 98
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.42 E-value=2e-13 Score=119.87 Aligned_cols=146 Identities=9% Similarity=0.048 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-H-HHhcC---CC------CCCceEEeCCCCC-CCCCccEEEecc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-H-VIADL---PE------TDNLKFIAGDMNQ-SIPSADAFLFKL 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~-~i~~a---~~------~~rv~~~~~d~~~-~~~~~D~i~~~~ 260 (359)
.++.+|||||||+|.++..++++.|+.+++++|+. + +++.| ++ ..++.++.+|+.+ +...+|.|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 46679999999999999999998999999999993 4 44433 43 3579999999887 322245554444
Q ss_pred hhccCChhH------HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHH
Q 043623 261 IFHDYDDEV------CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERL 334 (359)
Q Consensus 261 vlh~~~d~~------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~l 334 (359)
+.+.|+... ...+|++++++||| ||++++...........+ . ....... ........+++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~-~----~~~~~~~---~~~~~~~~~el~~~ 171 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDSYEEAE-I----KKRGLPL---LSKAYFLSEQYKAE 171 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEeccccchhch-h----hhcCCCC---CChhhcchHHHHHH
Confidence 433333210 13579999999999 999988443333211000 0 0000000 00000122359999
Q ss_pred HHhcCCceeeEEecC
Q 043623 335 FFDAGFTSYKITPLL 349 (359)
Q Consensus 335 l~~aGf~~~~~~~~~ 349 (359)
++++||++.++...+
T Consensus 172 l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 172 LSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCCeeeeeecC
Confidence 999999998877654
No 99
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.42 E-value=3.2e-13 Score=117.44 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=83.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD 264 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~ 264 (359)
..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4456899999999999999999885 48999999 777776553 4689999999998 422 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 265 YDD-EVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 265 ~~d-~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+++ +...++|+++++.|+| ||.+++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 986 4556899999999999 8998887653
No 100
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.40 E-value=1.8e-12 Score=110.05 Aligned_cols=141 Identities=12% Similarity=0.258 Sum_probs=106.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC--CceEEeCCCCCCCC-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TD--NLKFIAGDMNQSIP- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~--rv~~~~~d~~~~~~- 251 (359)
..+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. +++++.+|+.+..+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 44555555 557789999999999999999988 679999999 777776653 23 49999999988433
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e 330 (359)
.||+|++...+|+ ..+...++++++.+.|+| ||.+++...... ...+
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 165 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQ----------------------------GAKS 165 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTH----------------------------HHHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCC----------------------------ChHH
Confidence 4999999888764 345567899999999999 899988776320 1235
Q ss_pred HHHHHHhcCCceeeEEecCCcceEEEEEC
Q 043623 331 WERLFFDAGFTSYKITPLLGLRSFIEVYL 359 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 359 (359)
+.+.+++. |..+++......+.++.++|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 66777777 66677777666666666654
No 101
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.40 E-value=5.5e-13 Score=125.06 Aligned_cols=113 Identities=11% Similarity=0.057 Sum_probs=90.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCceEEeCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---------------TDNLKFIAGD 245 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---------------~~rv~~~~~d 245 (359)
..++..+. +.++.+|||||||+|.++..++...+..+++|+|+ +.+++.|++ .++|+|+.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555555 67889999999999999999999887667999999 666554432 3789999999
Q ss_pred CCC-CC----CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC
Q 043623 246 MNQ-SI----PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD 302 (359)
Q Consensus 246 ~~~-~~----~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~ 302 (359)
+++ ++ ..||+|+++++++ + ++..+.|+++++.||| ||+|++.|.+.++...
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~~ 296 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNFR 296 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTCC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCCC
Confidence 998 55 3599999988764 3 3456778999999999 9999999999887653
No 102
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.40 E-value=3e-12 Score=111.13 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=95.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHH----hcCCCCCCceEEeCCCCCC-----CC-CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVI----ADLPETDNLKFIAGDMNQS-----IP-SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i----~~a~~~~rv~~~~~d~~~~-----~~-~~D~i~~~~ 260 (359)
..++.+|||||||+|.++..+++..++.+++++|+ +.++ +.++...++.++.+|+..+ ++ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988779999999 6543 4444356899999998762 22 49999987
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH----HHHHH
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW----ERLFF 336 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~----~~ll~ 336 (359)
+.+ .++...+++++++.||| ||++++.-...+.... .+.+++ .+.++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~-----------------------~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARSIDST-----------------------AEPEEVFKSVLKEME 184 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHHCTT-----------------------SCHHHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCCcccc-----------------------CCHHHHHHHHHHHHH
Confidence 322 23344569999999999 9999887322110000 022222 12388
Q ss_pred hcCCceeeEEecCC---cceEEEEEC
Q 043623 337 DAGFTSYKITPLLG---LRSFIEVYL 359 (359)
Q Consensus 337 ~aGf~~~~~~~~~~---~~~~i~~~~ 359 (359)
++ |++.+...... .+.++.+++
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 88 99999988733 456666653
No 103
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.40 E-value=2.2e-13 Score=117.94 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCC--C-----CCccEEEec
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQS--I-----PSADAFLFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~--~-----~~~D~i~~~ 259 (359)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.++ . ..||+|+++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 788888775 11788999998873 2 459999996
Q ss_pred chhc------cCChhHH------------------HHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh
Q 043623 260 LIFH------DYDDEVC------------------LKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA 315 (359)
Q Consensus 260 ~vlh------~~~d~~~------------------~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~ 315 (359)
..++ +++++.. .++++++++.|+| ||++++++...
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~------------------ 167 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVGH------------------ 167 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECTT------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEECC------------------
Confidence 4443 3322222 6789999999999 99966655421
Q ss_pred hhhhhcCCcccCHHHHHHHHH--hcCCceeeEEecC-CcceEEEEE
Q 043623 316 LMMTCVPGIERSEKEWERLFF--DAGFTSYKITPLL-GLRSFIEVY 358 (359)
Q Consensus 316 ~~~~~~~g~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~~i~~~ 358 (359)
...+++.++++ ++||..+++.... +...++.++
T Consensus 168 ----------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 ----------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ----------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ----------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 14567788888 9999988887763 445565554
No 104
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.39 E-value=7.8e-13 Score=111.13 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=93.7
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CC--
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SI-- 250 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~-- 250 (359)
.++..+. ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++ ++.+|..+ +.
T Consensus 16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 3444444 56678999999999999999999999999999999 777776653 3378 88888866 32
Q ss_pred CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623 251 PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE 330 (359)
Q Consensus 251 ~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e 330 (359)
+.||+|++..++|+ .++++++.+.|+| ||++++.....+ +...
T Consensus 93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 135 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAVTVE----------------------------SEQM 135 (178)
T ss_dssp SCCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEECSHH----------------------------HHHH
T ss_pred CCCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEeeccc----------------------------cHHH
Confidence 45999999999987 3679999999999 999988765321 2445
Q ss_pred HHHHHHhcCCceeeE
Q 043623 331 WERLFFDAGFTSYKI 345 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~ 345 (359)
+.+++++.|+...++
T Consensus 136 ~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 136 LWALRKQFGGTISSF 150 (178)
T ss_dssp HHHHHHHHCCEEEEE
T ss_pred HHHHHHHcCCeeEEE
Confidence 567777777766554
No 105
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.39 E-value=1.1e-12 Score=114.85 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=98.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcC----CCCCCceEEeCCCCCC--CC----CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADL----PETDNLKFIAGDMNQS--IP----SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a----~~~~rv~~~~~d~~~~--~~----~~D~i~~~ 259 (359)
++++.+|||+|||+|.++..+++. .|+-+++++|+ +++++.+ ++..++..+.+|..++ .+ .+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 688999999999999999999987 58899999999 7777654 3467899999988762 11 38988753
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
+++.. +...+++++++.||| ||+++|...........+ .....++-.+.|+++|
T Consensus 155 --~~~~~--~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~p-------------------~~~~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 --VAQPE--QAAIVVRNARFFLRD---GGYMLMAIKARSIDVTTE-------------------PSEVYKREIKTLMDGG 208 (233)
T ss_dssp --CCCTT--HHHHHHHHHHHHEEE---EEEEEEEEECCHHHHHTC-------------------CCHHHHHHHHHHHHTT
T ss_pred --ccCCh--hHHHHHHHHHHhccC---CCEEEEEEecccCCCCCC-------------------hHHHHHHHHHHHHHCC
Confidence 22222 245789999999999 999988653221111000 0001234456788999
Q ss_pred CceeeEEecCCc---ceEEEE
Q 043623 340 FTSYKITPLLGL---RSFIEV 357 (359)
Q Consensus 340 f~~~~~~~~~~~---~~~i~~ 357 (359)
|+..+...+..+ +.++.+
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~ 229 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYA 229 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEE
T ss_pred CEEEEEEccCCCCCceEEEEE
Confidence 999999888543 455554
No 106
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.38 E-value=6.5e-14 Score=123.96 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC---CCC--CccEEEe---
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ---SIP--SADAFLF--- 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~---~~~--~~D~i~~--- 258 (359)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.+++ ..+++++.+|..+ +++ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 56789999999999999999988775 8999999 888887764 5678888888654 333 3888864
Q ss_pred --cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHH
Q 043623 259 --KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFF 336 (359)
Q Consensus 259 --~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~ 336 (359)
...++++.+ ...++++++++||| ||++++.+......... ..++ .-.....+.+...|.
T Consensus 138 ~~~~~~~~~~~--~~~~~~e~~rvLkP---GG~l~f~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~L~ 198 (236)
T 3orh_A 138 PLSEETWHTHQ--FNFIKNHAFRLLKP---GGVLTYCNLTSWGELMK-------SKYS-------DITIMFEETQVPALL 198 (236)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEE---EEEEEECCHHHHHHHTT-------TTCS-------CHHHHHHHHTHHHHH
T ss_pred ecccchhhhcc--hhhhhhhhhheeCC---CCEEEEEecCCchhhhh-------hhhh-------hhhhhhHHHHHHHHH
Confidence 445555555 45789999999999 89887754321100000 0000 000012456777888
Q ss_pred hcCCceeeE
Q 043623 337 DAGFTSYKI 345 (359)
Q Consensus 337 ~aGf~~~~~ 345 (359)
++||++..+
T Consensus 199 eaGF~~~~i 207 (236)
T 3orh_A 199 EAGFRRENI 207 (236)
T ss_dssp HHTCCGGGE
T ss_pred HcCCeEEEE
Confidence 999997665
No 107
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=114.71 Aligned_cols=140 Identities=11% Similarity=0.105 Sum_probs=96.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHH----HhcCCCCCCceEEeCCCCCC--C----CCccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHV----IADLPETDNLKFIAGDMNQS--I----PSADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----i~~a~~~~rv~~~~~d~~~~--~----~~~D~i~~~ 259 (359)
+.++.+|||+|||+|.++..+++.. |+.+++++|+ +.+ ++.++...+++++.+|+.++ . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5667899999999999999999986 7789999999 554 44444358899999999872 2 249999985
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC-CCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhc
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE-KKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDA 338 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~a 338 (359)
.. ..+....++.++++.|+| ||.+++. ..... ....+ .. .. -..+ .++|+++
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~---~~-~~--------------~~~~-~~~l~~~ 207 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVIS-IKANCIDSTAS---AE-AV--------------FASE-VKKMQQE 207 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEEE-EEHHHHCSSSC---HH-HH--------------HHHH-HHTTGGG
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEEE-EcccccccCCC---HH-HH--------------HHHH-HHHHHHC
Confidence 43 233345678999999999 8888883 32210 11111 00 00 0123 5889999
Q ss_pred CCceeeEEecCCc---ceEEEEE
Q 043623 339 GFTSYKITPLLGL---RSFIEVY 358 (359)
Q Consensus 339 Gf~~~~~~~~~~~---~~~i~~~ 358 (359)
||+++++..+..+ +.++.++
T Consensus 208 Gf~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 208 NMKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp TEEEEEEEECTTTSSSEEEEEEE
T ss_pred CCceEEEEecCCccCCcEEEEEE
Confidence 9999997776433 5555544
No 108
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.37 E-value=3e-12 Score=128.66 Aligned_cols=101 Identities=12% Similarity=0.154 Sum_probs=86.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------------CCCceEEeCCCCC-CCC--Ccc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------------TDNLKFIAGDMNQ-SIP--SAD 254 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------------~~rv~~~~~d~~~-~~~--~~D 254 (359)
..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ..+|+++.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3467899999999999999999998 5679999999 778776643 3579999999998 554 499
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+|++..++||++++....+++++++.|+| | .++|..+.
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN 836 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPN 836 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECB
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecC
Confidence 99999999999998888899999999999 6 66666554
No 109
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=113.03 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=84.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC--CccEEEecchhc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP--SADAFLFKLIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh 263 (359)
+.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 456789999999999999999998665 8999999 777776553 3689999999988 655 499999999997
Q ss_pred cCC-------------hhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 264 DYD-------------DEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 264 ~~~-------------d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
++. .+...++|++++++|+| ||++++.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~ 161 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSA 161 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCC
Confidence 765 34567899999999999 9999998764
No 110
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.37 E-value=2.1e-12 Score=118.44 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=99.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-------CceEEeCCCCC---------CCC
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TD-------NLKFIAGDMNQ---------SIP 251 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~-------rv~~~~~d~~~---------~~~ 251 (359)
++.+|||||||+|..+..++.. ...+++|+|+ +.+++.|++ .. +++|...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877776664 3458999999 889888774 11 25687887721 223
Q ss_pred --CccEEEecchhccC-ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCC----------c-hHHH-HHHH----
Q 043623 252 --SADAFLFKLIFHDY-DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDK----------P-EITE-AKLL---- 312 (359)
Q Consensus 252 --~~D~i~~~~vlh~~-~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~----------~-~~~~-~~~~---- 312 (359)
.||+|++..++|+. ++++..++|++++++||| ||.+++..+........ . .... ....
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 49999999999874 545567999999999999 99988876532211000 0 0000 0000
Q ss_pred hhhh-hhhhcC------CcccCHHHHHHHHHhcCCceeeEEec
Q 043623 313 YDAL-MMTCVP------GIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 313 ~~~~-~~~~~~------g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
.+.. .....+ -...+.+++.++++++||++++....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 0000 000011 12467899999999999999888654
No 111
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.34 E-value=2e-12 Score=115.63 Aligned_cols=106 Identities=14% Similarity=0.050 Sum_probs=81.5
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC----C-CCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ----S-IPS 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~----~-~~~ 252 (359)
..++..++ ..++.+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ...+.....++.. . ...
T Consensus 35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 55666665 677889999999999999999987 468999999 788887764 1222222222211 1 125
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
||+|++..++|+++.++...+++++.++| | ||++++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 99999999999999888889999999999 9 999988644
No 112
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.34 E-value=2.6e-11 Score=106.25 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=98.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhc----CCCCCCceEEeCCCCCC-----CC-CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIAD----LPETDNLKFIAGDMNQS-----IP-SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~----a~~~~rv~~~~~d~~~~-----~~-~~D~i~~~ 259 (359)
+.++.+|||+|||+|.++..+++.. |+.+++++|. +.+++. ++..++++++.+|+.++ .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999884 6679999999 655443 34457899999999871 23 49999975
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
.. .......+++++++.|+| ||++++. ..........+ .. ....+++.++ +++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~--~~---------------~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTKE--PE---------------QVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTSC--HH---------------HHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCCC--hh---------------hhhHHHHHHH-Hhh-
Confidence 43 222334559999999999 9999887 32221111110 00 0136777777 777
Q ss_pred CceeeEEecCCc---ceEEEEEC
Q 043623 340 FTSYKITPLLGL---RSFIEVYL 359 (359)
Q Consensus 340 f~~~~~~~~~~~---~~~i~~~~ 359 (359)
|++++...+..+ +.++.++|
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred ceeeeEeccCcccCCCEEEEEEe
Confidence 999998888554 56666654
No 113
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.34 E-value=1.1e-12 Score=118.10 Aligned_cols=96 Identities=13% Similarity=0.193 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCchH----HHHHHHHHCC----CCeEEEeec-hHHHhcCCCC----------------------------
Q 043623 194 GLSSLVEVGGGTGS----FARIISEAFP----SIKCSVLEL-PHVIADLPET---------------------------- 236 (359)
Q Consensus 194 ~~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~i~~a~~~---------------------------- 236 (359)
+..+|+|+|||||. +++.+++..| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 6666777655 468999999 7888766431
Q ss_pred ---------CCceEEeCCCCC-CCC---CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 237 ---------DNLKFIAGDMNQ-SIP---SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 237 ---------~rv~~~~~d~~~-~~~---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
.+|+|..+|+.+ +++ .||+|+|.++|++++++...+++++++++|+| ||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 369999999998 564 49999999999999988888999999999999 888776
No 114
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.34 E-value=2.2e-13 Score=121.69 Aligned_cols=144 Identities=12% Similarity=0.107 Sum_probs=95.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC----CCC-----CccEE
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ----SIP-----SADAF 256 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~----~~~-----~~D~i 256 (359)
++.+|||+|||+|.++..++++.|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999888899999999 788877653 4579999998533 333 49999
Q ss_pred EecchhccCCh-------------hHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCC
Q 043623 257 LFKLIFHDYDD-------------EVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG 323 (359)
Q Consensus 257 ~~~~vlh~~~d-------------~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (359)
+++-.+|.... +....++.+++++|+| ||.+.+++..... .........+.....+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~--------~~~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHD--------SLQLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHH--------HHHHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHH--------HHhcccceEEEEECCC
Confidence 99866654331 1123567889999999 8988877643211 0000000000111123
Q ss_pred cccCHHHHHHHHHhcCCceeeEEec
Q 043623 324 IERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 324 ~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
...+.+++.++|+++||+.+++..+
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 4445689999999999999888776
No 115
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.34 E-value=6.4e-12 Score=110.26 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=95.6
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCC--CCCC--CccEEEecc
Q 043623 192 FDGLSSLVEVGGG-TGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMN--QSIP--SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~--~~~~--~~D~i~~~~ 260 (359)
++++.+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+. .+++ .||+|+++-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4677899999999 999999999986 679999999 778877653 238999999964 3443 499999887
Q ss_pred hhccCChhH-----------------HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCC
Q 043623 261 IFHDYDDEV-----------------CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPG 323 (359)
Q Consensus 261 vlh~~~d~~-----------------~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (359)
.++..++.. ..++++.+.+.|+| ||+++++-+...
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDKE------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESCH-------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecccH-------------------------
Confidence 766544322 26789999999999 899988633210
Q ss_pred cccCHHHHHHHHHhcCCceeeEEecCC
Q 043623 324 IERSEKEWERLFFDAGFTSYKITPLLG 350 (359)
Q Consensus 324 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 350 (359)
...+++.+++++.||.+..+....+
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCC
Confidence 0367888999999998777655544
No 116
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.33 E-value=3.5e-13 Score=119.07 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=78.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC---CCC--CccEEEe-cc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ---SIP--SADAFLF-KL 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~---~~~--~~D~i~~-~~ 260 (359)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999976544 38999999 788776654 4679999999875 344 4999999 55
Q ss_pred h--hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 261 I--FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 261 v--lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
. .+.+.......++++++++||| ||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 4 3344444455789999999999 9999887654
No 117
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.33 E-value=6.2e-12 Score=109.59 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=101.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC---CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP---SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~---~~D~i~~~~ 260 (359)
.+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.+++++ .||+|+..+
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 34668999999999999999999999989999999 777777664 5689999999988544 499999876
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
+ ..+....+|..+.+.|+| +|++++ .+.. ..+.++++|.+.||
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~~---~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLAN---VERLIL-QPNN-----------------------------REDDLRIWLQDHGF 135 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCTT---CCEEEE-EESS-----------------------------CHHHHHHHHHHTTE
T ss_pred C----ChHHHHHHHHHHHHHhCC---CCEEEE-ECCC-----------------------------CHHHHHHHHHHCCC
Confidence 4 344467899999999999 777666 3320 35667889999999
Q ss_pred ceeeEEec---CCcceEEEEE
Q 043623 341 TSYKITPL---LGLRSFIEVY 358 (359)
Q Consensus 341 ~~~~~~~~---~~~~~~i~~~ 358 (359)
.+.+-.-+ +-++.+|.+.
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98886543 3356676654
No 118
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.32 E-value=9.4e-12 Score=107.47 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=94.5
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CCC
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SIP 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~~ 251 (359)
.++..+. ..++.+|||||||+|.++..+++. ..+++++|+ +++++.+++ .++++++.+|+.+ ..+
T Consensus 46 ~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 46 LTLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 3445554 567789999999999999999998 779999999 778877653 2389999999987 234
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
.||+|++...+ + .. +++++.+.|+| ||++++..... . +..++
T Consensus 122 ~~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~~~----------~------------------~~~~~ 163 (204)
T 3njr_A 122 LPEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAVTL----------E------------------SETLL 163 (204)
T ss_dssp CCSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEECSH----------H------------------HHHHH
T ss_pred CCCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEecCc----------c------------------cHHHH
Confidence 69999988744 2 23 79999999999 89988865421 0 35677
Q ss_pred HHHHHhcCCceeeEE
Q 043623 332 ERLFFDAGFTSYKIT 346 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~ 346 (359)
.+++++.||.+.++.
T Consensus 164 ~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 164 TQLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHHCSEEEEEE
T ss_pred HHHHHhCCCcEEEEE
Confidence 888899998877764
No 119
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.32 E-value=1.8e-12 Score=114.79 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=93.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-----CCccEEEec
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-----PSADAFLFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-----~~~D~i~~~ 259 (359)
.++.+|||||||+|.++..++...|+.+++++|+ +.+++.+++ ..+|+++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4678999999999999999999889999999999 777776653 3469999999876 43 249999987
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
.+ .+ ...+++.+.+.|+| ||.+++..... . .. ..+++.+.+++.|
T Consensus 149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~g~~-----~----~~-----------------~~~~~~~~l~~~g 193 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKK---NGLFVALKAAS-----A----EE-----------------ELNAGKKAITTLG 193 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEE---EEEEEEEECC------C----HH-----------------HHHHHHHHHHHTT
T ss_pred cc----CC--HHHHHHHHHHhcCC---CCEEEEEeCCC-----c----hH-----------------HHHHHHHHHHHcC
Confidence 73 33 45789999999999 89988763210 0 00 2356778899999
Q ss_pred CceeeEEec
Q 043623 340 FTSYKITPL 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|++.++..+
T Consensus 194 ~~~~~~~~~ 202 (240)
T 1xdz_A 194 GELENIHSF 202 (240)
T ss_dssp EEEEEEEEE
T ss_pred CeEeEEEEE
Confidence 998887653
No 120
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.32 E-value=1.5e-11 Score=107.95 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=95.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHH----hcCCCCCCceEEeCCCCCC-----C-CCccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVI----ADLPETDNLKFIAGDMNQS-----I-PSADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i----~~a~~~~rv~~~~~d~~~~-----~-~~~D~i~~~ 259 (359)
+.++.+|||+|||+|.++..+++. .|+.+++++|+ +.++ +.++...+|.++.+|+..+ . ..||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567899999999999999999986 46889999999 6553 3343357899999998762 1 249999887
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
... ++ ....++..+++.||| ||++++...........+ +.-..++..+.|+++|
T Consensus 154 ~a~---~~-~~~il~~~~~~~Lkp---GG~lvisik~~~~d~t~~-------------------~~e~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVIKARSIDVTKD-------------------PKEIYKTEVEKLENSN 207 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEE---EEEEEEEEC-------CC-------------------SSSSTTHHHHHHHHTT
T ss_pred CCC---hh-HHHHHHHHHHHhCCC---CeEEEEEEccCCcccCCC-------------------HHHHHHHHHHHHHHCC
Confidence 543 33 233345667779999 999988732211111100 0012344566778899
Q ss_pred CceeeEEecCC---cceEEEEE
Q 043623 340 FTSYKITPLLG---LRSFIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~---~~~~i~~~ 358 (359)
|++.++..+.. .+.++.++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEE
T ss_pred CEEEEEeccCCCcCceEEEEEE
Confidence 99999998843 36666665
No 121
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.32 E-value=5.8e-12 Score=106.68 Aligned_cols=132 Identities=15% Similarity=0.184 Sum_probs=91.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--CC-C-CccEEEec-
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--SI-P-SADAFLFK- 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~~-~-~~D~i~~~- 259 (359)
+.++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .++++++..|+.. .+ + .||+|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 679999999 788887764 3789999877655 12 3 49999887
Q ss_pred chhccC------ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 260 LIFHDY------DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 260 ~vlh~~------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
..+++- ..+....+|+++.+.|+| ||++++........... .. ....+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~~----------------~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----EK----------------DAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----HH----------------HHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----HH----------------HHHHHHHH
Confidence 333320 224456789999999999 99998876543222111 00 02345555
Q ss_pred HHHhcCCceeeEEec
Q 043623 334 LFFDAGFTSYKITPL 348 (359)
Q Consensus 334 ll~~aGf~~~~~~~~ 348 (359)
.+...+|.+......
T Consensus 155 ~l~~~~~~~~~~~~~ 169 (185)
T 3mti_A 155 GLDQRVFTAMLYQPL 169 (185)
T ss_dssp HSCTTTEEEEEEEES
T ss_pred hCCCceEEEEEehhh
Confidence 666677888777665
No 122
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.31 E-value=1.7e-12 Score=117.43 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=94.4
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC----C---CCceEEeCCCCCCCC--
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE----T---DNLKFIAGDMNQSIP-- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~----~---~rv~~~~~d~~~~~~-- 251 (359)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . ++++++.+|+.++++
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 4444444 667889999999999999999998 78899999999 777766543 2 589999999988554
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
.||+|++ ++++. .++|+++.+.|+| ||++++..+.. . ..+++
T Consensus 179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~----------~------------------~~~~~ 220 (275)
T 1yb2_A 179 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNF----------D------------------QSEKT 220 (275)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSH----------H------------------HHHHH
T ss_pred CccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCH----------H------------------HHHHH
Confidence 4999998 34444 3679999999999 89998876421 0 24556
Q ss_pred HHHHHhcCCceeeEEe
Q 043623 332 ERLFFDAGFTSYKITP 347 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~ 347 (359)
.+.++++||+.+++..
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 7777888988877765
No 123
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.31 E-value=8.6e-12 Score=108.36 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC--CccEEEecch
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP--SADAFLFKLI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~--~~D~i~~~~v 261 (359)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999999 778777654 3689999999987 3 43 4999998865
Q ss_pred hccCChh------HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 262 FHDYDDE------VCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 262 lh~~~d~------~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
....... ....+++.+.+.|+| ||.+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 155 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFK 155 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEE
Confidence 3211100 124689999999999 8988774
No 124
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.31 E-value=8.2e-12 Score=111.38 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=98.6
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP-- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~-- 251 (359)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+.++
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 3445544 667889999999999999999999 88999999999 778777654 4669999999998554
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
.||+|++ +.++. ..+++++.+.|+| ||++++..+.. . ..+++
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~----------~------------------~~~~~ 203 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCS----------N------------------QVMRL 203 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSH----------H------------------HHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCH----------H------------------HHHHH
Confidence 4999987 34443 3679999999999 99998875421 0 25567
Q ss_pred HHHHHhcC--CceeeEEec
Q 043623 332 ERLFFDAG--FTSYKITPL 348 (359)
Q Consensus 332 ~~ll~~aG--f~~~~~~~~ 348 (359)
.+++++.| |..+++...
T Consensus 204 ~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 204 HEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHcCCCccccEEEEE
Confidence 78888999 888777543
No 125
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.31 E-value=1.1e-11 Score=108.23 Aligned_cols=130 Identities=9% Similarity=0.017 Sum_probs=102.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCC-CC--CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQS-IP--SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~-~~--~~D~i~~~~ 260 (359)
.+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.++. .+ .||+|+..+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 35678999999999999999999988889999999 777777664 57899999999984 33 499998876
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
+ .-+....+|....+.|++ +|++++.-.. ..+.++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~l~~---~~~lIlqp~~------------------------------~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 99 M----GGRLIADILNNDIDKLQH---VKTLVLQPNN------------------------------REDDLRKWLAANDF 141 (230)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEESS------------------------------CHHHHHHHHHHTTE
T ss_pred C----chHHHHHHHHHHHHHhCc---CCEEEEECCC------------------------------ChHHHHHHHHHCCC
Confidence 4 335567899999999998 7877664320 36677999999999
Q ss_pred ceeeEEec---CCcceEEEEE
Q 043623 341 TSYKITPL---LGLRSFIEVY 358 (359)
Q Consensus 341 ~~~~~~~~---~~~~~~i~~~ 358 (359)
.+.+-.-+ +-++.+|.+.
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 99887654 3456777764
No 126
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.30 E-value=1.4e-12 Score=114.34 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC--CCC---CccEEEecchhccC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ--SIP---SADAFLFKLIFHDY 265 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~--~~~---~~D~i~~~~vlh~~ 265 (359)
.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 56789999999999999999998 569999999 788887765 6789999999965 444 499999871
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeE
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKI 345 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 345 (359)
+ ..++|+++++.|+| ||+++.. +...+.+++.++++++||+..++
T Consensus 120 -~--~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 -G--PTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp -C--CSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred -C--HHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence 2 23679999999999 8888810 00124567788888888887776
Q ss_pred Eec
Q 043623 346 TPL 348 (359)
Q Consensus 346 ~~~ 348 (359)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
No 127
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.30 E-value=8.5e-12 Score=111.52 Aligned_cols=129 Identities=15% Similarity=0.203 Sum_probs=99.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCC--CCccEEEecchhc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSI--PSADAFLFKLIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~--~~~D~i~~~~vlh 263 (359)
..++.+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ .-.++++.+|+.+.+ ..||+|+++...|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 35678999999999999999998765 9999999 777776654 112899999987633 3599999875543
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 343 (359)
....+++++.+.|+| ||++++...... +.+++.++++++||+++
T Consensus 196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred -----HHHHHHHHHHHHcCC---CCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEE
Confidence 246789999999999 899988655321 36788999999999999
Q ss_pred eEEecCCcceEEEEEC
Q 043623 344 KITPLLGLRSFIEVYL 359 (359)
Q Consensus 344 ~~~~~~~~~~~i~~~~ 359 (359)
++....+... +.++|
T Consensus 240 ~~~~~~~W~~-l~~~k 254 (254)
T 2nxc_A 240 EEAAEGEWVL-LAYGR 254 (254)
T ss_dssp EEEEETTEEE-EEEEC
T ss_pred EEeccCCeEE-EEEEC
Confidence 9887766544 34443
No 128
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.29 E-value=5.3e-12 Score=114.11 Aligned_cols=95 Identities=18% Similarity=0.298 Sum_probs=79.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCCccEEEecchhc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPSADAFLFKLIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~~D~i~~~~vlh 263 (359)
+.++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++ .++|+++.+|+.+ +..+||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 67889999999999988877767778999999999 888888764 3789999999988 5346999998754
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
.++ ..++++++++.||| ||++++.+
T Consensus 198 -~~d--~~~~l~el~r~LkP---GG~Lvv~~ 222 (298)
T 3fpf_A 198 -AEP--KRRVFRNIHRYVDT---ETRIIYRT 222 (298)
T ss_dssp -CSC--HHHHHHHHHHHCCT---TCEEEEEE
T ss_pred -ccC--HHHHHHHHHHHcCC---CcEEEEEc
Confidence 233 45789999999999 99999876
No 129
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.29 E-value=3.9e-12 Score=109.72 Aligned_cols=91 Identities=13% Similarity=0.221 Sum_probs=74.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC--CCccEEEecchhcc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI--PSADAFLFKLIFHD 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~--~~~D~i~~~~vlh~ 264 (359)
++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+.. ..||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF--- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence 368999999999999999999999999999999 777776653 245999999998832 35999997542
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.+ ...+++++.+.|+| ||.+++.
T Consensus 142 -~~--~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 142 -AS--LNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp -SS--HHHHHHHHTTSEEE---EEEEEEE
T ss_pred -CC--HHHHHHHHHHhcCC---CcEEEEE
Confidence 22 35789999999999 8988876
No 130
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.29 E-value=8e-12 Score=114.64 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC-C---CC-CccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ-S---IP-SADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~-~---~~-~~D~i 256 (359)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+ . .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999999877889999999 777766543 4789999999876 2 12 49999
Q ss_pred EecchhccCChhHH--HHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHH
Q 043623 257 LFKLIFHDYDDEVC--LKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERL 334 (359)
Q Consensus 257 ~~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~l 334 (359)
++....+..++... .+++++++++|+| ||.+++.... .... .....++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~----~~~~--------------------~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGES----IWLD--------------------LELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECC----TTTC--------------------HHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCC----cccc--------------------hHHHHHHHHH
Confidence 99876665544322 5789999999999 8888876321 0000 0146788999
Q ss_pred HHhcCCceeeEEec
Q 043623 335 FFDAGFTSYKITPL 348 (359)
Q Consensus 335 l~~aGf~~~~~~~~ 348 (359)
++++||..+++...
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887654
No 131
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.29 E-value=2.6e-12 Score=114.53 Aligned_cols=121 Identities=9% Similarity=0.028 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-----CCccEEEec
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-----PSADAFLFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-----~~~D~i~~~ 259 (359)
.++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+|+++.+|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4578999999999999999999999999999998 777776653 3469999999877 32 259999987
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcC
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAG 339 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aG 339 (359)
.+ .+ ...+++.+.+.|+| ||++++..... .. . ...++...+++.|
T Consensus 159 a~----~~--~~~ll~~~~~~Lkp---gG~l~~~~g~~----~~----~------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AV----AP--LCVLSELLLPFLEV---GGAAVAMKGPR----VE----E------------------ELAPLPPALERLG 203 (249)
T ss_dssp SS----CC--HHHHHHHHGGGEEE---EEEEEEEECSC----CH----H------------------HHTTHHHHHHHHT
T ss_pred Cc----CC--HHHHHHHHHHHcCC---CeEEEEEeCCC----cH----H------------------HHHHHHHHHHHcC
Confidence 54 22 34789999999999 99988765321 00 0 2345677788899
Q ss_pred CceeeEEec
Q 043623 340 FTSYKITPL 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|++.++.++
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 999888765
No 132
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.28 E-value=5e-12 Score=108.21 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=96.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C-CC--CccEEEe
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S-IP--SADAFLF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~-~~--~~D~i~~ 258 (359)
..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ .++++++.+|+.+ + .. .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4667899999999999999999985 6789999999 778877654 3689999999876 2 32 4999998
Q ss_pred cchhcc-------CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 259 KLIFHD-------YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 259 ~~vlh~-------~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
...+.. ...+...++++++.+.|+| ||++++........... ... ...+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~----~~~----------------~~~~~ 156 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGGDTGFE----EKE----------------KVLEF 156 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBTTTBSH----HHH----------------HHHHH
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCCCCcHH----HHH----------------HHHHH
Confidence 875511 1223456799999999999 99999887644322211 000 23344
Q ss_pred HHHHHhcCCceeeEEec
Q 043623 332 ERLFFDAGFTSYKITPL 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.+.+...+|++.....+
T Consensus 157 ~~~l~~~~~~v~~~~~~ 173 (197)
T 3eey_A 157 LKGVDQKKFIVQRTDFI 173 (197)
T ss_dssp HTTSCTTTEEEEEEEET
T ss_pred HHhCCCCcEEEEEEEec
Confidence 44455677888777665
No 133
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.27 E-value=8.2e-12 Score=117.80 Aligned_cols=107 Identities=18% Similarity=0.322 Sum_probs=85.9
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C--CCceEEeCCCCCCCC-
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T--DNLKFIAGDMNQSIP- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~--~rv~~~~~d~~~~~~- 251 (359)
.+++.++ ..+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ . .+++++.+|++++++
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4566665 44558999999999999999999999999999999 778877664 1 258889999998655
Q ss_pred -CccEEEecchhcc---CChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 252 -SADAFLFKLIFHD---YDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 252 -~~D~i~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
.||+|+++..+|+ ..+....++|+++.+.|+| ||.++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 4999999998885 3455566899999999999 89998864
No 134
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.27 E-value=2.4e-11 Score=108.85 Aligned_cols=124 Identities=12% Similarity=0.135 Sum_probs=94.4
Q ss_pred cC-CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C--CC--CccEEE
Q 043623 192 FD-GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S--IP--SADAFL 257 (359)
Q Consensus 192 ~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~--~~--~~D~i~ 257 (359)
.. ++.+|||+|||+|.++..++++.+. +++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999998776 9999999 777776653 4689999999987 3 32 499999
Q ss_pred ecchhccC------------------ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh
Q 043623 258 FKLIFHDY------------------DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT 319 (359)
Q Consensus 258 ~~~vlh~~------------------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
++-.++.. .......+++.+.+.|+| ||+++++-. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~---~-------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVHR---P-------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEEC---T--------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEEc---H--------------------
Confidence 97544322 112345799999999999 899888421 1
Q ss_pred hcCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 320 CVPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 320 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
....++.+++++.||...++.++
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEe
Confidence 04567788899999998887665
No 135
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.27 E-value=1.7e-11 Score=112.85 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=85.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCceEEeCCCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------------TDNLKFIAGDMN 247 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------------~~rv~~~~~d~~ 247 (359)
..+++.+....+++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.
