Query 043626
Match_columns 291
No_of_seqs 340 out of 2512
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1541 Predicted protein carb 100.0 1.9E-75 4.2E-80 493.4 20.9 270 1-291 1-270 (270)
2 PF12589 WBS_methylT: Methyltr 99.9 1.2E-23 2.6E-28 156.4 5.8 87 202-290 1-87 (87)
3 COG2226 UbiE Methylase involve 99.9 5.8E-21 1.3E-25 167.7 12.6 129 17-160 18-155 (238)
4 PF01209 Ubie_methyltran: ubiE 99.8 1.9E-20 4E-25 165.3 10.3 132 13-160 11-152 (233)
5 PLN02233 ubiquinone biosynthes 99.8 1.9E-19 4.2E-24 161.6 16.2 133 14-162 38-183 (261)
6 PRK10258 biotin biosynthesis p 99.8 4.4E-19 9.6E-24 158.1 15.6 129 18-164 15-143 (251)
7 PLN02244 tocopherol O-methyltr 99.8 3.1E-18 6.7E-23 159.4 17.9 150 29-190 94-280 (340)
8 PLN02490 MPBQ/MSBQ methyltrans 99.8 1.2E-17 2.6E-22 154.5 18.7 162 12-188 77-256 (340)
9 PF08241 Methyltransf_11: Meth 99.8 2E-18 4.2E-23 129.7 10.3 92 56-159 1-95 (95)
10 TIGR02752 MenG_heptapren 2-hep 99.8 1.3E-17 2.7E-22 146.7 15.8 129 18-161 13-151 (231)
11 KOG2361 Predicted methyltransf 99.8 3.9E-19 8.5E-24 153.4 5.7 187 40-265 61-259 (264)
12 PLN02396 hexaprenyldihydroxybe 99.8 1.3E-17 2.9E-22 153.5 14.1 120 52-183 132-284 (322)
13 PRK11036 putative S-adenosyl-L 99.8 1.3E-17 2.9E-22 149.1 13.6 102 52-164 45-152 (255)
14 PRK14103 trans-aconitate 2-met 99.7 2.6E-17 5.7E-22 147.2 15.2 121 20-161 4-126 (255)
15 PRK01683 trans-aconitate 2-met 99.7 4.9E-17 1.1E-21 145.5 15.3 123 20-161 6-130 (258)
16 PTZ00098 phosphoethanolamine N 99.7 8.1E-17 1.7E-21 144.8 16.4 136 35-183 39-197 (263)
17 COG4106 Tam Trans-aconitate me 99.7 3.3E-17 7.3E-22 139.4 11.4 113 37-162 16-130 (257)
18 TIGR03587 Pse_Me-ase pseudamin 99.7 2.4E-16 5.2E-21 136.6 14.4 135 11-160 5-141 (204)
19 PRK15068 tRNA mo(5)U34 methylt 99.7 3.4E-16 7.3E-21 144.6 15.8 137 38-190 112-276 (322)
20 COG2227 UbiG 2-polyprenyl-3-me 99.7 6.3E-17 1.4E-21 140.5 10.0 103 52-166 60-166 (243)
21 PF13489 Methyltransf_23: Meth 99.7 1E-16 2.2E-21 132.2 10.8 95 52-163 23-117 (161)
22 PLN02336 phosphoethanolamine N 99.7 3.9E-16 8.4E-21 151.5 16.2 133 36-183 254-409 (475)
23 PRK05785 hypothetical protein; 99.7 4E-16 8.6E-21 137.3 14.6 128 14-161 14-146 (226)
24 TIGR00452 methyltransferase, p 99.7 8.7E-16 1.9E-20 140.9 17.1 136 38-189 111-274 (314)
25 TIGR02072 BioC biotin biosynth 99.7 1.1E-15 2.3E-20 134.2 16.5 130 19-163 5-137 (240)
26 PF13847 Methyltransf_31: Meth 99.7 5.4E-16 1.2E-20 127.9 13.4 99 52-163 4-112 (152)
27 PRK00216 ubiE ubiquinone/menaq 99.7 9.1E-16 2E-20 134.8 15.4 133 12-160 14-157 (239)
28 PF12847 Methyltransf_18: Meth 99.7 3.1E-16 6.7E-21 122.1 11.0 101 52-161 2-111 (112)
29 PF02353 CMAS: Mycolic acid cy 99.7 5E-16 1.1E-20 140.1 13.9 119 28-162 42-167 (273)
30 PRK11207 tellurite resistance 99.7 6.5E-16 1.4E-20 133.1 13.7 107 39-159 21-132 (197)
31 TIGR00740 methyltransferase, p 99.7 3.1E-15 6.6E-20 132.5 17.0 132 15-161 17-161 (239)
32 COG2230 Cfa Cyclopropane fatty 99.7 1.4E-15 3E-20 136.3 14.1 121 28-164 52-179 (283)
33 PRK08317 hypothetical protein; 99.7 5E-15 1.1E-19 129.7 17.5 112 35-161 6-124 (241)
34 PRK15451 tRNA cmo(5)U34 methyl 99.7 4.5E-15 9.7E-20 132.3 16.6 133 12-161 17-164 (247)
35 KOG1540 Ubiquinone biosynthesi 99.7 1.8E-15 3.9E-20 131.8 13.4 132 18-164 68-217 (296)
36 TIGR00477 tehB tellurite resis 99.7 1.5E-15 3.3E-20 130.6 12.7 108 39-160 21-132 (195)
37 KOG1270 Methyltransferases [Co 99.6 5.2E-16 1.1E-20 135.8 9.3 95 52-161 90-195 (282)
38 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 7E-15 1.5E-19 127.8 15.8 129 18-161 7-143 (223)
39 PF13649 Methyltransf_25: Meth 99.6 5.4E-16 1.2E-20 119.1 7.5 91 55-155 1-101 (101)
40 PRK11873 arsM arsenite S-adeno 99.6 6.4E-15 1.4E-19 132.9 15.1 120 52-183 78-225 (272)
41 TIGR00138 gidB 16S rRNA methyl 99.6 2.4E-14 5.3E-19 121.8 17.0 115 52-183 43-164 (181)
42 TIGR00537 hemK_rel_arch HemK-r 99.6 1.9E-14 4.1E-19 122.0 15.8 133 52-189 20-166 (179)
43 PF08242 Methyltransf_12: Meth 99.6 8.7E-17 1.9E-21 122.9 0.5 91 56-157 1-99 (99)
44 PRK00107 gidB 16S rRNA methylt 99.6 5.5E-14 1.2E-18 120.1 17.7 112 52-183 46-164 (187)
45 PLN02336 phosphoethanolamine N 99.6 6.9E-15 1.5E-19 142.7 13.3 137 35-183 24-177 (475)
46 PRK11705 cyclopropane fatty ac 99.6 1.9E-14 4.1E-19 135.9 15.7 121 27-163 146-269 (383)
47 COG4123 Predicted O-methyltran 99.6 5.4E-14 1.2E-18 123.9 17.3 145 52-201 45-208 (248)
48 PRK08287 cobalt-precorrin-6Y C 99.6 5.8E-14 1.2E-18 119.8 16.6 135 33-189 16-157 (187)
49 PRK12335 tellurite resistance 99.6 1E-14 2.2E-19 132.7 12.7 98 52-160 121-222 (287)
50 smart00828 PKS_MT Methyltransf 99.6 1.5E-14 3.2E-19 126.6 13.0 123 54-189 2-145 (224)
51 TIGR02469 CbiT precorrin-6Y C5 99.6 4.6E-14 1E-18 111.3 14.6 112 34-162 5-123 (124)
52 TIGR02021 BchM-ChlM magnesium 99.6 4.9E-14 1.1E-18 123.2 15.2 111 33-159 38-156 (219)
53 TIGR03840 TMPT_Se_Te thiopurin 99.6 6.2E-14 1.4E-18 122.2 14.8 101 52-161 35-152 (213)
54 PRK00121 trmB tRNA (guanine-N( 99.6 2.1E-14 4.6E-19 124.2 11.6 136 39-183 32-176 (202)
55 PF03848 TehB: Tellurite resis 99.6 1.7E-14 3.8E-19 123.0 10.2 109 40-162 22-134 (192)
56 PRK05134 bifunctional 3-demeth 99.6 1.1E-13 2.4E-18 121.9 15.5 101 52-163 49-153 (233)
57 TIGR03438 probable methyltrans 99.6 6.7E-14 1.4E-18 128.3 14.4 145 3-161 11-177 (301)
58 PRK04266 fibrillarin; Provisio 99.6 4.9E-13 1.1E-17 117.5 19.0 130 43-189 67-211 (226)
59 PRK11088 rrmA 23S rRNA methylt 99.6 5.6E-14 1.2E-18 127.0 13.1 108 32-162 70-182 (272)
60 PRK11188 rrmJ 23S rRNA methylt 99.5 1.7E-13 3.7E-18 119.2 15.1 133 52-194 52-194 (209)
61 PF05401 NodS: Nodulation prot 99.5 5.6E-14 1.2E-18 119.1 11.5 100 52-161 44-146 (201)
62 smart00138 MeTrc Methyltransfe 99.5 1.3E-13 2.8E-18 124.1 14.4 100 52-161 100-242 (264)
63 TIGR03534 RF_mod_PrmC protein- 99.5 3.1E-13 6.6E-18 120.0 16.5 140 35-183 75-236 (251)
64 PRK09328 N5-glutamine S-adenos 99.5 5.2E-13 1.1E-17 120.3 18.1 141 35-183 95-257 (275)
65 PRK00377 cbiT cobalt-precorrin 99.5 4E-13 8.6E-18 115.8 16.6 130 35-183 27-165 (198)
66 TIGR03704 PrmC_rel_meth putati 99.5 2.5E-13 5.4E-18 121.4 15.5 144 35-183 72-235 (251)
67 PRK13944 protein-L-isoaspartat 99.5 1.7E-13 3.6E-18 118.9 13.3 107 35-162 59-174 (205)
68 PF05175 MTS: Methyltransferas 99.5 1.6E-13 3.4E-18 115.5 12.0 105 52-164 32-143 (170)
69 PF08003 Methyltransf_9: Prote 99.5 3.6E-13 7.9E-18 121.1 14.5 126 52-190 116-269 (315)
70 PRK06922 hypothetical protein; 99.5 1.5E-13 3.2E-18 135.1 13.0 109 52-161 419-537 (677)
71 PRK06202 hypothetical protein; 99.5 1.5E-13 3.2E-18 121.2 11.4 97 52-159 61-165 (232)
72 PRK14967 putative methyltransf 99.5 8.3E-13 1.8E-17 115.9 16.0 140 39-185 27-181 (223)
73 PLN02585 magnesium protoporphy 99.5 7E-13 1.5E-17 121.9 15.9 113 35-162 128-250 (315)
74 PRK14968 putative methyltransf 99.5 1.7E-12 3.8E-17 110.0 17.2 128 52-183 24-168 (188)
75 COG4976 Predicted methyltransf 99.5 1.6E-14 3.4E-19 124.1 4.4 133 37-183 114-260 (287)
76 TIGR01983 UbiG ubiquinone bios 99.5 8.6E-13 1.9E-17 115.3 15.1 100 52-162 46-150 (224)
77 PRK14966 unknown domain/N5-glu 99.5 1.1E-12 2.4E-17 123.7 16.2 127 52-183 252-400 (423)
78 TIGR03533 L3_gln_methyl protei 99.5 1E-12 2.3E-17 119.4 15.4 124 52-183 122-269 (284)
79 PRK00517 prmA ribosomal protei 99.5 3.6E-13 7.7E-18 120.3 12.0 113 52-183 120-233 (250)
80 PRK13255 thiopurine S-methyltr 99.5 1E-12 2.2E-17 114.9 14.4 99 52-159 38-153 (218)
81 TIGR00091 tRNA (guanine-N(7)-) 99.5 3.1E-13 6.7E-18 116.2 10.8 125 52-182 17-152 (194)
82 TIGR00406 prmA ribosomal prote 99.5 1E-12 2.2E-17 119.8 14.7 125 35-183 147-278 (288)
83 TIGR02081 metW methionine bios 99.5 9.7E-13 2.1E-17 112.9 13.7 89 52-153 14-104 (194)
84 PRK07580 Mg-protoporphyrin IX 99.5 1.4E-12 3.1E-17 114.3 15.0 107 35-157 47-162 (230)
85 TIGR00080 pimt protein-L-isoas 99.5 5.4E-13 1.2E-17 116.4 12.2 108 34-162 63-178 (215)
86 TIGR01177 conserved hypothetic 99.5 2.1E-12 4.6E-17 119.8 16.4 136 35-181 169-309 (329)
87 PRK13942 protein-L-isoaspartat 99.5 7.8E-13 1.7E-17 115.3 12.7 109 33-162 61-177 (212)
88 PRK15001 SAM-dependent 23S rib 99.4 1.3E-12 2.7E-17 122.8 13.8 114 37-161 217-340 (378)
89 TIGR00438 rrmJ cell division p 99.4 2.4E-12 5.2E-17 109.9 14.1 123 52-183 33-165 (188)
90 PRK00312 pcm protein-L-isoaspa 99.4 1.5E-12 3.2E-17 113.3 12.9 109 33-162 63-176 (212)
91 PRK07402 precorrin-6B methylas 99.4 6.1E-12 1.3E-16 108.1 16.5 131 33-183 25-162 (196)
92 TIGR00536 hemK_fam HemK family 99.4 4.2E-12 9.2E-17 115.4 16.0 140 35-183 100-264 (284)
93 PTZ00146 fibrillarin; Provisio 99.4 6.3E-12 1.4E-16 113.5 16.8 142 31-189 112-272 (293)
94 PHA03411 putative methyltransf 99.4 1.8E-12 4E-17 115.9 12.7 129 52-182 65-208 (279)
95 KOG3010 Methyltransferase [Gen 99.4 9.9E-13 2.2E-17 114.0 10.4 98 52-164 34-140 (261)
96 COG2264 PrmA Ribosomal protein 99.4 2.3E-12 4.9E-17 116.5 13.0 131 33-183 148-283 (300)
97 PRK09489 rsmC 16S ribosomal RN 99.4 2.2E-12 4.8E-17 120.1 13.4 114 37-162 185-304 (342)
98 COG2890 HemK Methylase of poly 99.4 8.5E-12 1.8E-16 113.1 16.3 120 54-181 113-255 (280)
99 TIGR02716 C20_methyl_CrtF C-20 99.4 6.8E-12 1.5E-16 115.2 15.8 108 37-160 138-253 (306)
100 PRK01544 bifunctional N5-gluta 99.4 7.1E-12 1.5E-16 122.4 16.4 125 52-183 139-288 (506)
101 KOG2940 Predicted methyltransf 99.4 1.3E-12 2.9E-17 112.3 9.7 145 33-191 55-236 (325)
102 PF13659 Methyltransf_26: Meth 99.4 9.7E-13 2.1E-17 103.1 7.2 106 53-161 2-115 (117)
103 PF07021 MetW: Methionine bios 99.4 2.8E-12 6.1E-17 108.5 9.6 94 52-161 14-109 (193)
104 COG2242 CobL Precorrin-6B meth 99.4 5.1E-11 1.1E-15 100.3 16.8 127 35-182 21-154 (187)
105 KOG1271 Methyltransferases [Ge 99.4 3.3E-12 7.1E-17 106.3 9.5 142 32-182 47-199 (227)
106 PRK14121 tRNA (guanine-N(7)-)- 99.4 8.6E-12 1.9E-16 116.9 13.4 121 52-179 123-251 (390)
107 PRK11805 N5-glutamine S-adenos 99.3 2.4E-11 5.3E-16 111.6 15.1 122 53-182 135-280 (307)
108 PF06325 PrmA: Ribosomal prote 99.3 9.4E-12 2E-16 113.2 12.1 127 33-183 147-278 (295)
109 COG2518 Pcm Protein-L-isoaspar 99.3 9.7E-12 2.1E-16 106.7 11.2 108 34-162 58-170 (209)
110 KOG4300 Predicted methyltransf 99.3 5.7E-12 1.2E-16 106.9 9.6 99 52-162 77-183 (252)
111 PF03291 Pox_MCEL: mRNA cappin 99.3 1.7E-11 3.7E-16 113.4 13.6 103 52-161 63-186 (331)
112 PRK10901 16S rRNA methyltransf 99.3 5.1E-11 1.1E-15 114.3 17.2 129 32-163 228-374 (427)
113 PRK00811 spermidine synthase; 99.3 5.4E-11 1.2E-15 108.2 16.0 124 52-183 77-214 (283)
114 PLN03075 nicotianamine synthas 99.3 4E-11 8.7E-16 108.7 13.9 99 52-161 124-233 (296)
115 smart00650 rADc Ribosomal RNA 99.3 3.8E-11 8.2E-16 100.8 12.4 109 37-161 2-113 (169)
116 PLN02672 methionine S-methyltr 99.3 4E-11 8.6E-16 124.6 15.0 133 52-189 119-304 (1082)
117 PRK04457 spermidine synthase; 99.3 8.1E-11 1.8E-15 105.8 14.9 123 52-183 67-197 (262)
118 PRK13168 rumA 23S rRNA m(5)U19 99.3 1E-10 2.3E-15 112.7 16.4 140 33-193 282-432 (443)
119 cd02440 AdoMet_MTases S-adenos 99.3 4.2E-11 9.2E-16 89.5 10.5 97 54-160 1-103 (107)
120 PRK13256 thiopurine S-methyltr 99.3 1.4E-10 3.1E-15 101.6 14.7 102 52-162 44-164 (226)
121 PRK14902 16S rRNA methyltransf 99.3 3.2E-10 6.9E-15 109.4 18.5 139 33-174 235-392 (444)
122 PRK14901 16S rRNA methyltransf 99.3 1.5E-10 3.2E-15 111.4 15.5 166 33-203 237-430 (434)
123 PRK14903 16S rRNA methyltransf 99.2 6.8E-11 1.5E-15 113.5 12.6 141 32-176 221-381 (431)
124 PF01135 PCMT: Protein-L-isoas 99.2 2.2E-11 4.7E-16 105.8 8.3 110 33-163 57-174 (209)
125 PRK14904 16S rRNA methyltransf 99.2 1.5E-10 3.3E-15 111.6 14.7 136 33-173 235-389 (445)
126 PRK13943 protein-L-isoaspartat 99.2 9.6E-11 2.1E-15 108.1 12.0 107 34-161 66-180 (322)
127 PHA03412 putative methyltransf 99.2 1E-10 2.2E-15 102.5 11.2 105 52-159 50-160 (241)
128 TIGR00563 rsmB ribosomal RNA s 99.2 3.6E-10 7.9E-15 108.4 16.1 131 32-168 222-375 (426)
129 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.3E-10 4.9E-15 103.1 13.5 142 33-178 56-216 (264)
130 COG2813 RsmC 16S RNA G1207 met 99.2 2.2E-10 4.8E-15 103.3 13.1 114 37-162 147-267 (300)
131 PLN02232 ubiquinone biosynthes 99.2 9.7E-11 2.1E-15 97.6 9.9 74 77-162 1-82 (160)
132 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.6E-10 3.5E-15 117.2 13.0 127 52-183 539-675 (702)
133 KOG2904 Predicted methyltransf 99.2 5.3E-10 1.1E-14 98.8 14.2 139 34-174 131-300 (328)
134 PRK01581 speE spermidine synth 99.2 9.4E-10 2E-14 102.1 16.6 131 52-188 151-297 (374)
135 PRK03612 spermidine synthase; 99.2 1.9E-10 4.2E-15 112.9 12.6 124 52-181 298-437 (521)
136 KOG3191 Predicted N6-DNA-methy 99.2 2.2E-09 4.9E-14 89.5 16.6 131 52-188 44-193 (209)
137 KOG2899 Predicted methyltransf 99.1 7.7E-10 1.7E-14 96.1 13.1 105 51-160 58-208 (288)
138 TIGR00417 speE spermidine synt 99.1 1.2E-09 2.6E-14 98.7 14.4 124 52-183 73-209 (270)
139 PF05724 TPMT: Thiopurine S-me 99.1 2.4E-10 5.2E-15 100.0 9.5 109 39-159 28-153 (218)
140 KOG1975 mRNA cap methyltransfe 99.1 3.4E-10 7.3E-15 102.0 10.4 103 52-161 118-237 (389)
141 TIGR00479 rumA 23S rRNA (uraci 99.1 8.2E-10 1.8E-14 106.1 13.8 131 33-183 277-415 (431)
142 PF05219 DREV: DREV methyltran 99.1 1.6E-09 3.5E-14 95.6 13.9 130 52-197 95-249 (265)
143 PF05891 Methyltransf_PK: AdoM 99.1 3.2E-10 6.8E-15 97.8 8.3 138 36-183 37-196 (218)
144 PF02390 Methyltransf_4: Putat 99.1 9.6E-10 2.1E-14 94.6 10.9 119 54-179 20-149 (195)
145 PRK03522 rumB 23S rRNA methylu 99.1 6.1E-10 1.3E-14 102.8 10.3 116 33-165 158-278 (315)
146 PLN02366 spermidine synthase 99.1 6.5E-09 1.4E-13 95.5 16.1 122 52-181 92-227 (308)
147 KOG3045 Predicted RNA methylas 99.0 3.3E-09 7.2E-14 93.0 12.6 119 37-183 168-286 (325)
148 COG2519 GCD14 tRNA(1-methylade 99.0 5.3E-09 1.2E-13 92.0 13.9 123 38-183 84-215 (256)
149 PRK10909 rsmD 16S rRNA m(2)G96 99.0 2E-09 4.4E-14 92.8 10.7 115 35-163 39-161 (199)
150 PRK15128 23S rRNA m(5)C1962 me 99.0 4.6E-09 1E-13 99.7 13.2 129 52-182 221-363 (396)
151 COG2263 Predicted RNA methylas 99.0 1.1E-08 2.5E-13 86.1 13.9 112 52-183 46-163 (198)
152 PRK00274 ksgA 16S ribosomal RN 99.0 6.5E-09 1.4E-13 94.0 13.3 84 35-122 29-114 (272)
153 PF05148 Methyltransf_8: Hypot 99.0 6.8E-09 1.5E-13 89.0 11.7 121 37-183 60-180 (219)
154 COG1041 Predicted DNA modifica 99.0 8.9E-09 1.9E-13 94.6 13.2 146 34-192 183-335 (347)
155 PLN02781 Probable caffeoyl-CoA 99.0 1.4E-09 3E-14 96.2 7.7 95 52-160 69-177 (234)
156 PF00891 Methyltransf_2: O-met 99.0 1.3E-08 2.8E-13 90.2 13.5 105 38-160 90-198 (241)
157 TIGR02085 meth_trns_rumB 23S r 99.0 1.6E-08 3.5E-13 95.4 14.8 129 33-183 218-351 (374)
158 TIGR00478 tly hemolysin TlyA f 98.9 3.3E-08 7.2E-13 86.9 14.9 103 37-161 63-171 (228)
159 PRK14896 ksgA 16S ribosomal RN 98.9 8.8E-09 1.9E-13 92.4 10.5 85 34-124 15-102 (258)
160 PRK04148 hypothetical protein; 98.9 2.6E-08 5.6E-13 80.1 11.5 106 36-162 4-110 (134)
161 PF01739 CheR: CheR methyltran 98.9 1.3E-08 2.9E-13 87.5 10.5 100 52-161 32-175 (196)
162 TIGR00755 ksgA dimethyladenosi 98.9 3E-08 6.5E-13 88.7 12.6 84 35-124 16-105 (253)
163 COG0220 Predicted S-adenosylme 98.9 1.1E-08 2.5E-13 89.7 9.3 107 53-162 50-165 (227)
164 PF08704 GCD14: tRNA methyltra 98.9 3.1E-08 6.8E-13 88.0 12.0 129 34-183 26-166 (247)
165 PF06080 DUF938: Protein of un 98.8 5.4E-08 1.2E-12 83.6 12.7 129 54-191 28-195 (204)
166 PF03141 Methyltransf_29: Puta 98.8 7.2E-09 1.6E-13 98.8 6.8 135 35-182 100-247 (506)
167 PTZ00338 dimethyladenosine tra 98.8 2.1E-08 4.5E-13 91.6 9.6 86 34-125 22-113 (294)
168 PF01728 FtsJ: FtsJ-like methy 98.8 2.6E-08 5.5E-13 84.4 8.9 132 52-193 24-167 (181)
169 COG2521 Predicted archaeal met 98.8 2.7E-08 5.8E-13 86.2 8.8 124 52-183 135-272 (287)
170 PLN02823 spermine synthase 98.8 2.4E-07 5.1E-12 86.1 15.6 124 52-183 104-245 (336)
171 PRK11727 23S rRNA mA1618 methy 98.8 1.2E-07 2.6E-12 87.4 13.3 150 52-204 115-306 (321)
172 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.8 1.5E-07 3.3E-12 83.9 13.0 125 52-183 57-234 (256)
173 PF10294 Methyltransf_16: Puta 98.7 5.7E-08 1.2E-12 82.0 9.2 101 52-164 46-159 (173)
174 PLN02476 O-methyltransferase 98.7 4.6E-08 1E-12 88.3 9.1 95 52-160 119-227 (278)
175 PRK11933 yebU rRNA (cytosine-C 98.7 1.4E-07 3E-12 91.3 12.7 143 32-177 95-258 (470)
176 PF01596 Methyltransf_3: O-met 98.7 5.6E-08 1.2E-12 84.3 9.0 95 52-160 46-154 (205)
177 KOG1499 Protein arginine N-met 98.7 6.3E-08 1.4E-12 88.7 9.6 97 52-158 61-164 (346)
178 COG3963 Phospholipid N-methylt 98.7 2.2E-07 4.9E-12 76.7 11.7 117 35-163 35-158 (194)
179 COG4122 Predicted O-methyltran 98.7 4.9E-08 1.1E-12 85.0 8.2 95 52-160 60-165 (219)
180 PRK10611 chemotaxis methyltran 98.7 1.4E-07 3.1E-12 85.6 10.9 100 52-161 116-262 (287)
181 TIGR03439 methyl_EasF probable 98.7 1.6E-07 3.4E-12 86.6 11.2 144 4-161 25-197 (319)
182 PRK01544 bifunctional N5-gluta 98.7 1.8E-07 3.9E-12 91.6 11.9 147 29-180 321-479 (506)
183 KOG1331 Predicted methyltransf 98.7 3.5E-08 7.5E-13 88.0 5.9 101 52-164 46-146 (293)
184 COG1092 Predicted SAM-dependen 98.6 3.2E-07 6.9E-12 86.5 12.2 143 33-183 205-361 (393)
185 PF01170 UPF0020: Putative RNA 98.6 8.6E-08 1.9E-12 81.4 7.4 114 33-153 13-143 (179)
186 KOG3178 Hydroxyindole-O-methyl 98.6 3.7E-07 8.1E-12 83.7 11.7 96 52-160 178-274 (342)
187 COG0421 SpeE Spermidine syntha 98.6 1.2E-06 2.5E-11 79.5 14.1 144 52-205 77-235 (282)
188 COG1352 CheR Methylase of chem 98.6 1.3E-06 2.8E-11 78.5 13.6 100 52-161 97-241 (268)
189 KOG3420 Predicted RNA methylas 98.6 2.1E-07 4.5E-12 75.2 7.0 96 22-124 25-125 (185)
190 PRK05031 tRNA (uracil-5-)-meth 98.6 1.1E-06 2.3E-11 82.8 13.0 127 33-183 192-338 (362)
191 PF12147 Methyltransf_20: Puta 98.5 1.8E-06 3.9E-11 77.6 13.5 131 35-176 121-263 (311)
192 TIGR00095 RNA methyltransferas 98.5 4.4E-07 9.5E-12 77.7 9.3 99 52-162 50-160 (189)
193 PRK00536 speE spermidine synth 98.5 1.4E-06 3E-11 78.1 12.6 116 44-183 68-194 (262)
194 KOG0820 Ribosomal RNA adenine 98.5 5.2E-07 1.1E-11 80.0 9.6 84 35-124 45-134 (315)
195 PF06962 rRNA_methylase: Putat 98.5 7.4E-07 1.6E-11 72.2 9.5 104 75-180 1-114 (140)
196 PLN02589 caffeoyl-CoA O-methyl 98.5 4E-07 8.6E-12 81.1 8.3 95 52-160 80-189 (247)
197 PF07942 N2227: N2227-like pro 98.5 2.3E-06 5E-11 76.9 13.0 120 52-183 57-237 (270)
198 PRK04338 N(2),N(2)-dimethylgua 98.5 4.9E-07 1.1E-11 85.5 8.0 108 35-160 43-157 (382)
199 PF05185 PRMT5: PRMT5 arginine 98.5 1.2E-06 2.6E-11 84.5 10.7 138 10-158 140-294 (448)
200 COG0500 SmtA SAM-dependent met 98.5 2.6E-06 5.6E-11 66.8 11.0 96 55-163 52-157 (257)
201 COG2265 TrmA SAM-dependent met 98.4 1.9E-06 4E-11 82.7 11.8 142 31-193 276-428 (432)
202 PF03602 Cons_hypoth95: Conser 98.4 1.3E-07 2.9E-12 80.5 3.5 117 35-164 27-156 (183)
203 PF01564 Spermine_synth: Sperm 98.4 5.6E-06 1.2E-10 73.8 13.8 123 52-181 77-213 (246)
204 TIGR02143 trmA_only tRNA (urac 98.4 3.8E-06 8.2E-11 78.8 13.0 137 33-193 183-342 (353)
205 KOG1661 Protein-L-isoaspartate 98.4 1.3E-06 2.7E-11 74.9 8.6 109 36-165 68-197 (237)
206 COG0293 FtsJ 23S rRNA methylas 98.4 1.9E-05 4E-10 68.0 15.4 129 52-192 46-186 (205)
207 PRK00050 16S rRNA m(4)C1402 me 98.4 7.1E-07 1.5E-11 81.4 6.8 83 35-120 6-97 (296)
208 PF02384 N6_Mtase: N-6 DNA Met 98.4 2.4E-06 5.2E-11 78.5 10.1 152 35-191 33-215 (311)
209 PF10672 Methyltrans_SAM: S-ad 98.4 1.8E-06 3.9E-11 78.4 9.1 108 52-164 124-241 (286)
210 COG0030 KsgA Dimethyladenosine 98.4 2.7E-06 5.8E-11 75.9 10.0 82 35-120 17-102 (259)
211 COG1189 Predicted rRNA methyla 98.4 2.2E-05 4.7E-10 68.7 15.2 130 37-183 67-219 (245)
212 PF02527 GidB: rRNA small subu 98.3 9E-06 1.9E-10 69.3 12.1 113 54-183 51-170 (184)
213 PF02475 Met_10: Met-10+ like- 98.3 1.7E-06 3.7E-11 74.6 7.2 90 52-158 102-199 (200)
214 KOG1500 Protein arginine N-met 98.3 5.4E-06 1.2E-10 75.6 10.5 97 52-160 178-281 (517)
215 COG0144 Sun tRNA and rRNA cyto 98.3 5E-05 1.1E-09 71.3 17.2 145 32-179 140-306 (355)
216 COG2520 Predicted methyltransf 98.3 2.1E-05 4.6E-10 72.9 13.7 116 52-183 189-315 (341)
217 KOG3987 Uncharacterized conser 98.2 9.8E-07 2.1E-11 75.4 3.9 128 51-194 112-266 (288)
218 PF09243 Rsm22: Mitochondrial 98.2 2.1E-05 4.5E-10 71.3 12.5 118 52-182 34-162 (274)
219 KOG2352 Predicted spermine/spe 98.2 2.4E-05 5.1E-10 74.8 13.2 109 53-163 50-163 (482)
220 KOG2915 tRNA(1-methyladenosine 98.2 3.1E-05 6.7E-10 68.9 12.6 130 38-187 95-234 (314)
221 KOG1269 SAM-dependent methyltr 98.2 3.3E-06 7.2E-11 79.1 6.6 96 52-159 111-213 (364)
222 PRK11760 putative 23S rRNA C24 98.1 0.00015 3.3E-09 67.0 16.5 113 52-182 212-333 (357)
223 COG0742 N6-adenine-specific me 98.1 1.8E-05 3.9E-10 67.1 9.6 118 35-164 28-157 (187)
224 TIGR00308 TRM1 tRNA(guanine-26 98.1 6.7E-06 1.4E-10 77.6 7.3 94 52-160 45-146 (374)
225 PF05958 tRNA_U5-meth_tr: tRNA 98.1 4.5E-05 9.7E-10 71.6 12.7 68 32-103 181-253 (352)
226 PF00398 RrnaAD: Ribosomal RNA 98.1 7.2E-05 1.6E-09 67.3 13.6 83 34-120 16-104 (262)
227 COG0116 Predicted N6-adenine-s 98.1 4.3E-05 9.2E-10 71.5 12.1 123 31-162 174-345 (381)
228 COG0357 GidB Predicted S-adeno 98.1 8E-05 1.7E-09 64.8 12.5 141 33-189 47-196 (215)
229 KOG4589 Cell division protein 98.0 7.2E-05 1.6E-09 63.1 11.3 107 52-165 70-188 (232)
230 PRK11783 rlmL 23S rRNA m(2)G24 98.0 4.1E-05 8.9E-10 78.1 11.3 89 32-123 173-313 (702)
231 PF04816 DUF633: Family of unk 98.0 4.3E-05 9.3E-10 66.3 8.8 129 55-205 1-138 (205)
232 TIGR02987 met_A_Alw26 type II 97.9 7.1E-05 1.5E-09 73.8 11.3 73 52-124 32-123 (524)
233 PF08123 DOT1: Histone methyla 97.9 2.9E-05 6.3E-10 67.3 7.5 109 35-159 29-156 (205)
234 PF09445 Methyltransf_15: RNA 97.9 8.9E-06 1.9E-10 67.8 3.2 68 54-121 2-77 (163)
235 KOG1663 O-methyltransferase [S 97.9 0.00013 2.9E-09 63.4 10.4 95 52-160 74-182 (237)
236 PF04672 Methyltransf_19: S-ad 97.8 0.0003 6.6E-09 63.0 12.3 139 32-180 51-211 (267)
237 PF01269 Fibrillarin: Fibrilla 97.8 0.00063 1.4E-08 59.2 12.8 145 31-192 53-217 (229)
238 PLN02668 indole-3-acetate carb 97.7 0.00019 4E-09 67.8 9.8 57 108-164 157-240 (386)
239 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 2.2E-05 4.8E-10 71.5 3.4 142 32-176 69-234 (283)
240 PF11968 DUF3321: Putative met 97.7 0.00081 1.8E-08 58.3 12.5 112 52-183 52-176 (219)
241 COG4627 Uncharacterized protei 97.7 3E-05 6.5E-10 63.4 3.5 80 54-160 5-85 (185)
242 PF03141 Methyltransf_29: Puta 97.7 0.00024 5.2E-09 68.4 10.1 123 52-189 366-491 (506)
243 COG4262 Predicted spermidine s 97.7 0.00026 5.6E-09 65.5 9.3 144 52-205 290-450 (508)
244 KOG2187 tRNA uracil-5-methyltr 97.6 0.00052 1.1E-08 66.1 10.0 116 34-164 369-493 (534)
245 PF03492 Methyltransf_7: SAM d 97.5 0.00054 1.2E-08 63.8 9.7 111 52-163 17-185 (334)
246 KOG1099 SAM-dependent methyltr 97.5 0.00048 1.1E-08 59.9 8.4 136 53-198 43-196 (294)
247 KOG3201 Uncharacterized conser 97.5 7.3E-05 1.6E-09 61.6 3.1 126 52-189 30-167 (201)
248 COG4301 Uncharacterized conser 97.5 0.00097 2.1E-08 58.8 10.1 146 4-161 28-193 (321)
249 cd00315 Cyt_C5_DNA_methylase C 97.5 0.0028 6.1E-08 57.4 13.2 128 54-183 2-138 (275)
250 KOG1709 Guanidinoacetate methy 97.5 0.0019 4.2E-08 55.8 11.1 112 33-159 87-204 (271)
251 COG3897 Predicted methyltransf 97.4 0.00046 1E-08 58.7 7.2 98 52-165 80-182 (218)
252 PF11599 AviRa: RRNA methyltra 97.4 0.00031 6.6E-09 60.6 5.8 127 30-161 33-214 (246)
253 PF13679 Methyltransf_32: Meth 97.4 0.00063 1.4E-08 55.3 7.0 43 52-94 26-74 (141)
254 COG4076 Predicted RNA methylas 97.4 0.00055 1.2E-08 57.9 6.6 95 53-159 34-133 (252)
255 PRK10742 putative methyltransf 97.3 0.00059 1.3E-08 60.5 6.5 85 38-125 76-176 (250)
256 COG2384 Predicted SAM-dependen 97.3 0.0058 1.3E-07 53.1 12.3 135 52-206 17-158 (226)
257 KOG2798 Putative trehalase [Ca 97.1 0.0033 7.2E-08 57.2 8.9 121 52-183 151-332 (369)
258 PF05971 Methyltransf_10: Prot 97.1 0.0036 7.9E-08 57.1 9.2 91 35-125 84-189 (299)
259 KOG1122 tRNA and rRNA cytosine 97.0 0.0066 1.4E-07 57.3 10.9 126 52-179 242-389 (460)
260 KOG2793 Putative N2,N2-dimethy 97.0 0.012 2.6E-07 52.3 12.1 120 52-183 87-220 (248)
261 PF01555 N6_N4_Mtase: DNA meth 97.0 0.0022 4.8E-08 55.3 7.1 55 33-91 177-231 (231)
262 KOG3115 Methyltransferase-like 96.9 0.0029 6.3E-08 54.2 6.9 107 52-161 61-183 (249)
263 COG1889 NOP1 Fibrillarin-like 96.9 0.075 1.6E-06 45.8 15.2 150 33-202 58-226 (231)
264 COG0270 Dcm Site-specific DNA 96.9 0.012 2.6E-07 54.7 11.4 130 52-182 3-141 (328)
265 PF13578 Methyltransf_24: Meth 96.9 0.00018 3.8E-09 55.2 -0.7 94 56-161 1-105 (106)
266 TIGR01444 fkbM_fam methyltrans 96.9 0.0015 3.3E-08 52.5 4.9 51 54-104 1-58 (143)
267 PRK11524 putative methyltransf 96.9 0.0028 6.2E-08 57.6 7.1 58 34-95 195-252 (284)
268 TIGR00006 S-adenosyl-methyltra 96.9 0.0036 7.8E-08 57.4 7.7 83 35-120 7-99 (305)
269 COG4798 Predicted methyltransf 96.9 0.007 1.5E-07 51.7 8.6 134 41-183 41-200 (238)
270 PF07757 AdoMet_MTase: Predict 96.9 0.0016 3.4E-08 50.2 4.3 31 52-82 59-89 (112)
271 PF03059 NAS: Nicotianamine sy 96.8 0.016 3.5E-07 52.4 11.1 99 52-161 121-230 (276)
272 COG1064 AdhP Zn-dependent alco 96.7 0.011 2.4E-07 54.9 9.6 101 41-163 159-261 (339)
273 PF04445 SAM_MT: Putative SAM- 96.7 0.0031 6.7E-08 55.6 5.6 87 38-125 63-163 (234)
274 TIGR00675 dcm DNA-methyltransf 96.7 0.021 4.6E-07 52.7 11.4 127 55-183 1-135 (315)
275 PF06859 Bin3: Bicoid-interact 96.7 0.0014 3E-08 50.7 2.7 44 113-161 1-44 (110)
276 COG0286 HsdM Type I restrictio 96.6 0.025 5.4E-07 55.5 11.6 124 35-161 173-326 (489)
277 KOG2730 Methylase [General fun 96.6 0.0042 9.2E-08 53.9 5.4 69 52-120 95-172 (263)
278 PF07091 FmrO: Ribosomal RNA m 96.5 0.014 3E-07 51.8 8.3 74 52-127 106-185 (251)
279 PF01861 DUF43: Protein of unk 96.5 0.25 5.5E-06 43.7 15.9 120 52-183 45-173 (243)
280 KOG2198 tRNA cytosine-5-methyl 96.3 0.042 9.1E-07 51.3 10.8 129 45-180 152-316 (375)
281 PRK13699 putative methylase; P 96.3 0.014 3E-07 51.5 7.3 57 35-95 151-207 (227)
282 PRK01747 mnmC bifunctional tRN 96.3 0.065 1.4E-06 54.5 12.9 118 52-183 58-222 (662)
283 KOG2671 Putative RNA methylase 96.3 0.011 2.4E-07 54.5 6.5 124 35-162 195-355 (421)
284 PF00145 DNA_methylase: C-5 cy 96.0 0.036 7.7E-07 50.6 8.9 126 54-183 2-137 (335)
285 COG5459 Predicted rRNA methyla 95.7 0.077 1.7E-06 49.3 9.4 103 52-162 114-226 (484)
286 PF04989 CmcI: Cephalosporin h 95.7 0.057 1.2E-06 46.7 8.1 96 52-159 33-145 (206)
287 KOG1596 Fibrillarin and relate 95.6 0.1 2.2E-06 46.1 9.2 117 29-162 134-262 (317)
288 PF01795 Methyltransf_5: MraW 95.2 0.05 1.1E-06 50.0 6.4 83 35-120 7-100 (310)
289 PHA01634 hypothetical protein 95.2 0.11 2.3E-06 41.6 7.2 68 52-119 29-98 (156)
290 PRK09424 pntA NAD(P) transhydr 95.2 0.19 4.2E-06 49.4 10.7 96 52-160 165-284 (509)
291 KOG0024 Sorbitol dehydrogenase 95.0 0.28 6.1E-06 45.2 10.4 121 39-181 160-293 (354)
292 COG0275 Predicted S-adenosylme 94.9 0.12 2.5E-06 47.2 7.7 58 34-94 9-69 (314)
293 PRK09880 L-idonate 5-dehydroge 94.8 0.31 6.7E-06 45.1 10.7 90 52-160 170-265 (343)
294 KOG1562 Spermidine synthase [A 94.8 0.052 1.1E-06 49.3 5.1 101 52-161 122-236 (337)
295 KOG2920 Predicted methyltransf 94.8 0.033 7.1E-07 50.2 3.8 36 52-87 117-153 (282)
296 KOG2539 Mitochondrial/chloropl 94.6 0.063 1.4E-06 51.6 5.5 103 52-161 201-315 (491)
297 PF10354 DUF2431: Domain of un 94.5 0.2 4.3E-06 41.9 7.8 79 109-189 71-153 (166)
298 KOG1098 Putative SAM-dependent 94.5 0.073 1.6E-06 52.7 5.7 139 9-165 10-162 (780)
299 PRK13699 putative methylase; P 94.4 0.083 1.8E-06 46.5 5.6 84 97-183 3-91 (227)
300 PF02005 TRM: N2,N2-dimethylgu 94.4 0.12 2.6E-06 49.0 7.0 94 52-160 50-153 (377)
301 COG1867 TRM1 N2,N2-dimethylgua 94.4 0.12 2.7E-06 48.3 6.8 94 52-160 53-153 (380)
302 KOG4058 Uncharacterized conser 94.4 0.43 9.3E-06 39.2 9.1 115 36-170 60-181 (199)
303 PRK10458 DNA cytosine methylas 94.3 0.98 2.1E-05 44.1 13.2 130 52-183 88-254 (467)
304 cd08283 FDH_like_1 Glutathione 94.2 0.4 8.6E-06 45.3 10.0 101 52-160 185-305 (386)
305 COG3129 Predicted SAM-dependen 94.1 0.099 2.2E-06 45.9 5.1 92 33-124 57-164 (292)
306 PF03269 DUF268: Caenorhabditi 94.0 0.036 7.8E-07 45.9 2.2 107 52-161 2-111 (177)
307 COG1565 Uncharacterized conser 93.8 1.5 3.2E-05 41.1 12.7 53 39-94 68-130 (370)
308 TIGR00027 mthyl_TIGR00027 meth 93.7 1 2.3E-05 40.4 11.2 118 33-163 66-199 (260)
309 cd08254 hydroxyacyl_CoA_DH 6-h 93.6 1 2.2E-05 41.0 11.4 90 52-160 166-262 (338)
310 COG1063 Tdh Threonine dehydrog 93.4 0.23 5E-06 46.5 6.8 92 52-160 169-268 (350)
311 PRK11524 putative methyltransf 93.0 0.16 3.5E-06 46.2 5.0 84 96-183 9-98 (284)
312 KOG0822 Protein kinase inhibit 92.8 0.38 8.3E-06 47.0 7.3 134 18-161 330-478 (649)
313 cd08237 ribitol-5-phosphate_DH 92.5 0.8 1.7E-05 42.4 9.1 88 52-160 164-255 (341)
314 TIGR02822 adh_fam_2 zinc-bindi 92.5 2 4.2E-05 39.6 11.6 86 52-160 166-253 (329)
315 COG1255 Uncharacterized protei 92.2 1.1 2.4E-05 35.1 7.8 65 52-122 14-79 (129)
316 PF03721 UDPG_MGDP_dh_N: UDP-g 92.2 1 2.3E-05 38.2 8.6 116 54-180 2-139 (185)
317 PF05711 TylF: Macrocin-O-meth 91.7 2.1 4.5E-05 38.3 10.2 118 52-183 75-233 (248)
318 KOG1501 Arginine N-methyltrans 91.6 0.23 5.1E-06 47.5 4.2 40 53-92 68-108 (636)
319 TIGR03366 HpnZ_proposed putati 91.2 1.7 3.6E-05 39.0 9.4 91 52-160 121-217 (280)
320 cd08230 glucose_DH Glucose deh 91.0 2.3 5.1E-05 39.4 10.4 89 52-160 173-268 (355)
321 PF02636 Methyltransf_28: Puta 90.9 1.2 2.6E-05 39.6 8.0 44 52-95 19-72 (252)
322 cd05188 MDR Medium chain reduc 90.7 2.5 5.4E-05 36.7 9.8 91 52-160 135-231 (271)
323 PF02254 TrkA_N: TrkA-N domain 90.6 3.1 6.7E-05 31.8 9.2 101 60-182 4-111 (116)
324 PF11899 DUF3419: Protein of u 89.9 0.57 1.2E-05 44.5 5.2 67 88-163 269-336 (380)
325 PF03686 UPF0146: Uncharacteri 89.9 0.44 9.6E-06 37.9 3.8 89 52-162 14-103 (127)
326 PF00107 ADH_zinc_N: Zinc-bind 89.8 1.3 2.9E-05 34.4 6.7 83 61-161 1-89 (130)
327 KOG2651 rRNA adenine N-6-methy 89.8 1.1 2.3E-05 42.3 6.8 40 52-91 154-194 (476)
328 COG3510 CmcI Cephalosporin hyd 89.8 1.1 2.4E-05 38.4 6.3 98 52-160 70-179 (237)
329 PF11312 DUF3115: Protein of u 89.8 2.1 4.6E-05 39.3 8.6 108 53-166 88-247 (315)
330 cd08281 liver_ADH_like1 Zinc-d 89.7 1.6 3.5E-05 40.8 8.2 91 52-160 192-289 (371)
331 cd08239 THR_DH_like L-threonin 89.4 2 4.3E-05 39.4 8.5 99 41-160 156-261 (339)
332 TIGR01202 bchC 2-desacetyl-2-h 89.2 2.5 5.4E-05 38.5 8.9 83 52-160 145-230 (308)
333 TIGR00936 ahcY adenosylhomocys 89.2 12 0.00026 35.9 13.7 102 52-178 195-299 (406)
334 TIGR00561 pntA NAD(P) transhyd 89.0 1.5 3.4E-05 43.2 7.7 94 52-158 164-281 (511)
335 cd08232 idonate-5-DH L-idonate 88.9 6.5 0.00014 35.8 11.5 91 52-160 166-261 (339)
336 cd08245 CAD Cinnamyl alcohol d 88.5 7.3 0.00016 35.3 11.5 90 52-160 163-255 (330)
337 cd00401 AdoHcyase S-adenosyl-L 88.4 4.7 0.0001 38.7 10.4 98 37-161 189-289 (413)
338 PLN02586 probable cinnamyl alc 88.0 4.3 9.4E-05 37.9 9.8 91 52-160 184-277 (360)
339 TIGR03451 mycoS_dep_FDH mycoth 87.5 8.7 0.00019 35.6 11.6 91 52-160 177-275 (358)
340 COG0863 DNA modification methy 87.1 2.1 4.6E-05 38.5 7.0 58 34-95 209-266 (302)
341 PLN02740 Alcohol dehydrogenase 87.0 5.1 0.00011 37.6 9.7 91 52-160 199-299 (381)
342 COG1004 Ugd Predicted UDP-gluc 86.9 6.2 0.00013 37.6 9.9 40 54-93 2-43 (414)
343 TIGR03201 dearomat_had 6-hydro 86.7 12 0.00025 34.6 11.9 42 52-93 167-210 (349)
344 PLN03154 putative allyl alcoho 86.2 12 0.00026 34.7 11.6 91 52-160 159-257 (348)
345 PF05430 Methyltransf_30: S-ad 86.0 0.21 4.5E-06 39.8 -0.3 81 96-190 33-113 (124)
346 TIGR00872 gnd_rel 6-phosphoglu 85.9 5.1 0.00011 36.5 8.8 117 54-192 2-120 (298)
347 cd08255 2-desacetyl-2-hydroxye 85.9 11 0.00025 33.1 10.9 89 52-160 98-189 (277)
348 PRK07417 arogenate dehydrogena 85.8 7.5 0.00016 35.0 9.8 87 54-161 2-90 (279)
349 PF06016 Reovirus_L2: Reovirus 85.7 1.3 2.9E-05 47.5 5.3 102 52-160 823-926 (1289)
350 COG0569 TrkA K+ transport syst 85.4 3.5 7.5E-05 36.1 7.1 67 54-120 2-73 (225)
351 PRK09599 6-phosphogluconate de 85.2 11 0.00024 34.3 10.7 120 54-194 2-123 (301)
352 PF03514 GRAS: GRAS domain fam 85.1 4.1 8.9E-05 38.6 8.0 119 36-161 98-244 (374)
353 TIGR01692 HIBADH 3-hydroxyisob 85.0 9.2 0.0002 34.6 10.0 118 65-206 11-134 (288)
354 PLN02514 cinnamyl-alcohol dehy 84.9 9.9 0.00021 35.3 10.5 92 52-160 181-274 (357)
355 PRK08267 short chain dehydroge 84.7 9.6 0.00021 33.3 9.8 70 54-123 3-87 (260)
356 PRK06522 2-dehydropantoate 2-r 84.7 11 0.00024 33.9 10.5 93 54-161 2-100 (304)
357 KOG2352 Predicted spermine/spe 84.6 4.1 8.9E-05 39.6 7.7 122 52-178 296-433 (482)
358 PRK05708 2-dehydropantoate 2-r 84.6 13 0.00028 34.0 10.8 96 52-161 2-104 (305)
359 PRK05786 fabG 3-ketoacyl-(acyl 83.8 9.7 0.00021 32.6 9.3 109 52-160 5-134 (238)
360 cd08242 MDR_like Medium chain 83.4 17 0.00037 32.7 11.2 84 52-159 156-243 (319)
361 PLN02827 Alcohol dehydrogenase 83.3 10 0.00022 35.7 9.8 91 52-160 194-294 (378)
362 cd08234 threonine_DH_like L-th 83.0 15 0.00033 33.2 10.8 90 52-160 160-256 (334)
363 TIGR02818 adh_III_F_hyde S-(hy 82.8 13 0.00029 34.6 10.4 91 52-160 186-286 (368)
364 COG0677 WecC UDP-N-acetyl-D-ma 82.6 7.9 0.00017 36.9 8.5 110 52-169 9-138 (436)
365 PRK08265 short chain dehydroge 82.5 8.3 0.00018 33.9 8.5 72 52-123 6-90 (261)
366 PRK09496 trkA potassium transp 82.5 9.2 0.0002 36.7 9.4 69 52-120 231-304 (453)
367 PRK12829 short chain dehydroge 82.3 4.9 0.00011 35.1 6.9 72 52-123 11-96 (264)
368 KOG1227 Putative methyltransfe 82.1 1.1 2.3E-05 41.1 2.5 95 43-156 188-290 (351)
369 PRK09260 3-hydroxybutyryl-CoA 81.9 12 0.00026 33.8 9.5 39 54-92 3-43 (288)
370 PRK09072 short chain dehydroge 81.8 14 0.0003 32.4 9.7 73 52-124 5-91 (263)
371 cd05285 sorbitol_DH Sorbitol d 81.7 27 0.00058 31.9 11.9 98 42-160 156-264 (343)
372 TIGR02825 B4_12hDH leukotriene 81.5 20 0.00044 32.4 10.9 90 52-160 139-236 (325)
373 cd08300 alcohol_DH_class_III c 81.4 16 0.00034 34.0 10.3 91 52-160 187-287 (368)
374 PF11899 DUF3419: Protein of u 81.3 4.1 8.9E-05 38.7 6.3 49 40-91 27-75 (380)
375 PRK05872 short chain dehydroge 81.2 16 0.00036 32.8 10.1 72 52-123 9-95 (296)
376 PF04072 LCM: Leucine carboxyl 81.1 19 0.00042 30.1 9.9 75 52-127 79-171 (183)
377 COG1748 LYS9 Saccharopine dehy 80.9 14 0.00031 35.2 9.7 68 53-120 2-75 (389)
378 PRK06701 short chain dehydroge 80.8 9.3 0.0002 34.4 8.3 109 52-160 46-180 (290)
379 COG3315 O-Methyltransferase in 80.8 12 0.00027 34.2 9.1 100 53-162 94-210 (297)
380 PRK15057 UDP-glucose 6-dehydro 80.7 15 0.00034 34.9 10.0 39 54-92 2-41 (388)
381 PLN02494 adenosylhomocysteinas 80.5 13 0.00029 36.3 9.5 113 37-175 241-355 (477)
382 PRK10083 putative oxidoreducta 80.5 12 0.00025 34.1 9.0 91 52-160 161-258 (339)
383 PRK10309 galactitol-1-phosphat 80.3 16 0.00035 33.5 10.0 91 52-160 161-259 (347)
384 PRK07063 short chain dehydroge 80.2 14 0.0003 32.3 9.1 72 52-123 7-96 (260)
385 cd08261 Zn_ADH7 Alcohol dehydr 79.8 13 0.00027 33.9 9.0 97 42-159 153-256 (337)
386 KOG3924 Putative protein methy 79.6 4.3 9.4E-05 38.5 5.7 116 29-159 173-306 (419)
387 PTZ00357 methyltransferase; Pr 79.2 10 0.00023 38.7 8.4 67 53-119 702-798 (1072)
388 PF02153 PDH: Prephenate dehyd 79.2 9.4 0.0002 34.0 7.7 86 66-172 2-89 (258)
389 KOG1253 tRNA methyltransferase 79.1 0.77 1.7E-05 44.6 0.7 94 52-160 110-215 (525)
390 PRK12921 2-dehydropantoate 2-r 79.1 13 0.00028 33.5 8.7 92 54-160 2-101 (305)
391 COG1568 Predicted methyltransf 78.8 17 0.00036 33.2 8.8 119 51-182 152-282 (354)
392 TIGR00497 hsdM type I restrict 78.7 70 0.0015 31.5 15.8 125 35-160 202-354 (501)
393 PRK11559 garR tartronate semia 78.6 18 0.00039 32.6 9.5 115 54-192 4-123 (296)
394 PRK06035 3-hydroxyacyl-CoA deh 78.6 13 0.00028 33.6 8.5 38 54-91 5-44 (291)
395 cd08301 alcohol_DH_plants Plan 78.4 23 0.00049 32.9 10.3 91 52-160 188-288 (369)
396 PF05206 TRM13: Methyltransfer 78.3 4.7 0.0001 36.2 5.4 32 52-83 19-57 (259)
397 cd08298 CAD2 Cinnamyl alcohol 78.2 37 0.0008 30.6 11.5 83 52-159 168-254 (329)
398 PRK11064 wecC UDP-N-acetyl-D-m 78.0 38 0.00083 32.5 11.9 38 53-90 4-43 (415)
399 TIGR00873 gnd 6-phosphoglucona 78.0 20 0.00043 35.1 10.0 119 58-194 5-127 (467)
400 cd08277 liver_alcohol_DH_like 77.9 14 0.0003 34.4 8.7 91 52-160 185-285 (365)
401 cd08293 PTGR2 Prostaglandin re 77.9 31 0.00068 31.4 11.0 89 53-159 156-252 (345)
402 PRK07067 sorbitol dehydrogenas 77.9 23 0.0005 30.8 9.7 72 52-123 6-90 (257)
403 PRK08324 short chain dehydroge 77.8 12 0.00027 38.2 9.0 72 52-123 422-508 (681)
404 cd08238 sorbose_phosphate_red 77.8 36 0.00078 32.3 11.7 92 52-160 176-287 (410)
405 PRK07806 short chain dehydroge 77.8 20 0.00044 30.9 9.3 109 52-160 6-133 (248)
406 PRK05854 short chain dehydroge 77.5 28 0.0006 31.7 10.4 73 52-124 14-104 (313)
407 cd08231 MDR_TM0436_like Hypoth 77.3 53 0.0012 30.2 12.5 91 52-160 178-279 (361)
408 PF03446 NAD_binding_2: NAD bi 77.3 9.6 0.00021 31.3 6.7 115 54-192 3-121 (163)
409 PRK06196 oxidoreductase; Provi 77.3 6.7 0.00015 35.7 6.3 72 52-123 26-109 (315)
410 COG0287 TyrA Prephenate dehydr 77.1 15 0.00033 33.3 8.4 89 52-158 3-95 (279)
411 PRK07533 enoyl-(acyl carrier p 77.0 29 0.00062 30.4 10.1 72 52-123 10-98 (258)
412 PTZ00142 6-phosphogluconate de 76.9 30 0.00065 33.9 10.9 123 54-194 3-130 (470)
413 PRK07326 short chain dehydroge 76.9 23 0.00049 30.2 9.3 70 52-122 6-91 (237)
414 PRK15461 NADH-dependent gamma- 76.9 18 0.0004 32.8 9.0 117 54-194 3-124 (296)
415 cd08285 NADP_ADH NADP(H)-depen 76.8 48 0.001 30.3 12.0 90 52-159 167-264 (351)
416 PRK07576 short chain dehydroge 76.5 23 0.00051 31.1 9.5 70 52-122 9-95 (264)
417 PRK07502 cyclohexadienyl dehyd 76.4 20 0.00043 32.7 9.1 87 53-158 7-97 (307)
418 PRK12939 short chain dehydroge 76.3 25 0.00053 30.2 9.4 71 52-123 7-94 (250)
419 cd08233 butanediol_DH_like (2R 75.9 19 0.00041 33.0 9.0 90 52-160 173-271 (351)
420 cd08295 double_bond_reductase_ 75.8 43 0.00092 30.5 11.3 91 52-160 152-250 (338)
421 KOG0023 Alcohol dehydrogenase, 75.4 9.9 0.00021 35.3 6.6 95 52-165 182-283 (360)
422 cd08294 leukotriene_B4_DH_like 74.6 44 0.00096 30.0 11.0 90 52-160 144-240 (329)
423 KOG2078 tRNA modification enzy 74.5 2.6 5.7E-05 40.4 2.8 43 52-94 250-292 (495)
424 PF02086 MethyltransfD12: D12 74.4 4 8.7E-05 35.9 3.9 53 35-90 7-59 (260)
425 TIGR02819 fdhA_non_GSH formald 74.3 50 0.0011 31.3 11.6 101 52-160 186-298 (393)
426 PRK00094 gpsA NAD(P)H-dependen 73.7 25 0.00054 32.0 9.1 88 54-159 3-103 (325)
427 PRK08589 short chain dehydroge 73.6 28 0.0006 30.8 9.2 71 52-123 6-92 (272)
428 PRK06500 short chain dehydroge 73.5 35 0.00076 29.3 9.7 72 52-123 6-90 (249)
429 PRK06953 short chain dehydroge 73.4 22 0.00049 30.2 8.3 68 54-123 3-80 (222)
430 PRK07109 short chain dehydroge 73.3 24 0.00053 32.5 9.0 72 52-123 8-95 (334)
431 cd05278 FDH_like Formaldehyde 73.1 43 0.00093 30.4 10.6 91 52-160 168-266 (347)
432 PLN02178 cinnamyl-alcohol dehy 73.1 18 0.00038 34.1 8.1 90 52-160 179-272 (375)
433 cd08296 CAD_like Cinnamyl alco 73.0 24 0.00052 32.1 8.9 90 52-160 164-258 (333)
434 PRK12742 oxidoreductase; Provi 72.7 39 0.00084 28.8 9.7 72 52-124 6-86 (237)
435 COG0604 Qor NADPH:quinone redu 72.7 18 0.00039 33.5 8.0 99 43-162 137-242 (326)
436 PRK05693 short chain dehydroge 72.5 31 0.00066 30.4 9.2 68 54-123 3-82 (274)
437 COG2933 Predicted SAM-dependen 72.0 19 0.00041 32.6 7.3 84 35-123 191-280 (358)
438 cd05283 CAD1 Cinnamyl alcohol 72.0 43 0.00094 30.5 10.3 91 52-160 170-262 (337)
439 PRK08643 acetoin reductase; Va 71.7 49 0.0011 28.6 10.2 71 53-123 3-89 (256)
440 PRK12490 6-phosphogluconate de 71.5 59 0.0013 29.5 11.0 118 55-193 3-122 (299)
441 PRK03659 glutathione-regulated 71.4 36 0.00078 34.4 10.3 93 53-161 401-498 (601)
442 PRK05867 short chain dehydroge 71.2 11 0.00025 32.7 6.0 73 52-124 9-97 (253)
443 PRK07890 short chain dehydroge 71.2 15 0.00032 31.9 6.8 72 52-123 5-92 (258)
444 cd08236 sugar_DH NAD(P)-depend 70.8 70 0.0015 29.0 11.5 91 52-160 160-257 (343)
445 COG0771 MurD UDP-N-acetylmuram 70.3 38 0.00082 33.0 9.7 119 52-182 7-138 (448)
446 PRK06179 short chain dehydroge 70.0 32 0.0007 30.1 8.7 68 52-124 4-84 (270)
447 COG0240 GpsA Glycerol-3-phosph 69.9 84 0.0018 29.3 11.4 94 54-162 3-106 (329)
448 PRK08293 3-hydroxybutyryl-CoA 69.9 22 0.00047 32.1 7.7 40 53-92 4-45 (287)
449 PRK05225 ketol-acid reductoiso 69.5 4.8 0.0001 39.1 3.4 87 52-160 36-130 (487)
450 PRK07677 short chain dehydroge 69.5 11 0.00024 32.7 5.6 71 53-123 2-88 (252)
451 PLN02350 phosphogluconate dehy 69.4 38 0.00082 33.4 9.7 122 54-193 8-135 (493)
452 PRK05808 3-hydroxybutyryl-CoA 69.3 30 0.00064 31.1 8.4 91 54-161 5-118 (282)
453 COG5379 BtaA S-adenosylmethion 69.0 9.8 0.00021 34.9 5.0 74 79-161 292-366 (414)
454 PRK06249 2-dehydropantoate 2-r 68.7 29 0.00063 31.7 8.4 92 52-160 5-105 (313)
455 PF02737 3HCDH_N: 3-hydroxyacy 68.5 10 0.00023 31.8 4.9 92 55-163 2-116 (180)
456 COG1893 ApbA Ketopantoate redu 68.1 31 0.00068 31.7 8.4 92 53-161 1-101 (307)
457 PLN02256 arogenate dehydrogena 68.1 39 0.00085 31.0 9.0 90 52-163 36-128 (304)
458 PRK08220 2,3-dihydroxybenzoate 67.9 44 0.00095 28.7 9.0 67 52-123 8-86 (252)
459 PRK06128 oxidoreductase; Provi 67.8 59 0.0013 29.2 10.1 109 52-160 55-190 (300)
460 PLN02702 L-idonate 5-dehydroge 67.8 57 0.0012 30.1 10.3 91 52-159 182-283 (364)
461 PF10237 N6-adenineMlase: Prob 67.6 71 0.0015 26.5 13.9 95 52-162 26-124 (162)
462 PRK06172 short chain dehydroge 67.4 14 0.0003 32.1 5.8 72 52-123 7-94 (253)
463 PF01210 NAD_Gly3P_dh_N: NAD-d 67.4 32 0.0007 28.0 7.6 88 55-160 2-102 (157)
464 cd08278 benzyl_alcohol_DH Benz 67.4 39 0.00085 31.3 9.1 91 52-160 187-284 (365)
465 KOG2912 Predicted DNA methylas 67.3 12 0.00026 34.7 5.3 66 56-123 107-188 (419)
466 PRK06197 short chain dehydroge 67.3 39 0.00084 30.4 8.8 73 52-124 16-106 (306)
467 cd05564 PTS_IIB_chitobiose_lic 67.1 18 0.00039 27.1 5.5 74 58-161 4-77 (96)
468 PRK06079 enoyl-(acyl carrier p 66.7 70 0.0015 27.8 10.2 73 52-124 7-94 (252)
469 PRK08507 prephenate dehydrogen 66.6 43 0.00094 29.9 8.9 85 54-161 2-90 (275)
470 PRK12826 3-ketoacyl-(acyl-carr 66.5 25 0.00055 30.1 7.2 71 52-123 6-93 (251)
471 PRK10669 putative cation:proto 66.4 61 0.0013 32.2 10.7 65 53-119 418-487 (558)
472 PRK06398 aldose dehydrogenase; 66.3 28 0.00062 30.4 7.6 65 52-123 6-82 (258)
473 PRK07530 3-hydroxybutyryl-CoA 66.3 72 0.0016 28.7 10.4 92 53-161 5-119 (292)
474 PRK05476 S-adenosyl-L-homocyst 65.9 26 0.00056 33.9 7.6 97 52-173 212-311 (425)
475 COG4017 Uncharacterized protei 65.9 23 0.00051 30.5 6.4 93 20-123 12-109 (254)
476 PRK06181 short chain dehydroge 65.9 38 0.00083 29.4 8.3 69 54-123 3-88 (263)
477 TIGR00518 alaDH alanine dehydr 65.8 11 0.00025 35.5 5.1 42 52-93 167-210 (370)
478 PRK07097 gluconate 5-dehydroge 65.7 21 0.00045 31.3 6.6 72 52-123 10-97 (265)
479 PRK06484 short chain dehydroge 65.1 38 0.00082 33.0 8.9 72 52-123 269-353 (520)
480 TIGR01832 kduD 2-deoxy-D-gluco 65.0 28 0.00061 29.9 7.2 72 52-123 5-90 (248)
481 cd01065 NAD_bind_Shikimate_DH 64.9 48 0.001 26.3 8.2 69 52-124 19-92 (155)
482 KOG0022 Alcohol dehydrogenase, 64.8 17 0.00036 33.8 5.7 42 52-93 193-237 (375)
483 PRK12937 short chain dehydroge 64.8 88 0.0019 26.6 10.5 72 52-123 5-93 (245)
484 PRK08655 prephenate dehydrogen 64.4 62 0.0013 31.3 10.0 99 54-174 2-104 (437)
485 PRK08217 fabG 3-ketoacyl-(acyl 64.2 23 0.0005 30.4 6.5 72 52-123 5-92 (253)
486 PRK08177 short chain dehydroge 64.0 90 0.0019 26.4 10.3 69 54-123 3-81 (225)
487 PRK09422 ethanol-active dehydr 64.0 49 0.0011 29.9 8.9 97 42-160 156-260 (338)
488 PRK06130 3-hydroxybutyryl-CoA 63.9 50 0.0011 30.0 8.9 39 53-91 5-45 (311)
489 PF14314 Methyltrans_Mon: Viru 63.8 1.1E+02 0.0023 31.5 11.7 157 37-206 312-501 (675)
490 PF05050 Methyltransf_21: Meth 63.4 15 0.00032 29.4 4.8 36 57-92 1-42 (167)
491 TIGR01505 tartro_sem_red 2-hyd 63.3 52 0.0011 29.6 8.8 114 55-192 2-120 (291)
492 PRK12744 short chain dehydroge 63.3 73 0.0016 27.6 9.6 72 52-123 8-99 (257)
493 cd08270 MDR4 Medium chain dehy 63.2 1.1E+02 0.0023 27.0 11.6 86 52-160 133-221 (305)
494 PRK07062 short chain dehydroge 63.2 20 0.00043 31.3 6.0 72 52-123 8-97 (265)
495 PLN02819 lysine-ketoglutarate 63.1 46 0.00099 36.0 9.4 70 52-121 569-656 (1042)
496 PRK06101 short chain dehydroge 63.0 33 0.00072 29.5 7.3 51 54-105 3-57 (240)
497 PLN02545 3-hydroxybutyryl-CoA 63.0 87 0.0019 28.2 10.3 39 53-91 5-45 (295)
498 PRK10538 malonic semialdehyde 62.6 23 0.0005 30.7 6.2 70 54-123 2-84 (248)
499 KOG0821 Predicted ribosomal RN 62.6 13 0.00028 32.8 4.3 48 35-85 37-85 (326)
500 PRK14620 NAD(P)H-dependent gly 62.5 65 0.0014 29.5 9.5 92 54-159 2-104 (326)
No 1
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=100.00 E-value=1.9e-75 Score=493.42 Aligned_cols=270 Identities=59% Similarity=0.982 Sum_probs=245.3
Q ss_pred CCCCCCCCCCCcccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEe
Q 043626 1 MANRPELIAPPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLD 80 (291)
Q Consensus 1 m~~~pe~~~ppe~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvD 80 (291)
|..||||.+|||+||||.+|.+|++++++..||.+|+++++++|+++.+ .+..|||||||||.++..|.+.||.|+|+|
T Consensus 1 m~~rPEh~~PpelfYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~-~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvD 79 (270)
T KOG1541|consen 1 MSVRPEHGAPPELFYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGP-KSGLILDIGCGSGLSGSVLSDSGHQWIGVD 79 (270)
T ss_pred CCcCccccCCcceeechhhhhhccccceeeeehHHHHHHHHHHhhCCCC-CCcEEEEeccCCCcchheeccCCceEEeec
Confidence 5559999999999999999999999999999999999999999999986 578999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 81 ISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 81 is~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
||++||++|.++..+++++++||++++||++++||+|||++++||+||++++.|+|.+++..||..||.+|++|+++++|
T Consensus 80 iSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 80 ISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEeeCCCCCCCCCCCCccCCCCCCCCCCCCCcccccceee
Q 043626 161 IYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCI 240 (291)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (291)
+||++..|.++|.+.++++||.+|++||||++.+.+++||+|++|.. +|..++.+.+. . ++ .+.
T Consensus 160 fYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL~~g~~-----~~~~l~~~~~~--~-----~e----~n~ 223 (270)
T KOG1541|consen 160 FYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVLMTGGV-----VPRALTAGGET--K-----DE----DNA 223 (270)
T ss_pred ecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEEecCCc-----ccccccCCccc--c-----cc----hhh
Confidence 99999999999999999999999999999999999999999999983 77777665221 0 01 111
Q ss_pred ccccchhhhcccCCCCCcHHHHHHHHHHHHHcCCCCCCCCCCCCccCCCCC
Q 043626 241 SDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTKYTARKRKARF 291 (291)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~wi~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (291)
. |+ +.++++..+++|+||++|||+.|++|+.|+.|||||||||+.||
T Consensus 224 ~-r~---~~~~~~~~~~~r~wil~kke~~r~~g~~v~~dskytgRrrr~rf 270 (270)
T KOG1541|consen 224 K-RR---RWLGRKDEKSSREWILRKKELPRRRGRPVPSDSKYTGRRRRLRF 270 (270)
T ss_pred h-hc---ccCCccccccchhheecHhhhhhhcCCCCCccccccccccccCC
Confidence 1 21 11112223799999999999999999999999999999999998
No 2
>PF12589 WBS_methylT: Methyltransferase involved in Williams-Beuren syndrome; InterPro: IPR022238 This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length. The family is found in association with PF08241 from PFAM. This family is made up of S-adenosylmethionine-dependent methyltransferases []. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype [].
