BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043626
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 53 RLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
R +LD+ CG+G+ L+E G++ +GLD+ + ML +A
Sbjct: 43 RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVA 79
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 53 RLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
R +LDIGCG G E E G + IG+DI++ M+
Sbjct: 43 RRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFC 79
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
+LD+GCG G LS G++ +G+DIS+ + ER
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKER 94
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 11 PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS 70
P+ + D AR + I D +++ +E LL L +LD+ CG+G+ L
Sbjct: 18 PDQYADGEAARVW--QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 75
Query: 71 ENGHQWIGLDISQSMLNIALE 91
E G + +D S ML AL+
Sbjct: 76 EEGFSVMSVDASDKMLKYALK 96
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With
S- Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With
S- Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With
S- Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With
S- Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 11 PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS 70
P+ + D AR + I D +++ +E LL L +LD+ CG+G+ L
Sbjct: 18 PDQYADGEAARVW--QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 75
Query: 71 ENGHQWIGLDISQSMLNIALE 91
E G +D S ML AL+
Sbjct: 76 EEGFSVTSVDASDKMLKYALK 96
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 11 PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS 70
P+ + D AR + I D +++ +E LL L +LD+ CG+G+ L
Sbjct: 19 PDQYADGEAARVW--QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 76
Query: 71 ENGHQWIGLDISQSMLNIALE 91
E G +D S ML AL+
Sbjct: 77 EEGFSVTSVDASDKMLKYALK 97
>pdb|1R74|A Chain A, Crystal Structure Of Human Glycine N-Methyltransferase
pdb|1R74|B Chain B, Crystal Structure Of Human Glycine N-Methyltransferase
Length = 294
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 11 PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS 70
P+ + D AR + I D +++ +E LL L + +LD+ CG+G+ L
Sbjct: 18 PDQYADGEAARVW--QLYIGDTRSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVDSIMLV 75
Query: 71 ENGHQWIGLDISQSMLNIALE 91
E G +D S ML AL+
Sbjct: 76 EEGFSVTSVDASDKMLKYALK 96
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 11 PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS 70
P+ + D AR + I D +++ +E LL L +LD+ CG+G+ L
Sbjct: 18 PDQYADGEAARVW--QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 75
Query: 71 ENGHQWIGLDISQSMLNIALE 91
E G +D S ML AL+
Sbjct: 76 EEGFSVTSVDASDKMLKYALK 96
>pdb|2AZT|A Chain A, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
pdb|2AZT|B Chain B, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
Length = 295
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 11 PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLS 70
P+ + D AR + I D +++ +E LL L + +LD+ CG+G+ L
Sbjct: 19 PDQYADGEAARVW--QLYIGDTRSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVDSIMLV 76
Query: 71 ENGHQWIGLDISQSMLNIALE 91
E G +D S ML AL+
Sbjct: 77 EEGFSVTSVDASDKMLKYALK 97
>pdb|3GGD|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Yp_325210.1) From Anabaena Variabilis Atcc 29413 At
2.11 A Resolution
Length = 245
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
L+D CG+G + LS+ + IGLD+S+S L IA
Sbjct: 60 LIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIA 94
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 11 PEIF--------YDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGS 62
PEI+ +D AR +I Q RAL G P +LD+GC
Sbjct: 26 PEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRAL--------GRPLNVLDLGCAQ 77
Query: 63 GLSGETLSENGHQWIGLDISQSMLNI 88
G +L+ G +G+D Q +N+
Sbjct: 78 GFFSLSLASKGATIVGIDFQQENINV 103
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 11 PEIF--------YDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGS 62
PEI+ +D AR +I Q RAL G P +LD+GC
Sbjct: 26 PEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRAL--------GRPLNVLDLGCAQ 77
Query: 63 GLSGETLSENGHQWIGLDISQSMLNI 88
G +L+ G +G+D Q +N+
Sbjct: 78 GFFSLSLASKGATIVGIDFQQENINV 103
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER--EVEXXXXXXXXXXXXXXRPG 112
+ DIGCG+G + L+++ ++ G+D+S+ L IA E+ E P
Sbjct: 37 IADIGCGTGTATLLLADH-YEVTGVDLSEEXLEIAQEKAXETNRHVDFWVQDXRELELPE 95
Query: 113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162
VD AI+I LC++ + +K F S R L G + +F ++
Sbjct: 96 PVD-AITI-----LCDSLNYL-QTEADVKQTFDSAARLLTDGGKLLFDVH 138
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 11 PEIF--------YDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGS 62
PEI+ +D AR +I Q RAL G P +LD+GC
Sbjct: 26 PEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRAL--------GRPLNVLDLGCAQ 77
Query: 63 GLSGETLSENGHQWIGLDISQSMLNI 88
G +L+ G +G+D Q +N+
Sbjct: 78 GFFSLSLASKGATIVGIDFQQENINV 103
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
+LDIGCGSG L+ G+ G+DI+ + +A
Sbjct: 34 ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLA 68