T Consensus 22 ~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~ 100 (313)
T 3bgv_A 22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSS 100 (313)
T ss_dssp HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTT
T ss_pred HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEeccc
Confidence 3344443322346789999999999999999884 6779999999 777776653 237899999998
Q ss_pred C-C----C--C--CccEEEecchhccC--ChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 248 Q-S----I--P--SADAFLFKLIFHDY--DDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 248 ~-~----~--~--~~D~i~~~~vlh~~--~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+ + + + .||+|++..++|+. +.++...+|++++++|+| ||.+++..+.
T Consensus 101 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~ 157 (313)
T 3bgv_A 101 KELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPN 157 (313)
T ss_dssp TSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEEC
T ss_pred ccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCC
Confidence 7 4 3 2 49999999999987 445567899999999999 8998887653
No 136
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.26 E-value=1.5e-11 Score=104.24 Aligned_cols=119 Identities=19% Similarity=0.277 Sum_probs=93.2
Q ss_pred HHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CC-CC
Q 043623 184 IIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SI-PS 252 (359)
Q Consensus 184 l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~-~~ 252 (359)
++..+. ..++.+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+ +. +.
T Consensus 25 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 344444 5677899999999999999999987 79999999 777776653 2689999999876 22 46
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~ 332 (359)
||+|++..++++ ...+++++.+.|+| ||.+++..... . +..++.
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~~----------~------------------~~~~~~ 144 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAILL----------E------------------TKFEAM 144 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECBH----------H------------------HHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecCc----------c------------------hHHHHH
Confidence 999999988764 35789999999999 89888865421 0 356778
Q ss_pred HHHHhcCCce
Q 043623 333 RLFFDAGFTS 342 (359)
Q Consensus 333 ~ll~~aGf~~ 342 (359)
+++++.||.+
T Consensus 145 ~~l~~~g~~~ 154 (192)
T 1l3i_A 145 ECLRDLGFDV 154 (192)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHCCCce
Confidence 8999999954
No 137
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.26 E-value=1.8e-11 Score=110.84 Aligned_cols=121 Identities=15% Similarity=0.118 Sum_probs=93.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~v 261 (359)
..++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ ..+ .||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 346789999999999999999999876 8999999 778776653 4569999999998 333 4999998533
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT 341 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 341 (359)
. ...++++.+.+.|+| ||.+++.+........ ....+++.+.++++||+
T Consensus 202 ~------~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred h------hHHHHHHHHHHHCCC---CeEEEEEEeecccccc----------------------ccHHHHHHHHHHHcCCe
Confidence 1 124679999999999 8999888776422111 11567888999999999
Q ss_pred eee
Q 043623 342 SYK 344 (359)
Q Consensus 342 ~~~ 344 (359)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 766
No 138
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.25 E-value=5.1e-12 Score=118.03 Aligned_cols=109 Identities=15% Similarity=0.214 Sum_probs=88.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCCCcc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIPSAD 254 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~~~D 254 (359)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ...++++.+|+++ ....||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 45566654 33467999999999999999999999999999999 777776654 3346788999987 333599
Q ss_pred EEEecchhcc---CChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 255 AFLFKLIFHD---YDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 255 ~i~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
+|+++.++|+ ...+...++|++++++|+| ||.++++..
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 9999999986 3455567899999999999 999998765
No 139
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.24 E-value=2.9e-11 Score=106.37 Aligned_cols=130 Identities=8% Similarity=0.067 Sum_probs=101.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCC-C--CccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSI-P--SADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~-~--~~D~i~~~~ 260 (359)
.+++.+|||||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|++..+|.++.+ + .||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 35668999999999999999999998889999999 777777664 578999999999843 3 399999865
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
+ .-+....+|....+.|++ ++++++.-.. ..+.++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~L~~---~~~lIlq~~~------------------------------~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 99 M----GGTLIRTILEEGAAKLAG---VTKLILQPNI------------------------------AAWQLREWSEQNNW 141 (244)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEESS------------------------------CHHHHHHHHHHHTE
T ss_pred C----chHHHHHHHHHHHHHhCC---CCEEEEEcCC------------------------------ChHHHHHHHHHCCC
Confidence 4 445577899999999998 7777764310 36677899999999
Q ss_pred ceeeEEec---CCcceEEEEE
Q 043623 341 TSYKITPL---LGLRSFIEVY 358 (359)
Q Consensus 341 ~~~~~~~~---~~~~~~i~~~ 358 (359)
.+.+-.-+ +-++.+|.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98665433 3456666654
No 140
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.24 E-value=1.4e-11 Score=103.53 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=75.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~v 261 (359)
+.+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++ ..++++ .|..+ +.+ .||+|++..+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 35678999999999999999999999999999999 788887764 224555 66665 333 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
||++++ ....+.++.+.|+| ||.++-.+
T Consensus 125 LHlL~~--~~~al~~v~~~L~p---ggvfISfp 152 (200)
T 3fzg_A 125 LPVLKQ--QDVNILDFLQLFHT---QNFVISFP 152 (200)
T ss_dssp HHHHHH--TTCCHHHHHHTCEE---EEEEEEEE
T ss_pred HHhhhh--hHHHHHHHHHHhCC---CCEEEEeC
Confidence 999933 34557799999999 55444444
No 141
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.22 E-value=2.1e-11 Score=108.75 Aligned_cols=125 Identities=16% Similarity=0.208 Sum_probs=96.5
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC-
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~- 251 (359)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ +++
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4555555 677889999999999999999998 68889999998 777766653 3689999999987 465
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e 330 (359)
.||+|++ ++++. .++|+++.++|+| ||++++..+.. . ...+
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~----------~------------------~~~~ 206 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNI----------T------------------QVLE 206 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCH----------H------------------HHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCH----------H------------------HHHH
Confidence 3999997 34443 3679999999999 99999877421 0 1345
Q ss_pred HHHHHHhcCCceeeEEe
Q 043623 331 WERLFFDAGFTSYKITP 347 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~ 347 (359)
+.+.++++||..+++..
T Consensus 207 ~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEE
Confidence 66777788998776654
No 142
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.22 E-value=1.6e-11 Score=109.99 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchhccCChh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDE 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~ 268 (359)
+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++ .||+|++..+++++.++
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 36789999999999999999987 568999999 7788776641111388899987 654 49999999877666332
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCC----CchHHHHHHHhhhhhhhh------cCCcccCHHHHHHHHHhc
Q 043623 269 VCLKLLKNCREAVASSDGREKVIIVDIVVNEKKD----KPEITEAKLLYDALMMTC------VPGIERSEKEWERLFFDA 338 (359)
Q Consensus 269 ~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~g~~~t~~e~~~ll~~a 338 (359)
..++|+++++.|+| ||++++..+....... ...+.............. .....++.+++.++ +
T Consensus 131 -~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---a 203 (260)
T 2avn_A 131 -KDKAFSEIRRVLVP---DGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---E 203 (260)
T ss_dssp -HHHHHHHHHHHEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---T
T ss_pred -HHHHHHHHHHHcCC---CeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---c
Confidence 56889999999999 8999887664321000 000000000000000000 00124688888888 9
Q ss_pred CCceeeEEecCC
Q 043623 339 GFTSYKITPLLG 350 (359)
Q Consensus 339 Gf~~~~~~~~~~ 350 (359)
||+++++....+
T Consensus 204 Gf~~~~~~~~~~ 215 (260)
T 2avn_A 204 GFETVDIRGIGV 215 (260)
T ss_dssp TEEEEEEEEECS
T ss_pred CceEEEEECCCC
Confidence 999998887643
No 143
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.22 E-value=1.3e-11 Score=115.34 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=85.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC-C
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP-S 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~ 252 (359)
..+++.+. ..++.+|||||||+|.++..++++ +..+++++|..++++.+++ .++|+++.+|+.+ +.+ .
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 34555554 456789999999999999999885 5569999999556655442 3789999999998 555 4
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
||+|++..+++++..+.....+.++++.|+| ||.+++.
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 9999999999888877777889999999999 8888754
No 144
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.21 E-value=1.8e-11 Score=102.79 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=84.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CC---C--CccEEEecchh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SI---P--SADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~---~--~~D~i~~~~vl 262 (359)
..++.+|||||||. +.+|. +.+++.+++ ..+++++.+|+.+ +. + .||+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999996 23787 778877764 3469999999987 44 4 39999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 263 HDY-DDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 263 h~~-~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
|++ ++. .++|++++++||| ||++++.++....... ....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVDN-------------------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSCS-------------------SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccccccc-------------------ccccCCHHHHHHHHHHCCC
Confidence 998 664 5789999999999 9999997664322110 1123578999999999999
No 145
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.20 E-value=1.9e-11 Score=118.79 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=86.2
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC-C
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP-S 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~ 252 (359)
..+++.+. ..++.+|||||||+|.++..+++ .+..+++++|+.++++.+++ .++|+++.+|+.+ +.+ .
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 45555554 45678999999999999998887 57789999999657665543 3789999999998 665 4
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
||+|++..++|++.++.....+.++++.|+| ||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 9999999888888877778889999999999 888874
No 146
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=5.7e-11 Score=99.82 Aligned_cols=120 Identities=14% Similarity=0.193 Sum_probs=92.6
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC--Cc
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--SA 253 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--~~ 253 (359)
.++..+. ..++.+|||+|||+|.++..+++ +..+++++|. +.+++.+++ .++++++.+|+.++++ .|
T Consensus 26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 3444444 55678999999999999999998 7889999999 778777654 2689999999887443 59
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|+|++..+ .....+++++++. | ||.+++..... . +..++.+
T Consensus 102 D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~----------~------------------~~~~~~~ 142 (183)
T 2yxd_A 102 NKAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVL----------E------------------NAAKIIN 142 (183)
T ss_dssp SEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCH----------H------------------HHHHHHH
T ss_pred cEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEeccc----------c------------------cHHHHHH
Confidence 99999987 2245778998888 8 89998876421 0 2566788
Q ss_pred HHHhcCCceeeE
Q 043623 334 LFFDAGFTSYKI 345 (359)
Q Consensus 334 ll~~aGf~~~~~ 345 (359)
+++++||.+..+
T Consensus 143 ~l~~~g~~~~~~ 154 (183)
T 2yxd_A 143 EFESRGYNVDAV 154 (183)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEE
Confidence 999999876655
No 147
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.19 E-value=5e-11 Score=113.70 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=85.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC-------CC--------CCCceEEeCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL-------PE--------TDNLKFIAGD 245 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a-------~~--------~~rv~~~~~d 245 (359)
..++..+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+|+++.+|
T Consensus 232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 34455554 56788999999999999999999888778999999 6666555 32 2689999886
Q ss_pred CC-CC--C----CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 246 MN-QS--I----PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 246 ~~-~~--~----~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
.+ .+ + ..||+|+++++++. ++....|+++.+.|+| ||++++.+.+.+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 54 32 2 35999999877732 3456789999999999 99999998776654
No 148
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.19 E-value=4.2e-11 Score=104.08 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC--CccEEEecch
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP--SADAFLFKLI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~--~~D~i~~~~v 261 (359)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+|+++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457999999999999999999999999999999 778776653 3679999999886 3 43 4999887543
Q ss_pred hccCChh-------HHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 262 FHDYDDE-------VCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 262 lh~~~d~-------~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
.. |... ....+|+.+.+.|+| ||.+++..
T Consensus 118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 21 2211 024789999999999 89888753
No 149
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.17 E-value=4.8e-11 Score=107.89 Aligned_cols=125 Identities=15% Similarity=0.209 Sum_probs=95.4
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC--
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP-- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~-- 251 (359)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+.++
T Consensus 103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 4555555 667889999999999999999999 68899999998 777776653 2689999999987544
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~ 331 (359)
.||+|++. .++. ..+|+++.++|+| ||++++..+... ...++
T Consensus 181 ~~D~V~~~-----~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~----------------------------~~~~~ 222 (277)
T 1o54_A 181 DVDALFLD-----VPDP--WNYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQET 222 (277)
T ss_dssp SEEEEEEC-----CSCG--GGTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred ccCEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence 49999983 3443 3679999999999 899988764210 13455
Q ss_pred HHHHHhcCCceeeEEe
Q 043623 332 ERLFFDAGFTSYKITP 347 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~ 347 (359)
.+.|++.||..+++..
T Consensus 223 ~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 223 LKKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHHSSEEEEEEEC
T ss_pred HHHHHHCCCceeEEEE
Confidence 6677778888776654
No 150
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.17 E-value=1.9e-11 Score=106.71 Aligned_cols=98 Identities=12% Similarity=0.084 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C--CC--CccEEEecc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S--IP--SADAFLFKL 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~--~~--~~D~i~~~~ 260 (359)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+|+++.+|+.+ + ++ .+|.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 467999999999999999999999999999999 777776543 4579999999766 2 44 499999875
Q ss_pred hhccCChhHH------HHHHHHHHHhcCCCCCCceEEEEe
Q 043623 261 IFHDYDDEVC------LKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 261 vlh~~~d~~~------~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
.......... ..+++.+++.|+| ||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 4321111111 1489999999999 88887754
No 151
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.17 E-value=1.3e-10 Score=105.06 Aligned_cols=142 Identities=11% Similarity=0.114 Sum_probs=94.7
Q ss_pred HHHHhcccccC-CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhc-CCCCCCceEEe-CCCCC----CCC--C
Q 043623 183 LIIKDCKHIFD-GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIAD-LPETDNLKFIA-GDMNQ----SIP--S 252 (359)
Q Consensus 183 ~l~~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~-a~~~~rv~~~~-~d~~~----~~~--~ 252 (359)
.++..+. .. ++.+|||||||||.++..+++. +..+++++|+ +.|++. ++...++.... .|+.. .+| .
T Consensus 75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 4455554 33 4679999999999999998886 4458999999 777766 33345654433 23322 123 3
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCc-------c
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGI-------E 325 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~ 325 (359)
||++++..++|++ ..+|+++++.|+| ||+++++- .|...... ... ..+|. .
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~~------~~~------~~~G~vrd~~~~~ 209 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVD---GGQVVALV--KPQFEAGR------EQI------GKNGIVRESSIHE 209 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CGGGTSCG------GGC------C-CCCCCCHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEE--CcccccCh------hhc------CCCCccCCHHHHH
Confidence 9999998888754 4679999999999 99998861 11111100 000 00121 2
Q ss_pred cCHHHHHHHHHhcCCceeeEEecC
Q 043623 326 RSEKEWERLFFDAGFTSYKITPLL 349 (359)
Q Consensus 326 ~t~~e~~~ll~~aGf~~~~~~~~~ 349 (359)
+..+++.++++++||++..+...+
T Consensus 210 ~~~~~v~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 210 KVLETVTAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECS
T ss_pred HHHHHHHHHHHHCCCEEEEEEECC
Confidence 367899999999999998887653
No 152
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.16 E-value=4.7e-11 Score=104.20 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=79.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-----CCcc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-----PSAD 254 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-----~~~D 254 (359)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ + + ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 44678999999999999999999998 789999999 777766553 4679999999876 1 1 3499
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
+|++... ......+++++.+.|+| ||.+++.+....
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9987654 23346789999999999 897777666543
No 153
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.16 E-value=1.6e-10 Score=98.99 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=78.4
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC--CCeEEEeechHHHhcCCCCCCceEEeCCCCC-C----------
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP--SIKCSVLELPHVIADLPETDNLKFIAGDMNQ-S---------- 249 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~---------- 249 (359)
++.+.+. .+.++.+|||||||+|.++..+++++| +.+++++|+.++. ..++++++.+|+.+ +
T Consensus 12 ~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 12 ELDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp HHHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC------
T ss_pred HHHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhcccccc
Confidence 3444443 145678999999999999999999998 6899999995531 24679999999987 4
Q ss_pred ---------------CC--CccEEEecchhccCC----hhH-----HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 250 ---------------IP--SADAFLFKLIFHDYD----DEV-----CLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 250 ---------------~~--~~D~i~~~~vlh~~~----d~~-----~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
++ .||+|++...+|... +.. ..++|+.+++.|+| ||++++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 34 499999988776532 211 12479999999999 89887743
No 154
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.16 E-value=1.6e-10 Score=96.33 Aligned_cols=106 Identities=13% Similarity=0.224 Sum_probs=82.6
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCceEEeCCCCC-C--------CC-
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-S--------IP- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~--------~~- 251 (359)
.+++.+. ...++.+|||+|||+|.++..+++.+ |+.+++++|+.++++ ..+++++.+|+.+ + .+
T Consensus 12 ~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence 3444433 13567899999999999999999984 778999999955332 2789999999988 4 54
Q ss_pred -CccEEEecchhccCChhH---------HHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 252 -SADAFLFKLIFHDYDDEV---------CLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~---------~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
.||+|++..++|...+.. ..++++++.+.|+| ||.+++....
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~ 138 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQ 138 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence 499999999888765431 15789999999999 8998886653
No 155
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.15 E-value=1.2e-10 Score=102.80 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCCC--C---C--CccEEEecc
Q 043623 194 GLSSLVEVGGGTGSFARIISEA----FPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQS--I---P--SADAFLFKL 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~~--~---~--~~D~i~~~~ 260 (359)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++.+|+.+. + . .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4579999999999999999997 78899999999 778887764 57899999999873 1 2 499998866
Q ss_pred hhccCChhHHHHHHHHHHH-hcCCCCCCceEEEEee
Q 043623 261 IFHDYDDEVCLKLLKNCRE-AVASSDGREKVIIVDI 295 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~-~L~p~~~gG~lli~e~ 295 (359)
. |. ...++|+++.+ .|+| ||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 5 42 34578999997 9999 999988776
No 156
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.14 E-value=6.4e-11 Score=104.99 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~D 254 (359)
.++.+|||||||+|..+..+++..| +.+++++|+ +++++.+++ .++|+++.+|+.+ + . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4568999999999999999999886 789999999 677776654 4689999999876 2 2 4599
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
+|++... ......+|+++.+.|+| ||.|++.+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence 9988653 23356789999999999 8888887766544
No 157
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.14 E-value=7.8e-11 Score=102.14 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=80.6
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC---
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--- 251 (359)
.++..+. ..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ .++++++.+|+..+.+
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 3444444 5677899999999999999999987 6689999999 777777654 3579999999876443
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.||+|++..++|++++ ++.+.|+| ||++++...
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred CeeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 4999999999998773 67888999 899888754
No 158
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.14 E-value=8.3e-11 Score=104.65 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC---CC-------C----------------------
Q 043623 194 GLSSLVEVGGGTGSFARIISEA--FPSIKCSVLEL-PHVIADLPE---TD-------N---------------------- 238 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~i~~a~~---~~-------r---------------------- 238 (359)
+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4679999999999999999998 77889999999 788877663 22 2
Q ss_pred ---ce-------------EEeCCCCCCC-------C-CccEEEecchhccCCh-------hHHHHHHHHHHHhcCCCCCC
Q 043623 239 ---LK-------------FIAGDMNQSI-------P-SADAFLFKLIFHDYDD-------EVCLKLLKNCREAVASSDGR 287 (359)
Q Consensus 239 ---v~-------------~~~~d~~~~~-------~-~~D~i~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~g 287 (359)
|+ ++.+|++++. . .||+|+++..++...+ +....+++++.+.|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 77 9999999843 3 5999999877665443 5566899999999999 9
Q ss_pred ceEEEEeee
Q 043623 288 EKVIIVDIV 296 (359)
Q Consensus 288 G~lli~e~~ 296 (359)
|+++++...
T Consensus 208 G~l~~~~~~ 216 (250)
T 1o9g_A 208 AVIAVTDRS 216 (250)
T ss_dssp CEEEEEESS
T ss_pred cEEEEeCcc
Confidence 999985544
No 159
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.14 E-value=8.5e-11 Score=101.53 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=79.6
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---CC
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---PS 252 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~~ 252 (359)
.++..+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|..+.. ..
T Consensus 68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 3444444 567889999999999999999998 579999999 777776653 357999999998832 24
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
||+|++..++|++++ .+.+.|+| ||++++.-..
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhccc---CcEEEEEEcC
Confidence 999999999998886 36788999 8988886543
No 160
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.13 E-value=4.3e-11 Score=105.38 Aligned_cols=99 Identities=12% Similarity=0.230 Sum_probs=79.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCC-----CCccEEEe
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSI-----PSADAFLF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~-----~~~D~i~~ 258 (359)
..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++|+++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34678999999999999999999889999999999 778777654 368999999998732 24999997
Q ss_pred cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
... ......+++.+.+.|+| ||.+++.+....
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~~ 180 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLYH 180 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTGG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCcC
Confidence 643 22345789999999999 888877555443
No 161
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.13 E-value=1.5e-10 Score=98.32 Aligned_cols=100 Identities=8% Similarity=0.006 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--C--CCccEEEecc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--I--PSADAFLFKL 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~--~~~D~i~~~~ 260 (359)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ . . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 45689999999999999988774 5568999999 788877764 3689999999887 2 3 3599999988
Q ss_pred hhccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeeec
Q 043623 261 IFHDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIVV 297 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~~ 297 (359)
.+|+. .+...++++.+.+ .|+| ||.+++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTRE---GTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence 76643 3456788999999 9999 89888866543
No 162
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.12 E-value=5e-11 Score=106.05 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=79.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CC---CCccEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SI---PSADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~---~~~D~i 256 (359)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ .. ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999998 889999999 777776653 4689999999865 22 159999
Q ss_pred EecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 257 LFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 257 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
++.. +......+|+++.+.|+| ||.|++.+....
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 9854 233456789999999999 898887666543
No 163
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.12 E-value=1.5e-10 Score=107.87 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=75.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v 261 (359)
..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++|+++.+|+.+ +++ .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 566789999999999999999987 4458999999557766653 3789999999998 665 4999998774
Q ss_pred hccCC-hhHHHHHHHHHHHhcCCCCCCceEE
Q 043623 262 FHDYD-DEVCLKLLKNCREAVASSDGREKVI 291 (359)
Q Consensus 262 lh~~~-d~~~~~iL~~~~~~L~p~~~gG~ll 291 (359)
.+.+. ......+|+++.+.|+| ||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 33222 22345789999999999 88876
No 164
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.11 E-value=7.2e-11 Score=110.42 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=76.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v 261 (359)
..++.+|||||||+|.++..++++ +..+++++|..++++.+++ .++|+++.+|+.+ +++ .||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 346789999999999999999987 5669999999667666553 5679999999998 666 4999999765
Q ss_pred hccCC-hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 262 FHDYD-DEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 262 lh~~~-d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
.|.+. ......+++.+.+.|+| ||.++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEcc
Confidence 44432 22345789999999999 888763
No 165
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.11 E-value=5.4e-11 Score=103.85 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=78.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC---CC------CCc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ---SI------PSA 253 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~---~~------~~~ 253 (359)
..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++ .++|+++.+|+.+ .. ..|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34678999999999999999999864 789999999 778877664 4679999999744 12 359
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
|+|++....+++.+ ..+++..+ +.|+| ||.+++.+...
T Consensus 136 D~V~~d~~~~~~~~--~~~~~~~~-~~Lkp---gG~lv~~~~~~ 173 (221)
T 3u81_A 136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRK---GTVLLADNVIV 173 (221)
T ss_dssp SEEEECSCGGGHHH--HHHHHHHT-TCCCT---TCEEEESCCCC
T ss_pred EEEEEcCCcccchH--HHHHHHhc-cccCC---CeEEEEeCCCC
Confidence 99999887776644 34667777 99999 88887766553
No 166
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.10 E-value=1.7e-10 Score=109.00 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC--CccEEEecchhcc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHD 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~ 264 (359)
++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ ..+ .||+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999997 569999999 778877664 3358999999998 443 5999999999987
Q ss_pred ---CChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 265 ---YDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 265 ---~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
...+...++++++++.|+| ||.++|+.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3456677899999999999 89988864
No 167
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.10 E-value=1.6e-10 Score=101.90 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCceEEeCCCCC--C--CC--Cc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP------------ETDNLKFIAGDMNQ--S--IP--SA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~------------~~~rv~~~~~d~~~--~--~~--~~ 253 (359)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ...+|+++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4557899999999999999999999999999999 77765432 24689999999986 3 33 49
Q ss_pred cEEEecchhccCChh---H----HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 254 DAFLFKLIFHDYDDE---V----CLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 254 D~i~~~~vlh~~~d~---~----~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
|.|++...-. |... . ...+|+++.++|+| ||.+++..
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 9998653221 1110 0 13689999999999 89888753
No 168
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.10 E-value=1.3e-10 Score=104.11 Aligned_cols=99 Identities=9% Similarity=0.256 Sum_probs=76.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCCC--------CC-
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQS--------IP- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~~--------~~- 251 (359)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45667999999999999999999999999999999 777765543 23699999999874 22
Q ss_pred -CccEEEecchhcc----------------CChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 252 -SADAFLFKLIFHD----------------YDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 252 -~~D~i~~~~vlh~----------------~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|+++-.++. ........+++.+.+.|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 4999999733322 1222256789999999999 8998875
No 169
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.09 E-value=1.1e-10 Score=106.88 Aligned_cols=98 Identities=17% Similarity=0.295 Sum_probs=77.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC---CCC--CccEEEecchh
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ---SIP--SADAFLFKLIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~---~~~--~~D~i~~~~vl 262 (359)
..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34999999999999999999999999999999 788877653 4789999999876 333 49999987554
Q ss_pred ccCChhH--HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 263 HDYDDEV--CLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 263 h~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
+...... ..++++.++++|+| ||.+++.-.
T Consensus 170 ~~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 4322221 15789999999999 887766543
No 170
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.08 E-value=1.7e-10 Score=103.63 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCC-CCC--CccEEEecchhccCCh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-SIP--SADAFLFKLIFHDYDD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d 267 (359)
.++.+|||||||+|.++..+++..|+.+++++|+ +.+++.+++ ..++.++.+|+.+ +++ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4678999999999999999999988889999999 778877765 5779999999987 554 49999987653
Q ss_pred hHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 268 EVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 268 ~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
..++++.++|+| ||++++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 248899999999 99999987654
No 171
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.08 E-value=1.1e-10 Score=110.17 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=79.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC-CccEEEecchh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vl 262 (359)
..++.+|||||||+|.++..++++.. .+++++|..++++.+++ .++|+++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 45678999999999999999999733 48999998766665543 4779999999988 555 59999997766
Q ss_pred ccCChh-HHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 263 HDYDDE-VCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 263 h~~~d~-~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
|....+ ....+++.+.+.|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 665432 355789999999999 8888765543
No 172
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.08 E-value=2.1e-10 Score=100.55 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=78.8
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCCCCC---Ccc
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQSIP---SAD 254 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~~~~---~~D 254 (359)
.++..+. ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 4444444 5677899999999999999999986 68999999 777776654 2289999999987332 499
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
+|++..++|++.+ ++.+.|+| ||++++...
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~ 166 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIG 166 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence 9999999998874 47788999 899888754
No 173
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.08 E-value=1.5e-10 Score=101.73 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=80.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C---CCccEEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I---PSADAFL 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~---~~~D~i~ 257 (359)
..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++|+++.+|+.+ + . ..||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34678999999999999999999999999999999 777776653 3689999999887 2 1 3599999
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
+....+ ....+|+++.+.|+| ||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence 987654 245789999999999 89888865543
No 174
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.07 E-value=2.5e-10 Score=103.65 Aligned_cols=94 Identities=12% Similarity=0.203 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCC-Cc---cEEEec--
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIP-SA---DAFLFK-- 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~-~~---D~i~~~-- 259 (359)
+..+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++ .++++++.+|++++.+ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 5679999999999999999999 9999999999 788877653 3479999999998543 48 999997
Q ss_pred ----------chhccCChh------HHHHHHHHHH-HhcCCCCCCceEEE
Q 043623 260 ----------LIFHDYDDE------VCLKLLKNCR-EAVASSDGREKVII 292 (359)
Q Consensus 260 ----------~vlh~~~d~------~~~~iL~~~~-~~L~p~~~gG~lli 292 (359)
.+. +.+.. +...+++++. +.|+| ||.+++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 222 22211 1126899999 99999 888776
No 175
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.07 E-value=9e-11 Score=102.48 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~D 254 (359)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ + . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4568999999999999999999988 789999999 777776653 4679999999865 2 1 4599
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
+|++... ......+++++.+.|+| ||.+++.+....
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9996542 33456789999999999 898888776654
No 176
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.07 E-value=1.6e-10 Score=101.80 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=79.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC---
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP--- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~--- 251 (359)
..++..+. ..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 34455444 56778999999999999999999988 79999998 777776653 3469999999854544
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.||+|++..+++++.+ ++.+.|+| ||++++.-.
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 3999999999988764 56788999 888887654
No 177
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.07 E-value=5.8e-10 Score=101.03 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=72.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec--hHHHhcCCC------------C----CCceEEeCCCCC---C-
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL--PHVIADLPE------------T----DNLKFIAGDMNQ---S- 249 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~i~~a~~------------~----~rv~~~~~d~~~---~- 249 (359)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . ++|+++..|..+ .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3456899999999999999888863 348999999 466654432 1 478888655433 1
Q ss_pred -----CCCccEEEecchhccCChhHHHHHHHHHHHhcC---CCCCCceEEEE
Q 043623 250 -----IPSADAFLFKLIFHDYDDEVCLKLLKNCREAVA---SSDGREKVIIV 293 (359)
Q Consensus 250 -----~~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~---p~~~gG~lli~ 293 (359)
...||+|+++.++|+.++ ...+++.+.++|+ | ++||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 135999999999988655 4578999999999 7 347887664
No 178
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.07 E-value=4.3e-10 Score=98.25 Aligned_cols=94 Identities=6% Similarity=0.100 Sum_probs=74.9
Q ss_pred CeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------C-CCceEEeCCCCC---CC--CCccEEEecc
Q 043623 196 SSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------T-DNLKFIAGDMNQ---SI--PSADAFLFKL 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~-~rv~~~~~d~~~---~~--~~~D~i~~~~ 260 (359)
.+|||||||+|..+..+++..| +.+++++|+ +++++.+++ . ++|+++.+|+.+ .. ..||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 3999999999999999999875 789999999 777776653 3 689999999876 23 2499998865
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
.. .....+++.+.+.|+| ||.+++.+..+
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~ 166 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLADALL 166 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence 32 2245689999999999 88887765554
No 179
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.06 E-value=3e-10 Score=99.80 Aligned_cols=131 Identities=8% Similarity=0.019 Sum_probs=96.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~ 264 (359)
.++.+|||||||+|-++..+....|..+++++|+ +.+++.++. ..+.++...|... +.+ .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 778776654 5567889999988 333 4999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceee
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYK 344 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 344 (359)
+.++.....+ ++.++|+| +| ++|.=+...-....+-+. .. -.+.|++.+.+.|..+.+
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~-vvVSfp~ksl~Grs~gm~---~~--------------Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PN-IVVTFPTKSLGQRSKGMF---QN--------------YSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SE-EEEEEECC-------CHH---HH--------------HHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhHHHH-HHHHHhCC---CC-EEEeccchhhcCCCcchh---hH--------------HHHHHHHHHHhcCCceee
Confidence 9888765666 89999999 44 555444321111111010 01 267889999999985544
Q ss_pred E
Q 043623 345 I 345 (359)
Q Consensus 345 ~ 345 (359)
+
T Consensus 269 ~ 269 (281)
T 3lcv_B 269 L 269 (281)
T ss_dssp E
T ss_pred e
Confidence 3
No 180
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.06 E-value=3.8e-11 Score=105.73 Aligned_cols=146 Identities=11% Similarity=0.062 Sum_probs=85.7
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCC--------ceEEe-CCCCCCCC
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDN--------LKFIA-GDMNQSIP 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~r--------v~~~~-~d~~~~~~ 251 (359)
.++..+. ....+.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+ +.+.. .|+..+.
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 103 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR- 103 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC-
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC-
Confidence 3444444 12345799999999999999999873 249999999 677665432 233 33322 2222211
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhh-hhhhhcCCcccCHHH
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDA-LMMTCVPGIERSEKE 330 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~t~~e 330 (359)
+|.+.+..++.++ ..+|++++++|+| ||++++.- .+..... ...... -..........+.++
T Consensus 104 -~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~~e~~------~~~~~~~G~~~d~~~~~~~~~~ 166 (232)
T 3opn_A 104 -PSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQFEAG------REQVGKNGIIRDPKVHQMTIEK 166 (232)
T ss_dssp -CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHHHHSC------HHHHC-CCCCCCHHHHHHHHHH
T ss_pred -CCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--CcccccC------HHHhCcCCeecCcchhHHHHHH
Confidence 3444444444333 4679999999999 99998842 1000000 000000 000000011237889
Q ss_pred HHHHHHhcCCceeeEEec
Q 043623 331 WERLFFDAGFTSYKITPL 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
+.++++++||++..+...
T Consensus 167 l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 167 VLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHHTEEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEEc
Confidence 999999999999888654
No 181
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.06 E-value=1.3e-10 Score=108.77 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCC------chHHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CC--------CCccE
Q 043623 193 DGLSSLVEVGGG------TGSFARIISEA-FPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SI--------PSADA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~--------~~~D~ 255 (359)
.++.+||||||| +|..+..++++ +|+.+++++|+ +.+.. ..++|+|+.+|+.+ ++ ..||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccE
Confidence 456899999999 77777777765 59999999999 55532 36799999999998 43 34999
Q ss_pred EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
|++.. .|++.+ ..+.|++++++||| ||.+++.|..
T Consensus 292 Visdg-sH~~~d--~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDG-SHINAH--VRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEECS-CCCHHH--HHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEECC-cccchh--HHHHHHHHHHhcCC---CeEEEEEecc
Confidence 99864 466544 46889999999999 8988888765
No 182
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.06 E-value=1.8e-10 Score=107.14 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=78.2
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------CCCceEEe
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE-----------------TDNLKFIA 243 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~-----------------~~rv~~~~ 243 (359)
.++..++ ..++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++ .++++++.