Probab=99.89 E-value=1.2e-23 Score=156.45 Aligned_cols=87 Identities=41% Similarity=0.659 Sum_probs=57.9
Q ss_pred EeeCCCCCCCCCCCCccCCCCCCCCCCCCCcccccceeeccccchhhhcccCCCCCcHHHHHHHHHHHHHcCCCCCCCCC
Q 043626 202 LTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISDRHRPRKKQKITNKGKGREWVLKKKEQMRRKGCAVPPDTK 281 (291)
Q Consensus 202 l~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~k~~~~~~~~~~~~~~~~ 281 (291)
||+|....+..||.+++++.+ ++.+++..+.........+.+..+..+++..+++|+||++|||++|++|++|++|||
T Consensus 1 L~~G~~~~~~~lP~~l~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~kskeWI~~KKE~~R~~Gk~V~~DSK 78 (87)
T PF12589_consen 1 LFAGGPGVPQQLPKGLGEEGE--EDMDEEQVEYSQVVRSSRRRRRKRRKKKKKKKKSKEWILRKKERQRRQGKDVRPDSK 78 (87)
T ss_pred CccCCCCCcccCCccCCcccc--cccchhhhhhhhhhhhhhHHHHHhccccCCCCccHHHHHHHHHHHHHCCCcCCCCCC
Confidence 567765455789999987644 122211111111222222222233334566789999999999999999999999999
Q ss_pred CCCccCCCC
Q 043626 282 YTARKRKAR 290 (291)
Q Consensus 282 ~~~~~~~~~ 290 (291)
||||||+++
T Consensus 79 YTGRKRk~r 87 (87)
T PF12589_consen 79 YTGRKRKPR 87 (87)
T ss_pred CCCCCCCCC
Confidence 999999986
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.85 E-value=5.8e-21 Score=167.71 Aligned_cols=129 Identities=24% Similarity=0.413 Sum_probs=113.5
Q ss_pred chhhccccccchhHH--HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc
Q 043626 17 DTEARKYTSSSRIID--IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER 92 (291)
Q Consensus 17 ~~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~ 92 (291)
+..|.+|+..+++.. .+..+.+.+++.+...+ +.+|||||||||.++..+++.. .+|+|+|+|+.||+.|+++
T Consensus 18 ~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~---g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k 94 (238)
T COG2226 18 DKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKP---GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK 94 (238)
T ss_pred HhhHHHHHhhcccccCcchHHHHHHHHHhhCCCC---CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH
Confidence 478999999775433 45566777888887775 7899999999999999999985 8999999999999999998
Q ss_pred CCc-----ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 93 EVE-----GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 93 ~~~-----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
..+ ++|+++|+ +.+||++++||+|.+.+.|+++.+ ...+|++++|+|||||++++-
T Consensus 95 ~~~~~~~~i~fv~~dA-e~LPf~D~sFD~vt~~fglrnv~d-----------~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 95 LKKKGVQNVEFVVGDA-ENLPFPDNSFDAVTISFGLRNVTD-----------IDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hhccCccceEEEEech-hhCCCCCCccCEEEeeehhhcCCC-----------HHHHHHHHHHhhcCCeEEEEE
Confidence 876 78999998 679999999999999999999988 789999999999999998873
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.83 E-value=1.9e-20 Score=165.30 Aligned_cols=132 Identities=23% Similarity=0.409 Sum_probs=83.8
Q ss_pred ccCCchhhccccccchhHH--HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHH
Q 043626 13 IFYDDTEARKYTSSSRIID--IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLN 87 (291)
Q Consensus 13 ~fy~~~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~ 87 (291)
.+|+ ..|..|+..+++.. ....+.+.+++.+...+ +.+|||+|||||.++..|++. + ..|+|+|+|+.||+
T Consensus 11 ~~Fd-~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~---g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~ 86 (233)
T PF01209_consen 11 KMFD-RIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRP---GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE 86 (233)
T ss_dssp ---------------------------SHHHHHHT--S-----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred HHHH-HHHHHhCCCccccCCcHHHHHHHHHHhccCCCC---CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence 3455 78999998766433 23445566777777665 779999999999999999886 3 69999999999999
Q ss_pred HHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 88 IALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 88 ~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
.|+++.. +++++++|+ +.+||++++||+|++.+.++.++| ....+++++++|||||++++.
T Consensus 87 ~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglrn~~d-----------~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 87 VARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLRNFPD-----------RERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GGG-SS-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHHhhCC-----------HHHHHHHHHHHcCCCeEEEEe
Confidence 9998643 589999998 669999999999999999999987 778999999999999998874
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.83 E-value=1.9e-19 Score=161.62 Aligned_cols=133 Identities=22% Similarity=0.294 Sum_probs=105.1
Q ss_pred cCCchhhccccccchhHH--HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHH
Q 043626 14 FYDDTEARKYTSSSRIID--IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNI 88 (291)
Q Consensus 14 fy~~~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~ 88 (291)
+|+ ..|..|+....... ....+...+++.+.+.+ +.+|||||||+|.++..+++. + ..|+|+|+|+.|++.
T Consensus 38 ~f~-~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~---~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~ 113 (261)
T PLN02233 38 LFN-RIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKM---GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAV 113 (261)
T ss_pred HHH-HhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCC---CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 454 67888987543321 12223334456666655 679999999999999999876 3 589999999999999
Q ss_pred HHhcC--------CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 89 ALERE--------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 89 a~~~~--------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
|+++. .++.++++|+ ..+|+++++||+|+++++++|+.+ ...++++++++|||||++++.
T Consensus 114 A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~l~~~~d-----------~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 114 AASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYGLRNVVD-----------RLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred HHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecccccCCC-----------HHHHHHHHHHHcCcCcEEEEE
Confidence 98653 2478999998 568998999999999999999977 678999999999999999886
Q ss_pred Ec
Q 043626 161 IY 162 (291)
Q Consensus 161 ~~ 162 (291)
.+
T Consensus 182 d~ 183 (261)
T PLN02233 182 DF 183 (261)
T ss_pred EC
Confidence 44
No 6
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.81 E-value=4.4e-19 Score=158.12 Aligned_cols=129 Identities=30% Similarity=0.454 Sum_probs=111.6
Q ss_pred hhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcce
Q 043626 18 TEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGD 97 (291)
Q Consensus 18 ~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~ 97 (291)
..|..|+.. ..+|..+.+.+++.+.... +.+|||||||+|.++..|+..+..++|+|+|+.|++.|+++.....
T Consensus 15 ~aa~~Y~~~---~~~q~~~a~~l~~~l~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~ 88 (251)
T PRK10258 15 RAAAHYEQH---AELQRQSADALLAMLPQRK---FTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADH 88 (251)
T ss_pred HHHHhHhHH---HHHHHHHHHHHHHhcCccC---CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCC
Confidence 445667653 4578889999999887543 6799999999999999999999999999999999999999877678
Q ss_pred EEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626 98 LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 98 ~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~ 164 (291)
++++|+ +.+++.+++||+|+|+.+++|+.+ +..+|.+++++|+|||.+++.+...
T Consensus 89 ~~~~d~-~~~~~~~~~fD~V~s~~~l~~~~d-----------~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 89 YLAGDI-ESLPLATATFDLAWSNLAVQWCGN-----------LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EEEcCc-ccCcCCCCcEEEEEECchhhhcCC-----------HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 899998 557888889999999999999877 6789999999999999999987654
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.79 E-value=3.1e-18 Score=159.41 Aligned_cols=150 Identities=20% Similarity=0.270 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHHhCCCC--CCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC------CcceEE
Q 043626 29 IIDIQAKLSERALELLALPD--DGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALERE------VEGDLL 99 (291)
Q Consensus 29 ~~~iq~~~~~~~lelL~~~~--~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~------~~~~~~ 99 (291)
....|..+.+.+++.+.++. ...+.+|||||||+|.++..|++. +..|+|+|+|+.|++.|+++. ..+.++
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~ 173 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQ 173 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 44566778888898887721 012679999999999999999986 689999999999999887753 247899
Q ss_pred EccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC----------hH--
Q 043626 100 LGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES----------VA-- 167 (291)
Q Consensus 100 ~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~----------~~-- 167 (291)
++|+ ..++|++++||+|+++.+++|+.+ ...++.+++++|+|||++++..+... ..
T Consensus 174 ~~D~-~~~~~~~~~FD~V~s~~~~~h~~d-----------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~ 241 (340)
T PLN02244 174 VADA-LNQPFEDGQFDLVWSMESGEHMPD-----------KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQ 241 (340)
T ss_pred EcCc-ccCCCCCCCccEEEECCchhccCC-----------HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHH
Confidence 9998 457888999999999999999977 67899999999999999998643210 00
Q ss_pred ----------------HHHHHHHHHHHcCCCCcEEEeCC
Q 043626 168 ----------------QRELILGAAMRAGFAGGVVVDYP 190 (291)
Q Consensus 168 ----------------~~~~i~~~~~~aGF~~~~~~~~p 190 (291)
....+..++.++||....+.++.
T Consensus 242 ~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 242 KLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 24467778899999875555554
No 8
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.78 E-value=1.2e-17 Score=154.48 Aligned_cols=162 Identities=21% Similarity=0.241 Sum_probs=122.8
Q ss_pred cccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHH
Q 043626 12 EIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIA 89 (291)
Q Consensus 12 e~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a 89 (291)
..||+ ..|..|+...........+.+.+++.+.+..+ +.+|||||||+|.++..+++. +..++++|+|+.|++.|
T Consensus 77 ~~~y~-~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~--~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A 153 (340)
T PLN02490 77 FWFYR-FLSIVYDHIINPGHWTEDMRDDALEPADLSDR--NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153 (340)
T ss_pred eeEcc-ceeeecCCCeecCcchHHHHHHHHhhcccCCC--CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 34555 67888987432222334566667776665443 679999999999999888875 37899999999999999
Q ss_pred HhcC--CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc--CCC
Q 043626 90 LERE--VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY--PES 165 (291)
Q Consensus 90 ~~~~--~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~--~~~ 165 (291)
+++. .++.++.+|+ ..+++..++||+|+++.+++|+.+ ...+|++++++|+|||++++... +..
T Consensus 154 ~~k~~~~~i~~i~gD~-e~lp~~~~sFDvVIs~~~L~~~~d-----------~~~~L~e~~rvLkPGG~LvIi~~~~p~~ 221 (340)
T PLN02490 154 KQKEPLKECKIIEGDA-EDLPFPTDYADRYVSAGSIEYWPD-----------PQRGIKEAYRVLKIGGKACLIGPVHPTF 221 (340)
T ss_pred HHhhhccCCeEEeccH-HhCCCCCCceeEEEEcChhhhCCC-----------HHHHHHHHHHhcCCCcEEEEEEecCcch
Confidence 8874 3578899998 457888899999999999999876 55789999999999999987421 111
Q ss_pred ------------hHHHHHHHHHHHHcCCCCcEEEe
Q 043626 166 ------------VAQRELILGAAMRAGFAGGVVVD 188 (291)
Q Consensus 166 ------------~~~~~~i~~~~~~aGF~~~~~~~ 188 (291)
....+++.+++.++||....+.+
T Consensus 222 ~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 222 WLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 11356788999999999744444
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.77 E-value=2e-18 Score=129.69 Aligned_cols=92 Identities=34% Similarity=0.493 Sum_probs=80.8
Q ss_pred EEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc--ceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc
Q 043626 56 LDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE--GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA 132 (291)
Q Consensus 56 LDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~--~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~ 132 (291)
||||||+|..+..|++. +..|+|+|+|+.|++.++++... ..+..+|+ ..+||++++||+|+++++++|+.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~sfD~v~~~~~~~~~~~---- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA-EDLPFPDNSFDVVFSNSVLHHLED---- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT-TSSSS-TT-EEEEEEESHGGGSSH----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehH-HhCccccccccccccccceeeccC----
Confidence 89999999999999999 79999999999999999998754 45899998 557999999999999999999955
Q ss_pred CCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 133 SHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 133 ~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
...++++++++|||||+++|
T Consensus 76 -------~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 -------PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -------HHHHHHHHHHHEEEEEEEEE
T ss_pred -------HHHHHHHHHHHcCcCeEEeC
Confidence 78999999999999999986
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.77 E-value=1.3e-17 Score=146.74 Aligned_cols=129 Identities=20% Similarity=0.298 Sum_probs=103.0
Q ss_pred hhhccccccchhHH--HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhc
Q 043626 18 TEARKYTSSSRIID--IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALER 92 (291)
Q Consensus 18 ~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~ 92 (291)
..|..|+....... ......+.++..+.+++ +.+|||||||+|.++..+++. + ..++|+|+|+.|++.|+++
T Consensus 13 ~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~ 89 (231)
T TIGR02752 13 KIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQA---GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQK 89 (231)
T ss_pred HhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCC---CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 56777877544332 12334466777777665 679999999999999999876 2 6999999999999999876
Q ss_pred CC-----cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 93 EV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 93 ~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.. +++++++|+. .++++.++||+|++..+++|+.+ ...++.++.++|+|||.+++..
T Consensus 90 ~~~~~~~~v~~~~~d~~-~~~~~~~~fD~V~~~~~l~~~~~-----------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 90 VKDAGLHNVELVHGNAM-ELPFDDNSFDYVTIGFGLRNVPD-----------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred HHhcCCCceEEEEechh-cCCCCCCCccEEEEecccccCCC-----------HHHHHHHHHHHcCcCeEEEEEE
Confidence 42 4688999984 46777889999999999999876 6689999999999999998754
No 11
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.77 E-value=3.9e-19 Score=153.43 Aligned_cols=187 Identities=17% Similarity=0.138 Sum_probs=140.7
Q ss_pred HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCc----ceEEEccCCCC---CC
Q 043626 40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVE----GDLLLGDMGQG---LG 108 (291)
Q Consensus 40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~----~~~~~~D~~~~---~~ 108 (291)
.=+++..... .+.+||+||||.|.....|.+- +..++++|.|+.+++..+++... +...+.|+... -+
T Consensus 61 fpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 61 FPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCC
Confidence 3344444432 1348999999999999999875 27899999999999999887643 44555666442 35
Q ss_pred CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh-HHHHHHHHHHHHcCCCCcEEE
Q 043626 109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV-AQRELILGAAMRAGFAGGVVV 187 (291)
Q Consensus 109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~-~~~~~i~~~~~~aGF~~~~~~ 187 (291)
...+++|+|+++++|..+ ++......+.+++++|||||.++|..|+..+ .++ .|..+.++
T Consensus 140 ~~~~svD~it~IFvLSAi---------~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaql----------RF~~~~~i 200 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAI---------HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQL----------RFKKGQCI 200 (264)
T ss_pred CCcCccceEEEEEEEecc---------ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHH----------hccCCcee
Confidence 678999999999999877 4455889999999999999999999987542 222 26677889
Q ss_pred eCCCCCCCCcEEEEEeeCCCCCCCCCCCCccCCCCCCCCCCCCCcccccceeeccccchhhhcccCCCCCcHHHHHHH
Q 043626 188 DYPHSSKSRKEFLVLTCGPPSISSEAPKGKVGDMESCSDDESSGDEENRTVCISDRHRPRKKQKITNKGKGREWVLKK 265 (291)
Q Consensus 188 ~~p~~~~~~~~~l~l~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~k 265 (291)
+..+..+......+++.-.........+|+.+. +..+++|+ .++|+|+++|+|.|||.|
T Consensus 201 ~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~----------------~~~~~~rl---~vNr~k~lkm~Rvwvq~~ 259 (264)
T KOG2361|consen 201 SENFYVRGDGTRAYFFTEEELDELFTKAGFEEV----------------QLEVDCRL---LVNRKKQLKMYRVWVQAK 259 (264)
T ss_pred ecceEEccCCceeeeccHHHHHHHHHhcccchh----------------cccceeee---eeehhccCccceEEEEEE
Confidence 998888888888777765544334555666543 34466666 788899999999999876
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.75 E-value=1.3e-17 Score=153.45 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=101.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
+.+|||||||+|.++..|+..|..|+|||+|+.|++.|+.+. ..+.++++|+ +.+++..++||+|++..+++|
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da-e~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA-EKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH-HHhhhccCCCCEEEEhhHHHh
Confidence 569999999999999999999999999999999999998753 2467888887 556777789999999999999
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC---------------------------hHHHHHHHHHHHH
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES---------------------------VAQRELILGAAMR 178 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~---------------------------~~~~~~i~~~~~~ 178 (291)
+.+ ...++..+.++|+|||.+++.+.... ....+++...+.+
T Consensus 211 v~d-----------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 211 VAN-----------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred cCC-----------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence 987 67899999999999999998753211 1135678888888
Q ss_pred cCCCC
Q 043626 179 AGFAG 183 (291)
Q Consensus 179 aGF~~ 183 (291)
+||..
T Consensus 280 aGf~i 284 (322)
T PLN02396 280 ASVDV 284 (322)
T ss_pred cCCeE
Confidence 99874
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.75 E-value=1.3e-17 Score=149.11 Aligned_cols=102 Identities=24% Similarity=0.315 Sum_probs=88.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
+.+|||||||+|.++..|++.++.|+|+|+|+.|++.|+++.. .+.++++|+.+..++.+++||+|++..+++|
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW 124 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence 6799999999999999999999999999999999999988642 3678888884433456789999999999999
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~ 164 (291)
+.+ ...++..++++|+|||.+++.++..
T Consensus 125 ~~~-----------~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 125 VAD-----------PKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred hCC-----------HHHHHHHHHHHcCCCeEEEEEEECc
Confidence 976 5688999999999999999876543
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.75 E-value=2.6e-17 Score=147.17 Aligned_cols=121 Identities=25% Similarity=0.297 Sum_probs=99.1
Q ss_pred hccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcce
Q 043626 20 ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGD 97 (291)
Q Consensus 20 a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~ 97 (291)
+..|...+ ..+......+++.+.... +.+|||||||+|.++..|+.. +.+|+|+|+|+.|++.|+++ .++
T Consensus 4 ~~~y~~~~---~~~~~~~~~ll~~l~~~~---~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--~~~ 75 (255)
T PRK14103 4 PDVYLAFA---DHRGRPFYDLLARVGAER---ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--GVD 75 (255)
T ss_pred HHHHHHHH---hHhhCHHHHHHHhCCCCC---CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--CCc
Confidence 34454433 334456677888887665 689999999999999999987 57999999999999999875 478
Q ss_pred EEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 98 LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 98 ~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
++++|+.+ ++ ..++||+|+|+.++||+++ ...++.+++++|+|||.+++.+
T Consensus 76 ~~~~d~~~-~~-~~~~fD~v~~~~~l~~~~d-----------~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 76 ARTGDVRD-WK-PKPDTDVVVSNAALQWVPE-----------HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEcChhh-CC-CCCCceEEEEehhhhhCCC-----------HHHHHHHHHHhCCCCcEEEEEc
Confidence 89999843 43 4579999999999999977 6789999999999999999864
No 15
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=4.9e-17 Score=145.48 Aligned_cols=123 Identities=28% Similarity=0.421 Sum_probs=104.1
Q ss_pred hccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcce
Q 043626 20 ARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGD 97 (291)
Q Consensus 20 a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~ 97 (291)
|..|.. ....|......+++.+.+.+ +.+|||||||+|.++..+++. +..|+|+|+|+.|++.|+++..++.
T Consensus 6 ~~~Y~~---~~~~~~~~~~~ll~~~~~~~---~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~ 79 (258)
T PRK01683 6 PSLYLK---FEDERTRPARDLLARVPLEN---PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQ 79 (258)
T ss_pred HHHHHH---HHHHhhcHHHHHHhhCCCcC---CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCe
Confidence 556654 33556677888888887665 679999999999999999986 4799999999999999999988889
Q ss_pred EEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 98 LLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 98 ~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
++.+|+... . ..++||+|+++.+++|+.+ ...++..++++|+|||.+++++
T Consensus 80 ~~~~d~~~~-~-~~~~fD~v~~~~~l~~~~d-----------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 80 FVEADIASW-Q-PPQALDLIFANASLQWLPD-----------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEECchhcc-C-CCCCccEEEEccChhhCCC-----------HHHHHHHHHHhcCCCcEEEEEC
Confidence 999998543 2 3569999999999999976 6689999999999999999975
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.74 E-value=8.1e-17 Score=144.82 Aligned_cols=136 Identities=21% Similarity=0.240 Sum_probs=107.6
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLR 110 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~ 110 (291)
..+..+++.+.+.+ +.+|||||||+|..+..|+.. +.+|+|+|+|+.|++.|+++.. .+.+.++|+. ..+++
T Consensus 39 ~~~~~~l~~l~l~~---~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~~~~ 114 (263)
T PTZ00098 39 EATTKILSDIELNE---NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KKDFP 114 (263)
T ss_pred HHHHHHHHhCCCCC---CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cCCCC
Confidence 34667788877776 779999999999999988765 5799999999999999998754 3788899984 46788
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh-------------------HHHHH
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV-------------------AQREL 171 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~-------------------~~~~~ 171 (291)
+++||+|++..+++|++. .....+|++++++|+|||++++..+.... .....
T Consensus 115 ~~~FD~V~s~~~l~h~~~---------~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSY---------ADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQE 185 (263)
T ss_pred CCCeEEEEEhhhHHhCCH---------HHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHH
Confidence 899999999988888742 12678999999999999999987542110 12345
Q ss_pred HHHHHHHcCCCC
Q 043626 172 ILGAAMRAGFAG 183 (291)
Q Consensus 172 i~~~~~~aGF~~ 183 (291)
+..++..+||..
T Consensus 186 ~~~~l~~aGF~~ 197 (263)
T PTZ00098 186 YGDLIKSCNFQN 197 (263)
T ss_pred HHHHHHHCCCCe
Confidence 667777888876
No 17
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.73 E-value=3.3e-17 Score=139.36 Aligned_cols=113 Identities=27% Similarity=0.327 Sum_probs=96.5
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcc
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV 114 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~f 114 (291)
+.-+.+++..-+.-....|.|||||+|+++..|+++ +..++|+|.|++||+.|+++.+++.|..+|+.+..| ...+
T Consensus 16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p--~~~~ 93 (257)
T COG4106 16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKP--EQPT 93 (257)
T ss_pred cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCC--CCcc
Confidence 344555554332212679999999999999999998 489999999999999999999999999999966545 6789
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
|++++|.+|||+++ -..+|..+...|.|||.+.+++-
T Consensus 94 dllfaNAvlqWlpd-----------H~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 94 DLLFANAVLQWLPD-----------HPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred chhhhhhhhhhccc-----------cHHHHHHHHHhhCCCceEEEECC
Confidence 99999999999988 56889999999999999999983
No 18
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.71 E-value=2.4e-16 Score=136.57 Aligned_cols=135 Identities=14% Similarity=0.188 Sum_probs=101.9
Q ss_pred CcccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHH
Q 043626 11 PEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNI 88 (291)
Q Consensus 11 pe~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~ 88 (291)
.+.||....+..|....+.........+.+.+.+..... +.+|||||||+|..+..|++. +..++|+|+|+.|++.
T Consensus 5 ~~~fw~~~~g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~--~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~ 82 (204)
T TIGR03587 5 QEQFWAGEFGKEYIDRNSRQSLVAAKLAMFARALNRLPK--IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK 82 (204)
T ss_pred HHHHhcCcccchhhhccccHHHHHHHHHHHHHHHHhcCC--CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 456777555667877665444333344444444432222 668999999999999999886 5899999999999999
Q ss_pred HHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 89 ALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 89 a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
|+++...+.++.+|+.+ ++++++||+|+++.+++|+.. ..+..++.++++++ ++.+++.
T Consensus 83 A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p---------~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 83 AKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGVLIHINP---------DNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred HHhhCCCCcEEEeeccC--CCCCCCEEEEEECChhhhCCH---------HHHHHHHHHHHhhc--CcEEEEE
Confidence 99988888899999855 778899999999999999832 33778999999997 3455553
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=3.4e-16 Score=144.60 Aligned_cols=137 Identities=23% Similarity=0.290 Sum_probs=105.9
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHh--c----CCcceEEEccCCCCCCCC
Q 043626 38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALE--R----EVEGDLLLGDMGQGLGLR 110 (291)
Q Consensus 38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~--~----~~~~~~~~~D~~~~~~~~ 110 (291)
.+++..+.... +.+|||||||+|.++..++..| ..|+|+|+|+.|+..+.. + ...+.++.+|+ +.+++
T Consensus 112 ~~l~~~l~~l~---g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~-e~lp~- 186 (322)
T PRK15068 112 DRVLPHLSPLK---GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI-EQLPA- 186 (322)
T ss_pred HHHHHhhCCCC---CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH-HHCCC-
Confidence 34555555333 6799999999999999999987 579999999999875432 1 23578899998 55677
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-----------CCC----------hHHH
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY-----------PES----------VAQR 169 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-----------~~~----------~~~~ 169 (291)
+++||+|+|..+++|+.+ +..+|++++++|+|||.+++... |.. ....
T Consensus 187 ~~~FD~V~s~~vl~H~~d-----------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~ 255 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRS-----------PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSV 255 (322)
T ss_pred cCCcCEEEECChhhccCC-----------HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCH
Confidence 789999999999999876 67899999999999999998631 110 0135
Q ss_pred HHHHHHHHHcCCCCcEEEeCC
Q 043626 170 ELILGAAMRAGFAGGVVVDYP 190 (291)
Q Consensus 170 ~~i~~~~~~aGF~~~~~~~~p 190 (291)
..+..++.++||....+++..
T Consensus 256 ~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 256 PALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred HHHHHHHHHcCCceEEEEeCC
Confidence 678999999999985555543
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.70 E-value=6.3e-17 Score=140.49 Aligned_cols=103 Identities=19% Similarity=0.332 Sum_probs=87.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc----ceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE----GDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+.+|||||||-|.+++.|+..|..|+|+|+|+.+|+.|+....+ +++.+..+ +.+....++||+|+|..+++|++
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~-edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATV-EDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhH-HHHHhcCCCccEEEEhhHHHccC
Confidence 67999999999999999999999999999999999999976543 44555554 33444458999999999999999
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCCh
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESV 166 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~ 166 (291)
+ ...|+..+.+++||||.+++++...+.
T Consensus 139 d-----------p~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 139 D-----------PESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred C-----------HHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 8 678999999999999999998765443
No 21
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.70 E-value=1e-16 Score=132.24 Aligned_cols=95 Identities=27% Similarity=0.315 Sum_probs=79.3
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+.+|||||||+|.++..+++.|.+++|+|+|+.+++. ........+. ...++.+++||+|+|+.+++|+++
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~fD~i~~~~~l~~~~d--- 93 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK-----RNVVFDNFDA-QDPPFPDGSFDLIICNDVLEHLPD--- 93 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH-----TTSEEEEEEC-HTHHCHSSSEEEEEEESSGGGSSH---
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh-----hhhhhhhhhh-hhhhccccchhhHhhHHHHhhccc---
Confidence 7799999999999999999999999999999999988 2222333322 123455789999999999999987
Q ss_pred cCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
+..+++.++++|+|||++++.+..
T Consensus 94 --------~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 94 --------PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --------HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --------HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 779999999999999999997653
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.70 E-value=3.9e-16 Score=151.48 Aligned_cols=133 Identities=23% Similarity=0.356 Sum_probs=106.4
Q ss_pred HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCC
Q 043626 36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLR 110 (291)
Q Consensus 36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~ 110 (291)
.++.+++.+.+.+ +.+|||||||+|..+..|+.. +..++|+|+|+.|++.|+++.. .+.++++|+. ..+++
T Consensus 254 ~te~l~~~~~~~~---~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~-~~~~~ 329 (475)
T PLN02336 254 TTKEFVDKLDLKP---GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCT-KKTYP 329 (475)
T ss_pred HHHHHHHhcCCCC---CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcc-cCCCC
Confidence 3566777777654 679999999999999988876 6899999999999999987653 3678899984 46677
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------------------hHHHHHH
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------------------VAQRELI 172 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------------------~~~~~~i 172 (291)
+++||+|+|..+++|+.+ ...++.+++++|+|||.+++..+... ......+
T Consensus 330 ~~~fD~I~s~~~l~h~~d-----------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 398 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQD-----------KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAY 398 (475)
T ss_pred CCCEEEEEECCcccccCC-----------HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHH
Confidence 789999999999999977 66899999999999999998754211 1124456
Q ss_pred HHHHHHcCCCC
Q 043626 173 LGAAMRAGFAG 183 (291)
Q Consensus 173 ~~~~~~aGF~~ 183 (291)
.+++.++||..
T Consensus 399 ~~~l~~aGF~~ 409 (475)
T PLN02336 399 GQMLKDAGFDD 409 (475)
T ss_pred HHHHHHCCCee
Confidence 67777788875
No 23
>PRK05785 hypothetical protein; Provisional
Probab=99.70 E-value=4e-16 Score=137.30 Aligned_cols=128 Identities=18% Similarity=0.298 Sum_probs=96.7
Q ss_pred cCCchhhccccccchhHH--HHHHHHHHHHHHhCC--CCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHH
Q 043626 14 FYDDTEARKYTSSSRIID--IQAKLSERALELLAL--PDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNI 88 (291)
Q Consensus 14 fy~~~~a~~Y~~~~~~~~--iq~~~~~~~lelL~~--~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~ 88 (291)
+|+ ..|..|+...++.. ....+...+++.+.. +. +.+|||||||||.++..|++. +.+++|+|+|+.|++.
T Consensus 14 ~f~-~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~---~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 14 AYN-KIPKAYDRANRFISFNQDVRWRAELVKTILKYCGR---PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred HHH-hhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCC---CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 454 68888987543221 112233334444321 22 569999999999999999988 5899999999999999
Q ss_pred HHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 89 ALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 89 a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
|+++ ..++++|+ +.+||++++||+|++.++++|+.+ +..++++++++|+|. ..++.+
T Consensus 90 a~~~---~~~~~~d~-~~lp~~d~sfD~v~~~~~l~~~~d-----------~~~~l~e~~RvLkp~-~~ile~ 146 (226)
T PRK05785 90 NLVA---DDKVVGSF-EALPFRDKSFDVVMSSFALHASDN-----------IEKVIAEFTRVSRKQ-VGFIAM 146 (226)
T ss_pred HHhc---cceEEech-hhCCCCCCCEEEEEecChhhccCC-----------HHHHHHHHHHHhcCc-eEEEEe
Confidence 9876 35678888 568999999999999999999877 778999999999994 334444
No 24
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.69 E-value=8.7e-16 Score=140.93 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=102.7
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHh--c----CCcceEEEccCCCCCCCC
Q 043626 38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALE--R----EVEGDLLLGDMGQGLGLR 110 (291)
Q Consensus 38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~--~----~~~~~~~~~D~~~~~~~~ 110 (291)
.+++..+.... +.+|||||||+|.++..++..| ..|+|+|+|+.|+..+.. + ...+.+...++. .+++
T Consensus 111 ~~~l~~l~~~~---g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie-~lp~- 185 (314)
T TIGR00452 111 DRVLPHLSPLK---GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE-QLHE- 185 (314)
T ss_pred HHHHHhcCCCC---CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH-HCCC-
Confidence 45666665544 6799999999999999998888 579999999999876432 1 223567777773 4554
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-----------CC----------hHHH
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-----------ES----------VAQR 169 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-----------~~----------~~~~ 169 (291)
..+||+|+|+.+++|+.+ +..+|.+++++|+|||.+++.+.. .. ....
T Consensus 186 ~~~FD~V~s~gvL~H~~d-----------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~ 254 (314)
T TIGR00452 186 LYAFDTVFSMGVLYHRKS-----------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSV 254 (314)
T ss_pred CCCcCEEEEcchhhccCC-----------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCH
Confidence 358999999999999977 678999999999999999986321 00 0135
Q ss_pred HHHHHHHHHcCCCCcEEEeC
Q 043626 170 ELILGAAMRAGFAGGVVVDY 189 (291)
Q Consensus 170 ~~i~~~~~~aGF~~~~~~~~ 189 (291)
..+..++.++||....+++.
T Consensus 255 ~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 255 SALKNWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHHHHHCCCeEEEEEec
Confidence 67788999999997444443
No 25
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.69 E-value=1.1e-15 Score=134.19 Aligned_cols=130 Identities=31% Similarity=0.437 Sum_probs=104.9
Q ss_pred hhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-c
Q 043626 19 EARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-E 95 (291)
Q Consensus 19 ~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-~ 95 (291)
.+..|+.. ..+|..+...+++.+.......+.+|||||||+|.++..+++.+ ..++++|+|+.++..+..+.. .
T Consensus 5 ~~~~y~~~---~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (240)
T TIGR02072 5 AAKTYDRH---AKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSEN 81 (240)
T ss_pred hhhchhHH---HHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCC
Confidence 34556542 45677888888887764321125689999999999999999886 578999999999999988764 4
Q ss_pred ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 96 GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 96 ~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
+.++.+|+. ..++.+++||+|+++.+++|+.+ +..++..+.++|+|||.+++....
T Consensus 82 ~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~~-----------~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 82 VQFICGDAE-KLPLEDSSFDLIVSNLALQWCDD-----------LSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CeEEecchh-hCCCCCCceeEEEEhhhhhhccC-----------HHHHHHHHHHHcCCCcEEEEEeCC
Confidence 688999984 56777889999999999999976 678999999999999999997643
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.69 E-value=5.4e-16 Score=127.90 Aligned_cols=99 Identities=26% Similarity=0.390 Sum_probs=86.3
Q ss_pred CCeEEEEcCCCchhHHHHHH-c--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC--CCCCcccEEEECC
Q 043626 52 PRLLLDIGCGSGLSGETLSE-N--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG--LRPGVVDGAISIS 121 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~-~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~--~~~~~fD~Vis~~ 121 (291)
+.+|||+|||+|.++..|++ . +.+++|+|+|+.|++.|+++. .++.++++|+.+ ++ +. +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEEEEcC
Confidence 67999999999999999994 4 489999999999999999853 358999999966 66 54 8999999999
Q ss_pred chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
+++|+.+ ...+++.+.++|++||.+++..+.
T Consensus 82 ~l~~~~~-----------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPD-----------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSH-----------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccC-----------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999977 678999999999999999998765
No 27
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=9.1e-16 Score=134.79 Aligned_cols=133 Identities=21% Similarity=0.371 Sum_probs=104.1
Q ss_pred cccCCchhhccccccchhH--HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHH
Q 043626 12 EIFYDDTEARKYTSSSRII--DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSML 86 (291)
Q Consensus 12 e~fy~~~~a~~Y~~~~~~~--~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml 86 (291)
..+|+ ..+..|+...... .........++..+...+ +.+|||||||+|.++..++..+ .+++++|+++.++
T Consensus 14 ~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 89 (239)
T PRK00216 14 AEMFD-SIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRP---GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML 89 (239)
T ss_pred HHHHH-HhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCC---CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH
Confidence 44666 5678887432211 123445566777776654 6799999999999999998875 7999999999999
Q ss_pred HHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 87 NIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 87 ~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+.++++.. .+.++.+|+. ..++..++||+|++..+++++.+ +..++..+.++|+|||.+++.
T Consensus 90 ~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l~~~~~-----------~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 90 AVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGLRNVPD-----------IDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred HHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEecccccCCC-----------HHHHHHHHHHhccCCcEEEEE
Confidence 99998753 3678888884 45666789999999999998876 678999999999999999874
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.68 E-value=3.1e-16 Score=122.08 Aligned_cols=101 Identities=28% Similarity=0.340 Sum_probs=83.6
Q ss_pred CCeEEEEcCCCchhHHHHHH--cCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCCCCCcccEEEECC-c
Q 043626 52 PRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGLRPGVVDGAISIS-A 122 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~~~~~fD~Vis~~-~ 122 (291)
+.+|||||||+|.++..+++ .+.+++|+|+|+.|++.|+++. ..+.++++|+ ....-..+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCc
Confidence 56999999999999999999 6799999999999999999887 3579999998 32233356799999998 6
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
++++.. ......+++.+.+.|+|||++++..
T Consensus 81 ~~~~~~--------~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLP--------LDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCH--------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccc--------hhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 665532 1336789999999999999999875
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.68 E-value=5e-16 Score=140.12 Aligned_cols=119 Identities=29% Similarity=0.354 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEEE
Q 043626 28 RIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLLL 100 (291)
Q Consensus 28 ~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~~ 100 (291)
.+...|..+.+.+++.+.+++ +.+|||||||.|.++..+++. |.+|+|+.+|+...+.++++.. .+.+.+
T Consensus 42 ~Le~AQ~~k~~~~~~~~~l~~---G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~ 118 (273)
T PF02353_consen 42 TLEEAQERKLDLLCEKLGLKP---GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRL 118 (273)
T ss_dssp -HHHHHHHHHHHHHTTTT--T---T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE
T ss_pred hHHHHHHHHHHHHHHHhCCCC---CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 377889999999999999987 889999999999999999998 8999999999999999987653 267888
Q ss_pred ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
.|.. .++ ++||.|||+.+++|+.. +.+..+|+.+.++|+|||+++++..
T Consensus 119 ~D~~-~~~---~~fD~IvSi~~~Ehvg~---------~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 119 QDYR-DLP---GKFDRIVSIEMFEHVGR---------KNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp S-GG-G------S-SEEEEESEGGGTCG---------GGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred eecc-ccC---CCCCEEEEEechhhcCh---------hHHHHHHHHHHHhcCCCcEEEEEec
Confidence 8873 233 39999999999999943 2278999999999999999998754
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=6.5e-16 Score=133.13 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=86.4
Q ss_pred HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCc
Q 043626 39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGV 113 (291)
Q Consensus 39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~ 113 (291)
.+++.+...+ +.+|||+|||+|..+..|++.|.+|+|+|+|+.|++.++++. .++.+.+.|+. .+++ +++
T Consensus 21 ~l~~~l~~~~---~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~-~~~~-~~~ 95 (197)
T PRK11207 21 EVLEAVKVVK---PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLN-NLTF-DGE 95 (197)
T ss_pred HHHHhcccCC---CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChh-hCCc-CCC
Confidence 3455555544 679999999999999999999999999999999999887643 23677888874 3455 467
Q ss_pred ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
||+|+|+.+++|+.. .....++..++++|+|||.+++
T Consensus 96 fD~I~~~~~~~~~~~---------~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 96 YDFILSTVVLMFLEA---------KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cCEEEEecchhhCCH---------HHHHHHHHHHHHHcCCCcEEEE
Confidence 999999999988732 2367999999999999999654
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.67 E-value=3.1e-15 Score=132.54 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=95.1
Q ss_pred CCchhhccccccch-hHHHHHHHHHHHHHHhC--CCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHH
Q 043626 15 YDDTEARKYTSSSR-IIDIQAKLSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLN 87 (291)
Q Consensus 15 y~~~~a~~Y~~~~~-~~~iq~~~~~~~lelL~--~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~ 87 (291)
|++..|..|+...+ .......+.+.+..+.. .++ +.+|||||||+|..+..+++. +..++|+|+|+.|++
T Consensus 17 ~~~~~a~~y~~~~~~~~p~y~~~~~~~~~l~~~~~~~---~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~ 93 (239)
T TIGR00740 17 FDENVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTP---DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVE 93 (239)
T ss_pred cChHHHHhCcchhhccCCCHHHHHHHHHHHHHHhCCC---CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHH
Confidence 45456778887532 11112223333332221 122 569999999999999988874 478999999999999
Q ss_pred HHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 88 IALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 88 ~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.|+++.. .+.++++|+ ..+++ ..+|+|++++++||+.+ .....++++++++|+|||.+++..
T Consensus 94 ~a~~~~~~~~~~~~v~~~~~d~-~~~~~--~~~d~v~~~~~l~~~~~---------~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 94 RCRQHIAAYHSEIPVEILCNDI-RHVEI--KNASMVILNFTLQFLPP---------EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred HHHHHHHhcCCCCCeEEEECCh-hhCCC--CCCCEEeeecchhhCCH---------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 9987642 368899998 44554 35899999999999843 225689999999999999999873
No 32
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=1.4e-15 Score=136.26 Aligned_cols=121 Identities=25% Similarity=0.342 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC------cceEEE
Q 043626 28 RIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV------EGDLLL 100 (291)
Q Consensus 28 ~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~------~~~~~~ 100 (291)
.+...|..-.+.+++.|.+.+ +++|||||||.|.+...+++. +.+|+|+++|+++.+.++++.. .+++..
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~---G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l 128 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKP---GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL 128 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCC---CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEe
Confidence 477788899999999999998 899999999999999999988 6999999999999999988543 367888
Q ss_pred ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626 101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~ 164 (291)
.|..+ + .+.||-|||+.+++|+-. .....||+.++++|+|||++++.....
T Consensus 129 ~d~rd-~---~e~fDrIvSvgmfEhvg~---------~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 129 QDYRD-F---EEPFDRIVSVGMFEHVGK---------ENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred ccccc-c---ccccceeeehhhHHHhCc---------ccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 88733 3 345999999999999954 337899999999999999999976554
No 33
>PRK08317 hypothetical protein; Provisional
Probab=99.66 E-value=5e-15 Score=129.71 Aligned_cols=112 Identities=30% Similarity=0.454 Sum_probs=94.6
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGL 107 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~ 107 (291)
.+.+.+++.+.+.+ +.+|||+|||+|.++..++... ..++|+|+|+.+++.++++ ...+.+...|+ ...
T Consensus 6 ~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~ 81 (241)
T PRK08317 6 RYRARTFELLAVQP---GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA-DGL 81 (241)
T ss_pred HHHHHHHHHcCCCC---CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc-ccC
Confidence 34456777777776 6799999999999999998763 6899999999999999886 23478888887 446
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
++..++||+|++..+++|+.+ ...+++.++++|+|||.+++..
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLED-----------PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCCCceEEEEechhhccCC-----------HHHHHHHHHHHhcCCcEEEEEe
Confidence 777889999999999999977 6789999999999999999854
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=4.5e-15 Score=132.29 Aligned_cols=133 Identities=17% Similarity=0.264 Sum_probs=98.0
Q ss_pred cccCCchhhccccccch-----hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCC
Q 043626 12 EIFYDDTEARKYTSSSR-----IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDIS 82 (291)
Q Consensus 12 e~fy~~~~a~~Y~~~~~-----~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis 82 (291)
...|++..|..|+...+ ...++ .+...++..+ +++ +.+|||||||+|..+..+++. +.+++|+|+|
T Consensus 17 ~~~f~~~~a~~yd~~~~~~~p~y~~~~-~~~~~~~~~~-~~~---~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S 91 (247)
T PRK15451 17 DWTFDERVAEVFPDMIQRSVPGYSNII-SMIGMLAERF-VQP---GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNS 91 (247)
T ss_pred CCccChHHHHhhhhHHHhcCCChHHHH-HHHHHHHHHh-CCC---CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCC
Confidence 45567777888977643 11122 2222333322 223 679999999999999888762 4799999999
Q ss_pred HHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcE
Q 043626 83 QSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGAR 156 (291)
Q Consensus 83 ~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~ 156 (291)
+.|++.|+++.. .+.++++|+. .+++ +.+|+|+++.++||+.+ .....++++++++|+|||.
T Consensus 92 ~~ml~~A~~~~~~~~~~~~v~~~~~d~~-~~~~--~~~D~vv~~~~l~~l~~---------~~~~~~l~~i~~~LkpGG~ 159 (247)
T PRK15451 92 PAMIERCRRHIDAYKAPTPVDVIEGDIR-DIAI--ENASMVVLNFTLQFLEP---------SERQALLDKIYQGLNPGGA 159 (247)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEeCChh-hCCC--CCCCEEehhhHHHhCCH---------HHHHHHHHHHHHhcCCCCE
Confidence 999999988753 4788999984 3554 45999999999999853 2256899999999999999
Q ss_pred EEEEE
Q 043626 157 AVFQI 161 (291)
Q Consensus 157 lv~~~ 161 (291)
+++..
T Consensus 160 l~l~e 164 (247)
T PRK15451 160 LVLSE 164 (247)
T ss_pred EEEEE
Confidence 99863
No 35
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.65 E-value=1.8e-15 Score=131.76 Aligned_cols=132 Identities=18% Similarity=0.239 Sum_probs=106.8
Q ss_pred hhhccccccchhH--HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--------CCeEEEEeCCHHHHH
Q 043626 18 TEARKYTSSSRII--DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--------GHQWIGLDISQSMLN 87 (291)
Q Consensus 18 ~~a~~Y~~~~~~~--~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--------g~~v~gvDis~~ml~ 87 (291)
..|.+|+...... .+++-+-+..+..|.... ++++||++||||.++..+.++ +.+|+.+|||+.||.
T Consensus 68 ~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~---~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~ 144 (296)
T KOG1540|consen 68 SVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGK---GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLA 144 (296)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHhhhccCCCC---CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHH
Confidence 5667777654322 244455566777777665 789999999999999999875 268999999999999
Q ss_pred HHHhcCCc--------ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 88 IALEREVE--------GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 88 ~a~~~~~~--------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
.++++... ..|+++|+ +.+||++.+||..++.+.+..+.+ +.+.++++|++|||||++.+
T Consensus 145 vgkqRa~~~~l~~~~~~~w~~~dA-E~LpFdd~s~D~yTiafGIRN~th-----------~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 145 VGKQRAKKRPLKASSRVEWVEGDA-EDLPFDDDSFDAYTIAFGIRNVTH-----------IQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred HHHHHHhhcCCCcCCceEEEeCCc-ccCCCCCCcceeEEEecceecCCC-----------HHHHHHHHHHhcCCCcEEEE
Confidence 99988722 57899998 679999999999999999988877 77899999999999999987
Q ss_pred EEcCC
Q 043626 160 QIYPE 164 (291)
Q Consensus 160 ~~~~~ 164 (291)
-.++.
T Consensus 213 LeFsk 217 (296)
T KOG1540|consen 213 LEFSK 217 (296)
T ss_pred EEccc
Confidence 55543
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.65 E-value=1.5e-15 Score=130.60 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=84.5
Q ss_pred HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcc
Q 043626 39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVV 114 (291)
Q Consensus 39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~f 114 (291)
.+++.+.... +.+|||+|||+|.++..|+++|..|+|+|+|+.|++.++++.. .+.+...|+. ..++ +++|
T Consensus 21 ~l~~~~~~~~---~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~~-~~~f 95 (195)
T TIGR00477 21 AVREAVKTVA---PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAAL-NEDY 95 (195)
T ss_pred HHHHHhccCC---CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hccc-cCCC
Confidence 3444554444 5699999999999999999999999999999999998876432 3566777763 3444 4689
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
|+|+++.+++|+.. .....++++++++|+|||++++.
T Consensus 96 D~I~~~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 96 DFIFSTVVFMFLQA---------GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CEEEEecccccCCH---------HHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999999988732 23678999999999999996654
No 37
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.65 E-value=5.2e-16 Score=135.81 Aligned_cols=95 Identities=26% Similarity=0.401 Sum_probs=81.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc-----------ceEEEccCCCCCCCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE-----------GDLLLGDMGQGLGLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~-----------~~~~~~D~~~~~~~~~~~fD~Vis~ 120 (291)
+..|||+|||+|++++.|+..|..|+|+|+++.|++.|++.... +.+.+.|+.. + .+.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-~---~~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-L---TGKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh-c---ccccceeeeH
Confidence 47899999999999999999999999999999999999987321 3455556532 2 3459999999
Q ss_pred CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.+++|+.+ +..|+..+.+.|+|||++++++
T Consensus 166 evleHV~d-----------p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 166 EVLEHVKD-----------PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred HHHHHHhC-----------HHHHHHHHHHHhCCCCceEeee
Confidence 99999988 7899999999999999999964
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.64 E-value=7e-15 Score=127.83 Aligned_cols=129 Identities=21% Similarity=0.358 Sum_probs=101.6
Q ss_pred hhhccccccchhH--HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhc
Q 043626 18 TEARKYTSSSRII--DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALER 92 (291)
Q Consensus 18 ~~a~~Y~~~~~~~--~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~ 92 (291)
..+..|+...... ..+......+++.+...+ +.+|||+|||+|.++..++..+ ..++++|+++.+++.+.++
T Consensus 7 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~ 83 (223)
T TIGR01934 7 RIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFK---GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKK 83 (223)
T ss_pred HHHhhhhHHHHHHhcccHHHHHHHHHHHhccCC---CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHH
Confidence 5666776653221 112345556677776654 6799999999999999998875 3899999999999999887
Q ss_pred CC---cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 93 EV---EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 93 ~~---~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.. .+.++.+|+.+ .++..++||+|+++.+++|+.+ +..+++.+.+.|+|||++++..
T Consensus 84 ~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~~-----------~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 84 SELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRNVTD-----------IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred hccCCCceEEecchhc-CCCCCCcEEEEEEeeeeCCccc-----------HHHHHHHHHHHcCCCcEEEEEE
Confidence 63 47888899844 6677789999999999998866 6789999999999999999753
No 39
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.64 E-value=5.4e-16 Score=119.13 Aligned_cols=91 Identities=29% Similarity=0.444 Sum_probs=76.4
Q ss_pred EEEEcCCCchhHHHHHHcC-----CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEEC-Cchh
Q 043626 55 LLDIGCGSGLSGETLSENG-----HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISI-SAVQ 124 (291)
Q Consensus 55 VLDiGcGsG~~~~~L~~~g-----~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~-~~l~ 124 (291)
|||+|||+|..+..+.... ..++|+|+|+.|++.++++. ..++++++|+ ..+++..++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999874 89999999999999999887 4689999999 4477778899999995 4599
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCc
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGA 155 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG 155 (291)
|+.+ ..+..+|+++.++|+|||
T Consensus 80 ~~~~---------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSP---------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSH---------HHHHHHHHHHHHTEEEEE
T ss_pred CCCH---------HHHHHHHHHHHHHhCCCC
Confidence 8743 347899999999999998
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.63 E-value=6.4e-15 Score=132.86 Aligned_cols=120 Identities=25% Similarity=0.347 Sum_probs=96.4
Q ss_pred CCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
+.+|||||||+|..+..++.. + .+|+|+|+|+.|++.|+++. ..+.++.+|+ ..+++.+++||+|+++.++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCcc
Confidence 679999999999988777764 3 57999999999999998753 3467888998 5577878899999999999
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC--------------------hHHHHHHHHHHHHcCCCC
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES--------------------VAQRELILGAAMRAGFAG 183 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~--------------------~~~~~~i~~~~~~aGF~~ 183 (291)
+|+++ ...+|.+++++|+|||++++...... ......+..++..+||..
T Consensus 157 ~~~~d-----------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 157 NLSPD-----------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cCCCC-----------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 98876 56899999999999999998532110 113446777888889986
No 41
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.62 E-value=2.4e-14 Score=121.76 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=90.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+.+|||||||+|.++..++..+ .+|+|+|+|+.|++.++++. .++.++++|+.+ ++ ..++||+|+|+. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-FQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-cc-ccCCccEEEehh-hh
Confidence 5699999999999999988664 68999999999998887542 247889999854 43 357999999875 33
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
+ +..+++.++++|+|||.+++...+....+...+.+.+...||..
T Consensus 120 ~--------------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 120 S--------------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred C--------------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceE
Confidence 3 45678889999999999999987666666666666666677764
No 42
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.62 E-value=1.9e-14 Score=121.98 Aligned_cols=133 Identities=21% Similarity=0.242 Sum_probs=101.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+.+|||+|||+|.++..++..+.+++++|+|+.|++.++++. ..+.++.+|+... ..++||+|+++..+++..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCCCc
Confidence 568999999999999999999889999999999999998864 2467788887442 246999999998887665
Q ss_pred cccccC----------CchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626 128 NADKAS----------HEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY 189 (291)
Q Consensus 128 ~~~~~~----------~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~ 189 (291)
+..... ......+..++..+.++|+|||.+++...... +...+...+.+.||....+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCeEEEEEEe
Confidence 432211 01122367899999999999999998764332 3567788889999987555444
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.61 E-value=8.7e-17 Score=122.89 Aligned_cols=91 Identities=33% Similarity=0.444 Sum_probs=60.7
Q ss_pred EEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCCCCC-CCCcccEEEECCchhhhc
Q 043626 56 LDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQGLGL-RPGVVDGAISISAVQWLC 127 (291)
Q Consensus 56 LDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~~~~-~~~~fD~Vis~~~l~~l~ 127 (291)
||||||+|.++..+.+. +.+++|+|+|+.|++.|+++... ...+..+..+.... ..++||+|++++++||+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999988 58999999999999888776543 12333332222222 236999999999999996
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARA 157 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~l 157 (291)
+ +..++++++++|+|||+|
T Consensus 81 ~-----------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D-----------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------------HHHHHHHHTTT-TSS-EE
T ss_pred h-----------HHHHHHHHHHHcCCCCCC
Confidence 5 789999999999999986
No 44
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.61 E-value=5.5e-14 Score=120.09 Aligned_cols=112 Identities=18% Similarity=0.139 Sum_probs=88.5
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++. .++.++.+|+.+ ++. .++||+|+++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~-~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEE-FGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhh-CCC-CCCccEEEEccc--
Confidence 679999999999999988864 489999999999999998754 237889999854 555 679999998742
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
.+ +..++..++++|+|||++++...+. ....+..+.+..|..-
T Consensus 122 --~~-----------~~~~l~~~~~~LkpGG~lv~~~~~~---~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 122 --AS-----------LSDLVELCLPLLKPGGRFLALKGRD---PEEEIAELPKALGGKV 164 (187)
T ss_pred --cC-----------HHHHHHHHHHhcCCCeEEEEEeCCC---hHHHHHHHHHhcCceE
Confidence 22 5689999999999999999987554 3444555666667764
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.60 E-value=6.9e-15 Score=142.74 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=108.3
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCC-CCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQ-GLGLR 110 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~-~~~~~ 110 (291)
.....+++.+...+ +.+|||||||+|.++..|++.+.+++|+|+|+.|++.+.... .++.++++|+.. .++++
T Consensus 24 ~~~~~il~~l~~~~---~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 24 EERPEILSLLPPYE---GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhhhHHHhhcCccC---CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence 33456677766544 569999999999999999999999999999999999886532 357889999853 45777
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc-------------CCChHHHHHHHHHHH
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY-------------PESVAQRELILGAAM 177 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~-------------~~~~~~~~~i~~~~~ 177 (291)
.++||+|+++.+++|+.+ ..+..++..++++|+|||++++.-. |........+...+.
T Consensus 101 ~~~fD~I~~~~~l~~l~~---------~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 171 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSD---------KEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFK 171 (475)
T ss_pred CCCEEEEehhhhHHhCCH---------HHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHH
Confidence 889999999999999955 2267899999999999999998521 111123667888899
Q ss_pred HcCCCC
Q 043626 178 RAGFAG 183 (291)
Q Consensus 178 ~aGF~~ 183 (291)
++||..
T Consensus 172 ~~~~~~ 177 (475)
T PLN02336 172 ECHTRD 177 (475)
T ss_pred Hheecc
Confidence 999874
No 46
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.60 E-value=1.9e-14 Score=135.86 Aligned_cols=121 Identities=23% Similarity=0.330 Sum_probs=100.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc--ceEEEccC
Q 043626 27 SRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE--GDLLLGDM 103 (291)
Q Consensus 27 ~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~--~~~~~~D~ 103 (291)
..+...|......+++.+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++... +++...|.
T Consensus 146 ~~L~~Aq~~k~~~l~~~l~l~~---g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~ 222 (383)
T PRK11705 146 DTLEEAQEAKLDLICRKLQLKP---GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY 222 (383)
T ss_pred CCHHHHHHHHHHHHHHHhCCCC---CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECch
Confidence 4466778888888999988876 789999999999999999876 68999999999999999987643 56777776
Q ss_pred CCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 104 GQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 104 ~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
.. + +++||.|+|+.+++|+.. ..+..+|+.++++|+|||.++++...
T Consensus 223 ~~-l---~~~fD~Ivs~~~~ehvg~---------~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 223 RD-L---NGQFDRIVSVGMFEHVGP---------KNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred hh-c---CCCCCEEEEeCchhhCCh---------HHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 32 2 478999999999999843 22678999999999999999998654
No 47
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.60 E-value=5.4e-14 Score=123.90 Aligned_cols=145 Identities=20% Similarity=0.247 Sum_probs=112.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-CCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-LRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-~~~~~fD~Vis~~~ 122 (291)
..+|||||||+|.++..++.+ . .+++|||+++.|.+.|+++.. .+++++.|+.+... ....+||+||||..
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 679999999999999999988 4 899999999999999998753 37999999965432 33457999999965
Q ss_pred hhhhccccccC---------CchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC-cEEEeCCCC
Q 043626 123 VQWLCNADKAS---------HEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG-GVVVDYPHS 192 (291)
Q Consensus 123 l~~l~~~~~~~---------~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~-~~~~~~p~~ 192 (291)
+.-... ... |.....+..+++.+.++||+||.+.+.. .++.+.+|...+.+.+|.. .++..||..
T Consensus 125 yf~~~~--~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---r~erl~ei~~~l~~~~~~~k~i~~V~p~~ 199 (248)
T COG4123 125 YFKQGS--RLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH---RPERLAEIIELLKSYNLEPKRIQFVYPKI 199 (248)
T ss_pred CCCCcc--ccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe---cHHHHHHHHHHHHhcCCCceEEEEecCCC
Confidence 543222 222 3333346899999999999999999998 6678889999999999997 556666666
Q ss_pred CCCCcEEEE
Q 043626 193 SKSRKEFLV 201 (291)
Q Consensus 193 ~~~~~~~l~ 201 (291)
.+.....|+
T Consensus 200 ~k~A~~vLv 208 (248)
T COG4123 200 GKAANRVLV 208 (248)
T ss_pred CCcceEEEE
Confidence 544444433
No 48
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.60 E-value=5.8e-14 Score=119.82 Aligned_cols=135 Identities=20% Similarity=0.214 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQ 105 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~ 105 (291)
...+...+++.+.+.+ +.+|||||||+|.++..++..+ .+++++|+|+.|++.|+++. ..+.++.+|+..
T Consensus 16 ~~~~r~~~~~~l~~~~---~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 16 KEEVRALALSKLELHR---AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred hHHHHHHHHHhcCCCC---CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 3455666778887765 6799999999999999998874 69999999999999998754 246778887632
Q ss_pred CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcE
Q 043626 106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGV 185 (291)
Q Consensus 106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~ 185 (291)
++ .++||+|++.....+ +..++..++++|+|||++++.... ..+...+...+.+.||....
T Consensus 93 --~~-~~~~D~v~~~~~~~~--------------~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 93 --EL-PGKADAIFIGGSGGN--------------LTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred --hc-CcCCCEEEECCCccC--------------HHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence 22 468999998765433 456888999999999999987532 34556777889999998644
Q ss_pred EEeC
Q 043626 186 VVDY 189 (291)
Q Consensus 186 ~~~~ 189 (291)
+..+
T Consensus 154 ~~~~ 157 (187)
T PRK08287 154 CVQL 157 (187)
T ss_pred EEEE
Confidence 4333
No 49
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=1e-14 Score=132.74 Aligned_cols=98 Identities=22% Similarity=0.253 Sum_probs=82.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+.+|||||||+|..+..|+..|..|+|+|+|+.|++.++++.. .+.+...|+.. .++ +++||+|+++.+++|+.
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-ASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-ccc-cCCccEEEEcchhhhCC
Confidence 5699999999999999999999999999999999998876532 46777888743 333 67899999999999874
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
. .....++.++.++|+|||++++.
T Consensus 199 ~---------~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 199 R---------ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred H---------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 23678999999999999997664
No 50
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.59 E-value=1.5e-14 Score=126.58 Aligned_cols=123 Identities=22% Similarity=0.269 Sum_probs=97.8
Q ss_pred eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626 54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
+|||||||+|.++..+++.. ..++|+|+|+.+++.++++.. .+.++..|+... ++ +++||+|+++.+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehHHHHHh
Confidence 79999999999999998874 789999999999999988653 358888888443 44 468999999999999
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------------hHHHHHHHHHHHHcCCCCcEEEeC
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------------VAQRELILGAAMRAGFAGGVVVDY 189 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------------~~~~~~i~~~~~~aGF~~~~~~~~ 189 (291)
+.+ ...+|++++++|+|||.+++...... ......+...+.++||......+.
T Consensus 80 ~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 80 IKD-----------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred CCC-----------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 976 67999999999999999998643210 113456788899999986444443
No 51
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.59 E-value=4.6e-14 Score=111.31 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQG 106 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~ 106 (291)
..+...+++.+.+.. +.+|||||||+|..+..+++.. .+|+++|+|+.+++.++++. ..+.++..|+...
T Consensus 5 ~~~~~~~~~~~~~~~---~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T TIGR02469 5 REVRALTLSKLRLRP---GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA 81 (124)
T ss_pred HHHHHHHHHHcCCCC---CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc
Confidence 345556777777665 5699999999999999999873 68999999999999987653 3467777886443
Q ss_pred CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
.+...++||.|++.....+ ...+++.+++.|+|||.+++.++
T Consensus 82 ~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 82 LEDSLPEPDRVFIGGSGGL--------------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ChhhcCCCCEEEECCcchh--------------HHHHHHHHHHHcCCCCEEEEEec
Confidence 4444568999998755432 45889999999999999999875
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.58 E-value=4.9e-14 Score=123.17 Aligned_cols=111 Identities=23% Similarity=0.331 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhCC--CCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCC
Q 043626 33 QAKLSERALELLAL--PDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMG 104 (291)
Q Consensus 33 q~~~~~~~lelL~~--~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~ 104 (291)
...+.+.+++.+.. .. +.+|||||||+|.++..++..+..++|+|+|+.|+..|+++.. .+.+.++|+.
T Consensus 38 ~~~~~~~~~~~l~~~~~~---~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLK---GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHHhcCCCC---CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 34566777877763 33 6799999999999999999998999999999999999988653 4678888874
Q ss_pred CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
. ++ ++||+|++..+++|++. ..+..++..+.+++++++.+.+
T Consensus 115 ~-~~---~~fD~ii~~~~l~~~~~---------~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 115 S-LC---GEFDIVVCMDVLIHYPA---------SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred h-CC---CCcCEEEEhhHHHhCCH---------HHHHHHHHHHHHHhCCCEEEEE
Confidence 3 33 78999999999988732 2367889999999987765554
No 53
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.57 E-value=6.2e-14 Score=122.21 Aligned_cols=101 Identities=21% Similarity=0.238 Sum_probs=81.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhc-----------------CCcceEEEccCCCCCCCCCCcc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER-----------------EVEGDLLLGDMGQGLGLRPGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~-----------------~~~~~~~~~D~~~~~~~~~~~f 114 (291)
+.+|||+|||.|..+..|+++|+.|+|||+|+.+++.+... ...++++++|+.+.-+...+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 57999999999999999999999999999999999986331 1247889999854322224679
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
|+|+...+++|++ ......++..+.++|+|||.+++..
T Consensus 115 D~i~D~~~~~~l~---------~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 115 DAVYDRAALIALP---------EEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CEEEechhhccCC---------HHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 9999988888873 3335689999999999999866653
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.57 E-value=2.1e-14 Score=124.23 Aligned_cols=136 Identities=23% Similarity=0.240 Sum_probs=101.7
Q ss_pred HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCC--C
Q 043626 39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLG--L 109 (291)
Q Consensus 39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~--~ 109 (291)
...+++.. . ...|||||||+|.++..|++.. ..|+|+|+|+.|++.|+++. .++.++++|+...++ +
T Consensus 32 ~~~~~~~~-~---~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~ 107 (202)
T PRK00121 32 DWAELFGN-D---APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF 107 (202)
T ss_pred CHHHHcCC-C---CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc
Confidence 34455544 2 5699999999999999998763 68999999999999998753 357889999723344 6
Q ss_pred CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
.+++||+|++++..+|..... +........+++.++++|+|||.+++.+. +......+.+.+...|+..
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~---~~~~~~~~~~l~~i~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRH---HKRRLVQPEFLALYARKLKPGGEIHFATD--WEGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred CccccceEEEECCCCCCCccc---cccccCCHHHHHHHHHHcCCCCEEEEEcC--CHHHHHHHHHHHHhCcccc
Confidence 678999999987766643210 11111135789999999999999998763 4456778888888898864
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.56 E-value=1.7e-14 Score=123.01 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=83.1
Q ss_pred HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCCCCCCccc
Q 043626 40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGLRPGVVD 115 (291)
Q Consensus 40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~~~~~~fD 115 (291)
+++.+...+ +.++||||||.|..+..|+++|+.|+++|+|+..++.+.+. ...+...+.|+.+ ..+ ++.||
T Consensus 22 v~~a~~~~~---~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~-~~~-~~~yD 96 (192)
T PF03848_consen 22 VLEAVPLLK---PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND-FDF-PEEYD 96 (192)
T ss_dssp HHHHCTTS----SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC-BS--TTTEE
T ss_pred HHHHHhhcC---CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh-ccc-cCCcC
Confidence 344444444 67999999999999999999999999999999988876543 3447888999854 444 47899
Q ss_pred EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
+|+|..+++|+.- .....++..+...++|||++++..+
T Consensus 97 ~I~st~v~~fL~~---------~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 97 FIVSTVVFMFLQR---------ELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEEESSGGGS-G---------GGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEEEeccCCH---------HHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 9999999999843 2367899999999999999888543
No 56
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.56 E-value=1.1e-13 Score=121.89 Aligned_cols=101 Identities=19% Similarity=0.332 Sum_probs=84.3
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+..|||||||+|.++..+++.+..++++|+++.++..++++.. .++++..|+........+.||+|++..+++|+.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~ 128 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP 128 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC
Confidence 6799999999999999999988899999999999999887532 356777776433223457999999999999987
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
+ ...++..+.+.|+|||.+++....
T Consensus 129 ~-----------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 129 D-----------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred C-----------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 6 568899999999999999987643
No 57
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.56 E-value=6.7e-14 Score=128.27 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=102.7
Q ss_pred CCCCCCCCCcccCCchhhccccccchhH---------HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-
Q 043626 3 NRPELIAPPEIFYDDTEARKYTSSSRII---------DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN- 72 (291)
Q Consensus 3 ~~pe~~~ppe~fy~~~~a~~Y~~~~~~~---------~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~- 72 (291)
+++....|+..||++.-+.-|+.-+... .+.......+++.+ +. +..|||+|||+|..+..|++.
T Consensus 11 ~~~~k~lp~~~~yd~~G~~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~--~~---~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 11 TQSPKTLPPKYFYDARGSELFEQICELPEYYPTRTEAAILERHADEIAAAT--GA---GCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred cCCCCCCCchhcccchHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHhh--CC---CCeEEecCCCcchhHHHHHHhh
Confidence 3455678999999987776665543311 23334444444444 22 568999999999999999887
Q ss_pred --CCeEEEEeCCHHHHHHHHhcC----C--cceEEEccCCCCCCCCCC----cccEEEECCchhhhccccccCCchHHHH
Q 043626 73 --GHQWIGLDISQSMLNIALERE----V--EGDLLLGDMGQGLGLRPG----VVDGAISISAVQWLCNADKASHEPRLRL 140 (291)
Q Consensus 73 --g~~v~gvDis~~ml~~a~~~~----~--~~~~~~~D~~~~~~~~~~----~fD~Vis~~~l~~l~~~~~~~~~p~~~l 140 (291)
+..++++|+|+.||+.|.++. + .+.++++|+.+.+++... ...++++.++++++. ....
T Consensus 86 ~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~---------~~e~ 156 (301)
T TIGR03438 86 RQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT---------PEEA 156 (301)
T ss_pred ccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCC---------HHHH
Confidence 579999999999999998763 2 246689999665443332 233455556777763 2336
Q ss_pred HHHHHHHHHhccCCcEEEEEE
Q 043626 141 KAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 141 ~~~l~~l~~~LkpgG~lv~~~ 161 (291)
..+|+.++++|+|||.+++.+
T Consensus 157 ~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 157 VAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred HHHHHHHHHhcCCCCEEEEec
Confidence 799999999999999999865
No 58
>PRK04266 fibrillarin; Provisional
Probab=99.55 E-value=4.9e-13 Score=117.55 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=93.2
Q ss_pred HhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCC---CCCCCCcc
Q 043626 43 LLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE---VEGDLLLGDMGQG---LGLRPGVV 114 (291)
Q Consensus 43 lL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~---~~~~~~~f 114 (291)
.+.+.+ +.+|||+|||+|.++..|++.. ..|+|+|+++.|++.+.++. .++.++.+|+... .++ .++|
T Consensus 67 ~l~i~~---g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~ 142 (226)
T PRK04266 67 NFPIKK---GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV 142 (226)
T ss_pred hCCCCC---CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence 466665 7799999999999999999873 68999999999998665442 3578888998542 122 3569
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-------CChHHHHHHHHHHHHcCCCCcEEE
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-------ESVAQRELILGAAMRAGFAGGVVV 187 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-------~~~~~~~~i~~~~~~aGF~~~~~~ 187 (291)
|+|++.....|. ...++.+++++|||||.+++.++. ......+.....+..+||+....+
T Consensus 143 D~i~~d~~~p~~-------------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 143 DVIYQDVAQPNQ-------------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred CEEEECCCChhH-------------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999965332111 345789999999999999996432 111223345688999999975555
Q ss_pred eC
Q 043626 188 DY 189 (291)
Q Consensus 188 ~~ 189 (291)
+.
T Consensus 210 ~l 211 (226)
T PRK04266 210 DL 211 (226)
T ss_pred cC
Confidence 54
No 59
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.55 E-value=5.6e-14 Score=126.95 Aligned_cols=108 Identities=25% Similarity=0.305 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-----CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC
Q 043626 32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-----HQWIGLDISQSMLNIALEREVEGDLLLGDMGQG 106 (291)
Q Consensus 32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-----~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~ 106 (291)
++..+.+.+.+.+.. . ..+|||||||+|.++..|++.. ..++|+|+|+.|++.|.++..++.++.+|+ ..
T Consensus 70 l~~~i~~~l~~~l~~-~---~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~ 144 (272)
T PRK11088 70 LRDAVANLLAERLDE-K---ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HR 144 (272)
T ss_pred HHHHHHHHHHHhcCC-C---CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-cc
Confidence 444444444444331 2 5689999999999999988652 379999999999999999888899999998 55
Q ss_pred CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
+||.+++||+|+++.+. ..+.+++++|+|||++++...
T Consensus 145 lp~~~~sfD~I~~~~~~------------------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 145 LPFADQSLDAIIRIYAP------------------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred CCCcCCceeEEEEecCC------------------CCHHHHHhhccCCCEEEEEeC
Confidence 78989999999987542 235678999999999998764
No 60
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.54 E-value=1.7e-13 Score=119.16 Aligned_cols=133 Identities=21% Similarity=0.189 Sum_probs=91.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCCCCcccEEEECC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLRPGVVDGAISIS 121 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~~~~fD~Vis~~ 121 (291)
+..|||||||+|.++..+++.. ..|+|||+++ | ....++.++++|+.... ++..++||+|+|+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 6799999999999999998873 6899999988 3 23356889999986531 25578999999998
Q ss_pred chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK 194 (291)
Q Consensus 122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~ 194 (291)
+++|..+..............+|..++++|+|||.+++.++... ....+.. ..+..|.. +.+..|.+.+
T Consensus 126 ~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~--~~~~~l~-~l~~~f~~-v~~~Kp~ssr 194 (209)
T PRK11188 126 APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE--GFDEYLR-EIRSLFTK-VKVRKPDSSR 194 (209)
T ss_pred CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc--CHHHHHH-HHHhCceE-EEEECCcccc
Confidence 88876432100000000135789999999999999999766543 2223332 23446876 5555666644
No 61
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.54 E-value=5.6e-14 Score=119.10 Aligned_cols=100 Identities=26% Similarity=0.321 Sum_probs=81.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc---ceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE---GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~---~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~ 128 (291)
-.++||+|||.|.++..|+.++..++++|+|+.+++.|+++... +.+.+.|+.+.. ++++||+||++.+++||.+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~--P~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW--PEGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGSSS
T ss_pred cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC--CCCCeeEEEEehHhHcCCC
Confidence 46899999999999999999999999999999999999998754 899999996644 4799999999999999954
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
...+..++..+...|.|||.+|+..