>pdb|3CGG|A Chain A, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
pdb|3CGG|B Chain B, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
Length = 195
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
+LD GCG G G LS+ GH +G D+ +++ A
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYA 84
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 13/139 (9%)
Query: 20 ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGL 79
A+ + ++ D + + + +LL L + +LD+GCG+G E ++++G + +G
Sbjct: 26 AKNFWDATLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGT 85
Query: 80 DISQSMLNIALEREVEXXXXXXXXXXXXXXRPGVVDGAISISAVQWLCNADKASHEPRLR 139
D + + + A + +P +D S + + W+ EP
Sbjct: 86 DNAATXIEKARQNYPHLHFDVADARNFRVDKP--LDAVFSNAXLHWV-------KEP--- 133
Query: 140 LKAFFGSLYRCLARGARAV 158
+A S+++ L G R V
Sbjct: 134 -EAAIASIHQALKSGGRFV 151
>pdb|3PX3|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123a
Mutant In Complex With Sah And Dtdp-Quip3n
pdb|3PX3|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123a
Mutant In Complex With Sah And Dtdp-Quip3n
Length = 263
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
LLD+ CG+G+ L+++ GL++S ML IA R
Sbjct: 54 LLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRR 91
>pdb|3PFG|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase
Tylm1 From Streptomyces Fradiae In Complex With Sam And
Dtdp-Phenol
pdb|3PFH|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase
Tylm1 From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
pdb|3PFH|D Chain D, X-Ray Crystal Structure The N,N-Dimethyltransferase
Tylm1 From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
Length = 263
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
LLD+ CG+G+ L+++ GL++S ML IA R
Sbjct: 54 LLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRR 91
>pdb|3PX2|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123n
Mutant In Complex With Sah And Dtdp-Quip3n
pdb|3PX2|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123n
Mutant In Complex With Sah And Dtdp-Quip3n
Length = 262
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
LLD+ CG+G+ L+++ GL++S ML IA R
Sbjct: 54 LLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRR 91
>pdb|3BXO|A Chain A, Crystal Structure Of Streptomyces Venezuelae Desvi
pdb|3BXO|B Chain B, Crystal Structure Of Streptomyces Venezuelae Desvi
Length = 239
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER 92
LLD+ CG+G E ++ GL++S+ ML A +R
Sbjct: 44 LLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKR 81
>pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
Length = 323
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDI 81
AKL E + +L PDD L++DI GS +G +WI ++
Sbjct: 239 AKLPEFFIRMLTEPDD----LVVDIFGGSNTTGLVAERESRKWISFEM 282
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE 91
+LD+ CG G L + G + +G+DIS+ + A E
Sbjct: 42 VLDLACGVGGFSFLLEDYGFEVVGVDISEDXIRKARE 78
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 32 IQAKLSERALELL-----ALPDDGVPR--LLLDIGCGSG----LSGETLSENGHQWIGLD 80
I A +++ LE LP DG +LD+GCG+G L+ + + E+G + IG+D
Sbjct: 57 ILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHG-KVIGVD 115
Query: 81 ISQSMLNIA 89
+ + L +A
Sbjct: 116 MLDNQLEVA 124
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 42 ELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIA 89
EL + D + +LD+GCG G +E+G + +G+D+S+ ML A
Sbjct: 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA 83
>pdb|3E8S|A Chain A, Crystal Structure Of Putative Sam Dependent
Methyltransferase In Complex With Sah (Np_744700.1)
From Pseudomonas Putida Kt2440 At 2.10 A Resolution
Length = 227
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
P +LD+GCG G L++ G + +G+D +++++ A
Sbjct: 53 PERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAA 90
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 55 LLDIGCGSGLSGETLSENGHQWIGLD 80
+LDIGC SG G + ENG + G++
Sbjct: 36 VLDIGCSSGALGAAIKENGTRVSGIE 61
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-C
Length = 217
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 53 RLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER 92
R ++D+GCG G + L ++ Q G+D+S L IA ER
Sbjct: 31 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQER 72
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-Cn
Length = 202
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 53 RLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER 92
R ++D+GCG G + L ++ Q G+D+S L IA ER
Sbjct: 21 RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQER 62
>pdb|3H2B|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
pdb|3H2B|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
Length = 203
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 50 GVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIA 89
GV ++LD+G G+G L+ GHQ GL+ + ++ +A
Sbjct: 40 GVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELA 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,688,421
Number of Sequences: 62578
Number of extensions: 260304
Number of successful extensions: 650
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 35
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)