T Consensus 96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 3455554 667889999999999999999998 58889999999 777766543 26899999
Q ss_pred CCCCCC---CC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 244 GDMNQS---IP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 244 ~d~~~~---~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+|+.+. ++ .||+|++.. +++. .+++++.+.|+| ||++++....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~Lkp---gG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKH---GGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEE---EEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCC---CcEEEEEeCC
Confidence 999872 33 399999843 2221 368999999999 9999877653
No 183
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.05 E-value=4.7e-10 Score=103.99 Aligned_cols=97 Identities=12% Similarity=0.191 Sum_probs=75.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v 261 (359)
..++.+|||||||+|.++..++++ +..+++++|..++++.+++ .++|+++.+|+.+ +.+ .||+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345689999999999999998886 4458999999666665543 4689999999998 565 4999998865
Q ss_pred hccCC-hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 262 FHDYD-DEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 262 lh~~~-d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
.+.+. ......++..+.+.|+| ||.++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEEE
Confidence 44432 22245789999999999 888763
No 184
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.05 E-value=2.3e-10 Score=104.28 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCC--C--CCccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQS--I--PSADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~--~--~~~D~i 256 (359)
+++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+. . ..||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999999877889999999 778776543 45899999998872 2 249999
Q ss_pred EecchhccCChhHH--HHHHHHHHHhcCCCCCCceEEEEe
Q 043623 257 LFKLIFHDYDDEVC--LKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 257 ~~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
++...-+.-+.... ..+++.++++|+| ||.+++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~Lkp---gG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCC---CCEEEEec
Confidence 99654433222222 5789999999999 88777754
No 185
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.05 E-value=3e-10 Score=104.79 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=80.3
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC---C
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI---P 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~---~ 251 (359)
.++..+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +++++.+++ ..+++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 4455544 56788999999999999999999887 478999999 777776653 356999999998732 2
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.||+|++..++|+++ +++.+.|+| ||++++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence 499999999999877 356778999 899888643
No 186
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.04 E-value=1.8e-10 Score=102.28 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=72.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC--------------CCCCceEEeCCCCCC----CC-
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP--------------ETDNLKFIAGDMNQS----IP- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~--------------~~~rv~~~~~d~~~~----~~- 251 (359)
.+++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ...+++++.+|+.+. ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34668999999999999999999999999999998 66765442 125799999999862 32
Q ss_pred -CccEEEecchhccCChhHH-----------HHHHHHHHHhcCCCCCCceEEEE
Q 043623 252 -SADAFLFKLIFHDYDDEVC-----------LKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~-----------~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.+|.|++. ++++.. ..+++++.+.|+| ||.+++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 37777643 233211 3789999999999 8988884
No 187
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.04 E-value=4.2e-10 Score=99.34 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=77.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C---------
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I--------- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~--------- 250 (359)
..++.+|||||||+|..+..+++..| ..+++++|. +.+++.+++ .++|+++.+|+.+ + .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34678999999999999999999987 689999999 777766653 3569999999765 2 1
Q ss_pred --------CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 251 --------PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 251 --------~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
..||+|++.... +....+++++.+.|+| ||.+++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKP---GGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence 459999987543 3345789999999999 88888866544
No 188
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.03 E-value=6.9e-10 Score=102.24 Aligned_cols=103 Identities=8% Similarity=0.085 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C-CC-CccEEEec-
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S-IP-SADAFLFK- 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~-~~-~~D~i~~~- 259 (359)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 479999999 777766653 3479999999987 3 23 59999983
Q ss_pred -----chhcc-------CChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 260 -----LIFHD-------YDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 260 -----~vlh~-------~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
.+++. |+.++. .++|+++.+.||| ||++++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence 23432 222221 4889999999999 89888766543
No 189
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.02 E-value=1.3e-10 Score=96.58 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCC-------CCccEEEecc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSI-------PSADAFLFKL 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~-------~~~D~i~~~~ 260 (359)
++.+|||+|||+|.++..+++..++ ++++|+ +.+++.+++ ..+++++.+|+.+.. ..||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5689999999999999999998765 999999 778877664 228999999987621 1599999998
Q ss_pred hhccCChhHHHHHHHHHH--HhcCCCCCCceEEEEeee
Q 043623 261 IFHDYDDEVCLKLLKNCR--EAVASSDGREKVIIVDIV 296 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~--~~L~p~~~gG~lli~e~~ 296 (359)
.+| ...+ ++++.+. +.|+| ||.+++....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPK 149 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEET
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCC
Confidence 876 2333 3355555 99999 8888776554
No 190
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.02 E-value=1.7e-10 Score=99.71 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=76.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--CC-CCccEEEecc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--SI-PSADAFLFKL 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~~-~~~D~i~~~~ 260 (359)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++|+++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3568999999999999999999988 789999999 778777653 3579999999865 32 2299998873
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
. ......+++++.+.|+| ||.+++.+...
T Consensus 135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 2 12345789999999999 88887766544
No 191
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.00 E-value=1.1e-09 Score=98.27 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=72.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CceEE--eCCCCC-CCCCccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE--TD------NLKFI--AGDMNQ-SIPSADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~--~~------rv~~~--~~d~~~-~~~~~D~i~~~~ 260 (359)
+.++.+|||||||+|.++..+++. .+++++|+.+++..+++ .. +|.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 566789999999999999999887 58999999555433322 12 68999 999987 533599999986
Q ss_pred hhccCChh----H-HHHHHHHHHHhcCCCCCCc--eEEEEee
Q 043623 261 IFHDYDDE----V-CLKLLKNCREAVASSDGRE--KVIIVDI 295 (359)
Q Consensus 261 vlh~~~d~----~-~~~iL~~~~~~L~p~~~gG--~lli~e~ 295 (359)
. +..++. . ...+|+.+.++|+| || .+++..+
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~ 186 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVL 186 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEES
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeC
Confidence 6 443322 1 22479999999999 89 7777444
No 192
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.00 E-value=1.8e-09 Score=101.03 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=79.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC--CCccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI--PSADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~--~~~D~i~~~~ 260 (359)
+.++.+|||+|||+|.+++.++... |+.+++++|+ +.+++.+++ .++|+++.+|+.+ +. +.||+|+++-
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np 280 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP 280 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence 5677899999999999999999987 8899999999 788877664 2389999999998 43 3589999965
Q ss_pred hhccCC--hhH----HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 261 IFHDYD--DEV----CLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 261 vlh~~~--d~~----~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.++... ... -..+++.+++.|+| ||+++++..
T Consensus 281 Pyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t~ 318 (354)
T 3tma_A 281 PHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLTL 318 (354)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEES
T ss_pred CCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 443211 111 25789999999999 999988643
No 193
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.99 E-value=3.5e-10 Score=95.52 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-----CCCccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-----IPSADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-----~~~~D~i~ 257 (359)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+ + ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4568999999999999999888 45679999999 778877664 2579999999877 2 23599999
Q ss_pred ecchhccCChhHHHHHHHHH--HHhcCCCCCCceEEEEeeec
Q 043623 258 FKLIFHDYDDEVCLKLLKNC--REAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~--~~~L~p~~~gG~lli~e~~~ 297 (359)
+...+|....+ .+++.+ .+.|+| ||.+++.....
T Consensus 122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETDKT 157 (187)
T ss_dssp ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeCCc
Confidence 98876643333 445555 788999 88887765543
No 194
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.99 E-value=7.6e-10 Score=94.39 Aligned_cols=104 Identities=11% Similarity=0.283 Sum_probs=76.1
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCCCC-----------
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQSI----------- 250 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~~~----------- 250 (359)
.++.+.+. .++++.+|||+|||+|.++..++++ ..+++++|+.++ ....+++++.+|+.+..
T Consensus 14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 34555554 2467889999999999999999987 679999999543 12468999999998731
Q ss_pred ---CCccEEEecchhccC---------ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 251 ---PSADAFLFKLIFHDY---------DDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 251 ---~~~D~i~~~~vlh~~---------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
..||+|++....... ..+....+|+.+.+.|+| ||++++..+
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~ 140 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF 140 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence 369999986432111 112235789999999999 898876544
No 195
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.99 E-value=1.7e-10 Score=96.87 Aligned_cols=98 Identities=8% Similarity=0.100 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-CCccEEEecc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-PSADAFLFKL 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-~~~D~i~~~~ 260 (359)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ + . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45689999999999999999987 6679999999 778877653 2579999999876 2 2 2499999987
Q ss_pred hhccCChhHHHHHHHHHH--HhcCCCCCCceEEEEeeec
Q 043623 261 IFHDYDDEVCLKLLKNCR--EAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~--~~L~p~~~gG~lli~e~~~ 297 (359)
.+|. ....++++.+. +.|+| ||.+++.....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDKT 141 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECCc
Confidence 6543 22345566666 88999 88887765543
No 196
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.99 E-value=1.5e-09 Score=92.40 Aligned_cols=97 Identities=15% Similarity=0.282 Sum_probs=73.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC---------CeEEEeechHHHhcCCCCCCceEE-eCCCCC-C--------CC-
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS---------IKCSVLELPHVIADLPETDNLKFI-AGDMNQ-S--------IP- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~i~~a~~~~rv~~~-~~d~~~-~--------~~- 251 (359)
+.++.+|||||||+|.++..+++..+. .+++++|+.++. ...+++++ .+|+.+ + .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 466789999999999999999999765 799999985421 13578999 999876 2 22
Q ss_pred -CccEEEecchhccC----ChhH-----HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 252 -SADAFLFKLIFHDY----DDEV-----CLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 252 -~~D~i~~~~vlh~~----~d~~-----~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.||+|++...+|.. .+.. ...+++++.+.|+| ||++++...
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 49999986654431 2221 14789999999999 899888654
No 197
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.99 E-value=3.9e-10 Score=100.24 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-------CCc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-------PSA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-------~~~ 253 (359)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++|+++.+|..+ + . ..|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 4568999999999999999999987 789999999 777766653 3689999999875 2 2 359
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
|+|++... ......+++.+.+.|+| ||.+++.+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 99998643 22346789999999999 89888766543
No 198
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.98 E-value=1.1e-09 Score=98.87 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=71.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CceEE--eCCCCC-CCCCccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE--TD------NLKFI--AGDMNQ-SIPSADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~--~~------rv~~~--~~d~~~-~~~~~D~i~~~~ 260 (359)
+.++.+|||||||+|.++..++++ .+++++|+.+++..+++ .. +|.++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999987 58999999555433322 11 78999 999987 533599999987
Q ss_pred hhccCChh----H-HHHHHHHHHHhcCCCCCCc--eEEEEee
Q 043623 261 IFHDYDDE----V-CLKLLKNCREAVASSDGRE--KVIIVDI 295 (359)
Q Consensus 261 vlh~~~d~----~-~~~iL~~~~~~L~p~~~gG--~lli~e~ 295 (359)
. +...+. . ..++|+.+.++|+| || .+++..+
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEeC
Confidence 6 443221 1 22479999999999 89 7777443
No 199
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.97 E-value=3.3e-10 Score=97.39 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C--CCceEEeCCCCC--CC---CC-ccEEEe
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------T--DNLKFIAGDMNQ--SI---PS-ADAFLF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~--~rv~~~~~d~~~--~~---~~-~D~i~~ 258 (359)
++.+|||+|||+|.++..++.+.+ .+++++|+ +.+++.+++ . ++++++.+|+.+ +. .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 468999999999999999877643 58999999 788877764 2 689999999876 21 36 999999
Q ss_pred cchhccCChhHHHHHHHHH--HHhcCCCCCCceEEEEeeec
Q 043623 259 KLIFHDYDDEVCLKLLKNC--REAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 259 ~~vlh~~~d~~~~~iL~~~--~~~L~p~~~gG~lli~e~~~ 297 (359)
...+| ..+ ..++++.+ .+.|+| ||.+++.....
T Consensus 132 ~~~~~-~~~--~~~~l~~~~~~~~Lkp---gG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-FNL--AEQAISLLCENNWLKP---NALIYVETEKD 166 (201)
T ss_dssp CCCSS-SCH--HHHHHHHHHHTTCEEE---EEEEEEEEESS
T ss_pred CCCCC-Ccc--HHHHHHHHHhcCccCC---CcEEEEEECCC
Confidence 88755 333 45678888 557999 88887765543
No 200
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.97 E-value=1e-09 Score=102.98 Aligned_cols=94 Identities=16% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCceEEeCCCCC-CCCC-ccEEEecchhcc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE-------TDNLKFIAGDMNQ-SIPS-ADAFLFKLIFHD 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~-------~~rv~~~~~d~~~-~~~~-~D~i~~~~vlh~ 264 (359)
++++|||||||+|.++...+++.. .+|+++|..++++.|++ .++|+++.+|+.+ ..|. +|+|++...-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 468999999999999987777644 38999998656555543 6889999999998 6664 999988543333
Q ss_pred CChh-HHHHHHHHHHHhcCCCCCCceEE
Q 043623 265 YDDE-VCLKLLKNCREAVASSDGREKVI 291 (359)
Q Consensus 265 ~~d~-~~~~iL~~~~~~L~p~~~gG~ll 291 (359)
...+ ....++....+.|+| ||.++
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred ccccchhhhHHHHHHhhCCC---CceEC
Confidence 3322 245678888899999 78765
No 201
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.96 E-value=1.2e-09 Score=98.49 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=80.5
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCC-CC
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA-FPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQ-SI 250 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~-~~ 250 (359)
.++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ ++
T Consensus 90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 4555555 667889999999999999999996 57889999999 777766543 3589999999987 44
Q ss_pred C--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 251 P--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 251 ~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+ .||+|++. .++.. .+|+++.++|+| ||++++..+.
T Consensus 168 ~~~~~D~v~~~-----~~~~~--~~l~~~~~~L~p---gG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVLD-----MLAPW--EVLDAVSRLLVA---GGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEEE-----SSCGG--GGHHHHHHHEEE---EEEEEEEESS
T ss_pred CCCceeEEEEC-----CcCHH--HHHHHHHHhCCC---CCEEEEEeCC
Confidence 3 49999982 33332 679999999999 9999987753
No 202
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.96 E-value=1.8e-09 Score=94.25 Aligned_cols=93 Identities=20% Similarity=0.150 Sum_probs=76.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCC----
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-----PSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSI---- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~---- 250 (359)
..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ .++++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5789999999 777776653 258999999998743
Q ss_pred ---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 251 ---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 251 ---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
..||+|++...+|++ ++++.+.|+| ||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence 249999999988764 4667889999 898888654
No 203
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.96 E-value=9.9e-10 Score=99.02 Aligned_cols=99 Identities=18% Similarity=0.182 Sum_probs=80.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCC-CC-CccEEEecchh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQS-IP-SADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~-~~-~~D~i~~~~vl 262 (359)
+.++.+|||+|||+|.++..+++..+..+++++|+ +.+++.+++ ..++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 788877664 35789999999873 32 49999987643
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCC
Q 043623 263 HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNE 299 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~ 299 (359)
...+++..+.+.|+| ||.+++.+....+
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCccc
Confidence 234678999999999 8998887776543
No 204
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.95 E-value=2.5e-09 Score=93.06 Aligned_cols=95 Identities=7% Similarity=0.024 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-CCC-CccEEEecchhcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~ 264 (359)
.++.+|||||||+|-++..+. |..+++++|+ +.+++.++. ..+..+..+|... +.+ .||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 467899999999999999887 8899999999 778877664 5677889999998 555 4999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
+.+++....+ ++.+.|++ ++++|.=+
T Consensus 181 LE~q~~~~~~-~ll~aL~~----~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT----PRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC----SEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC----CCEEEEcC
Confidence 9877655555 88889998 45555544
No 205
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.94 E-value=6.4e-10 Score=97.27 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSA 253 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~ 253 (359)
..++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++ .++++++.+|+.+ + . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34678999999999999999999887 789999999 777766653 3689999999865 1 1 459
Q ss_pred cEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
|+|++... ......+++++.+.|+| ||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 99998643 23346789999999999 88888876554
No 206
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.94 E-value=7.4e-10 Score=96.94 Aligned_cols=92 Identities=15% Similarity=0.227 Sum_probs=74.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC------CCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCCC--
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP------SIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSIP-- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~~-- 251 (359)
..++.+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ .++++++.+|..++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998654 368999998 777776653 2589999999987443
Q ss_pred -CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 252 -SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 252 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
.||+|++...+|++. +++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 499999999998765 567888999 88887754
No 207
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.94 E-value=3.9e-09 Score=93.26 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=78.7
Q ss_pred HHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCC-C--
Q 043623 183 LIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSI-P-- 251 (359)
Q Consensus 183 ~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~-~-- 251 (359)
.++...+ ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 3444444 567789999999999999999998 679999998 777776653 378999999998844 3
Q ss_pred CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 252 SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 252 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
.||+|++. .++. ..+++++.+.|+| ||++++..+.
T Consensus 158 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 192 (248)
T 2yvl_A 158 IFHAAFVD-----VREP--WHYLEKVHKSLME---GAPVGFLLPT 192 (248)
T ss_dssp CBSEEEEC-----SSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred cccEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 49999973 3333 3669999999999 9999987753
No 208
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.93 E-value=1.7e-09 Score=99.00 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=70.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-----hHHHhcCCC----CCCceEEeC-CCCC-CCCCccEEEecc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-----PHVIADLPE----TDNLKFIAG-DMNQ-SIPSADAFLFKL 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~i~~a~~----~~rv~~~~~-d~~~-~~~~~D~i~~~~ 260 (359)
+.++.+|||||||+|.++..++++ .+++++|+ +..++.+.. .++|+++.+ |+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 466789999999999999999987 47999998 434433221 267999999 9887 544699999976
Q ss_pred hhc---cCChhH-HHHHHHHHHHhcCCCCCCceEEE
Q 043623 261 IFH---DYDDEV-CLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 261 vlh---~~~d~~-~~~iL~~~~~~L~p~~~gG~lli 292 (359)
.++ ...+.. ...+|+.++++|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 653 222222 22679999999999 897766
No 209
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.92 E-value=3.6e-11 Score=106.26 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=95.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CC-CCccEEEecchhc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SI-PSADAFLFKLIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~-~~~D~i~~~~vlh 263 (359)
++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +. ..||+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 57899999999999999999974 79999999 778877664 2589999999987 42 2599999999998
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCcee
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 343 (359)
+.++.. ..+.+++++|+| ||.+++ +......... . ..-.+....+++..++...|...+
T Consensus 156 ~~~~~~--~~~~~~~~~L~p---gG~~i~-~~~~~~~~~~------------~---~~lp~~~~~~~~~~~l~~~g~~~i 214 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP---DGFEIF-RLSKKITNNI------------V---YFLPRNADIDQVASLAGPGGQVEI 214 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS---CHHHHH-HHHHHHCSCE------------E---EEEETTBCHHHHHHTTCTTCCEEE
T ss_pred Ccchhh--hHHHHHHhhcCC---cceeHH-HHHHhhCCce------------E---EECCCCCCHHHHHHHhccCCCEEE
Confidence 877654 357789999999 887443 2211000000 0 001122367788888888776666
Q ss_pred eEEecCCcc
Q 043623 344 KITPLLGLR 352 (359)
Q Consensus 344 ~~~~~~~~~ 352 (359)
+.....+..
T Consensus 215 ~~~~~~~~~ 223 (241)
T 3gdh_A 215 EQNFLNNKL 223 (241)
T ss_dssp EEEEETTEE
T ss_pred EehhhcCcc
Confidence 555554433
No 210
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.92 E-value=7.7e-10 Score=100.44 Aligned_cols=102 Identities=25% Similarity=0.381 Sum_probs=75.4
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIPS 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~~ 252 (359)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 44555555 5677899999999999999999984 48999999 777766543 2589999999998 7778
Q ss_pred ccEEEecchhccCChhHHHHHHHH--------------H--HHhcCCCCCCceEE
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKN--------------C--REAVASSDGREKVI 291 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~--------------~--~~~L~p~~~gG~ll 291 (359)
||+|+++ ..+++..+...++|.. + +.+++| ||+++
T Consensus 94 fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~y 144 (285)
T 1zq9_A 94 FDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKLY 144 (285)
T ss_dssp CSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTTC
T ss_pred hcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCccc
Confidence 9998885 3445555544455532 2 458899 88653
No 211
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.91 E-value=9.9e-10 Score=96.96 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=76.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C-------CC
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I-------PS 252 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~-------~~ 252 (359)
..++.+|||||||+|..+..+++..| +.+++++|+ +++++.+++ .++|+++.+|..+ + . ..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 34578999999999999999999987 789999999 777766653 4579999999875 2 2 35
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
||+|++... ......+++.+.+.|+| ||.+++.+..
T Consensus 148 fD~I~~d~~-----~~~~~~~l~~~~~~L~p---GG~lv~d~~~ 183 (237)
T 3c3y_A 148 YDFGFVDAD-----KPNYIKYHERLMKLVKV---GGIVAYDNTL 183 (237)
T ss_dssp EEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred cCEEEECCc-----hHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence 999997632 23456889999999999 8877665543
No 212
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.91 E-value=4.4e-10 Score=111.79 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=80.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C--CCceEEeCCCCC---CCC--CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----T--DNLKFIAGDMNQ---SIP--SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~--~rv~~~~~d~~~---~~~--~~D~i~~~ 259 (359)
+.++.+|||||||.|.++..|++. +.+|+|+|. +.+++.|+. . -+|+|..++..+ ..+ .||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 346789999999999999999997 568999999 778877653 2 468999999876 232 49999999
Q ss_pred chhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 260 LIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 260 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
.+|||.+++....-+..+.+.|++ +++.++.....
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~ 176 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAV 176 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCC
T ss_pred cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecc
Confidence 999999988755556677788887 67777765543
No 213
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.91 E-value=5.6e-10 Score=98.20 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-C------CCcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-I------PSAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-~------~~~D 254 (359)
.++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++ .++|+++.+|+.+ + . ..||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3568999999999999999999987 789999999 777776653 3579999999754 1 1 4599
Q ss_pred EEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 255 AFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
+|++... ......+++++.+.|+| ||.+++.+....
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence 9997653 23456789999999999 888887665543
No 214
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.91 E-value=1e-09 Score=99.55 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-CC-CccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-IP-SADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~~-~~D~i~ 257 (359)
+++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+ + .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999999878889999999 777766542 3689999999876 1 23 499999
Q ss_pred ecchhccCChhHH--HHHHHHHHHhcCCCCCCceEEEE
Q 043623 258 FKLIFHDYDDEVC--LKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 258 ~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
+....+..+.... .+++++++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8654333222222 5889999999999 8887765
No 215
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.91 E-value=2e-09 Score=92.22 Aligned_cols=88 Identities=15% Similarity=0.223 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCceEEeCCCCCCCCCccEEEecchhccCChhHH
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-TDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVC 270 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~ 270 (359)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+....||+|++...+|++++...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 45689999999999999999987 5457999999 788877764 23899999999872146999999999998876544
Q ss_pred HHHHHHHHHhc
Q 043623 271 LKLLKNCREAV 281 (359)
Q Consensus 271 ~~iL~~~~~~L 281 (359)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 57888888776
No 216
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.90 E-value=1.2e-09 Score=93.93 Aligned_cols=96 Identities=9% Similarity=0.114 Sum_probs=73.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--CCC--CccEEEecchh
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--SIP--SADAFLFKLIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~~~--~~D~i~~~~vl 262 (359)
++.+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 468999999999999999887753 38999999 788877764 2589999999876 332 49999998775
Q ss_pred ccCChhHHHHHHHHHHH--hcCCCCCCceEEEEeee
Q 043623 263 HDYDDEVCLKLLKNCRE--AVASSDGREKVIIVDIV 296 (359)
Q Consensus 263 h~~~d~~~~~iL~~~~~--~L~p~~~gG~lli~e~~ 296 (359)
| ..+ ...+++.+.+ .|+| ||.+++....
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 5 333 3466777766 4999 8888766543
No 217
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.90 E-value=8.8e-10 Score=99.51 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-C-CCccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-I-PSADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~-~~~D~i~ 257 (359)
+.+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+ + . ..||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999998777789999999 777766542 4789999999876 2 2 2499999
Q ss_pred ecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEEE
Q 043623 258 FKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 258 ~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
+....+..+... ..++++.++++|+| ||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 965443322111 24789999999999 7877664
No 218
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.89 E-value=2.9e-09 Score=92.96 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=74.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCC---CCccE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSI---PSADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~---~~~D~ 255 (359)
..++.+|||||||+|.++..+++.. |+.+++++|+ +.+++.+++ .++++++.+|+.... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999885 6679999999 777776653 258999999987632 24999
Q ss_pred EEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 256 FLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 256 i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
|++...++++. +++.+.|+| ||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence 99998886544 567889999 898888644
No 219
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.89 E-value=1.3e-09 Score=100.42 Aligned_cols=99 Identities=10% Similarity=0.129 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCC--C--CCCccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQ--S--IPSADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~--~--~~~~D~i 256 (359)
+.+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+ + ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 777765542 3689999999876 2 2359999
Q ss_pred Eecchhcc---CChhH--HHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 257 LFKLIFHD---YDDEV--CLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 257 ~~~~vlh~---~~d~~--~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
++....|. -+... ..+++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99866544 11111 25789999999999 88888764
No 220
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.89 E-value=8.3e-09 Score=99.67 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=80.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC--CccEEEe
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP--SADAFLF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~--~~D~i~~ 258 (359)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+|+++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999887 79999999 666665543 3579999999987 3 44 3999996
Q ss_pred ------cchhccCChh-------HH-------HHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 259 ------KLIFHDYDDE-------VC-------LKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 259 ------~~vlh~~~d~-------~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
..+++..++. +. .++|+++.+.||| ||++++......
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 3455544432 11 4789999999999 899988776543
No 221
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.89 E-value=1.1e-09 Score=101.38 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC---CC--CCccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ---SI--PSADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~---~~--~~~D~i 256 (359)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+||+++.+|+.+ .. ..||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 778776653 3689999999765 22 249999
Q ss_pred EecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEEE
Q 043623 257 LFKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 257 ~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
++....+....+. ..++++.++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9864421111111 35789999999999 8877764
No 222
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.88 E-value=1.3e-09 Score=98.83 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC----------------CCCCceEEeCCCCC---CCCC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP----------------ETDNLKFIAGDMNQ---SIPS 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~----------------~~~rv~~~~~d~~~---~~~~ 252 (359)
..+.+|||||||+|.++..+++. |..+++++|+ +.+++.++ ..+|++++.+|..+ ....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999998 8889999999 77766543 24689999999765 1235
Q ss_pred ccEEEecchhccCChhH--HHHHHHHHHHhcCCCCCCceEEEE
Q 043623 253 ADAFLFKLIFHDYDDEV--CLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
||+|++....+..+... ..++++++++.|+| ||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 99999865543222222 25789999999999 8877765
No 223
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.88 E-value=1.1e-09 Score=100.53 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C--CCCccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S--IPSADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~--~~~~D~i~ 257 (359)
+.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+ + ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999999878889999999 777766542 3689999999876 2 23599999
Q ss_pred ecchhccCChhHH--HHHHHHHHHhcCCCCCCceEEEEe
Q 043623 258 FKLIFHDYDDEVC--LKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 258 ~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+...-+.-++... .+++++++++|+| ||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 8654322222221 5889999999999 88777654
No 224
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.88 E-value=9.5e-10 Score=100.69 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-C-CCccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-I-PSADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~-~~~D~i~ 257 (359)
..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+ + . ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 777766543 4789999999865 2 2 2499999
Q ss_pred ecchhccCChh--HHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 258 FKLIFHDYDDE--VCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 258 ~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 86544322211 124689999999999 88777654
No 225
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.87 E-value=1.5e-09 Score=100.20 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCCC---C-CCccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQS---I-PSADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~~---~-~~~D~i~ 257 (359)
+.+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+. . ..||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999999878889999999 777766542 36899999998662 2 2499999
Q ss_pred ecchhccCC-hhHH--HHHHHHHHHhcCCCCCCceEEEE
Q 043623 258 FKLIFHDYD-DEVC--LKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 258 ~~~vlh~~~-d~~~--~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
+...- .+. .... .++++++++.|+| ||.+++.
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 86432 222 1111 5889999999999 7877764
No 226
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.86 E-value=4.2e-09 Score=94.29 Aligned_cols=89 Identities=10% Similarity=0.143 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCCCCCCccEEEecch
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQSIPSADAFLFKLI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~~~~~~D~i~~~~v 261 (359)
+.+.+|||||||+|..+..+++. + .+++++|+ +.+++.+++ .+|++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999998 7 89999999 888888765 358999999988733569999986
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
.+++. .+++.+++.|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 23332 489999999999 8877774
No 227
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.85 E-value=5.7e-09 Score=93.88 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=89.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CC-CCccEEEecch
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SI-PSADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~-~~~D~i~~~~v 261 (359)
..++.+|||+|||+|.+++.+++. ...+++++|+ |.+++.+++ .++|+++.+|..+ .. ..||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 457899999999999999999987 4468999999 777776653 6889999999988 32 24999988643
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCc
Q 043623 262 FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFT 341 (359)
Q Consensus 262 lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~ 341 (359)
. ....+|..+.+.|+| ||.|.+.+....+.... ...+.++++.++.|++
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~~~----------------------~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMPR----------------------EPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTTT----------------------TTHHHHHHHHHHTTCE
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEEeeecccccch----------------------hHHHHHHHHHHHcCCc
Confidence 2 124678888999999 88887776654332111 1456678888899987
Q ss_pred ee
Q 043623 342 SY 343 (359)
Q Consensus 342 ~~ 343 (359)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 228
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.85 E-value=1.2e-08 Score=87.72 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCCCccEEEecchhccCC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIPSADAFLFKLIFHDYD 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~ 266 (359)
.++.+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++ .-+++++.+|+.+-...||+|++.-.+|...
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 4568999999999999999998743 37999999 777776653 1279999999987223699999998888876
Q ss_pred hhHHHHHHHHHHHhc
Q 043623 267 DEVCLKLLKNCREAV 281 (359)
Q Consensus 267 d~~~~~iL~~~~~~L 281 (359)
.....++++.+.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 544567888888877
No 229
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.82 E-value=2.1e-09 Score=98.14 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCceEEeCCCCC--C-C-CCccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------TDNLKFIAGDMNQ--S-I-PSADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~~rv~~~~~d~~~--~-~-~~~D~i~ 257 (359)
+.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|+.+ + . ..||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 3458999999999999999999878889999999 777765542 4689999999765 2 2 2499999
Q ss_pred ecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 258 FKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 258 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
+...-+..... ...++++++++.|+| ||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 85332201111 125789999999999 8877774
No 230
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.81 E-value=9.1e-09 Score=96.94 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-CCC--CccEEEecch
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-SIP--SADAFLFKLI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~~~--~~D~i~~~~v 261 (359)
.++.+|||+|||+|.++..++...+..+++++|+ +.+++.+++ .++|+++.+|+.+ +.+ .||+|+++-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 5678999999999999999999988779999999 788877764 2589999999998 543 4999999755
Q ss_pred hccCC-----hhH-HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHH
Q 043623 262 FHDYD-----DEV-CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLF 335 (359)
Q Consensus 262 lh~~~-----d~~-~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll 335 (359)
++... .++ -.++++.+++.| + |+++++.. +.+.+++.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~----g~~~~i~~-------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E----KRGVFITT-------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E----EEEEEEES-------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C----CeEEEEEC-------------------------------CHHHHHHHH
Confidence 43221 111 256888999988 5 44444322 345567788
Q ss_pred HhcCCceeeEEec
Q 043623 336 FDAGFTSYKITPL 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
++.||+..+...+
T Consensus 340 ~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 340 AENGFEIIHHRVI 352 (373)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCEEEEEEEE
Confidence 9999999888777
No 231
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.81 E-value=1.5e-08 Score=93.85 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CceEEeCCCCC--C-----CCCccEEE
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TD-NLKFIAGDMNQ--S-----IPSADAFL 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~-rv~~~~~d~~~--~-----~~~~D~i~ 257 (359)
++.+|||+|||+|.++..+++... +++++|+ +.+++.+++ .+ +++++.+|+++ + ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 467999999999999999999644 9999999 778877654 22 59999999987 2 23599999
Q ss_pred ecchhccC--------ChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 258 FKLIFHDY--------DDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 258 ~~~vlh~~--------~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
+.-..... ..+...++++.+.+.|+| ||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence 94321110 012346889999999999 8987776554
No 232
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.79 E-value=4.9e-09 Score=95.77 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=70.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCCCc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIPSA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~~~ 253 (359)
..+++... ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 44555554 566789999999999999999987 458999999 777766553 3689999999998 67789
Q ss_pred cEEEecchhccCChhHHHHHH---------------HHHHHhcCC
Q 043623 254 DAFLFKLIFHDYDDEVCLKLL---------------KNCREAVAS 283 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL---------------~~~~~~L~p 283 (359)
|+|+++ ..+++..+...++| ..+.+.+++
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 999875 44557666666666 346677877
No 233
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.77 E-value=2e-08 Score=90.92 Aligned_cols=116 Identities=9% Similarity=0.086 Sum_probs=82.2
Q ss_pred cCCCCeEEEEcC------CchHHHHHHHHHCC-CCeEEEeechHHHhcCCCCCCceE-EeCCCCC-CCC-CccEEEecch
Q 043623 192 FDGLSSLVEVGG------GTGSFARIISEAFP-SIKCSVLELPHVIADLPETDNLKF-IAGDMNQ-SIP-SADAFLFKLI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~i~~a~~~~rv~~-~~~d~~~-~~~-~~D~i~~~~v 261 (359)
++++.+|||+|| |+|. ..+++..| +.+++++|+.+.+ .++++ +.+|+.+ +.+ .||+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 567789999999 5577 44566666 6899999994332 47999 9999988 544 4999998643
Q ss_pred hcc-----CC----hhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHH
Q 043623 262 FHD-----YD----DEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWE 332 (359)
Q Consensus 262 lh~-----~~----d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~ 332 (359)
.+. .+ .+....+|+.+++.||| ||++++..+... ...++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~~----------------------------~~~~l~ 181 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEHS----------------------------WNADLY 181 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSSS----------------------------CCHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEeccC----------------------------CHHHHH
Confidence 221 01 12245789999999999 898888543210 234667
Q ss_pred HHHHhcCCceeeEE
Q 043623 333 RLFFDAGFTSYKIT 346 (359)
Q Consensus 333 ~ll~~aGf~~~~~~ 346 (359)
+++++.||..+++.
T Consensus 182 ~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 182 KLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHHHcCCcEEEEE
Confidence 78888888877665
No 234
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.77 E-value=8.4e-09 Score=93.00 Aligned_cols=104 Identities=12% Similarity=0.104 Sum_probs=76.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C------CCCccEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S------IPSADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~------~~~~D~i 256 (359)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ..+++++.+|+.+ + ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998877 79999999 667765543 3489999999876 2 2359999
Q ss_pred Eec------chhcc---CChh-------HHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 257 LFK------LIFHD---YDDE-------VCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 257 ~~~------~vlh~---~~d~-------~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
++. .+++. |+.+ .-.++|+++.+.||| ||++++......