T Consensus 122 --------~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 122 --------AEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp --------HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --------HHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 2337889999999999999999964
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.54 E-value=1.3e-13 Score=124.07 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=80.1
Q ss_pred CCeEEEEcCCCch----hHHHHHHc-------CCeEEEEeCCHHHHHHHHhcC---------------------------
Q 043626 52 PRLLLDIGCGSGL----SGETLSEN-------GHQWIGLDISQSMLNIALERE--------------------------- 93 (291)
Q Consensus 52 ~~~VLDiGcGsG~----~~~~L~~~-------g~~v~gvDis~~ml~~a~~~~--------------------------- 93 (291)
+.+|||+|||+|. ++..|++. +..|+|+|+|+.||+.|++..
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 5799999999996 34445443 358999999999999998753
Q ss_pred -----CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 94 -----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 94 -----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
..+.|.++|+.+ .+++.++||+|+|..+++|+.+ .....++..++++|+|||.+++..
T Consensus 180 ~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~~---------~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFDE---------PTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCCH---------HHHHHHHHHHHHHhCCCeEEEEEC
Confidence 136788889854 4556789999999999999853 225689999999999999999854
No 63
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.54 E-value=3.1e-13 Score=119.96 Aligned_cols=140 Identities=29% Similarity=0.320 Sum_probs=103.2
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL 107 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~ 107 (291)
.+.+.+++.+.. . +.+|||+|||+|.++..++.. ...++|+|+|+.+++.|+.+.. .+.++.+|+..
T Consensus 75 ~l~~~~l~~~~~-~---~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-- 148 (251)
T TIGR03534 75 ELVEAALERLKK-G---PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-- 148 (251)
T ss_pred HHHHHHHHhccc-C---CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc--
Confidence 455566665532 2 568999999999999999987 4699999999999999987642 37888999855
Q ss_pred CCCCCcccEEEECCchhhhcc-----ccccCCchHHH----------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHH
Q 043626 108 GLRPGVVDGAISISAVQWLCN-----ADKASHEPRLR----------LKAFFGSLYRCLARGARAVFQIYPESVAQRELI 172 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~-----~~~~~~~p~~~----------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i 172 (291)
++..++||+|+++..+....+ .....++|... +..++..+.++|+|||.+++.+. ..+...+
T Consensus 149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---~~~~~~~ 225 (251)
T TIGR03534 149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---YDQGEAV 225 (251)
T ss_pred cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---ccHHHHH
Confidence 345689999999855432111 11112233332 35789999999999999999873 3466778
Q ss_pred HHHHHHcCCCC
Q 043626 173 LGAAMRAGFAG 183 (291)
Q Consensus 173 ~~~~~~aGF~~ 183 (291)
.+.+.++||..
T Consensus 226 ~~~l~~~gf~~ 236 (251)
T TIGR03534 226 RALFEAAGFAD 236 (251)
T ss_pred HHHHHhCCCCc
Confidence 88899999986
No 64
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=5.2e-13 Score=120.32 Aligned_cols=141 Identities=28% Similarity=0.311 Sum_probs=102.0
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL 107 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~ 107 (291)
.+.+.++..+...+ +.+|||+|||+|.++..++... ..++|+|+|+.+++.|+++.. .+.++.+|+...+
T Consensus 95 ~l~~~~~~~~~~~~---~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~ 171 (275)
T PRK09328 95 ELVEWALEALLLKE---PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL 171 (275)
T ss_pred HHHHHHHHhccccC---CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC
Confidence 34444544443333 6799999999999999999875 899999999999999998753 4788999984433
Q ss_pred CCCCCcccEEEECCchhhh-----ccccccCCchH----------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHH
Q 043626 108 GLRPGVVDGAISISAVQWL-----CNADKASHEPR----------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELI 172 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l-----~~~~~~~~~p~----------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i 172 (291)
..++||+|+++....-. ...+...++|. ..+..++..+.++|+|||.+++.+.. .+...+
T Consensus 172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~ 246 (275)
T PRK09328 172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAV 246 (275)
T ss_pred --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHH
Confidence 35799999997432100 01111123333 33577899999999999999998743 456678
Q ss_pred HHHHHHcCCCC
Q 043626 173 LGAAMRAGFAG 183 (291)
Q Consensus 173 ~~~~~~aGF~~ 183 (291)
...+.+.||..
T Consensus 247 ~~~l~~~gf~~ 257 (275)
T PRK09328 247 RALLAAAGFAD 257 (275)
T ss_pred HHHHHhCCCce
Confidence 88888999985
No 65
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.54 E-value=4e-13 Score=115.78 Aligned_cols=130 Identities=21% Similarity=0.239 Sum_probs=98.8
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQ 105 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~ 105 (291)
++...++..+.+.+ +..|||+|||+|.++..++.. +.+++++|+++.|++.++++. .++.++.+|+.+
T Consensus 27 ~~r~~~l~~l~~~~---~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 27 EIRALALSKLRLRK---GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHcCCCC---cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 44444456666665 679999999999999888764 368999999999999887653 246788888755
Q ss_pred CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
.++...+.||.|++..... + +..++..+.++|+|||++++... ..++...+...+.+.||..
T Consensus 104 ~l~~~~~~~D~V~~~~~~~---~-----------~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 104 ILFTINEKFDRIFIGGGSE---K-----------LKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNL 165 (198)
T ss_pred hHhhcCCCCCEEEECCCcc---c-----------HHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCe
Confidence 4443357899999854221 1 56789999999999999997543 4567788889999999953
No 66
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.53 E-value=2.5e-13 Score=121.36 Aligned_cols=144 Identities=24% Similarity=0.291 Sum_probs=102.9
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCCC-
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLGL- 109 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~~- 109 (291)
.+.+.+++.+..... +.+|||+|||+|.++..++.. +..++|+|+|+.+++.|+++.. ...++.+|+.+.++.
T Consensus 72 ~Lv~~~l~~~~~~~~--~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~ 149 (251)
T TIGR03704 72 FLVDEAAALARPRSG--TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTA 149 (251)
T ss_pred HHHHHHHHhhcccCC--CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchh
Confidence 455555555432221 458999999999999999876 4689999999999999998753 257888998554431
Q ss_pred CCCcccEEEECCchhhh-----ccccccCCchHHH----------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHH
Q 043626 110 RPGVVDGAISISAVQWL-----CNADKASHEPRLR----------LKAFFGSLYRCLARGARAVFQIYPESVAQRELILG 174 (291)
Q Consensus 110 ~~~~fD~Vis~~~l~~l-----~~~~~~~~~p~~~----------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~ 174 (291)
..+.||+||++....-. ..++...++|... +..++..+.++|+|||++++.+.. .+...+..
T Consensus 150 ~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---~~~~~v~~ 226 (251)
T TIGR03704 150 LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---RQAPLAVE 226 (251)
T ss_pred cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---chHHHHHH
Confidence 13579999998543100 0112223344333 458899999999999999998843 46678888
Q ss_pred HHHHcCCCC
Q 043626 175 AAMRAGFAG 183 (291)
Q Consensus 175 ~~~~aGF~~ 183 (291)
.+.+.||..
T Consensus 227 ~l~~~g~~~ 235 (251)
T TIGR03704 227 AFARAGLIA 235 (251)
T ss_pred HHHHCCCCc
Confidence 999999987
No 67
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=1.7e-13 Score=118.86 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=85.8
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQ 105 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~ 105 (291)
.+...+++.+...+ +.+|||||||+|..+..+++. +.+|+++|+++.|++.|+++.. .+.++.+|+.+
T Consensus 59 ~~~~~~~~~l~~~~---~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 59 HMVAMMCELIEPRP---GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHhcCCCC---CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 45667788887665 679999999999999988875 3699999999999999987642 26788899865
Q ss_pred CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
.++ ..++||+|++..++++++ ..+.+.|+|||++++.+.
T Consensus 136 ~~~-~~~~fD~Ii~~~~~~~~~-----------------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 136 GLE-KHAPFDAIIVTAAASTIP-----------------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCc-cCCCccEEEEccCcchhh-----------------HHHHHhcCcCcEEEEEEc
Confidence 444 357999999998877652 257889999999998764
No 68
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.51 E-value=1.6e-13 Score=115.52 Aligned_cols=105 Identities=25% Similarity=0.340 Sum_probs=82.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcCC--eEEEEeCCHHHHHHHHhcCC----c-ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSENGH--QWIGLDISQSMLNIALEREV----E-GDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~--~v~gvDis~~ml~~a~~~~~----~-~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
..+|||+|||+|.++..++..+. .++++|+|+.+++.++++.. + +.++..|+.+.++ ++.||+|+|+..++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccchh
Confidence 56999999999999999999873 59999999999999988642 2 7788999865444 78999999997754
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~ 164 (291)
.-.+ .....+..++....+.|+|||.+++.....
T Consensus 110 ~~~~------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 110 AGGD------DGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp TTSH------CHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cccc------cchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 3221 233347899999999999999998866543
No 69
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.51 E-value=3.6e-13 Score=121.08 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=96.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHH--hcCC--cceEEE--ccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIAL--EREV--EGDLLL--GDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~--~~~~--~~~~~~--~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+.+|||||||+|..+..++..| ..|+|+|.+.-.+.... ++.. ...+.. ..+ +.+|. .+.||.|+|..||.
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccc-cCCcCEEEEeeehh
Confidence 6799999999999999999998 67999999987654422 2222 222222 233 45666 78999999999999
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE-----------cCCCh----------HHHHHHHHHHHHcCCCC
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI-----------YPESV----------AQRELILGAAMRAGFAG 183 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~-----------~~~~~----------~~~~~i~~~~~~aGF~~ 183 (291)
|..+ ....|..+..+|++||.+++.+ .|... .....+..++.++||..
T Consensus 194 Hrr~-----------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 194 HRRS-----------PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred ccCC-----------HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCce
Confidence 9987 6688999999999999999852 22211 25778999999999998
Q ss_pred cEEEeCC
Q 043626 184 GVVVDYP 190 (291)
Q Consensus 184 ~~~~~~p 190 (291)
..+++..
T Consensus 263 v~~v~~~ 269 (315)
T PF08003_consen 263 VRCVDVS 269 (315)
T ss_pred EEEecCc
Confidence 6777663
No 70
>PRK06922 hypothetical protein; Provisional
Probab=99.51 E-value=1.5e-13 Score=135.11 Aligned_cols=109 Identities=20% Similarity=0.307 Sum_probs=86.5
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCC--CCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLG--LRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l 123 (291)
+.+|||||||+|..+..++.. +..++|+|+|+.|++.|+++.. .+.++++|+.+ ++ |++++||+|++++++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~d-Lp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAIN-LSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHh-CccccCCCCEEEEEEchHH
Confidence 679999999999999888875 4799999999999999987642 35778889744 55 778999999999999
Q ss_pred hhhccccc--cCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 124 QWLCNADK--ASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 124 ~~l~~~~~--~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
||+++... ...-+...+..+|++++++|||||.+++..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 98753110 001123457899999999999999999964
No 71
>PRK06202 hypothetical protein; Provisional
Probab=99.50 E-value=1.5e-13 Score=121.21 Aligned_cols=97 Identities=19% Similarity=0.113 Sum_probs=76.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc----C--CeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSEN----G--HQWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~----g--~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
+.+|||||||+|.++..|++. | .+++|+|+|+.|++.|+++.. ++.+...+. ..+++.+++||+|+|+.++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS-DELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec-ccccccCCCccEEEECCee
Confidence 679999999999998888752 3 589999999999999988753 356666665 3456667899999999999
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
||+.+. .+..++++++++++ ++.++.
T Consensus 140 hh~~d~---------~~~~~l~~~~r~~~-~~~~i~ 165 (232)
T PRK06202 140 HHLDDA---------EVVRLLADSAALAR-RLVLHN 165 (232)
T ss_pred ecCChH---------HHHHHHHHHHHhcC-eeEEEe
Confidence 999652 25689999999998 444333
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=99.50 E-value=8.3e-13 Score=115.88 Aligned_cols=140 Identities=21% Similarity=0.159 Sum_probs=97.7
Q ss_pred HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCc
Q 043626 39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGV 113 (291)
Q Consensus 39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~ 113 (291)
.++..+.+.+ +.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++.. .+.++.+|+... +..++
T Consensus 27 ~~l~~~~~~~---~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~ 101 (223)
T PRK14967 27 DALAAEGLGP---GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRP 101 (223)
T ss_pred HHHHhcccCC---CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCC
Confidence 3344444444 5799999999999999999877 499999999999998887542 367788887543 34679
Q ss_pred ccEEEECCchhhhcccccc----------CCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 114 VDGAISISAVQWLCNADKA----------SHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 114 fD~Vis~~~l~~l~~~~~~----------~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
||+|+++..+......... ..+....+..++..++++|++||++++...... +...+...+...||.-
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGLDA 179 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCCCe
Confidence 9999998543322111000 112223367789999999999999998653322 3445677788888875
Q ss_pred cE
Q 043626 184 GV 185 (291)
Q Consensus 184 ~~ 185 (291)
..
T Consensus 180 ~~ 181 (223)
T PRK14967 180 EV 181 (223)
T ss_pred EE
Confidence 33
No 73
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.50 E-value=7e-13 Score=121.90 Aligned_cols=113 Identities=21% Similarity=0.214 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC----------cceEEEccCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV----------EGDLLLGDMG 104 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~----------~~~~~~~D~~ 104 (291)
.+.+.+++.+....+..+.+|||||||+|.++..|++.|..|+|+|+|+.|++.|+++.. .+.+...|+.
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 445666766654210016799999999999999999999999999999999999988753 2467777863
Q ss_pred CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
. + .++||+|+|..+++|+++ .....++..+.. +.+||. ++.+.
T Consensus 208 ~-l---~~~fD~Vv~~~vL~H~p~---------~~~~~ll~~l~~-l~~g~l-iIs~~ 250 (315)
T PLN02585 208 S-L---SGKYDTVTCLDVLIHYPQ---------DKADGMIAHLAS-LAEKRL-IISFA 250 (315)
T ss_pred h-c---CCCcCEEEEcCEEEecCH---------HHHHHHHHHHHh-hcCCEE-EEEeC
Confidence 2 2 578999999999988754 224466766765 445544 55543
No 74
>PRK14968 putative methyltransferase; Provisional
Probab=99.50 E-value=1.7e-12 Score=109.95 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=95.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----c--ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----E--GDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~--~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+.+|||+|||+|.++..++..+.+++|+|+|+.|++.++++.. . +.++.+|+.+. +...+||+|+++..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECCCcC
Confidence 6699999999999999999999999999999999999976531 2 67788887553 3455899999986543
Q ss_pred hhcc----------ccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 125 WLCN----------ADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 125 ~l~~----------~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
+... ...........+..+++.+.++|+|||.+++..... ...+.+..++.++||..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGEDEVLEYLEKLGFEA 168 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCHHHHHHHHHHCCCee
Confidence 2110 000111223446789999999999999998876432 23456788899999976
No 75
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.50 E-value=1.6e-14 Score=124.11 Aligned_cols=133 Identities=24% Similarity=0.363 Sum_probs=102.6
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-CCCCccc
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-LRPGVVD 115 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-~~~~~fD 115 (291)
...++..++... -.++||+|||||..+..|...-..++|||||.+|++.|.++...-.+.+.|+...++ ..+..||
T Consensus 114 l~emI~~~~~g~---F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 114 LAEMIGKADLGP---FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHhccCCc---cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 334444444333 469999999999999999999899999999999999999987655555555533333 4567899
Q ss_pred EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CC-----------hHHHHHHHHHHHHcCCC
Q 043626 116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ES-----------VAQRELILGAAMRAGFA 182 (291)
Q Consensus 116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~-----------~~~~~~i~~~~~~aGF~ 182 (291)
+|++..|+.++-+ +..+|-.+...|+|||.|.|+.-. .. ......+...+...||+
T Consensus 191 Li~AaDVl~YlG~-----------Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~ 259 (287)
T COG4976 191 LIVAADVLPYLGA-----------LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLE 259 (287)
T ss_pred chhhhhHHHhhcc-----------hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCce
Confidence 9999999999977 899999999999999999997421 11 11344677788888887
Q ss_pred C
Q 043626 183 G 183 (291)
Q Consensus 183 ~ 183 (291)
.
T Consensus 260 ~ 260 (287)
T COG4976 260 V 260 (287)
T ss_pred E
Confidence 5
No 76
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.49 E-value=8.6e-13 Score=115.28 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWL 126 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l 126 (291)
+.+|||+|||+|.++..++..+..++++|+++.+++.++.+.. .+.+...|+.+.....+++||+|++..+++|+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 6799999999999999999888889999999999999887542 36777777743222224799999999999998
Q ss_pred ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
.+ ...++..+.++|++||.+++...
T Consensus 126 ~~-----------~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 126 PD-----------PQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CC-----------HHHHHHHHHHhcCCCcEEEEEec
Confidence 76 67899999999999999998654
No 77
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.48 E-value=1.1e-12 Score=123.66 Aligned_cols=127 Identities=22% Similarity=0.239 Sum_probs=95.9
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
+.+|||||||+|.++..++.. +.+++|+|+|+.|++.|+++.. .+.++.+|+.+......++||+|+||.. +
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP--Y 329 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP--Y 329 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC--C
Confidence 459999999999999988865 4799999999999999988753 4788999985432112468999999853 4
Q ss_pred hccccc------cCCchHHH----------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 126 LCNADK------ASHEPRLR----------LKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 126 l~~~~~------~~~~p~~~----------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
++..+. ..++|... +..++..+.+.|+|||.+++.+. ..|.+.+.+.+.+.||..
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG---~~Q~e~V~~ll~~~Gf~~ 400 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG---FDQGAAVRGVLAENGFSG 400 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC---ccHHHHHHHHHHHCCCcE
Confidence 433221 11345444 35788888999999999999884 357778888888999975
No 78
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.48 E-value=1e-12 Score=119.40 Aligned_cols=124 Identities=20% Similarity=0.142 Sum_probs=92.9
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
+.+|||+|||+|.++..++.. +..++|+|+|+.+++.|+++.. .+.++.+|+.+.+ +.++||+|+|+...
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~--~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL--PGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc--CCCCccEEEECCCC
Confidence 568999999999999999987 3799999999999999988642 3678999985533 35689999998332
Q ss_pred ------hhhccccccCCchHH----------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 124 ------QWLCNADKASHEPRL----------RLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 124 ------~~l~~~~~~~~~p~~----------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
.++.. +. .++|.. .+..++..+.++|+|||++++.+.. .+ +.+...+...||..
T Consensus 200 ~~~~~~~~l~~-~~-~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~---~~-~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPA-EY-HHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN---SM-EALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCH-hh-hcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---CH-HHHHHHHHhCCCce
Confidence 11111 11 244543 2478899999999999999999853 23 46777778888754
No 79
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.48 E-value=3.6e-13 Score=120.28 Aligned_cols=113 Identities=23% Similarity=0.224 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD 130 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~ 130 (291)
+.+|||||||+|.++..++..|. .++|+|+|+.|++.|+++.....+ .+. ..++....+||+|+++...+.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~--~~~-~~~~~~~~~fD~Vvani~~~~----- 191 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV--ELN-VYLPQGDLKADVIVANILANP----- 191 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC--Cce-EEEccCCCCcCEEEEcCcHHH-----
Confidence 67999999999999998888874 599999999999999887542111 000 001111227999999754332
Q ss_pred ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 131 KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
+..++..+.++|+|||.++++... ..+...+...+.+.||..
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~--~~~~~~v~~~l~~~Gf~~ 233 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGIL--EEQADEVLEAYEEAGFTL 233 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECc--HhhHHHHHHHHHHCCCEE
Confidence 457889999999999999998543 346678888999999975
No 80
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.47 E-value=1e-12 Score=114.94 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh-c----------------CCcceEEEccCCCCCCCCCCcc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE-R----------------EVEGDLLLGDMGQGLGLRPGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~-~----------------~~~~~~~~~D~~~~~~~~~~~f 114 (291)
+.+|||+|||.|..+..|+++|+.|+|||+|+.+++.+.. + ...++++++|+.+..+...+.|
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 5699999999999999999999999999999999998643 2 1236788899855333233689
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
|+|+...+++|++ ......++..+.++|+|||.+++
T Consensus 118 d~v~D~~~~~~l~---------~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 118 DAVYDRAALIALP---------EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eEEEehHhHhhCC---------HHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999988888883 33357899999999999997554
No 81
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.47 E-value=3.1e-13 Score=116.16 Aligned_cols=125 Identities=20% Similarity=0.306 Sum_probs=92.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC--CCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL--GLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~--~~~~~~fD~Vis~~~ 122 (291)
...|||||||+|.++..++... ..++|+|+++.|++.|.++. .++.++++|+.... .+..+++|.|++++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 4599999999999999999874 79999999999999987653 35788999984422 144569999999887
Q ss_pred hhhhccccccCCchH-HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC-CC
Q 043626 123 VQWLCNADKASHEPR-LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG-FA 182 (291)
Q Consensus 123 l~~l~~~~~~~~~p~-~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG-F~ 182 (291)
..|... .|+.. .....++..++++|+|||.+++.+. +....+.+.+.+...+ |.
T Consensus 97 dpw~k~----~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td--~~~~~~~~~~~~~~~~~f~ 152 (194)
T TIGR00091 97 DPWPKK----RHNKRRITQPHFLKEYANVLKKGGVIHFKTD--NEPLFEDMLKVLSENDLFE 152 (194)
T ss_pred CcCCCC----CccccccCCHHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHHHhCCCeE
Confidence 776432 11111 1125799999999999999999873 3334555666666655 44
No 82
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.47 E-value=1e-12 Score=119.79 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=92.0
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGL 107 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~ 107 (291)
.+...+++.+.. + +.+|||+|||+|.++..++..| ..++|+|+|+.|++.|+++... +.+...+. .
T Consensus 147 ~l~l~~l~~~~~-~---g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~---~ 219 (288)
T TIGR00406 147 SLCLEWLEDLDL-K---DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL---E 219 (288)
T ss_pred HHHHHHHHhhcC-C---CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc---c
Confidence 444444444433 2 5799999999999999998887 5899999999999999886531 33444442 2
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
++..++||+|+++...++ +..++..+.++|+|||.++++... ..+...+...+.+. |..
T Consensus 220 ~~~~~~fDlVvan~~~~~--------------l~~ll~~~~~~LkpgG~li~sgi~--~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 220 QPIEGKADVIVANILAEV--------------IKELYPQFSRLVKPGGWLILSGIL--ETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred cccCCCceEEEEecCHHH--------------HHHHHHHHHHHcCCCcEEEEEeCc--HhHHHHHHHHHHcc-Cce
Confidence 334679999999866543 457899999999999999997653 34667777777665 754
No 83
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.47 E-value=9.7e-13 Score=112.92 Aligned_cols=89 Identities=22% Similarity=0.330 Sum_probs=73.4
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-CCCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-GLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+.+|||||||+|.++..+++. +..++|+|+|+.|++.+..+ .+.++.+|+.+.+ ++.+++||+|+++.+++|+.+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d- 90 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN- 90 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC-
Confidence 569999999999999999765 46789999999999998764 3678888885544 466789999999999999976
Q ss_pred cccCCchHHHHHHHHHHHHHhccC
Q 043626 130 DKASHEPRLRLKAFFGSLYRCLAR 153 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~~l~~~Lkp 153 (291)
...+++++.+.+++
T Consensus 91 ----------~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 91 ----------PEEILDEMLRVGRH 104 (194)
T ss_pred ----------HHHHHHHHHHhCCe
Confidence 56778888777654
No 84
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.47 E-value=1.4e-12 Score=114.27 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCC---CCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCC
Q 043626 35 KLSERALELLAL---PDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQ 105 (291)
Q Consensus 35 ~~~~~~lelL~~---~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~ 105 (291)
.+.+.+++.+.. .+ +.+|||||||+|.++..|++.+..++|+|+|+.|++.|+++.. .+.+..+|+
T Consensus 47 ~~~~~~~~~l~~~~~~~---~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-- 121 (230)
T PRK07580 47 RMRDTVLSWLPADGDLT---GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL-- 121 (230)
T ss_pred HHHHHHHHHHHhcCCCC---CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc--
Confidence 445556666643 33 6799999999999999999999889999999999999988643 357777774
Q ss_pred CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEE
Q 043626 106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARA 157 (291)
Q Consensus 106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~l 157 (291)
+...++||+|++..+++|+++ ..+..++..+.+.+++++.+
T Consensus 122 --~~~~~~fD~v~~~~~l~~~~~---------~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 122 --ESLLGRFDTVVCLDVLIHYPQ---------EDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred --hhccCCcCEEEEcchhhcCCH---------HHHHHHHHHHHhhcCCeEEE
Confidence 233578999999999988743 23678888888877544443
No 85
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.47 E-value=5.4e-13 Score=116.39 Aligned_cols=108 Identities=22% Similarity=0.191 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC---eEEEEeCCHHHHHHHHhcC-----CcceEEEccCCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH---QWIGLDISQSMLNIALERE-----VEGDLLLGDMGQ 105 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~---~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~ 105 (291)
..+...+++++.+.+ +.+|||||||+|.++..|++... +|+++|+++.+++.|+++. .++.++++|+..
T Consensus 63 p~~~~~~~~~l~~~~---~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 63 PHMVAMMTELLELKP---GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHHhCCCC---cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 345677888888766 78999999999999999998753 5999999999999998764 247889999855
Q ss_pred CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
..+ ...+||+|++..+..++ ...+.+.|+|||++++.+.
T Consensus 140 ~~~-~~~~fD~Ii~~~~~~~~-----------------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 140 GWE-PLAPYDRIYVTAAGPKI-----------------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred CCc-ccCCCCEEEEcCCcccc-----------------cHHHHHhcCcCcEEEEEEc
Confidence 433 34689999988666544 2357889999999999763
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.46 E-value=2.1e-12 Score=119.80 Aligned_cols=136 Identities=19% Similarity=0.079 Sum_probs=101.2
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGL 109 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~ 109 (291)
.++..++++...++ +..|||+|||+|.++..++..+..++|+|+++.|+..|+.+.. ++.++.+|+. .+++
T Consensus 169 ~la~~~~~l~~~~~---g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~ 244 (329)
T TIGR01177 169 KLARAMVNLARVTE---GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPL 244 (329)
T ss_pred HHHHHHHHHhCCCC---cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCc
Confidence 45566666666655 6799999999999998888888999999999999999887642 3578899984 4777
Q ss_pred CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626 110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181 (291)
Q Consensus 110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF 181 (291)
..++||+|+++..+..-. ....+....-...++..+.++|+|||++++.+.... .+...+..+||
T Consensus 245 ~~~~~D~Iv~dPPyg~~~--~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~ 309 (329)
T TIGR01177 245 SSESVDAIATDPPYGRST--TAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR 309 (329)
T ss_pred ccCCCCEEEECCCCcCcc--cccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc
Confidence 778999999985442210 001112223357899999999999999998874432 33456888999
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.46 E-value=7.8e-13 Score=115.26 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV-----EGDLLLGDMG 104 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~ 104 (291)
+..+...+++.+.+.+ +.+|||||||+|.++..+++.. .+++++|+++.+++.|+++.. ++.++.+|..
T Consensus 61 ~p~~~~~~~~~l~~~~---g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 61 AIHMVAIMCELLDLKE---GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT 137 (212)
T ss_pred cHHHHHHHHHHcCCCC---cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence 4467778888888776 7899999999999999988763 699999999999999988652 4789999985
Q ss_pred CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
... ...++||+|++..+++++ ...+.+.|+|||++++...
T Consensus 138 ~~~-~~~~~fD~I~~~~~~~~~-----------------~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 138 LGY-EENAPYDRIYVTAAGPDI-----------------PKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred cCC-CcCCCcCEEEECCCcccc-----------------hHHHHHhhCCCcEEEEEEc
Confidence 443 345789999988766543 2346778999999999763
No 88
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.45 E-value=1.3e-12 Score=122.76 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=87.3
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC--------cceEEEccCCCC
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV--------EGDLLLGDMGQG 106 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~--------~~~~~~~D~~~~ 106 (291)
++.+++.|.... ..+|||||||+|.++..++..+ .+|+++|+|+.|++.|+++.. .+.++..|+...
T Consensus 217 trllL~~lp~~~---~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPENL---EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCccc---CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 344666665443 4599999999999999999874 799999999999999997641 357777887443
Q ss_pred CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
+.+++||+|+|+..+|+... ........+|..++++|+|||.+++..
T Consensus 294 --~~~~~fDlIlsNPPfh~~~~------~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 294 --VEPFRFNAVLCNPPFHQQHA------LTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred --CCCCCEEEEEECcCcccCcc------CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33568999999988875421 111225689999999999999999986
No 89
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.44 E-value=2.4e-12 Score=109.95 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=81.2
Q ss_pred CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCCCCcccEEEECC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLRPGVVDGAISIS 121 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~~~~fD~Vis~~ 121 (291)
+..|||||||+|.++..++... ..++++|+|+.+ ...++.++++|+.+.. .+..++||+|+++.
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 6799999999999999888763 479999999965 2345778888875421 13467899999975
Q ss_pred chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
+.+..................++..++++|+|||++++..+.. .....+...+... |..
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~--~~~~~~l~~l~~~-~~~ 165 (188)
T TIGR00438 107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG--EEIDEYLNELRKL-FEK 165 (188)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC--ccHHHHHHHHHhh-hce
Confidence 4321000000001111224688999999999999999976442 2334455554443 654
No 90
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.44 E-value=1.5e-12 Score=113.31 Aligned_cols=109 Identities=22% Similarity=0.191 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~ 107 (291)
+..+...+++++.+.+ +.+|||||||+|.++..|+..+.+++++|+++.+++.|+++.. ++.++.+|..+.+
T Consensus 63 ~p~~~~~l~~~l~~~~---~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 63 QPYMVARMTELLELKP---GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW 139 (212)
T ss_pred cHHHHHHHHHhcCCCC---CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence 3456677788887765 6899999999999999888887799999999999999987642 4788889875543
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
+ ..++||+|++..+++++ ...+.+.|+|||++++.+.
T Consensus 140 ~-~~~~fD~I~~~~~~~~~-----------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 P-AYAPFDRILVTAAAPEI-----------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred C-cCCCcCEEEEccCchhh-----------------hHHHHHhcCCCcEEEEEEc
Confidence 3 24789999998766554 2356789999999999875
No 91
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.44 E-value=6.1e-12 Score=108.14 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQ 105 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~ 105 (291)
+......+++.+...+ +.+|||+|||+|.++..++.. +..++++|+|+.|++.++++. .++.++.+|+..
T Consensus 25 ~~~v~~~l~~~l~~~~---~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 25 KREVRLLLISQLRLEP---DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHHHHHHHHhcCCCC---CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 4455556777776655 679999999999999988865 479999999999999998764 246788888744
Q ss_pred CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
.++.....+|.++.... .+ +..++..+++.|+|||++++.... .+....+.+.+...+..+
T Consensus 102 ~~~~~~~~~d~v~~~~~----~~-----------~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~~~~~ 162 (196)
T PRK07402 102 CLAQLAPAPDRVCIEGG----RP-----------IKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQLQARN 162 (196)
T ss_pred HHhhCCCCCCEEEEECC----cC-----------HHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhcCCCC
Confidence 33322334676654211 11 568899999999999999998743 345555666666655544
No 92
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.43 E-value=4.2e-12 Score=115.43 Aligned_cols=140 Identities=21% Similarity=0.206 Sum_probs=99.4
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQG 106 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~ 106 (291)
.+.+.+++.+....+ ..+|||+|||+|.++..++... ..++|+|+|+.+++.|+++.. .+.++.+|+.+.
T Consensus 100 ~lv~~~l~~~~~~~~--~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~ 177 (284)
T TIGR00536 100 ELVEKALASLISQNP--ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP 177 (284)
T ss_pred HHHHHHHHHhhhcCC--CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc
Confidence 445555554422221 3689999999999999999874 699999999999999998642 278899998553
Q ss_pred CCCCCCcccEEEECCchhhhccc------cccCCchHH----------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHH
Q 043626 107 LGLRPGVVDGAISISAVQWLCNA------DKASHEPRL----------RLKAFFGSLYRCLARGARAVFQIYPESVAQRE 170 (291)
Q Consensus 107 ~~~~~~~fD~Vis~~~l~~l~~~------~~~~~~p~~----------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~ 170 (291)
+...+||+|||+.. +++.. ....++|.. .+..++..+.+.|+|||.+++.+.. .|..
T Consensus 178 --~~~~~fDlIvsNPP--yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~---~q~~ 250 (284)
T TIGR00536 178 --LAGQKIDIIVSNPP--YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN---WQQK 250 (284)
T ss_pred --CcCCCccEEEECCC--CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc---cHHH
Confidence 33458999999833 22221 122345543 3578899999999999999999854 4555
Q ss_pred HHHHHHH-HcCCCC
Q 043626 171 LILGAAM-RAGFAG 183 (291)
Q Consensus 171 ~i~~~~~-~aGF~~ 183 (291)
.+.+.+. ..||..
T Consensus 251 ~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 251 SLKELLRIKFTWYD 264 (284)
T ss_pred HHHHHHHhcCCCce
Confidence 6666666 467864
No 93
>PTZ00146 fibrillarin; Provisional
Probab=99.43 E-value=6.3e-12 Score=113.53 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=97.0
Q ss_pred HHHHHHHHHHH---HHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHH----HHHHHHhcCCcceEEE
Q 043626 31 DIQAKLSERAL---ELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQS----MLNIALEREVEGDLLL 100 (291)
Q Consensus 31 ~iq~~~~~~~l---elL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~----ml~~a~~~~~~~~~~~ 100 (291)
..++.++..++ +.+.+.+ +.+|||+|||+|.++..+++.. ..|++||+|+. |++.+..+ .++.++.
T Consensus 112 p~rSKlaa~i~~g~~~l~Ikp---G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~ 187 (293)
T PTZ00146 112 PFRSKLAAAIIGGVANIPIKP---GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPII 187 (293)
T ss_pred CcccHHHHHHHCCcceeccCC---CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEE
Confidence 34556666664 3344554 6799999999999999999873 68999999986 45555443 5678889
Q ss_pred ccCCCC--CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC------hHH-HHH
Q 043626 101 GDMGQG--LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES------VAQ-REL 171 (291)
Q Consensus 101 ~D~~~~--~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~------~~~-~~~ 171 (291)
.|+... +.+..++||+|++..+. ++ ....++.++.++|||||.+++.+-... +++ ...
T Consensus 188 ~Da~~p~~y~~~~~~vDvV~~Dva~---pd----------q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ 254 (293)
T PTZ00146 188 EDARYPQKYRMLVPMVDVIFADVAQ---PD----------QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFAS 254 (293)
T ss_pred CCccChhhhhcccCCCCEEEEeCCC---cc----------hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHH
Confidence 997542 22234689999987642 11 144666789999999999999543211 111 122
Q ss_pred HHHHHHHcCCCCcEEEeC
Q 043626 172 ILGAAMRAGFAGGVVVDY 189 (291)
Q Consensus 172 i~~~~~~aGF~~~~~~~~ 189 (291)
-.+++.++||.....++.
T Consensus 255 ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 255 EVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred HHHHHHHcCCceEEEEec
Confidence 137789999997555555
No 94
>PHA03411 putative methyltransferase; Provisional
Probab=99.43 E-value=1.8e-12 Score=115.88 Aligned_cols=129 Identities=13% Similarity=0.074 Sum_probs=98.2
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
..+|||+|||+|.++..++.+ +.+|+|+|+|+.|++.++++..++.++++|+.+.. ...+||+||++..+.++...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE--SNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--ccCCCcEEEEcCCccccCch
Confidence 469999999999999888775 47999999999999999998888899999985432 25689999999999886543
Q ss_pred cccCCchH-------HH--HHHHHHHHHHhccCCcEEEEEEcCCC----hHHHHHHHHHHHHcCCC
Q 043626 130 DKASHEPR-------LR--LKAFFGSLYRCLARGARAVFQIYPES----VAQRELILGAAMRAGFA 182 (291)
Q Consensus 130 ~~~~~~p~-------~~--l~~~l~~l~~~LkpgG~lv~~~~~~~----~~~~~~i~~~~~~aGF~ 182 (291)
+....-.. +. +..++.....+|+|+|.+.+.+.... .-.......++...||.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 32221111 11 46888999999999998887643222 22355677888899986
No 95
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.42 E-value=9.9e-13 Score=113.98 Aligned_cols=98 Identities=27% Similarity=0.434 Sum_probs=79.7
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcc------eEEEccCCCCCCCC--CCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEG------DLLLGDMGQGLGLR--PGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~------~~~~~D~~~~~~~~--~~~fD~Vis~~~l 123 (291)
...++|+|||+|..+..++++..+|+|+|+|+.||++|.+..+.. .+...++ .++. +++.|+|+|.-++
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~---v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM---VDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCcccccccc---ccccCCCcceeeehhhhhH
Confidence 348999999999999999999999999999999999998876542 2222222 3333 7899999999999
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCc-EEEEEEcCC
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGA-RAVFQIYPE 164 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG-~lv~~~~~~ 164 (291)
||+. +.+|++.++++|++.| .+.+..|..
T Consensus 111 HWFd------------le~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 111 HWFD------------LERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred Hhhc------------hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 9974 6899999999999866 777777764
No 96
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.3e-12 Score=116.54 Aligned_cols=131 Identities=25% Similarity=0.282 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc--ceE-EEccCCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE--GDL-LLGDMGQGLG 108 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~--~~~-~~~D~~~~~~ 108 (291)
...|+-.+++.+..+ +.+|||+|||||.++...++.| ..++|+|++|-+++.|++|... +.. ...-......
T Consensus 148 TT~lcL~~Le~~~~~----g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~ 223 (300)
T COG2264 148 TTSLCLEALEKLLKK----GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE 223 (300)
T ss_pred hHHHHHHHHHHhhcC----CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh
Confidence 346666777766553 6799999999999999999999 5799999999999999987532 221 1111111122
Q ss_pred CCC-CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 109 LRP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 109 ~~~-~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
... ++||+||+|= |-.+ +..+...+++.|+|||+++++=.- .++.+.+.+.+.++||.-
T Consensus 224 ~~~~~~~DvIVANI-LA~v-------------l~~La~~~~~~lkpgg~lIlSGIl--~~q~~~V~~a~~~~gf~v 283 (300)
T COG2264 224 VPENGPFDVIVANI-LAEV-------------LVELAPDIKRLLKPGGRLILSGIL--EDQAESVAEAYEQAGFEV 283 (300)
T ss_pred hcccCcccEEEehh-hHHH-------------HHHHHHHHHHHcCCCceEEEEeeh--HhHHHHHHHHHHhCCCeE
Confidence 233 5999999983 3222 668899999999999999997533 357888999999999975
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.42 E-value=2.2e-12 Score=120.05 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=87.5
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCC
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLR 110 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~ 110 (291)
++.+++.|.... ..+|||||||+|.++..+++.+ ..|+++|+|+.|++.|+++.. ...++..|+... .
T Consensus 185 t~lLl~~l~~~~---~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~ 258 (342)
T PRK09489 185 SQLLLSTLTPHT---KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---I 258 (342)
T ss_pred HHHHHHhccccC---CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---c
Confidence 345566655433 4589999999999999999875 589999999999999987542 356777776432 2
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
.++||+|||+..+|+..+. .......++..+.+.|+|||.+++...
T Consensus 259 ~~~fDlIvsNPPFH~g~~~------~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQT------SLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccc------cHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 5789999999998864321 122367899999999999999998763
No 98
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=8.5e-12 Score=113.11 Aligned_cols=120 Identities=27% Similarity=0.349 Sum_probs=93.1
Q ss_pred eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626 54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQGLGLRPGVVDGAISISAVQWL 126 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l 126 (291)
+|||||||||.++..++..+ ..|+|+|||+.+++.|++|... +.++..|+...+ .++||+|||| ..|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsN--PPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---RGKFDLIVSN--PPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---CCceeEEEeC--CCCC
Confidence 79999999999999999987 4999999999999999887643 244555653333 3499999999 5566
Q ss_pred cccc------ccCCchHHH----------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626 127 CNAD------KASHEPRLR----------LKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181 (291)
Q Consensus 127 ~~~~------~~~~~p~~~----------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF 181 (291)
+..+ ...++|... ..+++..+.+.|+|||.+++... ..+.+.+.+.+.+.||
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---LTQGEAVKALFEDTGF 255 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---CCcHHHHHHHHHhcCC
Confidence 6541 112455444 48889999999999999999983 4567788889999995
No 99
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.41 E-value=6.8e-12 Score=115.16 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=84.4
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG 108 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~ 108 (291)
...+++.+.+.+ ..+|||||||+|.++..+++.+ .+++++|+ +.+++.++++.. .+.++.+|+.+ .+
T Consensus 138 ~~~l~~~~~~~~---~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~-~~ 212 (306)
T TIGR02716 138 IQLLLEEAKLDG---VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK-ES 212 (306)
T ss_pred HHHHHHHcCCCC---CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC-CC
Confidence 455666666655 6799999999999999999885 78999998 789998877542 26789999854 23
Q ss_pred CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
++ .+|+|++..++|++.+ .....+|+++++.|+|||++++.
T Consensus 213 ~~--~~D~v~~~~~lh~~~~---------~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 213 YP--EADAVLFCRILYSANE---------QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CC--CCCEEEeEhhhhcCCh---------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 32 4799998888886633 22568999999999999999885
No 100
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.40 E-value=7.1e-12 Score=122.42 Aligned_cols=125 Identities=16% Similarity=0.219 Sum_probs=94.7
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
+.+|||||||+|.++..++.. +..++|+|+|+.+++.|+++.. .+.++.+|+.+.+ ..++||+|||+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--~~~~fDlIvsNPP- 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--EKQKFDFIVSNPP- 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC--cCCCccEEEECCC-
Confidence 468999999999999988865 4799999999999999998742 3678888874433 3568999999843
Q ss_pred hhhcccc-------ccCCchHH----------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 124 QWLCNAD-------KASHEPRL----------RLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 124 ~~l~~~~-------~~~~~p~~----------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
++...+ ...++|.. .+..++..+.++|+|||.+++.+. ..+.+.+.+.+.+.||..
T Consensus 216 -Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---~~q~~~v~~~~~~~g~~~ 288 (506)
T PRK01544 216 -YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---FKQEEAVTQIFLDHGYNI 288 (506)
T ss_pred -CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---CchHHHHHHHHHhcCCCc
Confidence 332211 22244443 346788899999999999999874 347778888888899975
No 101
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.40 E-value=1.3e-12 Score=112.33 Aligned_cols=145 Identities=23% Similarity=0.315 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHh-CCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC-C--cceEEEccCCCCC
Q 043626 33 QAKLSERALELL-ALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE-V--EGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL-~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~-~--~~~~~~~D~~~~~ 107 (291)
..++..++++.+ ..++. ...++|||||-|.+...|...+ ..++-+|.|..|++.++... + ....+.+|- +.+
T Consensus 55 keeig~rlaDrvfD~kk~--fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DE-E~L 131 (325)
T KOG2940|consen 55 KEEIGDRLADRVFDCKKS--FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDE-EFL 131 (325)
T ss_pred HHHHHHHHHHHHHHHhhh--CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecch-hcc
Confidence 334444555444 22331 4489999999999999999887 78999999999999998753 2 346677884 778
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-----------------------
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE----------------------- 164 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~----------------------- 164 (291)
+|..+++|+||++..+||+.+ +...+..+...|||+|.|+..+.+.
T Consensus 132 df~ens~DLiisSlslHW~Nd-----------LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSp 200 (325)
T KOG2940|consen 132 DFKENSVDLIISSLSLHWTND-----------LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISP 200 (325)
T ss_pred cccccchhhhhhhhhhhhhcc-----------CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCC
Confidence 999999999999999999988 7889999999999999998743222
Q ss_pred ---ChHHHHHHHHHHHHcCCCC------cEEEeCCC
Q 043626 165 ---SVAQRELILGAAMRAGFAG------GVVVDYPH 191 (291)
Q Consensus 165 ---~~~~~~~i~~~~~~aGF~~------~~~~~~p~ 191 (291)
...+...+-.++.++||.- .+++.||.
T Consensus 201 hiSPf~qvrDiG~LL~rAGF~m~tvDtDEi~v~Yp~ 236 (325)
T KOG2940|consen 201 HISPFTQVRDIGNLLTRAGFSMLTVDTDEIVVGYPR 236 (325)
T ss_pred CcChhhhhhhhhhHHhhcCcccceecccceeecCch
Confidence 2236778888999999973 45566664
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=9.7e-13 Score=103.12 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=80.7
Q ss_pred CeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC-CCCCCcccEEEECCchh
Q 043626 53 RLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL-GLRPGVVDGAISISAVQ 124 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~ 124 (291)
.+|||+|||+|.++..+++.+ .+++|+|+++..++.++.+.. .++++.+|+.... .+..++||+|+++..+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 489999999999999999998 999999999999999998763 3689999984433 36689999999996654
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
...... .........++..+.++|+|||.+++.+
T Consensus 82 ~~~~~~---~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 82 PRSGDK---AALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp SBTT-------GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccc---hhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 221110 1111136789999999999999999875
No 103
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.37 E-value=2.8e-12 Score=108.50 Aligned_cols=94 Identities=22% Similarity=0.359 Sum_probs=79.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-CCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+.+|||+|||.|.+...|.+. +...+|+|++++.+..|.++. +.++++|+.++++ |++++||.||++.+||++.+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~- 90 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--VSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR- 90 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--CCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence 679999999999999999874 789999999999999988876 4589999988875 88999999999999999966
Q ss_pred cccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
+..++.++ |+-|..++++|
T Consensus 91 ----------P~~vL~Em---lRVgr~~IVsF 109 (193)
T PF07021_consen 91 ----------PDEVLEEM---LRVGRRAIVSF 109 (193)
T ss_pred ----------HHHHHHHH---HHhcCeEEEEe
Confidence 45666665 45566777776
No 104
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.36 E-value=5.1e-11 Score=100.28 Aligned_cols=127 Identities=18% Similarity=0.186 Sum_probs=102.8
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL 107 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~ 107 (291)
++..-.+..|.+.+ ++.++|||||||..+..++..+ .+++++|-++.+++...+|.. ++.++.+|..+.+
T Consensus 21 EIRal~ls~L~~~~---g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 21 EIRALTLSKLRPRP---GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHhhCCCC---CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 55556677777776 7899999999999999999544 899999999999998887653 4788999987766
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA 182 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~ 182 (291)
+-.+ +||.|+....- . +..+|+.+...|+|||++|+... ..+....+.+++.+.||.
T Consensus 98 ~~~~-~~daiFIGGg~-~--------------i~~ile~~~~~l~~ggrlV~nai--tlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 98 PDLP-SPDAIFIGGGG-N--------------IEEILEAAWERLKPGGRLVANAI--TLETLAKALEALEQLGGR 154 (187)
T ss_pred cCCC-CCCEEEECCCC-C--------------HHHHHHHHHHHcCcCCeEEEEee--cHHHHHHHHHHHHHcCCc
Confidence 5323 89999987652 1 67899999999999999999864 345667788889999995
No 105
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.36 E-value=3.3e-12 Score=106.32 Aligned_cols=142 Identities=17% Similarity=0.246 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhC---CCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEE
Q 043626 32 IQAKLSERALELLA---LPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLL 100 (291)
Q Consensus 32 iq~~~~~~~lelL~---~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~ 100 (291)
.+..++..+++... ..+. ..+|||+|||+|.+...|++.| ...+|+|.|+.+++.|+.... .+.|.+
T Consensus 47 ae~riv~wl~d~~~~~rv~~~--A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQ--ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred HHHHHHHHHHhhhhhhhhccc--ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 45566666666654 3331 3499999999999999999987 569999999999999875432 289999
Q ss_pred ccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcC
Q 043626 101 GDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAG 180 (291)
Q Consensus 101 ~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aG 180 (291)
.|+.++ .+..+.||+|+--.++..+.-. ...|..++...+..+.++|+|||++++.-... ...++.+.+...|
T Consensus 125 ~DI~~~-~~~~~qfdlvlDKGT~DAisLs---~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~---T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 125 LDITDP-DFLSGQFDLVLDKGTLDAISLS---PDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF---TKDELVEEFENFN 197 (227)
T ss_pred eeccCC-cccccceeEEeecCceeeeecC---CCCcccceeeehhhHhhccCCCcEEEEEecCc---cHHHHHHHHhcCC
Confidence 999765 6778999999988777655321 12455556778899999999999999976433 3445666766666
Q ss_pred CC
Q 043626 181 FA 182 (291)
Q Consensus 181 F~ 182 (291)
|.
T Consensus 198 f~ 199 (227)
T KOG1271|consen 198 FE 199 (227)
T ss_pred eE
Confidence 64
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.36 E-value=8.6e-12 Score=116.93 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=91.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC-CCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL-GLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~-~~~~~~fD~Vis~~~l 123 (291)
...+||||||+|.++..++... ..++|+|+++.|+..|.++. .++.++.+|+...+ .++++++|.|++++..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 4589999999999999999874 79999999999998887653 35788999974322 4678999999999887
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHc
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRA 179 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~a 179 (291)
.|... .| -+.....++..++++|+|||.+.+.+-. ....+.....+.+.
T Consensus 203 PW~Kk----rH-RRlv~~~fL~e~~RvLkpGG~l~l~TD~--~~y~~~~~e~~~~~ 251 (390)
T PRK14121 203 PWDKK----PH-RRVISEDFLNEALRVLKPGGTLELRTDS--ELYFEFSLELFLKL 251 (390)
T ss_pred Ccccc----ch-hhccHHHHHHHHHHHcCCCcEEEEEEEC--HHHHHHHHHHHHhC
Confidence 77432 12 1112378999999999999999998732 23344444555544
No 107
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=2.4e-11 Score=111.58 Aligned_cols=122 Identities=19% Similarity=0.103 Sum_probs=88.9
Q ss_pred CeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch-
Q 043626 53 RLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV- 123 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l- 123 (291)
.+|||+|||+|.++..++... ..++|+|+|+.+++.|+++.. .+.++++|+.+.+ +.++||+|+|+...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l--~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL--PGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC--CCCCccEEEECCCCC
Confidence 689999999999999999873 799999999999999988742 3788999985544 35689999998322
Q ss_pred -----hhhccccccCCchH----------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626 124 -----QWLCNADKASHEPR----------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA 182 (291)
Q Consensus 124 -----~~l~~~~~~~~~p~----------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~ 182 (291)
..+.. +. .++|. .-...++..+.++|+|||.+++.+... +. .+...+...||.
T Consensus 213 ~~~~~~~l~~-~~-~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~---~~-~~~~~~~~~~~~ 280 (307)
T PRK11805 213 DAEDMADLPA-EY-RHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS---RV-HLEEAYPDVPFT 280 (307)
T ss_pred CccchhhcCH-hh-ccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC---HH-HHHHHHhhCCCE
Confidence 11110 01 13333 335788999999999999999988543 22 356666666653
No 108
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.34 E-value=9.4e-12 Score=113.21 Aligned_cols=127 Identities=22% Similarity=0.295 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~ 107 (291)
...|+-.+++.+..+ +.+|||+|||||.++...+..| .+|+|+|+++.+++.|++|.. ...+..... .
T Consensus 147 TT~lcl~~l~~~~~~----g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~-~-- 219 (295)
T PF06325_consen 147 TTRLCLELLEKYVKP----GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS-E-- 219 (295)
T ss_dssp HHHHHHHHHHHHSST----TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT-S--
T ss_pred HHHHHHHHHHHhccC----CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe-c--
Confidence 446666667666443 5699999999999999999999 689999999999999988753 223433221 1
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
....+.||+|++|-...- +..++..+.++|+|||.++++=.-. .+...+.+.+.+ ||..
T Consensus 220 ~~~~~~~dlvvANI~~~v--------------L~~l~~~~~~~l~~~G~lIlSGIl~--~~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 220 DLVEGKFDLVVANILADV--------------LLELAPDIASLLKPGGYLILSGILE--EQEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp CTCCS-EEEEEEES-HHH--------------HHHHHHHCHHHEEEEEEEEEEEEEG--GGHHHHHHHHHT-TEEE
T ss_pred ccccccCCEEEECCCHHH--------------HHHHHHHHHHhhCCCCEEEEccccH--HHHHHHHHHHHC-CCEE
Confidence 222489999999844432 5678889999999999999974433 466777888765 8864
No 109
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.7e-12 Score=106.74 Aligned_cols=108 Identities=22% Similarity=0.260 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLG 108 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~ 108 (291)
..|..+++++|.+.+ +.+|||||||||..+..|++...+|+.+|+.+...+.|++++. ++.+.++|-..+++
T Consensus 58 P~~vA~m~~~L~~~~---g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 58 PHMVARMLQLLELKP---GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred cHHHHHHHHHhCCCC---CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 467888999999988 8899999999999999999998899999999999999988753 47889999877665
Q ss_pred CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
..++||.|+...+...++. .+..-|++||++++-..
T Consensus 135 -~~aPyD~I~Vtaaa~~vP~-----------------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 -EEAPYDRIIVTAAAPEVPE-----------------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -CCCCcCEEEEeeccCCCCH-----------------HHHHhcccCCEEEEEEc
Confidence 2479999999888776643 46788999999999875
No 110
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.34 E-value=5.7e-12 Score=106.88 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=80.7
Q ss_pred CCeEEEEcCCCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCc-----ce-EEEccCCCCCC-CCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSE-NGHQWIGLDISQSMLNIALEREVE-----GD-LLLGDMGQGLG-LRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~-----~~-~~~~D~~~~~~-~~~~~fD~Vis~~~l 123 (291)
...||+||||||..-...-. .+..|+++|.++.|-+.|.+...+ +. |+.++. +.+| ++++++|.||+..+|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g-e~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG-ENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech-hcCcccccCCeeeEEEEEEE
Confidence 45789999999998877764 478999999999999988765533 44 788886 5566 789999999999888
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
-...+ ....|.++.++|+|||+++|.-+
T Consensus 156 CSve~-----------~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 156 CSVED-----------PVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred eccCC-----------HHHHHHHHHHhcCCCcEEEEEec
Confidence 65544 56789999999999999998643
No 111
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.34 E-value=1.7e-11 Score=113.41 Aligned_cols=103 Identities=19% Similarity=0.259 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC---------------cceEEEccCCCC-----CCCC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV---------------EGDLLLGDMGQG-----LGLR 110 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~---------------~~~~~~~D~~~~-----~~~~ 110 (291)
+..|||||||-|.-..-+...+ ..++|+|||...|+.|+++.. ...++.+|.... ++..
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~ 142 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPR 142 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSST
T ss_pred CCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcccc
Confidence 6799999999999887777776 899999999999999999871 146677776432 2222
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
...||+|-|.+++||... .......+|.++..+|+|||+++.++
T Consensus 143 ~~~FDvVScQFalHY~Fe-------se~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFE-------SEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp TS-EEEEEEES-GGGGGS-------SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCcceeehHHHHHHhcC-------CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 359999999999999855 55568899999999999999999988
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=5.1e-11 Score=114.34 Aligned_cols=129 Identities=18% Similarity=0.199 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCC
Q 043626 32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQ 105 (291)
Q Consensus 32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~ 105 (291)
+|...+..++..|...+ +.+|||+|||+|..+..+++.+ ..++++|+|+.|++.++++.. .+.++++|+..
T Consensus 228 iQd~~s~~~~~~l~~~~---g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~ 304 (427)
T PRK10901 228 VQDAAAQLAATLLAPQN---GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARD 304 (427)
T ss_pred EECHHHHHHHHHcCCCC---CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCccc
Confidence 45555666777777665 7799999999999999999875 599999999999999987753 35788899854
Q ss_pred CCC-CCCCcccEEEECCchh---hh-ccccccC-CchH------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 106 GLG-LRPGVVDGAISISAVQ---WL-CNADKAS-HEPR------LRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 106 ~~~-~~~~~fD~Vis~~~l~---~l-~~~~~~~-~~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
... +..++||.|++..... .+ .+++... ..+. .....++..+.++|+|||++++.+..
T Consensus 305 ~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 305 PAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred chhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 222 3457899999654211 11 1111111 1111 12357899999999999999988753
No 113
>PRK00811 spermidine synthase; Provisional
Probab=99.33 E-value=5.4e-11 Score=108.15 Aligned_cols=124 Identities=17% Similarity=0.100 Sum_probs=92.0
Q ss_pred CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCC----------cceEEEccCCCCCCCCCCcccEEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREV----------EGDLLLGDMGQGLGLRPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~----------~~~~~~~D~~~~~~~~~~~fD~Vis 119 (291)
+.+||+||||+|.++..++++ + .+|++||+++.+++.|++.+. .+.++.+|....+....++||+||+
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 679999999999999998887 4 689999999999999998653 3678888875545445679999998
Q ss_pred CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~ 183 (291)
..+-++.+. ...-...|++.+.+.|+|||.++++... ........+...+.+. |..
T Consensus 157 D~~dp~~~~-------~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~ 214 (283)
T PRK00811 157 DSTDPVGPA-------EGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPI 214 (283)
T ss_pred CCCCCCCch-------hhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCC
Confidence 754433211 1111368899999999999999987532 2344556666677776 654
No 114
>PLN03075 nicotianamine synthase; Provisional
Probab=99.31 E-value=4e-11 Score=108.67 Aligned_cols=99 Identities=15% Similarity=0.072 Sum_probs=77.0
Q ss_pred CCeEEEEcCCCchhHHH-HH-Hc--CCeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGET-LS-EN--GHQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLGLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~-L~-~~--g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~~~~~~fD~Vis~ 120 (291)
+.+|||||||.|.++.. ++ .+ +..++|+|+++.+++.|++... .+.|..+|+.+..+ ..+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~~ 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFLA 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEEe
Confidence 67999999998854433 33 33 3689999999999999998762 27899999855322 24789999999
Q ss_pred CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
+++++...+ ...+|..+++.|+|||.+++..
T Consensus 203 -ALi~~dk~~---------k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEE---------KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -ccccccccc---------HHHHHHHHHHhcCCCcEEEEec
Confidence 777663211 5789999999999999999976
No 115
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.30 E-value=3.8e-11 Score=100.83 Aligned_cols=109 Identities=17% Similarity=0.100 Sum_probs=81.3
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCCCCc
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLRPGV 113 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~~~~ 113 (291)
.+.+++.+.+.. +..|||||||+|.++..+++.+..++++|+++.|++.++++.. +++++.+|+.+ +++....
T Consensus 2 ~~~i~~~~~~~~---~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~-~~~~~~~ 77 (169)
T smart00650 2 IDKIVRAANLRP---GDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALK-FDLPKLQ 77 (169)
T ss_pred HHHHHHhcCCCC---cCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhc-CCccccC
Confidence 356677777665 6799999999999999999998999999999999999998764 47899999844 5665667
Q ss_pred ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
||.|+++..++.. ...+..++... .+.++|.++++.
T Consensus 78 ~d~vi~n~Py~~~----------~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 78 PYKVVGNLPYNIS----------TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred CCEEEECCCcccH----------HHHHHHHHhcC--CCcceEEEEEEH
Confidence 9999998655421 11133333321 245888888874
No 116
>PLN02672 methionine S-methyltransferase
Probab=99.30 E-value=4e-11 Score=124.61 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=98.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------------------cceEEEccCCCCCC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------------------EGDLLLGDMGQGLG 108 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------------------~~~~~~~D~~~~~~ 108 (291)
+.+|||||||+|.++..++..+ ..++|+|+|+.+++.|++|.. .+.++++|+.+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 3589999999999999999874 689999999999999977642 36889999865442
Q ss_pred CCCCcccEEEECCchhhhcccccc-------CCc----------------------hHHHHHHHHHHHHHhccCCcEEEE
Q 043626 109 LRPGVVDGAISISAVQWLCNADKA-------SHE----------------------PRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 109 ~~~~~fD~Vis~~~l~~l~~~~~~-------~~~----------------------p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
.....||+|||| ..++++++.. .++ .-.-+.+++..+.++|+|||.+++
T Consensus 199 ~~~~~fDlIVSN--PPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGC--IPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEEC--CCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 212379999998 4455443211 122 222237788899999999999999
Q ss_pred EEcCCChHHHHHHH-HHHHHcCCCCcEEEeC
Q 043626 160 QIYPESVAQRELIL-GAAMRAGFAGGVVVDY 189 (291)
Q Consensus 160 ~~~~~~~~~~~~i~-~~~~~aGF~~~~~~~~ 189 (291)
.+.. .|.+.+. .++.+.||....+...
T Consensus 277 EiG~---~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 277 NMGG---RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred EECc---cHHHHHHHHHHHHCCCCeeEEeee
Confidence 9954 4666777 5888899987444444
No 117
>PRK04457 spermidine synthase; Provisional
Probab=99.29 E-value=8.1e-11 Score=105.83 Aligned_cols=123 Identities=15% Similarity=0.191 Sum_probs=88.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
+.+|||||||+|.++..++.. +.++++||+++.+++.|++.+. .+.++.+|..+.+...+++||+|++.. +
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~ 145 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-F 145 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-C
Confidence 679999999999999999876 3789999999999999998642 367888997554443357899999752 1
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
+.. ...+......|++.+.++|+|||++++.++..+.. ...+...+.+. |..
T Consensus 146 ~~~------~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~-~~~~l~~l~~~-F~~ 197 (262)
T PRK04457 146 DGE------GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKR-YDRYLERLESS-FEG 197 (262)
T ss_pred CCC------CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchh-HHHHHHHHHHh-cCC
Confidence 110 00011113689999999999999999987665433 34445555444 865
No 118
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.29 E-value=1e-10 Score=112.69 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~ 107 (291)
...+.+.+++.+...+ +.+|||+|||+|.++..|+..+..++|+|+|+.|++.|+++. .++.++++|+.+.+
T Consensus 282 ~e~l~~~vl~~l~~~~---~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQP---GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCCC---CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 4567788888887654 679999999999999999999899999999999999998764 24789999985433
Q ss_pred ---CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC-
Q 043626 108 ---GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG- 183 (291)
Q Consensus 108 ---~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~- 183 (291)
++..++||+|+++..- ..+...+..+.+ |+|++.++++..|. .+..=...+...||.-
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr--------------~g~~~~~~~l~~-~~~~~ivyvSCnp~---tlaRDl~~L~~~gY~l~ 420 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPR--------------AGAAEVMQALAK-LGPKRIVYVSCNPA---TLARDAGVLVEAGYRLK 420 (443)
T ss_pred hhhhhhcCCCCEEEECcCC--------------cChHHHHHHHHh-cCCCeEEEEEeChH---HhhccHHHHhhCCcEEE
Confidence 3445789999976221 113355555555 68999999998543 3222233455788875
Q ss_pred -cEEEe-CCCCC
Q 043626 184 -GVVVD-YPHSS 193 (291)
Q Consensus 184 -~~~~~-~p~~~ 193 (291)
...+| ||++.
T Consensus 421 ~i~~~DmFP~T~ 432 (443)
T PRK13168 421 RAGMLDMFPHTG 432 (443)
T ss_pred EEEEeccCCCCC
Confidence 22333 46653
No 119
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.28 E-value=4.2e-11 Score=89.49 Aligned_cols=97 Identities=28% Similarity=0.346 Sum_probs=78.3
Q ss_pred eEEEEcCCCchhHHHHHH-cCCeEEEEeCCHHHHHHHHhc-----CCcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 54 LLLDIGCGSGLSGETLSE-NGHQWIGLDISQSMLNIALER-----EVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~-----~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+|||+|||+|..+..++. .+..++++|+++.++..+++. ...+.++..|+........++||+|+++.+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 489999999999999988 458999999999999988722 1236788888855433356789999999998873
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
......++..+.+.|++||.+++.
T Consensus 80 ---------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 ---------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ---------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 122678999999999999999986
No 120
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.27 E-value=1.4e-10 Score=101.58 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=83.8
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhc-----------------CCcceEEEccCCCCCC--CCCC
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALER-----------------EVEGDLLLGDMGQGLG--LRPG 112 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~-----------------~~~~~~~~~D~~~~~~--~~~~ 112 (291)
+.+||+.|||.|.....|+++|+.|+|+|+|+.+++.+.+. ...++++++|+.+.-+ -..+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 57999999999999999999999999999999999997552 1247899999855321 1136
Q ss_pred cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
.||+|+-..++.+|+ ...-.+.++.+.++|+|||.+++.++
T Consensus 124 ~fD~VyDra~~~Alp---------p~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 124 VFDIWYDRGAYIALP---------NDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CcCeeeeehhHhcCC---------HHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 899999999999883 33356899999999999999887654
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=3.2e-10 Score=109.36 Aligned_cols=139 Identities=14% Similarity=0.069 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG 104 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~ 104 (291)
|......+...+...+ +..|||+|||+|..+..+++. ...++++|+++.+++.++++.. ++.++++|+.
T Consensus 235 qd~~s~lv~~~l~~~~---g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 311 (444)
T PRK14902 235 QDESSMLVAPALDPKG---GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDAR 311 (444)
T ss_pred EChHHHHHHHHhCCCC---CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 4455555566666655 679999999999999999875 3799999999999999987642 3688899985
Q ss_pred CCCCCCCCcccEEEECCchh---hh-ccccccCC-chHH------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHH
Q 043626 105 QGLGLRPGVVDGAISISAVQ---WL-CNADKASH-EPRL------RLKAFFGSLYRCLARGARAVFQIYPESVAQRELIL 173 (291)
Q Consensus 105 ~~~~~~~~~fD~Vis~~~l~---~l-~~~~~~~~-~p~~------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~ 173 (291)
.......++||+|++..... .+ .+++.... .+.. ....++..+.++|+|||.++.++..-...+-+...
T Consensus 312 ~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv 391 (444)
T PRK14902 312 KVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVI 391 (444)
T ss_pred cccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHH
Confidence 43221137899999864211 01 01111110 1111 12568999999999999999876554444433333
Q ss_pred H
Q 043626 174 G 174 (291)
Q Consensus 174 ~ 174 (291)
.
T Consensus 392 ~ 392 (444)
T PRK14902 392 E 392 (444)
T ss_pred H
Confidence 3
No 122
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=1.5e-10 Score=111.40 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG 104 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~ 104 (291)
|...+..+..+|...+ +.+|||+|||+|..+..+++. ..+++++|+++.+++.++++.. ++.++++|+.
T Consensus 237 qd~~s~l~~~~l~~~~---g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~ 313 (434)
T PRK14901 237 QDRSAQLVAPLLDPQP---GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR 313 (434)
T ss_pred ECHHHHHHHHHhCCCC---cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence 4455556666676655 679999999999999999876 2689999999999999987653 4688888975
Q ss_pred CCC---CCCCCcccEEEECC------chhhhccccccCC-chH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHH
Q 043626 105 QGL---GLRPGVVDGAISIS------AVQWLCNADKASH-EPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQ 168 (291)
Q Consensus 105 ~~~---~~~~~~fD~Vis~~------~l~~l~~~~~~~~-~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~ 168 (291)
... ++..++||.|++.. ++.+-++ .... .+. .....++.+++++|||||+++.++..-.+++
T Consensus 314 ~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~--~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~E 391 (434)
T PRK14901 314 NLLELKPQWRGYFDRILLDAPCSGLGTLHRHPD--ARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAE 391 (434)
T ss_pred hcccccccccccCCEEEEeCCCCcccccccCcc--hhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 422 13457899999752 2222211 1110 011 1136889999999999999998876544443
Q ss_pred -HHHHHHHHHHc-CCCCcEE-E-eCCCCCCCCcEEEEEe
Q 043626 169 -RELILGAAMRA-GFAGGVV-V-DYPHSSKSRKEFLVLT 203 (291)
Q Consensus 169 -~~~i~~~~~~a-GF~~~~~-~-~~p~~~~~~~~~l~l~ 203 (291)
...+...+.+. +|..... . .+|+......+|++.+
T Consensus 392 ne~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l 430 (434)
T PRK14901 392 NEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVL 430 (434)
T ss_pred HHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence 33344444443 4542100 0 2454444555665543
No 123
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=6.8e-11 Score=113.49 Aligned_cols=141 Identities=11% Similarity=0.131 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccC
Q 043626 32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDM 103 (291)
Q Consensus 32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~ 103 (291)
+|...+..+..++...+ +.+|||+|||+|..+..+++. +..|+++|+|+.+++.++++.. .+.++++|+
T Consensus 221 ~Qd~~s~~~~~~l~~~~---g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da 297 (431)
T PRK14903 221 VQGESSQIVPLLMELEP---GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA 297 (431)
T ss_pred EECHHHHHHHHHhCCCC---CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence 34455555566666655 679999999999999999876 4799999999999999987753 357888887
Q ss_pred CCCCC-CCCCcccEEEECCc---hhhhc-cccccCCchHH-------HHHHHHHHHHHhccCCcEEEEEEcCCChHHHHH
Q 043626 104 GQGLG-LRPGVVDGAISISA---VQWLC-NADKASHEPRL-------RLKAFFGSLYRCLARGARAVFQIYPESVAQREL 171 (291)
Q Consensus 104 ~~~~~-~~~~~fD~Vis~~~---l~~l~-~~~~~~~~p~~-------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~ 171 (291)
.. ++ +..++||.|++... +..+. +++.....+.. ....++.++++.|+|||.+++++..-.+++-+.
T Consensus 298 ~~-l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~ 376 (431)
T PRK14903 298 ER-LTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTE 376 (431)
T ss_pred hh-hhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHH
Confidence 43 33 44678999997522 22221 11111111111 136679999999999999999887755544444
Q ss_pred HHHHH
Q 043626 172 ILGAA 176 (291)
Q Consensus 172 i~~~~ 176 (291)
....+
T Consensus 377 vv~~f 381 (431)
T PRK14903 377 VVKRF 381 (431)
T ss_pred HHHHH
Confidence 44433
No 124
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.24 E-value=2.2e-11 Score=105.79 Aligned_cols=110 Identities=25% Similarity=0.314 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMG 104 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~ 104 (291)
+..+..+++++|.+.+ +.+|||||||||..+..|+.. + ..|+++|+.+..++.|+++.. ++.++++|..
T Consensus 57 ~P~~~a~~l~~L~l~p---g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 57 APSMVARMLEALDLKP---GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp -HHHHHHHHHHTTC-T---T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred HHHHHHHHHHHHhcCC---CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh
Confidence 4567788999999887 789999999999999999987 3 479999999999999998764 4788999975
Q ss_pred CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 105 QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 105 ~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
.+++ ..++||.|++..+...++. .+...|++||++++-+..
T Consensus 134 ~g~~-~~apfD~I~v~~a~~~ip~-----------------~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 134 EGWP-EEAPFDRIIVTAAVPEIPE-----------------ALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp GTTG-GG-SEEEEEESSBBSS--H-----------------HHHHTEEEEEEEEEEESS
T ss_pred hccc-cCCCcCEEEEeeccchHHH-----------------HHHHhcCCCcEEEEEEcc
Confidence 5554 3568999999888765432 467789999999998754
No 125
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.5e-10 Score=111.60 Aligned_cols=136 Identities=16% Similarity=0.070 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG 104 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~ 104 (291)
|......++.+|...+ +..|||+|||+|..+..+++. +..++++|+|+.|++.++++.. .+.++++|+.
T Consensus 235 qd~~s~l~~~~l~~~~---g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~ 311 (445)
T PRK14904 235 QNPTQALACLLLNPQP---GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR 311 (445)
T ss_pred eCHHHHHHHHhcCCCC---CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc
Confidence 3333444555666554 679999999999999888874 3699999999999999987653 3678888985
Q ss_pred CCCCCCCCcccEEEECC---chhhh-ccccccCC-chH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHH
Q 043626 105 QGLGLRPGVVDGAISIS---AVQWL-CNADKASH-EPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELIL 173 (291)
Q Consensus 105 ~~~~~~~~~fD~Vis~~---~l~~l-~~~~~~~~-~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~ 173 (291)
.. + ..++||.|++.. ....+ .+++.... .+. .....+|..++++|+|||++++.+..-.+.+-+...