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCC
Confidence 986 23321 1111 125789999999999 898887665443
No 235
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.72 E-value=3.9e-08 Score=93.97 Aligned_cols=97 Identities=15% Similarity=0.064 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-C-CCccEEEecchhcc----
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-I-PSADAFLFKLIFHD---- 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-~-~~~D~i~~~~vlh~---- 264 (359)
.+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+++. . ..||+|+++--...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCcccc
Confidence 345699999999999999999987 6789999999 7777766 6899999999883 2 35999999622211
Q ss_pred ------CChhHH-----------------HHHHHHHHHhcCCCCCCceEEEEee
Q 043623 265 ------YDDEVC-----------------LKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 265 ------~~d~~~-----------------~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
++++.. ..+++++.+.|+| ||+++++-+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 222221 2568999999999 898887655
No 236
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.71 E-value=1.7e-08 Score=97.16 Aligned_cols=102 Identities=9% Similarity=0.067 Sum_probs=76.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~ 259 (359)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .. |.++.+|+.+ + .+ .||+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999998865 68999999 777766653 33 8999999876 3 23 49999961
Q ss_pred ------chhc-------cCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 260 ------LIFH-------DYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 260 ------~vlh-------~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
.+++ .|+.+.. .++|+.+.+.||| ||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccC
Confidence 2222 2333222 5789999999999 88887765543
No 237
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.69 E-value=2.5e-08 Score=88.36 Aligned_cols=88 Identities=17% Similarity=0.334 Sum_probs=62.8
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC-cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS-AD 254 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~-~D 254 (359)
..+++.+. ..++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 20 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 20 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 34555554 5567899999999999999999986 68999999 777766543 4689999999988 6652 33
Q ss_pred EEEecchhccCChhHHHHH
Q 043623 255 AFLFKLIFHDYDDEVCLKL 273 (359)
Q Consensus 255 ~i~~~~vlh~~~d~~~~~i 273 (359)
..++++..++++.+...++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~ 114 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKI 114 (244)
T ss_dssp CEEEEECCGGGHHHHHHHH
T ss_pred eEEEEeCCcccCHHHHHHH
Confidence 3555555555544333333
No 238
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.69 E-value=1.5e-08 Score=94.40 Aligned_cols=99 Identities=10% Similarity=0.121 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCC-----CCCceEEeCCCCCCCC--CccEEEecc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPS-----IKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQSIP--SADAFLFKL 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~~~~--~~D~i~~~~ 260 (359)
+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++. ..++.++.+|.+++.+ .||+|+++-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999988764 68999999 777776653 3368999999988433 599999998
Q ss_pred hhccCChhHH----------------HHHHHHHHHhcCCCCCCceEEEEee
Q 043623 261 IFHDYDDEVC----------------LKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 261 vlh~~~d~~~----------------~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.++.++.++. ..+++++.+.|+| ||+++++-+
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 7766654432 2579999999999 898887664
No 239
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.66 E-value=9.3e-09 Score=91.13 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=75.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC---C
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP---S 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~---~ 252 (359)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++ .
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 45666665 5667899999999999999999985 68999999 778887765 3689999999998 654 2
Q ss_pred ccEEEecchhccCChhHHHHHH--------------HHHHHhcCCCCCCceEEEE
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLL--------------KNCREAVASSDGREKVIIV 293 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL--------------~~~~~~L~p~~~gG~lli~ 293 (359)
| .++++..++.+.+....++ +.+.+.|+| ||++.++
T Consensus 95 f--~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~ 144 (245)
T 1yub_A 95 Y--KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLL 144 (245)
T ss_dssp E--EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHH
T ss_pred c--EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhh
Confidence 6 3444444444443333333 568899999 8887664
No 240
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.64 E-value=7e-08 Score=92.59 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=79.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C--CC--CccEEEe--
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S--IP--SADAFLF-- 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~--~~--~~D~i~~-- 258 (359)
..++.+|||+|||+|..+..+++..|+.+++++|+ +..++.+++ .-+++++.+|+.+ + ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45678999999999999999999998889999998 666655442 3358899999987 3 33 4999986
Q ss_pred ----cchhccCChh-------HH-------HHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 259 ----KLIFHDYDDE-------VC-------LKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 259 ----~~vlh~~~d~-------~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
..++++.++. +. .++|+++.+.||| ||++++......
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 2344443331 11 4789999999999 899888776543
No 241
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.61 E-value=1.2e-07 Score=91.95 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEec--
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFP-SIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFK-- 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~-- 259 (359)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+|+++.+|+.+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 479999999 677766553 3579999999987 3 33 49999972
Q ss_pred ----chhc-------cCChhH-------HHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 260 ----LIFH-------DYDDEV-------CLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 260 ----~vlh-------~~~d~~-------~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
.+++ +|+.+. -.++|+++.+.||| ||+|++......
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCC
Confidence 2332 233322 13689999999999 898887665443
No 242
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.60 E-value=3.6e-08 Score=94.71 Aligned_cols=103 Identities=11% Similarity=0.137 Sum_probs=75.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-C--CC-CccEEEec
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-S--IP-SADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~--~~-~~D~i~~~ 259 (359)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+|.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 566789999999999999999998654 68999999 667665543 4579999999876 2 33 49999873
Q ss_pred c------hhcc-------CChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 260 L------IFHD-------YDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 260 ~------vlh~-------~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
- ++.. |+.+.. .++|+.+.+.||| ||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence 2 2221 221111 2789999999999 88887765544
No 243
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.58 E-value=9e-08 Score=86.88 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=63.8
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC--c
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS--A 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~--~ 253 (359)
..++.... ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ ++++ |
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 44555555 567789999999999999999998 468999999 777777654 4789999999998 6664 9
Q ss_pred cEEEecchhccCChh
Q 043623 254 DAFLFKLIFHDYDDE 268 (359)
Q Consensus 254 D~i~~~~vlh~~~d~ 268 (359)
|+|+++-. ++++.+
T Consensus 116 D~Iv~NlP-y~is~p 129 (295)
T 3gru_A 116 NKVVANLP-YQISSP 129 (295)
T ss_dssp SEEEEECC-GGGHHH
T ss_pred cEEEEeCc-ccccHH
Confidence 99986643 344443
No 244
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.53 E-value=8.1e-08 Score=89.14 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCCCCCCccEEEecchhcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQSIPSADAFLFKLIFHD 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~~~~~~D~i~~~~vlh~ 264 (359)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++ .++++++.+|+++....||+|++.-.-
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK-- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence 4678999999999999999 77 4679999999 778776654 368999999998843569999985321
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecC
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVN 298 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~ 298 (359)
...++++.+.+.|+| ||.+++.+....
T Consensus 269 ----~~~~~l~~~~~~L~~---gG~l~~~~~~~~ 295 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEE---GGVIHYYTIGKD 295 (336)
T ss_dssp ----TGGGGHHHHHHHEEE---EEEEEEEEEESS
T ss_pred ----hHHHHHHHHHHHcCC---CCEEEEEEeecC
Confidence 123679999999999 888888777644
No 245
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.48 E-value=5.5e-08 Score=91.95 Aligned_cols=99 Identities=11% Similarity=0.044 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CceEEeCCCCC--C-C----CCccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TD-NLKFIAGDMNQ--S-I----PSADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~-rv~~~~~d~~~--~-~----~~~D~i 256 (359)
.++.+|||+|||+|.++..+++... .+++++|+ +.+++.+++ .+ +++++.+|+++ + . ..||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 4568999999999999999998632 38999999 778777654 23 89999999876 2 1 259999
Q ss_pred Eecchh-----ccCC--hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 257 LFKLIF-----HDYD--DEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 257 ~~~~vl-----h~~~--d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
++.-.. +... .....++++.+.+.|+| ||.+++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 985322 1222 12234678889999999 787766543
No 246
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.46 E-value=1.1e-07 Score=90.22 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=74.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC--C-----CCCccEEEe
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ--S-----IPSADAFLF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~--~-----~~~~D~i~~ 258 (359)
++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+++ + ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999986 3458999999 778776654 2389999999876 2 125999998
Q ss_pred cchhccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 259 KLIFHDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 259 ~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
.-..+..+. .....++.++.+.|+| ||.+++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEECC
Confidence 532222111 3356789999999999 8888776653
No 247
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.46 E-value=3.2e-07 Score=81.30 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=65.9
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CCCC-c-cE
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SIPS-A-DA 255 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~~~-~-D~ 255 (359)
..+++.+. ..++.+|||||||+|.++..++++ +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++++ + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 34555555 566789999999999999999987 4578999999 778777654 4689999999998 6653 2 45
Q ss_pred EEecchhccCChhHHHHHH
Q 043623 256 FLFKLIFHDYDDEVCLKLL 274 (359)
Q Consensus 256 i~~~~vlh~~~d~~~~~iL 274 (359)
+++.+..++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6667766665554333333
No 248
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.46 E-value=2.1e-07 Score=88.31 Aligned_cols=99 Identities=7% Similarity=-0.060 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C-C-CceEEeCCCCC--C-----CCCccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------T-D-NLKFIAGDMNQ--S-----IPSADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~-~-rv~~~~~d~~~--~-----~~~~D~i 256 (359)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . . +++++.+|+++ + ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999864 358999999 778776653 2 3 79999999887 2 1259999
Q ss_pred EecchhccCC-------hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 257 LFKLIFHDYD-------DEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 257 ~~~~vlh~~~-------d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
++.-.....+ .....+++.++.+.|+| ||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 9863221110 13356889999999999 787776553
No 249
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.44 E-value=2.9e-07 Score=87.07 Aligned_cols=99 Identities=9% Similarity=0.016 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC---CCC-CccEEEecchh
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ---SIP-SADAFLFKLIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~---~~~-~~D~i~~~~vl 262 (359)
.++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .-...+..+|+++ ..+ .||+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 447899999999999999999974 45999999 778877664 2223567888876 122 39999986432
Q ss_pred ccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 263 HDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 263 h~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
...+. ..-.++++.+.+.|+| ||.++++...
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 11111 1234789999999999 8988866654
No 250
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.44 E-value=1.4e-07 Score=89.17 Aligned_cols=97 Identities=7% Similarity=0.008 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-----CCCccEEEec
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-----IPSADAFLFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-----~~~~D~i~~~ 259 (359)
++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+++ + -..||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 568999999 778877654 2459999999886 2 1259999985
Q ss_pred chhccCCh-------hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 260 LIFHDYDD-------EVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 260 ~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
-..+..+. ....+++..+.+.|+| ||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 32211111 3345789999999999 888877665
No 251
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.43 E-value=3.7e-07 Score=86.33 Aligned_cols=103 Identities=8% Similarity=0.046 Sum_probs=75.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS--------------------------------------IKCSVLEL-PHVIAD 232 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~D~-~~~i~~ 232 (359)
+.+...|||.+||+|.++++.+....+ .+++++|+ +.+++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 567789999999999999988875443 56999999 788877
Q ss_pred CCC-------CCCceEEeCCCCC-CCC-CccEEEecchhcc-CC-hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 233 LPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD-YD-DEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 233 a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~-~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
|+. .++|+++.+|+.+ +.+ .||+|+++--.+. .. .++...+.+.+.+.|++ -+|++++|+..
T Consensus 279 Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~iit~ 351 (393)
T 3k0b_A 279 AKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEEEEEC
T ss_pred HHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEEEEEC
Confidence 653 4579999999998 444 5999999844322 12 24455677777777765 34788888654
No 252
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.43 E-value=9.8e-07 Score=84.68 Aligned_cols=90 Identities=11% Similarity=0.193 Sum_probs=64.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCC-----C--CccEEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSI-----P--SADAFL 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~-----~--~~D~i~ 257 (359)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..+++|+.+|+.+.. + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456789999999999999999987 568999999 778877653 358999999998732 1 499999
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
+.--- ..+..+++.+.+ ++| ++.+++
T Consensus 362 ~dPPr-----~g~~~~~~~l~~-~~p---~~ivyv 387 (433)
T 1uwv_A 362 LDPAR-----AGAAGVMQQIIK-LEP---IRIVYV 387 (433)
T ss_dssp ECCCT-----TCCHHHHHHHHH-HCC---SEEEEE
T ss_pred ECCCC-----ccHHHHHHHHHh-cCC---CeEEEE
Confidence 84322 112234555543 678 444444
No 253
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.42 E-value=6.1e-06 Score=77.11 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=93.9
Q ss_pred CCeEEEEcCCchHHHHHH--------HHHC-------CCCeEEEeechHH--------HhcCCC-----------CCC--
Q 043623 195 LSSLVEVGGGTGSFARII--------SEAF-------PSIKCSVLELPHV--------IADLPE-----------TDN-- 238 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------i~~a~~-----------~~r-- 238 (359)
..+|+|+|||+|..+..+ .+++ |.+++..-|+|.- +...++ ..+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999999887 2233 7889999998531 122111 011
Q ss_pred -ceEEeCCCCC-CCC--CccEEEecchhccCChh------------------------------------HHHHHHHHHH
Q 043623 239 -LKFIAGDMNQ-SIP--SADAFLFKLIFHDYDDE------------------------------------VCLKLLKNCR 278 (359)
Q Consensus 239 -v~~~~~d~~~-~~~--~~D~i~~~~vlh~~~d~------------------------------------~~~~iL~~~~ 278 (359)
+.-+.+.|.. .+| ++|+|+++.+||-.++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2235667776 566 49999999999976511 3345799999
Q ss_pred HhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh-hh----hh-hhhc-------------CCcccCHHHHHHHHH-hc
Q 043623 279 EAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY-DA----LM-MTCV-------------PGIERSEKEWERLFF-DA 338 (359)
Q Consensus 279 ~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~----~~-~~~~-------------~g~~~t~~e~~~ll~-~a 338 (359)
+.|+| ||++++.-...++....... .....+ +. +. +... .--.++.+|++++++ +.
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~-~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~ 288 (374)
T 3b5i_A 213 AEVKR---GGAMFLVCLGRTSVDPTDQG-GAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANG 288 (374)
T ss_dssp HHEEE---EEEEEEEEEECCCSSTTCCH-HHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHC
T ss_pred HHhCC---CCEEEEEEecCCCCcccccc-chhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcC
Confidence 99999 89988877765543211100 001111 11 10 1111 122368999999998 58
Q ss_pred CCceeeEEe
Q 043623 339 GFTSYKITP 347 (359)
Q Consensus 339 Gf~~~~~~~ 347 (359)
||++.++.-
T Consensus 289 ~F~I~~le~ 297 (374)
T 3b5i_A 289 SFAIDKLVV 297 (374)
T ss_dssp SEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 999877654
No 254
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.40 E-value=1.1e-06 Score=82.68 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=78.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS--------------------------------------IKCSVLEL-PHVIAD 232 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~D~-~~~i~~ 232 (359)
+.+...|+|.+||+|.++++.+....+ .+++++|+ +.+++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 567789999999999999998875443 56999999 788877
Q ss_pred CCC-------CCCceEEeCCCCC-CCC-CccEEEecchhcc-C-ChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 233 LPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD-Y-DDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 233 a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~-~-~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
++. .++|+++.+|+.+ +.+ .||+|+++--.+. . ..++...+.+.+.+.|++ -+|++++|+-.
T Consensus 272 Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~iit~ 344 (384)
T 3ldg_A 272 ARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQFILTN 344 (384)
T ss_dssp HHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEEEEEES
T ss_pred HHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEEEEEEC
Confidence 653 4679999999998 444 5999998844322 2 235566788888888875 44888888754
No 255
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.40 E-value=4.2e-07 Score=81.45 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=66.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCceEEeCCCCC-CCC---Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---TDNLKFIAGDMNQ-SIP---SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---~~rv~~~~~d~~~-~~~---~~ 253 (359)
..+++... ..++ +|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 34555555 5666 99999999999999999985 58999999 777766543 4689999999998 655 36
Q ss_pred cEEEecchhccCChhHHHHHHHH
Q 043623 254 DAFLFKLIFHDYDDEVCLKLLKN 276 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~~~~iL~~ 276 (359)
|.|+ ++..++.+.+-..++|..
T Consensus 112 ~~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EEECSSCCHHHHHHHHHH
T ss_pred cEEE-ecCcccccHHHHHHHhcC
Confidence 6654 555666776655566654
No 256
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.38 E-value=5.7e-07 Score=89.31 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=85.8
Q ss_pred hhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccc--cCCCCeEEEEcCCchHHHHHHHHHC----CCCeEEEeechHH
Q 043623 156 IWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHI--FDGLSSLVEVGGGTGSFARIISEAF----PSIKCSVLELPHV 229 (359)
Q Consensus 156 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~~~~ 229 (359)
-|+-+++|+-.-..|.+++.. .+....... ..+...|+|||||+|-++...+++. -++++.+++-.++
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhhcCChhhHHHHHHHHHH------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 477788888777777777542 222222211 1234579999999999955444432 2347899997444
Q ss_pred HhcCCC-------CCCceEEeCCCCC-CCCC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceE
Q 043623 230 IADLPE-------TDNLKFIAGDMNQ-SIPS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKV 290 (359)
Q Consensus 230 i~~a~~-------~~rv~~~~~d~~~-~~~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~l 290 (359)
...+++ .++|+++.+|+.+ ..|+ +|+|++-..=+....|-...+|....+.||| ||.+
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 444332 7899999999999 7775 9999887654445555566778888889999 7754
No 257
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.38 E-value=2.6e-07 Score=89.03 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------C--CCceEEeCCCCC-C
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAF-------------PSIKCSVLEL-PHVIADLPE------T--DNLKFIAGDMNQ-S 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~i~~a~~------~--~rv~~~~~d~~~-~ 249 (359)
.+..+|+|.|||+|.++..+.+.. +..+++|+|+ +.+++.|+. . .++.++.+|.+. +
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 456799999999999999988763 4568999999 777766542 1 278899999988 4
Q ss_pred CC-CccEEEecchhccCChh---------------HHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 250 IP-SADAFLFKLIFHDYDDE---------------VCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 250 ~~-~~D~i~~~~vlh~~~d~---------------~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.. .||+|+++-.++..... .-..+++++.+.|+| ||++.++-+
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 33 59999998666542211 124789999999999 999987764
No 258
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.34 E-value=3.5e-07 Score=83.23 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=62.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCceEEeCCCCC-C--C--
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----TDNLKFIAGDMNQ-S--I-- 250 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----~~rv~~~~~d~~~-~--~-- 250 (359)
..+++.+. ..++.+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ .++++++.+|+.+ + .
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 45566555 56778999999999999999999999889999999 788877653 3689999999876 3 1
Q ss_pred ---CCccEEEecc
Q 043623 251 ---PSADAFLFKL 260 (359)
Q Consensus 251 ---~~~D~i~~~~ 260 (359)
..||.|++.-
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 3599998754
No 259
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.34 E-value=2.9e-07 Score=81.89 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=60.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCC----
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIP---- 251 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~---- 251 (359)
..+++... ..++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 34555555 5677899999999999999999974 58999999 778776654 4789999999998 553
Q ss_pred --CccEEEecchhccCChh
Q 043623 252 --SADAFLFKLIFHDYDDE 268 (359)
Q Consensus 252 --~~D~i~~~~vlh~~~d~ 268 (359)
.+| +.++.-++.+.+
T Consensus 95 ~~~~~--vv~NlPY~is~~ 111 (255)
T 3tqs_A 95 DKPLR--VVGNLPYNISTP 111 (255)
T ss_dssp SSCEE--EEEECCHHHHHH
T ss_pred CCCeE--EEecCCcccCHH
Confidence 255 444544444443
No 260
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.34 E-value=1.4e-07 Score=85.04 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=54.8
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-CCCC
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-SIPS 252 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~~~~ 252 (359)
..+++.+. ..++.+|||||||+|.++..++++.+. .+++++|+ +.+++.+++ .++++++.+|+.+ ++++
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 34555554 567789999999999999999998653 55999999 778877764 4789999999998 6654
No 261
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.31 E-value=9.6e-07 Score=83.33 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=76.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPS--------------------------------------IKCSVLEL-PHVIAD 232 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~D~-~~~i~~ 232 (359)
+.++.+|||.+||+|.++++.+....+ .+++++|+ +.+++.
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~ 272 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI 272 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence 566789999999999999998876432 57999999 788887
Q ss_pred CCC-------CCCceEEeCCCCC-CCC-CccEEEecchhcc-CC-hhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 233 LPE-------TDNLKFIAGDMNQ-SIP-SADAFLFKLIFHD-YD-DEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 233 a~~-------~~rv~~~~~d~~~-~~~-~~D~i~~~~vlh~-~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
|+. .++|++..+|+.+ +.+ .||+|+++--... +. .++..++.+.+.+.|++ -+|++++|+..
T Consensus 273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~iit~ 345 (385)
T 3ldu_A 273 ARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEEEEES
T ss_pred HHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEEEEEC
Confidence 764 3579999999998 444 4999999755432 22 34456777777777765 33788877654
No 262
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.29 E-value=5.9e-07 Score=83.13 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------C----CCceEEeCCCCC--C-----C
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----------T----DNLKFIAGDMNQ--S-----I 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----------~----~rv~~~~~d~~~--~-----~ 250 (359)
+.+.+|||||||+|..+.++++..+ .+++.+|+ +.+++.+++ . +|++++.+|.++ . -
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 4578999999999999999998766 78999999 778776543 1 279999999887 2 1
Q ss_pred CCccEEEecchh-c-cCCh--hHHHHHHHHH----HHhcCCCCCCceEEEE
Q 043623 251 PSADAFLFKLIF-H-DYDD--EVCLKLLKNC----REAVASSDGREKVIIV 293 (359)
Q Consensus 251 ~~~D~i~~~~vl-h-~~~d--~~~~~iL~~~----~~~L~p~~~gG~lli~ 293 (359)
..||+|++--.- . .... .-..++++.+ +++|+| ||.+++.
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~p---gGilv~q 313 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 313 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCC---CcEEEEE
Confidence 249999986432 1 1011 1123555665 899999 7766554
No 263
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.28 E-value=7.4e-06 Score=76.66 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=91.7
Q ss_pred CCeEEEEcCCchHHHHHHHHH-----------------CCCCeEEEeech-----------HH-HhcCC----CCCCceE
Q 043623 195 LSSLVEVGGGTGSFARIISEA-----------------FPSIKCSVLELP-----------HV-IADLP----ETDNLKF 241 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-i~~a~----~~~rv~~ 241 (359)
..+|+|+||++|..+..+... .|.++++.-|+| +. .+.++ ...+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999999987665 477889999986 11 11110 1123344
Q ss_pred ---EeCCCCC-CCC--CccEEEecchhccCChh-------------------------HHH------------HHHHHHH
Q 043623 242 ---IAGDMNQ-SIP--SADAFLFKLIFHDYDDE-------------------------VCL------------KLLKNCR 278 (359)
Q Consensus 242 ---~~~d~~~-~~~--~~D~i~~~~vlh~~~d~-------------------------~~~------------~iL~~~~ 278 (359)
+.+.|.. .+| ++|+++++.+||-.++. .+. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666 566 49999999999865422 122 2378889
Q ss_pred HhcCCCCCCceEEEEeeecCCC--CCCchHHHHHHHhhhhhhh--------hc--CCcccCHHHHHHHHHhcC-CceeeE
Q 043623 279 EAVASSDGREKVIIVDIVVNEK--KDKPEITEAKLLYDALMMT--------CV--PGIERSEKEWERLFFDAG-FTSYKI 345 (359)
Q Consensus 279 ~~L~p~~~gG~lli~e~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~--~g~~~t~~e~~~ll~~aG-f~~~~~ 345 (359)
+.|+| ||++++.-...++. .....-.....+.++.... .. .-..++.+|++++++++| |++.++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 89888877765553 2110000111122211110 01 123468999999999985 787765
Q ss_pred E
Q 043623 346 T 346 (359)
Q Consensus 346 ~ 346 (359)
.
T Consensus 290 e 290 (384)
T 2efj_A 290 E 290 (384)
T ss_dssp E
T ss_pred E
Confidence 4
No 264
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.25 E-value=1.1e-05 Score=74.31 Aligned_cols=143 Identities=10% Similarity=0.084 Sum_probs=105.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCC---------------------------CCCceEEeCC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPE---------------------------TDNLKFIAGD 245 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~---------------------------~~rv~~~~~d 245 (359)
.+...||.+|||.......+...+|+++++-+|.|++++.-++ .++.+++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999999888999999999988754321 3789999999
Q ss_pred CCC-CC----------CC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh
Q 043623 246 MNQ-SI----------PS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY 313 (359)
Q Consensus 246 ~~~-~~----------~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~ 313 (359)
+.+ ++ ++ ..++++-.+|++++.+++.++|+.+.+.+ | +|.+++.|.+.+.....+ +... ...
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~~-fg~~-m~~ 249 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPNDR-FGAI-MQS 249 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTCC-HHHH-HHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcch-HHHH-HHH
Confidence 987 32 12 67889999999999999999999999988 5 688889999877332221 2110 111
Q ss_pred hhhh-hhh--cC-CcccCHHHHHHHHHhcCCc
Q 043623 314 DALM-MTC--VP-GIERSEKEWERLFFDAGFT 341 (359)
Q Consensus 314 ~~~~-~~~--~~-g~~~t~~e~~~ll~~aGf~ 341 (359)
.+.- ... .+ ....+.++..+.|.++||+
T Consensus 250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1111 101 11 2345899999999999997
No 265
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.24 E-value=2e-06 Score=82.10 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCCCCC-CccEEEecchhcc
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQSIP-SADAFLFKLIFHD 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~~~~-~~D~i~~~~vlh~ 264 (359)
.++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .+ ++|+.+|+++..+ .||+|++.-.-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 45689999999999999999986 458999999 788877764 23 8999999998433 6999998543211
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
... .+++.+. .|+| +|.+++.
T Consensus 366 ~~~----~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 366 LHP----RLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp SCH----HHHHHHH-HHCC---SEEEEEE
T ss_pred hHH----HHHHHHH-hcCC---CcEEEEE
Confidence 111 3455554 4899 7766664
No 266
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.23 E-value=1.5e-06 Score=88.22 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCceEEeCCCCC--C-C-CCccEEEec
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-------T-DNLKFIAGDMNQ--S-I-PSADAFLFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-------~-~rv~~~~~d~~~--~-~-~~~D~i~~~ 259 (359)
.++.+|||+|||+|.++..+++... .+++++|+ +.+++.+++ . ++++++.+|+++ + . ..||+|++.
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 3578999999999999999988543 36999999 778877654 2 589999999987 2 2 259999985
Q ss_pred chhc--------cCC-hhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 260 LIFH--------DYD-DEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 260 ~vlh--------~~~-d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
--.. .+. ...-.++++.+.+.|+| ||.+++..
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 3211 111 12345789999999999 88777543
No 267
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.23 E-value=5.8e-07 Score=79.78 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=62.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEeCCCCC-CCCC-c-
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIAGDMNQ-SIPS-A- 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~~d~~~-~~~~-~- 253 (359)
..+++.+. ..++.+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ .++++++.+|+.+ ++++ +
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 44555554 5667899999999999999 64 444444999999 788877654 2589999999988 5543 2
Q ss_pred ----cEEEecchhccCChhHHHHHH
Q 043623 254 ----DAFLFKLIFHDYDDEVCLKLL 274 (359)
Q Consensus 254 ----D~i~~~~vlh~~~d~~~~~iL 274 (359)
+.++.++..++.+.+-..+++
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 356666666665554444444
No 268
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.21 E-value=6.2e-06 Score=65.68 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=64.0
Q ss_pred cCCCCeEEEEcCCch-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCC----CccEEEecchhccC
Q 043623 192 FDGLSSLVEVGGGTG-SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIP----SADAFLFKLIFHDY 265 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~----~~D~i~~~~vlh~~ 265 (359)
..++.+|||||||+| ..+..|++. .++.+++.|+ |..++ ++..|+|+|.. +||+|...+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir----- 97 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR----- 97 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----
Confidence 445689999999999 688888874 4678999998 55555 88999999644 699998876
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 266 DDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 266 ~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
++.+.+..+.++.+.. |.-++|.-...
T Consensus 98 PP~El~~~i~~lA~~v-----~adliI~pL~~ 124 (153)
T 2k4m_A 98 PPAEIHSSLMRVADAV-----GARLIIKPLTG 124 (153)
T ss_dssp CCTTTHHHHHHHHHHH-----TCEEEEECBTT
T ss_pred CCHHHHHHHHHHHHHc-----CCCEEEEcCCC
Confidence 4455666677777766 56677765443
No 269
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.20 E-value=1.9e-06 Score=77.67 Aligned_cols=97 Identities=11% Similarity=0.205 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCceEEeCCCCCCC----CCccEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-----------TDNLKFIAGDMNQSI----PSADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-----------~~rv~~~~~d~~~~~----~~~D~i 256 (359)
+.+++||-||+|.|..+.++++..|..+++.+|+ +.+++.+++ .+|++++.+|..+-. ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5679999999999999999999877779999999 778876543 689999999998722 249999
Q ss_pred EecchhccCChh---HHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 257 LFKLIFHDYDDE---VCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 257 ~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
+.-..= ..... -...+++.++++|+| ||.++..
T Consensus 162 i~D~~d-p~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCTD-PIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp EESCCC-CCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCCC-cCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence 875421 11111 123679999999999 7766654
No 270
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.19 E-value=2e-06 Score=76.49 Aligned_cols=130 Identities=21% Similarity=0.167 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHH-------CCC-----CeEEEeec-h---HHHhcC-----------C------------
Q 043623 194 GLSSLVEVGGGTGSFARIISEA-------FPS-----IKCSVLEL-P---HVIADL-----------P------------ 234 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~i~~a-----------~------------ 234 (359)
+..+|||||+|+|..+..+++. .|+ ++++.+|. | +.+..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999999887664 674 58899996 4 222110 0
Q ss_pred ------C--CCCceEEeCCCCC--C-CC-----CccEEEecc-hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 235 ------E--TDNLKFIAGDMNQ--S-IP-----SADAFLFKL-IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 235 ------~--~~rv~~~~~d~~~--~-~~-----~~D~i~~~~-vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
. ..+++++.+|+.+ + .+ .||+|++-. .....++-.-..+|+.+.+.|+| ||.++....
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tysa-- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFTS-- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESCC--
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEeC--
Confidence 1 2457789999866 2 22 499999853 11111111124689999999999 887764211
Q ss_pred CCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623 298 NEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358 (359)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 358 (359)
...+++.|.++||++.++...+.-..++.+.
T Consensus 215 ------------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~ 245 (257)
T 2qy6_A 215 ------------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGV 245 (257)
T ss_dssp ------------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEE
T ss_pred ------------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEE
Confidence 1235677888999987765555545555554
No 271
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.17 E-value=4.6e-06 Score=73.72 Aligned_cols=110 Identities=8% Similarity=0.101 Sum_probs=69.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-HHHhcCCC----CCCceEEeCCCCC-CCC--Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-HVIADLPE----TDNLKFIAGDMNQ-SIP--SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~i~~a~~----~~rv~~~~~d~~~-~~~--~~ 253 (359)
.++.++.. +++..+|||+|||+|.++..++++.+-.+++++|+. +....... ..++..+..++.. .++ .+
T Consensus 64 ~ei~ek~~--l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 64 RWFHERGY--VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHTTS--SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhCC--CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 34444432 677789999999999999998887665567777763 22111111 1245555555432 333 49
Q ss_pred cEEEecchhc---cCChh-HHHHHHHHHHHhcCCCCCC-ceEEEEeeec
Q 043623 254 DAFLFKLIFH---DYDDE-VCLKLLKNCREAVASSDGR-EKVIIVDIVV 297 (359)
Q Consensus 254 D~i~~~~vlh---~~~d~-~~~~iL~~~~~~L~p~~~g-G~lli~e~~~ 297 (359)
|+|++....+ ++-|. ....+|+.+.+.|+| | |.+++ ..+.
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~ 186 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLA 186 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESC
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecC
Confidence 9999987665 12222 223568999999999 8 87776 4443
No 272
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.16 E-value=2.3e-06 Score=84.98 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=82.7
Q ss_pred hhHhhhhChHHHHHHHHHhhcCccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHH----C---------CCCeEE
Q 043623 156 IWGYAEQNHEFNNLFNQGLASDSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEA----F---------PSIKCS 222 (359)
Q Consensus 156 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~----~---------p~~~~~ 222 (359)
.|+-+++|+-.-..|.+++... +...+. ...+...|||||||+|-++...+++ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a------l~d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA------LKDLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH------HHHHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH------HHHhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 4677777877777777765421 111111 0123468999999999997543222 1 234899
Q ss_pred Eeec-hHHHhcCC-----C-CCCceEEeCCCCC-CC------C-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCC
Q 043623 223 VLEL-PHVIADLP-----E-TDNLKFIAGDMNQ-SI------P-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGR 287 (359)
Q Consensus 223 ~~D~-~~~i~~a~-----~-~~rv~~~~~d~~~-~~------~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~g 287 (359)
++|- +.++..++ . .++|+++.+|+.+ .. + .+|+|++-..=.....|-....|..+.+.|+| |
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~ 527 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---T 527 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---T
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---C
Confidence 9998 43332221 1 6889999999998 44 3 49999988765444555556778888899999 7
Q ss_pred ceEE
Q 043623 288 EKVI 291 (359)
Q Consensus 288 G~ll 291 (359)
|.++
T Consensus 528 Gi~i 531 (745)
T 3ua3_A 528 TISI 531 (745)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7543
No 273
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.13 E-value=2.5e-06 Score=75.95 Aligned_cols=71 Identities=10% Similarity=0.236 Sum_probs=54.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-h-------HHHhcCCC-------CCCceEEeCCCCC--C-C---
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-P-------HVIADLPE-------TDNLKFIAGDMNQ--S-I--- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~i~~a~~-------~~rv~~~~~d~~~--~-~--- 250 (359)
..++.+|||+|||+|..+..+++. +.+++++|+ + ++++.+++ .+||+++.+|+.+ + +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445679999999999999999986 568999999 7 66766653 3579999999876 2 3
Q ss_pred -CCccEEEecchhcc
Q 043623 251 -PSADAFLFKLIFHD 264 (359)
Q Consensus 251 -~~~D~i~~~~vlh~ 264 (359)
..||+|++.-.+++
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 35999999755543
No 274
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.00 E-value=3.9e-05 Score=71.19 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=91.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHH----------------CCCCeEEEeechH-----HHhcCCC---CCCceE---EeCCC
Q 043623 194 GLSSLVEVGGGTGSFARIISEA----------------FPSIKCSVLELPH-----VIADLPE---TDNLKF---IAGDM 246 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-----~i~~a~~---~~rv~~---~~~d~ 246 (359)
...+|+|+||++|..+..+... .|..+++.-|+|. ....... ..+-.| +.+.|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4468999999999877654333 5778899999852 1222211 113334 55677
Q ss_pred CC-CCC--CccEEEecchhccCCh-------------------------------hHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 247 NQ-SIP--SADAFLFKLIFHDYDD-------------------------------EVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 247 ~~-~~~--~~D~i~~~~vlh~~~d-------------------------------~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
.. .+| ++|+++++.+||-.++ .+...+|+..++.|+| ||++++
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Confidence 76 566 4999999999986543 1234569999999999 999988
Q ss_pred EeeecCCCCCCc----h-HH-HHHHHhhhhhhhh----------cCCcccCHHHHHHHHHhcCC-ceeeE
Q 043623 293 VDIVVNEKKDKP----E-IT-EAKLLYDALMMTC----------VPGIERSEKEWERLFFDAGF-TSYKI 345 (359)
Q Consensus 293 ~e~~~~~~~~~~----~-~~-~~~~~~~~~~~~~----------~~g~~~t~~e~~~ll~~aGf-~~~~~ 345 (359)
.-...++..... . .. ....+.++..... ..-..++.+|+++++++.|+ ++.+.
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 776665532110 0 00 1111111111110 11234689999999999965 66554
No 275
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.93 E-value=2.1e-06 Score=80.55 Aligned_cols=88 Identities=15% Similarity=0.241 Sum_probs=64.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC--C-C--------------
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ--S-I-------------- 250 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~--~-~-------------- 250 (359)
+.+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++|+.+|+++ + +
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4789999999999999998853 48999999 778877653 3589999999865 1 1
Q ss_pred --CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 251 --PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 251 --~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
..||+|++.- |. ..+...+.+.|++ +|+++++..