T Consensus 312 ~~-~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v 389 (445)
T PRK14904 312 SF-S-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQI 389 (445)
T ss_pred cc-c-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHH
Confidence 43 2 356899999631 11111 11111111 111 113468999999999999999998765544433333
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=9.6e-11 Score=108.05 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQ 105 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~ 105 (291)
..+...+++.+.+++ +.+|||||||+|.++..+++.. ..|+++|+++.|++.|+++.. ++.++.+|...
T Consensus 66 p~l~a~ll~~L~i~~---g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 66 PSLMALFMEWVGLDK---GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHHHhcCCCC---CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 355667777777765 6799999999999999999864 369999999999999987532 36788888744
Q ss_pred CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 106 GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 106 ~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.. ...++||+|++...+..+ ...+.+.|+|||++++..
T Consensus 143 ~~-~~~~~fD~Ii~~~g~~~i-----------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GV-PEFAPYDVIFVTVGVDEV-----------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cc-cccCCccEEEECCchHHh-----------------HHHHHHhcCCCCEEEEEe
Confidence 33 334679999987665543 224677899999999865
No 127
>PHA03412 putative methyltransferase; Provisional
Probab=99.22 E-value=1e-10 Score=102.50 Aligned_cols=105 Identities=11% Similarity=0.072 Sum_probs=78.8
Q ss_pred CCeEEEEcCCCchhHHHHHHc-----CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-----GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL 126 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-----g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l 126 (291)
+.+|||+|||+|.++..++.. ...|+|+|+++.+++.|+++...+.++.+|+.. .++ .++||+||+|..+.-+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~-~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALT-TEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhc-ccc-cCCccEEEECCCCCCc
Confidence 569999999999999988864 368999999999999999998888999999843 333 5689999999766544
Q ss_pred cccc-ccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 127 CNAD-KASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 127 ~~~~-~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
...+ ...+........++..+.+++++|+. |+
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 3222 11122333356788888886666665 54
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.22 E-value=3.6e-10 Score=108.42 Aligned_cols=131 Identities=16% Similarity=0.127 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc----ceE--EEccC
Q 043626 32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE----GDL--LLGDM 103 (291)
Q Consensus 32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~----~~~--~~~D~ 103 (291)
+|...+..++..|...+ +.+|||+|||+|..+..+++.. ..++++|+++.+++.++++... +.+ ..+|.
T Consensus 222 ~Qd~~s~~~~~~L~~~~---g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 222 VQDASAQWVATWLAPQN---EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred EECHHHHHHHHHhCCCC---CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 35556667777777665 6799999999999999998862 7999999999999999877532 223 45554
Q ss_pred CCCCCC--CCCcccEEEEC------CchhhhccccccC-CchH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHH
Q 043626 104 GQGLGL--RPGVVDGAISI------SAVQWLCNADKAS-HEPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQ 168 (291)
Q Consensus 104 ~~~~~~--~~~~fD~Vis~------~~l~~l~~~~~~~-~~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~ 168 (291)
.. .++ ..++||.|++. .++.+.++ ... ..|. .....+|.+++++|+|||.++.++..-++++
T Consensus 299 ~~-~~~~~~~~~fD~VllDaPcSg~G~~~~~p~--~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~E 375 (426)
T TIGR00563 299 RG-PSQWAENEQFDRILLDAPCSATGVIRRHPD--IKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEE 375 (426)
T ss_pred cc-ccccccccccCEEEEcCCCCCCcccccCcc--hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 22 222 46789999964 22332221 111 0111 1136789999999999999999877654433
No 129
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=2.3e-10 Score=103.06 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV-----EGDLLLGDMG 104 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~ 104 (291)
|......+...|...+ +..|||+|||+|..+..+++. ...|+++|+++.+++.++++.. ++.++..|..
T Consensus 56 qd~~s~~~~~~l~~~~---g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 132 (264)
T TIGR00446 56 QEASSMIPPLALEPDP---PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR 132 (264)
T ss_pred ECHHHHHHHHHhCCCC---cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH
Confidence 3333334444555554 679999999999999998875 2689999999999999987652 3677888863
Q ss_pred CCCCCCCCcccEEEECCchh---hh-ccccccC-CchH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHH
Q 043626 105 QGLGLRPGVVDGAISISAVQ---WL-CNADKAS-HEPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELIL 173 (291)
Q Consensus 105 ~~~~~~~~~fD~Vis~~~l~---~l-~~~~~~~-~~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~ 173 (291)
.++...+.||.|++..... .+ .+++... ..+. .....+|..+.++|+|||+++.++..-+..+-+.+.
T Consensus 133 -~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv 211 (264)
T TIGR00446 133 -VFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVV 211 (264)
T ss_pred -HhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHH
Confidence 3343446799999753211 11 0111100 0111 113568999999999999999988776665545555
Q ss_pred HHHHH
Q 043626 174 GAAMR 178 (291)
Q Consensus 174 ~~~~~ 178 (291)
+.+.+
T Consensus 212 ~~~l~ 216 (264)
T TIGR00446 212 DYLLE 216 (264)
T ss_pred HHHHH
Confidence 55443
No 130
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.2e-10 Score=103.26 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=87.5
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC----cc-eEEEccCCCCCCC
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV----EG-DLLLGDMGQGLGL 109 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~----~~-~~~~~D~~~~~~~ 109 (291)
++.+++.|.... ...|||+|||.|.++..+++.. ..++.+|+|..+++.|+++.. +. .++..|+.+...
T Consensus 147 S~lLl~~l~~~~---~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~- 222 (300)
T COG2813 147 SRLLLETLPPDL---GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE- 222 (300)
T ss_pred HHHHHHhCCccC---CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc-
Confidence 455677776665 4499999999999999999986 699999999999999998764 23 567777644332
Q ss_pred CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
++||+||||..+|-=.. .-...-.++|....+.|++||.|.+...
T Consensus 223 --~kfd~IisNPPfh~G~~------v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 223 --GKFDLIISNPPFHAGKA------VVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred --ccccEEEeCCCccCCcc------hhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 39999999988862111 1111134899999999999999999876
No 131
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.20 E-value=9.7e-11 Score=97.63 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=64.4
Q ss_pred EEEeCCHHHHHHHHhcCC--------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHH
Q 043626 77 IGLDISQSMLNIALEREV--------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLY 148 (291)
Q Consensus 77 ~gvDis~~ml~~a~~~~~--------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~ 148 (291)
+|+|+|+.||+.|+++.. +++++++|+ ..+|+.+++||+|++.++++|+.+ ...++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~v~~~~~l~~~~d-----------~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA-IDLPFDDCEFDAVTMGYGLRNVVD-----------RLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech-hhCCCCCCCeeEEEecchhhcCCC-----------HHHHHHHHH
Confidence 489999999999976532 378999998 568998999999999999999977 779999999
Q ss_pred HhccCCcEEEEEEc
Q 043626 149 RCLARGARAVFQIY 162 (291)
Q Consensus 149 ~~LkpgG~lv~~~~ 162 (291)
++|||||.+++..+
T Consensus 69 rvLkpGG~l~i~d~ 82 (160)
T PLN02232 69 RVLKPGSRVSILDF 82 (160)
T ss_pred HHcCcCeEEEEEEC
Confidence 99999999987644
No 132
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=1.6e-10 Score=117.16 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=93.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
+.+|||+|||+|.++..++..| .+|++||+|+.+++.|+++.. .+.++.+|+.+.+....++||+||++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 5699999999999999999987 479999999999999998752 36889999754332125689999987321
Q ss_pred hhhccccc--cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 124 QWLCNADK--ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 124 ~~l~~~~~--~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
+..... ........+..++..+.++|+|||.+++...... .......+.++||..
T Consensus 619 --f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---~~~~~~~~~~~g~~~ 675 (702)
T PRK11783 619 --FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---FKMDEEGLAKLGLKA 675 (702)
T ss_pred --CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---CChhHHHHHhCCCeE
Confidence 111111 1123445577889999999999999998775433 333367778889875
No 133
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=5.3e-10 Score=98.75 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccC--
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREVE------GDLLLGDM-- 103 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~-- 103 (291)
.++.+.+++.++......+..|||+|||||..+..++.. + +.++++|.|+.++..|.+|... +.+++.+|
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 466677777775443222568999999999998888765 3 8999999999999999987642 34443333
Q ss_pred --CCCCCCCCCcccEEEECCchhhhcccc-------ccCCchHHHH----------HHHHHHHHHhccCCcEEEEEEc--
Q 043626 104 --GQGLGLRPGVVDGAISISAVQWLCNAD-------KASHEPRLRL----------KAFFGSLYRCLARGARAVFQIY-- 162 (291)
Q Consensus 104 --~~~~~~~~~~fD~Vis~~~l~~l~~~~-------~~~~~p~~~l----------~~~l~~l~~~LkpgG~lv~~~~-- 162 (291)
....+...+++|+++|| ..|+.+.| ...++|..++ ..++.-+.+.|+|||.+.|.+.
T Consensus 211 d~~~~~~l~~~~~dllvsN--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSN--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ccccccccccCceeEEecC--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 23344557899999999 44555443 3345665553 6677788899999999999987
Q ss_pred CCChHHHHHHHH
Q 043626 163 PESVAQRELILG 174 (291)
Q Consensus 163 ~~~~~~~~~i~~ 174 (291)
+.++.-...++.
T Consensus 289 ~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 289 KEHSYLVRIWMI 300 (328)
T ss_pred ccCcHHHHHHHH
Confidence 444444444443
No 134
>PRK01581 speE spermidine synthase; Validated
Probab=99.19 E-value=9.4e-10 Score=102.14 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=93.3
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc------------CCcceEEEccCCCCCCCCCCcccEE
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER------------EVEGDLLLGDMGQGLGLRPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~------------~~~~~~~~~D~~~~~~~~~~~fD~V 117 (291)
+.+||+||||.|.....+.+.. ..+++||+++.|++.|++. .+.+.++.+|....+....+.||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 6699999999999988888874 7999999999999999962 1346788888765555556789999
Q ss_pred EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCCcEEEe
Q 043626 118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--SVAQRELILGAAMRAGFAGGVVVD 188 (291)
Q Consensus 118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~~~~~~ 188 (291)
|+... ++... .....--..|+..+++.|+|||+++++.... .......+...+.++||.......
T Consensus 231 IvDl~-----DP~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 231 IIDFP-----DPATE-LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred EEcCC-----Ccccc-chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEE
Confidence 98732 11100 0111112679999999999999999875321 122334577888999887533333
No 135
>PRK03612 spermidine synthase; Provisional
Probab=99.18 E-value=1.9e-10 Score=112.86 Aligned_cols=124 Identities=21% Similarity=0.085 Sum_probs=93.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC------------CcceEEEccCCCCCCCCCCcccEE
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE------------VEGDLLLGDMGQGLGLRPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~------------~~~~~~~~D~~~~~~~~~~~fD~V 117 (291)
+.+|||||||+|..+..++++. .++++||+++.+++.|+++. +.++++.+|....+...+++||+|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 6799999999999999988874 69999999999999999832 346788888755444445799999
Q ss_pred EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCC
Q 043626 118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGF 181 (291)
Q Consensus 118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF 181 (291)
++.....+.+.. ...--..|++.+.+.|+|||.++++..+ ........+.+.+.+.||
T Consensus 378 i~D~~~~~~~~~------~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 378 IVDLPDPSNPAL------GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred EEeCCCCCCcch------hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 998543321110 0011246899999999999999997642 234556778889999999
No 136
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.2e-09 Score=89.50 Aligned_cols=131 Identities=21% Similarity=0.312 Sum_probs=99.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHh----cCCcceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALE----REVEGDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~----~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+..+||||||||..+..|+.. +..+.++||++.+++...+ +...++.++.|+...+. .++.|+++.|..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvfNPP-- 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVFNPP-- 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEECCC--
Confidence 568999999999999998876 2678999999998887554 44557899999866544 599999998732
Q ss_pred hhcccc------------ccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEe
Q 043626 125 WLCNAD------------KASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVD 188 (291)
Q Consensus 125 ~l~~~~------------~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~ 188 (291)
+++.++ ....+......+++..+-.+|.|.|.+++.+...| ...+|...+...||...+...
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--~p~ei~k~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--KPKEILKILEKKGYGVRIAMQ 193 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--CHHHHHHHHhhcccceeEEEE
Confidence 333222 23356666678999999999999999999876655 345677889999998744433
No 137
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=7.7e-10 Score=96.14 Aligned_cols=105 Identities=22% Similarity=0.327 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcc---eE--------------------------E
Q 043626 51 VPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEG---DL--------------------------L 99 (291)
Q Consensus 51 ~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~---~~--------------------------~ 99 (291)
.+..+|||||.+|.++..+++.. ..++|+||++..|..|+++.... .. +
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 36799999999999999999874 68999999999999999865320 00 0
Q ss_pred EccCC---------------CCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 100 LGDMG---------------QGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 100 ~~D~~---------------~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
..|+. +.+.+....||+|+|.++--|+-- ......+.+||..++++|.|||+||+.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHL-----NwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHL-----NWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEec-----ccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000 112234568999999888776521 122344899999999999999999994
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.13 E-value=1.2e-09 Score=98.69 Aligned_cols=124 Identities=19% Similarity=0.087 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~ 120 (291)
+.+||+||||+|.++..++... ..++++|+++.+++.|++... .++++.+|....+....++||+||+.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 5699999999999998888774 689999999999999988642 25666666543333335799999986
Q ss_pred CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC
Q 043626 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~ 183 (291)
....+-+. ...-...+++.+.+.|+|||.++++... ........+...+... |..
T Consensus 153 ~~~~~~~~-------~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~ 209 (270)
T TIGR00417 153 STDPVGPA-------ETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA-FPI 209 (270)
T ss_pred CCCCCCcc-------cchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH-CCC
Confidence 54322110 1111358899999999999999987432 1234445555566666 654
No 139
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.13 E-value=2.4e-10 Score=99.96 Aligned_cols=109 Identities=25% Similarity=0.275 Sum_probs=81.7
Q ss_pred HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh-cCC----------------cceEEEc
Q 043626 39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE-REV----------------EGDLLLG 101 (291)
Q Consensus 39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~-~~~----------------~~~~~~~ 101 (291)
..++.+..+. +.+||..|||.|.....|+++|++|+|+|+|+.+++.+.+ +.. .+.++++
T Consensus 28 ~~~~~l~~~~---~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 28 EYLDSLALKP---GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHTTST---SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHhcCCCC---CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 3344455554 6799999999999999999999999999999999999843 221 1578899
Q ss_pred cCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 102 DMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 102 D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
|+...-+-..++||+|+=..++..|+. ..-.+..+.+.++|+|||.+++
T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp---------~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPP---------EMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-G---------GGHHHHHHHHHHCEEEEEEEEE
T ss_pred ccccCChhhcCCceEEEEecccccCCH---------HHHHHHHHHHHHHhCCCCcEEE
Confidence 985532323368999999888887743 2256899999999999999433
No 140
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.13 E-value=3.4e-10 Score=102.02 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=85.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc-----------ceEEEccCCC-----CCCCCCCcc
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE-----------GDLLLGDMGQ-----GLGLRPGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~-----------~~~~~~D~~~-----~~~~~~~~f 114 (291)
...+||+|||-|.-...+...| ..++|+||++..++.|+.+..+ +.|+.+|-.. .+++.+.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 5689999999999888888887 8999999999999999987643 4778887543 245556669
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
|+|-|.+++|+- ++.......++.++..+|+|||.++-++
T Consensus 198 DivScQF~~HYa-------Fetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 198 DIVSCQFAFHYA-------FETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred ceeeeeeeEeee-------eccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 999999999985 3455668899999999999999999876
No 141
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.13 E-value=8.2e-10 Score=106.13 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~ 107 (291)
...+.+.+++.+.+.+ +.+|||+|||+|.++..|+..+..|+|+|+++.|++.|+++. .++.++.+|+.+.+
T Consensus 277 ~~~l~~~~~~~l~~~~---~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 277 NEKLVDRALEALELQG---EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHhccCC---CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 4456677777776654 579999999999999999998889999999999999999864 35789999985432
Q ss_pred ---CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 108 ---GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 108 ---~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
++..++||+|++...- ... ...++..+. .|+|++.++++. ++..+..-...+.+.||..
T Consensus 354 ~~~~~~~~~~D~vi~dPPr--------~G~-----~~~~l~~l~-~l~~~~ivyvsc---~p~tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPR--------KGC-----AAEVLRTII-ELKPERIVYVSC---NPATLARDLEFLCKEGYGI 415 (431)
T ss_pred HHHHhcCCCCCEEEECcCC--------CCC-----CHHHHHHHH-hcCCCEEEEEcC---CHHHHHHHHHHHHHCCeeE
Confidence 2335679999965221 000 134555544 478999888876 4555555566677888864
No 142
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.12 E-value=1.6e-09 Score=95.65 Aligned_cols=130 Identities=16% Similarity=0.112 Sum_probs=98.2
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
..++||||+|.|..+..++....+|++.++|+.|....+++.- .++..+ + ..-.+..||+|.|..+|....+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~--~vl~~~--~-w~~~~~~fDvIscLNvLDRc~~--- 166 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGF--TVLDID--D-WQQTDFKFDVISCLNVLDRCDR--- 166 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCC--eEEehh--h-hhccCCceEEEeehhhhhccCC---
Confidence 5689999999999999999999999999999999888877643 233222 2 2223468999999999987644
Q ss_pred cCCchHHHHHHHHHHHHHhccCCcEEEEEE----------cC--C-C------------hHHHHHHHHHHHHcCCCCcEE
Q 043626 132 ASHEPRLRLKAFFGSLYRCLARGARAVFQI----------YP--E-S------------VAQRELILGAAMRAGFAGGVV 186 (291)
Q Consensus 132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~----------~~--~-~------------~~~~~~i~~~~~~aGF~~~~~ 186 (291)
+..+++.+++.|+|+|++++.+ .+ . . .+++..+.+.+..+||+-...
T Consensus 167 --------P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~ 238 (265)
T PF05219_consen 167 --------PLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERW 238 (265)
T ss_pred --------HHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5689999999999999999841 11 0 0 136667779999999987555
Q ss_pred EeCCCCCCCCc
Q 043626 187 VDYPHSSKSRK 197 (291)
Q Consensus 187 ~~~p~~~~~~~ 197 (291)
..-|...++.-
T Consensus 239 tr~PYLcEGD~ 249 (265)
T PF05219_consen 239 TRLPYLCEGDL 249 (265)
T ss_pred eccCccccCcc
Confidence 55676665443
No 143
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.09 E-value=3.2e-10 Score=97.84 Aligned_cols=138 Identities=19% Similarity=0.087 Sum_probs=93.6
Q ss_pred HHHHHHHHhCCCC---CCCCCeEEEEcCCCchhHHHH-HHcCCeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCC
Q 043626 36 LSERALELLALPD---DGVPRLLLDIGCGSGLSGETL-SENGHQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQG 106 (291)
Q Consensus 36 ~~~~~lelL~~~~---~~~~~~VLDiGcGsG~~~~~L-~~~g~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~ 106 (291)
-+...|..|.... .....+.||.|||-|..+..| .....+|..||..+..++.|++.... +++++..+ +.
T Consensus 37 gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL-Q~ 115 (218)
T PF05891_consen 37 GSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL-QD 115 (218)
T ss_dssp HHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G-GG
T ss_pred HHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH-hh
Confidence 3445555554331 112568999999999999866 45579999999999999999965543 57888887 43
Q ss_pred CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE---------Ec-CCCh---HHHHHHH
Q 043626 107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ---------IY-PESV---AQRELIL 173 (291)
Q Consensus 107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~---------~~-~~~~---~~~~~i~ 173 (291)
+...++.||+|.+.+++.||.|. .+..||+.+...|+|+|.+++. .+ .++. ...+.+.
T Consensus 116 f~P~~~~YDlIW~QW~lghLTD~---------dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~ 186 (218)
T PF05891_consen 116 FTPEEGKYDLIWIQWCLGHLTDE---------DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR 186 (218)
T ss_dssp ----TT-EEEEEEES-GGGS-HH---------HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred ccCCCCcEeEEEehHhhccCCHH---------HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence 33335799999999999999774 4899999999999999999993 11 1110 2456788
Q ss_pred HHHHHcCCCC
Q 043626 174 GAAMRAGFAG 183 (291)
Q Consensus 174 ~~~~~aGF~~ 183 (291)
+++.+||+.-
T Consensus 187 ~lF~~AGl~~ 196 (218)
T PF05891_consen 187 ELFKQAGLRL 196 (218)
T ss_dssp HHHHHCT-EE
T ss_pred HHHHHcCCEE
Confidence 9999999974
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.08 E-value=9.6e-10 Score=94.60 Aligned_cols=119 Identities=25% Similarity=0.360 Sum_probs=84.3
Q ss_pred eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc-----CCcceEEEccCCCCCC--CCCCcccEEEECCchh
Q 043626 54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER-----EVEGDLLLGDMGQGLG--LRPGVVDGAISISAVQ 124 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~-----~~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l~ 124 (291)
.+||||||.|.+...+|... ..++|+|++...+..+..+ ..++.++++|+...+. ++++++|.|..++.=.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 89999999999999999874 8999999999988877654 3568999999855332 4579999999988877
Q ss_pred hhccc--cccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHc
Q 043626 125 WLCNA--DKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRA 179 (291)
Q Consensus 125 ~l~~~--~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~a 179 (291)
|.... .++..+ ..|+..++++|+|||.+.+.+ +.....+.+...+..+
T Consensus 100 WpK~rH~krRl~~-----~~fl~~~~~~L~~gG~l~~~T--D~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 100 WPKKRHHKRRLVN-----PEFLELLARVLKPGGELYFAT--DVEEYAEWMLEQFEES 149 (195)
T ss_dssp --SGGGGGGSTTS-----HHHHHHHHHHEEEEEEEEEEE--S-HHHHHHHHHHHHHH
T ss_pred CcccchhhhhcCC-----chHHHHHHHHcCCCCEEEEEe--CCHHHHHHHHHHHHhc
Confidence 76431 111222 589999999999999999887 3444555666666664
No 145
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.08 E-value=6.1e-10 Score=102.76 Aligned_cols=116 Identities=18% Similarity=0.114 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~ 107 (291)
...+.+.+.+++.... +.+|||+|||+|.++..++..+..|+|+|+|+.|++.|+++. .+++++++|+.+..
T Consensus 158 ~~~l~~~v~~~l~~~~---~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 158 AAQLYATARDWVRELP---PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred HHHHHHHHHHHHHhcC---CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 3455666666665333 569999999999999999999999999999999999998764 24789999985433
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES 165 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~ 165 (291)
....+.||+|+++..- ..+..-+..+...+.|++.++++..|..
T Consensus 235 ~~~~~~~D~Vv~dPPr--------------~G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 235 TAQGEVPDLVLVNPPR--------------RGIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred HhcCCCCeEEEECCCC--------------CCccHHHHHHHHHcCCCeEEEEECCccc
Confidence 2224579999977221 1111222233344688898998887754
No 146
>PLN02366 spermidine synthase
Probab=99.06 E-value=6.5e-09 Score=95.46 Aligned_cols=122 Identities=21% Similarity=0.183 Sum_probs=88.2
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCC-CCCCcccEEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLG-LRPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~-~~~~~fD~Vis 119 (291)
+.+||+||||.|.+...++++. ..++.|||++.+++.|++.++ .+.++.+|....+. ...+.||+||+
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 6799999999999999998873 689999999999999998653 36788888643332 22568999998
Q ss_pred CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCC
Q 043626 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGF 181 (291)
Q Consensus 120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF 181 (291)
...-.+-+ ....--..|++.+.++|+|||.++.+... ........+...+... |
T Consensus 172 D~~dp~~~-------~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~-F 227 (308)
T PLN02366 172 DSSDPVGP-------AQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET-F 227 (308)
T ss_pred cCCCCCCc-------hhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH-C
Confidence 64432211 01111367999999999999999886432 1344556666666666 5
No 147
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.04 E-value=3.3e-09 Score=93.03 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccE
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDG 116 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~ 116 (291)
.+.+++.|...+. ...|.|+|||.+-++. ..-+.|+.+|+-+ .+-+++.+||. .+|+++++.|+
T Consensus 168 ld~ii~~ik~r~~--~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~~~~V~~cDm~-~vPl~d~svDv 231 (325)
T KOG3045|consen 168 LDVIIRKIKRRPK--NIVIADFGCGEAKIAS---SERHKVHSFDLVA----------VNERVIACDMR-NVPLEDESVDV 231 (325)
T ss_pred HHHHHHHHHhCcC--ceEEEecccchhhhhh---ccccceeeeeeec----------CCCceeecccc-CCcCccCcccE
Confidence 3455666655443 6799999999987765 3448899999733 23578899995 49999999999
Q ss_pred EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
+|+..+|.- .| +..|+.+++++|++||.+++.-..........+...+...||..
T Consensus 232 aV~CLSLMg-tn-----------~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 232 AVFCLSLMG-TN-----------LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV 286 (325)
T ss_pred EEeeHhhhc-cc-----------HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee
Confidence 987544432 22 78999999999999999999765555566777999999999986
No 148
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=5.3e-09 Score=91.95 Aligned_cols=123 Identities=23% Similarity=0.236 Sum_probs=99.6
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCC
Q 043626 38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLG 108 (291)
Q Consensus 38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~ 108 (291)
..++..+.+.+ +.+|||.|.|||.++..|+.. | .+++.+|+-++.++.|.+|... +.+..+|+.+...
T Consensus 84 ~~I~~~~gi~p---g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 84 GYIVARLGISP---GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHcCCCC---CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 35666778877 889999999999999999964 3 7999999999999999998754 6677788865433
Q ss_pred CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
...||+|+.-..= .-.++..++.+|+|||.+++-. -..+|++.+...+...||..
T Consensus 161 --~~~vDav~LDmp~----------------PW~~le~~~~~Lkpgg~~~~y~--P~veQv~kt~~~l~~~g~~~ 215 (256)
T COG2519 161 --EEDVDAVFLDLPD----------------PWNVLEHVSDALKPGGVVVVYS--PTVEQVEKTVEALRERGFVD 215 (256)
T ss_pred --ccccCEEEEcCCC----------------hHHHHHHHHHHhCCCcEEEEEc--CCHHHHHHHHHHHHhcCccc
Confidence 3499999976333 2378999999999999887643 35689999999999999975
No 149
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.03 E-value=2e-09 Score=92.83 Aligned_cols=115 Identities=14% Similarity=-0.013 Sum_probs=80.1
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLG 108 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~ 108 (291)
.+.+.+++.+..... +.+|||+|||+|.++..++.++ .+++++|+++.+++.++++.. ++.++.+|+...++
T Consensus 39 ~v~e~l~~~l~~~~~--~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~ 116 (199)
T PRK10909 39 RVRETLFNWLAPVIV--DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA 116 (199)
T ss_pred HHHHHHHHHHhhhcC--CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh
Confidence 445556666543221 5699999999999998655454 799999999999999887642 46788888855443
Q ss_pred CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHH--hccCCcEEEEEEcC
Q 043626 109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYR--CLARGARAVFQIYP 163 (291)
Q Consensus 109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~--~LkpgG~lv~~~~~ 163 (291)
...++||+|+++..+.. . ....++..+.. .|.|++.+++....
T Consensus 117 ~~~~~fDlV~~DPPy~~--g----------~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 117 QPGTPHNVVFVDPPFRK--G----------LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred hcCCCceEEEECCCCCC--C----------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 23457999998855321 1 02344555544 47999999998754
No 150
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.01 E-value=4.6e-09 Score=99.66 Aligned_cols=129 Identities=17% Similarity=0.074 Sum_probs=86.3
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCC-C--CCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLG-L--RPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~-~--~~~~fD~Vis~ 120 (291)
+.+|||+|||+|.++..++..+ .++++||+|+.+++.|+++.. .++++++|+.+.+. + ..++||+||++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 5699999999999988776666 599999999999999988642 35788999855332 1 24689999987
Q ss_pred CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC---hHHHHHHHHHHHHcCCC
Q 043626 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES---VAQRELILGAAMRAGFA 182 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~---~~~~~~i~~~~~~aGF~ 182 (291)
... +.............+..++..+.++|+|||.+++...... ..-.+.+...+.++|-.
T Consensus 301 PP~--f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~ 363 (396)
T PRK15128 301 PPK--FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD 363 (396)
T ss_pred CCC--CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence 432 1111101111122356777788999999999997543321 22344555556666543
No 151
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.1e-08 Score=86.08 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=83.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCCCCCCCcccEEEECCchhh-
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGLGLRPGVVDGAISISAVQW- 125 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~- 125 (291)
+..|+|+|||||.++...+-.| +.|+|||+++.+++.++++.. ++.++++|+.. + .+.||.||.|..+.-
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~-~---~~~~dtvimNPPFG~~ 121 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSD-F---RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhh-c---CCccceEEECCCCccc
Confidence 6689999999999999999999 899999999999999999876 57999999843 2 478899999866642
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
...+| ..|+..+.+.- ..+-+++ +....+.+...+..+|+..
T Consensus 122 ~rhaD----------r~Fl~~Ale~s----~vVYsiH--~a~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 122 RRHAD----------RPFLLKALEIS----DVVYSIH--KAGSRDFVEKFAADLGGTV 163 (198)
T ss_pred cccCC----------HHHHHHHHHhh----heEEEee--ccccHHHHHHHHHhcCCeE
Confidence 22222 24554444442 3444443 3336677888888999875
No 152
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.00 E-value=6.5e-09 Score=94.01 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CcceEEEccCCCCCCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE--VEGDLLLGDMGQGLGLRPG 112 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~--~~~~~~~~D~~~~~~~~~~ 112 (291)
.+.+.+++.+.+.+ +..|||||||+|.++..|++.+.+++|+|+++.|++.++++. ..+.++++|+.+ +++..-
T Consensus 29 ~i~~~i~~~l~~~~---~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~-~~~~~~ 104 (272)
T PRK00274 29 NILDKIVDAAGPQP---GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALK-VDLSEL 104 (272)
T ss_pred HHHHHHHHhcCCCC---cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhc-CCHHHc
Confidence 56677888877765 679999999999999999999889999999999999998876 457899999844 454322
Q ss_pred cccEEEECCc
Q 043626 113 VVDGAISISA 122 (291)
Q Consensus 113 ~fD~Vis~~~ 122 (291)
.+|.||+|-.
T Consensus 105 ~~~~vv~NlP 114 (272)
T PRK00274 105 QPLKVVANLP 114 (272)
T ss_pred CcceEEEeCC
Confidence 2588998843
No 153
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.98 E-value=6.8e-09 Score=88.97 Aligned_cols=121 Identities=18% Similarity=0.231 Sum_probs=79.6
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccE
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDG 116 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~ 116 (291)
.+.+++.|.-.+. ...|.|+|||.+.++..+. .++.|...|+-.. +-.++.+|| ..+|+++++.|+
T Consensus 60 vd~iI~~l~~~~~--~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~----------n~~Vtacdi-a~vPL~~~svDv 125 (219)
T PF05148_consen 60 VDVIIEWLKKRPK--SLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP----------NPRVTACDI-ANVPLEDESVDV 125 (219)
T ss_dssp HHHHHHHHCTS-T--TS-EEEES-TT-HHHHH---S---EEEEESS-S----------STTEEES-T-TS-S--TT-EEE
T ss_pred HHHHHHHHHhcCC--CEEEEECCCchHHHHHhcc-cCceEEEeeccCC----------CCCEEEecC-ccCcCCCCceeE
Confidence 4566667664442 6799999999999997653 4588999998442 235888999 679999999999
Q ss_pred EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
||+.-+|.-. | +..++.+++++||+||.+.+.-....-...+.+...+.+.||..
T Consensus 126 ~VfcLSLMGT-n-----------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 126 AVFCLSLMGT-N-----------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKL 180 (219)
T ss_dssp EEEES---SS-------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEE
T ss_pred EEEEhhhhCC-C-----------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeE
Confidence 9987665432 2 77999999999999999998654444457788889999999985
No 154
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=8.9e-09 Score=94.57 Aligned_cols=146 Identities=22% Similarity=0.152 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc-----ceEEEc-cCCCCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE-----GDLLLG-DMGQGL 107 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~-----~~~~~~-D~~~~~ 107 (291)
..++..++++-...+ +..|||--||||.+.....-.|..++|+|++..|+.-|+.|... ..++.. |+ ..+
T Consensus 183 P~lAR~mVNLa~v~~---G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da-~~l 258 (347)
T COG1041 183 PRLARAMVNLARVKR---GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA-TNL 258 (347)
T ss_pred HHHHHHHHHHhcccc---CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc-ccC
Confidence 366777777776666 78999999999999999998999999999999999999988754 224444 87 568
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC-cEE
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG-GVV 186 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~-~~~ 186 (291)
|++..+||.|++-....- .+......-..-+..+|+++.++|++||+++|... ......+...||.- +.+
T Consensus 259 pl~~~~vdaIatDPPYGr--st~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~~~~~~~~f~v~~~~ 329 (347)
T COG1041 259 PLRDNSVDAIATDPPYGR--STKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPRHELEELGFKVLGRF 329 (347)
T ss_pred CCCCCccceEEecCCCCc--ccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------CcchhhHhhcCceEEEEE
Confidence 898889999998643321 11111111233368999999999999999999873 12234567788875 455
Q ss_pred EeCCCC
Q 043626 187 VDYPHS 192 (291)
Q Consensus 187 ~~~p~~ 192 (291)
..|.+.
T Consensus 330 ~~~~H~ 335 (347)
T COG1041 330 TMRVHG 335 (347)
T ss_pred EEeecC
Confidence 555443
No 155
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.97 E-value=1.4e-09 Score=96.23 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=74.5
Q ss_pred CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC-----CCCcccEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL-----RPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~-----~~~~fD~V 117 (291)
+.+|||||||+|.++..|+.. ..+++++|+++.+++.|+++.. .++++.+|+.+.++. ..++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 679999999999998888764 3799999999999999988753 367888888654331 14689999
Q ss_pred EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+....- ..+..++..+.++|+|||.+++.
T Consensus 149 fiDa~k--------------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 149 FVDADK--------------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EECCCH--------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 864221 12567889999999999999974
No 156
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.96 E-value=1.3e-08 Score=90.18 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=83.5
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCccc
Q 043626 38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVD 115 (291)
Q Consensus 38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD 115 (291)
..+++...+.. ..+|||||+|+|.++..+++.. .+++.+|. |.+++.+.+ ...+.++.+|+.+.+| . +|
T Consensus 90 ~~~~~~~d~~~---~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f~~~P--~--~D 160 (241)
T PF00891_consen 90 DILLEAFDFSG---FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFFDPLP--V--AD 160 (241)
T ss_dssp HHHHHHSTTTT---SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TTTEEEEES-TTTCCS--S--ES
T ss_pred hhhhccccccC---ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-ccccccccccHHhhhc--c--cc
Confidence 44555556654 5689999999999999999874 78999999 888998888 6678999999964333 3 99
Q ss_pred EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCC--cEEEEE
Q 043626 116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARG--ARAVFQ 160 (291)
Q Consensus 116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg--G~lv~~ 160 (291)
+++...+||.+.+ .....+|+++++.|+|| |++++.
T Consensus 161 ~~~l~~vLh~~~d---------~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 161 VYLLRHVLHDWSD---------EDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEEEESSGGGS-H---------HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ceeeehhhhhcch---------HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 9999999998754 44789999999999999 999984
No 157
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.96 E-value=1.6e-08 Score=95.43 Aligned_cols=129 Identities=14% Similarity=0.050 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~ 107 (291)
...+...+.+.+.... +.+|||+|||+|.++..++..+..++|+|+++.+++.|+++. .++.++.+|+...+
T Consensus 218 ~~~l~~~~~~~l~~~~---~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~ 294 (374)
T TIGR02085 218 AAQLYATARQWVREIP---VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA 294 (374)
T ss_pred HHHHHHHHHHHHHhcC---CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence 3345555555554333 469999999999999999988899999999999999998765 24688999985433
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
+.....||+||++..-..+ ...++..+. .++|++.++++..|.. ....+.. + .||.-
T Consensus 295 ~~~~~~~D~vi~DPPr~G~-------------~~~~l~~l~-~~~p~~ivyvsc~p~T--laRDl~~-L--~gy~l 351 (374)
T TIGR02085 295 TAQMSAPELVLVNPPRRGI-------------GKELCDYLS-QMAPKFILYSSCNAQT--MAKDIAE-L--SGYQI 351 (374)
T ss_pred HhcCCCCCEEEECCCCCCC-------------cHHHHHHHH-hcCCCeEEEEEeCHHH--HHHHHHH-h--cCceE
Confidence 2122469999977332111 234455554 4799999999985432 2333333 3 68875
No 158
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.94 E-value=3.3e-08 Score=86.94 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=68.9
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcce-EEEccCCC----CCCCC
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGD-LLLGDMGQ----GLGLR 110 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~-~~~~D~~~----~~~~~ 110 (291)
...+++.+.+... +..|||+|||+|.++..+++.| ..|+|||+++.|+.........+. +...|+.. .++..
T Consensus 63 L~~~l~~~~~~~~--~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 63 LKEALEEFNIDVK--NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHHhcCCCCC--CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence 3455555554332 6799999999999999999997 789999999998887444444332 33334431 11112
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
-..+|+++++ +...|..+..+|++ |.+++-+
T Consensus 141 ~~~~DvsfiS-------------------~~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 141 FATFDVSFIS-------------------LISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ceeeeEEEee-------------------hHhHHHHHHHHhCc-CeEEEEc
Confidence 2367766644 22357789999999 8877644
No 159
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.91 E-value=8.8e-09 Score=92.42 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCCCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLGLR 110 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~~~ 110 (291)
..+.+.+++.+.+.+ +..|||||||+|.++..|++.+..++|+|+++.|++.++++.. ++.++++|+.+ +++
T Consensus 15 ~~~~~~iv~~~~~~~---~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~-~~~- 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTD---GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALK-VDL- 89 (258)
T ss_pred HHHHHHHHHhcCCCC---cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEecccc-CCc-
Confidence 356778888877665 6799999999999999999999899999999999999988753 47899999843 454
Q ss_pred CCcccEEEECCchh
Q 043626 111 PGVVDGAISISAVQ 124 (291)
Q Consensus 111 ~~~fD~Vis~~~l~ 124 (291)
..||.|++|..++
T Consensus 90 -~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 -PEFNKVVSNLPYQ 102 (258)
T ss_pred -hhceEEEEcCCcc
Confidence 3589999986553
No 160
>PRK04148 hypothetical protein; Provisional
Probab=98.89 E-value=2.6e-08 Score=80.15 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=75.0
Q ss_pred HHHHHHHHhCCCCCCCCCeEEEEcCCCch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcc
Q 043626 36 LSERALELLALPDDGVPRLLLDIGCGSGL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV 114 (291)
Q Consensus 36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~f 114 (291)
+.+.+.+.+.... +.+|||||||+|. .+..|++.|+.|+++|+++..++.++++. .+++..|+.+.-.---..+
T Consensus 4 i~~~l~~~~~~~~---~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 4 IAEFIAENYEKGK---NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--LNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHHHHHhccccc---CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CeEEECcCCCCCHHHHhcC
Confidence 3344455443333 5789999999996 88899999999999999999999988774 5788999865332224679
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
|+|.++... ..+...+-.+++.+ |.-+++...
T Consensus 79 ~liysirpp--------------~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 79 KLIYSIRPP--------------RDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred CEEEEeCCC--------------HHHHHHHHHHHHHc--CCCEEEEcC
Confidence 999987433 33555555666543 555666543
No 161
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.89 E-value=1.3e-08 Score=87.51 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCchh----HHHHHHc-----C--CeEEEEeCCHHHHHHHHhcC---------C-----------------
Q 043626 52 PRLLLDIGCGSGLS----GETLSEN-----G--HQWIGLDISQSMLNIALERE---------V----------------- 94 (291)
Q Consensus 52 ~~~VLDiGcGsG~~----~~~L~~~-----g--~~v~gvDis~~ml~~a~~~~---------~----------------- 94 (291)
+.+|+-.||+||-- +..|.+. + ..++|.|||+.+|+.|++-. +
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 67999999999953 3333341 2 58999999999999997621 0
Q ss_pred -------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 95 -------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 95 -------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.+.|...|+.+ .+...+.||+|+|-.++-++.. .....++..++++|+|||.|++..
T Consensus 112 v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~---------~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP---------ETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp E-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H---------HHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred EChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH---------HHHHHHHHHHHHHcCCCCEEEEec
Confidence 05788888866 3344689999999999998843 225789999999999999999853
No 162
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.87 E-value=3e-08 Score=88.68 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLRP 111 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~~ 111 (291)
.+.+.+++.+...+ +..|||||||+|.++..|++.+..++++|+++.|++.++.+. .++.++.+|+.. +++.
T Consensus 16 ~i~~~i~~~~~~~~---~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~-~~~~- 90 (253)
T TIGR00755 16 SVIQKIVEAANVLE---GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALK-VDLP- 90 (253)
T ss_pred HHHHHHHHhcCCCC---cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhc-CChh-
Confidence 56777888877665 679999999999999999999988999999999999998775 357889999843 4442
Q ss_pred Cccc---EEEECCchh
Q 043626 112 GVVD---GAISISAVQ 124 (291)
Q Consensus 112 ~~fD---~Vis~~~l~ 124 (291)
.|| +|+++..++
T Consensus 91 -~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 -DFPKQLKVVSNLPYN 105 (253)
T ss_pred -HcCCcceEEEcCChh
Confidence 566 888875543
No 163
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=89.71 Aligned_cols=107 Identities=23% Similarity=0.326 Sum_probs=83.1
Q ss_pred CeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc----CC-cceEEEccCCCCCC--CCCCcccEEEECCch
Q 043626 53 RLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER----EV-EGDLLLGDMGQGLG--LRPGVVDGAISISAV 123 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~----~~-~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l 123 (291)
..+||||||.|.+...+|... ..++|||+....+..|... .. ++.+++.|+.+.+. +++++.|.|..++.-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 489999999999999999986 7899999999877766553 34 67889999855443 345599999999888
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
.|... +++.-+-....|++.+.+.|+|||.+.+.+-
T Consensus 130 PWpKk---RH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKK---RHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCc---cccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 88532 2222222236899999999999999999883
No 164
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.86 E-value=3.1e-08 Score=88.01 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQSMLNIALEREV------EGDLLLGDMG 104 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~ 104 (291)
..=+..++-.|.+.+ +++|||.|.|||.++..|+.. + .+|+.+|+.+..++.|++++. .+.+.+.|+.
T Consensus 26 pkD~~~I~~~l~i~p---G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 26 PKDISYILMRLDIRP---GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHHHHHTT--T---T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred CchHHHHHHHcCCCC---CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 333456777888887 899999999999999999975 3 799999999999999998763 3688899985
Q ss_pred C-CCCC-CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhc-cCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626 105 Q-GLGL-RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCL-ARGARAVFQIYPESVAQRELILGAAMRAGF 181 (291)
Q Consensus 105 ~-~~~~-~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~L-kpgG~lv~~~~~~~~~~~~~i~~~~~~aGF 181 (291)
. +++. ....+|.|+.-..-.| ..+..+.++| ++||++++-. | .-+|+......+.+.||
T Consensus 103 ~~g~~~~~~~~~DavfLDlp~Pw----------------~~i~~~~~~L~~~gG~i~~fs-P-~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLDLPDPW----------------EAIPHAKRALKKPGGRICCFS-P-CIEQVQKTVEALREHGF 164 (247)
T ss_dssp CG--STT-TTSEEEEEEESSSGG----------------GGHHHHHHHE-EEEEEEEEEE-S-SHHHHHHHHHHHHHTTE
T ss_pred cccccccccCcccEEEEeCCCHH----------------HHHHHHHHHHhcCCceEEEEC-C-CHHHHHHHHHHHHHCCC
Confidence 3 3321 1368999997654444 4677899999 8999877643 3 56899999999999999
Q ss_pred CC
Q 043626 182 AG 183 (291)
Q Consensus 182 ~~ 183 (291)
..
T Consensus 165 ~~ 166 (247)
T PF08704_consen 165 TD 166 (247)
T ss_dssp EE
T ss_pred ee
Confidence 76
No 165
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=5.4e-08 Score=83.58 Aligned_cols=129 Identities=18% Similarity=0.195 Sum_probs=93.0
Q ss_pred eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc-----CCcc-eEEEccCCCC-CC------CCCCcccEEE
Q 043626 54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER-----EVEG-DLLLGDMGQG-LG------LRPGVVDGAI 118 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~-----~~~~-~~~~~D~~~~-~~------~~~~~fD~Vi 118 (291)
+|||||||||--+..++.+. ..|.-.|+++..+...... ..++ .-+..|+... .+ +..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 59999999999999999874 7899999999875333221 1121 3345565443 22 2357999999
Q ss_pred ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE--------EcCC----------------ChHHHHHHHH
Q 043626 119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ--------IYPE----------------SVAQRELILG 174 (291)
Q Consensus 119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~--------~~~~----------------~~~~~~~i~~ 174 (291)
|+.++|-. |-.....+|..+.++|++||.|++. +-++ ....++.+..
T Consensus 108 ~~N~lHI~---------p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~ 178 (204)
T PF06080_consen 108 CINMLHIS---------PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEA 178 (204)
T ss_pred ehhHHHhc---------CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHH
Confidence 99999865 4455789999999999999999983 1111 1125778999
Q ss_pred HHHHcCCCCcEEEeCCC
Q 043626 175 AAMRAGFAGGVVVDYPH 191 (291)
Q Consensus 175 ~~~~aGF~~~~~~~~p~ 191 (291)
++.++|+.-...++-|-
T Consensus 179 lA~~~GL~l~~~~~MPA 195 (204)
T PF06080_consen 179 LAAAHGLELEEDIDMPA 195 (204)
T ss_pred HHHHCCCccCcccccCC
Confidence 99999998755555553
No 166
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.81 E-value=7.2e-09 Score=98.80 Aligned_cols=135 Identities=22% Similarity=0.269 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCC-CCCCCCeEEEEcCCCchhHHHHHHcCCeEEEE---eCCHHHHHHHHhcCCcceEEEccC-CCCCCC
Q 043626 35 KLSERALELLALP-DDGVPRLLLDIGCGSGLSGETLSENGHQWIGL---DISQSMLNIALEREVEGDLLLGDM-GQGLGL 109 (291)
Q Consensus 35 ~~~~~~lelL~~~-~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gv---Dis~~ml~~a~~~~~~~~~~~~D~-~~~~~~ 109 (291)
...+.+.+.+.+. .++.-..+||||||+|.++..|.+++.....+ |..+..++.|.++.... +.+-+ .+.+||
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa--~~~~~~s~rLPf 177 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPA--MIGVLGSQRLPF 177 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcch--hhhhhccccccC
Confidence 4555566666551 11113479999999999999999998544333 66677888888886432 22222 357899
Q ss_pred CCCcccEEEECCchh-hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-------hHHHHHHHHHHHHcCC
Q 043626 110 RPGVVDGAISISAVQ-WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES-------VAQRELILGAAMRAGF 181 (291)
Q Consensus 110 ~~~~fD~Vis~~~l~-~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~-------~~~~~~i~~~~~~aGF 181 (291)
+.++||+|.|..++- |..+. --+|-++.++|+|||+++++--|-+ ......+..++...-+
T Consensus 178 p~~~fDmvHcsrc~i~W~~~~-----------g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW 246 (506)
T PF03141_consen 178 PSNAFDMVHCSRCLIPWHPND-----------GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCW 246 (506)
T ss_pred Cccchhhhhcccccccchhcc-----------cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999988764 55441 2478899999999999999865533 1233345555555444
Q ss_pred C
Q 043626 182 A 182 (291)
Q Consensus 182 ~ 182 (291)
+
T Consensus 247 ~ 247 (506)
T PF03141_consen 247 K 247 (506)
T ss_pred H
Confidence 4
No 167
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.81 E-value=2.1e-08 Score=91.58 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGL 107 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~ 107 (291)
..+.+.+++.+.+.+ +..|||||||+|.++..|++.+..++++|+++.|++.++++. ..+.++.+|+.. .
T Consensus 22 ~~i~~~Iv~~~~~~~---~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~-~ 97 (294)
T PTZ00338 22 PLVLDKIVEKAAIKP---TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK-T 97 (294)
T ss_pred HHHHHHHHHhcCCCC---cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh-h
Confidence 356778888877765 679999999999999999999989999999999999998764 247889999843 3
Q ss_pred CCCCCcccEEEECCchhh
Q 043626 108 GLRPGVVDGAISISAVQW 125 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~ 125 (291)
+ ...||.||++..++.
T Consensus 98 ~--~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 98 E--FPYFDVCVANVPYQI 113 (294)
T ss_pred c--ccccCEEEecCCccc
Confidence 3 347899998855543
No 168
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.79 E-value=2.6e-08 Score=84.42 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC---------CCCCCCcccEEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQG---------LGLRPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~---------~~~~~~~fD~Vis 119 (291)
+..|||+||++|.++..+.+++ ..|+|+|+.+. .....+..+.+|+... ++-..+.||+|+|
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccccceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence 5899999999999999999997 89999999875 1112233334443211 1111268999999
Q ss_pred CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCC
Q 043626 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSS 193 (291)
Q Consensus 120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~ 193 (291)
-.+.....+.+........-....+..+...|+|||.+++.++...... .+...+.. .|+. +.+..|.+.
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~--~~~~~l~~-~F~~-v~~~Kp~~s 167 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE--ELIYLLKR-CFSK-VKIVKPPSS 167 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH--HHHHHHHH-HHHH-EEEEE-TTS
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH--HHHHHHHh-CCeE-EEEEECcCC
Confidence 8755443332222222223245556666788999999999887644332 34443333 4665 344444443
No 169
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.79 E-value=2.7e-08 Score=86.24 Aligned_cols=124 Identities=22% Similarity=0.277 Sum_probs=95.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcC-------CcceEEEccCCCCC-CCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALERE-------VEGDLLLGDMGQGL-GLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~-------~~~~~~~~D~~~~~-~~~~~~fD~Vis~~~ 122 (291)
+.+|||.+.|-|..+...+++|. +|+-++.++..|+.|.-|- ..++++++|+.+.+ .|.+.+||+||-.
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD-- 212 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD-- 212 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC--
Confidence 78999999999999999999996 9999999999999997653 13688999986544 5789999999943
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-----ChHHHHHHHHHHHHcCCCC
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE-----SVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~-----~~~~~~~i~~~~~~aGF~~ 183 (291)
+.+.+.....--..|..+++++|+|||+++-.+... ..+-...+...+.++||..
T Consensus 213 ------PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 213 ------PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred ------CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence 222222222223689999999999999999765422 1234567888899999973
No 170
>PLN02823 spermine synthase
Probab=98.78 E-value=2.4e-07 Score=86.10 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=88.2
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~~fD~Vis~ 120 (291)
+.+||.||+|.|.....+.+.. .++++|||++.+++.|++.+. .+.++.+|....+....++||+|++.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 6799999999999998888763 689999999999999998653 36788888766555556789999976
Q ss_pred CchhhhccccccCCchHHH--HHHHHH-HHHHhccCCcEEEEEEcCC----ChHHHHHHHHHHHHcCCCC
Q 043626 121 SAVQWLCNADKASHEPRLR--LKAFFG-SLYRCLARGARAVFQIYPE----SVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~--l~~~l~-~l~~~LkpgG~lv~~~~~~----~~~~~~~i~~~~~~aGF~~ 183 (291)
.. ++.. ..|... -..|++ .+.+.|+|||.++++..+. +......+...+.+. |..
T Consensus 184 ~~-----dp~~--~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~v-F~~ 245 (336)
T PLN02823 184 LA-----DPVE--GGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQV-FKY 245 (336)
T ss_pred CC-----Cccc--cCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHh-CCC
Confidence 32 1100 011111 246887 8999999999999886432 233455566666655 654
No 171
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.77 E-value=1.2e-07 Score=87.44 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=87.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCCc-------ceEEE-ccCCC---CCCCCCCcccEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREVE-------GDLLL-GDMGQ---GLGLRPGVVDGAI 118 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~~-------~~~~~-~D~~~---~~~~~~~~fD~Vi 118 (291)
..+|||||||+|.+...|+.. +..++|+||++.+++.|+++... +.+.. .|... .+....+.||+|+
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 579999999999888777765 58999999999999999876432 34433 23211 1112356899999
Q ss_pred ECCchhhhccccccCCc-hHHHH---------HHHHHHHHHhccCCcEEEEE-------------------EcCCChHHH
Q 043626 119 SISAVQWLCNADKASHE-PRLRL---------KAFFGSLYRCLARGARAVFQ-------------------IYPESVAQR 169 (291)
Q Consensus 119 s~~~l~~l~~~~~~~~~-p~~~l---------~~~l~~l~~~LkpgG~lv~~-------------------~~~~~~~~~ 169 (291)
||..++--......... ....+ ..|=.....++.+||.+.|. +.+ ....+
T Consensus 195 cNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~-kk~~l 273 (321)
T PRK11727 195 CNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVS-KKENL 273 (321)
T ss_pred eCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEee-ccCCH
Confidence 99665422111000000 00000 00001234556677776652 111 12367
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEee
Q 043626 170 ELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTC 204 (291)
Q Consensus 170 ~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~ 204 (291)
..+...+.+.|.....++.+... .+..|++-+.
T Consensus 274 ~~l~~~L~~~~~~~~~~~e~~qG--~~~~~~vaWs 306 (321)
T PRK11727 274 PPLYRALKKVGAVEVKTIEMAQG--QKQSRFIAWT 306 (321)
T ss_pred HHHHHHHHHcCCceEEEEEEeCC--CeeeEEEEee
Confidence 77888888888876555555444 3444555543
No 172
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.76 E-value=1.5e-07 Score=83.91 Aligned_cols=125 Identities=20% Similarity=0.158 Sum_probs=86.2
Q ss_pred CCeEEEEcCCCchhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCc----------------------------------c
Q 043626 52 PRLLLDIGCGSGLSGETLS-ENGHQWIGLDISQSMLNIALEREVE----------------------------------G 96 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~----------------------------------~ 96 (291)
+.++||||||+-..-..-+ +...+++..|.++..++..++.... -
T Consensus 57 g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk 136 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVK 136 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEE
T ss_pred CCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhc
Confidence 5699999999965532222 3457899999999888755442211 2
Q ss_pred eEEEccCCCCCCCCC-----CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE----------
Q 043626 97 DLLLGDMGQGLGLRP-----GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI---------- 161 (291)
Q Consensus 97 ~~~~~D~~~~~~~~~-----~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~---------- 161 (291)
.++.+|+.+.-|+.+ ..||+|++.+++...|. ........++++.++|||||.|++..
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~-------d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG 209 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACK-------DLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG 209 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-S-------SHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcC-------CHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence 578899977656544 35999999999999875 23448899999999999999999842
Q ss_pred ---cCCChHHHHHHHHHHHHcCCCC
Q 043626 162 ---YPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 162 ---~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
++.-.-..+.+.+.+..+||..
T Consensus 210 ~~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 210 GHKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp TEEEE---B-HHHHHHHHHHTTEEE
T ss_pred CEecccccCCHHHHHHHHHHcCCEE
Confidence 1222336778999999999975
No 173
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.74 E-value=5.7e-08 Score=82.02 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC--------CcceEEEccCCCCC--C-CCCCcccEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE--------VEGDLLLGDMGQGL--G-LRPGVVDGAI 118 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~--------~~~~~~~~D~~~~~--~-~~~~~fD~Vi 118 (291)
+.+|||||||+|..+..++.. ...|+..|.++ .++.++.+. ..+.+...|.++.. . +...+||+|+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Il 124 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVIL 124 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEE
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEE
Confidence 679999999999999999999 48999999999 777776653 22466666665432 1 2356899999
Q ss_pred ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626 119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~ 164 (291)
+.-+++.-.. ...++..+.++|+++|.+++.....
T Consensus 125 asDv~Y~~~~-----------~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 125 ASDVLYDEEL-----------FEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EES--S-GGG-----------HHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EecccchHHH-----------HHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9998875322 6789999999999999977765433
No 174
>PLN02476 O-methyltransferase
Probab=98.73 E-value=4.6e-08 Score=88.29 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=75.7
Q ss_pred CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC-----CCCcccEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL-----RPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~-----~~~~fD~V 117 (291)
+.+||||||++|.++..++.. +..++++|+++.+++.|++++. .++++.+|+.+.++- ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 679999999999999999874 4679999999999999988763 368888887554431 14689999
Q ss_pred EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+.-. +......+|..+.++|+|||.+++.
T Consensus 199 FIDa--------------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 199 FVDA--------------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EECC--------------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9531 1233678899999999999999985
No 175
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.73 E-value=1.4e-07 Score=91.29 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHh--CCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC-----cceEEEc
Q 043626 32 IQAKLSERALELL--ALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV-----EGDLLLG 101 (291)
Q Consensus 32 iq~~~~~~~lelL--~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~-----~~~~~~~ 101 (291)
+|...+..++..| ...+ +.+|||+|||+|.-+..|++.- ..++++|+++..+..++++.. ++.+...
T Consensus 95 vQd~sS~l~~~~L~~~~~p---g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~ 171 (470)
T PRK11933 95 IQEASSMLPVAALFADDNA---PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHF 171 (470)
T ss_pred EECHHHHHHHHHhccCCCC---CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3555555555666 4444 7799999999999999998762 689999999999988887653 3566677
Q ss_pred cCCCCCCCCCCcccEEEECCc----hhhhccccccCC-chH------HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHH
Q 043626 102 DMGQGLGLRPGVVDGAISISA----VQWLCNADKASH-EPR------LRLKAFFGSLYRCLARGARAVFQIYPESVAQRE 170 (291)
Q Consensus 102 D~~~~~~~~~~~fD~Vis~~~----l~~l~~~~~~~~-~p~------~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~ 170 (291)
|........++.||.|+.... =.+-.+++.... .+. ..-..+|..++++|+|||++|.++..-++++-+
T Consensus 172 D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 172 DGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred chhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 764322233568999994321 111111111110 111 112788999999999999999988876666555
Q ss_pred HHHHHHH
Q 043626 171 LILGAAM 177 (291)
Q Consensus 171 ~i~~~~~ 177 (291)
.+...+.
T Consensus 252 ~vV~~~L 258 (470)
T PRK11933 252 AVCLWLK 258 (470)
T ss_pred HHHHHHH
Confidence 5555544
No 176
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.73 E-value=5.6e-08 Score=84.25 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=74.3
Q ss_pred CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-----CCCCcccEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-----LRPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-----~~~~~fD~V 117 (291)
+.+||||||++|.++..|++. +.+++.+|+++.+.+.|++.+. .++++.+|..+.++ -..++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 569999999999999999975 5899999999999999988653 37889888754332 114689999
Q ss_pred EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+....-. ....+|..+.++|+|||.+++.
T Consensus 126 FiDa~K~--------------~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 126 FIDADKR--------------NYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEESTGG--------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEccccc--------------chhhHHHHHhhhccCCeEEEEc
Confidence 9643221 1567888899999999999995
No 177
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.72 E-value=6.3e-08 Score=88.69 Aligned_cols=97 Identities=20% Similarity=0.260 Sum_probs=71.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC----Cc--ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE----VE--GDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~----~~--~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+..|||+|||+|.++...++.| ..|++||.|.-+ +.|.+.. .+ ++++.+.+. .+.++.+..|+|||-+.=+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvE-di~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVE-DIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceE-EEecCccceeEEeehhhhH
Confidence 5799999999999999999999 799999987654 6665532 22 577888773 3444478999999988777
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAV 158 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv 158 (291)
+|.... -+..++-.=-+.|+|||.++
T Consensus 139 ~Ll~Es--------MldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYES--------MLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhh--------hhhhhhhhhhhccCCCceEc
Confidence 764211 03444444557899999765
No 178
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.72 E-value=2.2e-07 Score=76.67 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=90.6
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC---C-
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQG---L- 107 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~---~- 107 (291)
-++++++..++... +..|||+|.|+|.++..+..+| ..++++++|++......+..+...++.+|.... +
T Consensus 35 ~lA~~M~s~I~pes---glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 35 ILARKMASVIDPES---GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHHhccCccc---CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 34555555555444 6799999999999999999998 689999999999999999999988888887431 1
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
.+....||.|||.-.+--+ |...-.++++.+...|..||.++--.|+
T Consensus 112 e~~gq~~D~viS~lPll~~---------P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNF---------PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccC---------cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2456789999987444322 4444568999999999999998865544
No 179
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.71 E-value=4.9e-08 Score=85.01 Aligned_cols=95 Identities=24% Similarity=0.263 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCc------ceEEE-ccCCCCCC-CCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREVE------GDLLL-GDMGQGLG-LRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~------~~~~~-~D~~~~~~-~~~~~fD~Vis~ 120 (291)
+.+|||||++.|.++..|+.. ..+++.||+++++.+.|++++.. +.++. +|..+.+. +..++||+|+.-
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 679999999999999999965 36899999999999999998753 45666 46544333 457999999953
Q ss_pred CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
.. + .....+|..+.++|+|||.+++.
T Consensus 140 ad--------K------~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 140 AD--------K------ADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CC--------h------hhCHHHHHHHHHHhCCCcEEEEe
Confidence 21 1 12568999999999999999985
No 180
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.69 E-value=1.4e-07 Score=85.59 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=74.9
Q ss_pred CCeEEEEcCCCchh----HHHHHHc------CCeEEEEeCCHHHHHHHHhcCC---------------------------
Q 043626 52 PRLLLDIGCGSGLS----GETLSEN------GHQWIGLDISQSMLNIALEREV--------------------------- 94 (291)
Q Consensus 52 ~~~VLDiGcGsG~~----~~~L~~~------g~~v~gvDis~~ml~~a~~~~~--------------------------- 94 (291)
+.+|+-.||+||-- +..|.+. ...|+|+|||+.+|+.|++-.-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 57999999999953 3333342 2579999999999999976310
Q ss_pred ---------cceEEEccCCCCCCC-CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 95 ---------EGDLLLGDMGQGLGL-RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 95 ---------~~~~~~~D~~~~~~~-~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.+.|...|+.+. ++ ..+.||+|+|..++.|+.. .....++..+++.|+|||.|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~-~~~~~~~fD~I~cRNvliyF~~---------~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAK-QWAVPGPFDAIFCRNVMIYFDK---------TTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCC-CCccCCCcceeeHhhHHhcCCH---------HHHHHHHHHHHHHhCCCcEEEEeC
Confidence 046677777542 22 2578999999999988843 236789999999999999988754
No 181
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.69 E-value=1.6e-07 Score=86.58 Aligned_cols=144 Identities=19% Similarity=0.250 Sum_probs=96.4
Q ss_pred CCCCCCCCcccCCchhhccccccchhH---------HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--
Q 043626 4 RPELIAPPEIFYDDTEARKYTSSSRII---------DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-- 72 (291)
Q Consensus 4 ~pe~~~ppe~fy~~~~a~~Y~~~~~~~---------~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-- 72 (291)
.+....||..||++.-+.-|+.-+... .+.......++..+ +. +..|+|+|||+|.-+..|.+.
T Consensus 25 ~~~k~lp~k~~YD~~Gs~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i--~~---~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 25 GQPRTLPTLLLYDDEGLKLFEEITYSPEYYLTNDEIEILKKHSSDIAASI--PS---GSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred CCCCCCChHhhhcchHHHHHHHHHcCCccCChHHHHHHHHHHHHHHHHhc--CC---CCEEEEECCCchHHHHHHHHHHH
Confidence 455678999999988777666543322 22333333444443 23 568999999999987766643
Q ss_pred ----CCeEEEEeCCHHHHHHHHhcCC-c----c--eEEEccCCCCCCC-----CCCcccEEEEC-CchhhhccccccCCc
Q 043626 73 ----GHQWIGLDISQSMLNIALEREV-E----G--DLLLGDMGQGLGL-----RPGVVDGAISI-SAVQWLCNADKASHE 135 (291)
Q Consensus 73 ----g~~v~gvDis~~ml~~a~~~~~-~----~--~~~~~D~~~~~~~-----~~~~fD~Vis~-~~l~~l~~~~~~~~~ 135 (291)
...++++|||.++|+.+..+.. . + .-+++|..+.+.+ ......+++.. +++..+ +
T Consensus 100 ~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf--------~ 171 (319)
T TIGR03439 100 RQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNF--------S 171 (319)
T ss_pred hcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCC--------C
Confidence 2679999999999999988765 2 3 3377777554321 12345566553 344433 3
Q ss_pred hHHHHHHHHHHHHH-hccCCcEEEEEE
Q 043626 136 PRLRLKAFFGSLYR-CLARGARAVFQI 161 (291)
Q Consensus 136 p~~~l~~~l~~l~~-~LkpgG~lv~~~ 161 (291)
|.. ...||+.+.+ +|+|||.+++.+
T Consensus 172 ~~e-a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 172 RPE-AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHH-HHHHHHHHHHhhCCCCCEEEEec
Confidence 433 5689999999 999999999954
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.67 E-value=1.8e-07 Score=91.64 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCC----CCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhc-----CCcce
Q 043626 29 IIDIQAKLSERALELLALPDD----GVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALER-----EVEGD 97 (291)
Q Consensus 29 ~~~iq~~~~~~~lelL~~~~~----~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~-----~~~~~ 97 (291)
+...|....+.....+.+... .....+||||||.|.++..++... ..++|||++...+..+... ..++.
T Consensus 321 ~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~ 400 (506)
T PRK01544 321 LSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFL 400 (506)
T ss_pred CCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEE
Confidence 444566665655555543211 124689999999999999999885 8999999999877666544 23456
Q ss_pred EEEccCCCC-CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHH
Q 043626 98 LLLGDMGQG-LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAA 176 (291)
Q Consensus 98 ~~~~D~~~~-~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~ 176 (291)
++..|+... .-|+++++|.|+.++.-.|... +++.-+---..|+..++++|+|||.+.+.+- .....+.....+
T Consensus 401 ~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKk---rh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD--~~~y~~~~~~~~ 475 (506)
T PRK01544 401 LFPNNLDLILNDLPNNSLDGIYILFPDPWIKN---KQKKKRIFNKERLKILQDKLKDNGNLVFASD--IENYFYEAIELI 475 (506)
T ss_pred EEcCCHHHHHHhcCcccccEEEEECCCCCCCC---CCccccccCHHHHHHHHHhcCCCCEEEEEcC--CHHHHHHHHHHH
Confidence 676665221 1256889999999988888532 2222222236899999999999999998873 233334445555
Q ss_pred HHcC
Q 043626 177 MRAG 180 (291)
Q Consensus 177 ~~aG 180 (291)
...+
T Consensus 476 ~~~~ 479 (506)
T PRK01544 476 QQNG 479 (506)
T ss_pred HhCC
Confidence 5444
No 183
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=3.5e-08 Score=87.98 Aligned_cols=101 Identities=26% Similarity=0.335 Sum_probs=80.9
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+..+||+|||.|-.+..- -...++|+|++...+..++..... .+..+|+ ..+|++..+||.+++++++||+..
T Consensus 46 gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~-l~~p~~~~s~d~~lsiavihhlsT--- 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADA-LKLPFREESFDAALSIAVIHHLST--- 118 (293)
T ss_pred cceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCCc-eeehhhh-hcCCCCCCccccchhhhhhhhhhh---
Confidence 679999999998644321 235799999999998888766443 4777887 558999999999999999999954
Q ss_pred cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626 132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~ 164 (291)
..+-..+++++.++|+|||...+..++-
T Consensus 119 -----~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 119 -----RERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred -----HHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 3335689999999999999998877654
No 184
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.65 E-value=3.2e-07 Score=86.53 Aligned_cols=143 Identities=22% Similarity=0.143 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC-eEEEEeCCHHHHHHHHhcCC-------cceEEEccCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH-QWIGLDISQSMLNIALEREV-------EGDLLLGDMG 104 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~-~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~ 104 (291)
|......+.+.+. +.+|||+-|=||.++.+.+..|. +|++||+|...|++|++|.. .+.++++|+.
T Consensus 205 qR~~R~~l~~~~~------GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 205 QRDNRRALGELAA------GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred hHHHHHHHhhhcc------CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 4444444444443 45999999999999999999995 99999999999999999863 2578999986
Q ss_pred CCCCC---CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC---hHHHHHHHHHHHH
Q 043626 105 QGLGL---RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES---VAQRELILGAAMR 178 (291)
Q Consensus 105 ~~~~~---~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~---~~~~~~i~~~~~~ 178 (291)
+.+.- ...+||+||.... . +....+....-.+.+..++..+.++|+|||.+++...... ..-.+.+...+..
T Consensus 279 ~~l~~~~~~g~~fDlIilDPP-s-F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~ 356 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPP-S-FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAA 356 (393)
T ss_pred HHHHHHHhcCCcccEEEECCc-c-cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHh
Confidence 54432 2349999997521 1 1111122244556678889999999999999999765432 2234556666666
Q ss_pred cCCCC
Q 043626 179 AGFAG 183 (291)
Q Consensus 179 aGF~~ 183 (291)
+|...
T Consensus 357 ~~~~~ 361 (393)
T COG1092 357 AGRRA 361 (393)
T ss_pred cCCcE
Confidence 66553
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.64 E-value=8.6e-08 Score=81.39 Aligned_cols=114 Identities=24% Similarity=0.229 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--Ce---------EEEEeCCHHHHHHHHhcCCc------
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQ---------WIGLDISQSMLNIALEREVE------ 95 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~---------v~gvDis~~ml~~a~~~~~~------ 95 (291)
...++..++.+....+ +..|||--||+|.+....+..+ .. ++|+|+++.+++.|+++...
T Consensus 13 ~~~lA~~ll~la~~~~---~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRP---GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp -HHHHHHHHHHTT--T---TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CHHHHHHHHHHhCCCC---CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 3467777777776665 6799999999999887665443 33 88999999999999987642
Q ss_pred ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccC
Q 043626 96 GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLAR 153 (291)
Q Consensus 96 ~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkp 153 (291)
+.+...|+ ..+++..+++|.||++..+.--... ..+...-+..+++.+.++|++
T Consensus 90 i~~~~~D~-~~l~~~~~~~d~IvtnPPyG~r~~~---~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 90 IDFIQWDA-RELPLPDGSVDAIVTNPPYGRRLGS---KKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEEE--G-GGGGGTTSBSCEEEEE--STTSHCH---HHHHHHHHHHHHHHHHCHSTT
T ss_pred eEEEecch-hhcccccCCCCEEEECcchhhhccC---HHHHHHHHHHHHHHHHHHCCC
Confidence 57888888 4567778899999998555321110 011233357888999999999
No 186
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.63 E-value=3.7e-07 Score=83.75 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=83.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD 130 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~ 130 (291)
-...+|+|.|.|..+..+.....++-+++.....+..+.... +.+..+-+|+.+..| +-|+|++-+++||+.|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P----~~daI~mkWiLhdwtD-- 251 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP----KGDAIWMKWILHDWTD-- 251 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCC----CcCeEEEEeecccCCh--
Confidence 358999999999999988887788999999999888888877 778888899877655 3469999999999977
Q ss_pred ccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 131 KASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+.+..+|++++..|+|||.+++.
T Consensus 252 -------edcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 252 -------EDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred -------HHHHHHHHHHHHhCCCCCEEEEE
Confidence 34899999999999999999984
No 187
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.60 E-value=1.2e-06 Score=79.49 Aligned_cols=144 Identities=17% Similarity=0.105 Sum_probs=96.7
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc---------ceEEEccCCCCCCCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE---------GDLLLGDMGQGLGLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~---------~~~~~~D~~~~~~~~~~~fD~Vis~ 120 (291)
+.+||-||-|.|..+..+.++. ..++.|||++..++.|++.++. +.++..|..+.+.-...+||+||+.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 5699999999999999999986 7999999999999999987654 4667777655554334589999986
Q ss_pred CchhhhccccccCCchHHH--HHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCC
Q 043626 121 SAVQWLCNADKASHEPRLR--LKAFFGSLYRCLARGARAVFQIYPE--SVAQRELILGAAMRAGFAGGVVVDYPHSSKSR 196 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~--l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~ 196 (291)
+.-. . .|... -..|++.++++|+++|.++.+.... ..+....+...+.+. |.......++......
T Consensus 157 ~tdp-~--------gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v-f~~~~~~~~~ipt~~~ 226 (282)
T COG0421 157 STDP-V--------GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV-FSIVPPYVAPIPTYPS 226 (282)
T ss_pred CCCC-C--------CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh-ccccccceeccceecC
Confidence 4432 1 11111 2689999999999999999983211 113344555555556 6652222233333344
Q ss_pred cEEEEEeeC
Q 043626 197 KEFLVLTCG 205 (291)
Q Consensus 197 ~~~l~l~~g 205 (291)
..|-+....
T Consensus 227 g~~~f~~~s 235 (282)
T COG0421 227 GFWGFIVAS 235 (282)
T ss_pred CceEEEEee
Confidence 444444433
No 188
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.58 E-value=1.3e-06 Score=78.50 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=75.5
Q ss_pred CCeEEEEcCCCch----hHHHHHHc-------CCeEEEEeCCHHHHHHHHhcC-C------c------------------
Q 043626 52 PRLLLDIGCGSGL----SGETLSEN-------GHQWIGLDISQSMLNIALERE-V------E------------------ 95 (291)
Q Consensus 52 ~~~VLDiGcGsG~----~~~~L~~~-------g~~v~gvDis~~ml~~a~~~~-~------~------------------ 95 (291)
+.+|+-+||+||- ++..|.+. ...|+|.|||..+|+.|+.-. + +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6799999999995 33333333 267999999999999997521 1 0
Q ss_pred ---------ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 96 ---------GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 96 ---------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
+.|-..|+....+ ..+.||+|+|-.|+-++.. ..-..++..++..|+|||.|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~---------~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDE---------ETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCH---------HHHHHHHHHHHHHhCCCCEEEEcc
Confidence 4566677655443 5778999999999988743 225689999999999999999853
No 189
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.1e-07 Score=75.16 Aligned_cols=96 Identities=25% Similarity=0.357 Sum_probs=70.1
Q ss_pred cccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cc
Q 043626 22 KYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EG 96 (291)
Q Consensus 22 ~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~ 96 (291)
+|-+.+ ++...|..-+-+-...-+ +..|+|+|||.|.+....+-.+ ..++|+||.+.+|+.+..|.. ++
T Consensus 25 QY~T~p---~iAasM~~~Ih~TygdiE---gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi 98 (185)
T KOG3420|consen 25 QYPTRP---HIAASMLYTIHNTYGDIE---GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI 98 (185)
T ss_pred hCCCcH---HHHHHHHHHHHhhhcccc---CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh
Confidence 455544 233344444444444333 7799999999999997776665 789999999999999998865 37
Q ss_pred eEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 97 DLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 97 ~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+++++|+.. +-+..+.||.+|.+..+.
T Consensus 99 dlLqcdild-le~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 99 DLLQCDILD-LELKGGIFDTAVINPPFG 125 (185)
T ss_pred heeeeeccc-hhccCCeEeeEEecCCCC
Confidence 899999954 445568999999886654
No 190
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.55 E-value=1.1e-06 Score=82.78 Aligned_cols=127 Identities=15% Similarity=0.049 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~ 107 (291)
...+.+.+++.+... +..|||++||+|.++..|+.....|+|||+|+.|++.|+++.. ++.++.+|+...+
T Consensus 192 ~e~l~~~v~~~~~~~----~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 192 NEKMLEWALDATKGS----KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHhhcC----CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 345666666665432 2479999999999999999888899999999999999988642 4678988875433
Q ss_pred C-CC--------------CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHH
Q 043626 108 G-LR--------------PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELI 172 (291)
Q Consensus 108 ~-~~--------------~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i 172 (291)
+ +. ...||+|+.... .... ...++..+. ++++.++++..|.. ....+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP--------R~G~-----~~~~l~~l~---~~~~ivyvSC~p~t--larDl 329 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPP--------RAGL-----DDETLKLVQ---AYERILYISCNPET--LCENL 329 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCC--------CCCC-----cHHHHHHHH---ccCCEEEEEeCHHH--HHHHH
Confidence 2 10 125899996422 1111 124444444 37899999986632 23334
Q ss_pred HHHHHHcCCCC
Q 043626 173 LGAAMRAGFAG 183 (291)
Q Consensus 173 ~~~~~~aGF~~ 183 (291)
... .. ||.-
T Consensus 330 ~~L-~~-gY~l 338 (362)
T PRK05031 330 ETL-SQ-THKV 338 (362)
T ss_pred HHH-cC-CcEE
Confidence 433 33 7864
No 191
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.55 E-value=1.8e-06 Score=77.55 Aligned_cols=131 Identities=19% Similarity=0.102 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C---CeEEEEeCCHHHHHHHHhcCC-----cc-eEEEccCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G---HQWIGLDISQSMLNIALEREV-----EG-DLLLGDMG 104 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g---~~v~gvDis~~ml~~a~~~~~-----~~-~~~~~D~~ 104 (291)
++...++..|.... .+.+||||.||.|....-..+. . ..+...|.|+..++..++... ++ .|.++|+.
T Consensus 121 ~~i~~ai~~L~~~g--~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAf 198 (311)
T PF12147_consen 121 ELIRQAIARLREQG--RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAF 198 (311)
T ss_pred HHHHHHHHHHHhcC--CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCC
Confidence 34444455443333 2789999999999976555543 2 689999999999988776432 34 89999986
Q ss_pred CCCCC--CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHH
Q 043626 105 QGLGL--RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAA 176 (291)
Q Consensus 105 ~~~~~--~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~ 176 (291)
+.-.+ .....+++|++..++.++|. .-+...+..++++|.|||.++.+--|.+ .|+++|...+
T Consensus 199 d~~~l~~l~p~P~l~iVsGL~ElF~Dn--------~lv~~sl~gl~~al~pgG~lIyTgQPwH-PQle~IAr~L 263 (311)
T PF12147_consen 199 DRDSLAALDPAPTLAIVSGLYELFPDN--------DLVRRSLAGLARALEPGGYLIYTGQPWH-PQLEMIARVL 263 (311)
T ss_pred CHhHhhccCCCCCEEEEecchhhCCcH--------HHHHHHHHHHHHHhCCCcEEEEcCCCCC-cchHHHHHHH
Confidence 53222 23457999999988888662 2256789999999999999999876655 3444444443
No 192
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.54 E-value=4.4e-07 Score=77.72 Aligned_cols=99 Identities=17% Similarity=0.073 Sum_probs=69.8
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-C-CCC-cccEEEECC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-L-RPG-VVDGAISIS 121 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-~-~~~-~fD~Vis~~ 121 (291)
+.+|||++||+|.++..++.+| ..+++||+++.+++.++++.. .+.++.+|+...+. + ... .||+|+...
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 6799999999999999999998 589999999999998887642 35788888744332 1 122 377777654
Q ss_pred chhhhccccccCCchHHHHHHHHHHH--HHhccCCcEEEEEEc
Q 043626 122 AVQWLCNADKASHEPRLRLKAFFGSL--YRCLARGARAVFQIY 162 (291)
Q Consensus 122 ~l~~l~~~~~~~~~p~~~l~~~l~~l--~~~LkpgG~lv~~~~ 162 (291)
.+.. . . ...++..+ ..+|+++|.+++...
T Consensus 130 Py~~--~-------~---~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 130 PFFN--G-------A---LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CCCC--C-------c---HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 3321 0 0 23334433 347899999988764
No 193
>PRK00536 speE spermidine synthase; Provisional
Probab=98.53 E-value=1.4e-06 Score=78.11 Aligned_cols=116 Identities=10% Similarity=-0.104 Sum_probs=85.2
Q ss_pred hCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc---------ceEEEccCCCCCCCCCCcc
Q 043626 44 LALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE---------GDLLLGDMGQGLGLRPGVV 114 (291)
Q Consensus 44 L~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~---------~~~~~~D~~~~~~~~~~~f 114 (291)
+.++. +.+||=||.|-|.....++++..+|+.|||++.+++.+++.++. +.++. .+ .....++|
T Consensus 68 ~~h~~---pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~---~~~~~~~f 140 (262)
T PRK00536 68 CTKKE---LKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL---LDLDIKKY 140 (262)
T ss_pred hhCCC---CCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh---hhccCCcC
Confidence 45555 78999999999999999999877999999999999999996654 23332 11 11123689
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--ChHHHHHHHHHHHHcCCCC
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--SVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~~~i~~~~~~aGF~~ 183 (291)
|+||+-+.+ -..|++.++++|+|||.++.|...- ..+....+...+.+ .|..
T Consensus 141 DVIIvDs~~----------------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~ 194 (262)
T PRK00536 141 DLIICLQEP----------------DIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSI 194 (262)
T ss_pred CEEEEcCCC----------------ChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCc
Confidence 999987532 2478899999999999999975321 24445566666665 6863
No 194
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.53 E-value=5.2e-07 Score=79.98 Aligned_cols=84 Identities=23% Similarity=0.282 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLG 108 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~ 108 (291)
.+...+++...+.+ +..|||||.|||++|..|.+.|..|+++++++.|+....++... .+++++|...
T Consensus 45 ~v~~~I~~ka~~k~---tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK--- 118 (315)
T KOG0820|consen 45 LVIDQIVEKADLKP---TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK--- 118 (315)
T ss_pred HHHHHHHhccCCCC---CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc---
Confidence 44556666666776 78999999999999999999999999999999999999887653 4778888733
Q ss_pred CCCCcccEEEECCchh
Q 043626 109 LRPGVVDGAISISAVQ 124 (291)
Q Consensus 109 ~~~~~fD~Vis~~~l~ 124 (291)
.+..-||+||++-..+
T Consensus 119 ~d~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 119 TDLPRFDGCVSNLPYQ 134 (315)
T ss_pred CCCcccceeeccCCcc
Confidence 2234799999974443
No 195
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.52 E-value=7.4e-07 Score=72.17 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=70.7
Q ss_pred eEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCC-CcccEEEECCchhhhccccccCCchHHHHHHHHHHH
Q 043626 75 QWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRP-GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSL 147 (291)
Q Consensus 75 ~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~-~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l 147 (291)
+|+|+||.+.+++.++++.. .+.+++.+-.....+-+ +++|+|+.| |.||+.+|+....-...-...++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 58999999999999988764 26777766533222223 589999987 9999999988876666677899999
Q ss_pred HHhccCCcEEEEEEcCCCh---HHHHHHHHHHHHcC
Q 043626 148 YRCLARGARAVFQIYPESV---AQRELILGAAMRAG 180 (291)
Q Consensus 148 ~~~LkpgG~lv~~~~~~~~---~~~~~i~~~~~~aG 180 (291)
..+|+|||.+++..|+.++ ++.+.+.+++...-
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 9999999999999999665 35555666665543
No 196
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.51 E-value=4e-07 Score=81.08 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=74.9
Q ss_pred CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCC------CCCcccE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGL------RPGVVDG 116 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~------~~~~fD~ 116 (291)
+.+|||||+++|.++..++.. +.+++.+|+++...+.|++.+. .++++.+|..+.++- ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 569999999999999999864 4799999999999999988663 378888887554432 1368999
Q ss_pred EEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 117 AISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 117 Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
|+.-. + ......+|..+.++|+|||.+++.
T Consensus 160 iFiDa--------d------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 160 IFVDA--------D------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEecC--------C------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99531 1 122567888899999999999984
No 197
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.50 E-value=2.3e-06 Score=76.85 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=87.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh--cC---Cc-------------------------------
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE--RE---VE------------------------------- 95 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~--~~---~~------------------------------- 95 (291)
..+||--|||.|.++..++.+|..+.|.|.|--|+-...- +. .+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 5699999999999999999999999999999999754321 10 00
Q ss_pred ---------ceEEEccCCCCCCCC--CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-
Q 043626 96 ---------GDLLLGDMGQGLGLR--PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP- 163 (291)
Q Consensus 96 ---------~~~~~~D~~~~~~~~--~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~- 163 (291)
..+..+|+.+..+-. .++||+|++.+.+.-..| +...|..++++|||||..+ .++|
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N-----------i~~Yi~tI~~lLkpgG~WI-N~GPL 204 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN-----------IIEYIETIEHLLKPGGYWI-NFGPL 204 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH-----------HHHHHHHHHHHhccCCEEE-ecCCc
Confidence 234455553332222 379999999877765555 8899999999999999555 3322
Q ss_pred ---CC----------hHHHHHHHHHHHHcCCCC
Q 043626 164 ---ES----------VAQRELILGAAMRAGFAG 183 (291)
Q Consensus 164 ---~~----------~~~~~~i~~~~~~aGF~~ 183 (291)
.. .-..++|..++.+.||+.
T Consensus 205 lyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~ 237 (270)
T PF07942_consen 205 LYHFEPMSIPNEMSVELSLEEIKELIEKLGFEI 237 (270)
T ss_pred cccCCCCCCCCCcccCCCHHHHHHHHHHCCCEE
Confidence 11 124678999999999985
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.46 E-value=4.9e-07 Score=85.53 Aligned_cols=108 Identities=16% Similarity=0.064 Sum_probs=77.6
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL 107 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~ 107 (291)
.+...+++.+....+ ..+|||++||+|..+..++... ..|+++|+++.+++.++++.. .+.++.+|+...+
T Consensus 43 dl~~~v~~~~~~~~~--~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 43 DISVLVLRAFGPKLP--RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred hHHHHHHHHHHhhcC--CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 445555555532211 3589999999999999998753 489999999999999987652 2457888874333
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
.. .+.||+|++... .....++..+...+++||.++++
T Consensus 121 ~~-~~~fD~V~lDP~---------------Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 121 HE-ERKFDVVDIDPF---------------GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred hh-cCCCCEEEECCC---------------CCcHHHHHHHHHHhcCCCEEEEE
Confidence 21 467999997631 11346778877889999999994
No 199
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.45 E-value=1.2e-06 Score=84.48 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=81.4
Q ss_pred CCcccCCchhhccccccc----hhHHHHHHHHHHHHHHhCCCCCC-CCCeEEEEcCCCchhHHHHHHcC------CeEEE
Q 043626 10 PPEIFYDDTEARKYTSSS----RIIDIQAKLSERALELLALPDDG-VPRLLLDIGCGSGLSGETLSENG------HQWIG 78 (291)
Q Consensus 10 ppe~fy~~~~a~~Y~~~~----~~~~iq~~~~~~~lelL~~~~~~-~~~~VLDiGcGsG~~~~~L~~~g------~~v~g 78 (291)
|..-.-+.-++..|.... +...++..+.+.+.+........ ....|||||||+|.+....++.+ .+|++
T Consensus 140 PLqPl~dnL~s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyA 219 (448)
T PF05185_consen 140 PLQPLMDNLESQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYA 219 (448)
T ss_dssp ---TTTS---HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEE
T ss_pred CCCCchhhhccccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEE
Confidence 333344445566665532 23445555655555655433210 13589999999999987776654 69999
Q ss_pred EeCCHHHHHHHHhc----C--CcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhcc
Q 043626 79 LDISQSMLNIALER----E--VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLA 152 (291)
Q Consensus 79 vDis~~ml~~a~~~----~--~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lk 152 (291)
|+-++.++..++.+ . ..+.++.+|+.+ +.. +..+|+|||=..=..+++. .....+....+.|+
T Consensus 220 VEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~-v~l-pekvDIIVSElLGsfg~nE---------l~pE~Lda~~rfLk 288 (448)
T PF05185_consen 220 VEKNPNAVVTLQKRVNANGWGDKVTVIHGDMRE-VEL-PEKVDIIVSELLGSFGDNE---------LSPECLDAADRFLK 288 (448)
T ss_dssp EESSTHHHHHHHHHHHHTTTTTTEEEEES-TTT-SCH-SS-EEEEEE---BTTBTTT---------SHHHHHHHGGGGEE
T ss_pred EcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccC-CCC-CCceeEEEEeccCCccccc---------cCHHHHHHHHhhcC
Confidence 99999877655332 1 348999999954 432 4599999985332233331 13456788889999
Q ss_pred CCcEEE
Q 043626 153 RGARAV 158 (291)
Q Consensus 153 pgG~lv 158 (291)
|||.++
T Consensus 289 p~Gi~I 294 (448)
T PF05185_consen 289 PDGIMI 294 (448)
T ss_dssp EEEEEE
T ss_pred CCCEEe
Confidence 999876
No 200
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.45 E-value=2.6e-06 Score=66.82 Aligned_cols=96 Identities=30% Similarity=0.407 Sum_probs=70.3
Q ss_pred EEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC--c---ceEEEccCCC-CCCCCC-CcccEEEECCchh
Q 043626 55 LLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV--E---GDLLLGDMGQ-GLGLRP-GVVDGAISISAVQ 124 (291)
Q Consensus 55 VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~--~---~~~~~~D~~~-~~~~~~-~~fD~Vis~~~l~ 124 (291)
+||+|||+|... .+.... ..++|+|+++.++..+..... . +.++..|... .+++.. ..||++.+...++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 444433 489999999999998655432 1 4677777644 367766 4899994444444
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
|. + ....+..+.+.|+|+|.+++....
T Consensus 131 ~~-~-----------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 131 LL-P-----------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred cC-C-----------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 33 2 457899999999999999987654
No 201
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.9e-06 Score=82.68 Aligned_cols=142 Identities=23% Similarity=0.237 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCC
Q 043626 31 DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQ 105 (291)
Q Consensus 31 ~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~ 105 (291)
.+...|.+.+++.+...+ ..+|||+=||.|.++..|++....|+|+|+++.+++.|+++.. ++.|..++..+
T Consensus 276 ~~~ekl~~~a~~~~~~~~---~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~ 352 (432)
T COG2265 276 AVAEKLYETALEWLELAG---GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHHHhhcC---CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence 345688999999998765 6799999999999999999999999999999999999988653 36788888754
Q ss_pred CCCC--CCCcccEEEECCchhhhccccccCCchHHHHH-HHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626 106 GLGL--RPGVVDGAISISAVQWLCNADKASHEPRLRLK-AFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA 182 (291)
Q Consensus 106 ~~~~--~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~-~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~ 182 (291)
..+- ....+|.||.. + |+..+. .+++.+. -++|-..++++. |+..+..=...+...|+.
T Consensus 353 ~~~~~~~~~~~d~VvvD--------P------PR~G~~~~~lk~l~-~~~p~~IvYVSC---NP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 353 FTPAWWEGYKPDVVVVD--------P------PRAGADREVLKQLA-KLKPKRIVYVSC---NPATLARDLAILASTGYE 414 (432)
T ss_pred HhhhccccCCCCEEEEC--------C------CCCCCCHHHHHHHH-hcCCCcEEEEeC---CHHHHHHHHHHHHhCCeE
Confidence 3332 23578999953 2 222243 4454444 457888899988 555555556667777763
Q ss_pred C---cEEEeCCCCC
Q 043626 183 G---GVVVDYPHSS 193 (291)
Q Consensus 183 ~---~~~~~~p~~~ 193 (291)
- ..+--||++.
T Consensus 415 i~~v~~~DmFP~T~ 428 (432)
T COG2265 415 IERVQPFDMFPHTH 428 (432)
T ss_pred EEEEEEeccCCCcc
Confidence 2 2222356663
No 202
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.45 E-value=1.3e-07 Score=80.52 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCC-CCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCC
Q 043626 35 KLSERALELLALP-DDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQG 106 (291)
Q Consensus 35 ~~~~~~lelL~~~-~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~ 106 (291)
.+.+.+.+.|... - .+.++||+.||||.++...+.+| ..|+.||.++..+...+++... +.++..|....
T Consensus 27 rvrealFniL~~~~~--~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 27 RVREALFNILQPRNL--EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHHHHHCH-H--TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred HHHHHHHHHhccccc--CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence 4556666666543 2 17899999999999999999998 7999999999999999887642 56778885433
Q ss_pred CC-C--CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHH--HhccCCcEEEEEEcCC
Q 043626 107 LG-L--RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLY--RCLARGARAVFQIYPE 164 (291)
Q Consensus 107 ~~-~--~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~--~~LkpgG~lv~~~~~~ 164 (291)
+. . ....||+|++......-. .+..++..+. .+|+++|.+++.....
T Consensus 105 l~~~~~~~~~fDiIflDPPY~~~~-----------~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPYAKGL-----------YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHCTS-EEEEEE--STTSCH-----------HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHhhcccCCCceEEEECCCcccch-----------HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 32 1 367999999874443210 0245666666 7899999999987543
No 203
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.43 E-value=5.6e-06 Score=73.79 Aligned_cols=123 Identities=19% Similarity=0.087 Sum_probs=86.7
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC---------cceEEEccCCCCCCCCCC-cccEEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV---------EGDLLLGDMGQGLGLRPG-VVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~---------~~~~~~~D~~~~~~~~~~-~fD~Vis 119 (291)
+.+||=||-|.|.....+.++. ..+++|||++.+++.|++.++ .+.++..|....+.-... .||+||+
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 6799999999999999999875 789999999999999988543 357888886444433344 8999997
Q ss_pred CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCC
Q 043626 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGF 181 (291)
Q Consensus 120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF 181 (291)
...-..-+. +..--..|++.+.++|+|||.++++... ........+...+.....
T Consensus 157 D~~dp~~~~-------~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 157 DLTDPDGPA-------PNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp ESSSTTSCG-------GGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred eCCCCCCCc-------ccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 533211110 0011258999999999999999998632 344556666776666644
No 204
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.42 E-value=3.8e-06 Score=78.78 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~ 107 (291)
...|.+.+++.+... +..|||+|||+|.++..|+.....|+|||+++.|++.|+++.. ++.++.+|+...+
T Consensus 183 ~~~l~~~v~~~~~~~----~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~ 258 (353)
T TIGR02143 183 NIKMLEWACEVTQGS----KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFT 258 (353)
T ss_pred HHHHHHHHHHHhhcC----CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHH
Confidence 346677777776533 2369999999999999999888899999999999999998652 3678888875433
Q ss_pred C-------C---C-----CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHH
Q 043626 108 G-------L---R-----PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELI 172 (291)
Q Consensus 108 ~-------~---~-----~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i 172 (291)
+ + . ...||+|+.... .... ...++..+. +|++.++++..|.. ....+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--------R~G~-----~~~~l~~l~---~~~~ivYvsC~p~t--laRDl 320 (353)
T TIGR02143 259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPP--------RAGL-----DPDTCKLVQ---AYERILYISCNPET--LKANL 320 (353)
T ss_pred HHHhhccccccccccccccCCCCEEEECCC--------CCCC-----cHHHHHHHH---cCCcEEEEEcCHHH--HHHHH
Confidence 2 1 0 123798885421 1111 124444443 47999999985532 33344
Q ss_pred HHHHHHcCCCC--cEEEe-CCCCC
Q 043626 173 LGAAMRAGFAG--GVVVD-YPHSS 193 (291)
Q Consensus 173 ~~~~~~aGF~~--~~~~~-~p~~~ 193 (291)
.. +. .||.- ...+| ||++.
T Consensus 321 ~~-L~-~~Y~l~~v~~~DmFP~T~ 342 (353)
T TIGR02143 321 EQ-LS-ETHRVERFALFDQFPYTH 342 (353)
T ss_pred HH-Hh-cCcEEEEEEEcccCCCCC
Confidence 43 32 34654 22233 46653
No 205
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-06 Score=74.85 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=80.2
Q ss_pred HHHHHHHHhC--CCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCc--------------
Q 043626 36 LSERALELLA--LPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVE-------------- 95 (291)
Q Consensus 36 ~~~~~lelL~--~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~-------------- 95 (291)
|-..+++.|. +.+ +...||+|.|||.++..++.. |...+|||.-+..++.++++...
T Consensus 68 mha~~le~L~~~L~p---G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 68 MHATALEYLDDHLQP---GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHHHHhhcc---CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 4445566665 555 789999999999998877743 45569999999999999886532
Q ss_pred -ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626 96 -GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES 165 (291)
Q Consensus 96 -~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~ 165 (291)
..++.+|.....+ ....||.|.+-.+.+ ..-+.+...|++||++++-..+..
T Consensus 145 ~l~ivvGDgr~g~~-e~a~YDaIhvGAaa~-----------------~~pq~l~dqL~~gGrllip~~~~~ 197 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYA-EQAPYDAIHVGAAAS-----------------ELPQELLDQLKPGGRLLIPVGQDG 197 (237)
T ss_pred ceEEEeCCccccCC-ccCCcceEEEccCcc-----------------ccHHHHHHhhccCCeEEEeecccC
Confidence 4677888644333 467899999875543 334567888999999999876543
No 206
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.9e-05 Score=68.02 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCCCCcccEEEECC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLRPGVVDGAISIS 121 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~~~~fD~Vis~~ 121 (291)
+..|+||||-+|.+++.+++.. ..|+|+|+.|- +-.+.+.++++|+...- .+....+|+|+|-.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence 7899999999999999999874 45999999774 22345888999986532 12344579999876
Q ss_pred chhhhccccccCCchH--HHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626 122 AVQWLCNADKASHEPR--LRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS 192 (291)
Q Consensus 122 ~l~~l~~~~~~~~~p~--~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~ 192 (291)
+..---. ...+++. .-....+.-+..+|+|||.+++..+.... .+.+...+ +..|.. +.+.-|.+
T Consensus 120 ap~~~g~--~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~--~~~~l~~~-~~~F~~-v~~~KP~a 186 (205)
T COG0293 120 APNTSGN--RSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED--FEDLLKAL-RRLFRK-VKIFKPKA 186 (205)
T ss_pred CCCcCCC--ccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC--HHHHHHHH-HHhhce-eEEecCcc
Confidence 6510000 0001111 11245566677899999999997554321 12233332 233776 44444444
No 207
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.38 E-value=7.1e-07 Score=81.37 Aligned_cols=83 Identities=20% Similarity=0.240 Sum_probs=65.7
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLG 108 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~ 108 (291)
-|.+.+++.|...+ +..+||.+||.|..+..+++.. ..|+|+|.++.|++.|+++.. .+.++++|+.+...
T Consensus 6 Vll~Evl~~L~~~p---g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 6 VLLDEVVDALAIKP---DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE 82 (296)
T ss_pred ccHHHHHHhhCCCC---CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence 46788899988765 6799999999999999999874 789999999999999988763 47788888754221
Q ss_pred CCC---CcccEEEEC
Q 043626 109 LRP---GVVDGAISI 120 (291)
Q Consensus 109 ~~~---~~fD~Vis~ 120 (291)
..+ .++|+|++.
T Consensus 83 ~l~~~~~~vDgIl~D 97 (296)
T PRK00050 83 VLAEGLGKVDGILLD 97 (296)
T ss_pred HHHcCCCccCEEEEC
Confidence 111 278998875
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.37 E-value=2.4e-06 Score=78.50 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=90.0
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHH---------cCCeEEEEeCCHHHHHHHHhcCC-------cceE
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE---------NGHQWIGLDISQSMLNIALEREV-------EGDL 98 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~---------~g~~v~gvDis~~ml~~a~~~~~-------~~~~ 98 (291)
.+++.+++++.... +.+|||.+||+|.+...+.+ ....++|+|+++.++..|..+.. ...+
T Consensus 33 ~i~~l~~~~~~~~~---~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 33 EIVDLMVKLLNPKK---GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHTT-T---TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHhhhhccc---cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 45666777775554 66899999999998877765 34789999999999998876431 1246
Q ss_pred EEccCCCCCCCC-CCcccEEEECCchhhh--cccccc---------CCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC-
Q 043626 99 LLGDMGQGLGLR-PGVVDGAISISAVQWL--CNADKA---------SHEPRLRLKAFFGSLYRCLARGARAVFQIYPES- 165 (291)
Q Consensus 99 ~~~D~~~~~~~~-~~~fD~Vis~~~l~~l--~~~~~~---------~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~- 165 (291)
..+|......+. ...||+||++..+.-. .+.... ...... -..|+..+.+.|++||++++.+...-
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L 188 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNA-EYAFIEHALSLLKPGGRAAIILPNGFL 188 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEH-HHHHHHHHHHTEEEEEEEEEEEEHHHH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccch-hhhhHHHHHhhcccccceeEEecchhh
Confidence 777764332333 5789999999655422 111000 001112 23588999999999999888663211
Q ss_pred --hHHHHHHHHHHHHcCCCCcEEEeCCC
Q 043626 166 --VAQRELILGAAMRAGFAGGVVVDYPH 191 (291)
Q Consensus 166 --~~~~~~i~~~~~~aGF~~~~~~~~p~ 191 (291)
......+.+.+.+.+.-. .++..|.
T Consensus 189 ~~~~~~~~iR~~ll~~~~i~-aVI~Lp~ 215 (311)
T PF02384_consen 189 FSSSSEKKIRKYLLENGYIE-AVISLPS 215 (311)
T ss_dssp HGSTHHHHHHHHHHHHEEEE-EEEE--T
T ss_pred hccchHHHHHHHHHhhchhh-EEeeccc
Confidence 113345666666665433 5566654
No 209
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.37 E-value=1.8e-06 Score=78.37 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=77.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCC--CCCCcccEEEECC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLG--LRPGVVDGAISIS 121 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~--~~~~~fD~Vis~~ 121 (291)
+.+|||+-|=||.++...+..| .+|++||+|..++++++++.. .+.++..|+.+.+. -..+.||+||+..
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 5699999999999999988888 689999999999999998742 35788888754332 1246999999863
Q ss_pred chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~ 164 (291)
.- +. ++...-.+.+..++..+.++|+|||.+++.....
T Consensus 204 Ps-F~----k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 204 PS-FA----KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp SS-EE----SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CC-CC----CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 21 11 2233445668889999999999999998876543
No 210
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=2.7e-06 Score=75.88 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCCC
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLRP 111 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~~ 111 (291)
.+.+++++.....+ +..|||||+|.|.+|..|++.+..|+++++++.++...++.. .+..++.+|+.. .+++.
T Consensus 17 ~v~~kIv~~a~~~~---~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk-~d~~~ 92 (259)
T COG0030 17 NVIDKIVEAANISP---GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALK-FDFPS 92 (259)
T ss_pred HHHHHHHHhcCCCC---CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhc-Ccchh
Confidence 45778888888776 679999999999999999999999999999999999999886 347889999843 44432
Q ss_pred C-cccEEEEC
Q 043626 112 G-VVDGAISI 120 (291)
Q Consensus 112 ~-~fD~Vis~ 120 (291)
- .++.||+|
T Consensus 93 l~~~~~vVaN 102 (259)
T COG0030 93 LAQPYKVVAN 102 (259)
T ss_pred hcCCCEEEEc
Confidence 2 67899988
No 211
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.2e-05 Score=68.72 Aligned_cols=130 Identities=22% Similarity=0.213 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEE-EccCCCCCC--CCCC
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLL-LGDMGQGLG--LRPG 112 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~-~~D~~~~~~--~~~~ 112 (291)
...+++.+.+... +..+||||+.||.++..+.+.| .+|+|+|.....+.+-.++.+.+..+ ..++....+ | .+
T Consensus 67 L~~ale~F~l~~k--~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~ 143 (245)
T COG1189 67 LEKALEEFELDVK--GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TE 143 (245)
T ss_pred HHHHHHhcCcCCC--CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-cc
Confidence 4566777777664 7899999999999999999998 89999999999888887776664333 334422111 2 23
Q ss_pred cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC-------------------ChHHHHHHH
Q 043626 113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE-------------------SVAQRELIL 173 (291)
Q Consensus 113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~-------------------~~~~~~~i~ 173 (291)
..|+|+|--++-. +..+|..+..+|++++.+++-+-|. ...-...+.
T Consensus 144 ~~d~~v~DvSFIS--------------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 144 KPDLIVIDVSFIS--------------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred CCCeEEEEeehhh--------------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHH
Confidence 6788988643322 6788999999999999988743221 122456778
Q ss_pred HHHHHcCCCC
Q 043626 174 GAAMRAGFAG 183 (291)
Q Consensus 174 ~~~~~aGF~~ 183 (291)
..+...||..
T Consensus 210 ~~~~~~g~~~ 219 (245)
T COG1189 210 NFAKELGFQV 219 (245)
T ss_pred HHHhhcCcEE
Confidence 8888889986
No 212
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.33 E-value=9e-06 Score=69.29 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=83.4
Q ss_pred eEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHh-----cCCcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626 54 LLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALE-----REVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL 126 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~-----~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l 126 (291)
+|+|||+|.|.-|..|+=. ...++.+|.+..-+...+. ...++.+++..+++ +....+||+|+|-.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~--~~~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE--PEYRESFDVVTARAVAP-- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH--TTTTT-EEEEEEESSSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc--cccCCCccEEEeehhcC--
Confidence 8999999999988888754 4789999999976654443 23458889988855 44578999999875543
Q ss_pred ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
+..++..+..+|++||.+++.-.+...++++.....+...|...
T Consensus 127 -------------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 127 -------------LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp -------------HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred -------------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 56788889999999999999887776677777766666555543
No 213
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.31 E-value=1.7e-06 Score=74.61 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCchhHHHHHH--cCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
+..|||+.||.|.++..++. .+..|+++|++|..++.++++.. .+..+++|..+.++ .+.||-|+++..-
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim~lp~ 179 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIMNLPE 179 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--TS
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEECChH
Confidence 67999999999999999998 56889999999999998877542 25788999855444 7899999987332
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAV 158 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv 158 (291)
. ...|+..+..++++||.+.
T Consensus 180 ~---------------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 S---------------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S---------------GGGGHHHHHHHEEEEEEEE
T ss_pred H---------------HHHHHHHHHHHhcCCcEEE
Confidence 2 1267888999999999875
No 214
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.30 E-value=5.4e-06 Score=75.55 Aligned_cols=97 Identities=22% Similarity=0.272 Sum_probs=68.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+..|||+|||+|.++...+..| .+|++|+-| .|.+.|+.... .+.++.+.+++ +.+ ++..|+|||-..-.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEd-ieL-PEk~DviISEPMG~ 254 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIED-IEL-PEKVDVIISEPMGY 254 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccc-ccC-chhccEEEeccchh
Confidence 5689999999999999999998 799999985 57777776432 25677776633 333 57899999865444
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
-|-| .+.....-...+.|+|.|..+-+
T Consensus 255 mL~N---------ERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 255 MLVN---------ERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhh---------HHHHHHHHHHHhhcCCCCcccCc
Confidence 4433 11222223456999999987754
No 215
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=5e-05 Score=71.28 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC----CeEEEEeCCHHHHHHHHhcCCc-----ceEEEcc
Q 043626 32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG----HQWIGLDISQSMLNIALEREVE-----GDLLLGD 102 (291)
Q Consensus 32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g----~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D 102 (291)
+|..-+..+...|+..+ +.+|||++++.|.-|.+|++.. ..|+++|+++.-+....++... +.++..|
T Consensus 140 vQd~sS~l~a~~L~p~p---ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d 216 (355)
T COG0144 140 VQDEASQLPALVLDPKP---GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKD 216 (355)
T ss_pred EcCHHHHHHHHHcCCCC---cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecc
Confidence 45555555556666655 7899999999999999999863 4579999999988887776532 4567777
Q ss_pred CCCCCC--CCCCcccEEEECCc---hhhh-ccccccCCchHH-------HHHHHHHHHHHhccCCcEEEEEEcCCChHHH
Q 043626 103 MGQGLG--LRPGVVDGAISISA---VQWL-CNADKASHEPRL-------RLKAFFGSLYRCLARGARAVFQIYPESVAQR 169 (291)
Q Consensus 103 ~~~~~~--~~~~~fD~Vis~~~---l~~l-~~~~~~~~~p~~-------~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~ 169 (291)
...... ...+.||.|+.-.. ..-+ .+++........ -..++|..+.++|||||.++.++..-.+++-
T Consensus 217 ~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eEN 296 (355)
T COG0144 217 ARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEEN 296 (355)
T ss_pred cccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcC
Confidence 533221 12235999996421 1111 122222211111 1367899999999999999998877555554
Q ss_pred HHHHHHHHHc
Q 043626 170 ELILGAAMRA 179 (291)
Q Consensus 170 ~~i~~~~~~a 179 (291)
+.....+.+.
T Consensus 297 E~vV~~~L~~ 306 (355)
T COG0144 297 EEVVERFLER 306 (355)
T ss_pred HHHHHHHHHh
Confidence 4454444433
No 216
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=2.1e-05 Score=72.85 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCe-EEEEeCCHHHHHHHHhcCC-----c-ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQ-WIGLDISQSMLNIALEREV-----E-GDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~-v~gvDis~~ml~~a~~~~~-----~-~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+..|||.-||.|.++..++..|.. |+++||+|.+++.++++.. . +..+++|..+ +....+.||-|+++....
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~re-v~~~~~~aDrIim~~p~~ 267 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE-VAPELGVADRIIMGLPKS 267 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHH-hhhccccCCEEEeCCCCc
Confidence 569999999999999999999954 9999999999999988753 1 6789999844 443348899999874431
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChH----HHHHHHHHHHHcCCCC
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVA----QRELILGAAMRAGFAG 183 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~----~~~~i~~~~~~aGF~~ 183 (291)
-..|+..+.+++++||.+.+........ ....+...+.+.|+..
T Consensus 268 ---------------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 268 ---------------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred ---------------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence 2478888999999999988865443333 4567788888887753
No 217
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.23 E-value=9.8e-07 Score=75.35 Aligned_cols=128 Identities=15% Similarity=0.200 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626 51 VPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD 130 (291)
Q Consensus 51 ~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~ 130 (291)
++.++||+|+|.|-++..++....+|++.+.|..|....+...-++ ..-+ +.+. .+-.||+|.|...+.-..+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynV---l~~~-ew~~-t~~k~dli~clNlLDRc~~-- 184 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNV---LTEI-EWLQ-TDVKLDLILCLNLLDRCFD-- 184 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCce---eeeh-hhhh-cCceeehHHHHHHHHhhcC--
Confidence 3579999999999999999999889999999999999988764432 1111 1110 1236899999888875444
Q ss_pred ccCCchHHHHHHHHHHHHHhccC-CcEEEEEE------c-----------CC---------ChHHHHHHHHHHHHcCCCC
Q 043626 131 KASHEPRLRLKAFFGSLYRCLAR-GARAVFQI------Y-----------PE---------SVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 131 ~~~~~p~~~l~~~l~~l~~~Lkp-gG~lv~~~------~-----------~~---------~~~~~~~i~~~~~~aGF~~ 183 (291)
.-.+++.+..+|.| +|++++.. | |+ -.++...+.+.+..+||..
T Consensus 185 ---------p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 185 ---------PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRV 255 (288)
T ss_pred ---------hHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchh
Confidence 44788899999999 89888731 1 10 0236677888999999976
Q ss_pred cEEEeCCCCCC
Q 043626 184 GVVVDYPHSSK 194 (291)
Q Consensus 184 ~~~~~~p~~~~ 194 (291)
......|...+
T Consensus 256 eawTrlPYLCE 266 (288)
T KOG3987|consen 256 EAWTRLPYLCE 266 (288)
T ss_pred hhhhcCCeecc
Confidence 44444555544
No 218
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.22 E-value=2.1e-05 Score=71.30 Aligned_cols=118 Identities=19% Similarity=0.094 Sum_probs=78.0
Q ss_pred CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCCcceEE-----EccC-CCCCCCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALEREVEGDLL-----LGDM-GQGLGLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~~~~~~-----~~D~-~~~~~~~~~~fD~Vis~~~ 122 (291)
+.+|||+|||+|..+-.+.+. -.+++++|.|+.|++.++.......-. ...+ .+..++ ...|+||+.++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~DLvi~s~~ 111 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF--PPDDLVIASYV 111 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--CCCcEEEEehh
Confidence 679999999999877666553 378999999999999887754332111 0111 111222 23499999999
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCC
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFA 182 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~ 182 (291)
|.-|.+ .....+++.+.+.+.+ .+|+.-.+ .....+..+.+.+...|+.
T Consensus 112 L~EL~~---------~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~ 162 (274)
T PF09243_consen 112 LNELPS---------AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH 162 (274)
T ss_pred hhcCCc---------hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence 998854 2256788888888876 55543322 2334566667777777765
No 219
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.21 E-value=2.4e-05 Score=74.82 Aligned_cols=109 Identities=21% Similarity=0.274 Sum_probs=89.6
Q ss_pred CeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 53 RLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
.++|-+|||.--+...+-+.| +.++.+|+|+..++....+. ....+...|+ ..+.|++++||+||....++++.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~-~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM-DQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecc-hhccCCCcceeEEEecCcccccc
Confidence 389999999999999998888 89999999999988887765 2367888898 56889999999999999999886
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
.+.....++ ......+..+.++|++||+.+..+++
T Consensus 129 ~de~a~~~~-~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNT-AHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhh-HHhhHHHhhHHHHhccCCEEEEEEee
Confidence 544333333 34678899999999999998876653
No 220
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.1e-05 Score=68.86 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=98.8
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCC-CC
Q 043626 38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQ-GL 107 (291)
Q Consensus 38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~-~~ 107 (291)
..++.+|.+.+ ++.||+-|+|+|.++..|+..- .+++-+|+-..-.+.|.+.+.+ +.+.+-|+.. ++
T Consensus 95 a~I~~~L~i~P---GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 95 AMILSMLEIRP---GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHhcCCC---CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 45677888887 8899999999999999999873 7899999988888888775543 6788888854 23
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEE
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVV 187 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~ 187 (291)
......+|.|+....-.|. .+-.++..|+.+|.-++.|.|. -+|++.-++++..+||.....+
T Consensus 172 ~~ks~~aDaVFLDlPaPw~----------------AiPha~~~lk~~g~r~csFSPC-IEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLPAPWE----------------AIPHAAKILKDEGGRLCSFSPC-IEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred cccccccceEEEcCCChhh----------------hhhhhHHHhhhcCceEEeccHH-HHHHHHHHHHHHhCCCceEEEE
Confidence 4446789999976554443 4455677899888767777553 3788888999999999873333
No 221
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.18 E-value=3.3e-06 Score=79.09 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=82.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+..++|+|||.|.....++... ..++|+|.++-.+..+..... ...++.+|+ ...||++++||++.++-+.+
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~-~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF-GKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh-hcCCCCccccCcEEEEeecc
Confidence 4589999999999999999875 899999999987777665432 245677887 44689999999999999999
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
|.++ ...++.+++++++|||.++.
T Consensus 190 ~~~~-----------~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 190 HAPD-----------LEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred cCCc-----------HHHHHHHHhcccCCCceEEe
Confidence 9988 78999999999999999998
No 222
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.14 E-value=0.00015 Score=67.03 Aligned_cols=113 Identities=19% Similarity=0.088 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+..+|||||++|.++..|.++|..|++||..+ | +........+..+..|.....|. .+.+|+++|-.+-.
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l-~~~L~~~~~V~h~~~d~fr~~p~-~~~vDwvVcDmve~------- 281 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-M-AQSLMDTGQVEHLRADGFKFRPP-RKNVDWLVCDMVEK------- 281 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-c-CHhhhCCCCEEEEeccCcccCCC-CCCCCEEEEecccC-------
Confidence 78999999999999999999999999999654 2 22233345567777775444432 67899999875532
Q ss_pred cCCchHHHHHHHHHHHHHhccCC--cEEEEE--EcCC-ChH----HHHHHHHHHHHcCCC
Q 043626 132 ASHEPRLRLKAFFGSLYRCLARG--ARAVFQ--IYPE-SVA----QRELILGAAMRAGFA 182 (291)
Q Consensus 132 ~~~~p~~~l~~~l~~l~~~Lkpg--G~lv~~--~~~~-~~~----~~~~i~~~~~~aGF~ 182 (291)
| .++..-+...|..| ..+||. +... ..+ .++.|.+.+.++|..
T Consensus 282 ----P----~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~ 333 (357)
T PRK11760 282 ----P----ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGIN 333 (357)
T ss_pred ----H----HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3 34444555555554 345554 3222 222 234466677778774
No 223
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.14 E-value=1.8e-05 Score=67.14 Aligned_cols=118 Identities=18% Similarity=0.074 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCC-CCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCC
Q 043626 35 KLSERALELLALP-DDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQG 106 (291)
Q Consensus 35 ~~~~~~lelL~~~-~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~ 106 (291)
.+.+.+.+.|... -. +.++||+-+|||.++...+.+| ..++.||.+...+...++|.. +..++..|....
T Consensus 28 rVREalFNil~~~~i~--g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~ 105 (187)
T COG0742 28 RVREALFNILAPDEIE--GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA 105 (187)
T ss_pred HHHHHHHHhccccccC--CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence 5667777887652 32 7899999999999999999998 799999999999999988753 356777887543
Q ss_pred CCCCCC--cccEEEECCchhhhccccccCCchHHHHHHHHHH--HHHhccCCcEEEEEEcCC
Q 043626 107 LGLRPG--VVDGAISISAVQWLCNADKASHEPRLRLKAFFGS--LYRCLARGARAVFQIYPE 164 (291)
Q Consensus 107 ~~~~~~--~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~--l~~~LkpgG~lv~~~~~~ 164 (291)
++-... +||+|+.-..+++= - .+ ....+.. -...|+|+|.+++.....
T Consensus 106 L~~~~~~~~FDlVflDPPy~~~-l-----~~----~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 106 LKQLGTREPFDLVFLDPPYAKG-L-----LD----KELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHhcCCCCcccEEEeCCCCccc-h-----hh----HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 332233 59999987665521 0 00 1122222 457799999999987443
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.12 E-value=6.7e-06 Score=77.55 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=73.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
+.+|||+.||+|..+..++.. | ..|+++|+++.+++.+++|.. ++.+++.|+...+......||+|.... +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 358999999999999999886 4 689999999999999988653 356788887544332246799998653 2
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
. . ...|+..+.+.+++||.++++
T Consensus 124 G-s-------------~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-T-------------PAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-C-------------cHHHHHHHHHhcccCCEEEEE
Confidence 1 1 347899999999999999995
No 225
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.11 E-value=4.5e-05 Score=71.57 Aligned_cols=68 Identities=31% Similarity=0.439 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccC
Q 043626 32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDM 103 (291)
Q Consensus 32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~ 103 (291)
....|.+.+++++...+ . .|||+-||+|.++..|+..+..|+|||+++.+++.|+++.. ++.|+.++.
T Consensus 181 ~~~~l~~~~~~~l~~~~---~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSK---G-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHHHHHCTT-T---T-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHHHHHhhcCC---C-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 45688888999988664 3 79999999999999999999999999999999999987653 467887665
No 226
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.11 E-value=7.2e-05 Score=67.28 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGLR 110 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~~ 110 (291)
..+++.+++.+.+.+ +..|||||+|+|.++..|++.+..++++|+++.+++..+++. ..+.++.+|+.+ +...
T Consensus 16 ~~~~~~Iv~~~~~~~---~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~-~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSE---GDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK-WDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGT---TSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT-SCGG
T ss_pred HHHHHHHHHhcCCCC---CCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhc-cccH
Confidence 367888889888775 789999999999999999999999999999999999999865 457899999854 3322
Q ss_pred C---CcccEEEEC
Q 043626 111 P---GVVDGAISI 120 (291)
Q Consensus 111 ~---~~fD~Vis~ 120 (291)
. .....|+++
T Consensus 92 ~~~~~~~~~vv~N 104 (262)
T PF00398_consen 92 DLLKNQPLLVVGN 104 (262)
T ss_dssp GHCSSSEEEEEEE
T ss_pred HhhcCCceEEEEE
Confidence 2 345577776
No 227
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.10 E-value=4.3e-05 Score=71.49 Aligned_cols=123 Identities=22% Similarity=0.130 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCC------------------------------------
Q 043626 31 DIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGH------------------------------------ 74 (291)
Q Consensus 31 ~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~------------------------------------ 74 (291)
.+-..++..++.+-...+ +..++|-=||||.+....+-.+.
T Consensus 174 pLketLAaAil~lagw~~---~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 174 PLKETLAAAILLLAGWKP---DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred CchHHHHHHHHHHcCCCC---CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 345577778887777665 56899999999999877765542
Q ss_pred -----eEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCc--hHHHHH
Q 043626 75 -----QWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHE--PRLRLK 141 (291)
Q Consensus 75 -----~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~--p~~~l~ 141 (291)
.++|+||++.|++.|+.|... +.|.++|+ +.++.+.+.+|+||||.... .+...+ ...-..
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~-~~l~~~~~~~gvvI~NPPYG-----eRlg~~~~v~~LY~ 324 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA-TDLKEPLEEYGVVISNPPYG-----ERLGSEALVAKLYR 324 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch-hhCCCCCCcCCEEEeCCCcc-----hhcCChhhHHHHHH
Confidence 378999999999999988643 68999998 44443337999999995442 221111 222245
Q ss_pred HHHHHHHHhccCCcEEEEEEc
Q 043626 142 AFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 142 ~~l~~l~~~LkpgG~lv~~~~ 162 (291)
.|.+.+.+.++.-++++|+..
T Consensus 325 ~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 325 EFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHhcCCceEEEEcc
Confidence 666777788888889998873
No 228
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=8e-05 Score=64.81 Aligned_cols=141 Identities=15% Similarity=0.042 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhCCCCCCC--CCeEEEEcCCCchhHHHHH--HcCCeEEEEeCCHHHHHHHH---h--cCCcceEEEccC
Q 043626 33 QAKLSERALELLALPDDGV--PRLLLDIGCGSGLSGETLS--ENGHQWIGLDISQSMLNIAL---E--REVEGDLLLGDM 103 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~--~~~VLDiGcGsG~~~~~L~--~~g~~v~gvDis~~ml~~a~---~--~~~~~~~~~~D~ 103 (291)
..-+..++++.+..-+... +.+++|||+|.|.-|..|+ .....++-+|....-+...+ . ...++.++++.+
T Consensus 47 ~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra 126 (215)
T COG0357 47 EELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA 126 (215)
T ss_pred HHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH
Confidence 3444555565554322111 3699999999999888876 33456999999886544433 2 234588898888
Q ss_pred CCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 104 GQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 104 ~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
++.-.-... ||+|+|-.+-. +..++..+...|++||.+++..+....++......+....||.-
T Consensus 127 E~~~~~~~~-~D~vtsRAva~---------------L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 127 EEFGQEKKQ-YDVVTSRAVAS---------------LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQV 190 (215)
T ss_pred hhccccccc-CcEEEeehccc---------------hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcE
Confidence 442221111 99999864432 56788889999999999887665555567777777778887775
Q ss_pred cEEEeC
Q 043626 184 GVVVDY 189 (291)
Q Consensus 184 ~~~~~~ 189 (291)
..+..+
T Consensus 191 ~~~~~~ 196 (215)
T COG0357 191 EKVFSL 196 (215)
T ss_pred EEEEEe
Confidence 333333
No 229
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=7.2e-05 Score=63.12 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEc-cCCCCC-------CCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLG-DMGQGL-------GLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~-D~~~~~-------~~~~~~fD~Vis~ 120 (291)
+.+|||+||.+|.+++...++. ..|.|||+-.- .-...+.++.+ |+.+.. ..+....|+|+|.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec------cCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 6799999999999999988873 78999998331 11122445554 664421 1345678999987
Q ss_pred CchhhhccccccCCc-hHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626 121 SAVQWLCNADKASHE-PRLRLKAFFGSLYRCLARGARAVFQIYPES 165 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~-p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~ 165 (291)
++...--.. ...|. .-.-...++-.....+.|+|.+++.+|...
T Consensus 144 MapnaTGvr-~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 144 MAPNATGVR-IRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cCCCCcCcc-hhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 654211000 00000 001123445555677889999999998654
No 230
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.01 E-value=4.1e-05 Score=78.05 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---------------------------------------
Q 043626 32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--------------------------------------- 72 (291)
Q Consensus 32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--------------------------------------- 72 (291)
+...++..++.+.....+ +..++|.+||+|.+....+..
T Consensus 173 l~etlAaa~l~~a~w~~~--~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 173 LKENLAAAILLRSGWPQE--GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CcHHHHHHHHHHcCCCCC--CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 456778888877666332 679999999999988665431
Q ss_pred -----CCeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCCC--CCCcccEEEECCch
Q 043626 73 -----GHQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLGL--RPGVVDGAISISAV 123 (291)
Q Consensus 73 -----g~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~~--~~~~fD~Vis~~~l 123 (291)
...++|+|+++.+++.|+.|... +.+..+|+.+ ++. ..++||+||+|..+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~-~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVAD-LKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhh-cccccccCCCCEEEECCCC
Confidence 12589999999999999988532 5788889844 332 23579999999544
No 231
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.96 E-value=4.3e-05 Score=66.26 Aligned_cols=129 Identities=22% Similarity=0.214 Sum_probs=86.4
Q ss_pred EEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCCCCCCc-ccEEEECCchhh
Q 043626 55 LLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLGLRPGV-VDGAISISAVQW 125 (291)
Q Consensus 55 VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~~~~~~-fD~Vis~~~l~~ 125 (291)
|.||||-=|.+...|.+.| ..++++|+++.-++.|+++.. .+++.++|-.+ ++.++. .|.||...+=.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~--~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE--VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG--G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc--ccCCCCCCCEEEEecCCHH
Confidence 6899999999999999998 589999999999999988653 26778887433 344554 788886554333
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEeeC
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCG 205 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~g 205 (291)
+ ...++......++....|+++-. .....+..++...||.- ++.--.....++|.++.+-
T Consensus 79 l-------------I~~ILe~~~~~~~~~~~lILqP~----~~~~~LR~~L~~~gf~I---~~E~lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 79 L-------------IIEILEAGPEKLSSAKRLILQPN----THAYELRRWLYENGFEI---IDEDLVEENGRFYEIIVAE 138 (205)
T ss_dssp H-------------HHHHHHHTGGGGTT--EEEEEES----S-HHHHHHHHHHTTEEE---EEEEEEEETTEEEEEEEEE
T ss_pred H-------------HHHHHHhhHHHhccCCeEEEeCC----CChHHHHHHHHHCCCEE---EEeEEEeECCEEEEEEEEE
Confidence 3 56788887777777778888752 35667889999999964 2221122345777666654
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.95 E-value=7.1e-05 Score=73.84 Aligned_cols=73 Identities=18% Similarity=0.073 Sum_probs=50.2
Q ss_pred CCeEEEEcCCCchhHHHHHHcC----------CeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCC-C---CCCCC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG----------HQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQG-L---GLRPG 112 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g----------~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~-~---~~~~~ 112 (291)
..+|||.|||+|.+...+++.. ..++|+|+++.++..|+.+... +.+...|.... . .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4699999999999998887532 4689999999999998876422 23443432111 0 11135
Q ss_pred cccEEEECCchh
Q 043626 113 VVDGAISISAVQ 124 (291)
Q Consensus 113 ~fD~Vis~~~l~ 124 (291)
.||+||+|...-
T Consensus 112 ~fD~IIgNPPy~ 123 (524)
T TIGR02987 112 LFDIVITNPPYG 123 (524)
T ss_pred cccEEEeCCCcc
Confidence 899999995543
No 233
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.95 E-value=2.9e-05 Score=67.27 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcC--------------CcceE
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALERE--------------VEGDL 98 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~--------------~~~~~ 98 (291)
.....+++.+.+.+ ....+|||||.|......+-. + ...+||++.+...+.|.... ..+.+
T Consensus 29 ~~~~~il~~~~l~~---~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 29 EFVSKILDELNLTP---DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHHTT--T---T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHHHhCCCC---CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 44556778888776 779999999999987766643 5 56999999998877765422 12566
Q ss_pred EEccCCCCCCCC---CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 99 LLGDMGQGLGLR---PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 99 ~~~D~~~~~~~~---~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
..+|+.+. ++. -...|+|+++...- +|. +...+..+...||+|.++|-
T Consensus 106 ~~gdfl~~-~~~~~~~s~AdvVf~Nn~~F----------~~~--l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 106 IHGDFLDP-DFVKDIWSDADVVFVNNTCF----------DPD--LNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ECS-TTTH-HHHHHHGHC-SEEEE--TTT-----------HH--HHHHHHHHHTTS-TT-EEEE
T ss_pred eccCcccc-HhHhhhhcCCCEEEEecccc----------CHH--HHHHHHHHHhcCCCCCEEEE
Confidence 77776431 110 13468999876531 121 55666788888999988764
No 234
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.89 E-value=8.9e-06 Score=67.77 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=49.5
Q ss_pred eEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCCC-CCCCc-ccEEEECC
Q 043626 54 LLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGLG-LRPGV-VDGAISIS 121 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~~-~~~~~-fD~Vis~~ 121 (291)
.|||+.||.|..+..++..+.+|++||+++..++.|+.+.. .++++++|..+.++ +.... ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 69999999999999999999999999999999999998752 47999999865433 22222 89999874
No 235
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.88 E-value=0.00013 Score=63.43 Aligned_cols=95 Identities=21% Similarity=0.261 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCC-----CCCCCcccEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGL-----GLRPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~-----~~~~~~fD~V 117 (291)
+.++||||.=||.++..++.. +..|+++|+++...+++.+.. ..+++++++..+.+ ....++||.|
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 568999999999888887755 689999999999999886533 23788888765543 2357899999
Q ss_pred EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+.- + ++. .....+..+.++|++||.+++.
T Consensus 154 FvD----a----dK~------nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 154 FVD----A----DKD------NYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEc----c----chH------HHHHHHHHHHhhcccccEEEEe
Confidence 942 2 221 1557889999999999999984
No 236
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.84 E-value=0.0003 Score=62.98 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCc--hhHHHHHHc---CCeEEEEeCCHHHHHHHHhcCC---c--ceEEEc
Q 043626 32 IQAKLSERALELLALPDDGVPRLLLDIGCGSG--LSGETLSEN---GHQWIGLDISQSMLNIALEREV---E--GDLLLG 101 (291)
Q Consensus 32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG--~~~~~L~~~---g~~v~gvDis~~ml~~a~~~~~---~--~~~~~~ 101 (291)
..+....++++.|..... -...||||||-= ..+-.+++. ...|+-||+++-.+..++.... . ..++.+
T Consensus 51 ~nR~Fl~RaVr~la~~~G--IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~a 128 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEAG--IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHHHHCTT-----EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE-
T ss_pred HHHHHHHHHHHHHHHhcC--cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeC
Confidence 455677788888766532 458999999943 233444443 4899999999999887766432 3 578999
Q ss_pred cCCCCC-----C-----CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC--ChHHH
Q 043626 102 DMGQGL-----G-----LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE--SVAQR 169 (291)
Q Consensus 102 D~~~~~-----~-----~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~--~~~~~ 169 (291)
|+.+.- | +.-...=.++.+.+|||+.+.+. ...++..+...|.||..|+++.... .+...
T Consensus 129 D~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~d--------p~~iv~~l~d~lapGS~L~ish~t~d~~p~~~ 200 (267)
T PF04672_consen 129 DLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDD--------PAGIVARLRDALAPGSYLAISHATDDGAPERA 200 (267)
T ss_dssp -TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCT--------HHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHH
T ss_pred CCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccC--------HHHHHHHHHHhCCCCceEEEEecCCCCCHHHH
Confidence 985421 0 11122226777899999977332 5689999999999999999987653 34455
Q ss_pred HHHHHHHHHcC
Q 043626 170 ELILGAAMRAG 180 (291)
Q Consensus 170 ~~i~~~~~~aG 180 (291)
..+...+.+.|
T Consensus 201 ~~~~~~~~~~~ 211 (267)
T PF04672_consen 201 EALEAVYAQAG 211 (267)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHcCC
Confidence 66666666554
No 237
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.77 E-value=0.00063 Score=59.21 Aligned_cols=145 Identities=19% Similarity=0.163 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhC---CCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHH----HHHHHHhcCCcceEEE
Q 043626 31 DIQAKLSERALELLA---LPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQS----MLNIALEREVEGDLLL 100 (291)
Q Consensus 31 ~iq~~~~~~~lelL~---~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~----ml~~a~~~~~~~~~~~ 100 (291)
..++.++..++.-+. +.+ +.+||-+|+.+|....++++- ...|++|+.|+. .+.+|+++ .++-.+.
T Consensus 53 P~RSKLaAai~~Gl~~~~ik~---gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NIiPIl 128 (229)
T PF01269_consen 53 PFRSKLAAAILKGLENIPIKP---GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNIIPIL 128 (229)
T ss_dssp TTT-HHHHHHHTT-S--S--T---T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTEEEEE
T ss_pred chhhHHHHHHHcCccccCCCC---CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-Cceeeee
Confidence 345566666655443 444 789999999999999999986 369999999994 45555554 4566778
Q ss_pred ccCCCCCC--CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-------CChHHHHH
Q 043626 101 GDMGQGLG--LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-------ESVAQREL 171 (291)
Q Consensus 101 ~D~~~~~~--~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-------~~~~~~~~ 171 (291)
.|+..... ..-+.+|+|++.-+ | |. ...-+..++...||+||.+++.+-. ....-...
T Consensus 129 ~DAr~P~~Y~~lv~~VDvI~~DVa-Q-----------p~-Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~ 195 (229)
T PF01269_consen 129 EDARHPEKYRMLVEMVDVIFQDVA-Q-----------PD-QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAE 195 (229)
T ss_dssp S-TTSGGGGTTTS--EEEEEEE-S-S-----------TT-HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHH
T ss_pred ccCCChHHhhcccccccEEEecCC-C-----------hH-HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHH
Confidence 88754321 22458999997522 1 11 1557788888999999999987632 11123344
Q ss_pred HHHHHHHcCCCCcEEEeC-CCC
Q 043626 172 ILGAAMRAGFAGGVVVDY-PHS 192 (291)
Q Consensus 172 i~~~~~~aGF~~~~~~~~-p~~ 192 (291)
-.+.+...||..-..++. |+.
T Consensus 196 e~~~L~~~~~~~~e~i~LePy~ 217 (229)
T PF01269_consen 196 EVKKLKEEGFKPLEQITLEPYE 217 (229)
T ss_dssp HHHHHHCTTCEEEEEEE-TTTS
T ss_pred HHHHHHHcCCChheEeccCCCC
Confidence 455667778987444444 544
No 238
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.74 E-value=0.00019 Score=67.79 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=40.8
Q ss_pred CCCCCcccEEEECCchhhhccccccC-----------------Cch----------HHHHHHHHHHHHHhccCCcEEEEE
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKAS-----------------HEP----------RLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~-----------------~~p----------~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
-|+.++.++++|.+++|||..-.... ..| .+++..||+.=++-|.|||++++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 37789999999999999997421110 001 123567777778889999999998
Q ss_pred EcCC
Q 043626 161 IYPE 164 (291)
Q Consensus 161 ~~~~ 164 (291)
+.+.
T Consensus 237 ~~Gr 240 (386)
T PLN02668 237 CLGR 240 (386)
T ss_pred EecC
Confidence 7543
No 239
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.74 E-value=2.2e-05 Score=71.45 Aligned_cols=142 Identities=17% Similarity=0.094 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC-----cceEEEccC
Q 043626 32 IQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV-----EGDLLLGDM 103 (291)
Q Consensus 32 iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~ 103 (291)
+|..-+..+...|...+ +..|||+++++|.-+..+++.- ..++++|+++.-+.....+.. .+..+..|.
T Consensus 69 vQd~sS~l~~~~L~~~~---~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~ 145 (283)
T PF01189_consen 69 VQDESSQLVALALDPQP---GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA 145 (283)
T ss_dssp EHHHHHHHHHHHHTTTT---TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH
T ss_pred ecccccccccccccccc---cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc
Confidence 35555555666666555 7799999999999999998862 799999999998888876543 245555665
Q ss_pred CCCCCC-CCCcccEEEECCc---hhhh-ccccccCC-ch------HHHHHHHHHHHHHhc----cCCcEEEEEEcCCChH
Q 043626 104 GQGLGL-RPGVVDGAISISA---VQWL-CNADKASH-EP------RLRLKAFFGSLYRCL----ARGARAVFQIYPESVA 167 (291)
Q Consensus 104 ~~~~~~-~~~~fD~Vis~~~---l~~l-~~~~~~~~-~p------~~~l~~~l~~l~~~L----kpgG~lv~~~~~~~~~ 167 (291)
....+. ....||.|+.-.. ...+ .+++.+.. .+ ...-..+|.++.+.+ +|||+++.++..-.++
T Consensus 146 ~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 146 RKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp HHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred ccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 432221 2335999996421 1111 11111100 00 111267899999999 9999999987653333
Q ss_pred HHHHHHHHH
Q 043626 168 QRELILGAA 176 (291)
Q Consensus 168 ~~~~i~~~~ 176 (291)
+-+.+...+
T Consensus 226 ENE~vV~~f 234 (283)
T PF01189_consen 226 ENEEVVEKF 234 (283)
T ss_dssp GTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 240
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.71 E-value=0.00081 Score=58.28 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=76.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCC-CCC-CCCCcccEEEECCchhhhcc
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQ-GLG-LRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~-~~~-~~~~~fD~Vis~~~l~~l~~ 128 (291)
..++|||||=+...... ..+ ..|+.||+.+. .-.+...|+.+ .+| -..+.||+|+++.+|.++++
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 36999999854432222 223 56999999762 12345555533 122 23679999999999999987
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcE-----EEEEEcC-----CChHHHHHHHHHHHHcCCCC
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGAR-----AVFQIYP-----ESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~-----lv~~~~~-----~~~~~~~~i~~~~~~aGF~~ 183 (291)
|..+ -..+..+++.|+|+|. +++.+.. ......+.+..++...||.-
T Consensus 120 -------p~~R-G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 120 -------PKQR-GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred -------HHHH-HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEE
Confidence 4443 4789999999999999 7665421 12234567888899999964
No 241
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=3e-05 Score=63.44 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=60.2
Q ss_pred eEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc
Q 043626 54 LLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA 132 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~ 132 (291)
..+-||||. .+. .-|+-+|+-. .+++++++-. ....+|.+++.|+|++.+++.|+..
T Consensus 5 ~kv~ig~G~--------~r~npgWi~~d~ed---------~~~vdlvc~A-s~e~~F~dns~d~iyaeHvlEHlt~---- 62 (185)
T COG4627 5 EKVKIGAGG--------KRVNPGWIITDVED---------RPEVDLVCRA-SNESMFEDNSVDAIYAEHVLEHLTY---- 62 (185)
T ss_pred eEEEEeccc--------cccCCCceeeehhc---------ccccchhhhh-hhhccCCCcchHHHHHHHHHHHHhH----
Confidence 578899997 232 2577777622 2245555433 3567899999999999999999954
Q ss_pred CCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 133 SHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 133 ~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
.....+++.+++.|||||++-+.
T Consensus 63 -----~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 63 -----DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred -----HHHHHHHHHHHHHhCcCcEEEEE
Confidence 23678999999999999999984
No 242
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.71 E-value=0.00024 Score=68.36 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=87.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626 52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~ 128 (291)
-..|+|..+|.|.++.+|.+.. ..|+-+ ..++.|.+..++..-+ +..|..+.+++-+.+||+|.+...+..+.+
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG--~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~ 442 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIG--VYHDWCEAFSTYPRTYDLLHADGLFSLYKD 442 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccch--hccchhhccCCCCcchhheehhhhhhhhcc
Confidence 3579999999999999998875 233333 2333444433332211 234666777877999999999988876532
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY 189 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~ 189 (291)
+..+..++-++-++|+|||.+++.. +.+-+..+..++....++. .+.+-
T Consensus 443 --------rC~~~~illEmDRILRP~G~~iiRD---~~~vl~~v~~i~~~lrW~~-~~~d~ 491 (506)
T PF03141_consen 443 --------RCEMEDILLEMDRILRPGGWVIIRD---TVDVLEKVKKIAKSLRWEV-RIHDT 491 (506)
T ss_pred --------cccHHHHHHHhHhhcCCCceEEEec---cHHHHHHHHHHHHhCcceE-EEEec
Confidence 1337889999999999999999987 5667788888888888876 33333
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.67 E-value=0.00026 Score=65.51 Aligned_cols=144 Identities=23% Similarity=0.157 Sum_probs=98.2
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC------------CcceEEEccCCCCCCCCCCcccEE
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE------------VEGDLLLGDMGQGLGLRPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~------------~~~~~~~~D~~~~~~~~~~~fD~V 117 (291)
..+||-+|-|-|.....|.+.- .+++-||++|.|++.++.+. +.+.++..|..+.+.-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4589999999999999998873 79999999999999998542 125778888877665556799999
Q ss_pred EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC--CChHHHHHHHHHHHHcCCCC-cEEEeCCCCCC
Q 043626 118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP--ESVAQRELILGAAMRAGFAG-GVVVDYPHSSK 194 (291)
Q Consensus 118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~--~~~~~~~~i~~~~~~aGF~~-~~~~~~p~~~~ 194 (291)
|.. ++|++..+- .+.--..|...+.+.|+++|.+++|-.. ..++..-.+...++++||.. ..++.-|.-
T Consensus 370 IVD-----l~DP~tps~-~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTF-- 441 (508)
T COG4262 370 IVD-----LPDPSTPSI-GRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTF-- 441 (508)
T ss_pred EEe-----CCCCCCcch-hhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcc--
Confidence 964 334332110 0000146778889999999999998432 12334446778899999874 334444433
Q ss_pred CCcEEEEEeeC
Q 043626 195 SRKEFLVLTCG 205 (291)
Q Consensus 195 ~~~~~l~l~~g 205 (291)
..|-+...+
T Consensus 442 --GeWGf~l~~ 450 (508)
T COG4262 442 --GEWGFILAA 450 (508)
T ss_pred --cccceeecc
Confidence 345444443
No 244
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00052 Score=66.12 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLG 108 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~ 108 (291)
..+..-+-+.+.++. +..+||+.||||.++..+++....|+||+++++.+..|..+.. +++|+++-.+..++
T Consensus 369 evLys~i~e~~~l~~---~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPA---DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP 445 (534)
T ss_pred HHHHHHHHHHhCCCC---CcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence 345555667777776 6799999999999999999999999999999999999987653 46888884333222
Q ss_pred CC--C--CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626 109 LR--P--GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 109 ~~--~--~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~ 164 (291)
.. + ++-++|..+ |+.+++-+ ..+++.+.+.-++--.++++..++
T Consensus 446 sl~~~~~~~~~~v~ii-------DPpR~Glh-----~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 446 SLLTPCCDSETLVAII-------DPPRKGLH-----MKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred hhcccCCCCCceEEEE-------CCCccccc-----HHHHHHHHhccCccceEEEEcCHH
Confidence 10 1 233422211 22222211 245555665555666777777544
No 245
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.54 E-value=0.00054 Score=63.82 Aligned_cols=111 Identities=21% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc------------C------CeEEEEeCCHHHHHHHHh---c-------CCc--ceEEEc
Q 043626 52 PRLLLDIGCGSGLSGETLSEN------------G------HQWIGLDISQSMLNIALE---R-------EVE--GDLLLG 101 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~------------g------~~v~gvDis~~ml~~a~~---~-------~~~--~~~~~~ 101 (291)
+.+|+|+||.+|..+..+... + ..|+.-|.-.+=-...-. . ... +.-+.+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 679999999999988766531 1 367777864421111100 0 111 122334
Q ss_pred cCCCCCCCCCCcccEEEECCchhhhcccccc-------------C----CchH-----------HHHHHHHHHHHHhccC
Q 043626 102 DMGQGLGLRPGVVDGAISISAVQWLCNADKA-------------S----HEPR-----------LRLKAFFGSLYRCLAR 153 (291)
Q Consensus 102 D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~-------------~----~~p~-----------~~l~~~l~~l~~~Lkp 153 (291)
.+ .+--|+.++.|+++|.+++|||..-... . ..|. +++..||+.=++-|+|
T Consensus 97 SF-y~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 97 SF-YGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp -T-TS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred hh-hhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 44 2224779999999999999999752110 0 1222 3456777777888999
Q ss_pred CcEEEEEEcC
Q 043626 154 GARAVFQIYP 163 (291)
Q Consensus 154 gG~lv~~~~~ 163 (291)
||++++.+.+
T Consensus 176 GG~mvl~~~g 185 (334)
T PF03492_consen 176 GGRMVLTFLG 185 (334)
T ss_dssp EEEEEEEEEE
T ss_pred CcEEEEEEee
Confidence 9999998754
No 246
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.52 E-value=0.00048 Score=59.95 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=85.8
Q ss_pred CeEEEEcCCCchhHHHHHHc--------CC---eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCCCCcc
Q 043626 53 RLLLDIGCGSGLSGETLSEN--------GH---QWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLRPGVV 114 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~--------g~---~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~~~~f 114 (291)
.+++|+++.+|.++..|++. +. .+++||+.+- .-.+.+--+++|++..- -|..+..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M------aPI~GV~qlq~DIT~~stae~Ii~hfggekA 116 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM------APIEGVIQLQGDITSASTAEAIIEHFGGEKA 116 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC------CccCceEEeecccCCHhHHHHHHHHhCCCCc
Confidence 48999999999999999864 12 3999998552 12234566788886532 2556689
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK 194 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~ 194 (291)
|+|||..+..-.--.+...+--..-+...|.....+|+|||.||..++-.+ ...+|..++..- |.. +..--|.+.+
T Consensus 117 dlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~--~tslLysql~~f-f~k-v~~~KPrsSR 192 (294)
T KOG1099|consen 117 DLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR--DTSLLYSQLRKF-FKK-VTCAKPRSSR 192 (294)
T ss_pred cEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC--chHHHHHHHHHH-hhc-eeeecCCccc
Confidence 999998764311000000011112246677777889999999998776543 334555555443 655 6666777766
Q ss_pred CCcE
Q 043626 195 SRKE 198 (291)
Q Consensus 195 ~~~~ 198 (291)
+...