T Consensus 292 ~~~~fD~Vv~dP-----Pr---~g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDP-----PR---SGLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECC-----CT---TCCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECc-----Cc---cccHHHHHHHHhC---CCEEEEEEC
Confidence 1589998642 11 1234455566677 788887765
No 276
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.92 E-value=1.8e-05 Score=80.32 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=70.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC------------------------------------------CCCeEEEeec-hH
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF------------------------------------------PSIKCSVLEL-PH 228 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------------p~~~~~~~D~-~~ 228 (359)
+.+...|||.+||+|.++++.+... +..+++++|+ +.
T Consensus 188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~ 267 (703)
T 3v97_A 188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR 267 (703)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence 4567899999999999999887642 3468999999 78
Q ss_pred HHhcCCC-------CCCceEEeCCCCC-CCC----CccEEEecchhcc-C-ChhHHHHHHHHHHHh---cCCCCCCceEE
Q 043623 229 VIADLPE-------TDNLKFIAGDMNQ-SIP----SADAFLFKLIFHD-Y-DDEVCLKLLKNCREA---VASSDGREKVI 291 (359)
Q Consensus 229 ~i~~a~~-------~~rv~~~~~d~~~-~~~----~~D~i~~~~vlh~-~-~d~~~~~iL~~~~~~---L~p~~~gG~ll 291 (359)
+++.|+. .++|++..+|+.+ ..| .||+|+++--... + ..++...+.+.+.+. +.| ||+++
T Consensus 268 av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~---g~~~~ 344 (703)
T 3v97_A 268 VIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFG---GWNLS 344 (703)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCT---TCEEE
T ss_pred HHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCC---CCeEE
Confidence 8877664 4569999999987 222 5999999843321 2 233444555555444 457 89998
Q ss_pred EEee
Q 043623 292 IVDI 295 (359)
Q Consensus 292 i~e~ 295 (359)
|+-.
T Consensus 345 ilt~ 348 (703)
T 3v97_A 345 LFSA 348 (703)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8743
No 277
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.91 E-value=2.7e-05 Score=71.13 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=53.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CC-----CCccEEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SI-----PSADAFL 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~-----~~~D~i~ 257 (359)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+|+++.+|+.+ +. ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999875 5679999999 666665543 3579999999876 21 2499998
Q ss_pred e
Q 043623 258 F 258 (359)
Q Consensus 258 ~ 258 (359)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
No 278
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.89 E-value=7.1e-06 Score=77.10 Aligned_cols=92 Identities=9% Similarity=0.053 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-----------------CCceEEeCCCCCC--
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----T-----------------DNLKFIAGDMNQS-- 249 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~-----------------~rv~~~~~d~~~~-- 249 (359)
++.+|||+|||+|.+++.++++.+..+++++|+ +++++.+++ . .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 468999999999999999999988889999999 666655442 1 2388999998761
Q ss_pred -CC-CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 250 -IP-SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 250 -~~-~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
.+ .||+|++.- . .. ...++..+.+.|+| ||.+++..
T Consensus 127 ~~~~~fD~I~lDP-~---~~--~~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GS--PMEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CC--HHHHHHHHHHhcCC---CCEEEEEe
Confidence 22 499999542 2 11 14678999999999 88776654
No 279
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.89 E-value=0.00018 Score=66.09 Aligned_cols=146 Identities=12% Similarity=0.209 Sum_probs=103.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHH-CCCCeEEEeechHHHhcCC-----------------------------CCCCceEEe
Q 043623 194 GLSSLVEVGGGTGSFARIISEA-FPSIKCSVLELPHVIADLP-----------------------------ETDNLKFIA 243 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~i~~a~-----------------------------~~~rv~~~~ 243 (359)
+...|+-+|||.=.....+... .++++++-+|.|++++.-+ ..++.+++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5689999999999999988875 3678999999998865311 157889999
Q ss_pred CCCCC--C---------CC-C-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHH
Q 043623 244 GDMNQ--S---------IP-S-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAK 310 (359)
Q Consensus 244 ~d~~~--~---------~~-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~ 310 (359)
.|+.+ . +. + .=++++-.+|.+++.+++.++|+.+.+..++ |.+++.|++.++. ++.. .
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d----~fg~-~ 240 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGD----RFGQ-I 240 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTS----HHHH-H
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCC----HHHH-H
Confidence 99976 1 11 1 4477888999999999999999999998865 7888889985432 1211 0
Q ss_pred HHhhhhhhhh-cCC--cccCHHHHHHHHHhcCCceeeEEec
Q 043623 311 LLYDALMMTC-VPG--IERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 311 ~~~~~~~~~~-~~g--~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
....+..... ..+ ...+.++..+.|.++||+.+++..+
T Consensus 241 M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 0111111100 011 2347899999999999999887765
No 280
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.88 E-value=1.3e-05 Score=70.88 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=68.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCceEEe-C-CCCC-CCCCc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----TDNLKFIA-G-DMNQ-SIPSA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~~rv~~~~-~-d~~~-~~~~~ 253 (359)
.++.+++. +.+..+|||+|||.|.++...++..+-.+++++|+ ......+.. ..++.... . |+.. +...+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 45566654 77788999999999999999888777667888887 222222211 22333332 2 3333 22249
Q ss_pred cEEEecchhccCC----hh-HHHHHHHHHHHhcCCCCCC--ceEEE
Q 043623 254 DAFLFKLIFHDYD----DE-VCLKLLKNCREAVASSDGR--EKVII 292 (359)
Q Consensus 254 D~i~~~~vlh~~~----d~-~~~~iL~~~~~~L~p~~~g--G~lli 292 (359)
|+|++-...+ -. |+ ....+|.-+.+.|+| | |.+++
T Consensus 158 DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~ 199 (282)
T 3gcz_A 158 DTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI 199 (282)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred CEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence 9999987775 22 22 233578888999999 7 77766
No 281
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.77 E-value=9.2e-05 Score=67.50 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=95.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCceEEeCCCCCCCC-----------C
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLP---------ETDNLKFIAGDMNQSIP-----------S 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~---------~~~rv~~~~~d~~~~~~-----------~ 252 (359)
.+...||++|||-=.....+.. .++++++-+|.|.+++..+ ..++.+++..|+.+.+. .
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 3457899999998887666542 2247999999998876433 26778899999876211 1
Q ss_pred ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHh-h-hhhhh-----h-cCCc
Q 043623 253 ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLY-D-ALMMT-----C-VPGI 324 (359)
Q Consensus 253 ~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~-~~g~ 324 (359)
.=++++..+||+++++++.++|+.+.+.+.| |..+++|...++.. .. ........ . +.-.. . .+-.
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~ 253 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGD-EW-REQMQLRFRRVSDALGFEQAVDVQELI 253 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCS-HH-HHHHHHHHHHHHC-----------CCT
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCc-ch-hHHHHHHHHHHHHHcCCcCCCCccccc
Confidence 4577888999999999999999999999888 45666676655431 10 00001011 1 00000 0 1112
Q ss_pred c-cC-HHHHHHHHHhcCCcee
Q 043623 325 E-RS-EKEWERLFFDAGFTSY 343 (359)
Q Consensus 325 ~-~t-~~e~~~ll~~aGf~~~ 343 (359)
. ++ .++..++|.+.||+.+
T Consensus 254 ~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 254 YHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCTTCCCHHHHHTTTTEEEE
T ss_pred cCCCChHHHHHHHHHCcCccc
Confidence 2 25 7899999999999987
No 282
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.76 E-value=1.6e-05 Score=74.84 Aligned_cols=93 Identities=8% Similarity=0.021 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CCC-ceEEeCCCCC--C--CC-CccEEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPS-IKCSVLEL-PHVIADLPE-------TDN-LKFIAGDMNQ--S--IP-SADAFL 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~i~~a~~-------~~r-v~~~~~d~~~--~--~~-~~D~i~ 257 (359)
.++.+|||++||+|.+++.++.+.++ .+++++|+ +.+++.+++ .++ ++++.+|.++ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35689999999999999999998665 57999999 777766653 345 9999999865 2 22 499998
Q ss_pred ecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 258 FKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 258 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+.- +.. ...++..+.+.|+| ||.|++..
T Consensus 131 lDP----~g~--~~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 131 LDP----FGT--PVPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp ECC----SSC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECC----CcC--HHHHHHHHHHHhCC---CCEEEEEe
Confidence 864 111 13578899999999 78666654
No 283
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.75 E-value=4.4e-05 Score=75.13 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC------------------CCeEEEeec-hHHHhcCCC------CC-----CceEE
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP------------------SIKCSVLEL-PHVIADLPE------TD-----NLKFI 242 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~i~~a~~------~~-----rv~~~ 242 (359)
.+..+|+|.+||+|.++..+.+... ..+++|+|+ +.+++.|+. .. ++.+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4467999999999999998876531 247999999 666665542 22 27889
Q ss_pred eCCCCC-C---CCCccEEEecchhccCCh------------hHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 243 AGDMNQ-S---IPSADAFLFKLIFHDYDD------------EVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 243 ~~d~~~-~---~~~~D~i~~~~vlh~~~d------------~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.+|.+. + .+.||+|+++--+..... ..-..++.++.+.|+| ||++.++-+
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence 999987 3 235999999754433211 1123689999999999 899987744
No 284
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.63 E-value=3.9e-05 Score=68.06 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=55.6
Q ss_pred HHHhcccccCCC--CeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHH-------HhcCC----C-C---CCceEEeCC
Q 043623 184 IIKDCKHIFDGL--SSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHV-------IADLP----E-T---DNLKFIAGD 245 (359)
Q Consensus 184 l~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------i~~a~----~-~---~rv~~~~~d 245 (359)
+++.+. +.++ .+|||+|||+|..+..++.+ +.+++++|. +.+ ++.++ . . .|++++.+|
T Consensus 78 l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp HHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 444443 4455 79999999999999999998 458999999 543 33222 1 1 579999999
Q ss_pred CCC---CCC-CccEEEecchhcc
Q 043623 246 MNQ---SIP-SADAFLFKLIFHD 264 (359)
Q Consensus 246 ~~~---~~~-~~D~i~~~~vlh~ 264 (359)
..+ ..+ .||+|++.-.+++
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHHhCcccCCEEEEcCCCCC
Confidence 875 233 4999999866654
No 285
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.61 E-value=0.00021 Score=66.12 Aligned_cols=69 Identities=9% Similarity=0.124 Sum_probs=55.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC-CCC--CccEEEecchh
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ-SIP--SADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~~--~~D~i~~~~vl 262 (359)
+.++.++||+||++|.++..++++ +.+|+++|..++-......++|+++.+|.++ ..+ .+|+|++-.+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 567899999999999999999987 5799999974443333447899999999998 322 49999987764
No 286
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.52 E-value=0.00023 Score=63.38 Aligned_cols=106 Identities=12% Similarity=0.136 Sum_probs=67.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-HHHhcCC--C--CCCc-eEEeC-CCCC-CCCCc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-HVIADLP--E--TDNL-KFIAG-DMNQ-SIPSA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~i~~a~--~--~~rv-~~~~~-d~~~-~~~~~ 253 (359)
.++.+. . .+.++.+|||+||++|.++..+++..+-..++++|+. ....... . ..++ .+..+ |+.. +...+
T Consensus 71 ~ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~ 148 (300)
T 3eld_A 71 RWLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS 148 (300)
T ss_dssp HHHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence 344444 2 3577889999999999999999987665578888873 2111111 0 2223 33333 4444 22359
Q ss_pred cEEEecchhccCCh----h-HHHHHHHHHHHhcCCCCCC-ceEEEE
Q 043623 254 DAFLFKLIFHDYDD----E-VCLKLLKNCREAVASSDGR-EKVIIV 293 (359)
Q Consensus 254 D~i~~~~vlh~~~d----~-~~~~iL~~~~~~L~p~~~g-G~lli~ 293 (359)
|+|++....+ -.. + ....+|.-+.+.|+| | |.+++-
T Consensus 149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~K 190 (300)
T 3eld_A 149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHV---NTENFCVK 190 (300)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEEE
T ss_pred CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEEE
Confidence 9999976665 221 1 224568888999999 8 877764
No 287
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.49 E-value=8.3e-05 Score=66.15 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=59.3
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-C-------C
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-S-------I 250 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~-------~ 250 (359)
..+++.+. ..++..+||++||.|.++..++++ +.+++++|. |.+++.+++ .+|++++.+|+.+ + .
T Consensus 12 ~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 12 QEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCC
Confidence 67777776 667889999999999999999998 679999999 777755432 2699999999976 2 1
Q ss_pred CCccEEEec
Q 043623 251 PSADAFLFK 259 (359)
Q Consensus 251 ~~~D~i~~~ 259 (359)
..+|.|++.
T Consensus 88 ~~vDgIL~D 96 (285)
T 1wg8_A 88 ERVDGILAD 96 (285)
T ss_dssp SCEEEEEEE
T ss_pred CCcCEEEeC
Confidence 348988874
No 288
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.49 E-value=0.00024 Score=71.86 Aligned_cols=100 Identities=10% Similarity=0.114 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC---CCeEEEeec-hHHHhcC--C----C------CCCceEEeCCCCCC----CCC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFP---SIKCSVLEL-PHVIADL--P----E------TDNLKFIAGDMNQS----IPS 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~i~~a--~----~------~~rv~~~~~d~~~~----~~~ 252 (359)
.++.+|+|.|||+|.++..+++..+ ..+++|+|+ +.+++.| + . .+...+...|+..+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999999876 357999999 6665554 1 0 12235555666652 225
Q ss_pred ccEEEecchhcc-CCh-hH-------------------------HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 253 ADAFLFKLIFHD-YDD-EV-------------------------CLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 253 ~D~i~~~~vlh~-~~d-~~-------------------------~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
||+|+++=-.-. +.. .. ...++.++.+.|+| ||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 999998744411 111 11 22467889999999 899877654
No 289
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.45 E-value=9.3e-05 Score=68.74 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCceEEeCCCCCC-------C
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE--------------TDNLKFIAGDMNQS-------I 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~--------------~~rv~~~~~d~~~~-------~ 250 (359)
.++++||-||+|.|..+.++++. |.-+++.+|+ |.+++.+++ .+|++++.+|..+- .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 34689999999999999999985 4478999999 778776542 35789999998651 1
Q ss_pred CCccEEEecchhcc-------CC-hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 251 PSADAFLFKLIFHD-------YD-DEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 251 ~~~D~i~~~~vlh~-------~~-d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
..||+|+.--.=.. .. ..-...+++.++++|+| ||.++.
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~ 329 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFT 329 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 24999987532111 11 11134688999999999 776554
No 290
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.43 E-value=3.7e-05 Score=72.58 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=52.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C----CCceEEeCCCCCC--C---CCccEEE
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE----T----DNLKFIAGDMNQS--I---PSADAFL 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~----~----~rv~~~~~d~~~~--~---~~~D~i~ 257 (359)
+.++.+|||+|||+|..+..+++. ..+++++|+ +.+++.++. . ++|+++.+|+.+. . ..||+|+
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~ 168 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEE
T ss_pred cCCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEE
Confidence 344789999999999999999886 458999999 777776653 1 5799999999872 2 2599999
Q ss_pred ec
Q 043623 258 FK 259 (359)
Q Consensus 258 ~~ 259 (359)
+.
T Consensus 169 lD 170 (410)
T 3ll7_A 169 VD 170 (410)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 291
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.37 E-value=9.4e-05 Score=72.72 Aligned_cols=97 Identities=15% Similarity=0.090 Sum_probs=67.8
Q ss_pred CeEEEEcCCchHHHHHHHHHCC---------------CCeEEEeec-hHHHhcCCC-------CCCceEEeCCCCC-C-C
Q 043623 196 SSLVEVGGGTGSFARIISEAFP---------------SIKCSVLEL-PHVIADLPE-------TDNLKFIAGDMNQ-S-I 250 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~i~~a~~-------~~rv~~~~~d~~~-~-~ 250 (359)
.+|+|.+||+|.++..+.+..+ ..+++|+|+ +.+++.|+. ..++.+..+|.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999998765432 468999999 666665542 2345558899876 3 2
Q ss_pred C--CccEEEecchhc--cCChh-------------------------HHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 251 P--SADAFLFKLIFH--DYDDE-------------------------VCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 251 ~--~~D~i~~~~vlh--~~~d~-------------------------~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
+ .||+|+++=-+. .|..+ .-..+++++.+.|+| ||++.++-+
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVlP 396 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLLA 396 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEec
Confidence 2 499999974332 22211 012578999999999 899877643
No 292
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.37 E-value=0.00029 Score=69.17 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC--------CCCceEEeCCCCC-CCC-----CccE
Q 043623 194 GLSSLVEVGGGTGSFARIISEAF---PSIKCSVLEL-PHVIADLPE--------TDNLKFIAGDMNQ-SIP-----SADA 255 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~i~~a~~--------~~rv~~~~~d~~~-~~~-----~~D~ 255 (359)
+..+|+|.+||+|.++..+.+.. +..+++|+|+ +.+...++. .+++.+..+|.+. ++| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 46799999999999999998875 3578999999 666665542 2467899999887 332 3999
Q ss_pred EEecchh-ccCChh--------------------HHHHHHHHHHHhcC-CCCCCceEEEEee
Q 043623 256 FLFKLIF-HDYDDE--------------------VCLKLLKNCREAVA-SSDGREKVIIVDI 295 (359)
Q Consensus 256 i~~~~vl-h~~~d~--------------------~~~~iL~~~~~~L~-p~~~gG~lli~e~ 295 (359)
|+++=-+ ..|... .-..++.++.+.|+ | ||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEec
Confidence 9987322 112100 01247999999999 9 999877644
No 293
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.23 E-value=0.0012 Score=56.73 Aligned_cols=105 Identities=11% Similarity=0.131 Sum_probs=71.0
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeech-HHHhc--C-CC--CCCceEEeC-CCCC-CCCCc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELP-HVIAD--L-PE--TDNLKFIAG-DMNQ-SIPSA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~i~~--a-~~--~~rv~~~~~-d~~~-~~~~~ 253 (359)
.++.+.+. +.+..+|||+||++|.++..++....-.++.++|+- .-.+. . +. -+.|+|+.+ |++. +...+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 45566664 777889999999999999988887655589999982 21111 1 11 477899999 9775 32349
Q ss_pred cEEEecchhccCC---hh-HHHHHHHHHHHhcCCCCCCceEEE
Q 043623 254 DAFLFKLIFHDYD---DE-VCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 254 D~i~~~~vlh~~~---d~-~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
|.++|--.-..-+ ++ ...++|.-+.+.|++ |.++|
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~----~~fc~ 184 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN----NQFCI 184 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc----CCEEE
Confidence 9998875542222 11 123467777888987 45555
No 294
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.11 E-value=0.0014 Score=55.58 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCceEEeCCCCCC-------------
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE---------TDNLKFIAGDMNQS------------- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~---------~~rv~~~~~d~~~~------------- 249 (359)
.+..+||||||| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 456899999985 55555665 45789999997 555444332 46899999985421
Q ss_pred -----------C---CCccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 250 -----------I---PSADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 250 -----------~---~~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
. ..||+|+.-.-. ....+..+.+.|+| ||.| |+|.+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~---GG~I-v~DNv 155 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITR---PVTL-LFDDY 155 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSS---CEEE-EETTG
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCC---CeEE-EEeCC
Confidence 1 249999987621 12446667788999 6765 55543
No 295
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.10 E-value=0.00014 Score=83.33 Aligned_cols=142 Identities=13% Similarity=0.125 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCCC---CCceEEeCCCCCC---CC-CccEEEecc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPS-----IKCSVLEL-PHVIADLPET---DNLKFIAGDMNQS---IP-SADAFLFKL 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~i~~a~~~---~rv~~~~~d~~~~---~~-~~D~i~~~~ 260 (359)
+..+||+||.|+|..+..+++.... .+++..|. +...+.+++. -.++....|..++ .+ .||+|++++
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4569999999999887777666432 25777787 4555555541 1222222233332 12 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCC
Q 043623 261 IFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGF 340 (359)
Q Consensus 261 vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf 340 (359)
+||..++. .+.|+++++.|+| ||++++.+......-.. ........ ...+....+.++|.++|+++||
T Consensus 1320 vl~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~~~~~~g~-----~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1320 ALATLGDP--AVAVGNMAATLKE---GGFLLLHTLLAGHPLGE-----MVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred cccccccH--HHHHHHHHHhcCC---CcEEEEEeccccccccc-----cccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence 99876654 4679999999999 99999887643110000 00000000 0011233477899999999999
Q ss_pred ceeeEEe
Q 043623 341 TSYKITP 347 (359)
Q Consensus 341 ~~~~~~~ 347 (359)
..+....
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 9876543
No 296
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.10 E-value=0.0017 Score=56.54 Aligned_cols=105 Identities=11% Similarity=0.161 Sum_probs=63.5
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHH--HhcCC-CCCCc---eEEeC-CCCCCCC-Cc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHV--IADLP-ETDNL---KFIAG-DMNQSIP-SA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~--i~~a~-~~~rv---~~~~~-d~~~~~~-~~ 253 (359)
.+|-+++ .++++.+|||+||+.|.++...++.-+-..+.+.++.-. +.-.. ....+ .|+.+ |+++..+ .+
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~ 140 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS 140 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence 4555554 378899999999999999999888521112233333111 11111 11455 44447 9987323 59
Q ss_pred cEEEecchhccCC----hhH-HHHHHHHHHHhcCCCCCCc-eEEE
Q 043623 254 DAFLFKLIFHDYD----DEV-CLKLLKNCREAVASSDGRE-KVII 292 (359)
Q Consensus 254 D~i~~~~vlh~~~----d~~-~~~iL~~~~~~L~p~~~gG-~lli 292 (359)
|+|++-..-. -+ |.. ...+|.-+.+.|+| || .+++
T Consensus 141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 9999876542 22 222 22357778889999 78 6666
No 297
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.07 E-value=0.0018 Score=57.44 Aligned_cols=105 Identities=8% Similarity=0.147 Sum_probs=68.6
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHH-Hh---cCCC--CCCceEEeC-CCCC-CCCCc
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHV-IA---DLPE--TDNLKFIAG-DMNQ-SIPSA 253 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-i~---~a~~--~~rv~~~~~-d~~~-~~~~~ 253 (359)
..+.+.+. +.+..+|||+||++|.++..++....-.+|.++|+-.. .+ ..+. -.-|+++.+ |++. +...+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 45555544 67778999999999999998877665557999998211 11 0111 234888888 8766 32348
Q ss_pred cEEEecchhccCChhH-----HHHHHHHHHHhcCCCCCC-ceEEE
Q 043623 254 DAFLFKLIFHDYDDEV-----CLKLLKNCREAVASSDGR-EKVII 292 (359)
Q Consensus 254 D~i~~~~vlh~~~d~~-----~~~iL~~~~~~L~p~~~g-G~lli 292 (359)
|++++--. ---+.+. ..++|.-+.+.|++ | |.++|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence 98887654 2222222 23467777899988 5 56665
No 298
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.03 E-value=0.00025 Score=48.98 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=45.0
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
+..|++.|...+.|+|..+||+.+|+ +...+.+.|..|...|++..+. .+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~--------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS--------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC--------CceEeeC
Confidence 44567777653468999999999999 5799999999999999998765 4788765
No 299
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.75 E-value=0.00065 Score=51.80 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=51.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhc--CCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSAL--EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
+..|+..|..+ ++.|+.+||+.+ ++ ++..+++-|+.|...|+|...+ .+.|++|+.+..+..
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~--------rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA--------NGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS--------TTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC--------CceEEECchHHHHHH
Confidence 34567777653 799999999999 99 6899999999999999999876 469999999884443
No 300
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.74 E-value=0.0044 Score=55.40 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEeec----hH-----------------------HHhcCCC-----
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAF-----PSIKCSVLEL----PH-----------------------VIADLPE----- 235 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~----~~-----------------------~i~~a~~----- 235 (359)
..+.+|||+|+..|..+..++... |+.+++++|. |+ ..+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346899999999999998887654 5788999994 11 0111111
Q ss_pred ---CCCceEEeCCCCC--C-CC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 236 ---TDNLKFIAGDMNQ--S-IP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 236 ---~~rv~~~~~d~~~--~-~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
.++|+++.||+.+ + .+ .+|++++-.-. -+.....|..+.+.|+| || ++|+|-.
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~p---GG-iIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSV---GG-YVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEE---EE-EEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCC---CE-EEEEcCC
Confidence 3899999999976 2 32 38888877522 13346789999999999 55 5555543
No 301
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.72 E-value=0.0023 Score=58.22 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=62.7
Q ss_pred HHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--CCCceEEeCCCCC-C-------
Q 043623 182 KLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAF-PSIKCSVLEL-PHVIADLPE--TDNLKFIAGDMNQ-S------- 249 (359)
Q Consensus 182 ~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~i~~a~~--~~rv~~~~~d~~~-~------- 249 (359)
.++++.+. ..++..+||..||.|..+..++++. |+.+++++|. |++++.++. .+|++++.+++.+ .
T Consensus 47 ~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 47 DEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp HHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcC
Confidence 77888776 6778999999999999999999985 8899999999 778776643 5789999998876 1
Q ss_pred CC-CccEEEecchh
Q 043623 250 IP-SADAFLFKLIF 262 (359)
Q Consensus 250 ~~-~~D~i~~~~vl 262 (359)
++ .+|.|++.--+
T Consensus 125 ~~~~vDgILfDLGV 138 (347)
T 3tka_A 125 LIGKIDGILLDLGV 138 (347)
T ss_dssp CTTCEEEEEEECSC
T ss_pred CCCcccEEEECCcc
Confidence 22 37777776443
No 302
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.72 E-value=0.0048 Score=55.59 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCchHHHHHH----HHHCCCCeE--EEeechHHHhcC------------------C--CCCCc--eEEeCC
Q 043623 194 GLSSLVEVGGGTGSFARII----SEAFPSIKC--SVLELPHVIADL------------------P--ETDNL--KFIAGD 245 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l----~~~~p~~~~--~~~D~~~~i~~a------------------~--~~~rv--~~~~~d 245 (359)
+.-+|+|+|-|+|...... .+..|+.++ +.++.. .++.. . ...+| ++..+|
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~-pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKE-LLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESS-CCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHH-HHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 3468999999999865433 345677654 545421 11100 0 03444 456788
Q ss_pred CCC---CCC--CccEEEecch-hccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhh
Q 043623 246 MNQ---SIP--SADAFLFKLI-FHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMT 319 (359)
Q Consensus 246 ~~~---~~~--~~D~i~~~~v-lh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
+.+ .++ .+|++++-.. -..-|+-....+++.+++.++| ||.+.-..
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTYt------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSYS------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEESC-------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEEe-------------------------
Confidence 765 233 3899887542 1222233345789999999999 77664210
Q ss_pred hcCCcccCHHHHHHHHHhcCCceeeEEecCCcceEEEEE
Q 043623 320 CVPGIERSEKEWERLFFDAGFTSYKITPLLGLRSFIEVY 358 (359)
Q Consensus 320 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 358 (359)
....+++-|+++||++.++...++-.-++.|.
T Consensus 227 -------aag~VRR~L~~aGF~V~k~~G~g~KReml~A~ 258 (308)
T 3vyw_A 227 -------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVAS 258 (308)
T ss_dssp -------CCHHHHHHHHHTTCEEEEEECC---CEEEEEE
T ss_pred -------CcHHHHHHHHHCCCEEEecCCCCCCCceeEEe
Confidence 23455788999999998887666655566554
No 303
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.57 E-value=0.0013 Score=48.65 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=50.7
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++..-.++.|+..| . ++.|..+||+.+++ ++..+.+.|+.|...|++.+.. +.|++++.+.
T Consensus 27 ~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~---------g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG---------ERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC---------CEEEECCCch
Confidence 44445566778888 5 78999999999999 6799999999999999999874 5899988654
No 304
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.46 E-value=0.0014 Score=46.54 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=47.0
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcc-hHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRN-CLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
-.|++.|... +|.|+.+||+.+|+ ... .+++.|..|...|+|...+. +...|.+|+.+.
T Consensus 14 ~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~------gRP~w~LT~~g~ 73 (79)
T 1xmk_A 14 EKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGT------TPPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECS------SSCEEEECHHHH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCC------CCCCeEeCHhHH
Confidence 3455566654 79999999999999 466 99999999999999986642 134899998765
No 305
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.42 E-value=0.046 Score=55.32 Aligned_cols=148 Identities=12% Similarity=0.149 Sum_probs=102.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC--------CCeEEEeechHHHhcCCC------------------------------
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFP--------SIKCSVLELPHVIADLPE------------------------------ 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~i~~a~~------------------------------ 235 (359)
+...||-+|||.=.....+...+| +++++-+|+|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 457899999999999999988755 778888998888643210
Q ss_pred CCCceEEeCCCCCC--C-----------CC-ccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCC
Q 043623 236 TDNLKFIAGDMNQS--I-----------PS-ADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKK 301 (359)
Q Consensus 236 ~~rv~~~~~d~~~~--~-----------~~-~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~ 301 (359)
+++.+++..|+.+. + ++ .=++++-.+|.+++.+++.++|+.+.+ + | ++.+++.|...+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 24889999999871 1 12 345677889999999999999999985 5 5 588899998876543
Q ss_pred CCchHHHHHHHhhhhhhhh---cCCcccCHHHHHHHHHhcCCceeeEEec
Q 043623 302 DKPEITEAKLLYDALMMTC---VPGIERSEKEWERLFFDAGFTSYKITPL 348 (359)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 348 (359)
..+ +... ....+..... ......+.++..+.|.+.||+.+....+
T Consensus 262 ~d~-f~~~-m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEP-FSKQ-MLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSH-HHHH-HHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCh-HHHH-HHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 332 2111 1111111100 0113347999999999999997766543
No 306
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.17 E-value=0.0021 Score=57.44 Aligned_cols=56 Identities=13% Similarity=0.294 Sum_probs=46.3
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|..++++.|+.|||+++|++ ..-+.|+|+.|...|+|.+++ ++.|++++.
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~---ksTv~RlL~tL~~~G~v~~~~--------~~~Y~LG~~ 88 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLP---KSSAHGLLAVMTELDLLARSA--------DGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC-----CHHHHHHHHHHTTSEEECT--------TSEEEECTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcC---HHHHHHHHHHHHHCCCEEECC--------CCcEEehHH
Confidence 44677776655689999999999994 688999999999999999986 478999985
No 307
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.14 E-value=0.0093 Score=55.23 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=72.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC------------CCCCCceEEeCCCCC--C-CC-Ccc
Q 043623 192 FDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL------------PETDNLKFIAGDMNQ--S-IP-SAD 254 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a------------~~~~rv~~~~~d~~~--~-~~-~~D 254 (359)
..++.+|||+.+|.|.=+.+++...++.++++.|+ +.-+..+ +...+|.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56778999999999999999999877778899998 3322221 124678888888776 2 23 499
Q ss_pred EEEec----c----hh-------ccCChhHH-------HHHHHHHHHhcCCCCCCceEEEEeeecCCC
Q 043623 255 AFLFK----L----IF-------HDYDDEVC-------LKLLKNCREAVASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 255 ~i~~~----~----vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gG~lli~e~~~~~~ 300 (359)
.|++- . ++ +.+..++. .++|.++.+.||| ||+|+-.-..+...
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~~ 290 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSHL 290 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCTT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCchh
Confidence 99852 1 11 12222221 3689999999999 88776555544433
No 308
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.88 E-value=0.017 Score=43.30 Aligned_cols=47 Identities=9% Similarity=0.256 Sum_probs=39.2
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.++.|+..|.. ++.|+.+||+.+|+ ++..+.+.|+.|...|++....
T Consensus 27 ~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 27 NRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 34455555654 68999999999999 6899999999999999999775
No 309
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=95.87 E-value=0.0073 Score=45.01 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=45.6
Q ss_pred HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
-.++.|+..|.. ++.|+.+||+.+|+ ++..+.+.|+.|...|+|..... +....|++++.
T Consensus 23 ~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-----g~~~~y~l~~~ 82 (102)
T 3pqk_A 23 PVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRN-----IKQIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECS-----SSCCEEEECSS
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-----CCEEEEEECcH
Confidence 344455556654 78999999999999 57899999999999999987752 11346777764
No 310
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.84 E-value=0.0034 Score=55.55 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=48.1
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|..++++.|..|||+++|+ +..-+.|+|+.|...|+|.+++. .+.|++++.
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-------~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-------ARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-------SSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCcEEcCHH
Confidence 4567777654478999999999999 57899999999999999999862 379999975
No 311
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.83 E-value=0.0043 Score=45.94 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=49.3
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
++.--.++.|+..|.+ ++.|+.+||+.+|+ ++..+.+.|+.|...|++..... +....|++++.
T Consensus 19 ~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-----g~~~~y~l~~~ 82 (98)
T 3jth_A 19 AMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE-----AQTVYYTLKSE 82 (98)
T ss_dssp HHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC-----TTCCEEEECCH
T ss_pred HcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-----CCEEEEEECHH
Confidence 3444456667777775 79999999999999 68999999999999999988752 11235777764
No 312
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.74 E-value=0.0055 Score=43.36 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=45.0
Q ss_pred HcCcccccccCC--CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 37 ELGIPDIIHKRG--RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 37 ~lglf~~L~~~~--~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
+..|++.|...+ .+.|+.|||+++|+ +...+++.|..|...|++...+. .++.|.+++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~------~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG------TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS------SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC------CCCceEecC
Confidence 445666665531 37999999999999 57899999999999999988752 146787765
No 313
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.73 E-value=0.011 Score=54.68 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCceEEeCCCCC-C-C----CC------------
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP---ETDNLKFIAGDMNQ-S-I----PS------------ 252 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~---~~~rv~~~~~d~~~-~-~----~~------------ 252 (359)
...|||||.|.|.++..|+++...-+++++++ +..+...+ ..++++++.+|+++ + + ..
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~~ 138 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSD 138 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTT
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhhHHHhhcccccccccccccc
Confidence 57899999999999999998743347888887 44443322 35799999999976 3 2 11
Q ss_pred ---ccEEEecchhccCChhHHHHHHHH
Q 043623 253 ---ADAFLFKLIFHDYDDEVCLKLLKN 276 (359)
Q Consensus 253 ---~D~i~~~~vlh~~~d~~~~~iL~~ 276 (359)
-.+.+..|.-++.+-+-..++|..
T Consensus 139 ~~~~~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 139 HINDKFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp SEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred cCCCceEEEEECCCchHHHHHHHHHHh
Confidence 024566776666655544455554
No 314
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.72 E-value=0.0063 Score=43.34 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS 105 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
....|++.|.. .+.|+.|||+++|+ +...+++.|..|...|++.....+ +-.|+++...
T Consensus 18 ~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~~~------PP~W~~~~~~ 76 (82)
T 1oyi_A 18 IVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSDDI------PPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECSSS------SCEEESCC--
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCCC------CCcceeccCc
Confidence 44556677775 34999999999999 579999999999999999988632 5688887653
No 315
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.68 E-value=0.0051 Score=53.77 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=49.1
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.|++.|..++++.|..|||+++|+ +...+.|+|+.|...|+|.+++. .+.|++++....|.
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-------~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-------AGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-------GCEEEECSHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-------CCeEEECHHHHHHH
Confidence 3456666554458999999999999 57899999999999999999852 37899998544333
No 316
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.66 E-value=0.0099 Score=42.41 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=44.3
Q ss_pred HcCcccccccC--CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchh
Q 043623 37 ELGIPDIIHKR--GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKL 107 (359)
Q Consensus 37 ~lglf~~L~~~--~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~ 107 (359)
+..|++.|.+. |.+.|+.+||+++|+ +...+++.|..|...|++...+. .++.|.+.+....
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~------~~~~W~i~~~~~~ 75 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG------TPPLWKIAVSTQA 75 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS------SSCEEEEC-----
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC------CCCeeEEeCcHHh
Confidence 34455566542 137999999999999 57899999999999999987642 1478888876543
No 317
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.66 E-value=0.0044 Score=47.12 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=46.8
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.++.|+..|.. ++.|..+||+.+|+ ++..+.+.|+.|...|++..... +....|.+++.+.
T Consensus 22 ~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~-----gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 22 TRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKV-----GREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECSHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEec-----CCEEEEEechHHH
Confidence 44556666643 78999999999999 68999999999999999987641 0023488887654
No 318
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.60 E-value=0.0062 Score=46.37 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCC--HHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCC
Q 043623 16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVT--LPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSR 92 (359)
Q Consensus 16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t--~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 92 (359)
...+++.+.+.|...+|.. |.. ++.+ +.||++.+ |+ ++..+.+.|+.|...|+|++...
T Consensus 17 ~~~~l~~l~~~wrl~IL~~---------L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~---- 78 (111)
T 3df8_A 17 SESVLHLLGKKYTMLIISV---------LGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG---- 78 (111)
T ss_dssp TSSTHHHHHSTTHHHHHHH---------HTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES----
T ss_pred HHHHHHHHcCccHHHHHHH---------Hhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec----
Confidence 3445666667776666553 332 6777 99999999 99 68999999999999999998741
Q ss_pred CCCCceEecCccchhhh
Q 043623 93 EEENEAYALTSASKLLL 109 (359)
Q Consensus 93 ~~~~~~~~~t~~~~~l~ 109 (359)
-...|++|+.|+.+.
T Consensus 79 --r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 --QITTYALTEKGMNVR 93 (111)
T ss_dssp --SSEEEEECHHHHHHH
T ss_pred --CcEEEEECccHHHHH
Confidence 025799999887555
No 319
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=95.58 E-value=0.007 Score=46.88 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 29 SIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.+|.--.++.|+..|... ++.|+.+||+.+|+ ++..+.+.|+.|...|++..... +....|++++.
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~-----gr~~~y~l~~~ 102 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE-----GKLALYSLGDE 102 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CCEEEESCH
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEE-----CCEEEEEECHH
Confidence 3444455567788888743 78999999999999 68999999999999999987752 11235777764
No 320
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=95.55 E-value=0.036 Score=49.21 Aligned_cols=92 Identities=12% Similarity=0.155 Sum_probs=62.3
Q ss_pred cCCCCeEEEEcC------CchHHHHHHHHHCCC-CeEEEeechHHHhcCCCCCCceEEeCCCCC-CC-CCccEEEecchh
Q 043623 192 FDGLSSLVEVGG------GTGSFARIISEAFPS-IKCSVLELPHVIADLPETDNLKFIAGDMNQ-SI-PSADAFLFKLIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~-~~-~~~D~i~~~~vl 262 (359)
.+.+.+|||+|+ -.|.. .+.+..|. ..++.+|+.++...+ + .++.+|..+ .. ..||+|++-..-
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda---~--~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA---D--STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS---S--EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC---C--eEEEccccccccCCCCCEEEecCCC
Confidence 467899999996 66773 33445786 699999986555322 1 458899766 22 349999875432
Q ss_pred c---cC------ChhHHHHHHHHHHHhcCCCCCCceEEEE
Q 043623 263 H---DY------DDEVCLKLLKNCREAVASSDGREKVIIV 293 (359)
Q Consensus 263 h---~~------~d~~~~~iL~~~~~~L~p~~~gG~lli~ 293 (359)
- +. ...-+..++.-+.+.|+| ||.+++-
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 1 11 222466778888999999 8888774
No 321
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.53 E-value=0.0066 Score=44.74 Aligned_cols=63 Identities=10% Similarity=0.150 Sum_probs=47.9
Q ss_pred HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623 34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS 105 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.-.++.|+..|.. +++.|..+||+.+|+ ++..+.+.|+.|...|++..... +....|++++.+
T Consensus 23 ~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~-----~r~~~y~l~~~~ 85 (99)
T 3cuo_A 23 HPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRD-----AQRILYSIKNEA 85 (99)
T ss_dssp SHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC-----SSCEEEEECCHH
T ss_pred ChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-----CCEEEEEEChHH
Confidence 3445666777765 368999999999999 68999999999999999998752 112357777653
No 322
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.49 E-value=0.0077 Score=52.87 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=46.8
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|..++++.|..|||+++|+ +...+.|+|+.|...|++.++. .+.|++++.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~--------~~~Y~lg~~ 66 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK--------DKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC--------CCcEEECHH
Confidence 4456666654458999999999999 5789999999999999999884 478999975
No 323
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.46 E-value=0.0057 Score=43.20 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=34.5
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|+|.|+.|||+.+|+ ++..+++-|..|...|++.+..
T Consensus 22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 589999999999999 5788999999999999999985
No 324
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.46 E-value=0.023 Score=42.80 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=43.0
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|+|..... +....|++++.
T Consensus 28 ~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~-----gr~~~y~l~~~ 84 (108)
T 2kko_A 28 LQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARRE-----GTRQYYRIAGE 84 (108)
T ss_dssp HHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEEE-----TTEEEEEESCH
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-----CCEEEEEEChH
Confidence 344445554 68999999999999 68999999999999999987752 01125777754
No 325
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.45 E-value=0.0082 Score=42.50 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=38.5
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
|.+.|.++ +.++++|||+.+++ ++.-++|-|+.|...|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 45667664 79999999999999 689999999999999999998
No 326
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=95.44 E-value=0.0086 Score=52.94 Aligned_cols=56 Identities=13% Similarity=0.304 Sum_probs=46.2
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|...+++.|+.|||+++|+ +..-+.|+|+.|...|++.++. .+.|++++.
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~--------~~~Y~lg~~ 81 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA--------DGSYSLGPE 81 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC--------CCeEEecHH
Confidence 3456666533378999999999999 5789999999999999999986 348999875
No 327
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.39 E-value=0.012 Score=46.11 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623 15 AQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE 93 (359)
Q Consensus 15 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 93 (359)
+....++++.+-|...+|... .. ++.+..||++.+ |+ ++..|.+.|+.|...|+|++..... +
T Consensus 15 pi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~--d 78 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQ--V 78 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECS--S
T ss_pred cHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCC--C
Confidence 567778888888887777643 22 789999999999 99 6899999999999999999885210 0
Q ss_pred CCCceEecCccchhhhc
Q 043623 94 EENEAYALTSASKLLLK 110 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~~ 110 (359)
.-.-.|++|+.|+.|..
T Consensus 79 ~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 79 PPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SCEEEEEECTTGGGGHH
T ss_pred CCeEEEEECHhHHHHHH
Confidence 00136999999886653
No 328
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.30 E-value=0.015 Score=43.85 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=54.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623 17 AHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE 95 (359)
Q Consensus 17 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 95 (359)
..+++.+.+-|...+|.. |.. ++.+..+||+.+ ++ ++..+.+.|+.|...|+|.+.... .|.-
T Consensus 5 ~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~--~d~r 68 (107)
T 2hzt_A 5 EATLEVIGGKWKXVILXH---------LTH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYN--QVPP 68 (107)
T ss_dssp HHHHHHHCSTTHHHHHHH---------HTT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEEC--SSSC
T ss_pred HHHHHHHcCccHHHHHHH---------HHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecC--CCCC
Confidence 345555556666555543 332 689999999999 99 689999999999999999987521 0011
Q ss_pred CceEecCccchhhh
Q 043623 96 NEAYALTSASKLLL 109 (359)
Q Consensus 96 ~~~~~~t~~~~~l~ 109 (359)
.-.|.+|+.|+.+.
T Consensus 69 ~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 69 KVEYELSEYGRSLE 82 (107)
T ss_dssp EEEEEECTTGGGGH
T ss_pred eEEEEECccHHHHH
Confidence 13699998876444
No 329
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.30 E-value=0.012 Score=51.96 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=49.7
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
+.|++.|..++++.|..|||+++|+ +...+.|+|+.|...|++.+++ +.|++++....|..
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~~---------~~Y~Lg~~~~~l~~ 77 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGSG---------GRWSLTPRVLSIGQ 77 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECGGGHHHHT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC---------CEEEEcHHHHHHHH
Confidence 4466777644478999999999999 5789999999999999999873 78999987554543
No 330
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.27 E-value=0.058 Score=52.69 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------CCCceEEeCCCCC-CCC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAF-------------PSIKCSVLEL-PHVIADLPE------TDNLKFIAGDMNQ-SIP 251 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~i~~a~~------~~rv~~~~~d~~~-~~~ 251 (359)
..+.+|+|-.||+|.++....+.. ...++.|+|+ +.+...++. .+.-.+..+|.+. +..
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 445699999999999998776532 1346899998 555554442 2334567788775 321
Q ss_pred ------CccEEEecchhcc-CC-------------hhHHHHHHHHHHHhcC-------CCCCCceEEEEee
Q 043623 252 ------SADAFLFKLIFHD-YD-------------DEVCLKLLKNCREAVA-------SSDGREKVIIVDI 295 (359)
Q Consensus 252 ------~~D~i~~~~vlh~-~~-------------d~~~~~iL~~~~~~L~-------p~~~gG~lli~e~ 295 (359)
.||+|+.+=-+-. +. .+.-..++..+.+.|+ | ||++.++-+
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVlP 363 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVVP 363 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEEE
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEec
Confidence 3999998754421 11 1112346778888886 6 899877644
No 331
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.25 E-value=0.0082 Score=43.38 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=38.8
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|.+.|.+. +.++++|||+.+++ ++.-++|.|+.|...|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 45667664 79999999999999 6899999999999999999984
No 332
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=95.25 E-value=0.0076 Score=46.35 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=50.9
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.+|.--.++.|+..|.. +|.++.+||+.+|+ ++..+.+.|+.|...|+|..... +-.-.|++++.+.
T Consensus 13 ~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~-----gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQ-----GRVRTCAIEKEPF 79 (118)
T ss_dssp HHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECSHHH
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEec-----CCEEEEEECHHHH
Confidence 34444556667777764 79999999999999 68999999999999999987752 1124688887543
No 333
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.21 E-value=0.0082 Score=46.18 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=46.1
Q ss_pred HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
--.++.|+..|.. ++.+..+||+.+|+ ++..+.+.|+.|...|++..... +..-.|++++.
T Consensus 20 ~~~r~~IL~~L~~--~~~~~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~-----gr~~~y~l~~~ 80 (118)
T 2jsc_A 20 DPTRCRILVALLD--GVCYPGQLAAHLGL---TRSNVSNHLSCLRGCGLVVATYE-----GRQVRYALADS 80 (118)
T ss_dssp SHHHHHHHHHHHT--TCCSTTTHHHHHSS---CHHHHHHHHHHHTTTTSEEEEEC-----SSSEEEEESSH
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE-----CCEEEEEEChH
Confidence 3345556666664 68999999999999 68999999999999999987642 11235777764
No 334
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.20 E-value=0.035 Score=43.71 Aligned_cols=93 Identities=15% Similarity=0.231 Sum_probs=57.3
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHH-----HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee
Q 043623 11 ELFQAQAHLYKHVLSYMSSIFLK-----CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST 85 (359)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~~l~-----~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 85 (359)
+......++...+...+...+-. ...++.++..|..+ ++.|..+||+.+++ ++..+.+.++.|...|+|.+
T Consensus 8 ~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r 83 (142)
T 3ech_A 8 DLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRR 83 (142)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEee
Confidence 34444444555444443333332 35566778888765 68999999999999 67999999999999999998
Q ss_pred ccccCCCCCCCceEecCccchhhh
Q 043623 86 TKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
..... |.-.-.+.+|+.|+.+.
T Consensus 84 ~~~~~--DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 84 ERNPS--DQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp ------------CCEECHHHHHHH
T ss_pred ccCCC--CCCeeeeEECHHHHHHH
Confidence 74200 00012367888777444
No 335
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.18 E-value=0.015 Score=42.90 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=46.8
Q ss_pred cccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 40 IPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
|+..+.. + .+..+||..+++ +++.++..++.|...|++.... +.|.+|+.|..+.
T Consensus 13 IL~~i~~--~-~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~---------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 13 ILEACKS--G-SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG---------KQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHTT--C-BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECHHHHHHH
T ss_pred HHHHHHc--C-CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC---------CeeEEChhHHHHH
Confidence 4455543 4 899999999999 6899999999999999999985 6799999998544
No 336
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.14 E-value=0.0086 Score=48.30 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 28 SSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.+.+|.--.++.|+..|.. ++.|+.+||+.+|+ ++..+.+.|+.|...|+|..... +-.-.|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~-----Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKD-----GRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-----CCEEEEEEChHHH
Confidence 4566777778889999975 79999999999999 68999999999999999998752 1123688887643
No 337
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=94.96 E-value=0.013 Score=52.00 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=46.8
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSAS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|..++++.|+.|||+++|+ +...+.|+|+.|...|++.+++ +.|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~~---------~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATDG---------SAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEESS---------SEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecC---------CEEEEcHHH
Confidence 4466777543478999999999999 5789999999999999999873 789998853
No 338
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.89 E-value=0.014 Score=46.11 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=44.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|..+||+.+++ ++..+.+.|+.|...|+|.+.. ...|.+|+.|..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~--------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee--------CceEEEchhHHHHH
Confidence 68999999999999 6899999999999999999886 46899999887554
No 339
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=94.85 E-value=0.028 Score=43.77 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=38.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
++.|.++||+++++ ++..++++|+.|...|++..... .++.|+++..
T Consensus 25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~g------~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIRG------AYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecCC------CCCceEeCCC
Confidence 78999999999999 57999999999999999987741 1367887653
No 340
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.81 E-value=0.035 Score=44.10 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=47.6
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|...+++.|..+||+.+++ ++..+.++++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~--D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDPS--DRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC-------------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCcc--ccchheeeECHHHHHHH
Confidence 345566677544467899999999999 6899999999999999999874200 00011377888877554
No 341
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.78 E-value=0.026 Score=40.10 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=37.4
Q ss_pred CcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 39 GIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 39 glf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
.|++.|... ++.|..|||+.+|+ ++..+++.|+.|...|++...
T Consensus 4 ~Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 355666553 68999999999999 689999999999999999854
No 342
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.65 E-value=0.017 Score=41.23 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=40.8
Q ss_pred HcCcccccccCC-CCCCHHHHHhhc-----CCCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRG-RPVTLPELVSAL-----EFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~-~~~t~~~LA~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+..|++.|..++ ++.|++||++.+ ++ +..-+.|.|+.|...|+|.+..
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 455777776544 689999999999 88 6899999999999999999874
No 343
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=94.60 E-value=0.039 Score=44.81 Aligned_cols=46 Identities=15% Similarity=0.400 Sum_probs=39.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
++.|.++||+.+++ ++..++++|..|...|+|..... .+|.|+++.
T Consensus 43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~rG------~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIRG------AHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECS------TTCEEEECS
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEecC------CCCceEecC
Confidence 68999999999999 58999999999999999997752 246788764
No 344
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=94.58 E-value=0.021 Score=44.17 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=41.9
Q ss_pred HHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 34 CAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
--.++.|+..|.. ++.++.+||+.+|+ ++..+.+.|+.|...|++....
T Consensus 45 ~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 45 DPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp CHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3346677777864 68999999999999 6899999999999999998765
No 345
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.57 E-value=0.081 Score=41.29 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=51.5
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.-.-.|.+|+.|..+.
T Consensus 32 ~~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~--~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNP--DNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS--SSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC--CCCCeeEEEECHHHHHHH
Confidence 345567777654 68999999999999 689999999999999999987521 011123588899888555
No 346
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=94.53 E-value=0.015 Score=50.76 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=50.4
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.|.|+.|...|++.+.+. ...|.+|+.+..+.
T Consensus 154 ~~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-------~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 154 EMKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-------DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-------TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-------ccEEEECHHHHHHH
Confidence 34455565443 68999999999999 68999999999999999998742 46899999887554
No 347
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=94.52 E-value=0.045 Score=41.06 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCC
Q 043623 14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSR 92 (359)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 92 (359)
-+...+++.+.+.|...+|.. |.. ++.+..+|++.+ |+ ++..+.+.|+.|...|+|.+.....
T Consensus 13 c~~~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~-- 76 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIFQ---------INR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPE-- 76 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHHH---------HTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECS--
T ss_pred CCHHHHHHHHcCccHHHHHHH---------HHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCC--
Confidence 345666777777777665543 332 689999999999 49 6899999999999999999875210
Q ss_pred CCCCceEecCccchhhh
Q 043623 93 EEENEAYALTSASKLLL 109 (359)
Q Consensus 93 ~~~~~~~~~t~~~~~l~ 109 (359)
+.-.-.|.+|+.|+.+.
T Consensus 77 d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 77 VPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SSCEEEEEECHHHHTTH
T ss_pred CCCeeEEEECccHHHHH
Confidence 00113699999876444
No 348
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=94.43 E-value=0.022 Score=44.66 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCC
Q 043623 14 QAQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSR 92 (359)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 92 (359)
-+...+++++.+.|...+|.. |.. ++.+..+|++.+ |+ ++..+.+.|+.|...|+|.+....+
T Consensus 23 c~~~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~~-- 86 (131)
T 1yyv_A 23 CPSREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYPV-- 86 (131)
T ss_dssp CTHHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECS--
T ss_pred CCHHHHHHHHcCCcHHHHHHH---------HHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecCC--
Confidence 356667777777777665544 333 689999999999 79 6899999999999999999875210
Q ss_pred CCCCceEecCccchhhh
Q 043623 93 EEENEAYALTSASKLLL 109 (359)
Q Consensus 93 ~~~~~~~~~t~~~~~l~ 109 (359)
+.-.-.|.+|+.|+.+.
T Consensus 87 d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 87 VPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCCeEEEEECccHHHHH
Confidence 00013699999887554
No 349
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.39 E-value=0.017 Score=43.88 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhc-CCCCCCcchHHHHHHHHhccCceeeccccCCCC
Q 043623 15 AQAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSAL-EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE 93 (359)
Q Consensus 15 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 93 (359)
+...+++++.+.|...+|.. |.. ++.+..+||+.+ ++ ++..+.+.|+.|...|+|.+.... .|
T Consensus 11 ~~~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~--~d 74 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLMDE---------LFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFN--EL 74 (112)
T ss_dssp HHHHHHHTTCSTTHHHHHHH---------HHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEEC--CS
T ss_pred CHHHHHHHHcCccHHHHHHH---------HHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecC--CC
Confidence 45556666666666555543 333 689999999999 99 689999999999999999987521 00
Q ss_pred CCCceEecCccchhhh
Q 043623 94 EENEAYALTSASKLLL 109 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~ 109 (359)
.-.-.|.+|+.|..+.
T Consensus 75 ~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 75 PPRVEYTLTPEGYALY 90 (112)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECHhHHHHH
Confidence 0113599999887544
No 350
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.24 E-value=0.025 Score=45.18 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=56.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCC
Q 043623 16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEE 95 (359)
Q Consensus 16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 95 (359)
..+.++.+.+.|...+|... .. ++.+..||++.+++ ++..+.+.|+.|...|++++.... .+.
T Consensus 14 ~~~~l~~l~~~w~l~IL~~L---------~~--g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~--~d~- 76 (146)
T 2f2e_A 14 VARPLDVIGDGWSMLIVRDA---------FE--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAE--SGS- 76 (146)
T ss_dssp TTTTHHHHCSSSHHHHHHHH---------HT--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECS--SSS-
T ss_pred HHHHHHHhCCchHHHHHHHH---------Hh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecC--CCC-
Confidence 34456666666666655443 22 68999999999999 689999999999999999987521 111
Q ss_pred CceEecCccchhhh
Q 043623 96 NEAYALTSASKLLL 109 (359)
Q Consensus 96 ~~~~~~t~~~~~l~ 109 (359)
.-.|++|+.|+.+.
T Consensus 77 ~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 77 HQEYRLTDKGRALF 90 (146)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eEEEEECchHHHHH
Confidence 24799999876544
No 351
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.14 E-value=0.046 Score=43.50 Aligned_cols=46 Identities=13% Similarity=0.292 Sum_probs=39.3
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
++.|.++||+.+++ ++..++++|..|...|+|.... |.+|.|+++.
T Consensus 27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~r------G~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVR------GAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECS------SSSSEEEESS
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecC------CCCCCeeecC
Confidence 58999999999999 5899999999999999998764 1246788865
No 352
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=94.11 E-value=0.014 Score=43.03 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=51.4
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccch
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASK 106 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.++..-.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|++...... .++....|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~--~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVI--ADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEEC--SSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC--CCcceEEEEECHHHH
Confidence 344455566677777532 68999999999999 689999999999999999965310 011124688888765
No 353
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.09 E-value=0.1 Score=41.45 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=48.8
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.|+..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+..... |.-.-.+.+|+.|..+.
T Consensus 40 ~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~--d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 40 LFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTK--DRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS--CTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCC--CCceEEEEECHHHHHHH
Confidence 4466677653 68999999999999 6899999999999999999875200 00112477888776544
No 354
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.06 E-value=0.03 Score=43.99 Aligned_cols=50 Identities=10% Similarity=0.222 Sum_probs=43.6
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+++.|..+||+.+++ ++..+.+.++.|...|+|.+.. ..|.+|+.+..+.
T Consensus 29 ~~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~---------~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE---------DGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC---------CeEEEChhHHHHH
Confidence 378999999999999 6899999999999999999874 5799998876443
No 355
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=93.97 E-value=0.1 Score=41.78 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=48.4
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|...+++.|..+||+.+++ ++..+.++++.|...|+|.+.... .|.-.-.+.+|+.|..+.
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~--~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSA--DDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC----------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC--CCCCeEEEEEChhHHHHH
Confidence 45677788322478999999999999 578999999999999999987410 000012377888877544
No 356
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=93.96 E-value=0.038 Score=44.31 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=45.1
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.+|++.+.+... . +++.|.++||+.+++ ++..++++|..|...|+|.... | .|.|+++..
T Consensus 15 yAl~~L~~La~~---~--~~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~r------G-~GGy~L~~~ 74 (149)
T 1ylf_A 15 IAVHILSILKNN---P--SSLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR------G-PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHS---C--GGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEcc------C-CCceEeCCC
Confidence 455555555432 2 268999999999999 5799999999999999998775 2 567888754
No 357
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=93.95 E-value=0.06 Score=43.81 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=46.0
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.+|++.+.|..- . ++++|.++||+.+++ ++..+++++..|...|+|.... |-+|.|++...
T Consensus 13 yAlr~l~~La~~---~--~~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~r------G~~GGy~Lar~ 73 (162)
T 3k69_A 13 VAVHSILYLDAH---R--DSKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTV------GKNGGYQLDLA 73 (162)
T ss_dssp HHHHHHHHHHTT---T--TSCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEEC------STTCEEECCSC
T ss_pred HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec------CCCCCeEecCC
Confidence 455555544432 2 368999999999999 5799999999999999998764 22467988753
No 358
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=93.94 E-value=0.036 Score=44.05 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=49.0
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|..+ ++.|..+||+.+++ ++..+.++++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~--D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQS--DKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC-----------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCC--CcceeeeeECHHHHHHH
Confidence 345667777654 78999999999999 6899999999999999999874210 00113588888877554
No 359
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=93.92 E-value=0.033 Score=50.09 Aligned_cols=40 Identities=15% Similarity=0.005 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLP 234 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~ 234 (359)
.++..|||++||+|..+..+++. +.+++++|+ +.+++.++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 46789999999999999998886 468999999 77776655
No 360
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.90 E-value=0.028 Score=41.40 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=47.9
Q ss_pred cCcccccccCCCCCCHHHH----HhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRGRPVTLPEL----VSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~L----A~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..|... ++.|..+| |+.+++ ++..+.+.++.|...|++.+.... ....|.+|+.|+.+.
T Consensus 11 ~~iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~-----r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 11 AIVLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER-----GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC-----CceEEEECHHHHHHH
Confidence 3445555543 68999999 999999 689999999999999999986410 124688888887554
No 361
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=93.89 E-value=0.16 Score=40.14 Aligned_cols=67 Identities=9% Similarity=0.174 Sum_probs=46.1
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..| . +++.|..+||+.+++ ++..+.+.++.|...|++.+....+..|.-.-.+.+|+.|..+.
T Consensus 41 ~~iL~~l-~-~~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 41 SHVLNML-S-IEALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHH-H-HSCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHH-H-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 4477777 4 379999999999999 67999999999999999997310000000112467787777544
No 362
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.84 E-value=0.15 Score=40.38 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=49.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... .|.-.-.+.+|+.|+.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~--~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNP--EHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCS--SSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCc--ccccceeeEEChhhHHHH
Confidence 44567777654 68999999999999 689999999999999999987420 001112578888777444
No 363
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=93.83 E-value=0.04 Score=44.51 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=50.8
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|..+ ++.|..+||+.+++ ++..+.++++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~--DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDPT--HGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECCS--SSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCCC--cCCeeEeEECHhHHHHH
Confidence 34567777664 68999999999999 6799999999999999999875210 00012588898887555
No 364
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=93.81 E-value=0.033 Score=38.58 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=46.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
+-.|++.|.++|.|++..+||+.+|+ +...+.+.|..|-..|.+.... .-.|.++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk--------RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS--------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC--------CceeeCC
Confidence 34566777766799999999999999 6899999999999999999886 3567765
No 365
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=93.78 E-value=0.084 Score=41.49 Aligned_cols=67 Identities=9% Similarity=0.175 Sum_probs=49.9
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++ |..+||+.+++ ++..+.+.++.|...|++.+..... |.-.-.+.+|+.|+.+.
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~--D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDSK--DRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCCC--CCceEEEEECHHHHHHH
Confidence 456677778764 45 99999999999 6899999999999999999875200 00001488898887554
No 366
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=93.67 E-value=0.089 Score=42.32 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=49.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|..+ ++.|..+||+.+++ ++..+.++++.|...|+|.+.... .|.-.-.+.+|+.|+.+.
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~--~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISD--ADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC-----CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCc--ccCCeeEeeECHHHHHHH
Confidence 34467777654 68999999999999 689999999999999999987521 001113578888877554
No 367
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.53 E-value=0.15 Score=41.37 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=50.6
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 46 ~~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~--DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 46 PQFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHPT--SRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS--CSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCCC--CCCeeEEEECHHHHHHH
Confidence 345667777654 68999999999999 6899999999999999999864210 00112478888877544
No 368
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=93.40 E-value=0.088 Score=38.68 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=44.1
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+++.+..+||+.+++ +...+.|.|..|...|+|..... . .+-+...+|+.|+.+.
T Consensus 34 g~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~---~-D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE---A-DGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC---T-TSCEEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC---C-CCceeEEECHHHHHHH
Confidence 378999999999999 68999999999999999998641 1 2234578888877444
No 369
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=93.39 E-value=0.085 Score=41.69 Aligned_cols=67 Identities=7% Similarity=0.157 Sum_probs=49.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.-.-.+.+|+.|..+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~--~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDE--HDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC--C---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC--CCcceeEeEECHhHHHHH
Confidence 34566677654 68999999999999 689999999999999999986410 000112478888877544
No 370
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.36 E-value=0.08 Score=45.16 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=46.1
Q ss_pred CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 48 GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 48 ~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
+++.+..+||+.+++ ++..+.+.++.|...|++.+.. ...+.+|+.|+.+..
T Consensus 18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK--------KAGYLLTDLGLKLVS 69 (214)
T ss_dssp CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHHH
T ss_pred CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec--------CCCeEECHHHHHHHH
Confidence 378999999999999 6899999999999999999986 478999998875553
No 371
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.31 E-value=0.034 Score=45.27 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=49.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|...+++.|..+||+.+++ +...+.++++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~--DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCAS--DRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCC--CCCeeEEEECHHHHHHH
Confidence 45566667653468999999999999 6899999999999999999874200 00013578888887555
No 372
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.29 E-value=0.074 Score=42.36 Aligned_cols=59 Identities=8% Similarity=0.220 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 29 SIFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
..+|++.+.+..- . ++ |.++||++.++ ++..++++|..|...|||.... | .|.|+++..
T Consensus 9 ~yAl~~L~~La~~----~--~~-s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~r------G-~GGy~Lar~ 67 (145)
T 1xd7_A 9 AVAIHILSLISMD----E--KT-SSEIIADSVNT---NPVVVRRMISLLKKADILTSRA------G-VPGASLKKD 67 (145)
T ss_dssp HHHHHHHHHHHTC----S--CC-CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS------S-SSSCEESSC
T ss_pred HHHHHHHHHHHhC----C--CC-CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeec------C-CCCceecCC
Confidence 3455555554321 1 35 99999999999 5799999999999999998775 2 567888653
No 373
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=93.22 E-value=0.032 Score=43.62 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=49.6
Q ss_pred HcCcccccccCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRG-RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~-~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|..++ ++.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.-.-.+.+|+.|+.+.
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~--~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDA--QDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC--C--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCC--CCCCeeeeEECHHHHHHH
Confidence 445566665543 48999999999999 689999999999999999987420 000113577888887555
No 374
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.15 E-value=0.052 Score=43.55 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=43.6
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|..+||+.+++ ++..+++.|+.|...|+|.+.. +..+.+|+.|..+.
T Consensus 53 ~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~--------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 53 GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP--------WRGVFLTAEGEKLA 102 (155)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET--------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec--------CCceEEChhHHHHH
Confidence 67999999999999 6899999999999999999875 46788998877544
No 375
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=93.12 E-value=0.034 Score=40.68 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=44.6
Q ss_pred ccccccCCCCCCHHHHHhhcCCCCCCcch-HHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 41 PDIIHKRGRPVTLPELVSALEFQPNKRNC-LRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~~LA~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+..|...+.+.|..+||+.+++ ++.. +.+.++.|...|++..+.. |.-.-.+.+|+.|+.+.
T Consensus 21 L~~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~----drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 21 LLEFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETL----SYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEE----ETTEEEEEECHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCC----CCCeEEEEECHhHHHHH
Confidence 3344443237999999999999 6788 9999999999999994421 00013578888877554
No 376
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=93.12 E-value=0.041 Score=43.55 Aligned_cols=68 Identities=13% Similarity=0.261 Sum_probs=48.4
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... .|.-.-.+.+|+.|+.+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHS--EDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCC--CCcceeEeEECHhHHHHH
Confidence 445566777664 68999999999999 689999999999999999987410 000113577888776544
No 377
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.11 E-value=0.033 Score=43.05 Aligned_cols=48 Identities=10% Similarity=0.237 Sum_probs=39.6
Q ss_pred HcCcccccccCCCC-CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRP-VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~-~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+..|+..|..+++| .|+.+||+.+++ +...+.|.|+.|...|+|.+..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 44456666554456 999999999999 6899999999999999999863
No 378
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=93.06 E-value=0.044 Score=42.71 Aligned_cols=67 Identities=13% Similarity=0.295 Sum_probs=49.3
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.-.-.+.+|+.|+.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~--~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNP--NDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECS--SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCC--CCCceeEEEECHHHHHHH
Confidence 45566677654 68999999999999 578999999999999999986410 001112477888877544
No 379
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.05 E-value=0.041 Score=43.05 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=48.8
Q ss_pred HcCcccccccCCC-CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGR-PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~-~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|...++ +.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.-.-.+.+|+.|..+.
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~--~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSG--KDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS--SCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCC--cCCCeeeeEECHHHHHHH
Confidence 3445666665422 8999999999999 689999999999999999987420 000112577888776444
No 380
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=93.01 E-value=0.037 Score=43.48 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=49.4
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|..+ ++.|..+||+.+++ ++..+.++++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~--D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEK--DERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCC--CcceeeeeEChHHHHHH
Confidence 35566677653 78999999999999 6899999999999999999874210 00113578888887554
No 381
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=93.01 E-value=0.2 Score=39.74 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=49.5
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee--ccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST--TKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|..+ ++.|..+||+.+++ ++..+.+.++.|...|+|.+ .... .|.-.-.+.+|+.|..+.
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~--~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIP--NDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--C--TTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCC--CCCceeEeEECHHHHHHH
Confidence 45567777664 68999999999999 68999999999999999998 4310 001112588898887544
No 382
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=92.98 E-value=0.049 Score=42.94 Aligned_cols=68 Identities=9% Similarity=0.122 Sum_probs=50.7
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|..+ ++.|..+||+.+++ ++..+.++++.|...|+|.+.... .|.-.-.+.+|+.|+.+.
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGE--QDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCS--SCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCC--CCCceeeeeEChhHHHHH
Confidence 345567777554 68999999999999 689999999999999999986420 000113588898887554
No 383
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.96 E-value=0.034 Score=43.54 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=49.5
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..... |.-.-.+.+|+.|+.+.
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~~~--d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPK--DQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCC--CCCeeEEEECHHHHHHH
Confidence 345566677654 68999999999999 6899999999999999999874100 00012377888777544
No 384
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=92.92 E-value=0.05 Score=41.55 Aligned_cols=48 Identities=17% Similarity=0.372 Sum_probs=40.7
Q ss_pred HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
-.++.|+..|.. ++.|..+||+.+++ ++..+.+.|+.|...|++....
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 445666677765 58999999999999 6899999999999999998764
No 385
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.92 E-value=0.066 Score=42.20 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=50.6
Q ss_pred HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
..++.++..|..++++.|..+||+.+++ ++..+.+.++.|...|+|.+.... .|.-.-.+.+|+.|..+.
T Consensus 35 ~~~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~--~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADP--QDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCC--CCCCceeeEECHHHHHHH
Confidence 3456677777651278999999999999 689999999999999999987410 001112478888877544
No 386
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=92.86 E-value=0.094 Score=41.92 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=48.3
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..|...+++.+..+||+.+++ ++..+.++++.|...|+|.+..... |.=.-.+.+|+.|+.+.
T Consensus 34 ~~vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~~~--DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 34 WVTLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTSAN--DRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS--CTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecCCC--CCcchhhhcCHHHHHHH
Confidence 3345555544466788999999999 6899999999999999999875210 00012478898887555
No 387
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=92.83 E-value=0.07 Score=38.98 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=40.4
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.|..+||+.+++ ++..+.++++.|...|+|..... .-...+++|+.|..+.
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~d-----~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECELE-----GRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCCC-----CCeEEEEEChhHHHHH
Confidence 4899999999999 68999999999999999943320 0012588998887554
No 388
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=92.81 E-value=0.039 Score=43.43 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=50.2
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+.... .|.-.-.+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~--~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREIST--EDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC------CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCC--ccCceeeeeECHHHHHHH
Confidence 345566777654 78999999999999 689999999999999999987421 001123578888877554
No 389
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=92.72 E-value=0.049 Score=42.48 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..... |.-.-.+.+|+.|..+.
T Consensus 39 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~--d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPD--DGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCC--CCCeeeeEECHhHHHHH
Confidence 356677777654 68999999999999 6899999999999999999863100 00012478888877544
No 390
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=92.59 E-value=0.085 Score=41.71 Aligned_cols=67 Identities=9% Similarity=0.146 Sum_probs=41.8
Q ss_pred cCcccccccCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRG-RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~-~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..|..++ ++.|..+||+.+++ ++..+.+.++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~--DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPEN--NARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC----------CCCCBCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCC--CchhheeeECHHHHHHH
Confidence 44566665532 68999999999999 6789999999999999999874200 00012467787777544
No 391
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=92.56 E-value=0.088 Score=41.32 Aligned_cols=66 Identities=9% Similarity=0.127 Sum_probs=49.0
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|. . ++.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.-.-.+.+|+.|..+.
T Consensus 39 ~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~--~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 39 DFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDR--EDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECS--SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCC--CCCceEEEEECHHHHHHH
Confidence 455666776 3 79999999999999 689999999999999999987420 001112478888777444
No 392
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=92.54 E-value=0.077 Score=42.30 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=49.3
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|+|.+.... .|.-.-.+.+|+.|+.+.