T Consensus 193 ~sSi 196 (294)
T KOG1099|consen 193 NSSI 196 (294)
T ss_pred cccc
Confidence 5543
No 247
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=7.3e-05 Score=61.65 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=86.7
Q ss_pred CCeEEEEcCC-CchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc--------ceEEEccCCCC-CCCCCCcccEEEE
Q 043626 52 PRLLLDIGCG-SGLSGETLSENG--HQWIGLDISQSMLNIALEREVE--------GDLLLGDMGQG-LGLRPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcG-sG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~--------~~~~~~D~~~~-~~~~~~~fD~Vis 119 (291)
+..||++|.| +|..+..++-.. ..|...|-++..++..+..... +..+..+.... ......+||.|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 5689999999 577777777553 7899999999888766553211 11222222111 1223458999999
Q ss_pred CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeC
Q 043626 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDY 189 (291)
Q Consensus 120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~ 189 (291)
..++-.=.. -..+++.+..+|+|.|++++ +.|.....++.+.......||.-.+..+|
T Consensus 110 ADClFfdE~-----------h~sLvdtIk~lL~p~g~Al~-fsPRRg~sL~kF~de~~~~gf~v~l~eny 167 (201)
T KOG3201|consen 110 ADCLFFDEH-----------HESLVDTIKSLLRPSGRALL-FSPRRGQSLQKFLDEVGTVGFTVCLEENY 167 (201)
T ss_pred ccchhHHHH-----------HHHHHHHHHHHhCcccceeE-ecCcccchHHHHHHHHHhceeEEEecccH
Confidence 887743211 45788899999999999554 66888889999999999999865444444
No 248
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.00097 Score=58.77 Aligned_cols=146 Identities=22% Similarity=0.314 Sum_probs=94.9
Q ss_pred CCCCCCCCcccCCchhhccccccchhHHHHH------HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----C
Q 043626 4 RPELIAPPEIFYDDTEARKYTSSSRIIDIQA------KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----G 73 (291)
Q Consensus 4 ~pe~~~ppe~fy~~~~a~~Y~~~~~~~~iq~------~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g 73 (291)
+|....||..||++.-+.-+++..+...+.. .+..++.|+..... ++.++|+|+|+-.-+..|... |
T Consensus 28 qtpktlpP~~FYD~~GS~LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~~ 104 (321)
T COG4301 28 QTPKTLPPKYFYDDRGSELFEQITRLPEYYPTRTEAAILQARAAEIASITG---ACTLVELGSGNSTKTRILLDALAHRG 104 (321)
T ss_pred cCCcCCCCceeecccHHHHHHHHhccccccCchhHHHHHHHHHHHHHHhhC---cceEEEecCCccHHHHHHHHHhhhcC
Confidence 4667889999999888877777555444321 22223444444444 789999999999888777653 4
Q ss_pred --CeEEEEeCCHHHHHHHHhcC----Cc--ceEEEccCCCCCCCCCC--cccEEEECCchhhhccccccCCchHHHHHHH
Q 043626 74 --HQWIGLDISQSMLNIALERE----VE--GDLLLGDMGQGLGLRPG--VVDGAISISAVQWLCNADKASHEPRLRLKAF 143 (291)
Q Consensus 74 --~~v~gvDis~~ml~~a~~~~----~~--~~~~~~D~~~~~~~~~~--~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~ 143 (291)
..++.+|+|.+.+....+.. +. +.-+++|....+...++ .==.++.-+++.-+ +|.. ...|
T Consensus 105 ~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~--------tp~e-~~~F 175 (321)
T COG4301 105 SLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNL--------TPGE-CAVF 175 (321)
T ss_pred CcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEEecccccCC--------ChHH-HHHH
Confidence 68999999999887654432 22 44466666443322222 21223334455433 3443 5689
Q ss_pred HHHHHHhccCCcEEEEEE
Q 043626 144 FGSLYRCLARGARAVFQI 161 (291)
Q Consensus 144 l~~l~~~LkpgG~lv~~~ 161 (291)
|..+...|.||-.+++.+
T Consensus 176 l~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 176 LTQLRGALRPGDYFLLGV 193 (321)
T ss_pred HHHHHhcCCCcceEEEec
Confidence 999999999999999854
No 249
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.47 E-value=0.0028 Score=57.41 Aligned_cols=128 Identities=15% Similarity=0.016 Sum_probs=87.6
Q ss_pred eEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCC-CCcccEEEECCchhhhccccc
Q 043626 54 LLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLR-PGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~-~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+|+|+.||.|.++.-+...| ..++++|+++.+++..+.+.... ++.+|+.+..+.. .+.+|+++....-+-+..+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 68999999999999998888 56788999999999999988754 6677875533322 467999999877665544332
Q ss_pred --cCCchHHHHHHHHHHHHHhccCCcEEEEEEcC-----CChHHHHHHHHHHHHcCCCC
Q 043626 132 --ASHEPRLRLKAFFGSLYRCLARGARAVFQIYP-----ESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 132 --~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-----~~~~~~~~i~~~~~~aGF~~ 183 (291)
...++...+-.-+-.+...++|. .+++.--+ ........+...+...||..
T Consensus 81 ~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~ 138 (275)
T cd00315 81 RKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNV 138 (275)
T ss_pred cCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEE
Confidence 22345443433333455556776 33333111 12456778899999999975
No 250
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0019 Score=55.81 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGL 107 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~ 107 (291)
-..+-+++.+.+.. + +.+||.||-|-|.....+.+.. ..=+-|+..+..+...+.... ++.++.+-..+-+
T Consensus 87 EtpiMha~A~ai~t-k---ggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl 162 (271)
T KOG1709|consen 87 ETPIMHALAEAIST-K---GGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL 162 (271)
T ss_pred hhHHHHHHHHHHhh-C---CceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhh
Confidence 34444555555553 3 7799999999999998888775 334457888998888887543 2444444332222
Q ss_pred -CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 108 -GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 108 -~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
.++++.||+|+-..--.+..+ +..|.+.+.++|||+|++-+
T Consensus 163 ~~L~d~~FDGI~yDTy~e~yEd-----------l~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELYED-----------LRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred ccccccCcceeEeechhhHHHH-----------HHHHHHHHhhhcCCCceEEE
Confidence 244788999996433244333 78899999999999997654
No 251
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.00046 Score=58.72 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=68.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhhh
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWL 126 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l 126 (291)
+.+|||+|+|+|..+...+..| ..|+..|+.+..+.....|. ..+.++..|+. . .+..||+++...++.--
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~---g-~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLI---G-SPPAFDLLLAGDLFYNH 155 (218)
T ss_pred cceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeecccc---C-CCcceeEEEeeceecCc
Confidence 5799999999999999999998 78999999987666554433 34677777762 2 57899999987665311
Q ss_pred ccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626 127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES 165 (291)
Q Consensus 127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~ 165 (291)
. . -.+++. +...|...|..++.+-|..
T Consensus 156 ~----------~-a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 156 T----------E-ADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred h----------H-HHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 1 0 234555 5555566666666555543
No 252
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.41 E-value=0.00031 Score=60.63 Aligned_cols=127 Identities=17% Similarity=0.090 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCc----------
Q 043626 30 IDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVE---------- 95 (291)
Q Consensus 30 ~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~---------- 95 (291)
..+..++.++++.++.-.. +.++.|-+||+|.+.-.+.-. -..++|-||++++|+.|++|..-
T Consensus 33 VRLAsEi~qR~l~~l~~~~---p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~ 109 (246)
T PF11599_consen 33 VRLASEIFQRALHYLEGKG---PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARR 109 (246)
T ss_dssp HHHHHHHHHHHHCTSSS-S----EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCC---CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHH
Confidence 3456688888888876544 789999999999977666532 26899999999999999886420
Q ss_pred -------------------------------------ceEEEccCCCCCC----CCCCcccEEEECCchhhhccccccCC
Q 043626 96 -------------------------------------GDLLLGDMGQGLG----LRPGVVDGAISISAVQWLCNADKASH 134 (291)
Q Consensus 96 -------------------------------------~~~~~~D~~~~~~----~~~~~fD~Vis~~~l~~l~~~~~~~~ 134 (291)
..+.+.|+.+.-+ -.....|+||..-....+.+-.- .
T Consensus 110 ~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g--~ 187 (246)
T PF11599_consen 110 EELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQG--E 187 (246)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccC--C
Confidence 2467777755211 11234699998633332222111 1
Q ss_pred chHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 135 EPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 135 ~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.+..-...+|..++.+|-.+++++++.
T Consensus 188 ~~~~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 188 GSGGPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp --HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCCcHHHHHHHHHhhCCCCcEEEEec
Confidence 233447899999999996666666643
No 253
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.37 E-value=0.00063 Score=55.30 Aligned_cols=43 Identities=23% Similarity=0.442 Sum_probs=38.0
Q ss_pred CCeEEEEcCCCchhHHHHHH-----c-CCeEEEEeCCHHHHHHHHhcCC
Q 043626 52 PRLLLDIGCGSGLSGETLSE-----N-GHQWIGLDISQSMLNIALEREV 94 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~-----~-g~~v~gvDis~~ml~~a~~~~~ 94 (291)
...|+|+|||.|.++..|+. . +..|+|||.++..++.+..+..
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 67999999999999999998 3 5899999999999888877643
No 254
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.36 E-value=0.00055 Score=57.94 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=71.9
Q ss_pred CeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 53 RLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
..+.|+|+|||.++...++....|++++.+|...+.|.++. .+++++.+|+ ....| ...|+|+|-+.=..|-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA-~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA-RDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc-ccccc--cccceeHHHHhhHHhh
Confidence 48999999999999999988899999999999999999984 3478899998 33555 5679999864333332
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
+ ++ ...++..+...|+..+.++=
T Consensus 111 ~------E~---qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 E------EK---QVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred c------cc---ccHHHHHHHHHhhcCCcccc
Confidence 2 12 23456666778888887775
No 255
>PRK10742 putative methyltransferase; Provisional
Probab=97.31 E-value=0.00059 Score=60.53 Aligned_cols=85 Identities=11% Similarity=-0.030 Sum_probs=64.1
Q ss_pred HHHHHHhCCCCCCCCC--eEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcC--------------CcceEEEc
Q 043626 38 ERALELLALPDDGVPR--LLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALERE--------------VEGDLLLG 101 (291)
Q Consensus 38 ~~~lelL~~~~~~~~~--~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~--------------~~~~~~~~ 101 (291)
+.+++.+.++. +. +|||+-+|+|..+..++..|..|+++|-++.+....++.. ..+.++.+
T Consensus 76 ~~l~kAvglk~---g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKG---DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCC---CCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 56677777766 44 8999999999999999999989999999997765554322 12566777
Q ss_pred cCCCCCCCCCCcccEEEECCchhh
Q 043626 102 DMGQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 102 D~~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
|....+.-...+||+|+.-..+.|
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCC
Confidence 765544433458999999877766
No 256
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.29 E-value=0.0058 Score=53.06 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=93.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc---ceEEEccCCCCC-CCCCC-cccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE---GDLLLGDMGQGL-GLRPG-VVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~---~~~~~~D~~~~~-~~~~~-~fD~Vis~~~l~ 124 (291)
+..+.||||--+.+...|.+.+ ..+++.|+++.-++.|..+... .+.+..+.++++ ++..+ .+|.|+...+=.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 3459999999999999999987 7899999999999999887643 234444444444 44444 789888654443
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEee
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTC 204 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~ 204 (291)
.+ ...++.+-..-|+.=-+++++- . .+...+.+++...+|.- +.-.-..+..++|-++.+
T Consensus 97 ~l-------------I~~ILee~~~~l~~~~rlILQP--n--~~~~~LR~~L~~~~~~I---~~E~ileE~~kiYEIlv~ 156 (226)
T COG2384 97 TL-------------IREILEEGKEKLKGVERLILQP--N--IHTYELREWLSANSYEI---KAETILEEDGKIYEILVV 156 (226)
T ss_pred HH-------------HHHHHHHhhhhhcCcceEEECC--C--CCHHHHHHHHHhCCcee---eeeeeecccCeEEEEEEE
Confidence 33 6678888888877555677652 2 35567888899999964 222223345677866665
Q ss_pred CC
Q 043626 205 GP 206 (291)
Q Consensus 205 g~ 206 (291)
-.
T Consensus 157 e~ 158 (226)
T COG2384 157 EK 158 (226)
T ss_pred ec
Confidence 43
No 257
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.0033 Score=57.24 Aligned_cols=121 Identities=20% Similarity=0.206 Sum_probs=81.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHH-------hcCC--------------------------c---
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIAL-------EREV--------------------------E--- 95 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~-------~~~~--------------------------~--- 95 (291)
...||--|||.|.++..|+..|..+-|=+.|--|+-... .... .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 458999999999999999999988888898887764321 1000 0
Q ss_pred -------ceE--EEccCCCCCC--CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE----
Q 043626 96 -------GDL--LLGDMGQGLG--LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ---- 160 (291)
Q Consensus 96 -------~~~--~~~D~~~~~~--~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~---- 160 (291)
..| ..+|+.+-.+ -..++||+|+..+.+.--.| +..++..++++|+|||..+=-
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~N-----------ileYi~tI~~iLk~GGvWiNlGPLl 299 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHN-----------ILEYIDTIYKILKPGGVWINLGPLL 299 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHH-----------HHHHHHHHHHhccCCcEEEecccee
Confidence 011 2234433222 12357999998766653333 778999999999999987741
Q ss_pred --EcCCC--------hHHHHHHHHHHHHcCCCC
Q 043626 161 --IYPES--------VAQRELILGAAMRAGFAG 183 (291)
Q Consensus 161 --~~~~~--------~~~~~~i~~~~~~aGF~~ 183 (291)
|-+.. ....+.+...+...||..
T Consensus 300 YHF~d~~g~~~~~siEls~edl~~v~~~~GF~~ 332 (369)
T KOG2798|consen 300 YHFEDTHGVENEMSIELSLEDLKRVASHRGFEV 332 (369)
T ss_pred eeccCCCCCcccccccccHHHHHHHHHhcCcEE
Confidence 11111 124678888999999974
No 258
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.05 E-value=0.0036 Score=57.14 Aligned_cols=91 Identities=21% Similarity=0.143 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCCCC--CCCeEEEEcCCCchhHHHHHH--cCCeEEEEeCCHHHHHHHHhcCC-------cceEEEcc-
Q 043626 35 KLSERALELLALPDDG--VPRLLLDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALEREV-------EGDLLLGD- 102 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~--~~~~VLDiGcGsG~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D- 102 (291)
.....+.++|....+. ..-++||||||...+=-.|.. .+..++|.||++..++.|+++.. .+.++...
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 4455666666554321 135899999998765444432 37999999999999999987542 25555442
Q ss_pred ---CCCCCCCCCCcccEEEECCchhh
Q 043626 103 ---MGQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 103 ---~~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
+...+-...+.||+++|+..++-
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-----S
T ss_pred ccccchhhhcccceeeEEecCCcccc
Confidence 22222233468999999977753
No 259
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.04 E-value=0.0066 Score=57.34 Aligned_cols=126 Identities=12% Similarity=0.102 Sum_probs=82.4
Q ss_pred CCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCCc-----ceEEEccCCCCCC---CCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALEREVE-----GDLLLGDMGQGLG---LRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~~-----~~~~~~D~~~~~~---~~~~~fD~Vis~ 120 (291)
+-+|||+++-+|.-+.+++.. + ..|++.|.+..-+.....+... ..+...|..+ +| | +++||-|+.-
T Consensus 242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~e-f~~~~~-~~~fDRVLLD 319 (460)
T KOG1122|consen 242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGRE-FPEKEF-PGSFDRVLLD 319 (460)
T ss_pred CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccc-cccccc-Ccccceeeec
Confidence 779999999999988888865 3 7999999999888877776532 3445556532 22 3 3489999853
Q ss_pred Cchhh--h--ccccccCCchHHH-------HHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHc
Q 043626 121 SAVQW--L--CNADKASHEPRLR-------LKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRA 179 (291)
Q Consensus 121 ~~l~~--l--~~~~~~~~~p~~~-------l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~a 179 (291)
..-.- + .+...+.....+. .+.+|.++..++++||+||-++..-..++-+.+..++.+.
T Consensus 320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K 389 (460)
T KOG1122|consen 320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKK 389 (460)
T ss_pred CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHh
Confidence 22111 0 0001111110111 2678889999999999999988776666656666665543
No 260
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.03 E-value=0.012 Score=52.29 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=72.0
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC----------cceEEEccCCCCC--CCCCCc-ccEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV----------EGDLLLGDMGQGL--GLRPGV-VDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~----------~~~~~~~D~~~~~--~~~~~~-fD~V 117 (291)
+..||++|+|+|..+...+.. +..|+..|+...+......+.. .+.+...+.+... .+.... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 568999999999999988885 5888888886654433222111 1222222322222 233344 9999
Q ss_pred EECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCC
Q 043626 118 ISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 118 is~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~ 183 (291)
++.-++..... ...++..++..|..++.+.+. |+-...+...+...+..--|..
T Consensus 167 lasDvvy~~~~-----------~e~Lv~tla~ll~~~~~i~l~-~~lr~~~~~~~~~~~~~~~~~~ 220 (248)
T KOG2793|consen 167 LASDVVYEEES-----------FEGLVKTLAFLLAKDGTIFLA-YPLRRDAAWEIEVLLFKKDLKI 220 (248)
T ss_pred EEeeeeecCCc-----------chhHHHHHHHHHhcCCeEEEE-EecccchHHHHHHHHhhhhhcc
Confidence 99988865433 557788888999999944444 4433333333444444433443
No 261
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.00 E-value=0.0022 Score=55.29 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE 91 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~ 91 (291)
...+.++++.....+ +..|||.-||||..+.+..+.|..++|+|+++...++|.+
T Consensus 177 P~~l~~~lI~~~t~~----gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKASTNP----GDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHHS-T----T-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhhhcc----ceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 347888888887544 5699999999999999999999999999999999998864
No 262
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.93 E-value=0.0029 Score=54.23 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=64.2
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC------------cceEEEccCCCCCC--CCCCccc
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV------------EGDLLLGDMGQGLG--LRPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~------------~~~~~~~D~~~~~~--~~~~~fD 115 (291)
.-.+.|||||-|.+...|+... .-++|++|--..-+..+++.. ++.++..+....+| |..+..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 3479999999999999999986 789999998877777766532 23444444322232 2222222
Q ss_pred EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
-.+..+.-.|+.. ..|.-.-.....+....-+|+.||.++..+
T Consensus 141 kmff~fpdpHfk~---~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKA---RKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhh---hhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 2222211122211 001111112467788889999999998776
No 263
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.075 Score=45.76 Aligned_cols=150 Identities=20% Similarity=0.189 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhC---CCCCCCCCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHH----HHHHhcCCcceEEEccC
Q 043626 33 QAKLSERALELLA---LPDDGVPRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSML----NIALEREVEGDLLLGDM 103 (291)
Q Consensus 33 q~~~~~~~lelL~---~~~~~~~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml----~~a~~~~~~~~~~~~D~ 103 (291)
.+.++..++.=|. +.+ +.+||-+|+.+|....++++- + ..++||+.|+.+. ..|.++ .++-.++.|+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~---g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni~PIL~DA 133 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKE---GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNIIPILEDA 133 (231)
T ss_pred hhHHHHHHHcCcccCCcCC---CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCceeeeccc
Confidence 4466666665554 333 789999999999999999987 3 7899999999654 444443 4566778887
Q ss_pred CCCC--CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC------CCh-HHHHHHHH
Q 043626 104 GQGL--GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP------ESV-AQRELILG 174 (291)
Q Consensus 104 ~~~~--~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~------~~~-~~~~~i~~ 174 (291)
.... .+--+..|+|+..- -| |. +..-+..++...|++||.+++.+-. ..+ .-...-..
T Consensus 134 ~~P~~Y~~~Ve~VDviy~DV-AQ-----------p~-Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 134 RKPEKYRHLVEKVDVIYQDV-AQ-----------PN-QAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred CCcHHhhhhcccccEEEEec-CC-----------ch-HHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 4322 12235689888541 11 21 2456778889999999977775321 122 23344566
Q ss_pred HHHHcCCCCcEEEeC-CCCCCCCcEEEEE
Q 043626 175 AAMRAGFAGGVVVDY-PHSSKSRKEFLVL 202 (291)
Q Consensus 175 ~~~~aGF~~~~~~~~-p~~~~~~~~~l~l 202 (291)
.++..||+.-.+++. |.. +.+++++
T Consensus 201 kL~~~~f~i~e~~~LePye---~DH~~i~ 226 (231)
T COG1889 201 KLEEGGFEILEVVDLEPYE---KDHALIV 226 (231)
T ss_pred HHHhcCceeeEEeccCCcc---cceEEEE
Confidence 788889987555554 433 3445444
No 264
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.012 Score=54.73 Aligned_cols=130 Identities=22% Similarity=0.167 Sum_probs=97.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC--CCCCcccEEEECCchhhhcc
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG--LRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~--~~~~~fD~Vis~~~l~~l~~ 128 (291)
...++|+-||.|.+..-+...| ..+.++|+++..++.-..+.....++..|+.+... +....+|+++..+.-|.+..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~ 82 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSI 82 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhh
Confidence 4689999999999999999988 56789999999999999998877888888854332 11228999999888877665
Q ss_pred cccc--CCchHHHHHHHHHHHHHhccCCcEEEEEEcC----CChHHHHHHHHHHHHcCCC
Q 043626 129 ADKA--SHEPRLRLKAFFGSLYRCLARGARAVFQIYP----ESVAQRELILGAAMRAGFA 182 (291)
Q Consensus 129 ~~~~--~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~----~~~~~~~~i~~~~~~aGF~ 182 (291)
+.+. ..+|+..|---+..+...++| -.+++.--+ ......+.|...|.+.||.
T Consensus 83 aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 83 AGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred cCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 4333 456666665556677778888 556664222 1334788899999999996
No 265
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.90 E-value=0.00018 Score=55.25 Aligned_cols=94 Identities=21% Similarity=0.123 Sum_probs=40.6
Q ss_pred EEEcCCCchhHHHHHHc---C--CeEEEEeCCH---HHHHHHHhc-C-CcceEEEccCCCCCC-CCCCcccEEEECCchh
Q 043626 56 LDIGCGSGLSGETLSEN---G--HQWIGLDISQ---SMLNIALER-E-VEGDLLLGDMGQGLG-LRPGVVDGAISISAVQ 124 (291)
Q Consensus 56 LDiGcGsG~~~~~L~~~---g--~~v~gvDis~---~ml~~a~~~-~-~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~ 124 (291)
||||+..|.++..+++. + .+++++|..+ ...+..++. . ..+.++.++..+.++ +..++||+|+.-..-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H- 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH- 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-
Confidence 68999999999888864 2 3899999999 444444331 1 237888888744332 224789999965321
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
........+..+...|+|||.+++..
T Consensus 80 -----------~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 -----------SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ------------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -----------CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11225677889999999999998853
No 266
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.89 E-value=0.0015 Score=52.52 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=41.1
Q ss_pred eEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCC-----cceEEEccCC
Q 043626 54 LLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREV-----EGDLLLGDMG 104 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~ 104 (291)
.|||||||.|.++..++..+ .+++++|+++.+++.++++.. ++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 48999999999999999886 379999999999998887632 3556655553
No 267
>PRK11524 putative methyltransferase; Provisional
Probab=96.89 E-value=0.0028 Score=57.62 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE 95 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~ 95 (291)
..+.++++.+...+ +..|||--||||..+.+..+.|-.++|+|+++..++.|.+++..
T Consensus 195 ~~L~erlI~~~S~~----GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNP----GDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCC----CCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 46778888876644 67999999999999999999999999999999999999998643
No 268
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.89 E-value=0.0036 Score=57.41 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCC--
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQG-- 106 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~-- 106 (291)
-|.+.+++.|...+ +..++|.-||.|..+..|++. ...++|+|.++.+++.++++.. .+.+++++..+.
T Consensus 7 Vll~Evl~~L~~~~---ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 7 VLLDEVVEGLNIKP---DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE 83 (305)
T ss_pred hhHHHHHHhcCcCC---CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH
Confidence 57788899998765 679999999999999999876 3899999999999999987653 355666655331
Q ss_pred -CC-CCCCcccEEEEC
Q 043626 107 -LG-LRPGVVDGAISI 120 (291)
Q Consensus 107 -~~-~~~~~fD~Vis~ 120 (291)
+. ....++|+|+..
T Consensus 84 ~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 84 HLDELLVTKIDGILVD 99 (305)
T ss_pred HHHhcCCCcccEEEEe
Confidence 11 122457777754
No 269
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.87 E-value=0.007 Score=51.65 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=81.9
Q ss_pred HHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCHH----------HHHHHHhc-CCcceEEEccCCCC
Q 043626 41 LELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQS----------MLNIALER-EVEGDLLLGDMGQG 106 (291)
Q Consensus 41 lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~~----------ml~~a~~~-~~~~~~~~~D~~~~ 106 (291)
|....+++ +++|+|+-.|.|.++..++.. | ..|+++=..+. +-..+++. ..+...+..++. .
T Consensus 41 L~FaGlkp---g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~-A 116 (238)
T COG4798 41 LAFAGLKP---GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLV-A 116 (238)
T ss_pred eEEeccCC---CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccc-c
Confidence 33445555 789999999999999999975 2 46666644332 22222221 122344444432 2
Q ss_pred CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC---CCh---------HHHHHHHH
Q 043626 107 LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP---ESV---------AQRELILG 174 (291)
Q Consensus 107 ~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~---~~~---------~~~~~i~~ 174 (291)
++ .++..|++..++..|-+.+.+ .| ......+...+++.|||||.+++..+- ... -....+..
T Consensus 117 ~~-~pq~~d~~~~~~~yhdmh~k~--i~--~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a 191 (238)
T COG4798 117 LG-APQKLDLVPTAQNYHDMHNKN--IH--PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIA 191 (238)
T ss_pred cC-CCCcccccccchhhhhhhccc--cC--cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHH
Confidence 23 567788888766655443211 11 233678899999999999999985431 111 12345667
Q ss_pred HHHHcCCCC
Q 043626 175 AAMRAGFAG 183 (291)
Q Consensus 175 ~~~~aGF~~ 183 (291)
..+.+||.-
T Consensus 192 ~veaaGFkl 200 (238)
T COG4798 192 EVEAAGFKL 200 (238)
T ss_pred HHHhhccee
Confidence 778899974
No 270
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.86 E-value=0.0016 Score=50.18 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCC
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDIS 82 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis 82 (291)
....+|||||+|.+...|...|+.=+|+|.-
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 5678999999999999999999999999973
No 271
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.80 E-value=0.016 Score=52.37 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCchhH-HHHHHc---CCeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCCCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSG-ETLSEN---GHQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLGLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~-~~L~~~---g~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~~~~~~fD~Vis~ 120 (291)
+.+|+=||||+=-++ ..|+.. +..++++|+++.+++.+++-.. .+.|+.+|.. ..+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~-~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVL-DVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GG-GG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchh-ccccccccCCEEEEh
Confidence 569999999986544 455543 3679999999999999976332 3688888873 344444689999865
Q ss_pred CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
....-- .+| -..+|..+.+.++||+.+++..
T Consensus 200 alVg~~-------~e~---K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMD-------AEP---KEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S-----------S---HHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccc-------cch---HHHHHHHHHhhCCCCcEEEEec
Confidence 444211 112 4689999999999999999973
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.72 E-value=0.011 Score=54.88 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=67.5
Q ss_pred HHHhCCCCCCCCCeEEEEcCC-CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEE
Q 043626 41 LELLALPDDGVPRLLLDIGCG-SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAI 118 (291)
Q Consensus 41 lelL~~~~~~~~~~VLDiGcG-sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vi 118 (291)
+......+ +..|+=+|+| .|..+..+++ .|.+|+++|+|++-++.|++...+.-+.-.|- +...--.+.||+||
T Consensus 159 lk~~~~~p---G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~-~~~~~~~~~~d~ii 234 (339)
T COG1064 159 LKKANVKP---GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDS-DALEAVKEIADAII 234 (339)
T ss_pred hhhcCCCC---CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCc-hhhHHhHhhCcEEE
Confidence 33344554 6788888887 3456677776 68999999999999999988765422221111 11211123499999
Q ss_pred ECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 119 SISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 119 s~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
.... . ..+....+.|++||++++.=.+
T Consensus 235 ~tv~-~-----------------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 235 DTVG-P-----------------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ECCC-h-----------------hhHHHHHHHHhcCCEEEEECCC
Confidence 7644 3 3466778899999999986544
No 273
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.71 E-value=0.0031 Score=55.58 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=53.1
Q ss_pred HHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh---cC-----------CcceEEEccC
Q 043626 38 ERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE---RE-----------VEGDLLLGDM 103 (291)
Q Consensus 38 ~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~---~~-----------~~~~~~~~D~ 103 (291)
+.+++...+.+. ...+|||.-||-|.-+..++..|..|++++-|+-+..+... +. ..++++.+|.
T Consensus 63 ~~l~kA~Glk~~-~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 63 DPLAKAVGLKPG-MRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp SHHHHHTT-BTT-B---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred cHHHHHhCCCCC-CCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 456666666652 12499999999999999999899999999999976544432 11 1268999998
Q ss_pred CCCCCCCCCcccEEEECCchhh
Q 043626 104 GQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 104 ~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
.+.+..+..+||+|+.-..+.+
T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCHCCCHSS--SEEEE--S---
T ss_pred HHHHhhcCCCCCEEEECCCCCC
Confidence 7777766789999999877765
No 274
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.70 E-value=0.021 Score=52.74 Aligned_cols=127 Identities=12% Similarity=0.006 Sum_probs=83.4
Q ss_pred EEEEcCCCchhHHHHHHcCCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc-
Q 043626 55 LLDIGCGSGLSGETLSENGHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA- 132 (291)
Q Consensus 55 VLDiGcGsG~~~~~L~~~g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~- 132 (291)
|+|+-||.|.+..-|...|.+ +.++|+++..++..+.+++. .++.+|+.+..+..-..+|+++....-|-+..+.+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~~ 79 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKRK 79 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcccC
Confidence 689999999999999988855 56799999999999988876 566778754222122368999987666655433221
Q ss_pred -CCchHHHHHHHHHHHHHhccCCcEEEEEEcC-----CChHHHHHHHHHHHHcCCCC
Q 043626 133 -SHEPRLRLKAFFGSLYRCLARGARAVFQIYP-----ESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 133 -~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~-----~~~~~~~~i~~~~~~aGF~~ 183 (291)
..+++..+-.-+-.+...++|. .+++.--+ ........+...+...||..
T Consensus 80 ~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v 135 (315)
T TIGR00675 80 GFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKV 135 (315)
T ss_pred CCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEE
Confidence 2344443333333444556775 34443111 12345678888899999975
No 275
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.66 E-value=0.0014 Score=50.72 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=34.4
Q ss_pred cccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 113 VVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 113 ~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.||+|+|.++.-|+-- ......+..+|..+++.|+|||.+++.-
T Consensus 1 ~yDvilclSVtkWIHL-----n~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHL-----NWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHH-----HHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEe-----cCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4899999999887631 2344558999999999999999999964
No 276
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.59 E-value=0.025 Score=55.47 Aligned_cols=124 Identities=20% Similarity=0.164 Sum_probs=79.3
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----C--CeEEEEeCCHHHHHHHHhcCC--cc----eEEEcc
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----G--HQWIGLDISQSMLNIALEREV--EG----DLLLGD 102 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----g--~~v~gvDis~~ml~~a~~~~~--~~----~~~~~D 102 (291)
.+++-++++|...+ ..+|.|-.||||.+.....+. . ..++|.|+++.+...|+.+.- .+ ....+|
T Consensus 173 ~v~~liv~~l~~~~---~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 173 EVSELIVELLDPEP---RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred HHHHHHHHHcCCCC---CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 56777788877633 569999999999866555432 1 569999999999999987642 22 223333
Q ss_pred CCCCCC----CCCCcccEEEECCchh---hhcccc-----------ccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 103 MGQGLG----LRPGVVDGAISISAVQ---WLCNAD-----------KASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 103 ~~~~~~----~~~~~fD~Vis~~~l~---~l~~~~-----------~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
-..... ...+.||.|+++..+. |..... .....+......|+..+...|+|||++.+.+
T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 211111 2346799999986553 433210 0011122223789999999999998777654
No 277
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.58 E-value=0.0042 Score=53.90 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC------cceEEEccCCCCC---CCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV------EGDLLLGDMGQGL---GLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~~~---~~~~~~fD~Vis~ 120 (291)
...|+|.-||.|..+...+..+..|++|||++.-|..|+.+.. .+.|+++|+.... .|...-+|+|...
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4489999999999999999999999999999999999998864 3789999974421 2323335565544
No 278
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.51 E-value=0.014 Score=51.85 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCCCCcccEEEECCchhh
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
+.+|+|||||---++..+... +..++|+||+..+++....-. ...++...|+....| ..+.|+++..=+++-
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~--~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPP--KEPADLALLLKTLPC 183 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHT--TSEESEEEEET-HHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCC--CCCcchhhHHHHHHH
Confidence 679999999998888877765 379999999999998876542 456778888855433 678999998877776
Q ss_pred hc
Q 043626 126 LC 127 (291)
Q Consensus 126 l~ 127 (291)
+.
T Consensus 184 le 185 (251)
T PF07091_consen 184 LE 185 (251)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 279
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.47 E-value=0.25 Score=43.67 Aligned_cols=120 Identities=14% Similarity=0.071 Sum_probs=67.9
Q ss_pred CCeEEEEcCCCchhHH-HHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCCC-CCcccEEEECCchhh
Q 043626 52 PRLLLDIGCGSGLSGE-TLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGLR-PGVVDGAISISAVQW 125 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~-~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~~-~~~fD~Vis~~~l~~ 125 (291)
+..||=||=.--.+.. .|......|+.+||++.+++...+.. ..+..+..|+...+|.. .+.||++++....
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy-- 122 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY-- 122 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S--
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC--
Confidence 6799999965544332 22233589999999999998765433 34788999998777643 5899999986321
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCc-EEEEEEcCCC--hHHHHHHHHHHHHcCCCC
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGA-RAVFQIYPES--VAQRELILGAAMRAGFAG 183 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG-~lv~~~~~~~--~~~~~~i~~~~~~aGF~~ 183 (291)
....+.-|+.....+|+.-| ..+|.+.... ......+.+.+.+.||.-
T Consensus 123 ----------T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 123 ----------TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp ----------SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EE
T ss_pred ----------CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCH
Confidence 11337889999999999766 6666665433 334456788888888863
No 280
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.042 Score=51.25 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=79.1
Q ss_pred CCCCCCCCCeEEEEcCCCchhHHHHHHcCC------eEEEEeCCHHHHHHHHhcC---Cc--ceEEEccCCCC--C----
Q 043626 45 ALPDDGVPRLLLDIGCGSGLSGETLSENGH------QWIGLDISQSMLNIALERE---VE--GDLLLGDMGQG--L---- 107 (291)
Q Consensus 45 ~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~------~v~gvDis~~ml~~a~~~~---~~--~~~~~~D~~~~--~---- 107 (291)
.+.+ +.+|||+++-+|.-+..|.+..+ .+++=|+++.-+....... +. ..+...|+... .
T Consensus 152 ~v~p---~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 152 GVKP---GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred ccCC---CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence 4455 78999999999999988888754 8999999997666555433 22 22233333111 1
Q ss_pred --CCCCCcccEEEECCchhhhccccccC----------------CchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHH
Q 043626 108 --GLRPGVVDGAISISAVQWLCNADKAS----------------HEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQR 169 (291)
Q Consensus 108 --~~~~~~fD~Vis~~~l~~l~~~~~~~----------------~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~ 169 (291)
+.....||-|++--. |..|... .+=+.-...++.+-.++||+||.+|-++..-++-+-
T Consensus 229 ~~~~~~~~fDrVLvDVP----CS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieN 304 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVP----CSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIEN 304 (375)
T ss_pred CchhhhhhcceeEEecc----cCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhh
Confidence 123356899886411 2221100 011111256788899999999999999887666554
Q ss_pred HHHHH-HHHHcC
Q 043626 170 ELILG-AAMRAG 180 (291)
Q Consensus 170 ~~i~~-~~~~aG 180 (291)
+.+.+ ++...|
T Consensus 305 EaVV~~~L~~~~ 316 (375)
T KOG2198|consen 305 EAVVQEALQKVG 316 (375)
T ss_pred HHHHHHHHHHhc
Confidence 44444 444443
No 281
>PRK13699 putative methylase; Provisional
Probab=96.33 E-value=0.014 Score=51.47 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE 95 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~ 95 (291)
.+.+++++....+ +..|||--||||..+.+..+.|..++|+|+++...+.+.++...
T Consensus 151 ~l~~~~i~~~s~~----g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 151 TSLQPLIESFTHP----NAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHhCCC----CCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 5667777665543 67999999999999999999999999999999999999888654
No 282
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.27 E-value=0.065 Score=54.49 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=73.8
Q ss_pred CCeEEEEcCCCchhHHHHHHc--------------CCeEEEEeCCH---HHHHHHHhcCC--------------------
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--------------GHQWIGLDISQ---SMLNIALEREV-------------------- 94 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--------------g~~v~gvDis~---~ml~~a~~~~~-------------------- 94 (291)
..+|||+|=|+|.....+.+. -.+++.++..+ ..+..+....+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 579999999999866554421 14899999533 33333322111
Q ss_pred ----------cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 043626 95 ----------EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 95 ----------~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~ 164 (291)
..+++.+|+.+.++--...||+++.- +-....||.-=-..+|..++++++|||.++-..
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD--------~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLD--------GFAPAKNPDMWSPNLFNALARLARPGATLATFT--- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeC--------CCCCccChhhccHHHHHHHHHHhCCCCEEEEee---
Confidence 13456677654444223568888853 222223444334789999999999999887432
Q ss_pred ChHHHHHHHHHHHHcCCCC
Q 043626 165 SVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 165 ~~~~~~~i~~~~~~aGF~~ 183 (291)
....+...|..+||..
T Consensus 207 ---~a~~vr~~l~~~GF~v 222 (662)
T PRK01747 207 ---SAGFVRRGLQEAGFTV 222 (662)
T ss_pred ---hHHHHHHHHHHcCCee
Confidence 4456777888999964
No 283
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.27 E-value=0.011 Score=54.50 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=80.9
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC-------c-------ceEEE
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV-------E-------GDLLL 100 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~-------~-------~~~~~ 100 (291)
++.--..+.....+ +..|+|--.|||.+....+..|..|+|.||+-.|+...+.... + .+++.
T Consensus 195 eLSli~AN~Amv~p---GdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~ 271 (421)
T KOG2671|consen 195 ELSLIMANQAMVKP---GDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271 (421)
T ss_pred hHHHHHhhhhccCC---CCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence 44333334434444 7899999999999999999999999999999988874322111 1 47788
Q ss_pred ccCCCCCCCC-CCcccEEEECCchhhhc---------------cccccCCchHHH-------HHHHHHHHHHhccCCcEE
Q 043626 101 GDMGQGLGLR-PGVVDGAISISAVQWLC---------------NADKASHEPRLR-------LKAFFGSLYRCLARGARA 157 (291)
Q Consensus 101 ~D~~~~~~~~-~~~fD~Vis~~~l~~l~---------------~~~~~~~~p~~~-------l~~~l~~l~~~LkpgG~l 157 (291)
+|... -++. ...||.|||.....-=. .+....|-|... +...+.-.++.|.-||++
T Consensus 272 ~D~sn-~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrl 350 (421)
T KOG2671|consen 272 ADFSN-PPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRL 350 (421)
T ss_pred ecccC-cchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceE
Confidence 88744 3333 45899999874332100 011112222222 255667778999999999
Q ss_pred EEEEc
Q 043626 158 VFQIY 162 (291)
Q Consensus 158 v~~~~ 162 (291)
++.+.
T Consensus 351 v~w~p 355 (421)
T KOG2671|consen 351 VFWLP 355 (421)
T ss_pred EEecC
Confidence 99874
No 284
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.04 E-value=0.036 Score=50.60 Aligned_cols=126 Identities=18% Similarity=0.112 Sum_probs=83.7
Q ss_pred eEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC--CCCCCcccEEEECCchhhhcccc
Q 043626 54 LLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL--GLRPGVVDGAISISAVQWLCNAD 130 (291)
Q Consensus 54 ~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~--~~~~~~fD~Vis~~~l~~l~~~~ 130 (291)
+++|+-||.|.+..-|...| ..+.++|+++.+.+.-+.++. ....+|+.+.. .++. .+|+++....-|-+..+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag 78 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAG 78 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEeccc
Confidence 68999999999999999998 678999999999999999988 78888985422 2333 599999876666544332
Q ss_pred --ccCCchHHHHHHHHHHHHHhccCCcEEEEE-EcC----CChHHHHHHHHHHHHcCCCC
Q 043626 131 --KASHEPRLRLKAFFGSLYRCLARGARAVFQ-IYP----ESVAQRELILGAAMRAGFAG 183 (291)
Q Consensus 131 --~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~-~~~----~~~~~~~~i~~~~~~aGF~~ 183 (291)
+...+++..+-.-+-.+...++|.- +++. +.. .+......+...+...||.-
T Consensus 79 ~~~~~~d~r~~L~~~~~~~v~~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v 137 (335)
T PF00145_consen 79 KRKGFDDPRNSLFFEFLRIVKELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYNV 137 (335)
T ss_dssp THHCCCCHTTSHHHHHHHHHHHHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEE
T ss_pred cccccccccchhhHHHHHHHhhccceE-EEecccceeeccccccccccccccccccceee
Confidence 2223444434333445556678864 4443 221 12356788999999999864
No 285
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.74 E-value=0.077 Score=49.32 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=60.7
Q ss_pred CCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCCcc-----eEEEccCCC-CCCCC-CCcccEEEECC
Q 043626 52 PRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREVEG-----DLLLGDMGQ-GLGLR-PGVVDGAISIS 121 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~~~-----~~~~~D~~~-~~~~~-~~~fD~Vis~~ 121 (291)
+.+|||+|.|+|.-.-++-... ..++.++.|+..-++......++ ++-..|+.. -++++ ...|++||.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~-- 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV-- 191 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh--
Confidence 5689999999998766655432 56777788887655544333222 222222211 12332 235566554
Q ss_pred chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
++-|..+ ...+.+...++.+..++.|||.+|+.--
T Consensus 192 -~~eLl~d-----~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 -LDELLPD-----GNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred -hhhhccc-----cCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 4433221 1112256689999999999999998753
No 286
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.72 E-value=0.057 Score=46.73 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCeEEEEcCCCchhHHHHHHc----C--CeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCC-----CCC--CCCcc
Q 043626 52 PRLLLDIGCGSGLSGETLSEN----G--HQWIGLDISQSMLNIALERE----VEGDLLLGDMGQG-----LGL--RPGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~----g--~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~-----~~~--~~~~f 114 (291)
|..|+|+|.-.|.+...++.. | ..|+||||...-........ ..+.++.+|.... +.. .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 679999999999988877642 2 79999999654443332222 4589999986431 111 12344
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
.+||.-+.-.| .+ ....|.....+|++|+++|+
T Consensus 113 vlVilDs~H~~-~h-----------vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 113 VLVILDSSHTH-EH-----------VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp EEEEESS-----SS-----------HHHHHHHHHHT--TT-EEEE
T ss_pred eEEEECCCccH-HH-----------HHHHHHHhCccCCCCCEEEE
Confidence 46664322111 11 55777889999999999998
No 287
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.59 E-value=0.1 Score=46.11 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHH---HHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CeEEEEeCCH----HHHHHHHhcCCcceE
Q 043626 29 IIDIQAKLSERAL---ELLALPDDGVPRLLLDIGCGSGLSGETLSEN-G--HQWIGLDISQ----SMLNIALEREVEGDL 98 (291)
Q Consensus 29 ~~~iq~~~~~~~l---elL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g--~~v~gvDis~----~ml~~a~~~~~~~~~ 98 (291)
+...+..++..++ +-+.+++ +.+||-+|+++|....++++. | .-|++|+.|. ..+..|+++ .++-.
T Consensus 134 WnPfrSKLAA~I~gGvdnihikp---GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-tNiiP 209 (317)
T KOG1596|consen 134 WNPFRSKLAAGILGGVDNIHIKP---GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-TNIIP 209 (317)
T ss_pred eChHHHHHHHHhhcCccceeecC---CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-CCcee
Confidence 3445667776665 3344555 789999999999999999987 3 6899999887 455555554 44555
Q ss_pred EEccCCCCCC--CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 99 LLGDMGQGLG--LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 99 ~~~D~~~~~~--~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
+..|+..... ..-+-.|+|++.-+ ++.....+.-+....|++||-+++++.
T Consensus 210 IiEDArhP~KYRmlVgmVDvIFaDva-------------qpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 210 IIEDARHPAKYRMLVGMVDVIFADVA-------------QPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred eeccCCCchheeeeeeeEEEEeccCC-------------CchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 6667644222 22346788876411 111133445577889999999999764
No 288
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.23 E-value=0.05 Score=50.05 Aligned_cols=83 Identities=24% Similarity=0.227 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC----cceEEEccCCCCC-
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV----EGDLLLGDMGQGL- 107 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~----~~~~~~~D~~~~~- 107 (291)
.|...+++.|...+ +..+||.--|.|..+..+++. +..++|+|.++.+++.|.++.. ...++..++.+..
T Consensus 7 Vll~Evl~~L~~~~---~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~ 83 (310)
T PF01795_consen 7 VLLKEVLEALNPKP---GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE 83 (310)
T ss_dssp TTHHHHHHHHT--T---T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH
T ss_pred ccHHHHHHhhCcCC---CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH
Confidence 46778899998776 679999999999999999986 4899999999999999998764 2456666553310
Q ss_pred ---CC-CCCcccEEEEC
Q 043626 108 ---GL-RPGVVDGAISI 120 (291)
Q Consensus 108 ---~~-~~~~fD~Vis~ 120 (291)
.. ....+|+|+.-
T Consensus 84 ~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 84 YLKELNGINKVDGILFD 100 (310)
T ss_dssp HHHHTTTTS-EEEEEEE
T ss_pred HHHHccCCCccCEEEEc
Confidence 12 23567777753
No 289
>PHA01634 hypothetical protein
Probab=95.18 E-value=0.11 Score=41.58 Aligned_cols=68 Identities=12% Similarity=-0.062 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCcceEEEccCC-CCCCCCCCcccEEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALEREVEGDLLLGDMG-QGLGLRPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~-~~~~~~~~~fD~Vis 119 (291)
+.+|+|||.+.|.++..++-.| ..|++++.++...+...++.....+..--++ ...+-.-+.||+.+.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 5699999999999999999998 7999999999999999886544222211111 112324567888775
No 290
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.17 E-value=0.19 Score=49.44 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=62.4
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC----------C--C--------C
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG----------L--G--------L 109 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~----------~--~--------~ 109 (291)
+.+||=+|||. |..+...+.. |..|+++|.++..++.+++.. .+++..|..+. + . +
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG--A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG--AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--CeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 78999999997 6666666654 789999999999999998743 33332221110 0 0 0
Q ss_pred CC--CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 110 RP--GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 110 ~~--~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
.. ..+|+||.......-.. ...+.+...+.++|||.++..
T Consensus 243 ~~~~~gaDVVIetag~pg~~a-----------P~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPA-----------PKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HhccCCCCEEEECCCCCcccC-----------cchHHHHHHHhcCCCCEEEEE
Confidence 11 36899997543321101 223358899999999998863
No 291
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.97 E-value=0.28 Score=45.21 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=77.0
Q ss_pred HHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC--------C
Q 043626 39 RALELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQG--------L 107 (291)
Q Consensus 39 ~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~--------~ 107 (291)
++..+-..+. +.+||-+|+|+ |..+...++. | ..|+.+|+++.-|+.|++-... .+.-+.... +
T Consensus 160 HAcr~~~vk~---Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~--~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 160 HACRRAGVKK---GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGAT--VTDPSSHKSSPQELAELV 234 (354)
T ss_pred hhhhhcCccc---CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCe--EEeeccccccHHHHHHHH
Confidence 3444445555 78999999998 7777777776 5 7999999999999999984332 221111000 0
Q ss_pred --CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCC
Q 043626 108 --GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGF 181 (291)
Q Consensus 108 --~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF 181 (291)
.+....||+++.-+-++ ..++.....|+.||.+++.-+.....+...+.-.+++.-+
T Consensus 235 ~~~~g~~~~d~~~dCsG~~-----------------~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~ 293 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAE-----------------VTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDL 293 (354)
T ss_pred HhhccccCCCeEEEccCch-----------------HHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeee
Confidence 11123488888665543 4566678889999998887666554444433333333333
No 292
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.89 E-value=0.12 Score=47.24 Aligned_cols=58 Identities=28% Similarity=0.306 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC---CeEEEEeCCHHHHHHHHhcCC
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG---HQWIGLDISQSMLNIALEREV 94 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g---~~v~gvDis~~ml~~a~~~~~ 94 (291)
.-+...+++.|...+ +...||.--|-|..+..+.+.. ..++|+|-++.+++.|+++..
T Consensus 9 pVLl~E~i~~L~~~~---~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~ 69 (314)
T COG0275 9 PVLLNEVVELLAPKP---DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK 69 (314)
T ss_pred chHHHHHHHhcccCC---CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh
Confidence 357788999999887 6899999999999999999875 679999999999999998763
No 293
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.78 E-value=0.31 Score=45.08 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=56.0
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEc---cCCCCCCCCCCcccEEEECCchhh
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLG---DMGQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~---D~~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
+.+||=+|||. |..+..+++. |. .++++|.++..++.+++.... .++.. ++.+ +....+.+|+|+-...-
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~-~~~~~g~~D~vid~~G~-- 245 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD-KLVNPQNDDLDH-YKAEKGYFDVSFEVSGH-- 245 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc-EEecCCcccHHH-HhccCCCCCEEEECCCC--
Confidence 56888888863 4454555544 65 799999999999998875432 12211 1111 11112358988854221
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|++||++++.
T Consensus 246 ---------------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 246 ---------------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ---------------HHHHHHHHHHhhcCCEEEEE
Confidence 13566778899999998875
No 294
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.78 E-value=0.052 Score=49.27 Aligned_cols=101 Identities=21% Similarity=0.205 Sum_probs=74.2
Q ss_pred CCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCc---------ceEEEccCCCCCC-CCCCcccEEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALEREVE---------GDLLLGDMGQGLG-LRPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~---------~~~~~~D~~~~~~-~~~~~fD~Vis 119 (291)
+..||-||-|-|......+.+- ..+.-+||....++..++-.+. +.+..+|-...+. ...++||+||.
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~ 201 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT 201 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence 7899999999999888877763 7899999999999988875543 5667776433332 33789999996
Q ss_pred CCchhhhccccccCCchHHH--HHHHHHHHHHhccCCcEEEEEE
Q 043626 120 ISAVQWLCNADKASHEPRLR--LKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 120 ~~~l~~l~~~~~~~~~p~~~--l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
-+.=.- -|... .+.++..+.+.||++|+++.+-
T Consensus 202 dssdpv---------gpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 202 DSSDPV---------GPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ecCCcc---------chHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 532111 12222 4778999999999999999863
No 295
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.78 E-value=0.033 Score=50.24 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=31.5
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHH
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLN 87 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~ 87 (291)
+.+|||+|||+|.-+......| ..+...|.+...++
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred CceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 5699999999999998888887 88999999888773
No 296
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=94.62 E-value=0.063 Score=51.55 Aligned_cols=103 Identities=22% Similarity=0.169 Sum_probs=67.2
Q ss_pred CCeEEEEcCCCchhHHH--HHHcC--CeEEEEeCCHHHHHHHHhcCCc----ceEEEcc---CCCCCCCCCC-cccEEEE
Q 043626 52 PRLLLDIGCGSGLSGET--LSENG--HQWIGLDISQSMLNIALEREVE----GDLLLGD---MGQGLGLRPG-VVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~--L~~~g--~~v~gvDis~~ml~~a~~~~~~----~~~~~~D---~~~~~~~~~~-~fD~Vis 119 (291)
+..++|+|.|.|.-+-+ +...+ ..++.||-|..|+........+ +..+... ....+|.... .||+||+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 67899999887654433 33333 6899999999999988766544 1222211 1123454443 4999999
Q ss_pred CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.+.++++.+ +..++...-.-...+.++|+.+++.-
T Consensus 281 ah~l~~~~s-------~~~R~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 281 AHKLHELGS-------KFSRLDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeeeccCC-------chhhhhhhHHHHHhccCCCceEEEEe
Confidence 999999866 33334444445667788888888753
No 297
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.53 E-value=0.2 Score=41.92 Aligned_cols=79 Identities=18% Similarity=0.085 Sum_probs=53.6
Q ss_pred CCCCcccEEEECCchhhhccc----cccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCc
Q 043626 109 LRPGVVDGAISISAVQWLCNA----DKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGG 184 (291)
Q Consensus 109 ~~~~~fD~Vis~~~l~~l~~~----~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~ 184 (291)
...+.||.||-+ +.|+... +.....-+.-+..||.++..+|+++|.+.++.....+...-.|..++.++||.-.
T Consensus 71 ~~~~~FDrIiFN--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 71 LKNQRFDRIIFN--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV 148 (166)
T ss_pred ccCCcCCEEEEe--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence 457899999988 4454311 1111112233689999999999999999999876555455567788999999753
Q ss_pred EEEeC
Q 043626 185 VVVDY 189 (291)
Q Consensus 185 ~~~~~ 189 (291)
..+.|
T Consensus 149 ~~~~F 153 (166)
T PF10354_consen 149 RKVPF 153 (166)
T ss_pred EEecC
Confidence 33333
No 298
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=94.48 E-value=0.073 Score=52.68 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=78.3
Q ss_pred CCCcccCCchhhccccccchhHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc---CCeEEEEeCCHHH
Q 043626 9 APPEIFYDDTEARKYTSSSRIIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN---GHQWIGLDISQSM 85 (291)
Q Consensus 9 ~ppe~fy~~~~a~~Y~~~~~~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~---g~~v~gvDis~~m 85 (291)
.-++.||.-..-.-|-+.+.+--+|-.- ...+-.+ ...|||+||.+|.+....++. |.-|+|||+-|-
T Consensus 10 ~r~Dk~Y~lAke~GyrsRsaFKLlQln~------ky~fl~~--a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi- 80 (780)
T KOG1098|consen 10 GRLDKYYRLAKELGYRSRSAFKLLQLNK------KYKFLEK--AHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI- 80 (780)
T ss_pred ccchHHHHHHHHhchhHHHHHHHHHHHH------Hhccccc--cchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-
Confidence 3456677655555666555443333211 1112222 568999999999999998876 588999998662
Q ss_pred HHHHHhcCCcceEEEccCCCCC---C----CCCCcccEEEECCch----hhhccccccCCchHHHHHHHHHHHHHhccCC
Q 043626 86 LNIALEREVEGDLLLGDMGQGL---G----LRPGVVDGAISISAV----QWLCNADKASHEPRLRLKAFFGSLYRCLARG 154 (291)
Q Consensus 86 l~~a~~~~~~~~~~~~D~~~~~---~----~~~~~fD~Vis~~~l----~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg 154 (291)
.-.+++.-++.|++... + ...-..|+|++-.+. .|+.++-. ...-....+.-....|..|
T Consensus 81 -----kp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~----q~~L~l~al~LA~~~l~~~ 151 (780)
T KOG1098|consen 81 -----KPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQ----QACLTLRALKLATEFLAKG 151 (780)
T ss_pred -----ccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHH----hhHHHHHHHHHHHHHHHhc
Confidence 12234444555553310 0 111234666654432 34433210 0111245566677889999
Q ss_pred cEEEEEEcCCC
Q 043626 155 ARAVFQIYPES 165 (291)
Q Consensus 155 G~lv~~~~~~~ 165 (291)
|.++-.+++..
T Consensus 152 g~fvtkvfrs~ 162 (780)
T KOG1098|consen 152 GTFVTKVFRSE 162 (780)
T ss_pred CccccccccCC
Confidence 99887766643
No 299
>PRK13699 putative methylase; Provisional
Probab=94.43 E-value=0.083 Score=46.49 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=48.9
Q ss_pred eEEEccCCCCC-CCCCCcccEEEECCchhh-hcc-ccc--cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHH
Q 043626 97 DLLLGDMGQGL-GLRPGVVDGAISISAVQW-LCN-ADK--ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQREL 171 (291)
Q Consensus 97 ~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~-l~~-~~~--~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~ 171 (291)
.++++|..+.+ .++++++|+||......- ..+ ..+ ....-..-+..++.+++++|||||.+++-.... +...
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~---~~~~ 79 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN---RVDR 79 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc---cHHH
Confidence 45666654433 456788899887633310 000 000 001111224688999999999999887643222 2345
Q ss_pred HHHHHHHcCCCC
Q 043626 172 ILGAAMRAGFAG 183 (291)
Q Consensus 172 i~~~~~~aGF~~ 183 (291)
+...+.++||.-
T Consensus 80 ~~~al~~~GF~l 91 (227)
T PRK13699 80 FMAAWKNAGFSV 91 (227)
T ss_pred HHHHHHHCCCEE
Confidence 667788999974
No 300
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.43 E-value=0.12 Score=49.04 Aligned_cols=94 Identities=19% Similarity=0.121 Sum_probs=65.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCC-------cceEEEccCCCCCCCCCCcccEEEECC
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALEREV-------EGDLLLGDMGQGLGLRPGVVDGAISIS 121 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~-------~~~~~~~D~~~~~~~~~~~fD~Vis~~ 121 (291)
+.+|||.=+|||.=+...+.. + ..|+.-|+|+++++..+.|.. .+.+.+.|+...+......||+|=..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 468999999999977666654 3 789999999999999888742 14566677633333356789987632
Q ss_pred chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
|......|+..+.+.++.||.+.++
T Consensus 129 --------------PfGSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 129 --------------PFGSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp ---------------SS--HHHHHHHHHHEEEEEEEEEE
T ss_pred --------------CCCCccHhHHHHHHHhhcCCEEEEe
Confidence 4444668999999999999999995
No 301
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.40 E-value=0.12 Score=48.26 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=68.0
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-GH-QWIGLDISQSMLNIALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+..|||-=+|||.=+..++.. +. .++.-|||+.+.+..++|.. +...+..|....+.-....||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec-----
Confidence 459999999999988777755 44 89999999999999988653 2455555653333322466776542
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+|.....-|+..+.+.++.||.+.++
T Consensus 128 ----------DPFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 128 ----------DPFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred ----------CCCCCCchHHHHHHHHhhcCCEEEEE
Confidence 23333567899999999999999984
No 302
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.43 Score=39.17 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=74.2
Q ss_pred HHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC
Q 043626 36 LSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG 108 (291)
Q Consensus 36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~ 108 (291)
-.+.++.++.-.+ ..+.+|||.|-|.+....++.| ...+|+++++-.+..++-+. ....|..-|+-. ..
T Consensus 60 Qv~nVLSll~~n~---~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK-~d 135 (199)
T KOG4058|consen 60 QVENVLSLLRGNP---KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK-VD 135 (199)
T ss_pred HHHHHHHHccCCC---CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh-cc
Confidence 3455566664433 5799999999999999999998 78999999998887776432 123455555411 22
Q ss_pred CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHH
Q 043626 109 LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRE 170 (291)
Q Consensus 109 ~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~ 170 (291)
+ ..|.-|+...+-+-+ ..+-..+..-|..+.+++..-+|-..-+++
T Consensus 136 l--~dy~~vviFgaes~m--------------~dLe~KL~~E~p~nt~vvacRFPLP~w~le 181 (199)
T KOG4058|consen 136 L--RDYRNVVIFGAESVM--------------PDLEDKLRTELPANTRVVACRFPLPTWQLE 181 (199)
T ss_pred c--cccceEEEeehHHHH--------------hhhHHHHHhhCcCCCeEEEEecCCCccchH
Confidence 2 334444433333332 345556777888899888776675544443
No 303
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.32 E-value=0.98 Score=44.07 Aligned_cols=130 Identities=11% Similarity=-0.014 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCC-----------------C
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGL-----------------R 110 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~-----------------~ 110 (291)
..+++|+-||.|.+..-+...| ..+.++|+++.+.+.-..++ +....+..|+.+ +.. .
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~-i~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRD-ITLSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhh-Cccccccccchhhhhhhhhcc
Confidence 4689999999999999998888 56788999999988888776 334555566633 211 1
Q ss_pred CCcccEEEECCchhhhcccccc---------C--CchHHHHHHHHHHHHHhccCCcEEEEEE-----cCCChHHHHHHHH
Q 043626 111 PGVVDGAISISAVQWLCNADKA---------S--HEPRLRLKAFFGSLYRCLARGARAVFQI-----YPESVAQRELILG 174 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~---------~--~~p~~~l~~~l~~l~~~LkpgG~lv~~~-----~~~~~~~~~~i~~ 174 (291)
...+|+++..+.-|-+..+-.. . ++++..+-.-+-.+...++|. .+++.- ..........|..
T Consensus 167 ~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk-~fvlENV~gl~s~~~g~~f~~i~~ 245 (467)
T PRK10458 167 IPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA-IFVLENVKNLKSHDKGKTFRIIMQ 245 (467)
T ss_pred CCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC-EEEEeCcHhhhcccccHHHHHHHH
Confidence 1257988877655544322110 0 123332322222344455676 334421 1123346778899
Q ss_pred HHHHcCCCC
Q 043626 175 AAMRAGFAG 183 (291)
Q Consensus 175 ~~~~aGF~~ 183 (291)
.|...||.-
T Consensus 246 ~L~~lGY~v 254 (467)
T PRK10458 246 TLDELGYDV 254 (467)
T ss_pred HHHHcCCeE
Confidence 999999974
No 304
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.16 E-value=0.4 Score=45.25 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=62.5
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCC----CCC-CC-CCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMG----QGL-GL-RPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~----~~~-~~-~~~~fD~Vis~~~ 122 (291)
+.+||.+|||+ |..+..+++. |. .++++|.++.+++.+++... ..++...-. +.+ .+ ....+|+|+....
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 67899999987 7777777765 54 69999999999999887632 233221110 001 11 1236899886421
Q ss_pred -----------hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 123 -----------VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 123 -----------l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
++|+. .|.......+..+.++|+++|++++.
T Consensus 264 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 264 MEAHGSPLHKAEQALL-------KLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred Cccccccccccccccc-------ccccCchHHHHHHHHHhccCCEEEEE
Confidence 11110 00000135678889999999999875
No 305
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.06 E-value=0.099 Score=45.93 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhCCCCC---CCCCeEEEEcCCCchhHHHHH--HcCCeEEEEeCCHHHHHHHHhcCCc-------ceEEE
Q 043626 33 QAKLSERALELLALPDD---GVPRLLLDIGCGSGLSGETLS--ENGHQWIGLDISQSMLNIALEREVE-------GDLLL 100 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~---~~~~~VLDiGcGsG~~~~~L~--~~g~~v~gvDis~~ml~~a~~~~~~-------~~~~~ 100 (291)
.......+.++|....+ +....+||||.|.-.+=-.+- +.|..++|.||++..++.|+..... +.+..
T Consensus 57 RAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~ 136 (292)
T COG3129 57 RADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRR 136 (292)
T ss_pred hhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEe
Confidence 44566677777753322 125689999988654333332 3368999999999999988765421 33333
Q ss_pred ccCCC----CCCCCCCcccEEEECCchh
Q 043626 101 GDMGQ----GLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 101 ~D~~~----~~~~~~~~fD~Vis~~~l~ 124 (291)
..-.. ++--..+.||.++||..+|
T Consensus 137 qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 137 QKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred ccCccccccccccccceeeeEecCCCcc
Confidence 22111 1111257899999998887
No 306
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.98 E-value=0.036 Score=45.94 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=60.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHH-HHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNI-ALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~-a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+.++|-+|...=..-.....+| ..+.-|+.++--++. .+.+. ..+...|+.....--.++||.+.|.++++|.--.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--SSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--ccccHHHHHHHHHHhhccchhhheechhcccccc
Confidence 4577778877554444444566 678888865411110 01111 1111122211111225789999999999986421
Q ss_pred ccc-CCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 130 DKA-SHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 130 ~~~-~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.-. .-+|...+ +.+..+..+||+||.+++.+
T Consensus 80 RYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 80 RYGDPIDPIGDL-RAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred ccCCCCCccccH-HHHHHHHHhhccCCeEEEEe
Confidence 100 12344434 56778999999999999975
No 307
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=1.5 Score=41.14 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=38.8
Q ss_pred HHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc----------CCeEEEEeCCHHHHHHHHhcCC
Q 043626 39 RALELLALPDDGVPRLLLDIGCGSGLSGETLSEN----------GHQWIGLDISQSMLNIALEREV 94 (291)
Q Consensus 39 ~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~----------g~~v~gvDis~~ml~~a~~~~~ 94 (291)
.+++.+..|. +..|++||.|.|.+..-++.. ...+.-|++|+.....-+++..
T Consensus 68 ~~wq~~g~p~---~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 68 QLWQELGRPA---PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred HHHHHhcCCC---CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 3444444554 678999999999988777642 3689999999998776665543
No 308
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.66 E-value=1 Score=40.37 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCC--------cceEEEccC
Q 043626 33 QAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREV--------EGDLLLGDM 103 (291)
Q Consensus 33 q~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~--------~~~~~~~D~ 103 (291)
...+.+.++....... ...|+.+|||-=.-...|... +..|+-+|. |.+++.-++... ...++..|+
T Consensus 66 Rtr~~D~~i~~~~~~g---~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 141 (260)
T TIGR00027 66 RTRFFDDFLLAAVAAG---IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDL 141 (260)
T ss_pred HHHHHHHHHHHHHhcC---CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCc
Confidence 3444444444322122 347999999987777766543 478888887 445543333322 246677777
Q ss_pred CCCC-------CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 104 GQGL-------GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 104 ~~~~-------~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
...+ .|.+...-++|+-.++.||.. .....+|..+.....||+.+++....
T Consensus 142 ~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~---------~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 142 RQDWPAALAAAGFDPTAPTAWLWEGLLMYLTE---------EAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred hhhHHHHHHhCCCCCCCCeeeeecchhhcCCH---------HHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 4211 244455668888899999843 44788999999988899999998754
No 309
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.64 E-value=1 Score=40.96 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=57.3
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~~~fD~Vis~~~l~ 124 (291)
+..||..|||. |..+..++. .|..+++++.++...+.+++... +.+..+-.... ......+|+|+.....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~- 242 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGA--DEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT- 242 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC--CEEEcCCCcCHHHHHHHhcCCCceEEEECCCC-
Confidence 56888888763 555555555 47889999999999988865432 22222211111 1224568988854211
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|.++..
T Consensus 243 ----------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 243 ----------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ----------------HHHHHHHHHHhhcCCEEEEE
Confidence 24567788999999999864
No 310
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.40 E-value=0.23 Score=46.48 Aligned_cols=92 Identities=23% Similarity=0.206 Sum_probs=62.3
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCcceEEEc---cCCC-CCCCCC-CcccEEEECCch
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALEREVEGDLLLG---DMGQ-GLGLRP-GVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~~~~~~~---D~~~-~~~~~~-~~fD~Vis~~~l 123 (291)
+.+|+=+|||+ |+++..+++. | ..|+.+|.++.-++.|++....-.+... +... ...... ..+|+|+=....
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 34899999998 8887777766 5 7999999999999999884432111111 0000 001112 368999854331
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
..++..+..++++||.+++.
T Consensus 249 -----------------~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 249 -----------------PPALDQALEALRPGGTVVVV 268 (350)
T ss_pred -----------------HHHHHHHHHHhcCCCEEEEE
Confidence 24778899999999999874
No 311
>PRK11524 putative methyltransferase; Provisional
Probab=93.01 E-value=0.16 Score=46.16 Aligned_cols=84 Identities=14% Similarity=0.026 Sum_probs=47.7
Q ss_pred ceEEEccCCCCC-CCCCCcccEEEECCchhhhcc-cccc-CCc---hHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHH
Q 043626 96 GDLLLGDMGQGL-GLRPGVVDGAISISAVQWLCN-ADKA-SHE---PRLRLKAFFGSLYRCLARGARAVFQIYPESVAQR 169 (291)
Q Consensus 96 ~~~~~~D~~~~~-~~~~~~fD~Vis~~~l~~l~~-~~~~-~~~---p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~ 169 (291)
..++++|..+.+ .+++++||+||+...+.--.+ .+.. ... -..-+..+|..++++|||||.+++..... .+
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~---~~ 85 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE---NM 85 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch---hh
Confidence 456777765432 345788999998744321000 0000 000 00114678999999999999999864322 22
Q ss_pred HHHHHHHHHcCCCC
Q 043626 170 ELILGAAMRAGFAG 183 (291)
Q Consensus 170 ~~i~~~~~~aGF~~ 183 (291)
. ....+.+.||.-
T Consensus 86 ~-~~~~~~~~~f~~ 98 (284)
T PRK11524 86 P-FIDLYCRKLFTI 98 (284)
T ss_pred h-HHHHHHhcCcce
Confidence 2 234566778753
No 312
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.81 E-value=0.38 Score=47.04 Aligned_cols=134 Identities=10% Similarity=0.101 Sum_probs=86.8
Q ss_pred hhhccccccch----hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHc------CCeEEEEeCCHHHHH
Q 043626 18 TEARKYTSSSR----IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSEN------GHQWIGLDISQSMLN 87 (291)
Q Consensus 18 ~~a~~Y~~~~~----~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~------g~~v~gvDis~~ml~ 87 (291)
-++..|....+ ...+|+.+...++++......+....|+=+|+|-|-+.....+. -..+++|+-+|.++-
T Consensus 330 Le~~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAiv 409 (649)
T KOG0822|consen 330 LENQTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIV 409 (649)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhh
Confidence 55666665432 44566777777777654332112457899999999877655432 268999999999887
Q ss_pred HHHhcCC-----cceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 88 IALEREV-----EGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 88 ~a~~~~~-----~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
....+.. .+.++-.||.. .+.+....|++||- .|.-+-|-+- -...|..+-+.|||.|..+=+-
T Consensus 410 tL~~~n~~~W~~~Vtii~~DMR~-w~ap~eq~DI~VSE-LLGSFGDNEL--------SPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 410 TLQNRNFECWDNRVTIISSDMRK-WNAPREQADIIVSE-LLGSFGDNEL--------SPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhhhhchhhhcCeeEEEeccccc-cCCchhhccchHHH-hhccccCccC--------CHHHHHHHHhhcCCCceEccch
Confidence 6665432 37889999955 44223789998863 2222222111 1367888999999999877543
No 313
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.54 E-value=0.8 Score=42.42 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=54.4
Q ss_pred CCeEEEEcCCC-chhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN--G-HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+.+||=+|||. |.++..++.. | ..++++|.++.-++.++.. .......++.+ ...+|+|+-..--..