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~--~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADA--KDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC--------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCC--CcCCeeEeEECHHHHHHH
Confidence 45567777654 68999999999999 689999999999999999986410 000113478888877544
No 393
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=92.51 E-value=0.053 Score=42.20 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=48.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..... |.-.-.+.+|+.|..+.
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~~~--d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQDPE--NRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCC--CceeEEeeECHhHHHHH
Confidence 34456666553 78999999999999 6899999999999999999864100 00012377888776444
No 394
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.41 E-value=0.11 Score=40.81 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=48.5
Q ss_pred cCccccc-ccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDII-HKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L-~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..| .. +++.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.-.-.+.+|+.|..+.
T Consensus 40 ~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~--~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 40 WLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVA--EDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCB--TTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCC--cccCeeeeEECHhHHHHH
Confidence 4456666 43 378999999999999 689999999999999999987410 001112477888776444
No 395
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=92.32 E-value=0.069 Score=41.55 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=48.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|..+ ++.|..+||+.+++ ++..+.+.++.|...|++.+..... |.-.-.+.+|+.|+.+.
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~--d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPN--DKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTT--CSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCcc--cCceeEeEEChhHHHHH
Confidence 34455666543 68999999999999 6899999999999999999864200 00112478888877554
No 396
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=92.31 E-value=0.058 Score=42.37 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=49.3
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..... |.-.-.+.+|+.|+.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~~--d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPA--DRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCC--CCceEEEEECHHHHHHH
Confidence 45566677553 68999999999999 6899999999999999999874100 00012477888877544
No 397
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=92.20 E-value=0.056 Score=42.38 Aligned_cols=68 Identities=12% Similarity=0.279 Sum_probs=50.0
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.-.-.+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~--~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSE--VDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECS--SSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC--CCcceEEEEEChHHHHHH
Confidence 345566777654 68999999999999 578999999999999999987520 001112577888877444
No 398
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=92.13 E-value=0.059 Score=42.30 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=48.7
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..... |.-.-.+.+|+.|..+.
T Consensus 32 ~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~--d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 32 YLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDAS--NKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSS--CTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCC--CCceeeeEEChhHHHHH
Confidence 4456666654 68999999999999 6899999999999999999874210 00112478888877544
No 399
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.12 E-value=0.15 Score=41.32 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=47.3
Q ss_pred HHcCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|..+ +++.|..+||+.+++ ++..+.++++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~--DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRKPE--NRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEETT--EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCCCC--CCCeeEeEECHHHHHHH
Confidence 345566667654 268999999999999 6789999999999999999874200 00001477888877554
No 400
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=92.10 E-value=0.37 Score=44.18 Aligned_cols=121 Identities=11% Similarity=0.118 Sum_probs=73.3
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCceEEeCCCCC-C---CC--CccEEEecchhccCC
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSI-KCSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S---IP--SADAFLFKLIFHDYD 266 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~---~~--~~D~i~~~~vlh~~~ 266 (359)
.+|+|+-||.|.++..+..+.-+. .+.++|. +.+++..+. .+...++.+|+.+ . ++ .+|+++...-...++
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 589999999999999999885322 4778888 555554443 3445677888876 2 22 589999886654443
Q ss_pred hh--------HHHHHHHHHH---HhcC--CCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 267 DE--------VCLKLLKNCR---EAVA--SSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 267 d~--------~~~~iL~~~~---~~L~--p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
.. ..-.++.++. +.++ | +++++|.+..-.. + .+.+.+.+
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P-----~~~~~ENV~~l~~---------------------~--~~~~~i~~ 134 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPRLQKLP-----KYILLENVKGFEV---------------------S--STRDLLIQ 134 (343)
T ss_dssp -------------CHHHHHHHHGGGCSSCC-----SEEEEEEETTGGG---------------------S--HHHHHHHH
T ss_pred hcCCcCCccCccchHHHHHHHHHHHhcCCC-----CEEEEeCCccccC---------------------H--HHHHHHHH
Confidence 21 1112333333 3444 5 5777777642110 0 14567888
Q ss_pred HHHhcCCceee
Q 043623 334 LFFDAGFTSYK 344 (359)
Q Consensus 334 ll~~aGf~~~~ 344 (359)
.|++.||.+..
T Consensus 135 ~l~~~GY~v~~ 145 (343)
T 1g55_A 135 TIENCGFQYQE 145 (343)
T ss_dssp HHHHTTEEEEE
T ss_pred HHHHCCCeeEE
Confidence 88999988654
No 401
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=92.08 E-value=0.22 Score=43.67 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHH-------CCCCeEEEeec----hHH------------------------Hh-------
Q 043623 194 GLSSLVEVGGGTGSFARIISEA-------FPSIKCSVLEL----PHV------------------------IA------- 231 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------i~------- 231 (359)
-+..|+|+|+-.|..+..++.. .++.++.++|. |+. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3579999999999988886652 46789999994 321 00
Q ss_pred cCCC----CCCceEEeCCCCC--C-----CC--CccEEEecchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEe
Q 043623 232 DLPE----TDNLKFIAGDMNQ--S-----IP--SADAFLFKLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVD 294 (359)
Q Consensus 232 ~a~~----~~rv~~~~~d~~~--~-----~~--~~D~i~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e 294 (359)
+.+. .++|+++.|++.+ + .+ .+|++.+-.=. -+.....+..+...|+| ||.|++-|
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~---GGvIv~DD 217 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTK---GSIVAFDE 217 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCC---CcEEEEcC
Confidence 0011 4789999999876 2 22 37888776521 23356789999999999 55554444
No 402
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=92.05 E-value=0.072 Score=42.78 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=47.7
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... .|.-...+.+|+.|+.+.
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~--~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHG--DDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC-----------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCC--CCCCeeEEEECHHHHHHH
Confidence 45567777654 78999999999999 689999999999999999986410 000113477888776444
No 403
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=92.05 E-value=0.069 Score=42.46 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=49.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|+|.+.... .|.-.-.+.+|+.|+.+..
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~--~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAA--SDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCc--ccCCeeEeeECHHHHHHHH
Confidence 45566777654 78999999999999 689999999999999999987410 0000125888988875553
No 404
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=92.02 E-value=0.089 Score=38.48 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=48.8
Q ss_pred HcCcccccccCCCCCCHHHHHh-hcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVS-ALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~-~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
++.|+-.|... ++.|..+||+ ..++ +...+.|=++.|...|+|+.++ ++ +.+|+.|+.+..
T Consensus 18 QfsiL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~--------~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG--------DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET--------TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC--------CC-eeeCHhHHHHHH
Confidence 34556667665 5999999999 9999 7889999999999999999433 34 999998885553
No 405
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=91.98 E-value=0.05 Score=40.94 Aligned_cols=46 Identities=28% Similarity=0.488 Sum_probs=37.5
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+.|+..|...|.+.|..+||+.+|+ +...+++.|..|...|+|...
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3455555322348999999999999 689999999999999999877
No 406
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=91.97 E-value=0.098 Score=41.08 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=46.7
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.|+..|... + .|..+||+.+++ ++..+.+.++.|...|+|.+.... .|.-.-.+.+|+.|..+.
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~--~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDS--KDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC------------CCEECGGGHHHH
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCC--CCCceeEEEECHhHHHHH
Confidence 445566777653 4 999999999999 689999999999999999986410 001123577888776444
No 407
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=91.72 E-value=0.064 Score=43.07 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=48.5
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~--DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEK--DRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC-----CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCC--CCCeeEEEECHHHHHHH
Confidence 3346666554 78999999999999 6899999999999999999875210 00012577888877554
No 408
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=91.72 E-value=0.05 Score=40.23 Aligned_cols=59 Identities=8% Similarity=0.249 Sum_probs=42.5
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.++.|+..|... ++.++.+||+.+|+ ++..+.+.|+.|... ++..... |-.-.|++++.
T Consensus 28 ~Rl~IL~~l~~~-~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~~-----gr~~~y~l~~~ 86 (99)
T 2zkz_A 28 MRLKIVNELYKH-KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNRQ-----GLEIYYSINNP 86 (99)
T ss_dssp HHHHHHHHHHHH-SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEEE-----TTEEEEECCCH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheEe-----CcEEEEEEChH
Confidence 344455333222 78999999999999 689999999999999 9986642 11235777764
No 409
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=91.62 E-value=0.12 Score=40.62 Aligned_cols=69 Identities=13% Similarity=0.256 Sum_probs=50.9
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|+|.+.... .|.-.-.+.+|+.|..+..
T Consensus 41 ~~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~--~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSE--EDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCS--SCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCC--CCCCeeEEEECHhHHHHHH
Confidence 345566666553 68999999999999 689999999999999999987421 0011134888998885554
No 410
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.61 E-value=0.1 Score=41.52 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=50.2
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+.... .|.-.-.+.+|+.|+.+.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~--~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDP--VDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECT--TTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCC--CCcceeEEEECHHHHHHH
Confidence 355667777654 68999999999999 689999999999999999986410 000112477888877544
No 411
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=91.59 E-value=0.072 Score=42.82 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=49.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|...|++.+..... |.-.-.+.+|+.|+.+.
T Consensus 54 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~--d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 54 KMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDSD--DQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC----CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCCC--CCCeeEEEECHHHHHHH
Confidence 45567777664 68999999999999 6899999999999999999864100 00113478888776444
No 412
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.35 E-value=0.079 Score=39.20 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=39.0
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|+|....
T Consensus 22 ~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34455555442 68999999999999 6899999999999999999875
No 413
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=90.94 E-value=0.37 Score=40.67 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=49.5
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 50 q~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~--DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLN--DKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCC--CCceEEEEECHHHHHHH
Confidence 34556667554 68999999999999 6899999999999999999875200 00012578899887554
No 414
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=90.88 E-value=0.059 Score=46.60 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=42.8
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceee
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFST 85 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 85 (359)
.+|.--.++.|+..|.. +|.|+.+||+.+|+ ++..+.+.|+.|...|+|..
T Consensus 7 kaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEE
Confidence 34444556667777874 79999999999999 68999999999999999998
No 415
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=90.82 E-value=0.17 Score=42.70 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=48.1
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCC-CCCceEecCccc
Q 043623 31 FLKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSRE-EENEAYALTSAS 105 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~-~~~~~~~~t~~~ 105 (359)
+|.--.++.|+..|.. +|.|..+||+.+++ ++..+.+.|+.|...|+|...... ... +..-.|++++.+
T Consensus 11 aL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~-~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 11 VLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEK-IPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC-BTTBCCCEEEEECTTE
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeec-cCCCCceEEEEEChHH
Confidence 3333444555556654 79999999999999 689999999999999999986421 001 112357776643
No 416
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=90.69 E-value=0.24 Score=39.60 Aligned_cols=101 Identities=17% Similarity=0.078 Sum_probs=62.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcccccccCC-CCCCHHHHHhhcC-CCCCCcchHHHHHHHHhccCceeeccccC--C
Q 043623 16 QAHLYKHVLSYMSSIFLKCAVELGIPDIIHKRG-RPVTLPELVSALE-FQPNKRNCLRRIMRLLDHSGFFSTTKVHN--S 91 (359)
Q Consensus 16 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~t~~~LA~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~ 91 (359)
..+....+.+.....+| ..|..++ +..|+++|++.++ + ++..+.+-|+.|...|+|....... .
T Consensus 19 ~~~~~~~l~~~tR~~IL---------~~Ll~~p~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~~~~ 86 (151)
T 3u1d_A 19 ELERRRFVLHETRLDVL---------HQILAQPDGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPRAKS 86 (151)
T ss_dssp HHHHHHHHCCHHHHHHH---------HHHHHSTTSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCCCTT
T ss_pred HHHHHHHhcchHHHHHH---------HHHHcCCCCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCcCcc
Confidence 44445544555444444 4443221 4689999999998 8 6899999999999999999663211 0
Q ss_pred CCCC-CceEecCccch-hhhcCCCCChhHHHHHhcCccccchhhhHHHHHc
Q 043623 92 REEE-NEAYALTSASK-LLLKDKPYCLSPFVLLVTDAAFITPGHYLSRWLR 140 (359)
Q Consensus 92 ~~~~-~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 140 (359)
..+. ...|++|+.|+ .|.... .+. ....|..|.+.+.
T Consensus 87 ~rGrP~k~Y~LT~~Gr~~l~~y~--~la----------~~~alr~l~~~v~ 125 (151)
T 3u1d_A 87 VDDPPTTFYAVTGEGIALLRAVS--MYE----------EAAVWRSVYEQME 125 (151)
T ss_dssp SSSCCCEEEEECHHHHHHHHHTT--CST----------HHHHTHHHHHHSC
T ss_pred cCCCCceEEEECHHHHHHHHHhH--HHh----------HHHHHHHHHHHhh
Confidence 0111 12799999988 443322 111 1245666777764
No 417
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=90.60 E-value=0.33 Score=31.39 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=39.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+++|+-|+|..+++ +.+..+.-|+.|...|-+.+.. .+|++.|-
T Consensus 17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs---------SRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS---------SRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC---------CEEEECC-
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc---------cccccCcc
Confidence 68999999999999 5788999999999999999885 68998874
No 418
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=90.51 E-value=0.088 Score=43.67 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=50.4
Q ss_pred HHHHHHHcCcccccccCCCCCCHHHHHhhcC-CCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhh
Q 043623 31 FLKCAVELGIPDIIHKRGRPVTLPELVSALE-FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLL 108 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
+|.-=.++.|+..|.. +|.|+.+||+.++ + ++..+.+.|+.|...|+|+...+..+...-...|++++.+..+
T Consensus 19 ~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~ 92 (182)
T 4g6q_A 19 LLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA 92 (182)
T ss_dssp HTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence 3334456777788865 7999999999996 8 4688999999999999998664211000012357777654433
No 419
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=90.23 E-value=0.17 Score=39.02 Aligned_cols=67 Identities=10% Similarity=0.329 Sum_probs=48.4
Q ss_pred cCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..|..+ +++.|..+||+.+++ ++..+.++++.|...|++.+.... .|.-.-.+.+|+.|+.+.
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~--~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNE--HDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCS--SSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC--CCCCeeEEEECHHHHHHH
Confidence 4455555442 267999999999999 679999999999999999986421 011123578898887554
No 420
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=90.21 E-value=0.35 Score=35.65 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=40.1
Q ss_pred HHHHHHcCccc-ccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 32 LKCAVELGIPD-IIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 32 l~~a~~lglf~-~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+.-.++..|.+ .+.. |..+ |..+||+.+|+ +...+++-|+.|...|++....
T Consensus 16 l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 16 VATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 34444555665 3433 3555 99999999999 6799999999999999998875
No 421
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=89.82 E-value=0.31 Score=33.77 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=40.6
Q ss_pred ccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 41 PDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 41 f~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
++.|.. ++..|+.+||+++|+ ....+.|.|--|...|.|.....+ +-.|+.+
T Consensus 21 i~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~~~------PP~W~~~ 72 (75)
T 1sfu_A 21 VLSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVPSN------PPKWFKN 72 (75)
T ss_dssp HHTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEECCS------SCEEEEC
T ss_pred HHhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCCCC------CCCccCC
Confidence 346665 345999999999999 468899999999999999888532 4566654
No 422
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=89.53 E-value=0.077 Score=43.69 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=48.3
Q ss_pred HcCcccccccCCCC--CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGRP--VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~--~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|+..|..+++| .|..+||+.+++ ++..+.+.++.|...|+|.+..... |.-.-.+.+|+.|+.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~--DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDER--DRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCC--CCCeeEEEECHHHHHHH
Confidence 45567777654333 999999999999 5789999999999999999874100 00012477888877544
No 423
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=89.42 E-value=0.75 Score=40.74 Aligned_cols=130 Identities=16% Similarity=0.083 Sum_probs=81.6
Q ss_pred hChHHHHHHHHHhhc---CccchHHHHHhcccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--
Q 043623 162 QNHEFNNLFNQGLAS---DSQMAKLIIKDCKHIFDGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADLPE-- 235 (359)
Q Consensus 162 ~~~~~~~~f~~~~~~---~~~~~~~l~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~-- 235 (359)
+.+|+.....+.+.. .......+++.+.. + ....+||+=+|||.++++.+.. .-+++.+|. +..++..++
T Consensus 58 ktgE~~~GI~rl~~~~~~~p~~l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl 133 (283)
T 2oo3_A 58 KTEEYKEGINPVWLDRENLPSLFLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLP 133 (283)
T ss_dssp -CCGGGGTHHHHHHTGGGSCGGGHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSC
T ss_pred hcHHHHHHHHHHHhcccCCcHHHHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHh
Confidence 455555555555441 11111344444331 2 3467899999999999999883 468999998 666554443
Q ss_pred --CCCceEEeCCCCC--C--CC---CccEEEecchhccCChhHHHHHHHHHHHh--cCCCCCCceEEEEeeecCCC
Q 043623 236 --TDNLKFIAGDMNQ--S--IP---SADAFLFKLIFHDYDDEVCLKLLKNCREA--VASSDGREKVIIVDIVVNEK 300 (359)
Q Consensus 236 --~~rv~~~~~d~~~--~--~~---~~D~i~~~~vlh~~~d~~~~~iL~~~~~~--L~p~~~gG~lli~e~~~~~~ 300 (359)
.++++++..|.++ . .| .||+|++-=-...- .+..++++.+.+. +.| +|.++|.=++....
T Consensus 134 ~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k--~~~~~vl~~L~~~~~r~~---~Gi~v~WYPi~~~~ 204 (283)
T 2oo3_A 134 HFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK--EEYKEIPYAIKNAYSKFS---TGLYCVWYPVVNKA 204 (283)
T ss_dssp CTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST--THHHHHHHHHHHHHHHCT---TSEEEEEEEESSHH
T ss_pred CcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCC--cHHHHHHHHHHHhCccCC---CeEEEEEEeccchH
Confidence 5789999999765 1 12 49999887544321 2344556555553 345 79999988876543
No 424
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=89.22 E-value=0.13 Score=36.35 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=38.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCC-CCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQP-NKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++.|+..|.. .++.|..+|++.++.++ -++..+.++|+.|...|+|.+..
T Consensus 11 e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 11 ELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 3445556654 27899999999997310 05789999999999999999885
No 425
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=89.02 E-value=0.23 Score=41.23 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=51.9
Q ss_pred HHHcCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 35 AVELGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 35 a~~lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
..++.++..|..+ +++.|..+||+.+++ ++..+.++++.|...|+|.+..... |.-.-.+.+|+.|..+..
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~--DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPH--DKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS--CSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCC--CCCeeEEEECHHHHHHHH
Confidence 3456666677542 268999999999999 6899999999999999999875210 001135888998875553
No 426
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=89.02 E-value=0.27 Score=41.11 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHHHHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 32 LKCAVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+....+..|+..|.. ++.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 17 l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 17 MLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 334556677788873 78999999999999 689999999999999999987
No 427
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=88.97 E-value=0.19 Score=39.93 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=39.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
++.|+..|.. +++.|..+||+.+|+ ++..+.+.++.|...|++.+.
T Consensus 5 ~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 5 DLRILKILQY-NAKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHTT-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence 4567777865 378999999999999 689999999999999999874
No 428
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=88.91 E-value=0.22 Score=39.38 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=39.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+..|++.|... ++.|..+||+++|+ ++..+.+.++.|...|++.+.
T Consensus 7 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 34566777653 78999999999999 689999999999999999865
No 429
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=88.90 E-value=0.21 Score=39.69 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=38.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+..|+..|... ++.|..+||+++|+ ++..+.+.++.|...|++.+.
T Consensus 9 ~~~iL~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAAD-GRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 34566667653 78999999999999 689999999999999999765
No 430
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=88.59 E-value=0.24 Score=41.11 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=45.8
Q ss_pred HHHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCc-eeeccccCCCCCCCceEecCcc
Q 043623 35 AVELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGF-FSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.....|++.|.+.+++.|..+||+++|+ +.+.+++-++.|...|+ +.... +.|.+.+.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~~---------~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVATP---------RGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEET---------TEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEC---------CEEEECCc
Confidence 3455677778643367999999999999 68999999999999999 76643 56877753
No 431
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=88.45 E-value=1.9 Score=39.98 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=75.3
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCceEEeCCCCC-C---C-------CCccEEEecch
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIK-CSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S---I-------PSADAFLFKLI 261 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~---~-------~~~D~i~~~~v 261 (359)
.+++|+-||.|.++..+.++. .+ +.++|. +.+++..+. .+...++.+|+.+ . + +.+|+++..--
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 589999999999999999884 44 458888 555544332 3456778888876 1 1 35899998776
Q ss_pred hccCC--------hhHHHHHHH---HHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHH
Q 043623 262 FHDYD--------DEVCLKLLK---NCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKE 330 (359)
Q Consensus 262 lh~~~--------d~~~~~iL~---~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e 330 (359)
+..++ |+. -.++. ++.+.++| +++|+|.+..-.... .....++
T Consensus 81 CQ~fS~ag~~~~~d~r-~~L~~~~~~~v~~~~P-----~~~v~ENV~gl~s~~--------------------~~~~~~~ 134 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSR-NQLYMHFYRLVSELQP-----LFFLAENVPGIMQEK--------------------YSGIRNK 134 (376)
T ss_dssp CCTTC-------CHHH-HHHHHHHHHHHHHHCC-----SEEEEEECTTTTCGG--------------------GHHHHHH
T ss_pred CCCcccccCCCCCCch-HHHHHHHHHHHHHhCC-----CEEEEecchHhhccC--------------------cHHHHHH
Confidence 55554 222 22332 34445677 688888875432111 0013556
Q ss_pred HHHHHHhcCCce
Q 043623 331 WERLFFDAGFTS 342 (359)
Q Consensus 331 ~~~ll~~aGf~~ 342 (359)
+. .|++.||.+
T Consensus 135 i~-~l~~~GY~v 145 (376)
T 3g7u_A 135 AF-NLVSGDYDI 145 (376)
T ss_dssp HH-HHHHTTEEE
T ss_pred HH-HHHcCCCcc
Confidence 66 788888887
No 432
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=88.40 E-value=0.099 Score=39.95 Aligned_cols=59 Identities=19% Similarity=0.415 Sum_probs=44.0
Q ss_pred cccccccCCCCCCHHHHHhhcC----CCCCCcchHHHHHHHHhccCceeeccccCCCCCCCce---EecCccchhhh
Q 043623 40 IPDIIHKRGRPVTLPELVSALE----FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEA---YALTSASKLLL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~~LA~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~---~~~t~~~~~l~ 109 (359)
++..|... ++.|..+||+.++ + ++..+.++|+.|...|+|.+... +.. +.+|+.++.+.
T Consensus 15 vL~~l~~~-~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~-------~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 15 VMNIIWMK-KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKD-------NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHH-SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEE-------TTEEEEEESSCHHHHHH
T ss_pred HHHHHHhC-CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEec-------CCeEEEEEecCHHHHHH
Confidence 34444332 6899999999999 6 47899999999999999998852 222 35777766554
No 433
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=88.37 E-value=0.13 Score=38.12 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=39.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCC-CCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQP-NKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++.|+..|-+. ++.|..||++.++.++ -++.-+.++|+.|...|+|.+..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 34566666543 6899999999998521 14678999999999999999886
No 434
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=88.36 E-value=0.21 Score=39.61 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=43.0
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|..+||+.+++ ++..+.++++.|...|+|.+..... |.=.-...+|+.|+.+.
T Consensus 50 ~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~~--DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNPN--DGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC------CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecCC--cCceeEEEECHHHHHHH
Confidence 68999999999999 6899999999999999999885210 00012477888887554
No 435
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=88.32 E-value=0.29 Score=35.99 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=33.8
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++.|..+||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 78999999999999 6899999999999999999875
No 436
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=88.22 E-value=0.58 Score=42.57 Aligned_cols=122 Identities=13% Similarity=0.127 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCe-E-EEeec-hHHHhcCCC-CCCceEEeCCCCC-C---CC--CccEEEecchhc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIK-C-SVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S---IP--SADAFLFKLIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~-~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~---~~--~~D~i~~~~vlh 263 (359)
...+++|+-||.|.+...+.++.-+.+ + .++|+ +.+++..+. .+.. ++.+|+.+ . ++ .+|+++.+.-..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 346899999999999999988753234 4 58888 555443332 1111 55677776 2 23 489999876655
Q ss_pred cC-----------ChhHHHHHHHHHHH----hc--CCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCccc
Q 043623 264 DY-----------DDEVCLKLLKNCRE----AV--ASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIER 326 (359)
Q Consensus 264 ~~-----------~d~~~~~iL~~~~~----~L--~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
.+ .|+. -.++..+.+ .+ +| +++++|.+..-.. + .
T Consensus 88 ~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~~~~~~P-----~~~~lENV~gl~~---------------------~--~ 138 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDPR-AKSVLHLYRDILPYLINKP-----KHIFIENVPLFKE---------------------S--L 138 (327)
T ss_dssp TCSHHHHTTTCTTTCGG-GHHHHHHHHTTGGGCSSCC-----SEEEEEECGGGGG---------------------S--H
T ss_pred CcccccCCCCCCCcccc-chhHHHHHHHHHHHhccCC-----CEEEEEchhhhcC---------------------h--H
Confidence 55 2332 244555555 34 45 6888887642110 0 1
Q ss_pred CHHHHHHHHHhcCCceeeE
Q 043623 327 SEKEWERLFFDAGFTSYKI 345 (359)
Q Consensus 327 t~~e~~~ll~~aGf~~~~~ 345 (359)
+.+.+.+.|++.||.+...
T Consensus 139 ~~~~i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 139 VFKEIYNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEE
Confidence 4677888899999986543
No 437
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=88.05 E-value=0.26 Score=39.79 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=38.9
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+..|+..|... ++.|..+||+++|+ ++..+.+.++.|...|++.+.
T Consensus 12 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQEN-GRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeee
Confidence 34566667653 78999999999999 689999999999999999865
No 438
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=87.98 E-value=1.7 Score=39.16 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=51.2
Q ss_pred CeEEEEcCCch--HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCCCccEEEecchhccCChhHHH
Q 043623 196 SSLVEVGGGTG--SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDDEVCL 271 (359)
Q Consensus 196 ~~vlDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d~~~~ 271 (359)
.+|.=||+|.= .++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ ...++|+|+++- +.....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~~ 108 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR 108 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHHH
Confidence 68999998752 34444555433338999998 5555544332222222233333 344689998873 444567
Q ss_pred HHHHHHHHhcCC
Q 043623 272 KLLKNCREAVAS 283 (359)
Q Consensus 272 ~iL~~~~~~L~p 283 (359)
++++++...++|
T Consensus 109 ~vl~~l~~~l~~ 120 (314)
T 3ggo_A 109 EIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHhhccCC
Confidence 789999999998
No 439
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=87.68 E-value=0.26 Score=39.15 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=39.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+..|+..|.. +++.|..+||+.+|+ ++..+.+.++.|...|++.+.
T Consensus 11 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSE-NSRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 4456677765 378999999999999 689999999999999999865
No 440
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=87.58 E-value=0.26 Score=39.30 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=39.1
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+..|+..|... ++.|..+||+++|+ ++..+.+.++.|...|++...
T Consensus 10 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 10 DRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceE
Confidence 34566677653 78999999999999 689999999999999999965
No 441
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=87.57 E-value=0.26 Score=41.27 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=33.5
Q ss_pred cCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 46 KRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 46 ~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++|.|.|..|||+.+|++ ...+.+.|+.|...|++.+..
T Consensus 20 ~~g~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHSSCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred HhCCCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence 334689999999999994 568999999999999999875
No 442
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=87.21 E-value=2.2 Score=38.61 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=72.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCceEEeCCCCC----CCCCccEEEecchhccCC-
Q 043623 195 LSSLVEVGGGTGSFARIISEAFPSIK-CSVLEL-PHVIADLPE-TDNLKFIAGDMNQ----SIPSADAFLFKLIFHDYD- 266 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~----~~~~~D~i~~~~vlh~~~- 266 (359)
..+++|+-||.|.++..+..+. .+ +.++|. +.+++..+. .+... .+|+.+ ..+.+|+++...-+..++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 4689999999999999998864 44 566787 555443322 11111 567665 245689998876554443
Q ss_pred --------hhH---HHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHH
Q 043623 267 --------DEV---CLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLF 335 (359)
Q Consensus 267 --------d~~---~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll 335 (359)
|+. ...+++ +.+.++| +++++|.+..-... ....+.+.+.+.|
T Consensus 87 ag~~~g~~d~r~~L~~~~~r-~i~~~~P-----~~~~~ENV~gl~~~--------------------~~~~~~~~i~~~l 140 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIAR-IVREKKP-----KVVFMENVKNFASH--------------------DNGNTLEVVKNTM 140 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHH-HHHHHCC-----SEEEEEEEGGGGTG--------------------GGGHHHHHHHHHH
T ss_pred hcccCCCcchhhHHHHHHHH-HHHhccC-----cEEEEeCcHHHHhc--------------------cccHHHHHHHHHH
Confidence 221 122333 4445677 68888876432110 0112467788889
Q ss_pred HhcCCceee
Q 043623 336 FDAGFTSYK 344 (359)
Q Consensus 336 ~~aGf~~~~ 344 (359)
++.||.+..
T Consensus 141 ~~~GY~v~~ 149 (327)
T 2c7p_A 141 NELDYSFHA 149 (327)
T ss_dssp HHTTBCCEE
T ss_pred HhCCCEEEE
Confidence 999988644
No 443
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.08 E-value=0.24 Score=38.82 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=38.3
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
..|+..|.. +++.|..+||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 7 ~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 7 KIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeccc
Confidence 445666654 368999999999999 6899999999999999997653
No 444
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=87.00 E-value=1 Score=45.07 Aligned_cols=95 Identities=20% Similarity=0.199 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHC-------CC-----CeEEEeec----hHHHhc-CC-----------------C----
Q 043623 194 GLSSLVEVGGGTGSFARIISEAF-------PS-----IKCSVLEL----PHVIAD-LP-----------------E---- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~i~~-a~-----------------~---- 235 (359)
+.-+|+|+|-|+|.......+.+ |+ ++++.++. ++.+.. .. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34699999999998888765542 32 46888885 233321 11 0
Q ss_pred -------C--CCceEEeCCCCC---CC-----CCccEEEecchh-ccCChhHHHHHHHHHHHhcCCCCCCceEE
Q 043623 236 -------T--DNLKFIAGDMNQ---SI-----PSADAFLFKLIF-HDYDDEVCLKLLKNCREAVASSDGREKVI 291 (359)
Q Consensus 236 -------~--~rv~~~~~d~~~---~~-----~~~D~i~~~~vl-h~~~d~~~~~iL~~~~~~L~p~~~gG~ll 291 (359)
. -+++..-+|+.+ .+ ..+|++++-..- ..-++.-...+++.+.+.++| ||.+.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~ 216 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLA 216 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE---EEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC---CCEEE
Confidence 1 123455677654 12 238998874421 111121234678999999999 77655
No 445
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=86.84 E-value=0.25 Score=39.38 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=39.0
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+..|+..|... ++.|..+||+++|+ ++..+.+.++.|...|++...
T Consensus 9 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 34566677653 78999999999999 689999999999999999865
No 446
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=86.74 E-value=0.34 Score=39.60 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=39.1
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+..|+..|... ++.|..+||+++|+ ++..+.+.++.|...|++.+.
T Consensus 19 d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKKD-ARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 34567777653 78999999999999 689999999999999999865
No 447
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=86.74 E-value=0.56 Score=39.27 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=42.5
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+|++..+||+.+++ .+..++..++.|...|+++... +...+|+.|+.++
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~~---------~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ---------RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-----------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC---------CCeEECHHHHHHH
Confidence 58999999999999 6899999999999999999885 6799999887444
No 448
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=86.68 E-value=0.69 Score=39.61 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLK 110 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
++.|..++|+++++ ++..+.+.++.|...|+|.+... .....+++|+.|+.+..
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~-----~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVT-----KRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEE-----TTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEc-----CCeEEEEECHHHHHHHH
Confidence 57999999999999 68999999999999999999821 00257899999885553
No 449
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=86.49 E-value=0.33 Score=39.19 Aligned_cols=47 Identities=11% Similarity=0.269 Sum_probs=40.5
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
.+..|++.|.. +++.|..+||+++|+ ++..+++-++.|...|++.+-
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence 34567788876 489999999999999 689999999999999999854
No 450
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=86.31 E-value=1.3 Score=34.49 Aligned_cols=36 Identities=17% Similarity=0.458 Sum_probs=33.4
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+|.|..+||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 40 ~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 40 KPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 68999999999999 6789999999999999999863
No 451
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=86.14 E-value=0.74 Score=34.06 Aligned_cols=43 Identities=9% Similarity=0.256 Sum_probs=35.3
Q ss_pred ccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 41 PDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 41 f~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+..|.. |+.. |..+||+.+|+ +..-+++-|+.|...|+|....
T Consensus 34 ~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 34 FEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 344443 3445 99999999999 6899999999999999999775
No 452
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=86.05 E-value=0.34 Score=42.32 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=49.9
Q ss_pred HcCcccccccCCC-CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 37 ELGIPDIIHKRGR-PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~-~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.++..|..+++ +.|..+||+.+++ ++..+.++++.|...|+|.+....+ |.=.-...+|+.|+.+.
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~~~--DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTE--DERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSS--STTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCC--CCCeEEEEECHHHHHHH
Confidence 3556777765432 5999999999999 6899999999999999999985210 00012577788877554
No 453
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=85.87 E-value=0.42 Score=37.12 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=41.8
Q ss_pred HHHHcCcccccccCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHHhccCceeecc
Q 043623 34 CAVELGIPDIIHKRGRPVTLPELVSAL-----EFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~~LA~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+.-+.-|++.|...+++.|++||.+.+ ++ +..-+-|.|+.|+..|++.+..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEE
Confidence 344566677776545799999999998 67 6789999999999999999875
No 454
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=85.80 E-value=0.34 Score=39.61 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=40.1
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
.+..|+..|... ++.|..+||+++|+ ++..+++.|+.|...|++...
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEee
Confidence 445677777653 78999999999999 689999999999999999864
No 455
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=85.55 E-value=0.3 Score=31.57 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=40.1
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeec
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTT 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 86 (359)
+-.|++.+..+||-..++..|+..|+ +...+-.+|+.|.+.|++.-+
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 34567778777899999999999999 578999999999999998754
No 456
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=85.51 E-value=0.47 Score=37.58 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=36.1
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|..+||+.+++ ++..+.++++.|...|+|....+ .|.=.-...+|+.|+.+.
T Consensus 51 ~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~~---~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 51 IDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMAG---ADARCKRIELTAKGRAAL 105 (148)
T ss_dssp ---CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC--------------CCBCHHHHHHH
T ss_pred CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC---CCCCeeEEEECHHHHHHH
Confidence 46899999999999 68999999999999999954321 011012467787777444
No 457
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=85.51 E-value=0.74 Score=39.37 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=42.2
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.+..+||+.+++ ++..+.+.++.|...|++.+.. ...+.+|+.|+.+.
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS--------DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC--------CCCeEECHHHHHHH
Confidence 3456999999999 6899999999999999999986 46799999987554
No 458
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=85.36 E-value=0.74 Score=36.38 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHcCcccccccCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHHhccCceeecc
Q 043623 35 AVELGIPDIIHKRGRPVTLPELVSAL-----EFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~~LA~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
--+.-|++.|...+++.|++||.+.+ ++ +..-+-|.|+.|...|++.+..