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~--~~~~~~~~~~~-----~~g~d~viD~~G~~~-- 234 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA--DETYLIDDIPE-----DLAVDHAFECVGGRG-- 234 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc--Cceeehhhhhh-----ccCCcEEEECCCCCc--
Confidence 67999999875 5555555542 4 6899999999888888651 11111111111 114788884321000
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
....+....++|++||++++.
T Consensus 235 ------------~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 235 ------------SQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred ------------cHHHHHHHHHhCcCCcEEEEE
Confidence 124577788999999999864
No 314
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.49 E-value=2 Score=39.62 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=53.9
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+.+||=.|+|. |.....+++ .|..+++++.++.-++.+++..... ++ +..+ ...+.+|+++-....
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-vi--~~~~---~~~~~~d~~i~~~~~------ 233 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-AG--GAYD---TPPEPLDAAILFAPA------ 233 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-ec--cccc---cCcccceEEEECCCc------
Confidence 67899999753 333344444 3778999999999888887754331 11 1111 112357876633211
Q ss_pred cccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+....++|++||++++.
T Consensus 234 -----------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 234 -----------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred -----------HHHHHHHHHhhCCCcEEEEE
Confidence 13567788999999999864
No 315
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.21 E-value=1.1 Score=35.07 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=46.1
Q ss_pred CCeEEEEcCCCch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGSGL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGsG~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~ 122 (291)
..+|+++|.|-=. .+..|+++|..++++||.+. .|. ..+.++..|+...-----...|+|.|+-.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~---~g~~~v~DDitnP~~~iY~~A~lIYSiRp 79 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP---EGLRFVVDDITNPNISIYEGADLIYSIRP 79 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc---ccceEEEccCCCccHHHhhCccceeecCC
Confidence 4599999988755 67888899999999999887 221 34688888985421111235688888744
No 316
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.21 E-value=1 Score=38.21 Aligned_cols=116 Identities=23% Similarity=0.288 Sum_probs=58.3
Q ss_pred eEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc----------------ceEEE-ccCCCCCCCCCCcc
Q 043626 54 LLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVE----------------GDLLL-GDMGQGLGLRPGVV 114 (291)
Q Consensus 54 ~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~----------------~~~~~-~D~~~~~~~~~~~f 114 (291)
+|-=||.|- |. ++..|++.|++|+|+|+++.-++...+-... ..+.. .|... .....
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~----ai~~a 77 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEE----AIKDA 77 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH----HHHH-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhh----hhhcc
Confidence 455567664 43 4466678899999999999988877653221 12221 12100 01234
Q ss_pred cEEEE-CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE--EcCCChHHHHHHHHHHHHcC
Q 043626 115 DGAIS-ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ--IYPESVAQRELILGAAMRAG 180 (291)
Q Consensus 115 D~Vis-~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~--~~~~~~~~~~~i~~~~~~aG 180 (291)
|+++. ..+... .+ ..-....+...+..+...|+++..+++. ++|.. ..+.+...+.+.+
T Consensus 78 dv~~I~VpTP~~---~~--~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt--t~~~~~~ile~~~ 139 (185)
T PF03721_consen 78 DVVFICVPTPSD---ED--GSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT--TEELLKPILEKRS 139 (185)
T ss_dssp SEEEE----EBE---TT--TSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH--HHHHHHHHHHHHC
T ss_pred ceEEEecCCCcc---cc--CCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee--ehHhhhhhhhhhc
Confidence 55553 222111 10 0111122688899999999998777773 33332 2224445555443
No 317
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=91.69 E-value=2.1 Score=38.26 Aligned_cols=118 Identities=17% Similarity=0.082 Sum_probs=69.0
Q ss_pred CCeEEEEcCCCchhHHHHHH----c---CCeEEEEeCCH--------------------------HHHHHHHhcCC----
Q 043626 52 PRLLLDIGCGSGLSGETLSE----N---GHQWIGLDISQ--------------------------SMLNIALEREV---- 94 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~----~---g~~v~gvDis~--------------------------~ml~~a~~~~~---- 94 (291)
+.-|+|+||=.|.++..++. . +..++++|.=+ ..++..++++.
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 66999999999987755432 1 25688888321 12344444432
Q ss_pred ---cceEEEccCCCCCCC-CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHH
Q 043626 95 ---EGDLLLGDMGQGLGL-RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRE 170 (291)
Q Consensus 95 ---~~~~~~~D~~~~~~~-~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~ 170 (291)
++.++.+.+.+.+|- +...+-++ ||. ...++| ....|..++..|.|||.++|..|.. +....
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll-------~lD---~DlYes---T~~aLe~lyprl~~GGiIi~DDY~~-~gcr~ 220 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALL-------HLD---CDLYES---TKDALEFLYPRLSPGGIIIFDDYGH-PGCRK 220 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEE-------EE------SHHH---HHHHHHHHGGGEEEEEEEEESSTTT-HHHHH
T ss_pred CcccEEEECCcchhhhccCCCccEEEE-------EEe---ccchHH---HHHHHHHHHhhcCCCeEEEEeCCCC-hHHHH
Confidence 357777877555552 22222222 221 112233 5688999999999999999998877 66677
Q ss_pred HHHHHHHHcCCCC
Q 043626 171 LILGAAMRAGFAG 183 (291)
Q Consensus 171 ~i~~~~~~aGF~~ 183 (291)
.+.+.+.+.|...
T Consensus 221 AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 221 AVDEFRAEHGITD 233 (248)
T ss_dssp HHHHHHHHTT--S
T ss_pred HHHHHHHHcCCCC
Confidence 7888888888876
No 318
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.60 E-value=0.23 Score=47.46 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=36.0
Q ss_pred CeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHHHHHHHhc
Q 043626 53 RLLLDIGCGSGLSGETLSENG-HQWIGLDISQSMLNIALER 92 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~ml~~a~~~ 92 (291)
..|||||+|||+++......| -.|++++.-..|.+.|+..
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKI 108 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHH
Confidence 479999999999999888887 6899999999999999874
No 319
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.22 E-value=1.7 Score=38.99 Aligned_cols=91 Identities=25% Similarity=0.282 Sum_probs=54.1
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEc-cCCCCC-CC-CCCcccEEEECCchhh
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLG-DMGQGL-GL-RPGVVDGAISISAVQW 125 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~-D~~~~~-~~-~~~~fD~Vis~~~l~~ 125 (291)
+..||=+|+|+ |..+..+++. |.. ++++|.++.-++.+++.... .++.. +....+ .. ....+|+|+-...-
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~~~~~~~g~d~vid~~G~-- 197 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT-ALAEPEVLAERQGGLQNGRGVDVALEFSGA-- 197 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc-EecCchhhHHHHHHHhCCCCCCEEEECCCC--
Confidence 66888888764 4444445544 654 99999999988888775432 11111 100000 00 12358888853211
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|++++.
T Consensus 198 ---------------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 198 ---------------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred ---------------hHHHHHHHHHhcCCCEEEEe
Confidence 13566778899999999864
No 320
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.00 E-value=2.3 Score=39.37 Aligned_cols=89 Identities=20% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeC---CHHHHHHHHhcCCcceEEEccCCCCC--CCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDI---SQSMLNIALEREVEGDLLLGDMGQGL--GLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDi---s~~ml~~a~~~~~~~~~~~~D~~~~~--~~~~~~fD~Vis~~~l~ 124 (291)
+.+||=+|||. |.++..+++. |..+++++. ++.-++.+++.... .+...- +.. ....+.+|+||-...-
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~--~v~~~~-~~~~~~~~~~~~d~vid~~g~- 248 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT--YVNSSK-TPVAEVKLVGEFDLIIEATGV- 248 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE--EecCCc-cchhhhhhcCCCCEEEECcCC-
Confidence 56899999864 5555555554 678999986 67888877764332 221110 100 0012468988854221
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+....++|++||.+++.
T Consensus 249 ----------------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 249 ----------------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred ----------------HHHHHHHHHHccCCcEEEEE
Confidence 13567788999999998764
No 321
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.95 E-value=1.2 Score=39.63 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc----------CCeEEEEeCCHHHHHHHHhcCCc
Q 043626 52 PRLLLDIGCGSGLSGETLSEN----------GHQWIGLDISQSMLNIALEREVE 95 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~----------g~~v~gvDis~~ml~~a~~~~~~ 95 (291)
+..|+|+|+|+|.+...++.. ...++.||+|+.+.+.-+++...
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 579999999999999887753 15899999999998877776643
No 322
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.67 E-value=2.5 Score=36.69 Aligned_cols=91 Identities=23% Similarity=0.198 Sum_probs=56.1
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC----CCCCCcccEEEECCchhh
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL----GLRPGVVDGAISISAVQW 125 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~----~~~~~~fD~Vis~~~l~~ 125 (291)
+.+||.+|+|+ |.....++. .|..+++++.++...+.+...... .++...-.... ....+.+|+|+....-
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~-- 211 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD-HVIDYKEEDLEEELRLTGGGGADVVIDAVGG-- 211 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc-eeccCCcCCHHHHHHHhcCCCCCEEEECCCC--
Confidence 67999999986 444444444 478999999999888877654321 11111100000 0123579999864221
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|.++..
T Consensus 212 ---------------~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 212 ---------------PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred ---------------HHHHHHHHHhcccCCEEEEE
Confidence 13456678889999998864
No 323
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.56 E-value=3.1 Score=31.77 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCCchhHHHHHHc----CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEECCchhhhcccccc
Q 043626 60 CGSGLSGETLSEN----GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISISAVQWLCNADKA 132 (291)
Q Consensus 60 cGsG~~~~~L~~~----g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~~~l~~l~~~~~~ 132 (291)
||.|..+..+++. +..++.+|.++..++.+.... ..++.+|..+.- ...-...|.|++... +
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~---- 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTD-----D---- 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESS-----S----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccC-----C----
Confidence 5666677666643 458999999999998888776 668889985521 122357787776422 1
Q ss_pred CCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCC
Q 043626 133 SHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFA 182 (291)
Q Consensus 133 ~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~ 182 (291)
. .....+....+.+.|...++...... .. ...+.++|..
T Consensus 73 ---d--~~n~~~~~~~r~~~~~~~ii~~~~~~--~~----~~~l~~~g~d 111 (116)
T PF02254_consen 73 ---D--EENLLIALLARELNPDIRIIARVNDP--EN----AELLRQAGAD 111 (116)
T ss_dssp ---H--HHHHHHHHHHHHHTTTSEEEEEESSH--HH----HHHHHHTT-S
T ss_pred ---H--HHHHHHHHHHHHHCCCCeEEEEECCH--HH----HHHHHHCCcC
Confidence 1 12334445667778889999887422 22 3345566664
No 324
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.89 E-value=0.57 Score=44.49 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=52.0
Q ss_pred HHHhcCCcceEEEccCCCCCC-CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 88 IALEREVEGDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 88 ~a~~~~~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
..+.+...+.++.+++.+.+. .+++++|.++......|+.+ ..+...++.+.+.++|||++++....
T Consensus 269 ~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~---------~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 269 ALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDP---------EQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred HHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCH---------HHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 334444457888888765443 45899999999999999854 44889999999999999999996544
No 325
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.87 E-value=0.44 Score=37.93 Aligned_cols=89 Identities=19% Similarity=0.116 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccc
Q 043626 52 PRLLLDIGCGSGL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNAD 130 (291)
Q Consensus 52 ~~~VLDiGcGsG~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~ 130 (291)
..+|+|||-|.=. .+..|.+.|..|+++|+.+. .+. ..+.++.-|+.+.-.---...|+|.|+....-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~---~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~E----- 82 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP---EGVNFVVDDIFNPNLEIYEGADLIYSIRPPPE----- 82 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------STTEE---SSS--HHHHTTEEEEEEES--TT-----
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc---cCcceeeecccCCCHHHhcCCcEEEEeCCChH-----
Confidence 4499999999855 67778888999999999987 111 34688888885421111236789998744332
Q ss_pred ccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 131 KASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 131 ~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
+...+-.+++.+ |.-+++...
T Consensus 83 ---------l~~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 83 ---------LQPPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp ---------SHHHHHHHHHHH--T-EEEEE-B
T ss_pred ---------HhHHHHHHHHHh--CCCEEEECC
Confidence 445555555543 566666543
No 326
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.80 E-value=1.3 Score=34.38 Aligned_cols=83 Identities=22% Similarity=0.186 Sum_probs=55.1
Q ss_pred CCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-C-CCCCcccEEEECCchhhhccccccCC
Q 043626 61 GSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-G-LRPGVVDGAISISAVQWLCNADKASH 134 (291)
Q Consensus 61 GsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~-~~~~~fD~Vis~~~l~~l~~~~~~~~ 134 (291)
|.|..+..+++. |..++++|.++.-++.+++.... .++..+-.+ .+ . .....+|+||-...-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~----------- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD-HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS----------- 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES-EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc-ccccccccccccccccccccccceEEEEecCc-----------
Confidence 357777777765 79999999999999999876522 222222111 00 1 123479999854221
Q ss_pred chHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 135 EPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 135 ~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
...+.....+|+++|++++.-
T Consensus 69 ------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 ------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp ------HHHHHHHHHHEEEEEEEEEES
T ss_pred ------HHHHHHHHHHhccCCEEEEEE
Confidence 256778899999999999853
No 327
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.80 E-value=1.1 Score=42.34 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=33.4
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHh
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALE 91 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~ 91 (291)
-..|+|+|.|.|.++..|+=. |+.|++||-|....+.|+.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 458999999999999999865 6999999999776665543
No 328
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=89.79 E-value=1.1 Score=38.38 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCeEEEEcCCCchhHHHHHH----cC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----C-CCCCcccEEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSE----NG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----G-LRPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~----~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~-~~~~~fD~Vis 119 (291)
+..|+++|.--|.+....+. .| ..|+++||+-.-++-+....+.+.|+.++-.... . ...+.--+.++
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfvi 149 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFVI 149 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEE
Confidence 67999999999988877765 36 7999999998887777766778889888753310 0 11111122333
Q ss_pred CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
..+-|+. ....+-++.+..+|.-|-++++.
T Consensus 150 lDsdHs~-----------~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 150 LDSDHSM-----------EHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred ecCCchH-----------HHHHHHHHHhhhHhhcCceEEEe
Confidence 3333332 22556777788888889888874
No 329
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=89.78 E-value=2.1 Score=39.35 Aligned_cols=108 Identities=18% Similarity=0.078 Sum_probs=68.7
Q ss_pred CeEEEEcCCCchhHHHHHHcC----------------------CeEEEEeCCH--HHHHHHHh---cC------------
Q 043626 53 RLLLDIGCGSGLSGETLSENG----------------------HQWIGLDISQ--SMLNIALE---RE------------ 93 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~g----------------------~~v~gvDis~--~ml~~a~~---~~------------ 93 (291)
.+||-||-|.|.-...|+... ..|+.|||.+ ..++.... ..
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987554444211 3899999876 23332222 11
Q ss_pred -------CcceEEEccCCCCCC------CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 94 -------VEGDLLLGDMGQGLG------LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 94 -------~~~~~~~~D~~~~~~------~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
-.+.|.+.|+..... +.+.+.++|...+++.-|-.. . ...-.+||..+...++||..+++.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~-----s-~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST-----S-ISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc-----C-hHHHHHHHHHHHhhcCCCcEEEEE
Confidence 015777888744211 112357888877777766431 1 222568999999999999999997
Q ss_pred EcCCCh
Q 043626 161 IYPESV 166 (291)
Q Consensus 161 ~~~~~~ 166 (291)
..|...
T Consensus 242 DSpGSY 247 (315)
T PF11312_consen 242 DSPGSY 247 (315)
T ss_pred cCCCCc
Confidence 666543
No 330
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.75 E-value=1.6 Score=40.81 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=54.4
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc---CCCCC-CCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD---MGQGL-GLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D---~~~~~-~~~~~~fD~Vis~~~l~ 124 (291)
+.+||=+|+|. |..+..+++. |. .|+++|.++.-++.+++.... .++... ..+.+ ....+.+|+|+-...-
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~- 269 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT-ATVNAGDPNAVEQVRELTGGGVDYAFEMAGS- 269 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc-eEeCCCchhHHHHHHHHhCCCCCEEEECCCC-
Confidence 56788888764 4444545544 66 699999999999988764332 122111 00000 1112368988853211
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+....++|+++|++++.
T Consensus 270 ----------------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 270 ----------------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred ----------------hHHHHHHHHHHhcCCEEEEE
Confidence 13466678899999998864
No 331
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.43 E-value=2 Score=39.39 Aligned_cols=99 Identities=23% Similarity=0.240 Sum_probs=56.7
Q ss_pred HHHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCC--CCC-CC-CCCc
Q 043626 41 LELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMG--QGL-GL-RPGV 113 (291)
Q Consensus 41 lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~--~~~-~~-~~~~ 113 (291)
++.+.+.+ +.+||=+|+|. |..+..+++. |.. +++++.++..++.+++.... .++...-. ..+ .. ....
T Consensus 156 l~~~~~~~---g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~-~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 156 LRRVGVSG---RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD-FVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HHhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-EEEcCCcchHHHHHHHhCCCC
Confidence 34444444 66888888753 3344444443 666 99999999988888664321 12211100 000 11 1236
Q ss_pred ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+|+|+-...- ...+....++|+++|++++.
T Consensus 232 ~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 232 ADVAIECSGN-----------------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 8998853211 13455677889999998863
No 332
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.20 E-value=2.5 Score=38.48 Aligned_cols=83 Identities=20% Similarity=0.147 Sum_probs=52.8
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~ 128 (291)
+.+||=+|||. |.++..+++. |. .++++|.++..++.|.... ++ |..+. ....+|+|+-...-
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----~i--~~~~~---~~~g~Dvvid~~G~----- 210 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----VL--DPEKD---PRRDYRAIYDASGD----- 210 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----cc--Chhhc---cCCCCCEEEECCCC-----
Confidence 45788888875 6666666654 64 5778899988887775421 11 21111 13468988854221
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|++++.
T Consensus 211 ------------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 ------------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred ------------HHHHHHHHHhhhcCcEEEEE
Confidence 13566788899999999964
No 333
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.16 E-value=12 Score=35.87 Aligned_cols=102 Identities=13% Similarity=0.002 Sum_probs=59.0
Q ss_pred CCeEEEEcCCC-chhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGS-GLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+.+|+=+|||. |.....++ ..|..|+++|.++.-...+.... ..+ .++.+.+ ...|+||+...-
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G--~~v--~~leeal----~~aDVVItaTG~------ 260 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG--FRV--MTMEEAA----KIGDIFITATGN------ 260 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC--CEe--CCHHHHH----hcCCEEEECCCC------
Confidence 67999999987 44333333 34789999999886544443321 111 1221111 346888864211
Q ss_pred cccCCchHHHHHHHHH-HHHHhccCCcEEEEEEcCCChHHHHHHHHHHHH
Q 043626 130 DKASHEPRLRLKAFFG-SLYRCLARGARAVFQIYPESVAQRELILGAAMR 178 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~-~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~ 178 (291)
..++. .....+++|++++..-.....-....+.+.+..
T Consensus 261 -----------~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 261 -----------KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred -----------HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 23343 477889999988876544333445555555444
No 334
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.03 E-value=1.5 Score=43.15 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=59.5
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCC----------------------C
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQG----------------------L 107 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~----------------------~ 107 (291)
+.+||=+|||. |.....++. .|..++++|.++..++.++.. ..+++..|..+. +
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l--Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM--GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 67999999987 555554444 478899999999988888763 233433332110 0
Q ss_pred CCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626 108 GLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAV 158 (291)
Q Consensus 108 ~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv 158 (291)
+-.-..+|+||....+.--+. ..-+.++..+.+|||+.++
T Consensus 242 ~e~~~~~DIVI~TalipG~~a-----------P~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPA-----------PKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHhCCCCEEEECcccCCCCC-----------CeeehHHHHhhCCCCCEEE
Confidence 111246899986543322111 1235667788999999877
No 335
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=88.87 E-value=6.5 Score=35.83 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=55.1
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCC--CCCCCCCCcccEEEECCchhhh
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NGH-QWIGLDISQSMLNIALEREVEGDLLLGDMG--QGLGLRPGVVDGAISISAVQWL 126 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~--~~~~~~~~~fD~Vis~~~l~~l 126 (291)
+..||-.|||. |..+..++. .|. .+++++.++...+.+.+.... .++...-. ..+....+.+|+|+.....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~~~~vd~vld~~g~--- 241 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD-ETVNLARDPLAAYAADKGDFDVVFEASGA--- 241 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC-EEEcCCchhhhhhhccCCCccEEEECCCC---
Confidence 67888888764 445444554 476 799999999988876654321 22221100 0111112358998864221
Q ss_pred ccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|+++..
T Consensus 242 --------------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 242 --------------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred --------------HHHHHHHHHHHhcCCEEEEE
Confidence 13466788999999998863
No 336
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.46 E-value=7.3 Score=35.30 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=54.2
Q ss_pred CCeEEEEcCC-CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-CCCCcccEEEECCchhhhcc
Q 043626 52 PRLLLDIGCG-SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 52 ~~~VLDiGcG-sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~ 128 (291)
+..||-+||| .|..+..++.. |..+++++.++..++.+.+.. .+.+..+...... ...+.+|+++....-
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~d~vi~~~~~----- 235 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG--ADEVVDSGAELDEQAAAGGADVILVTVVS----- 235 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC--CcEEeccCCcchHHhccCCCCEEEECCCc-----
Confidence 5688888886 34444444444 789999999999888875432 2222111101000 012468988854211
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|.++..
T Consensus 236 ------------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 236 ------------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred ------------HHHHHHHHHhcccCCEEEEE
Confidence 13456778899999988864
No 337
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.43 E-value=4.7 Score=38.73 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=61.0
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCC-chhHHHHH-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcc
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGS-GLSGETLS-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV 114 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGs-G~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~f 114 (291)
.+.++...++.-. +.+|+=+|||. |.....++ ..|..|+.+|+++.-+..|..... ..+ ++.+.+ ..+
T Consensus 189 ~~~i~r~t~~~l~--GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~--~~~--~~~e~v----~~a 258 (413)
T cd00401 189 IDGIKRATDVMIA--GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY--EVM--TMEEAV----KEG 258 (413)
T ss_pred HHHHHHhcCCCCC--CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC--EEc--cHHHHH----cCC
Confidence 3555665555332 67999999997 55444444 447899999999988887765432 221 111111 347
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHH-HHHhccCCcEEEEEE
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGS-LYRCLARGARAVFQI 161 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~-l~~~LkpgG~lv~~~ 161 (291)
|+||....- ..++.. ...++++||+++..-
T Consensus 259 DVVI~atG~-----------------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGN-----------------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCC-----------------HHHHHHHHHhcCCCCcEEEEeC
Confidence 999864221 133443 588999999887654
No 338
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=87.98 E-value=4.3 Score=37.86 Aligned_cols=91 Identities=14% Similarity=0.130 Sum_probs=49.2
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHH-HHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLN-IALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~-~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~ 128 (291)
+.+||-+|||. |..+..+++. |..+++++.+..... .+++.... .++...-...+....+.+|+|+-...-
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~-~vi~~~~~~~~~~~~~~~D~vid~~g~----- 257 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGAD-SFLVSTDPEKMKAAIGTMDYIIDTVSA----- 257 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCc-EEEcCCCHHHHHhhcCCCCEEEECCCC-----
Confidence 56788788864 5555555544 778888888765443 33332211 122110000010001247888853211
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+....++|++||++++.
T Consensus 258 ------------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 258 ------------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred ------------HHHHHHHHHHhcCCcEEEEe
Confidence 13566788899999998864
No 339
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.53 E-value=8.7 Score=35.59 Aligned_cols=91 Identities=16% Similarity=0.131 Sum_probs=54.1
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-C-CCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-G-LRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~-~~~~~fD~Vis~~~l 123 (291)
+.+||=+|||. |..+..+++. |. .++++|.++..++.+++.... .++...-.+ .+ . .....+|+|+-...-
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT-HTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-eEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 67888888754 4444445544 65 599999999999988764332 222111000 00 0 112358988853211
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+.....+|++||++++.
T Consensus 256 -----------------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 256 -----------------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred -----------------HHHHHHHHHHhccCCEEEEE
Confidence 13455677899999998864
No 340
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=87.14 E-value=2.1 Score=38.55 Aligned_cols=58 Identities=29% Similarity=0.465 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc
Q 043626 34 AKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVE 95 (291)
Q Consensus 34 ~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~ 95 (291)
..+.++++..... . +..|||--+|+|..+.+....|..++|+|+++..++.+.++...
T Consensus 209 ~~l~~r~i~~~s~-~---~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 209 LALIERLIRDYSF-P---GDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHHHHhcCC-C---CCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence 3566777776332 2 67999999999999999999999999999999999999988654
No 341
>PLN02740 Alcohol dehydrogenase-like
Probab=87.04 E-value=5.1 Score=37.63 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=54.2
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-----CCCCC-CCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-----MGQGL-GLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-----~~~~~-~~~~~~fD~Vis~~~ 122 (291)
+.+||=+|||+ |..+..+++. |. .|+++|.++..++.+++.... .++... ..+.+ .+..+.+|+|+-...
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G 277 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT-DFINPKDSDKPVHERIREMTGGGVDYSFECAG 277 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc-EEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 67899898764 4444445544 65 699999999999988764332 222211 10000 111236898885422
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ 160 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~ 160 (291)
- ...+.....++++| |++++.
T Consensus 278 ~-----------------~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 278 N-----------------VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred C-----------------hHHHHHHHHhhhcCCCEEEEE
Confidence 1 13566677788886 887753
No 342
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.94 E-value=6.2 Score=37.59 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=31.1
Q ss_pred eEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcC
Q 043626 54 LLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALERE 93 (291)
Q Consensus 54 ~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~ 93 (291)
+|--+|+|. |+ .+..|++.||+|+|+|+++.-++..+...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~ 43 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGI 43 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCC
Confidence 455677775 55 45677788999999999999998887654
No 343
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.72 E-value=12 Score=34.58 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=31.5
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcC
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALERE 93 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~ 93 (291)
+.+||=+|||+ |.....++.. |..++++|.++..++.+++..
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~G 210 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFG 210 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC
Confidence 67999999854 5554555544 678999999999998886643
No 344
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.17 E-value=12 Score=34.71 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=55.7
Q ss_pred CCeEEEEcCC--CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEc----cCCCCC-CCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCG--SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLG----DMGQGL-GLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcG--sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~----D~~~~~-~~~~~~fD~Vis~~~l 123 (291)
+.+||=.|++ .|..+..+++. |..+++++.++..++.++....--.++.. +..+.+ ....+.+|+|+-...
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG- 237 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG- 237 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC-
Confidence 6789999983 46666666655 78899999999888877632221122221 110000 111245888885311
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|++||++++.
T Consensus 238 -----------------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 238 -----------------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred -----------------HHHHHHHHHHhccCCEEEEE
Confidence 13466788999999998863
No 345
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=85.97 E-value=0.21 Score=39.78 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=45.5
Q ss_pred ceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHH
Q 043626 96 GDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGA 175 (291)
Q Consensus 96 ~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~ 175 (291)
.++..+|+.+.++--...||+|+.... ....+|..=-..+|+.+++++++||.+. +|... ..+...
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgF--------sP~~nPelWs~e~~~~l~~~~~~~~~l~--Tys~a----~~Vr~~ 98 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGF--------SPAKNPELWSEELFKKLARLSKPGGTLA--TYSSA----GAVRRA 98 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS---------TTTSGGGSSHHHHHHHHHHEEEEEEEE--ES--B----HHHHHH
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCC--------CCcCCcccCCHHHHHHHHHHhCCCcEEE--Eeech----HHHHHH
Confidence 355666664433322367888885421 1112232222689999999999998665 44332 357778
Q ss_pred HHHcCCCCcEEEeCC
Q 043626 176 AMRAGFAGGVVVDYP 190 (291)
Q Consensus 176 ~~~aGF~~~~~~~~p 190 (291)
+..+||.......++
T Consensus 99 L~~aGF~v~~~~g~g 113 (124)
T PF05430_consen 99 LQQAGFEVEKVPGFG 113 (124)
T ss_dssp HHHCTEEEEEEE-ST
T ss_pred HHHcCCEEEEcCCCC
Confidence 999999864444443
No 346
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.95 E-value=5.1 Score=36.53 Aligned_cols=117 Identities=19% Similarity=0.167 Sum_probs=67.4
Q ss_pred eEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 54 LLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 54 ~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+|-=||+|. +.+...|++.|+.|++.|.++..++.+.+..... ..+..+ +.......|+|++.-.-
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~---~~s~~~-~~~~~~~~dvIi~~vp~-------- 69 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTG---VANLRE-LSQRLSAPRVVWVMVPH-------- 69 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcc---cCCHHH-HHhhcCCCCEEEEEcCc--------
Confidence 456678876 2355666677899999999998887776532111 111100 00001245888764111
Q ss_pred cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626 132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS 192 (291)
Q Consensus 132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~ 192 (291)
.....++..+...|++|- +++......+.....+...+...|. ..++-|-+
T Consensus 70 ------~~~~~v~~~l~~~l~~g~-ivid~st~~~~~t~~~~~~~~~~g~---~~vda~vs 120 (298)
T TIGR00872 70 ------GIVDAVLEELAPTLEKGD-IVIDGGNSYYKDSLRRYKLLKEKGI---HLLDCGTS 120 (298)
T ss_pred ------hHHHHHHHHHHhhCCCCC-EEEECCCCCcccHHHHHHHHHhcCC---eEEecCCC
Confidence 126677888888888874 5555444344455555666666664 35565544
No 347
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=85.86 E-value=11 Score=33.07 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=53.5
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~ 128 (291)
+..||-.|||. |..+..++.. |.. +++++.++..++.+.+....-.++... .. ......+|+|+....-
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~--~~-~~~~~~~d~vl~~~~~----- 169 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADT--AD-EIGGRGADVVIEASGS----- 169 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccc--hh-hhcCCCCCEEEEccCC-----
Confidence 56788888764 4454545544 666 999999999888777653110111110 00 0123468988853111
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+....++|+++|.++..
T Consensus 170 ------------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 170 ------------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred ------------hHHHHHHHHHhcCCcEEEEE
Confidence 13456778899999998864
No 348
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.77 E-value=7.5 Score=35.00 Aligned_cols=87 Identities=24% Similarity=0.155 Sum_probs=53.8
Q ss_pred eEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 54 LLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 54 ~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+|.=||+|. |.++..|.+.|++|+++|.++..++.+..... +.....+. . .....|+||..-..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~-~~~~~~~~----~-~~~~aDlVilavp~-------- 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL-VDEASTDL----S-LLKDCDLVILALPI-------- 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-cccccCCH----h-HhcCCCEEEEcCCH--------
Confidence 466678875 44666777788999999999998888765421 11111111 1 12457888865322
Q ss_pred cCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 132 ASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.....++..+...++++. ++..+
T Consensus 68 ------~~~~~~~~~l~~~l~~~~-ii~d~ 90 (279)
T PRK07417 68 ------GLLLPPSEQLIPALPPEA-IVTDV 90 (279)
T ss_pred ------HHHHHHHHHHHHhCCCCc-EEEeC
Confidence 224567788888887764 44444
No 349
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=85.74 E-value=1.3 Score=47.51 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=61.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+..+||+|+|+-.=...+......|+.||+-|...-.+- -...-+++..|....--.....+|.+.|+.+|..-|-+.
T Consensus 823 ~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~-w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~a- 900 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNC-WNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAASA- 900 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCC-CSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHHC-
T ss_pred cceEEEccCCccceeeeccCCCCceEEEecCCcccccch-hhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhcC-
Confidence 579999999987766666677789999999774311100 012357899997553334467899999999998765422
Q ss_pred cCCchHHHHHHHHHHHHHhccCCc--EEEEE
Q 043626 132 ASHEPRLRLKAFFGSLYRCLARGA--RAVFQ 160 (291)
Q Consensus 132 ~~~~p~~~l~~~l~~l~~~LkpgG--~lv~~ 160 (291)
...+...++.+.+.+++.| ++++|
T Consensus 901 -----~~tl~~~l~~~l~~~~~~~~~~l~lQ 926 (1289)
T PF06016_consen 901 -----NVTLDAGLQQFLSQCVQANVKRLWLQ 926 (1289)
T ss_dssp -----T--HHHHHHHHHHHHHCTT-SEEEEE
T ss_pred -----CCcHHHHHHHHHHHHHhCCccEEEEE
Confidence 1227788888888888877 45554
No 350
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.37 E-value=3.5 Score=36.14 Aligned_cols=67 Identities=22% Similarity=0.343 Sum_probs=48.1
Q ss_pred eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEEC
Q 043626 54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISI 120 (291)
Q Consensus 54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~ 120 (291)
.++=+|||. | .++..|.+.|+.|+.+|.++..++...........+++|..+.- ...-..+|.+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 577788886 3 36677778899999999999988775554455678888875421 1224678988864
No 351
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.16 E-value=11 Score=34.26 Aligned_cols=120 Identities=18% Similarity=0.085 Sum_probs=68.9
Q ss_pred eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+|-=||+|. | .....|++.|+.+++.|.++...+.+.+.. +. ...+..+ +.-.....|+|++.-.-.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g--~~-~~~~~~e-~~~~~~~~dvvi~~v~~~------- 70 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG--AT-GADSLEE-LVAKLPAPRVVWLMVPAG------- 70 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC--Ce-ecCCHHH-HHhhcCCCCEEEEEecCC-------
Confidence 455677775 2 255666777899999999998877665432 11 1112111 000001247777531111
Q ss_pred cCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626 132 ASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK 194 (291)
Q Consensus 132 ~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~ 194 (291)
.....++..+...|++|. +++......+.....+...+...|. .++|-|.+..
T Consensus 71 ------~~~~~v~~~l~~~l~~g~-ivid~st~~~~~~~~~~~~~~~~g~---~~~dapvsG~ 123 (301)
T PRK09599 71 ------EITDATIDELAPLLSPGD-IVIDGGNSYYKDDIRRAELLAEKGI---HFVDVGTSGG 123 (301)
T ss_pred ------cHHHHHHHHHHhhCCCCC-EEEeCCCCChhHHHHHHHHHHHcCC---EEEeCCCCcC
Confidence 114566677778888764 5555545555566667777777764 4567776643
No 352
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=85.07 E-value=4.1 Score=38.58 Aligned_cols=119 Identities=22% Similarity=0.272 Sum_probs=68.3
Q ss_pred HHHHHHHHhCCCCCCCCCeEEEEcCCCch----hHHHHHHc--C---CeEEEEeC----CHHHHHHHHhcCCc------c
Q 043626 36 LSERALELLALPDDGVPRLLLDIGCGSGL----SGETLSEN--G---HQWIGLDI----SQSMLNIALEREVE------G 96 (291)
Q Consensus 36 ~~~~~lelL~~~~~~~~~~VLDiGcGsG~----~~~~L~~~--g---~~v~gvDi----s~~ml~~a~~~~~~------~ 96 (291)
.-+.+++.+.-.. .-+|+|+|.|.|. +...|+.+ | ..++||+. +..-++.+.++..+ +
T Consensus 98 aNqaIleA~~g~~---~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv 174 (374)
T PF03514_consen 98 ANQAILEAFEGER---RVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV 174 (374)
T ss_pred hhHHHHHHhccCc---ceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc
Confidence 3445666665544 6799999999996 44455554 2 58999999 77777666655432 2
Q ss_pred --eEEE---ccCCC----CCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 97 --DLLL---GDMGQ----GLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 97 --~~~~---~D~~~----~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
+|.. .++.. .+...++..=+|-|.+.+||+.+......+|. ..+|. ..+.|+|.-.+++.-
T Consensus 175 ~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~---~~~L~-~ir~L~P~vvv~~E~ 244 (374)
T PF03514_consen 175 PFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPR---DAFLR-VIRSLNPKVVVLVEQ 244 (374)
T ss_pred cEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchH---HHHHH-HHHhcCCCEEEEEee
Confidence 2222 22211 11223344334445666789876544444443 34554 445779996666643
No 353
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=84.99 E-value=9.2 Score=34.56 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=66.3
Q ss_pred hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHHH
Q 043626 65 SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFF 144 (291)
Q Consensus 65 ~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l 144 (291)
+...|.+.|+.+++.|.++..++...+... ....+..+ .....|+||+.-.. ...+..++
T Consensus 11 mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~---~~~~s~~~----~~~~advVil~vp~-------------~~~~~~v~ 70 (288)
T TIGR01692 11 MAANLLKAGHPVRVFDLFPDAVEEAVAAGA---QAAASPAE----AAEGADRVITMLPA-------------GQHVISVY 70 (288)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHHHHHHcCC---eecCCHHH----HHhcCCEEEEeCCC-------------hHHHHHHH
Confidence 445555668999999999988776654321 11112111 12345877754111 01134444
Q ss_pred ---HHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC---CCcEEEEEeeCC
Q 043626 145 ---GSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK---SRKEFLVLTCGP 206 (291)
Q Consensus 145 ---~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~---~~~~~l~l~~g~ 206 (291)
..+...+++| .+++.+....+.....+.+.+.+.|. .+++-|-+.. +..-.+.++.|.
T Consensus 71 ~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~---~~vdaPv~Gg~~~a~~g~l~~~~gg 134 (288)
T TIGR01692 71 SGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGA---VFMDAPVSGGVGGARAGTLTFMVGG 134 (288)
T ss_pred cCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCC---cEEECCCCCCHHHHhhCcEEEEECC
Confidence 4566666665 45555555666777778888877764 4567666543 223345555554
No 354
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=84.91 E-value=9.9 Score=35.33 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=49.9
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+.+||-+|+|. |..+..+++. |..+++++.++.....+.+...--.++...-...+......+|+|+-...-
T Consensus 181 g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~------ 254 (357)
T PLN02514 181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPV------ 254 (357)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCc------
Confidence 56788777653 4444445544 677888888887665554433211122111000010011247887743110
Q ss_pred cccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|+++..
T Consensus 255 -----------~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 255 -----------FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred -----------hHHHHHHHHHhccCCEEEEE
Confidence 13556677899999998863
No 355
>PRK08267 short chain dehydrogenase; Provisional
Probab=84.69 E-value=9.6 Score=33.28 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=46.9
Q ss_pred eEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC--CcceEEEccCCCCCC----CC------CCcccEEE
Q 043626 54 LLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE--VEGDLLLGDMGQGLG----LR------PGVVDGAI 118 (291)
Q Consensus 54 ~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~--~~~~~~~~D~~~~~~----~~------~~~fD~Vi 118 (291)
+||-.|++.|. ++..|++.|..|+.++.++..++...... ..+.++.+|+.+.-. +. .+.+|+||
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi 82 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLF 82 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEE
Confidence 57888876543 44555667899999999988776665443 246788889865211 00 35789999
Q ss_pred ECCch
Q 043626 119 SISAV 123 (291)
Q Consensus 119 s~~~l 123 (291)
.+...
T Consensus 83 ~~ag~ 87 (260)
T PRK08267 83 NNAGI 87 (260)
T ss_pred ECCCC
Confidence 87654
No 356
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.66 E-value=11 Score=33.86 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=54.5
Q ss_pred eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcc---eEEE-ccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEG---DLLL-GDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~---~~~~-~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+|+=||||. | .++..|++.|+.|+.++-++..++...+....+ .... ........ ....+|+|+..---+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~~--- 77 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKAY--- 77 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh-HcCCCCEEEEecccc---
Confidence 578889886 2 355666777899999999777776665543211 1100 00001011 125789888542211
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.+..++..+...+.++..+++..
T Consensus 78 -----------~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 78 -----------QLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred -----------cHHHHHHHHhhhcCCCCEEEEec
Confidence 15677888888888877666543
No 357
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=84.58 E-value=4.1 Score=39.62 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCchhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcCCc--ceEEEccCCCCCC---------CCCCcccEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN-G-HQWIGLDISQSMLNIALEREVE--GDLLLGDMGQGLG---------LRPGVVDGAI 118 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~~~--~~~~~~D~~~~~~---------~~~~~fD~Vi 118 (291)
...+|-+|-|+|.+...|.-. . ..+++|++.|.|++.|...+.- -+-...-|..+++ -....||+++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 568899999999999888765 3 7899999999999999876531 0000011111221 1345788877
Q ss_pred ECCchhhhcccc-ccCCch--HHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHH
Q 043626 119 SISAVQWLCNAD-KASHEP--RLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMR 178 (291)
Q Consensus 119 s~~~l~~l~~~~-~~~~~p--~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~ 178 (291)
.- +..++ ..-..| .---..++..+...|.|.|.+++...+.+.....++...+.+
T Consensus 376 ~d-----vds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~ 433 (482)
T KOG2352|consen 376 VD-----VDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK 433 (482)
T ss_pred EE-----CCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence 42 01111 001112 222367888999999999999998877776665555554443
No 358
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.57 E-value=13 Score=34.02 Aligned_cols=96 Identities=16% Similarity=0.043 Sum_probs=58.2
Q ss_pred CCeEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcC-Cc----ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALERE-VE----GDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~----~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
.++|+=||||. |.++..|++.|+.|+.++-+...++..++.. .. ............+...+.||+||..-=-+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 35799999996 4577888888999999999876665554321 11 11011011001111235789888531111
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
+ +...+..+...+.++..+++--
T Consensus 82 ~--------------~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 82 D--------------AEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred h--------------HHHHHHHHHhhCCCCCEEEEEe
Confidence 1 4577888999999998776543
No 359
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.84 E-value=9.7 Score=32.61 Aligned_cols=109 Identities=14% Similarity=0.035 Sum_probs=59.3
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCC---------CCCcccE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGL---------RPGVVDG 116 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~---------~~~~fD~ 116 (291)
+.+||-.|++.|. +...+++.|..|++++-++.-+..+.... ..+.++.+|+.+.-.. ..+.+|.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 84 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG 84 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4589999986543 33444566899999999887665442221 2357778887542100 1245688
Q ss_pred EEECCchhhhcccccc------CCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 117 AISISAVQWLCNADKA------SHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 117 Vis~~~l~~l~~~~~~------~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
++.+............ ..........+++.+...++++|.+++.
T Consensus 85 ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 85 LVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred EEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 8876543221100000 0000011223466666777888887764
No 360
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=83.41 E-value=17 Score=32.71 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCchhHHHHH----HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGSGLSGETLS----ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~----~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+.+||=.|+ |.++..+. ..|..+++++.++...+.+++... .... +.... .....+|+|+....-
T Consensus 156 g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~--~~~~-~~~~~--~~~~~~d~vid~~g~---- 224 (319)
T cd08242 156 GDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGV--ETVL-PDEAE--SEGGGFDVVVEATGS---- 224 (319)
T ss_pred CCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC--cEEe-Ccccc--ccCCCCCEEEECCCC----
Confidence 568888875 45555543 347789999999999988876322 1111 11111 223568998854110
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
...+..+.++|+++|.+++
T Consensus 225 -------------~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 225 -------------PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred -------------hHHHHHHHHHhhcCCEEEE
Confidence 1345677889999999987
No 361
>PLN02827 Alcohol dehydrogenase-like
Probab=83.26 E-value=10 Score=35.70 Aligned_cols=91 Identities=21% Similarity=0.207 Sum_probs=53.0
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-----CCCCC-CCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-----MGQGL-GLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-----~~~~~-~~~~~~fD~Vis~~~ 122 (291)
+..||-+|+|+ |.....+++. |. .++++|.++..++.+++.... .++... ....+ ....+.+|+|+-...
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 272 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT-DFINPNDLSEPIQQVIKRMTGGGADYSFECVG 272 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-EEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence 67888888754 4444444443 65 689999999988888664332 122111 00000 011235898885422
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ 160 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~ 160 (291)
- ...+....++|++| |++++.
T Consensus 273 ~-----------------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 273 D-----------------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred C-----------------hHHHHHHHHhhccCCCEEEEE
Confidence 1 13456678888998 999863
No 362
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.01 E-value=15 Score=33.16 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=53.4
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCCCC----CCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQGL----GLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~----~~~~~~fD~Vis~~~l~ 124 (291)
+..||-+|+|. |.....++.. |.. +++++.++...+.+.+.... .++..+- ... ......+|+|+....-
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~~vd~v~~~~~~- 236 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT-ETVDPSR-EDPEAQKEDNPYGFDVVIEATGV- 236 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe-EEecCCC-CCHHHHHHhcCCCCcEEEECCCC-
Confidence 67888888642 3343334443 655 89999999988887654322 2222111 110 1123568999864211
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|+++..
T Consensus 237 ----------------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 237 ----------------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred ----------------hHHHHHHHHHHhcCCEEEEE
Confidence 14566778999999998754
No 363
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=82.82 E-value=13 Score=34.60 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=53.8
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEE-cc----CCCCC-CCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLL-GD----MGQGL-GLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~-~D----~~~~~-~~~~~~fD~Vis~~~ 122 (291)
+..||=+|||. |..+..+++. |. .|+++|.++..++.+.+.... .++. .+ +...+ ....+.+|+|+-...
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 264 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT-DCVNPNDYDKPIQEVIVEITDGGVDYSFECIG 264 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC-eEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 67888888864 4455555554 65 799999999999988765432 1121 10 00000 011235888885321
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ 160 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~ 160 (291)
- ...+....++|++| |++++.
T Consensus 265 ~-----------------~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 265 N-----------------VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred C-----------------HHHHHHHHHHhhcCCCeEEEE
Confidence 1 13466677889886 988754
No 364
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.57 E-value=7.9 Score=36.93 Aligned_cols=110 Identities=23% Similarity=0.287 Sum_probs=62.6
Q ss_pred CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC--------C-C-----CCCCCccc
Q 043626 52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ--------G-L-----GLRPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~--------~-~-----~~~~~~fD 115 (291)
..+|-=||-|- |+ ++..++.+|..|+|+||++..++....-... ...-+... + + +......|
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~--i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~d 86 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESY--IEEPDLDEVVKEAVESGKLRATTDPEELKECD 86 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcce--eecCcHHHHHHHHHhcCCceEecChhhcccCC
Confidence 35677777664 54 4455567799999999999988876543221 11111100 0 0 11111445
Q ss_pred EEE-ECCchhhhccccccCCchHHH-HHHHHHHHHHhccCCcEEEEE--EcCCChHHH
Q 043626 116 GAI-SISAVQWLCNADKASHEPRLR-LKAFFGSLYRCLARGARAVFQ--IYPESVAQR 169 (291)
Q Consensus 116 ~Vi-s~~~l~~l~~~~~~~~~p~~~-l~~~l~~l~~~LkpgG~lv~~--~~~~~~~~~ 169 (291)
++| |..+ +-....+|... +....+.+..+|++|-.+++. +||...+++
T Consensus 87 v~iI~VPT------Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v 138 (436)
T COG0677 87 VFIICVPT------PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEV 138 (436)
T ss_pred EEEEEecC------CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHH
Confidence 444 3222 11222344433 477888999999999999984 666654443
No 365
>PRK08265 short chain dehydrogenase; Provisional
Probab=82.49 E-value=8.3 Score=33.91 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=45.6
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc-CCcceEEEccCCCCCCC---------CCCcccEEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER-EVEGDLLLGDMGQGLGL---------RPGVVDGAI 118 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~-~~~~~~~~~D~~~~~~~---------~~~~fD~Vi 118 (291)
+..+|=.|+++|. +...|++.|..|+.+|.++..++..... ...+.++.+|+.+.-.. ..+..|++|
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv 85 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILV 85 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 4578888865543 3445556789999999988755444333 23467788888652110 124689999
Q ss_pred ECCch
Q 043626 119 SISAV 123 (291)
Q Consensus 119 s~~~l 123 (291)
.+...
T Consensus 86 ~~ag~ 90 (261)
T PRK08265 86 NLACT 90 (261)
T ss_pred ECCCC
Confidence 87543
No 366
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.48 E-value=9.2 Score=36.65 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=47.7
Q ss_pred CCeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~ 120 (291)
..+|+=+|||. |. ....|.+.|+.++.+|.++..++.+.+......++.+|..+.- ......+|.|++.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 46888888854 21 3334445589999999999998888776666778888875432 1234578888764
No 367
>PRK12829 short chain dehydrogenase; Provisional
Probab=82.33 E-value=4.9 Score=35.08 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=45.4
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--cceEEEccCCCCCC----C-----CCCcccEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREV--EGDLLLGDMGQGLG----L-----RPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~--~~~~~~~D~~~~~~----~-----~~~~fD~V 117 (291)
+.+||-.|++.|. +...|++.|+.|++++-++..++....... .+.++.+|+.+.-. + ..+.+|+|
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 90 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVL 90 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 5689988876443 233445668999999998877665444333 24677788754211 0 01468999
Q ss_pred EECCch
Q 043626 118 ISISAV 123 (291)
Q Consensus 118 is~~~l 123 (291)
|.+...
T Consensus 91 i~~ag~ 96 (264)
T PRK12829 91 VNNAGI 96 (264)
T ss_pred EECCCC
Confidence 976543
No 368
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=82.14 E-value=1.1 Score=41.10 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=61.3
Q ss_pred HhCCCCCCCCCeEEEEcCCCchhHH-HHHHcC-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCCCCCCCcc
Q 043626 43 LLALPDDGVPRLLLDIGCGSGLSGE-TLSENG-HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGLGLRPGVV 114 (291)
Q Consensus 43 lL~~~~~~~~~~VLDiGcGsG~~~~-~L~~~g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~~~~~~~f 114 (291)
.+..... +..|+|+=+|-|.++. .+...| ..|+++|++|..++..+.+... +.++.+|- . .+-+....
T Consensus 188 v~~~sc~--~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~-R-~~~~~~~A 263 (351)
T KOG1227|consen 188 VLNTSCD--GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN-R-NPKPRLRA 263 (351)
T ss_pred hhhcccc--cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc-c-ccCccccc
Confidence 3444443 5689999999999998 666777 7999999999999887765432 23444443 2 23335677
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcE
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGAR 156 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~ 156 (291)
|-|.. .-|+.+. .-...+.++|+|.|-
T Consensus 264 drVnL----GLlPSse-----------~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 264 DRVNL----GLLPSSE-----------QGWPTAIKALKPEGG 290 (351)
T ss_pred hheee----ccccccc-----------cchHHHHHHhhhcCC
Confidence 77773 3344422 223346677787543
No 369
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.94 E-value=12 Score=33.78 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=29.8
Q ss_pred eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626 54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALER 92 (291)
Q Consensus 54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~ 92 (291)
+|.=||+|. | .++..|+..|+.|+.+|.++..++.+.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQE 43 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence 577788875 2 35566667799999999999998887643
No 370
>PRK09072 short chain dehydrogenase; Provisional
Probab=81.76 E-value=14 Score=32.35 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCcceEEEccCCCCCCC--------CCCcccEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER---EVEGDLLLGDMGQGLGL--------RPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~---~~~~~~~~~D~~~~~~~--------~~~~fD~V 117 (291)
+..||=.|+++|. +...|+++|+.|++++.++..++..... ...+.++..|+.+.-.. ..+..|++
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~l 84 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVL 84 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEE
Confidence 4578888877654 4455667799999999988766555432 22466788888542110 02568999
Q ss_pred EECCchh
Q 043626 118 ISISAVQ 124 (291)
Q Consensus 118 is~~~l~ 124 (291)
|.+....
T Consensus 85 v~~ag~~ 91 (263)
T PRK09072 85 INNAGVN 91 (263)
T ss_pred EECCCCC
Confidence 9876543
No 371
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.68 E-value=27 Score=31.94 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=56.2
Q ss_pred HHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCCC------C--CCC
Q 043626 42 ELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQG------L--GLR 110 (291)
Q Consensus 42 elL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~------~--~~~ 110 (291)
+...+.+ +.+||-.|+|. |..+..+++. |.. +++++.++...+.+.+.... .++..+-... + ...
T Consensus 156 ~~~~~~~---g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 156 RRAGVRP---GDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGAT-HTVNVRTEDTPESAEKIAELLG 231 (343)
T ss_pred HhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCc-EEeccccccchhHHHHHHHHhC
Confidence 4444554 56777777654 4444445544 666 89999888888777553211 2222111010 0 112
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+|+|+....- ...+....++|+++|+++..
T Consensus 232 ~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 232 GKGPDVVIECTGA-----------------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 3458999854221 12566788999999998854
No 372
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=81.46 E-value=20 Score=32.43 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=55.3
Q ss_pred CCeEEEEcC--CCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-----CCCCCcccEEEECCch
Q 043626 52 PRLLLDIGC--GSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-----GLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGc--GsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-----~~~~~~fD~Vis~~~l 123 (291)
+.+||=.|+ |.|..+..+++. |..+++++.++...+.+++.... .++..+-...+ ....+.+|+|+-...
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G- 216 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFD-VAFNYKTVKSLEETLKKASPDGYDCYFDNVG- 216 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC-EEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence 678988885 345566666654 78899999999888888654321 22221110001 111246888885311
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|+++..
T Consensus 217 -----------------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 217 -----------------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred -----------------HHHHHHHHHHhCcCcEEEEe
Confidence 12356788999999999953
No 373
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=81.35 E-value=16 Score=34.04 Aligned_cols=91 Identities=21% Similarity=0.252 Sum_probs=53.3
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEc-c----CCCCC-CCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLG-D----MGQGL-GLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~-D----~~~~~-~~~~~~fD~Vis~~~ 122 (291)
+..||=+|+|. |..+..+++. |. .++++|.++..++.+++.... .++.. + +...+ ....+.+|+|+-...
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g 265 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT-DCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG 265 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC-EEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence 67888888753 4444444443 66 799999999999888654322 12211 1 00000 011236898885311
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ 160 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~ 160 (291)
- ...+....++|+++ |++++.
T Consensus 266 ~-----------------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 266 N-----------------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred C-----------------hHHHHHHHHhhccCCCeEEEE
Confidence 0 13566678889887 888864
No 374
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.32 E-value=4.1 Score=38.72 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=36.5
Q ss_pred HHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 043626 40 ALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALE 91 (291)
Q Consensus 40 ~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~ 91 (291)
-++.|.+.+ +.+||-|..|-.+....|+..-..|++||+|+..+....-
T Consensus 27 D~~aL~i~~---~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 27 DMEALNIGP---DDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLEL 75 (380)
T ss_pred HHHHhCCCC---CCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHH
Confidence 456777776 6799999666555555555555999999999998776644
No 375
>PRK05872 short chain dehydrogenase; Provisional
Probab=81.18 E-value=16 Score=32.82 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=46.3
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCC---cceEEEccCCCCCC---------CCCCcccE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREV---EGDLLLGDMGQGLG---------LRPGVVDG 116 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~---~~~~~~~D~~~~~~---------~~~~~fD~ 116 (291)
+..||-.|+++|. +...|++.|..|+.++.++..++...+... .+..+.+|+.+.-. -..+.+|+
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 88 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGIDV 88 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4688888876654 445555678999999999887766544332 23344578754211 01257899
Q ss_pred EEECCch
Q 043626 117 AISISAV 123 (291)
Q Consensus 117 Vis~~~l 123 (291)
+|.+..+
T Consensus 89 vI~nAG~ 95 (296)
T PRK05872 89 VVANAGI 95 (296)
T ss_pred EEECCCc
Confidence 9988665
No 376
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=81.13 E-value=19 Score=30.15 Aligned_cols=75 Identities=16% Similarity=0.323 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCeEEEEeCCHHHHHHHHhcCC--------cceEEEccCCCC--------CCCCCCc
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--GHQWIGLDISQSMLNIALEREV--------EGDLLLGDMGQG--------LGLRPGV 113 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g~~v~gvDis~~ml~~a~~~~~--------~~~~~~~D~~~~--------~~~~~~~ 113 (291)
...|+.||||-=.....+... +..|+-+|. |.+++.-++... +..++..|+.+. ..|.++.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 348999999998888888874 578999998 445544433322 146888998641 1355667
Q ss_pred ccEEEECCchhhhc
Q 043626 114 VDGAISISAVQWLC 127 (291)
Q Consensus 114 fD~Vis~~~l~~l~ 127 (291)
.-++++-.++.|+.
T Consensus 158 ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 158 PTLFIAEGVLMYLS 171 (183)
T ss_dssp EEEEEEESSGGGS-
T ss_pred CeEEEEcchhhcCC
Confidence 77888889999984
No 377
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.92 E-value=14 Score=35.21 Aligned_cols=68 Identities=24% Similarity=0.093 Sum_probs=44.7
Q ss_pred CeEEEEcCCC-chhH-HHHHHcC-CeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCCC--CCCcccEEEEC
Q 043626 53 RLLLDIGCGS-GLSG-ETLSENG-HQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLGL--RPGVVDGAISI 120 (291)
Q Consensus 53 ~~VLDiGcGs-G~~~-~~L~~~g-~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~~--~~~~fD~Vis~ 120 (291)
..||=||||. |... ..|+..+ ..|+..|-|...++.+.... ..++.+..|+.+.-.. --..+|+||+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 4789999954 4322 3334556 89999999988887776553 4677888887442110 12345998865
No 378
>PRK06701 short chain dehydrogenase; Provisional
Probab=80.85 E-value=9.3 Score=34.40 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHH-HHHHHHh----cCCcceEEEccCCCCCC----CC-----CCcc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQS-MLNIALE----REVEGDLLLGDMGQGLG----LR-----PGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~-ml~~a~~----~~~~~~~~~~D~~~~~~----~~-----~~~f 114 (291)
+..||-.|++.|. ++..|+++|..|+.++.++. .++.... ...++.++.+|+.+.-. +. -+.+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4578888876654 44555567899999887642 2222111 12245678888854211 10 1468
Q ss_pred cEEEECCchhhhccc--cccC-------CchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 115 DGAISISAVQWLCNA--DKAS-------HEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 115 D~Vis~~~l~~l~~~--~~~~-------~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
|+||.+......... +... .........+++.+...++++|.+++.
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 998876543211100 0000 000111244455666666777877763
No 379
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.78 E-value=12 Score=34.21 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=72.3
Q ss_pred CeEEEEcCCCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc--------ceEEEccCC-CCC-------CCCCCccc
Q 043626 53 RLLLDIGCGSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVE--------GDLLLGDMG-QGL-------GLRPGVVD 115 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~--------~~~~~~D~~-~~~-------~~~~~~fD 115 (291)
..|+-+|||-=.-...+-.. +..|+-+|. |..++.=.+.+.+ ..++..|+. +.. .|....-=
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt 172 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPT 172 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCe
Confidence 58999999876666655554 588999998 5565554444332 467788886 222 24455666
Q ss_pred EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
++|+-.++.+| |.....++|..+...+.||..+++...
T Consensus 173 ~~iaEGLl~YL---------~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 173 LWIAEGLLMYL---------PEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred EEEeccccccC---------CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 78888999998 445688999999999999998888763
No 380
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=80.68 E-value=15 Score=34.89 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=26.7
Q ss_pred eEEEEcCCC-chhHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626 54 LLLDIGCGS-GLSGETLSENGHQWIGLDISQSMLNIALER 92 (291)
Q Consensus 54 ~VLDiGcGs-G~~~~~L~~~g~~v~gvDis~~ml~~a~~~ 92 (291)
+|-=||+|. |.-...+...|+.|+++|+++..++.+.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcC
Confidence 355567773 443333333589999999999999888764
No 381
>PLN02494 adenosylhomocysteinase
Probab=80.54 E-value=13 Score=36.33 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=62.3
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCC-chhHH-HHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcc
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGS-GLSGE-TLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVV 114 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGs-G~~~~-~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~f 114 (291)
.+.++...+..-. +.+|+=+|+|. |.... .+...|..|+++|+++.-...+..... .++ ++.+.+ ...
T Consensus 241 ~d~i~r~t~i~La--GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~--~vv--~leEal----~~A 310 (477)
T PLN02494 241 PDGLMRATDVMIA--GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGY--QVL--TLEDVV----SEA 310 (477)
T ss_pred HHHHHHhcCCccC--CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCC--eec--cHHHHH----hhC
Confidence 3444444444222 67999999985 43222 223347899999999865434433211 111 221211 356
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHH
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGA 175 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~ 175 (291)
|+|++...-.+ -+.......|++||.++..-.....-....+...
T Consensus 311 DVVI~tTGt~~----------------vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 311 DIFVTTTGNKD----------------IIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CEEEECCCCcc----------------chHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 98886322111 2346778899999999876544444444444443
No 382
>PRK10083 putative oxidoreductase; Provisional
Probab=80.46 E-value=12 Score=34.15 Aligned_cols=91 Identities=18% Similarity=0.126 Sum_probs=51.9
Q ss_pred CCeEEEEcCCC-chhHHHHHH-c-CC-eEEEEeCCHHHHHHHHhcCCcceEEEc---cCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-N-GH-QWIGLDISQSMLNIALEREVEGDLLLG---DMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~---D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+.+||=+|+|. |.....+++ . |. .++++|.++..++.+.+.... .++.. ++.+.+.-....+|+|+....-
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~g~~~d~vid~~g~- 238 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-WVINNAQEPLGEALEEKGIKPTLIIDAACH- 238 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-EEecCccccHHHHHhcCCCCCCEEEECCCC-
Confidence 66888888653 334444555 3 74 688999999988888764432 11111 1101111011234676643210
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+....++|+++|+++..
T Consensus 239 ----------------~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 239 ----------------PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred ----------------HHHHHHHHHHhhcCCEEEEE
Confidence 13466778899999998864
No 383
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=80.33 E-value=16 Score=33.49 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=51.8
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCC--CC-C-CCCCccc-EEEECCch
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQ--GL-G-LRPGVVD-GAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~--~~-~-~~~~~fD-~Vis~~~l 123 (291)
+.+||=+|||+ |..+..+++. |.. +++++.++..++.+++.... .++..+-.. .+ . .....+| +|+-...
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G- 238 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAM-QTFNSREMSAPQIQSVLRELRFDQLILETAG- 238 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-eEecCcccCHHHHHHHhcCCCCCeEEEECCC-
Confidence 66888888754 4444444443 654 79999999988887653321 222111000 00 0 1123567 5553211
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
-...+....++|++||++++.
T Consensus 239 ----------------~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 239 ----------------VPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred ----------------CHHHHHHHHHHhhcCCEEEEE
Confidence 124566788999999998864
No 384
>PRK07063 short chain dehydrogenase; Provisional
Probab=80.15 E-value=14 Score=32.27 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCCC---------CCCc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLGL---------RPGV 113 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~~---------~~~~ 113 (291)
+..||-.|+++|. +...|++.|..|+.++.++..++...... ..+.++.+|+.+.-.. ..+.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 86 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGP 86 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4588988886654 44556677899999999887766554332 2356788888542111 1257
Q ss_pred ccEEEECCch
Q 043626 114 VDGAISISAV 123 (291)
Q Consensus 114 fD~Vis~~~l 123 (291)
+|++|.+...
T Consensus 87 id~li~~ag~ 96 (260)
T PRK07063 87 LDVLVNNAGI 96 (260)
T ss_pred CcEEEECCCc
Confidence 8999987654
No 385
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=79.82 E-value=13 Score=33.93 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=56.7
Q ss_pred HHhCCCCCCCCCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEcc---CCCCC-C-CCCCcc
Q 043626 42 ELLALPDDGVPRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGD---MGQGL-G-LRPGVV 114 (291)
Q Consensus 42 elL~~~~~~~~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D---~~~~~-~-~~~~~f 114 (291)
+...+.+ +..||-.|+|. |.....++.. |..++++..++...+.+++.... .++... +.+.+ . .....+
T Consensus 153 ~~~~l~~---g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~-~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 153 RRAGVTA---GDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD-DTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred HhcCCCC---CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC-EEecCcccCHHHHHHHHhCCCCC
Confidence 3344444 66888888653 4444445544 78899998888888877554311 222111 00101 0 123458
Q ss_pred cEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 115 DGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 115 D~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
|+++....- ...+..+.++|+++|.++.
T Consensus 229 d~vld~~g~-----------------~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 229 DVVIDATGN-----------------PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CEEEECCCC-----------------HHHHHHHHHHHhcCCEEEE
Confidence 999864211 1346678889999999885
No 386
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=79.57 E-value=4.3 Score=38.49 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-------------
Q 043626 29 IIDIQAKLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE------------- 93 (291)
Q Consensus 29 ~~~iq~~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~------------- 93 (291)
..+.+..-...+++-|.+.+ ...-.|+|.|.|.....++..+ ..-+|+++....-+.|..+.
T Consensus 173 YGE~~~~ql~si~dEl~~g~---~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~ 249 (419)
T KOG3924|consen 173 YGETQLEQLRSIVDELKLGP---ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK 249 (419)
T ss_pred hhhhhHHHHHHHHHHhccCC---CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC
Confidence 34445555566777778876 6799999999999888888764 56778887665444443321
Q ss_pred -CcceEEEccCCCC--CCCCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 94 -VEGDLLLGDMGQG--LGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 94 -~~~~~~~~D~~~~--~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
..+..+.++.... ...-....++|+++.+. ++|...+ =+.++..-+++|-+++-
T Consensus 250 ~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~----------Fdp~L~l--r~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 250 PNKIETIHGSFLDPKRVTEIQTEATVIFVNNVA----------FDPELKL--RSKEILQKCKDGTRIIS 306 (419)
T ss_pred cCceeecccccCCHHHHHHHhhcceEEEEeccc----------CCHHHHH--hhHHHHhhCCCcceEec
Confidence 1234555554221 01112356777776553 2344333 34478888899988875
No 387
>PTZ00357 methyltransferase; Provisional
Probab=79.23 E-value=10 Score=38.74 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=43.8
Q ss_pred CeEEEEcCCCchhHHHHHHc----C--CeEEEEeCCHHHHHHHHhc------CCc--------ceEEEccCCCCCC----
Q 043626 53 RLLLDIGCGSGLSGETLSEN----G--HQWIGLDISQSMLNIALER------EVE--------GDLLLGDMGQGLG---- 108 (291)
Q Consensus 53 ~~VLDiGcGsG~~~~~L~~~----g--~~v~gvDis~~ml~~a~~~------~~~--------~~~~~~D~~~~~~---- 108 (291)
..|+=+|+|-|-+.....+. + .++++|+-++..+.....+ ..+ ++++..||...-+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999877555432 4 6899999996533232222 111 6889999965321
Q ss_pred ------CCCCcccEEEE
Q 043626 109 ------LRPGVVDGAIS 119 (291)
Q Consensus 109 ------~~~~~fD~Vis 119 (291)
...+.+|+|||
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 11247999997
No 388
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=79.20 E-value=9.4 Score=34.02 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=50.4
Q ss_pred HHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchHHHHHHH
Q 043626 66 GETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPRLRLKAF 143 (291)
Q Consensus 66 ~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~ 143 (291)
+..|.+.| .+|+|+|.++..++.|.+...--... .+. +. -..+|+||..- |......+
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~-~~~-~~----~~~~Dlvvlav--------------P~~~~~~~ 61 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGIIDEAS-TDI-EA----VEDADLVVLAV--------------PVSAIEDV 61 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEE-SHH-HH----GGCCSEEEE-S---------------HHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeecc-CCH-hH----hcCCCEEEEcC--------------CHHHHHHH
Confidence 56677777 89999999999999987654322222 111 11 13459988542 44447789
Q ss_pred HHHHHHhccCCcEEEEEEcCCChHHHHHH
Q 043626 144 FGSLYRCLARGARAVFQIYPESVAQRELI 172 (291)
Q Consensus 144 l~~l~~~LkpgG~lv~~~~~~~~~~~~~i 172 (291)
+.++...+++|+. ++.+..........+
T Consensus 62 l~~~~~~~~~~~i-v~Dv~SvK~~~~~~~ 89 (258)
T PF02153_consen 62 LEEIAPYLKPGAI-VTDVGSVKAPIVEAM 89 (258)
T ss_dssp HHHHHCGS-TTSE-EEE--S-CHHHHHHH
T ss_pred HHHhhhhcCCCcE-EEEeCCCCHHHHHHH
Confidence 9999998888754 445544443333333
No 389
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.13 E-value=0.77 Score=44.57 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=67.2
Q ss_pred CCeEEEEcCCCchhHHHHHHc--C-CeEEEEeCCHHHHHHHHhcCCc------ceEEEccCCCCC---CCCCCcccEEEE
Q 043626 52 PRLLLDIGCGSGLSGETLSEN--G-HQWIGLDISQSMLNIALEREVE------GDLLLGDMGQGL---GLRPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~--g-~~v~gvDis~~ml~~a~~~~~~------~~~~~~D~~~~~---~~~~~~fD~Vis 119 (291)
+.+|||.=|++|+-+...+.. | ..+++-|.++..++..+++... +.....|+...+ +-....||+|=.
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL 189 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL 189 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence 568999999999988777765 3 7899999999999988776532 233344442211 222467888763
Q ss_pred CCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 120 ISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 120 ~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
. |......||..+.++++.||.++++
T Consensus 190 D---------------PyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 190 D---------------PYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred C---------------CCCCccHHHHHHHHHhhcCCEEEEE
Confidence 2 3333568999999999999999984
No 390
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=79.08 E-value=13 Score=33.53 Aligned_cols=92 Identities=18% Similarity=0.046 Sum_probs=52.1
Q ss_pred eEEEEcCCCc--hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEcc------CCCCCCCCCCcccEEEECCchhh
Q 043626 54 LLLDIGCGSG--LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGD------MGQGLGLRPGVVDGAISISAVQW 125 (291)
Q Consensus 54 ~VLDiGcGsG--~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D------~~~~~~~~~~~fD~Vis~~~l~~ 125 (291)
+|+=||+|.- .++..|++.|+.|+.++. +..++...+....+.....+ ...........+|+||..---+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 5778888873 256667778999999998 66666555432111100001 0000111125688777531111
Q ss_pred hccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 126 LCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 126 l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
.+..++..+...+.++..+++.
T Consensus 80 -------------~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 80 -------------QLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred -------------CHHHHHHHHHhhcCCCCEEEEe
Confidence 1567788888888887766543
No 391
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=78.76 E-value=17 Score=33.19 Aligned_cols=119 Identities=15% Similarity=0.116 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC--CeEEEEeCCHHHHHHHHhcC-----CcceEEEccCCCCCCCC-CCcccEEEECCc
Q 043626 51 VPRLLLDIGCGSGLSGETLSENG--HQWIGLDISQSMLNIALERE-----VEGDLLLGDMGQGLGLR-PGVVDGAISISA 122 (291)
Q Consensus 51 ~~~~VLDiGcGsG~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~-----~~~~~~~~D~~~~~~~~-~~~fD~Vis~~~ 122 (291)
.+..|+=+| ---+.+.+++-.| ..+..|||++..+..-.+.. .++..+..|+.+.+|.. ...||+.+....