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEe
Confidence 34455777775545799999999998 66 6789999999999999999875
No 459
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=85.27 E-value=0.67 Score=46.66 Aligned_cols=119 Identities=19% Similarity=0.212 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHC-------CC-----CeEEEeec-h---HHHhcC-C----------------------
Q 043623 194 GLSSLVEVGGGTGSFARIISEAF-------PS-----IKCSVLEL-P---HVIADL-P---------------------- 234 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~i~~a-~---------------------- 234 (359)
+.-+|+|+|.|+|.......+.+ |+ ++++.++. | +.+..+ .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 44699999999999888776642 33 56888885 2 222210 0
Q ss_pred ------CCC--CceEEeCCCCC--C-C-----CCccEEEecchh-ccCChhHHHHHHHHHHHhcCCCCCCceEEEEeeec
Q 043623 235 ------ETD--NLKFIAGDMNQ--S-I-----PSADAFLFKLIF-HDYDDEVCLKLLKNCREAVASSDGREKVIIVDIVV 297 (359)
Q Consensus 235 ------~~~--rv~~~~~d~~~--~-~-----~~~D~i~~~~vl-h~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~ 297 (359)
... ++++..||+.+ + + ..+|++++-..- ..-++.-...+++.+.+.++| ||++.-.-
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t~~--- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFSTFT--- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEEESC---
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEEecc---
Confidence 012 34567788765 2 2 238888874321 111111124678888888998 67654211
Q ss_pred CCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHHHHHhcCCceeeEEe
Q 043623 298 NEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWERLFFDAGFTSYKITP 347 (359)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 347 (359)
.....++.|.++||.+.++..
T Consensus 212 -----------------------------~~~~vr~~l~~aGf~~~~~~~ 232 (689)
T 3pvc_A 212 -----------------------------AAGFVRRGLQQAGFNVTKVKG 232 (689)
T ss_dssp -----------------------------CCHHHHHHHHHTTCEEEEEEC
T ss_pred -----------------------------CcHHHHHHHHhCCeEEEeccC
Confidence 123457778889998776553
No 460
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=85.15 E-value=1.1 Score=41.92 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=40.7
Q ss_pred CCCCeEEEEcCCchHHHHHHH-HHCCC-CeEEEeec-hHHHhcCCC---------C-CCceEEeCCCCC
Q 043623 193 DGLSSLVEVGGGTGSFARIIS-EAFPS-IKCSVLEL-PHVIADLPE---------T-DNLKFIAGDMNQ 248 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~i~~a~~---------~-~rv~~~~~d~~~ 248 (359)
+++..|+|||++.|.++..++ +..+. .+++.++. |...+.+++ . ++|+++..-..+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 577899999999999999988 66665 79999997 655443321 2 567766554443
No 461
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=85.02 E-value=3.3 Score=36.39 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=52.2
Q ss_pred CeEEEEcCCch--HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCCCCCccEEEecchhccCChhHHHH
Q 043623 196 SSLVEVGGGTG--SFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQSIPSADAFLFKLIFHDYDDEVCLK 272 (359)
Q Consensus 196 ~~vlDvG~G~G--~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~~~~~D~i~~~~vlh~~~d~~~~~ 272 (359)
.+|.=||+|.= .++..+.+..++.++++.|. ++..+.+.+...+.....|..+...+.|+|+++- ++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 57888998873 34445556555678999997 5444433221111122233333334589998874 4444567
Q ss_pred HHHHHHHh-cCCCCCCceEEE
Q 043623 273 LLKNCREA-VASSDGREKVII 292 (359)
Q Consensus 273 iL~~~~~~-L~p~~~gG~lli 292 (359)
+++.+.+. +++ +.+++
T Consensus 82 v~~~l~~~~l~~----~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKE----DVIIT 98 (290)
T ss_dssp HHHHHHTSCCCT----TCEEE
T ss_pred HHHHHHhcCCCC----CCEEE
Confidence 78888887 887 45554
No 462
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=84.98 E-value=0.65 Score=39.82 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=41.5
Q ss_pred CCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 51 VTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 51 ~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.+..+||+.+++ ++..+.+.|+.|...|++.+.. +..+.+|+.|+.+.
T Consensus 25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG--------DRHLELTEKGRALA 72 (230)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHHHHH
T ss_pred CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC--------CccEEECHHHHHHH
Confidence 344999999999 6899999999999999999986 46799999887554
No 463
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=84.93 E-value=0.75 Score=40.20 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAFPSIKCSVLEL-PHVIADL 233 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~i~~a 233 (359)
.++..|||..||+|..+....+. +.+++++|+ +..++.+
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~ 250 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA 250 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence 56789999999999999998876 568999999 6666544
No 464
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=84.64 E-value=0.65 Score=35.90 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=32.6
Q ss_pred CCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 50 PVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 50 ~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
..|.++||+.+++ ++..+.+.++.|...|++.+..
T Consensus 51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3799999999999 6899999999999999999975
No 465
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=84.16 E-value=0.59 Score=36.59 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=32.9
Q ss_pred CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 49 RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 49 ~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
...|.++||+++|+ ++..+.++|+.|...|++....
T Consensus 50 ~~ps~~~LA~~~~~---s~~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 50 YFPTPNQLQEGMSI---SVEECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp CSCCHHHHHTTSSS---CHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 45899999999999 6899999999999999999853
No 466
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=83.65 E-value=1.3 Score=33.48 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=49.8
Q ss_pred HHHHHcCcccccccCCCCCCHHHHHhhcC--------CCCCCc-chHHHHHHHHhccCceeeccccCCCCC-CCceEecC
Q 043623 33 KCAVELGIPDIIHKRGRPVTLPELVSALE--------FQPNKR-NCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALT 102 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~~LA~~~~--------~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t 102 (359)
.-..++-|+..|.. +|.+.-+|++.++ + ++ ..+.+.|+.|...|+|+...... ++ ..-.|++|
T Consensus 11 ~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~--~~~~r~~Y~LT 83 (118)
T 2esh_A 11 GWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTT--VSPPRKIYRIT 83 (118)
T ss_dssp HHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECS--SSSCEEEEEEC
T ss_pred cchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecC--CCCCceEEEEC
Confidence 33445556666665 7899999999883 5 67 89999999999999998774210 11 12368999
Q ss_pred ccchhhh
Q 043623 103 SASKLLL 109 (359)
Q Consensus 103 ~~~~~l~ 109 (359)
+.|+.+.
T Consensus 84 ~~G~~~l 90 (118)
T 2esh_A 84 PQGKLYL 90 (118)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 9988444
No 467
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=82.84 E-value=0.41 Score=34.70 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=36.9
Q ss_pred CcccccccCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 39 GIPDIIHKRG-RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 39 glf~~L~~~~-~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.|+..|..++ .+++..+||+++++ +..-+.++|+.|...|++.+..
T Consensus 24 ~Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 24 LVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 3444554321 47999999999999 6899999999999999999654
No 468
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=82.08 E-value=1.3 Score=33.61 Aligned_cols=72 Identities=24% Similarity=0.250 Sum_probs=49.2
Q ss_pred HHHHHHcCcccccccCCCCCCHHHHHhhc------CCCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEecCcc
Q 043623 32 LKCAVELGIPDIIHKRGRPVTLPELVSAL------EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALTSA 104 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~~LA~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t~~ 104 (359)
++-.+++=|+..|.. +|.+.-+|++.+ ++ ++..+-..|+.|...|+|+..... .+.+ ..-.|++|+.
T Consensus 8 ~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~-~~~g~~rk~Y~LT~~ 81 (117)
T 4esf_A 8 LKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKP-SDMGPPRKFYSLNEA 81 (117)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC------CEEEEEECHH
T ss_pred HHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeec-CCCCCCceEEEECHH
Confidence 333444444555665 789999999887 56 678999999999999999976310 0000 1235999999
Q ss_pred chhhh
Q 043623 105 SKLLL 109 (359)
Q Consensus 105 ~~~l~ 109 (359)
|+...
T Consensus 82 G~~~l 86 (117)
T 4esf_A 82 GRQEL 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88443
No 469
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=81.92 E-value=0.57 Score=36.58 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=38.6
Q ss_pred HcCcccccccCCCCCCHHHHHhhcC----CCCCCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALE----FQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++.|+..|...+++.|..+|++.++ + +...+.++|+-|...|+|.+..
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3445555654226899999999998 6 5789999999999999999885
No 470
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=81.89 E-value=0.28 Score=45.03 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhhcC
Q 043623 36 VELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLLKD 111 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~~~ 111 (359)
-+..|+..|... +++|..+||+.+++ ++.-++|.|+.|...|++.... ....+|+.|+.+...
T Consensus 21 r~~~iL~~l~~~-~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~---------~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 21 ERFQILRNIYWM-QPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK---------SGMTLTERGLEVYQG 83 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe---------cceEEcHHHHHHHHH
Confidence 356677888764 78999999999999 6799999999999999998553 458899888866543
No 471
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=81.73 E-value=1.1 Score=34.28 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=43.2
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.-.|.+.+.. .|.++.+||+.+++ ++..++.||+.|...|.+..-. .+.|.++..
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~--------~~~~~~~~~ 63 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV--------KDRYYRNDR 63 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec--------CCceECHHH
Confidence 3345566643 57799999999999 6789999999999999888886 466766643
No 472
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=81.63 E-value=1.8 Score=39.28 Aligned_cols=121 Identities=10% Similarity=0.132 Sum_probs=73.9
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCceEEeCCCCC-C---CC--CccEEEecchhccCC
Q 043623 196 SSLVEVGGGTGSFARIISEAFPSIK-CSVLEL-PHVIADLPE-TDNLKFIAGDMNQ-S---IP--SADAFLFKLIFHDYD 266 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~i~~a~~-~~rv~~~~~d~~~-~---~~--~~D~i~~~~vlh~~~ 266 (359)
.+++|+=||.|.+...+.++.-+.+ +.++|. +.+++..+. .+...++.+|+.+ . ++ .+|+++...-...++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 4799999999999999998754333 567887 444443322 2344566777765 2 23 489998765554442
Q ss_pred ---------hhHHHHHHHHHH---HhcC-CCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcCCcccCHHHHHH
Q 043623 267 ---------DEVCLKLLKNCR---EAVA-SSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVPGIERSEKEWER 333 (359)
Q Consensus 267 ---------d~~~~~iL~~~~---~~L~-p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~e~~~ 333 (359)
|+. -.++..+. +.++ | +++++|.+..-.. + .+.+.+.+
T Consensus 84 ~ag~~~~~~d~r-~~L~~~~~r~i~~~~~P-----~~~vlENV~gl~~---------------------~--~~~~~i~~ 134 (333)
T 4h0n_A 84 RNGKYLDDNDPR-TNSFLYLIGILDQLDNV-----DYILMENVKGFEN---------------------S--TVRNLFID 134 (333)
T ss_dssp ETTEECCTTCTT-SCCHHHHHHHGGGCTTC-----CEEEEEECTTGGG---------------------S--HHHHHHHH
T ss_pred hhhhccCCcCcc-cccHHHHHHHHHHhcCC-----CEEEEecchhhhh---------------------h--hHHHHHHH
Confidence 221 12333333 3444 6 6888887642110 0 13567888
Q ss_pred HHHhcCCceeeE
Q 043623 334 LFFDAGFTSYKI 345 (359)
Q Consensus 334 ll~~aGf~~~~~ 345 (359)
.|++.||.+...
T Consensus 135 ~l~~~GY~v~~~ 146 (333)
T 4h0n_A 135 KLKECNFIYQEF 146 (333)
T ss_dssp HHHHTTEEEEEE
T ss_pred HHHhCCCeEEEE
Confidence 899999987544
No 473
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=81.16 E-value=1.4 Score=33.01 Aligned_cols=49 Identities=8% Similarity=0.129 Sum_probs=38.0
Q ss_pred HHHHHHcCcccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 32 LKCAVELGIPDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
|...+..|-+. + |..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 18 i~~~I~~g~~~--~--G~~lPs~~~La~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 18 IVEAIIDGSYV--E--GEMIPSIRKISTEYQI---NPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp HHHHHHHTSSC--T--TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHcCCCC--C--CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 34444444443 1 3455 89999999999 6899999999999999999876
No 474
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=80.54 E-value=1 Score=40.78 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=43.8
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
..|++.|.+ ++++|.++||+++++ ++..++|-|+.|...|++..... +..|++.+.
T Consensus 8 ~~Il~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~-------g~GY~l~~~ 63 (321)
T 1bia_A 8 LKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-------GKGYSLPEP 63 (321)
T ss_dssp HHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-------TTEEECSSC
T ss_pred HHHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec-------CCCcEEeec
Confidence 345666654 478999999999999 68999999999999999865432 346888653
No 475
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=80.19 E-value=2.4 Score=32.69 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=38.9
Q ss_pred HHHHHHHcCcccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 31 FLKCAVELGIPDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.|...+..|-+. + |..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 12 ~i~~~I~~g~l~--~--G~~LPse~~La~~~gv---Sr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 12 LIEDSIVDGTLS--I--DQRVPSTNELAAFHRI---NPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp HHHHHHHTTSSC--T--TSCBCCHHHHHHHTTC---CHHHHHHHHHHHHTTTSEEEET
T ss_pred HHHHHHHhCCCC--C--CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 344444455443 2 3556 89999999999 6889999999999999999886
No 476
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=80.15 E-value=1.5 Score=33.09 Aligned_cols=74 Identities=14% Similarity=0.236 Sum_probs=50.3
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhc--------CCCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEe
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSAL--------EFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYA 100 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~--------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~ 100 (359)
+.++-..++=|+..|.. +|.+.-+|.+.+ ++ ++..+...|+.|...|+++..... .+.+ ..-.|+
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~-~~~~~~rk~Y~ 80 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGD-ESQGGRRKYYR 80 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC-----CCEEEEE
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeec-cCCCCCceEEE
Confidence 34444455555666665 789999998887 45 688999999999999999976310 0001 113599
Q ss_pred cCccchhhh
Q 043623 101 LTSASKLLL 109 (359)
Q Consensus 101 ~t~~~~~l~ 109 (359)
+|+.|+...
T Consensus 81 LT~~G~~~l 89 (116)
T 3f8b_A 81 LTEIGHENM 89 (116)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 999988443
No 477
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=79.92 E-value=6.6 Score=32.37 Aligned_cols=95 Identities=11% Similarity=0.125 Sum_probs=56.3
Q ss_pred eEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC----CCCccEEEecchhccCChhH
Q 043623 197 SLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS----IPSADAFLFKLIFHDYDDEV 269 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~----~~~~D~i~~~~vlh~~~d~~ 269 (359)
+||-.| |+|.++..+++.+ .+.++++++. ++...... .+++++.+|+.++ +.++|+++.+..........
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~ 78 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEK 78 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTS
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCccccch
Confidence 455444 5566665555543 3468888887 33333322 6799999999873 23589888776543222222
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 270 CLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 270 ~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.....+++.++++.. ..++++++..
T Consensus 79 ~~~~~~~l~~a~~~~-~~~~~v~~SS 103 (221)
T 3ew7_A 79 HVTSLDHLISVLNGT-VSPRLLVVGG 103 (221)
T ss_dssp HHHHHHHHHHHHCSC-CSSEEEEECC
T ss_pred HHHHHHHHHHHHHhc-CCceEEEEec
Confidence 345566777777652 1467776644
No 478
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=79.89 E-value=7.5 Score=29.90 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=53.0
Q ss_pred CeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CCCccEEEecchhccCC
Q 043623 196 SSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IPSADAFLFKLIFHDYD 266 (359)
Q Consensus 196 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~~~D~i~~~~vlh~~~ 266 (359)
.+|+=+|||. |......+.. .+..++++|. ++.++.++. ..+.++.+|..++ ...+|+++..- -+
T Consensus 8 ~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~----~~ 81 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTI----PN 81 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECC----SC
T ss_pred CCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEEC----CC
Confidence 5789999875 4443433433 3568999998 666665543 5678888998762 12488887763 12
Q ss_pred hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 267 DEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 267 d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
+.....+.. ..+.+.| +.+++.
T Consensus 82 ~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 82 GYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp HHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred hHHHHHHHH-HHHHHCC---CCeEEE
Confidence 333333444 4445666 566554
No 479
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=79.17 E-value=0.87 Score=34.58 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=51.2
Q ss_pred HHHHHHHHcCcccccccCCCCCCHHHHHhhcC------CCCCCcchHHHHHHHHhccCceeeccccCCCCC-CCceEecC
Q 043623 30 IFLKCAVELGIPDIIHKRGRPVTLPELVSALE------FQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREE-ENEAYALT 102 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~~LA~~~~------~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~-~~~~~~~t 102 (359)
++++-..++-|+..|.. +|.+.-+|++.++ + ++..+-..|+.|...|+++..... .+.+ ..-.|++|
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~-~~~~~~rk~Y~lT 82 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSV-NEKGQQLTVYHIT 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEE-C-CCCEEEEEEEC
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeee-cCCCCCceEEEEC
Confidence 34444555556667765 7899999998876 6 468999999999999999976310 0000 11369999
Q ss_pred ccchhhh
Q 043623 103 SASKLLL 109 (359)
Q Consensus 103 ~~~~~l~ 109 (359)
+.|+...
T Consensus 83 ~~G~~~l 89 (117)
T 3elk_A 83 DAGKKFL 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988433
No 480
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=79.17 E-value=1.2 Score=35.29 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=42.2
Q ss_pred HHHHcCcccccccCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHHhccCceeecc
Q 043623 34 CAVELGIPDIIHKRGRPVTLPELVSAL-----EFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~~LA~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+.-+.-|++.|..++++.|++||.+.+ ++ +..-+-|.|+.|+..|++.+..
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEE
Confidence 455566788886555799999999998 56 6789999999999999999875
No 481
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=79.11 E-value=0.91 Score=35.40 Aligned_cols=49 Identities=12% Similarity=0.285 Sum_probs=39.7
Q ss_pred HHcCcccccccCC-CCCCHHHHHhhc-----CCCCCCcchHHHHHHHHhccCceeecc
Q 043623 36 VELGIPDIIHKRG-RPVTLPELVSAL-----EFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 36 ~~lglf~~L~~~~-~~~t~~~LA~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
-+.-|++.|..++ ++.|++||.+.+ ++ +..-+-|-|+.|...|++.+..
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 3455677776544 689999999998 56 6789999999999999999875
No 482
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=79.10 E-value=0.83 Score=43.66 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=49.2
Q ss_pred cCcccccccC-CCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKR-GRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~-~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..|..+ +++.|..+||+++++ +...+.|+++.|...|+|.+....+.++ .-...+|+.|+.+.
T Consensus 407 ~~vl~~l~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~le~~g~v~r~~~~~D~R--~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 407 IYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQDER--TVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCSSSS--CCEEECCSSHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCC--eEEEEECHHHHHHH
Confidence 4566677552 157999999999999 6899999999999999999875211111 13577788776544
No 483
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=78.94 E-value=10 Score=28.60 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=49.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CCCccEEEecchhcc
Q 043623 195 LSSLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IPSADAFLFKLIFHD 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~~~D~i~~~~vlh~ 264 (359)
..+|+=+|+|. .+..+++.. .+.+++++|. ++.++.+.....+.++.+|..++ ...+|+++..-
T Consensus 4 ~m~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 4 GMYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp -CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 35788888754 444443322 3468999997 55444433222466777776541 33589888773
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
++......+..+.+.+++ +++++
T Consensus 78 -~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp -SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred -CCchHHHHHHHHHHHcCC----CEEEE
Confidence 222333345555566776 46554
No 484
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=78.75 E-value=7.4 Score=33.70 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=58.0
Q ss_pred CeEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCC-CCCCccEEEecchhccCChhHHH
Q 043623 196 SSLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQ-SIPSADAFLFKLIFHDYDDEVCL 271 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~-~~~~~D~i~~~~vlh~~~d~~~~ 271 (359)
.+||-.| + |.++..++++. .+.++++++. +....... ..+++++.+|..+ ...++|+|+.........+....
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccccHHHH
Confidence 5799999 4 88888877754 2457888887 32222111 3578999999887 44568998887665544444444
Q ss_pred HHHHHHHHhcCCCCCCceEEEEee
Q 043623 272 KLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 272 ~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.+++.+.+.-.. -.+++.+..
T Consensus 83 ~l~~a~~~~~~~---~~~~v~~Ss 103 (286)
T 3ius_A 83 ALGDQIAARAAQ---FRWVGYLST 103 (286)
T ss_dssp HHHHHHHHTGGG---CSEEEEEEE
T ss_pred HHHHHHHhhcCC---ceEEEEeec
Confidence 555555443122 256665543
No 485
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=78.75 E-value=2.2 Score=39.63 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-------CCCeEEEeechH
Q 043623 193 DGLSSLVEVGGGTGSFARIISEAF-------PSIKCSVLELPH 228 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~ 228 (359)
+.+.+|+|+|+|+|.++..+++.. ..++++.+|..+
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 345689999999999999887652 345899999843
No 486
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=78.17 E-value=0.61 Score=35.50 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=38.6
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCC-CCcchHHHHHHHHhccCceeecc
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQP-NKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
++.++..|... +|.|..+||+.++.+. -++..+.++|+-|...|+|.+..
T Consensus 12 q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 12 EWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 34455556553 6899999999997410 05789999999999999999986
No 487
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=77.81 E-value=1.3 Score=40.94 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=44.5
Q ss_pred HcCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecC
Q 043623 37 ELGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALT 102 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t 102 (359)
+..|++.|.. +|.++++|++++|+ +...+...|-.|.-.|++.... ++.|+++
T Consensus 330 ~~~vl~~l~~--~~~~~D~l~~~~gl---~~~~v~~~L~~LEl~G~v~~~~--------Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGP--SPVGIDDLIRLSGI---SPAVVRTILLELELAGRLERHG--------GSLVSLS 382 (382)
T ss_dssp HHHHHHHCCS--SCEEHHHHHHHHCC---CHHHHHHHHHHHHHTTCCEECT--------TSEEEC-
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEeCC--------CceEecC
Confidence 3458888874 79999999999999 5789999999999999999886 5777763
No 488
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=77.57 E-value=3 Score=35.73 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=43.3
Q ss_pred cCcccccccCCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCc
Q 043623 38 LGIPDIIHKRGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTS 103 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~ 103 (359)
.-|.-.|.. ++.|.++||+.+|+ ++.-+...|.-|...|+|.+.. ++...+..
T Consensus 168 ~~l~~~l~~--~~~t~~~la~~~~l---~~~~V~~~l~~L~~~~~v~~~~--------~~~~~~~~ 220 (232)
T 2qlz_A 168 AILHYLLLN--GRATVEELSDRLNL---KEREVREKISEMARFVPVKIIN--------DNTVVLDE 220 (232)
T ss_dssp HHHHHHHHS--SEEEHHHHHHHHTC---CHHHHHHHHHHHTTTSCEEEET--------TTEEEECH
T ss_pred HHHHHHHhc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhcCCeEEec--------CCeEEecH
Confidence 444555654 89999999999999 5799999999999999998776 57776654
No 489
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=77.52 E-value=6.4 Score=31.40 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=39.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCceEEeCCCCC
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPSIKCSVLELPHVIADLPETDNLKFIAGDMNQ 248 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~i~~a~~~~rv~~~~~d~~~ 248 (359)
-..-|+|+|=|+|..=-++.+.+|+.++.++|..-..--....+--.++.||+.+
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHH
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHH
Confidence 3478999999999999999999999999999952111000012334567777766
No 490
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=77.34 E-value=23 Score=29.18 Aligned_cols=135 Identities=10% Similarity=0.169 Sum_probs=70.2
Q ss_pred eEEEEcCCchHHHHHHHHH---CCCCeEEEeec-hH-HHhcCC-CCCCceEEeCCCCCC------CCCccEEEecchhcc
Q 043623 197 SLVEVGGGTGSFARIISEA---FPSIKCSVLEL-PH-VIADLP-ETDNLKFIAGDMNQS------IPSADAFLFKLIFHD 264 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~---~p~~~~~~~D~-~~-~i~~a~-~~~rv~~~~~d~~~~------~~~~D~i~~~~vlh~ 264 (359)
+||-.| |+|.++..+++. ..+.++++++. ++ .++... ...++.++.+|+.++ +.+.|+++.+-...
T Consensus 7 ~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~- 84 (221)
T 3r6d_A 7 YITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES- 84 (221)
T ss_dssp EEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC-
T ss_pred EEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC-
Confidence 466555 455555555443 24678888887 44 333221 357899999999872 23579888765432
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCceEEEEeeecCCCCCCchHHHHHHHhhhhhhhhcC-CcccCHHHHHHHHHhcCCcee
Q 043623 265 YDDEVCLKLLKNCREAVASSDGREKVIIVDIVVNEKKDKPEITEAKLLYDALMMTCVP-GIERSEKEWERLFFDAGFTSY 343 (359)
Q Consensus 265 ~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~t~~e~~~ll~~aGf~~~ 343 (359)
+-+ .+++.++++..+ .++++.+............. ...... ..+ .-..+....+.++++.|+...
T Consensus 85 --n~~----~~~~~~~~~~~~-~~~iv~iSs~~~~~~~~~~~---~~~~~~----~~~~~y~~~K~~~e~~~~~~~i~~~ 150 (221)
T 3r6d_A 85 --GSD----MASIVKALSRXN-IRRVIGVSMAGLSGEFPVAL---EKWTFD----NLPISYVQGERQARNVLRESNLNYT 150 (221)
T ss_dssp --HHH----HHHHHHHHHHTT-CCEEEEEEETTTTSCSCHHH---HHHHHH----TSCHHHHHHHHHHHHHHHHSCSEEE
T ss_pred --Chh----HHHHHHHHHhcC-CCeEEEEeeceecCCCCccc---cccccc----ccccHHHHHHHHHHHHHHhCCCCEE
Confidence 111 333333333210 36777665543332222101 001100 000 111245667788888898876
Q ss_pred eEEe
Q 043623 344 KITP 347 (359)
Q Consensus 344 ~~~~ 347 (359)
-+.|
T Consensus 151 ~vrp 154 (221)
T 3r6d_A 151 ILRL 154 (221)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6655
No 491
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=76.97 E-value=2.3 Score=32.65 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHcCcccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 31 FLKCAVELGIPDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.|...+..|-+. + |..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 19 ~l~~~I~~g~~~--~--G~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 19 RIKNEVATDVLS--A--NDQLPSVRETALQEKI---NPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp HHHHHHHTTSSC--T--TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCC--C--CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 344445555443 1 3556 99999999999 6899999999999999999886
No 492
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=76.88 E-value=11 Score=28.66 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=46.5
Q ss_pred CeEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CCCccEEEecchhccC
Q 043623 196 SSLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IPSADAFLFKLIFHDY 265 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~~~D~i~~~~vlh~~ 265 (359)
.+|+-+|||. ++..+++.. .+.+++++|. ++.++.++. ..+.++.+|..++ ..++|+++..--
T Consensus 7 ~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~---- 79 (141)
T 3llv_A 7 YEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLITGS---- 79 (141)
T ss_dssp CSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEECCS----
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEecC----
Confidence 5789999864 444444332 2568999998 555555442 3577888998772 235888876532
Q ss_pred ChhHHHHHHHHHHH
Q 043623 266 DDEVCLKLLKNCRE 279 (359)
Q Consensus 266 ~d~~~~~iL~~~~~ 279 (359)
+++....+...+++
T Consensus 80 ~~~~n~~~~~~a~~ 93 (141)
T 3llv_A 80 DDEFNLKILKALRS 93 (141)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 33433444444443
No 493
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=76.76 E-value=1.3 Score=34.70 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=41.0
Q ss_pred HHHHcCcccccccCCCCCCHHHHHhhc-----CCCCCCcchHHHHHHHHhccCceeecc
Q 043623 34 CAVELGIPDIIHKRGRPVTLPELVSAL-----EFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~~LA~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
+.-+.-|++.|..++++.|++||.+.+ ++ +..-+-|-|+.|+..|++.+..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 344556777776555799999999887 45 6789999999999999999875
No 494
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=76.66 E-value=1.4 Score=39.96 Aligned_cols=56 Identities=11% Similarity=0.224 Sum_probs=43.4
Q ss_pred Cccccccc-CCCCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCcc
Q 043623 39 GIPDIIHK-RGRPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSA 104 (359)
Q Consensus 39 glf~~L~~-~~~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.|++.|.+ .+.++|.++||+++|+ +...+.+-++.|...|+...... +..|++.+.
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgv---Sr~aV~k~i~~L~~~G~~i~~~~-------~~GY~L~~~ 63 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNI---SRTAVKKVIDQLKLEGCKIDSVN-------HKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEEET-------TTEEEEEEC
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCC---CHHHHHHHHHHHHhcCCeEEEeC-------CCeEEEecC
Confidence 45666632 1358999999999999 78999999999999999665421 357988764
No 495
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=76.01 E-value=8.3 Score=34.98 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=57.7
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEeCC------CCCC-----CCCccEEEe
Q 043623 192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIAGD------MNQS-----IPSADAFLF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d------~~~~-----~~~~D~i~~ 258 (359)
..++.+||-+|+|. |.++..+++...--+++++|. ++-.+.+++..--.++..+ ..+. ..++|+++-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 56788999999875 888999999764238899986 4444444321101122111 1110 034888875
Q ss_pred cchhccCChhHHHHHHHHHHHhcCCCCCCceEEEEee
Q 043623 259 KLIFHDYDDEVCLKLLKNCREAVASSDGREKVIIVDI 295 (359)
Q Consensus 259 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gG~lli~e~ 295 (359)
.- ..+ ..+..+.+.|+| +|+++++-.
T Consensus 249 ~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~ 274 (356)
T 1pl8_A 249 CT-----GAE---ASIQAGIYATRS---GGTLVLVGL 274 (356)
T ss_dssp CS-----CCH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred CC-----CCh---HHHHHHHHHhcC---CCEEEEEec
Confidence 53 222 346778889999 999988754
No 496
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=75.96 E-value=1.3 Score=38.58 Aligned_cols=67 Identities=13% Similarity=0.273 Sum_probs=48.4
Q ss_pred cCcccccccCC-CCCCHHHHHhhcCCCCCCcchHHHHHHHHhccCceeeccccCCCCCCCceEecCccchhhh
Q 043623 38 LGIPDIIHKRG-RPVTLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTKVHNSREEENEAYALTSASKLLL 109 (359)
Q Consensus 38 lglf~~L~~~~-~~~t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.++..|..++ ++.|..+||+.+++ ++..+.++|+-|...|++.+....+ |.=.-...+|+.|+.+.
T Consensus 37 ~~vL~~L~~~~~~~~~~~el~~~l~~---~~~t~t~~l~rLe~~G~i~R~~~~~--DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 37 FILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKI--DERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSS--STTSEEEECCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCC--CCCeEEEEECHHHHHHH
Confidence 44556665422 57999999999999 6899999999999999999875211 00012467888877544
No 497
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=75.74 E-value=14 Score=30.78 Aligned_cols=86 Identities=9% Similarity=0.176 Sum_probs=51.6
Q ss_pred eEEEEcCCchHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CCCccEEEecchhccCC
Q 043623 197 SLVEVGGGTGSFARIISEAF--PSIKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IPSADAFLFKLIFHDYD 266 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~~~D~i~~~~vlh~~~ 266 (359)
+|+=+|+ |.++..+++.. .+..++++|. ++.++...+...+.++.+|..++ ...+|++++.- +
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~-----~ 74 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILT-----P 74 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC-----S
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec-----C
Confidence 4666776 56666665543 3568999998 55555433334578899998862 33589888763 3
Q ss_pred hhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 267 DEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 267 d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
++..-.++..+.+.+.| ..+++.
T Consensus 75 ~d~~n~~~~~~a~~~~~---~~~iia 97 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFG---VKRVVS 97 (218)
T ss_dssp CHHHHHHHHHHHHHTSC---CCEEEE
T ss_pred CcHHHHHHHHHHHHHcC---CCeEEE
Confidence 33333445555555545 455554
No 498
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=75.73 E-value=12 Score=34.60 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=61.1
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCceEEe---CCC-CC------CCCCccEEEec
Q 043623 192 FDGLSSLVEVGGGT-GSFARIISEAFPSIKCSVLEL-PHVIADLPETDNLKFIA---GDM-NQ------SIPSADAFLFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~i~~a~~~~rv~~~~---~d~-~~------~~~~~D~i~~~ 259 (359)
+.++.+||.+|+|. |.++..+++...-.+++++|. ++-.+.+++.. .+++. .|+ .+ .-..+|+++-.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEVDCGVDA 261 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 67788999999877 889999998763228999996 55555554311 22222 121 11 01148998766
Q ss_pred chhccCC--h----hHHHHHHHHHHHhcCCCCCCceEEEEeee
Q 043623 260 LIFHDYD--D----EVCLKLLKNCREAVASSDGREKVIIVDIV 296 (359)
Q Consensus 260 ~vlh~~~--d----~~~~~iL~~~~~~L~p~~~gG~lli~e~~ 296 (359)
---.... . ......++.+.+.|++ +|+++++-..
T Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---gG~iv~~G~~ 301 (398)
T 2dph_A 262 VGFEAHGLGDEANTETPNGALNSLFDVVRA---GGAIGIPGIY 301 (398)
T ss_dssp SCTTCBCSGGGTTSBCTTHHHHHHHHHEEE---EEEEECCSCC
T ss_pred CCCccccccccccccccHHHHHHHHHHHhc---CCEEEEeccc
Confidence 4321100 0 0001347888899999 8999876543
No 499
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=75.55 E-value=3 Score=31.86 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=38.9
Q ss_pred HHHHHHHcCcccccccCCCCC-CHHHHHhhcCCCCCCcchHHHHHHHHhccCceeecc
Q 043623 31 FLKCAVELGIPDIIHKRGRPV-TLPELVSALEFQPNKRNCLRRIMRLLDHSGFFSTTK 87 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~-t~~~LA~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 87 (359)
.|...+..|-+. + |..+ |..+||+.+|+ +..-+++-+..|...|++....
T Consensus 21 ~i~~~I~~g~~~--~--g~~Lps~~~La~~~~v---Sr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 21 WMKKQMITGEWK--G--EDKLPSVREMGVKLAV---NPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp HHHHHHHTTSSC--T--TCBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCC--C--CCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEec
Confidence 344445555554 2 3445 79999999999 6899999999999999999886
No 500
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=75.36 E-value=20 Score=30.08 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC--CeEEEeec-hHHHhcCCCCCCceEEeCCCCCC-------CCCccEEEecchhc
Q 043623 194 GLSSLVEVGGGTGSFARIISEAFPS--IKCSVLEL-PHVIADLPETDNLKFIAGDMNQS-------IPSADAFLFKLIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~i~~a~~~~rv~~~~~d~~~~-------~~~~D~i~~~~vlh 263 (359)
...+|+=+|+ |..+..+++..-. . ++++|. ++.++.+. ..+.++.+|..++ ...+|++++..
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~--- 79 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDL--- 79 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECC---
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC---
Confidence 3468998988 5777777776533 4 888887 55555544 5588999998762 33589888763
Q ss_pred cCChhHHHHHHHHHHHhcCCCCCCceEEE
Q 043623 264 DYDDEVCLKLLKNCREAVASSDGREKVII 292 (359)
Q Consensus 264 ~~~d~~~~~iL~~~~~~L~p~~~gG~lli 292 (359)
++++.-..+....+.+.| +.+++.
T Consensus 80 --~~d~~n~~~~~~a~~~~~---~~~iia 103 (234)
T 2aef_A 80 --ESDSETIHCILGIRKIDE---SVRIIA 103 (234)
T ss_dssp --SCHHHHHHHHHHHHHHCS---SSEEEE
T ss_pred --CCcHHHHHHHHHHHHHCC---CCeEEE
Confidence 333323334444555777 446655
Done!