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch
Confidence 356788888 4445555555444 78999999998887554422 23778888987666522 468999885311
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCC---cEEEEEEcCCChHHHHHHHH-HHHHcCCC
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG---ARAVFQIYPESVAQRELILG-AAMRAGFA 182 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg---G~lv~~~~~~~~~~~~~i~~-~~~~aGF~ 182 (291)
. .-..++.|+..=.+.|+.- |++.++....+-+.-..|.. +....||-
T Consensus 231 -e-----------Ti~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 231 -E-----------TIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV 282 (354)
T ss_pred -h-----------hHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence 1 1123677777777788765 77888775555555555666 44556664
No 392
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=78.69 E-value=70 Score=31.45 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=72.0
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHH---cC---CeEEEEeCCHHHHHHHHhcC--C--cc---eEEEc
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSE---NG---HQWIGLDISQSMLNIALERE--V--EG---DLLLG 101 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~---~g---~~v~gvDis~~ml~~a~~~~--~--~~---~~~~~ 101 (291)
.+++.+.+++....+ ..+.|.|..||+|.+...... .+ ..++|.++...|...|..+. . .. ....+
T Consensus 202 ~Iv~l~~~~~~~~~d-p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~ 280 (501)
T TIGR00497 202 DISELLARIAIGKKD-TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINA 280 (501)
T ss_pred HHHHHHHHHhccCCC-CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccC
Confidence 445555566554332 157999999999997754332 12 56899999999999888752 1 11 12223
Q ss_pred cCCCCCCC-CCCcccEEEECCchh--hhcc-------cccc-CCc--h--HHHHHHHHHHHHHhccCCcEEEEE
Q 043626 102 DMGQGLGL-RPGVVDGAISISAVQ--WLCN-------ADKA-SHE--P--RLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 102 D~~~~~~~-~~~~fD~Vis~~~l~--~l~~-------~~~~-~~~--p--~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
|-.....+ ....||.|+++..+. |-.. ++.. ..+ | ...=..|+......|++||+..+.
T Consensus 281 dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 281 DTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 32121112 235699999886432 2111 1100 000 1 112357888889999999986654
No 393
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=78.60 E-value=18 Score=32.59 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=65.4
Q ss_pred eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+|.=||+|. | .+...|+..|+.+++.|.++..++.+..... ....+..+ + ....|+|++.-...
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~---~~~~~~~e-~---~~~~d~vi~~vp~~------- 69 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGA---ETASTAKA-V---AEQCDVIITMLPNS------- 69 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCC---eecCCHHH-H---HhcCCEEEEeCCCH-------
Confidence 577788886 3 3567777788999999999987766554321 11112211 1 13568888652211
Q ss_pred cCCchHHHHHHHH---HHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626 132 ASHEPRLRLKAFF---GSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS 192 (291)
Q Consensus 132 ~~~~p~~~l~~~l---~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~ 192 (291)
.....++ ..+...+++|- +++.+....+.....+.+.+...|+ .+++-|-+
T Consensus 70 ------~~~~~v~~~~~~~~~~~~~g~-iiid~st~~~~~~~~l~~~~~~~g~---~~~d~pv~ 123 (296)
T PRK11559 70 ------PHVKEVALGENGIIEGAKPGT-VVIDMSSIAPLASREIAAALKAKGI---EMLDAPVS 123 (296)
T ss_pred ------HHHHHHHcCcchHhhcCCCCc-EEEECCCCCHHHHHHHHHHHHHcCC---cEEEcCCC
Confidence 1123333 33556666655 4455555556666677777776654 34555544
No 394
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.57 E-value=13 Score=33.59 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=29.5
Q ss_pred eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 043626 54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALE 91 (291)
Q Consensus 54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~ 91 (291)
+|.=||||. | .++..++..|+.|+.+|.++..++.+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 44 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAME 44 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 688889886 3 3556667778999999999998876544
No 395
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=78.35 E-value=23 Score=32.93 Aligned_cols=91 Identities=20% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccC-CCCC-----CCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDM-GQGL-----GLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~-~~~~-----~~~~~~fD~Vis~~~ 122 (291)
+..||=+|+|. |..+..+++. |. .++++|.++..++.+++.... .++...- ...+ ....+.+|+|+-...
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G 266 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVT-EFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG 266 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-eEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 67888888753 3344444443 65 799999999999888664321 2221110 0000 111235888874311
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ 160 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~ 160 (291)
- ...+.....++++| |++++.
T Consensus 267 ~-----------------~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 267 N-----------------IDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred C-----------------hHHHHHHHHHhhcCCCEEEEE
Confidence 1 13556677888996 988764
No 396
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=78.28 E-value=4.7 Score=36.25 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-------CeEEEEeCCH
Q 043626 52 PRLLLDIGCGSGLSGETLSENG-------HQWIGLDISQ 83 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g-------~~v~gvDis~ 83 (291)
+..++|+|||.|.++..++... ..++.||-..
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 6799999999999999888642 5789999754
No 397
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=78.25 E-value=37 Score=30.61 Aligned_cols=83 Identities=25% Similarity=0.281 Sum_probs=49.8
Q ss_pred CCeEEEEcCCCchhHHHH---H-HcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGSGLSGETL---S-ENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L---~-~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+..||=.||| .++..+ + ..|..+++++.+....+.+.+.. ++.+. +... . ....+|+++.....
T Consensus 168 ~~~vlV~g~g--~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g--~~~~~-~~~~-~--~~~~vD~vi~~~~~---- 235 (329)
T cd08298 168 GQRLGLYGFG--ASAHLALQIARYQGAEVFAFTRSGEHQELARELG--ADWAG-DSDD-L--PPEPLDAAIIFAPV---- 235 (329)
T ss_pred CCEEEEECCc--HHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhC--CcEEe-ccCc-c--CCCcccEEEEcCCc----
Confidence 4566667765 444433 3 34788999999888887775432 22221 1111 1 23458887743111
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
...+..+.++|+++|++++
T Consensus 236 -------------~~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 236 -------------GALVPAALRAVKKGGRVVL 254 (329)
T ss_pred -------------HHHHHHHHHHhhcCCEEEE
Confidence 1356778999999999985
No 398
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=78.04 E-value=38 Score=32.46 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=29.0
Q ss_pred CeEEEEcCCCc--hhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 043626 53 RLLLDIGCGSG--LSGETLSENGHQWIGLDISQSMLNIAL 90 (291)
Q Consensus 53 ~~VLDiGcGsG--~~~~~L~~~g~~v~gvDis~~ml~~a~ 90 (291)
.+|.=||.|.- .++..|++.|++|+++|+++..++...
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~ 43 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN 43 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 36777888853 255667788999999999999888643
No 399
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=77.97 E-value=20 Score=35.08 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=64.4
Q ss_pred EcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcc-eEEEc-cCCCCCCCCCCcccEEEECCchhhhccccccC
Q 043626 58 IGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEG-DLLLG-DMGQGLGLRPGVVDGAISISAVQWLCNADKAS 133 (291)
Q Consensus 58 iGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~-~~~~~-D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~ 133 (291)
||+|. +.++..|++.|+.|++.|.++..++.+.+..... .+... ++ ..+...-...|+|+..-.
T Consensus 5 IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~-~e~v~~l~~~dvIil~v~----------- 72 (467)
T TIGR00873 5 IGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSI-EEFVQSLERPRKIMLMVK----------- 72 (467)
T ss_pred EeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCH-HHHHhhcCCCCEEEEECC-----------
Confidence 55554 2345566677899999999999888776542111 11111 11 111000123576664311
Q ss_pred CchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626 134 HEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK 194 (291)
Q Consensus 134 ~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~ 194 (291)
+......++..+...|.+|- +++......+.........+...|. .+++-|-+..
T Consensus 73 --~~~~v~~Vi~~l~~~L~~g~-iIID~gns~~~~t~~~~~~l~~~gi---~fvdapVsGG 127 (467)
T TIGR00873 73 --AGAPVDAVINQLLPLLEKGD-IIIDGGNSHYPDTERRYKELKAKGI---LFVGSGVSGG 127 (467)
T ss_pred --CcHHHHHHHHHHHhhCCCCC-EEEECCCcCHHHHHHHHHHHHhcCC---EEEcCCCCCC
Confidence 11225667788888888764 5555544444444445555665554 4666666643
No 400
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=77.95 E-value=14 Score=34.40 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=52.1
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc-C----CCCC-CCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD-M----GQGL-GLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D-~----~~~~-~~~~~~fD~Vis~~~ 122 (291)
+.+||=+|+|+ |..+..+++. |. .|+++|.++..++.+.+.... .++... . ...+ ....+.+|+|+-...
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~-~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g 263 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGAT-DFINPKDSDKPVSEVIREMTGGGVDYSFECTG 263 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC-cEeccccccchHHHHHHHHhCCCCCEEEECCC
Confidence 66888888753 3344444444 65 799999999988888654321 122111 0 0000 011245898884311
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCC-cEEEEE
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARG-ARAVFQ 160 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~Lkpg-G~lv~~ 160 (291)
- ...+....++|+++ |++++.
T Consensus 264 ~-----------------~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 264 N-----------------ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred C-----------------hHHHHHHHHhcccCCCEEEEE
Confidence 0 13566678889885 888764
No 401
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=77.91 E-value=31 Score=31.36 Aligned_cols=89 Identities=11% Similarity=0.071 Sum_probs=53.3
Q ss_pred CeEEEEcC--CCchhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-CCCCCcccEEEECCchh
Q 043626 53 RLLLDIGC--GSGLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-GLRPGVVDGAISISAVQ 124 (291)
Q Consensus 53 ~~VLDiGc--GsG~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~~~~~~fD~Vis~~~l~ 124 (291)
.+||=.|+ |.|..+..+++. |. .+++++.++...+.+.+...--.++...-.. .+ ......+|+|+....-
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~- 234 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG- 234 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc-
Confidence 68888886 345565556654 76 7999999998887776533211222211000 00 1112468988853111
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
..+....++|+++|+++.
T Consensus 235 -----------------~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 235 -----------------EISDTVISQMNENSHIIL 252 (345)
T ss_pred -----------------HHHHHHHHHhccCCEEEE
Confidence 124677889999999885
No 402
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=77.90 E-value=23 Score=30.79 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=45.0
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCCC---------CCCcccEEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLGL---------RPGVVDGAI 118 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~~---------~~~~fD~Vi 118 (291)
+..||=.|+++|. +...|+++|++|+.+|-+...++...... ..+.++.+|+.+.-.. .-+..|++|
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li 85 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILF 85 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4578888855443 33444567899999999988766554432 3466778887542110 124689988
Q ss_pred ECCch
Q 043626 119 SISAV 123 (291)
Q Consensus 119 s~~~l 123 (291)
.+...
T Consensus 86 ~~ag~ 90 (257)
T PRK07067 86 NNAAL 90 (257)
T ss_pred ECCCc
Confidence 76543
No 403
>PRK08324 short chain dehydrogenase; Validated
Probab=77.83 E-value=12 Score=38.18 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=46.1
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCC----C-----CCCcccE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLG----L-----RPGVVDG 116 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~----~-----~~~~fD~ 116 (291)
+..||=.|++.|. +...|++.|.+|+++|.++..++.+.... ..+.++.+|+.+.-. + ..+.+|+
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDv 501 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDI 501 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4688888865442 33445566899999999998776554432 245677788754211 1 1246899
Q ss_pred EEECCch
Q 043626 117 AISISAV 123 (291)
Q Consensus 117 Vis~~~l 123 (291)
||.+..+
T Consensus 502 vI~~AG~ 508 (681)
T PRK08324 502 VVSNAGI 508 (681)
T ss_pred EEECCCC
Confidence 9987654
No 404
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=77.80 E-value=36 Score=32.29 Aligned_cols=92 Identities=17% Similarity=0.069 Sum_probs=54.5
Q ss_pred CCeEEEEc-CC-CchhHHHHHHc-C---CeEEEEeCCHHHHHHHHhcCC------cceEEEccCCC--CC-----CC-CC
Q 043626 52 PRLLLDIG-CG-SGLSGETLSEN-G---HQWIGLDISQSMLNIALEREV------EGDLLLGDMGQ--GL-----GL-RP 111 (291)
Q Consensus 52 ~~~VLDiG-cG-sG~~~~~L~~~-g---~~v~gvDis~~ml~~a~~~~~------~~~~~~~D~~~--~~-----~~-~~ 111 (291)
+.+||=+| || .|..+..+++. | ..++++|.++..++.+++... ..+....+..+ .+ .+ ..
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g 255 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGG 255 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCC
Confidence 56888887 45 36666666665 3 379999999999998877521 11211112111 11 01 12
Q ss_pred CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
..+|+|+....- ...+....++|+++|.+++.
T Consensus 256 ~g~D~vid~~g~-----------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 256 QGFDDVFVFVPV-----------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCEEEEcCCC-----------------HHHHHHHHHHhccCCeEEEE
Confidence 358888853211 14566778899988876654
No 405
>PRK07806 short chain dehydrogenase; Provisional
Probab=77.76 E-value=20 Score=30.86 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCH-HHHHHHH----hcCCcceEEEccCCCCCCC---------CCCcc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQ-SMLNIAL----EREVEGDLLLGDMGQGLGL---------RPGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~-~ml~~a~----~~~~~~~~~~~D~~~~~~~---------~~~~f 114 (291)
+.+||-.|+..|. +...|++.|+.|++++-+. ..++... .....+.++.+|+...-.. ..+.+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGL 85 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 4588888875443 3344445688998887653 2222221 1122356778887542110 01468
Q ss_pred cEEEECCchhhhcc--ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 115 DGAISISAVQWLCN--ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 115 D~Vis~~~l~~l~~--~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
|++|.+........ .......-......+++.+...++.+|++++.
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 86 DALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred cEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 98887654321100 00000001111345666677776667777763
No 406
>PRK05854 short chain dehydrogenase; Provisional
Probab=77.49 E-value=28 Score=31.72 Aligned_cols=73 Identities=15% Similarity=0.037 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCC---------CCCCCc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGL---------GLRPGV 113 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~---------~~~~~~ 113 (291)
+..+|=.|+++|. ++..|++.|.+|+.++-+..-++.+.... ..+.++..|+.+.- .-..+.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~ 93 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRP 93 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 4578888887664 44555667899999998876554443321 23577888885421 111357
Q ss_pred ccEEEECCchh
Q 043626 114 VDGAISISAVQ 124 (291)
Q Consensus 114 fD~Vis~~~l~ 124 (291)
.|++|.+..+.
T Consensus 94 iD~li~nAG~~ 104 (313)
T PRK05854 94 IHLLINNAGVM 104 (313)
T ss_pred ccEEEECCccc
Confidence 89999886543
No 407
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=77.34 E-value=53 Score=30.18 Aligned_cols=91 Identities=22% Similarity=0.139 Sum_probs=50.8
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCC------C-C-CCCCcccEEEEC
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQG------L-G-LRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~------~-~-~~~~~fD~Vis~ 120 (291)
+..||=.|+|. |..+..++. .|. ++++++.++...+.+.+.... .++...-... + . .....+|+|+..
T Consensus 178 g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 256 (361)
T cd08231 178 GDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGAD-ATIDIDELPDPQRRAIVRDITGGRGADVVIEA 256 (361)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCC-eEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence 56777787642 333333333 366 899999999888777543221 1221110000 0 0 112468988853
Q ss_pred CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
..- ...+....++|+++|++++.
T Consensus 257 ~g~-----------------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 257 SGH-----------------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CCC-----------------hHHHHHHHHHhccCCEEEEE
Confidence 111 13455677899999999853
No 408
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=77.29 E-value=9.6 Score=31.30 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=64.8
Q ss_pred eEEEEcCCCc--hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 54 LLLDIGCGSG--LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 54 ~VLDiGcGsG--~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+|-=||+|.= .....|.+.|+.+++.|.+++.++.+.+.. -....+..+ + ....|+|++. + ++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g---~~~~~s~~e-~---~~~~dvvi~~--v---~~--- 67 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG---AEVADSPAE-A---AEQADVVILC--V---PD--- 67 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT---EEEESSHHH-H---HHHBSEEEE---S---SS---
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh---hhhhhhhhh-H---hhcccceEee--c---cc---
Confidence 4555777652 244555667999999999998887776553 112222211 1 1244888864 1 11
Q ss_pred cCCchHHHHHHHHHH--HHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626 132 ASHEPRLRLKAFFGS--LYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS 192 (291)
Q Consensus 132 ~~~~p~~~l~~~l~~--l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~ 192 (291)
......++.. +...|++| .+++.+....+.....+.+.+...|. .++|-|-+
T Consensus 68 -----~~~v~~v~~~~~i~~~l~~g-~iiid~sT~~p~~~~~~~~~~~~~g~---~~vdapV~ 121 (163)
T PF03446_consen 68 -----DDAVEAVLFGENILAGLRPG-KIIIDMSTISPETSRELAERLAAKGV---RYVDAPVS 121 (163)
T ss_dssp -----HHHHHHHHHCTTHGGGS-TT-EEEEE-SS--HHHHHHHHHHHHHTTE---EEEEEEEE
T ss_pred -----chhhhhhhhhhHHhhccccc-eEEEecCCcchhhhhhhhhhhhhccc---eeeeeeee
Confidence 1225566666 66666554 55566666777888888888888774 45555543
No 409
>PRK06196 oxidoreductase; Provisional
Probab=77.26 E-value=6.7 Score=35.69 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC---------CCCCcccEEEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG---------LRPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~---------~~~~~fD~Vis 119 (291)
+..||=.|++.|. +...|++.|+.|++++-++..++.+......+.++.+|+.+.-. -..+..|++|.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~ 105 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILIN 105 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4588888865543 33444556899999999887666554444446788889864211 01257899998
Q ss_pred CCch
Q 043626 120 ISAV 123 (291)
Q Consensus 120 ~~~l 123 (291)
+..+
T Consensus 106 nAg~ 109 (315)
T PRK06196 106 NAGV 109 (315)
T ss_pred CCCC
Confidence 7654
No 410
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=77.08 E-value=15 Score=33.30 Aligned_cols=89 Identities=27% Similarity=0.242 Sum_probs=54.8
Q ss_pred CCeEEEEcCCC--chhHHHHHHcCC--eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGS--GLSGETLSENGH--QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGs--G~~~~~L~~~g~--~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
...|+=+|.|- |.++..|.+.|+ .++|.|.+...+..+.+....-+... +. .-......|+||..-
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~-~~---~~~~~~~aD~Vivav------ 72 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTV-AG---LAEAAAEADLVIVAV------ 72 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCccccccc-ch---hhhhcccCCEEEEec------
Confidence 34777888775 556677777774 56889998888877765432211111 10 011134579988642
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAV 158 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv 158 (291)
|-.....+++++...|++|..+.
T Consensus 73 --------Pi~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 73 --------PIEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred --------cHHHHHHHHHHhcccCCCCCEEE
Confidence 33336688888888888876544
No 411
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.03 E-value=29 Score=30.44 Aligned_cols=72 Identities=13% Similarity=-0.072 Sum_probs=43.6
Q ss_pred CCeEEEEcCCCc-hhHH----HHHHcCCeEEEEeCCHHHH---HHHHhcCCcceEEEccCCCCCC---------CCCCcc
Q 043626 52 PRLLLDIGCGSG-LSGE----TLSENGHQWIGLDISQSML---NIALEREVEGDLLLGDMGQGLG---------LRPGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG-~~~~----~L~~~g~~v~gvDis~~ml---~~a~~~~~~~~~~~~D~~~~~~---------~~~~~f 114 (291)
+..+|-.|+++| .++. .|++.|..|+.++.+.... +...+......++.+|+.+.-. -..+..
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~l 89 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRL 89 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCC
Confidence 468899998762 4444 4556688998888875432 2222222234567788754211 112678
Q ss_pred cEEEECCch
Q 043626 115 DGAISISAV 123 (291)
Q Consensus 115 D~Vis~~~l 123 (291)
|++|.+..+
T Consensus 90 d~lv~nAg~ 98 (258)
T PRK07533 90 DFLLHSIAF 98 (258)
T ss_pred CEEEEcCcc
Confidence 999988654
No 412
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=76.94 E-value=30 Score=33.90 Aligned_cols=123 Identities=10% Similarity=0.006 Sum_probs=71.1
Q ss_pred eEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc-c-eE-EEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626 54 LLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVE-G-DL-LLGDMGQGLGLRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 54 ~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~-~-~~-~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~ 128 (291)
.|-=||.|. +.++..|++.|+.|++.|.+++.++...+.... . .+ ...++.+.+. .-...|+|+..-.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~-~l~~~d~Iil~v~------ 75 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVN-SLKKPRKVILLIK------ 75 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHh-cCCCCCEEEEEeC------
Confidence 455567665 336667778899999999999987766553211 1 11 1112211110 0113575554311
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK 194 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~ 194 (291)
|......++..+...|++|- +++......+.........+...|. .+++-|-+..
T Consensus 76 -------~~~~v~~vi~~l~~~L~~g~-iIID~gn~~~~dt~~r~~~l~~~Gi---~fldapVSGG 130 (470)
T PTZ00142 76 -------AGEAVDETIDNLLPLLEKGD-IIIDGGNEWYLNTERRIKRCEEKGI---LYLGMGVSGG 130 (470)
T ss_pred -------ChHHHHHHHHHHHhhCCCCC-EEEECCCCCHHHHHHHHHHHHHcCC---eEEcCCCCCC
Confidence 22236677888888888775 4555555555566666677777665 4666666654
No 413
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.87 E-value=23 Score=30.24 Aligned_cols=70 Identities=19% Similarity=0.013 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCchhHHHH----HHcCCeEEEEeCCHHHHHHHHhcC---CcceEEEccCCCCCCC---------CCCccc
Q 043626 52 PRLLLDIGCGSGLSGETL----SENGHQWIGLDISQSMLNIALERE---VEGDLLLGDMGQGLGL---------RPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L----~~~g~~v~gvDis~~ml~~a~~~~---~~~~~~~~D~~~~~~~---------~~~~fD 115 (291)
+..||-+|. +|.+|..+ +++|..|++++.++..+....... ..+.++.+|+.+...+ ..+.+|
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 84 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD 84 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 357888885 55555444 456889999998887655443332 3467788888542111 014689
Q ss_pred EEEECCc
Q 043626 116 GAISISA 122 (291)
Q Consensus 116 ~Vis~~~ 122 (291)
+||.+..
T Consensus 85 ~vi~~ag 91 (237)
T PRK07326 85 VLIANAG 91 (237)
T ss_pred EEEECCC
Confidence 9887643
No 414
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=76.86 E-value=18 Score=32.80 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=67.7
Q ss_pred eEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccc
Q 043626 54 LLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADK 131 (291)
Q Consensus 54 ~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~ 131 (291)
+|-=||+|. +.+...|++.|+.|+++|.++..++.+.+.... ...+..+ .....|+||..-.-.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~---~~~s~~~----~~~~aDvVi~~vp~~------- 68 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGAT---PAASPAQ----AAAGAEFVITMLPNG------- 68 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCc---ccCCHHH----HHhcCCEEEEecCCH-------
Confidence 455577775 345566677789999999999887766543211 1111100 013457777541111
Q ss_pred cCCchHHHHHHHHH---HHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCCC
Q 043626 132 ASHEPRLRLKAFFG---SLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSSK 194 (291)
Q Consensus 132 ~~~~p~~~l~~~l~---~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~~ 194 (291)
..+..++. .+...+++ |.+++.+....+.....+...+...|+. ++|.|-+..
T Consensus 69 ------~~~~~vl~~~~~i~~~l~~-g~lvid~sT~~p~~~~~l~~~l~~~g~~---~ldapV~g~ 124 (296)
T PRK15461 69 ------DLVRSVLFGENGVCEGLSR-DALVIDMSTIHPLQTDKLIADMQAKGFS---MMDVPVGRT 124 (296)
T ss_pred ------HHHHHHHcCcccHhhcCCC-CCEEEECCCCCHHHHHHHHHHHHHcCCc---EEEccCCCC
Confidence 11233332 23444554 4566666666777888888888888864 567766543
No 415
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.78 E-value=48 Score=30.32 Aligned_cols=90 Identities=19% Similarity=0.188 Sum_probs=53.4
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-CC-CCCcccEEEECCch
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-GL-RPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~~-~~~~fD~Vis~~~l 123 (291)
+.+||-.|+|. |..+..+++. |. .++++|.++..++.+++.... .++...-.. .+ .+ ....+|+|+....-
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~-~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 245 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGAT-DIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG 245 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc-eEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence 56888888753 4444445544 65 699999999888888764321 222111000 00 11 12458988853111
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
...+..+.++|+++|+++.
T Consensus 246 -----------------~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 246 -----------------QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred -----------------HHHHHHHHHHhhcCCEEEE
Confidence 1456778899999999885
No 416
>PRK07576 short chain dehydrogenase; Provisional
Probab=76.50 E-value=23 Score=31.09 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=42.4
Q ss_pred CCeEEEEcCCCchhHH----HHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCC----C-----CCCcc
Q 043626 52 PRLLLDIGCGSGLSGE----TLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLG----L-----RPGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~----~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~----~-----~~~~f 114 (291)
+..||-.|. +|.++. .|+..|+.|++++.++..+...... ...+.++..|+.+.-. + ..+.+
T Consensus 9 ~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 9 GKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 457888885 444444 4556689999999987765443222 1234667788754211 0 12468
Q ss_pred cEEEECCc
Q 043626 115 DGAISISA 122 (291)
Q Consensus 115 D~Vis~~~ 122 (291)
|++|.+..
T Consensus 88 D~vi~~ag 95 (264)
T PRK07576 88 DVLVSGAA 95 (264)
T ss_pred CEEEECCC
Confidence 99997653
No 417
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=76.40 E-value=20 Score=32.67 Aligned_cols=87 Identities=21% Similarity=0.122 Sum_probs=52.1
Q ss_pred CeEEEEcCCC-c-hhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626 53 RLLLDIGCGS-G-LSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 53 ~~VLDiGcGs-G-~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~ 128 (291)
.+|.=||+|. | .++..|...| ..|+++|.++..++.+...... .....+..+ .....|+||..-...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~-~~~~~~~~~----~~~~aDvViiavp~~---- 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLG-DRVTTSAAE----AVKGADLVILCVPVG---- 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCC-ceecCCHHH----HhcCCCEEEECCCHH----
Confidence 4788899886 3 3445566666 4899999999888877653221 111112111 123578888653222
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcEEE
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGARAV 158 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv 158 (291)
....++..+...+++|..++
T Consensus 78 ----------~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 ----------ASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ----------HHHHHHHHHHhhCCCCCEEE
Confidence 24466777777888887443
No 418
>PRK12939 short chain dehydrogenase; Provisional
Probab=76.27 E-value=25 Score=30.21 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=43.9
Q ss_pred CCeEEEEcCCCchhHHHH----HHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCC----CC-----CCcc
Q 043626 52 PRLLLDIGCGSGLSGETL----SENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLG----LR-----PGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L----~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~----~~-----~~~f 114 (291)
+..||=.|+ +|.++..+ ++.|+.+++++.++..+...... ...+.++.+|+.+... +. .+.+
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 457887776 44455444 45689999999887755544332 2346778888854211 10 1468
Q ss_pred cEEEECCch
Q 043626 115 DGAISISAV 123 (291)
Q Consensus 115 D~Vis~~~l 123 (291)
|+||.+...
T Consensus 86 d~vi~~ag~ 94 (250)
T PRK12939 86 DGLVNNAGI 94 (250)
T ss_pred CEEEECCCC
Confidence 999877543
No 419
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=75.94 E-value=19 Score=33.04 Aligned_cols=90 Identities=22% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cCC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCCC----C-CC-CCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NGH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQG----L-GL-RPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~----~-~~-~~~~fD~Vis~~~ 122 (291)
+.+||=.|+|. |..+..++. .|. .+++++.++...+.+.+... +.+...-... + .+ ....+|+|+-...
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga--~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g 250 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA--TIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAG 250 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC--CEEECCCccCHHHHHHHHhCCCCCCEEEECCC
Confidence 56788787642 233333333 366 89999999998888865322 2221110000 0 11 1234899985422
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
. ...+..+.++|+++|+++..
T Consensus 251 ~-----------------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 251 V-----------------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred C-----------------HHHHHHHHHhccCCCEEEEE
Confidence 1 13466778899999998864
No 420
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=75.81 E-value=43 Score=30.54 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=54.7
Q ss_pred CCeEEEEcCC--CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEc----cCCCCC-CCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCG--SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLG----DMGQGL-GLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcG--sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~----D~~~~~-~~~~~~fD~Vis~~~l 123 (291)
+.+||=.|+. .|..+..+++. |..+++++.++...+.+++...--.++.. +..+.+ ....+.+|+|+-...
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g- 230 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG- 230 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC-
Confidence 6789988863 35555555544 78899999999888888762221122221 110000 111246888885311
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|+++..
T Consensus 231 -----------------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 231 -----------------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred -----------------HHHHHHHHHHhccCcEEEEe
Confidence 13466788999999998853
No 421
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.45 E-value=9.9 Score=35.29 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=56.1
Q ss_pred CCeEEEEcC-CCchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEc----cCCCCC-CCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGC-GSGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLG----DMGQGL-GLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGc-GsG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~----D~~~~~-~~~~~~fD~Vis~~~l~ 124 (291)
+..|-=+|. |-|.++..+++. |.+|+++|-+..--+.|.+++-.-.|+.. |+...+ ..-++-.|.|++. +
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~-a-- 258 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL-A-- 258 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec-c--
Confidence 556666664 468888888876 89999999998555555554432222221 111111 1112334444432 1
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCC
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPES 165 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~ 165 (291)
...|..+..+||++|.+++.-.|+.
T Consensus 259 ----------------~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 259 ----------------EHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred ----------------ccchHHHHHHhhcCCEEEEEeCcCC
Confidence 1235567899999999999765554
No 422
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=74.58 E-value=44 Score=29.98 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=54.5
Q ss_pred CCeEEEEcCC--CchhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-CCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCG--SGLSGETLSEN-GHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-GLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcG--sG~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~~~~~~fD~Vis~~~l~ 124 (291)
+..||=.|++ .|..+..++.. |..+++++.++...+.+++.... .++...-.. .+ ....+.+|+|+....
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~-~vi~~~~~~~~~~v~~~~~~gvd~vld~~g-- 220 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFD-AVFNYKTVSLEEALKEAAPDGIDCYFDNVG-- 220 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC-EEEeCCCccHHHHHHHHCCCCcEEEEECCC--
Confidence 6788888743 35555555554 78899999999888888764321 222211100 00 111245888884311
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+....++|+++|+++..
T Consensus 221 ----------------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 221 ----------------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred ----------------HHHHHHHHHhhccCCEEEEE
Confidence 13456788999999998753
No 423
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=74.50 E-value=2.6 Score=40.35 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=40.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC
Q 043626 52 PRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREV 94 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~ 94 (291)
+..|-|+.||.|-+...++..+..|++-|.++.++++...+..
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIK 292 (495)
T ss_pred cchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcc
Confidence 5699999999999999999999999999999999999988764
No 424
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=74.39 E-value=4 Score=35.93 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIAL 90 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~ 90 (291)
.++..+++++.... ..+++|.-||+|.++..+...+..++.-|+++..+...+
T Consensus 7 ~l~~~I~~~ip~~~---~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPKNK---HKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S-S----SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCCCC---CCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 34566677765422 679999999999999999888899999999998777665
No 425
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=74.33 E-value=50 Score=31.28 Aligned_cols=101 Identities=18% Similarity=0.122 Sum_probs=55.2
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEcc----CCCCC-C-CCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGD----MGQGL-G-LRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D----~~~~~-~-~~~~~fD~Vis~~~ 122 (291)
+.+||=.|+|. |..+..++.. |. .++.+|.++.-++.+++.... .+... ..+.+ . .....+|+|+-...
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE--TVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe--EEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 55666677764 4444445543 64 466779999888888875432 22211 10000 0 11235898885432
Q ss_pred hh---hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 123 VQ---WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 123 l~---~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
.. |..+... ......+.....+|++||++++.
T Consensus 264 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 264 FEARGHGHDGKK------EAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred Cccccccccccc------cchHHHHHHHHHHhhCCCEEEEe
Confidence 21 1000000 00124678888999999999874
No 426
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=73.67 E-value=25 Score=31.96 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=51.9
Q ss_pred eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceE-----------EEccCCCCCCCCCCcccEEEEC
Q 043626 54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDL-----------LLGDMGQGLGLRPGVVDGAISI 120 (291)
Q Consensus 54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~-----------~~~D~~~~~~~~~~~fD~Vis~ 120 (291)
+|.=||+|. | .++..|++.|+.|+.+|.++..++........... ...|. .......|+||..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDL----AEALADADLILVA 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCH----HHHHhCCCEEEEe
Confidence 577788775 2 34555667789999999999887766654221111 01111 0011356877754
Q ss_pred CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
-.- ..+..++..+...+.++..++.
T Consensus 79 v~~--------------~~~~~v~~~l~~~~~~~~~vi~ 103 (325)
T PRK00094 79 VPS--------------QALREVLKQLKPLLPPDAPIVW 103 (325)
T ss_pred CCH--------------HHHHHHHHHHHhhcCCCCEEEE
Confidence 221 2256777888888888766553
No 427
>PRK08589 short chain dehydrogenase; Validated
Probab=73.64 E-value=28 Score=30.75 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCC---------CCCCccc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLG---------LRPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~---------~~~~~fD 115 (291)
+..+|=.|++.|. +...|++.|..|++++.++ .++...+. ...+.++..|+.+... -..+..|
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 84 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIAE-AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRVD 84 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH-HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCcC
Confidence 4578888887664 4455666799999999984 33332221 2235677888854211 0125689
Q ss_pred EEEECCch
Q 043626 116 GAISISAV 123 (291)
Q Consensus 116 ~Vis~~~l 123 (291)
++|.+..+
T Consensus 85 ~li~~Ag~ 92 (272)
T PRK08589 85 VLFNNAGV 92 (272)
T ss_pred EEEECCCC
Confidence 99987654
No 428
>PRK06500 short chain dehydrogenase; Provisional
Probab=73.54 E-value=35 Score=29.26 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC---------CCCCcccEEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG---------LRPGVVDGAI 118 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~---------~~~~~fD~Vi 118 (291)
+..||=.|++.|. +...|++.|..+++++.++..+....+.. ..+.++.+|+.+... -..+.+|++|
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 85 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVF 85 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 3477778775543 33445567899999998876655444332 235667778743211 0124689998
Q ss_pred ECCch
Q 043626 119 SISAV 123 (291)
Q Consensus 119 s~~~l 123 (291)
.+...
T Consensus 86 ~~ag~ 90 (249)
T PRK06500 86 INAGV 90 (249)
T ss_pred ECCCC
Confidence 77544
No 429
>PRK06953 short chain dehydrogenase; Provisional
Probab=73.42 E-value=22 Score=30.16 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=43.4
Q ss_pred eEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC-------CCCCcccEEEECCch
Q 043626 54 LLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG-------LRPGVVDGAISISAV 123 (291)
Q Consensus 54 ~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~-------~~~~~fD~Vis~~~l 123 (291)
.+|=.||+.|. +...|++.|..+++++.++..++..... .+.++..|+.+... +..+.+|+||.+...
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQAL--GAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhc--cceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 56767765443 4445556789999999988766554432 34677888765311 223468999987544
No 430
>PRK07109 short chain dehydrogenase; Provisional
Probab=73.31 E-value=24 Score=32.49 Aligned_cols=72 Identities=14% Similarity=0.227 Sum_probs=46.2
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCCC---------CCCccc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGL---------RPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~~---------~~~~fD 115 (291)
+..||=.|+++|. +...|++.|+.|+.++-++..++...+. ..++.++.+|+.+.-.. .-+.+|
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD 87 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPID 87 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 4578888876554 3344566789999999988766544332 23456778888552111 125789
Q ss_pred EEEECCch
Q 043626 116 GAISISAV 123 (291)
Q Consensus 116 ~Vis~~~l 123 (291)
++|.+...
T Consensus 88 ~lInnAg~ 95 (334)
T PRK07109 88 TWVNNAMV 95 (334)
T ss_pred EEEECCCc
Confidence 99987554
No 431
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=73.14 E-value=43 Score=30.38 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=52.0
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-C-CCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-G-LRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~-~~~~~fD~Vis~~~l 123 (291)
+..||-.|+|. |.....+++. |. .+++++.++...+.+++.... .++...-.. .+ . ...+.+|+|+....-
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~ 246 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT-DIINPKNGDIVEQILELTGGRGVDCVIEAVGF 246 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc-EEEcCCcchHHHHHHHHcCCCCCcEEEEccCC
Confidence 56788877642 4444445544 64 789999988888777654311 222111100 00 0 123568988853111
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+....++|+++|+++..
T Consensus 247 -----------------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 247 -----------------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred -----------------HHHHHHHHHHhhcCCEEEEE
Confidence 13566778899999998753
No 432
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=73.10 E-value=18 Score=34.08 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=49.6
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCeEEEEeCCHHH-HHHHHhcCCcceEEEc-cCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQWIGLDISQSM-LNIALEREVEGDLLLG-DMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~v~gvDis~~m-l~~a~~~~~~~~~~~~-D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
+..||=.|||. |..+..+++. |..+++++.++.. .+.+++.... .++.. +. +.+.-..+.+|+|+-...-
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~-~~i~~~~~-~~v~~~~~~~D~vid~~G~---- 252 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGAD-SFLVTTDS-QKMKEAVGTMDFIIDTVSA---- 252 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCc-EEEcCcCH-HHHHHhhCCCcEEEECCCc----
Confidence 56888888754 4444555544 7789999987654 4555433221 12111 10 0000001247888853211
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+....++|++||+++..
T Consensus 253 -------------~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 253 -------------EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred -------------HHHHHHHHHhhcCCCEEEEE
Confidence 13466778899999998863
No 433
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=72.95 E-value=24 Score=32.12 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=51.8
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC---CCCCcccEEEECCchhhh
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG---LRPGVVDGAISISAVQWL 126 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~---~~~~~fD~Vis~~~l~~l 126 (291)
+.+||=.|||. |.....++. .|..++.++.++..++.+.+... -.++... ...+. .....+|+++....-
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~-~~~i~~~-~~~~~~~~~~~~~~d~vi~~~g~--- 238 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGA-HHYIDTS-KEDVAEALQELGGAKLILATAPN--- 238 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCC-cEEecCC-CccHHHHHHhcCCCCEEEECCCc---
Confidence 56888888543 333333343 37789999999988888865332 1222111 01110 001347888853110
Q ss_pred ccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 127 CNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 127 ~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|.++..
T Consensus 239 --------------~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 239 --------------AKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred --------------hHHHHHHHHHcccCCEEEEE
Confidence 13566778899999998853
No 434
>PRK12742 oxidoreductase; Provisional
Probab=72.73 E-value=39 Score=28.78 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=40.5
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeC-CHHHHHHHHhcCCcceEEEccCCCCCC-----CCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDI-SQSMLNIALEREVEGDLLLGDMGQGLG-----LRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDi-s~~ml~~a~~~~~~~~~~~~D~~~~~~-----~~~~~fD~Vis~~~ 122 (291)
+..||=.|++.|. +...|++.|..++.+.. ++..++...... .+.++..|+.+.-. -..+.+|++|.+..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag 84 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-GATAVQTDSADRDAVIDVVRKSGALDILVVNAG 84 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-CCeEEecCCCCHHHHHHHHHHhCCCcEEEECCC
Confidence 4588888875553 33445566888877754 444443332221 24566777743210 01256899998765
Q ss_pred hh
Q 043626 123 VQ 124 (291)
Q Consensus 123 l~ 124 (291)
..
T Consensus 85 ~~ 86 (237)
T PRK12742 85 IA 86 (237)
T ss_pred CC
Confidence 43
No 435
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=72.69 E-value=18 Score=33.45 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=61.5
Q ss_pred HhCCCCCCCCCeEEEEcCCC--chhHHHHHHc-CCeEEEEeCCHHHHHHHHhcCCc--ceEEEccCCCCC-CCCC-Cccc
Q 043626 43 LLALPDDGVPRLLLDIGCGS--GLSGETLSEN-GHQWIGLDISQSMLNIALEREVE--GDLLLGDMGQGL-GLRP-GVVD 115 (291)
Q Consensus 43 lL~~~~~~~~~~VLDiGcGs--G~~~~~L~~~-g~~v~gvDis~~ml~~a~~~~~~--~~~~~~D~~~~~-~~~~-~~fD 115 (291)
...+++ +.+||=.|+.. |.+...|++. |..++++-.++.-.+.+++.... +++...|+.+.+ .+.. ..+|
T Consensus 137 ~~~l~~---g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 137 RAGLKP---GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred hcCCCC---CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCce
Confidence 334554 67899888544 4566677765 55888888888777777666543 222223332222 1222 3699
Q ss_pred EEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 116 GAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 116 ~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
+|+..-. ...+.....+|+++|+++..-.
T Consensus 214 vv~D~vG------------------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 214 VVLDTVG------------------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EEEECCC------------------HHHHHHHHHHhccCCEEEEEec
Confidence 9986422 2456678899999999997543
No 436
>PRK05693 short chain dehydrogenase; Provisional
Probab=72.51 E-value=31 Score=30.39 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=42.5
Q ss_pred eEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCC---------CCCcccEEEECC
Q 043626 54 LLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGL---------RPGVVDGAISIS 121 (291)
Q Consensus 54 ~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~---------~~~~fD~Vis~~ 121 (291)
.||=.||++|. +...|++.|+.|++++-++..++..... .+.++.+|+.+.-.. ..+.+|+||.+.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 80 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA--GFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA 80 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 57777765443 2334445689999999988766554432 356777887542110 125689999876
Q ss_pred ch
Q 043626 122 AV 123 (291)
Q Consensus 122 ~l 123 (291)
..
T Consensus 81 g~ 82 (274)
T PRK05693 81 GY 82 (274)
T ss_pred CC
Confidence 54
No 437
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=72.02 E-value=19 Score=32.65 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCCCC----CCCCeEEEEcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCC
Q 043626 35 KLSERALELLALPDD----GVPRLLLDIGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLR 110 (291)
Q Consensus 35 ~~~~~~lelL~~~~~----~~~~~VLDiGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~ 110 (291)
.+.+.+..++.-.+. ..++..+|+|+-+|.++..|.+++..|++||--+ |....- ....++-...| ++.|.
T Consensus 191 KLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma~sL~-dtg~v~h~r~D---Gfk~~ 265 (358)
T COG2933 191 KLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MAQSLM-DTGQVTHLRED---GFKFR 265 (358)
T ss_pred hHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceEEEEeccch-hhhhhh-cccceeeeecc---Ccccc
Confidence 445555555532211 1378999999999999999999999999999744 322221 11223344444 34343
Q ss_pred --CCcccEEEECCch
Q 043626 111 --PGVVDGAISISAV 123 (291)
Q Consensus 111 --~~~fD~Vis~~~l 123 (291)
....|..||.++=
T Consensus 266 P~r~~idWmVCDmVE 280 (358)
T COG2933 266 PTRSNIDWMVCDMVE 280 (358)
T ss_pred cCCCCCceEEeehhc
Confidence 3578888887553
No 438
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=71.98 E-value=43 Score=30.49 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=49.7
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+..||=.|||. |..+..++. .|..+++++.++..++.+.+.... .++...-........+.+|+|+....-
T Consensus 170 g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~-~vi~~~~~~~~~~~~~~~d~v~~~~g~------ 242 (337)
T cd05283 170 GKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGAD-EFIATKDPEAMKKAAGSLDLIIDTVSA------ 242 (337)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCc-EEecCcchhhhhhccCCceEEEECCCC------
Confidence 45666677642 333333333 378899999999888887543221 122111000001113568888843211
Q ss_pred cccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|.++..
T Consensus 243 -----------~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 243 -----------SHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred -----------cchHHHHHHHhcCCCEEEEE
Confidence 02355678889999988853
No 439
>PRK08643 acetoin reductase; Validated
Probab=71.73 E-value=49 Score=28.60 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=44.2
Q ss_pred CeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCC---------CCCCcccE
Q 043626 53 RLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLG---------LRPGVVDG 116 (291)
Q Consensus 53 ~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~---------~~~~~fD~ 116 (291)
..+|=.|+.+|. +...|++.|.+|+.++.+...++..... ...+.++.+|+.+.-. -..+..|+
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 82 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNV 82 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 467777866553 3344556789999999888665544332 2345677888854211 01256899
Q ss_pred EEECCch
Q 043626 117 AISISAV 123 (291)
Q Consensus 117 Vis~~~l 123 (291)
+|.+...
T Consensus 83 vi~~ag~ 89 (256)
T PRK08643 83 VVNNAGV 89 (256)
T ss_pred EEECCCC
Confidence 9987644
No 440
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=71.46 E-value=59 Score=29.50 Aligned_cols=118 Identities=20% Similarity=0.175 Sum_probs=65.3
Q ss_pred EEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc
Q 043626 55 LLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA 132 (291)
Q Consensus 55 VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~ 132 (291)
|-=||+|. ..+...|.+.|+.+++.|.++...+.+.+.. .. ...+..+ +.-.....|+|++.-.-.
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g--~~-~~~s~~~-~~~~~~~advVi~~vp~~-------- 70 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG--IT-ARHSLEE-LVSKLEAPRTIWVMVPAG-------- 70 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC--Ce-ecCCHHH-HHHhCCCCCEEEEEecCc--------
Confidence 44567665 2355566667899999999998777664421 11 1112111 100011247776531111
Q ss_pred CCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCC
Q 043626 133 SHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSS 193 (291)
Q Consensus 133 ~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~ 193 (291)
.....++..+...|++|. +++.+....+.....+.+.+...|. .+++-|-+.
T Consensus 71 -----~~~~~v~~~i~~~l~~g~-ivid~st~~~~~~~~~~~~~~~~g~---~~vdapV~G 122 (299)
T PRK12490 71 -----EVTESVIKDLYPLLSPGD-IVVDGGNSRYKDDLRRAEELAERGI---HYVDCGTSG 122 (299)
T ss_pred -----hHHHHHHHHHhccCCCCC-EEEECCCCCchhHHHHHHHHHHcCC---eEEeCCCCC
Confidence 125566677777777764 5555545555566667777777663 456766553
No 441
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.38 E-value=36 Score=34.37 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=57.6
Q ss_pred CeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC---CCCCCcccEEEECCchhhhc
Q 043626 53 RLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL---GLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 53 ~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~---~~~~~~fD~Vis~~~l~~l~ 127 (291)
.+|+=+|+|. |. .+..|.+.++.++.+|.+++.++.+++. ...++.+|..+.- ...-...|++|+. . .
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--g~~v~~GDat~~~~L~~agi~~A~~vv~~--~---~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--GYKVYYGDATQLELLRAAGAEKAEAIVIT--C---N 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--CCeEEEeeCCCHHHHHhcCCccCCEEEEE--e---C
Confidence 4666666654 32 2334445689999999999999988763 4578889986531 1223567877764 1 1
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
| +. ....+-...+.+.|...++...
T Consensus 474 d-------~~--~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 474 E-------PE--DTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred C-------HH--HHHHHHHHHHHHCCCCeEEEEe
Confidence 1 11 1123334456677888888765
No 442
>PRK05867 short chain dehydrogenase; Provisional
Probab=71.21 E-value=11 Score=32.73 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=47.7
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCC---------CCCccc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGL---------RPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~---------~~~~fD 115 (291)
+..+|-.|+++|. +...|++.|..|++++.++..++...... ..+.++..|+.+.-.. .-+..|
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 88 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGID 88 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 4589999987664 44556677999999999887665554332 2355677887542110 125789
Q ss_pred EEEECCchh
Q 043626 116 GAISISAVQ 124 (291)
Q Consensus 116 ~Vis~~~l~ 124 (291)
++|.+..+.
T Consensus 89 ~lv~~ag~~ 97 (253)
T PRK05867 89 IAVCNAGII 97 (253)
T ss_pred EEEECCCCC
Confidence 999876543
No 443
>PRK07890 short chain dehydrogenase; Provisional
Probab=71.21 E-value=15 Score=31.88 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=46.0
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCC---------CCCccc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGL---------RPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~---------~~~~fD 115 (291)
+.+||=.|+++|. +...|+++|+.|++++.++..++.+.... ..+.++..|+.+.-.+ .-+..|
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d 84 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVD 84 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCcc
Confidence 4578888875553 33455667899999999887665443322 2356788888542111 115689
Q ss_pred EEEECCch
Q 043626 116 GAISISAV 123 (291)
Q Consensus 116 ~Vis~~~l 123 (291)
+||.+...
T Consensus 85 ~vi~~ag~ 92 (258)
T PRK07890 85 ALVNNAFR 92 (258)
T ss_pred EEEECCcc
Confidence 99987644
No 444
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=70.81 E-value=70 Score=28.99 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=52.3
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CCe-EEEEeCCHHHHHHHHhcCCcceEEEccCCC--C-CCCC-CCcccEEEECCchh
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GHQ-WIGLDISQSMLNIALEREVEGDLLLGDMGQ--G-LGLR-PGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~~-v~gvDis~~ml~~a~~~~~~~~~~~~D~~~--~-~~~~-~~~fD~Vis~~~l~ 124 (291)
+..||-.|+|. |.....++.. |.. +++++-++...+.+.+... ..++...-.. . .... ...+|+|+....-
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~- 237 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGA-DDTINPKEEDVEKVRELTEGRGADLVIEAAGS- 237 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-CEEecCccccHHHHHHHhCCCCCCEEEECCCC-
Confidence 56888888654 4444444443 665 9999988888877754322 1222211000 0 0111 2348998854110
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|+++..
T Consensus 238 ----------------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 238 ----------------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred ----------------HHHHHHHHHHhhcCCEEEEE
Confidence 13456778999999997754
No 445
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=70.26 E-value=38 Score=33.00 Aligned_cols=119 Identities=18% Similarity=0.121 Sum_probs=68.9
Q ss_pred CCeEEEEcCC-Cchh-HHHHHHcCCeEEEEeCCHHHHHHHHh--cCCcceEEEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCG-SGLS-GETLSENGHQWIGLDISQSMLNIALE--REVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcG-sG~~-~~~L~~~g~~v~gvDis~~ml~~a~~--~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
..+|+=+|-| ||.. ...|.+.|..|+..|.++........ ....+.+.++.... +....+|+||.+..+.+-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~---~~~~~~d~vV~SPGi~~~- 82 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD---EDLAEFDLVVKSPGIPPT- 82 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccch---hccccCCEEEECCCCCCC-
Confidence 4578888877 5654 45566779999999988877222222 23445666654322 456789999988666432
Q ss_pred cccccCCchHHH--------HHHHHHHHHHhccCCcEEEEEEcC-CChHHHHHHHHHHHHcCCC
Q 043626 128 NADKASHEPRLR--------LKAFFGSLYRCLARGARAVFQIYP-ESVAQRELILGAAMRAGFA 182 (291)
Q Consensus 128 ~~~~~~~~p~~~--------l~~~l~~l~~~LkpgG~lv~~~~~-~~~~~~~~i~~~~~~aGF~ 182 (291)
+|--. +..=++-+++.. +-..++..+.. .-.....+|..++..+|+.
T Consensus 83 -------~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~ 138 (448)
T COG0771 83 -------HPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLD 138 (448)
T ss_pred -------CHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCC
Confidence 23100 001122334433 22224444433 2334677888999999996
No 446
>PRK06179 short chain dehydrogenase; Provisional
Probab=70.00 E-value=32 Score=30.09 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCchhHHHH----HHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC---------CCCCcccEEE
Q 043626 52 PRLLLDIGCGSGLSGETL----SENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG---------LRPGVVDGAI 118 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L----~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~---------~~~~~fD~Vi 118 (291)
...||-.|+. |.+|..+ ++.|..|++++-++..+.. ...+.++.+|+.+.-. ...+.+|++|
T Consensus 4 ~~~vlVtGas-g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li 78 (270)
T PRK06179 4 SKVALVTGAS-SGIGRATAEKLARAGYRVFGTSRNPARAAP----IPGVELLELDVTDDASVQAAVDEVIARAGRIDVLV 78 (270)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCCCEEEEEeCChhhccc----cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 3478888865 4445444 4568999999988754432 2346788888854211 1125689999
Q ss_pred ECCchh
Q 043626 119 SISAVQ 124 (291)
Q Consensus 119 s~~~l~ 124 (291)
.+..+.
T Consensus 79 ~~ag~~ 84 (270)
T PRK06179 79 NNAGVG 84 (270)
T ss_pred ECCCCC
Confidence 887654
No 447
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=69.85 E-value=84 Score=29.29 Aligned_cols=94 Identities=20% Similarity=0.153 Sum_probs=57.6
Q ss_pred eEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC--CCCC------CCCcccEEEECCch
Q 043626 54 LLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ--GLGL------RPGVVDGAISISAV 123 (291)
Q Consensus 54 ~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~--~~~~------~~~~fD~Vis~~~l 123 (291)
.|.=||.|+ |. ++..|++.|+.|......+..++.......+..++. ++.- .+.. .-...|+|+..-
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp-~i~lp~~l~at~Dl~~a~~~ad~iv~av-- 79 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLP-GILLPPNLKATTDLAEALDGADIIVIAV-- 79 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccC-CccCCcccccccCHHHHHhcCCEEEEEC--
Confidence 577788776 33 445556778999999988988887766544443432 2210 0000 012367777542
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
|...+..+++.+...|+++-.++...-
T Consensus 80 ------------Ps~~~r~v~~~l~~~l~~~~~iv~~sK 106 (329)
T COG0240 80 ------------PSQALREVLRQLKPLLLKDAIIVSATK 106 (329)
T ss_pred ------------ChHHHHHHHHHHhhhccCCCeEEEEec
Confidence 334467788888778888888877543
No 448
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.85 E-value=22 Score=32.12 Aligned_cols=40 Identities=25% Similarity=0.148 Sum_probs=30.3
Q ss_pred CeEEEEcCCCc--hhHHHHHHcCCeEEEEeCCHHHHHHHHhc
Q 043626 53 RLLLDIGCGSG--LSGETLSENGHQWIGLDISQSMLNIALER 92 (291)
Q Consensus 53 ~~VLDiGcGsG--~~~~~L~~~g~~v~gvDis~~ml~~a~~~ 92 (291)
.+|.=||+|+- .++..++..|+.|+.+|.++..++.+.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKER 45 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 36778898863 24455667789999999999988877654
No 449
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=69.51 E-value=4.8 Score=39.13 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCchhHHH--HHHcCCeEE------EEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 52 PRLLLDIGCGSGLSGET--LSENGHQWI------GLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~--L~~~g~~v~------gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
+.+|+=||||+=..... |...|..++ ++|..+..-+.|.+..- ...++.+. ....|+|++.-.
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF----~v~~~~Ea----~~~ADvVviLlP- 106 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF----KVGTYEEL----IPQADLVINLTP- 106 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC----ccCCHHHH----HHhCCEEEEcCC-
Confidence 67999999998222222 123356666 55655666666554421 11222121 246788886522
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+ .....+...+...|+||..|.|+
T Consensus 107 ----D---------t~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 107 ----D---------KQHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred ----h---------HHHHHHHHHHHhhCCCCCEEEec
Confidence 2 11345568999999999999985
No 450
>PRK07677 short chain dehydrogenase; Provisional
Probab=69.47 E-value=11 Score=32.73 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=45.0
Q ss_pred CeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCCC---------CCCcccE
Q 043626 53 RLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLGL---------RPGVVDG 116 (291)
Q Consensus 53 ~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~~---------~~~~fD~ 116 (291)
..+|-.|++.|. +...|++.|..+++++-+...++.+.... ..+.++.+|+.+.-.. .-+..|+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDA 81 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence 368888886663 44555677899999998877665443322 2456788887542110 1246899
Q ss_pred EEECCch
Q 043626 117 AISISAV 123 (291)
Q Consensus 117 Vis~~~l 123 (291)
+|.+...
T Consensus 82 lI~~ag~ 88 (252)
T PRK07677 82 LINNAAG 88 (252)
T ss_pred EEECCCC
Confidence 9977543
No 451
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=69.40 E-value=38 Score=33.41 Aligned_cols=122 Identities=15% Similarity=0.088 Sum_probs=71.0
Q ss_pred eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--cce-E-EEccCCCCCCCCCCcccEEEECCchhhhc
Q 043626 54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREV--EGD-L-LLGDMGQGLGLRPGVVDGAISISAVQWLC 127 (291)
Q Consensus 54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~--~~~-~-~~~D~~~~~~~~~~~fD~Vis~~~l~~l~ 127 (291)
.|==||.|. | .++..|++.|+.|++.|.+++..+...+... ... + ...++.+ +.-.-...|+|++. ++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e-~v~~l~~~dvIi~~-----v~ 81 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPED-FVLSIQKPRSVIIL-----VK 81 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHH-HHhcCCCCCEEEEE-----CC
Confidence 455566664 2 3556667789999999999987766554211 111 1 1111111 11011236888864 22
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCCC
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHSS 193 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~~ 193 (291)
++ .....++..+...|++| .+++......+.....+...+...|. .+++-|-+.
T Consensus 82 ~~--------~aV~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi---~fldapVSG 135 (493)
T PLN02350 82 AG--------APVDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGL---LYLGMGVSG 135 (493)
T ss_pred Cc--------HHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCC---eEEeCCCcC
Confidence 21 11456667777778775 56666666667777778888887775 466666653
No 452
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.28 E-value=30 Score=31.06 Aligned_cols=91 Identities=19% Similarity=0.133 Sum_probs=54.1
Q ss_pred eEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc--------c------------eE-EEccCCCCCCCC
Q 043626 54 LLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVE--------G------------DL-LLGDMGQGLGLR 110 (291)
Q Consensus 54 ~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~--------~------------~~-~~~D~~~~~~~~ 110 (291)
+|.=||+|. +.++..++..|+.|+++|+++..++.+..+... . .+ ...|. . .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~-~----~ 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDL-D----D 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-H----H
Confidence 577788885 345566777789999999999988654422110 0 11 11222 1 1
Q ss_pred CCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 111 PGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 111 ~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
....|+||-. +...+ .....+|..+...++++..++-.+
T Consensus 80 ~~~aDlVi~a-v~e~~-----------~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 80 LKDADLVIEA-ATENM-----------DLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred hccCCeeeec-ccccH-----------HHHHHHHHHHHhhCCCCcEEEECC
Confidence 2456887743 21111 113578888888888887764433
No 453
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=69.01 E-value=9.8 Score=34.92 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=58.5
Q ss_pred EeCCHHHHHHHHhcCCcceEEEccCCCCCC-CCCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEE
Q 043626 79 LDISQSMLNIALEREVEGDLLLGDMGQGLG-LRPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARA 157 (291)
Q Consensus 79 vDis~~ml~~a~~~~~~~~~~~~D~~~~~~-~~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~l 157 (291)
+.+.+...+.++.+...+.+..+|+.+.+. -+.++.|-++...+-.|+++ ..+..++.++.+-+.+|+++
T Consensus 292 ~yl~~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd---------~qln~lws~isrta~~gA~V 362 (414)
T COG5379 292 AYLDEGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTD---------GQLNSLWSEISRTAEAGARV 362 (414)
T ss_pred hhhchhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhccc---------chHHHHHHHHhhccCCCcEE
Confidence 344566666666666668888999866543 34689999999999999976 34889999999999999999
Q ss_pred EEEE
Q 043626 158 VFQI 161 (291)
Q Consensus 158 v~~~ 161 (291)
+|.+
T Consensus 363 ifRt 366 (414)
T COG5379 363 IFRT 366 (414)
T ss_pred EEec
Confidence 9964
No 454
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=68.69 E-value=29 Score=31.69 Aligned_cols=92 Identities=17% Similarity=0.074 Sum_probs=51.8
Q ss_pred CCeEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEcc-------CCCCCCCCCCcccEEEECCc
Q 043626 52 PRLLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGD-------MGQGLGLRPGVVDGAISISA 122 (291)
Q Consensus 52 ~~~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D-------~~~~~~~~~~~fD~Vis~~~ 122 (291)
.++|+=||+|. |.++..|++.|+.|+.+.-++. +...++...+....++ .... +-....||+||..--
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~vilavK 81 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRS-AEDMPPCDWVLVGLK 81 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcc-hhhcCCCCEEEEEec
Confidence 56899999986 4477777888998888887652 2222222111100011 0000 112357898875311
Q ss_pred hhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 123 VQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 123 l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
.+. +..++..+...+.+++.+++-
T Consensus 82 ~~~--------------~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 82 TTA--------------NALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred CCC--------------hHhHHHHHhhhcCCCCEEEEe
Confidence 111 346777788888888876653
No 455
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=68.51 E-value=10 Score=31.84 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=54.3
Q ss_pred EEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCc--------------------ce-EEEccCCCCCCCCC
Q 043626 55 LLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVE--------------------GD-LLLGDMGQGLGLRP 111 (291)
Q Consensus 55 VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~--------------------~~-~~~~D~~~~~~~~~ 111 (291)
|.=||+|+ | .++..++..|+.|+.+|.++..++.+.++... .. -+..|+.. .
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~-----~ 76 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEE-----A 76 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGG-----G
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHH-----H
Confidence 55678876 3 24455567799999999999999887664321 01 12334321 1
Q ss_pred CcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEEcC
Q 043626 112 GVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQIYP 163 (291)
Q Consensus 112 ~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~ 163 (291)
...|+||=. +..- -..-..+|..+.+.+.|+..+.-.+..
T Consensus 77 ~~adlViEa-i~E~-----------l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 77 VDADLVIEA-IPED-----------LELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp CTESEEEE--S-SS-----------HHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred hhhheehhh-cccc-----------HHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 256777743 1221 122578999999999999988877643
No 456
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=68.13 E-value=31 Score=31.69 Aligned_cols=92 Identities=21% Similarity=0.179 Sum_probs=56.0
Q ss_pred CeEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccC-------CCCCCCCCCcccEEEECCch
Q 043626 53 RLLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDM-------GQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 53 ~~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~-------~~~~~~~~~~fD~Vis~~~l 123 (291)
++|+=+|||. |.++..|++.|+.|+.+--++. ++..++.... +...+- ....+...+.+|+||.. +=
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~--i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~-vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLR--IEDEGGNFTTPVVAATDAEALGPADLVIVT-VK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeE--EecCCCccccccccccChhhcCCCCEEEEE-ec
Confidence 3688899996 5688888888966666665554 6655554211 111110 00112234579999853 11
Q ss_pred hhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
.|- +...++.+...+++...+++--
T Consensus 77 a~q-------------~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 77 AYQ-------------LEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred ccc-------------HHHHHHHhhhcCCCCcEEEEEe
Confidence 111 5688999999999998776644
No 457
>PLN02256 arogenate dehydrogenase
Probab=68.08 E-value=39 Score=31.00 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=51.3
Q ss_pred CCeEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
..+|.=||+|. |.++..|.+.|..|+++|.+.. .+.+... .+.. ..|..+.+ ....|+||..-
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~--gv~~-~~~~~e~~---~~~aDvVilav-------- 100 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL--GVSF-FRDPDDFC---EEHPDVVLLCT-------- 100 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHc--CCee-eCCHHHHh---hCCCCEEEEec--------
Confidence 66899999875 3355556666789999999874 2334322 1211 12221111 13468888532
Q ss_pred cccCCchHHHHHHHHHHH-HHhccCCcEEEEEEcC
Q 043626 130 DKASHEPRLRLKAFFGSL-YRCLARGARAVFQIYP 163 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~~l-~~~LkpgG~lv~~~~~ 163 (291)
|......++..+ ...++++. +++.+..
T Consensus 101 ------p~~~~~~vl~~l~~~~l~~~~-iviDv~S 128 (304)
T PLN02256 101 ------SILSTEAVLRSLPLQRLKRST-LFVDVLS 128 (304)
T ss_pred ------CHHHHHHHHHhhhhhccCCCC-EEEecCC
Confidence 222356777777 56677765 5566544
No 458
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=67.88 E-value=44 Score=28.74 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=41.0
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCC---------CCCcccEEEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGL---------RPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~---------~~~~fD~Vis 119 (291)
...+|=.|+++|. +...|++.|.++++++-+. .......+.++..|+.+.-.. ..+.+|++|.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 82 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVN 82 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3578877776543 3344556789999999876 122233466778887542110 1246899998
Q ss_pred CCch
Q 043626 120 ISAV 123 (291)
Q Consensus 120 ~~~l 123 (291)
+...
T Consensus 83 ~ag~ 86 (252)
T PRK08220 83 AAGI 86 (252)
T ss_pred CCCc
Confidence 7554
No 459
>PRK06128 oxidoreductase; Provisional
Probab=67.84 E-value=59 Score=29.21 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHH--HHH----HHHhcCCcceEEEccCCCCCC----C-----CCCc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQS--MLN----IALEREVEGDLLLGDMGQGLG----L-----RPGV 113 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~--ml~----~a~~~~~~~~~~~~D~~~~~~----~-----~~~~ 113 (291)
+..||=.|++.|. +...|++.|..|+.+..+.. .++ ........+.++.+|+.+... + .-+.
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 134 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELGG 134 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhCC
Confidence 4578888865543 33445566888887765432 111 111222345677788854210 0 1246
Q ss_pred ccEEEECCchhhhccc--cccCCchHH-------HHHHHHHHHHHhccCCcEEEEE
Q 043626 114 VDGAISISAVQWLCNA--DKASHEPRL-------RLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 114 fD~Vis~~~l~~l~~~--~~~~~~p~~-------~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
.|++|.+......... +....+... ....+++.+...|+++|.+++.
T Consensus 135 iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 135 LDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred CCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 8999988664321110 000000000 1123455666667788887763
No 460
>PLN02702 L-idonate 5-dehydrogenase
Probab=67.80 E-value=57 Score=30.11 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=51.3
Q ss_pred CCeEEEEcCCC-chhHHHHHH-cC-CeEEEEeCCHHHHHHHHhcCCcceEEEc----cCCCC---C-CCCCCcccEEEEC
Q 043626 52 PRLLLDIGCGS-GLSGETLSE-NG-HQWIGLDISQSMLNIALEREVEGDLLLG----DMGQG---L-GLRPGVVDGAISI 120 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~-~g-~~v~gvDis~~ml~~a~~~~~~~~~~~~----D~~~~---~-~~~~~~fD~Vis~ 120 (291)
+..||=+|+|. |..+..++. .| ..++++|.++..++.+.+......+... +..+. + ....+.+|+|+..
T Consensus 182 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~ 261 (364)
T PLN02702 182 ETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDC 261 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEEC
Confidence 56787787642 334444444 36 4589999998888877654322111111 11010 0 0113468888853
Q ss_pred CchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEE
Q 043626 121 SAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVF 159 (291)
Q Consensus 121 ~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~ 159 (291)
..- ...+....++|+++|+++.
T Consensus 262 ~g~-----------------~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 262 VGF-----------------NKTMSTALEATRAGGKVCL 283 (364)
T ss_pred CCC-----------------HHHHHHHHHHHhcCCEEEE
Confidence 110 1346678889999999775
No 461
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=67.60 E-value=71 Score=26.54 Aligned_cols=95 Identities=13% Similarity=0.051 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCchhHHHH-HHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCC---CCcccEEEECCchhhhc
Q 043626 52 PRLLLDIGCGSGLSGETL-SENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLR---PGVVDGAISISAVQWLC 127 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~~L-~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~---~~~fD~Vis~~~l~~l~ 127 (291)
..+|+-|||=+-.....- ...+..++.+|++...-... .+ .|+.-|......++ .++||+||+-..+ +.
T Consensus 26 ~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~----~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF--l~ 98 (162)
T PF10237_consen 26 DTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG----GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF--LS 98 (162)
T ss_pred CCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC----Cc-ceEECCCCChhhhhhhcCCCceEEEECCCC--CC
Confidence 469999999775443333 11357899999987543311 12 36666664433221 5799999987554 32
Q ss_pred cccccCCchHHHHHHHHHHHHHhccCCcEEEEEEc
Q 043626 128 NADKASHEPRLRLKAFFGSLYRCLARGARAVFQIY 162 (291)
Q Consensus 128 ~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~ 162 (291)
. .-+..+...+.-++++++.+++.+.
T Consensus 99 ~---------ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 99 E---------ECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred H---------HHHHHHHHHHHHHhCccceEEEecH
Confidence 1 1134556777777889999998873
No 462
>PRK06172 short chain dehydrogenase; Provisional
Probab=67.43 E-value=14 Score=32.06 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCCC---------CCCccc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGL---------RPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~~---------~~~~fD 115 (291)
+..||-.|+++|. +...|++.|..|+.++-++.-+..+.+. ...+.++.+|+.+.... ..+.+|
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id 86 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRLD 86 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4588999876553 3344556789999999987655443322 22467788888542110 124679
Q ss_pred EEEECCch
Q 043626 116 GAISISAV 123 (291)
Q Consensus 116 ~Vis~~~l 123 (291)
++|.+...
T Consensus 87 ~li~~ag~ 94 (253)
T PRK06172 87 YAFNNAGI 94 (253)
T ss_pred EEEECCCC
Confidence 99987654
No 463
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=67.42 E-value=32 Score=27.98 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=52.3
Q ss_pred EEEEcCCCch--hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcc-----------eEEEccCCCCCCCCCCcccEEEECC
Q 043626 55 LLDIGCGSGL--SGETLSENGHQWIGLDISQSMLNIALEREVEG-----------DLLLGDMGQGLGLRPGVVDGAISIS 121 (291)
Q Consensus 55 VLDiGcGsG~--~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~-----------~~~~~D~~~~~~~~~~~fD~Vis~~ 121 (291)
|.=||+|.+. ++..|+..|++|+....++..++...+...+. -.+..|+.+. -...|+|+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a----~~~ad~Iiia- 76 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEA----LEDADIIIIA- 76 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHH----HTT-SEEEE--
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHH----hCcccEEEec-
Confidence 5567777754 33555677899999999998877766543321 1122222111 1244666643
Q ss_pred chhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 122 AVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 122 ~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
-|...+..+++.+...|+++-.+++.
T Consensus 77 -------------vPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 77 -------------VPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -------------S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred -------------ccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 13333678999999999888777763
No 464
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=67.35 E-value=39 Score=31.31 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=53.3
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-CC-eEEEEeCCHHHHHHHHhcCCcceEEEccCCC---CC-CCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-GH-QWIGLDISQSMLNIALEREVEGDLLLGDMGQ---GL-GLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g~-~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~---~~-~~~~~~fD~Vis~~~l~ 124 (291)
+..||-.|+|. |..+..++.. |. .++++|.++..++.+.+.... .++..+-.. .+ ......+|+|+-...-
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~-~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~- 264 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGAT-HVINPKEEDLVAAIREITGGGVDYALDTTGV- 264 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc-EEecCCCcCHHHHHHHHhCCCCcEEEECCCC-
Confidence 56888887653 4444444443 65 699999999988877654321 222211100 00 0113468988853110
Q ss_pred hhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 125 WLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 125 ~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
...+..+.++|+++|+++..
T Consensus 265 ----------------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 265 ----------------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred ----------------cHHHHHHHHHhccCCEEEEe
Confidence 13466788899999998863
No 465
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=67.31 E-value=12 Score=34.72 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=41.0
Q ss_pred EEEcCCCchhHHHHHH--cCCeEEEEeCCHHHHHHHHhcCCc------ceEEEc--------cCCCCCCCCCCcccEEEE
Q 043626 56 LDIGCGSGLSGETLSE--NGHQWIGLDISQSMLNIALEREVE------GDLLLG--------DMGQGLGLRPGVVDGAIS 119 (291)
Q Consensus 56 LDiGcGsG~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~~~------~~~~~~--------D~~~~~~~~~~~fD~Vis 119 (291)
+|||.|.-.+--.+-. .++..+++|+.......|..+..+ +.+++. |... ......||.+.|
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~--~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALK--EESEIIYDFCMC 184 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhc--cCccceeeEEec
Confidence 6887666443333322 258999999999988888877643 233332 2211 122456999999
Q ss_pred CCch
Q 043626 120 ISAV 123 (291)
Q Consensus 120 ~~~l 123 (291)
+..+
T Consensus 185 NPPF 188 (419)
T KOG2912|consen 185 NPPF 188 (419)
T ss_pred CCch
Confidence 8655
No 466
>PRK06197 short chain dehydrogenase; Provisional
Probab=67.29 E-value=39 Score=30.41 Aligned_cols=73 Identities=18% Similarity=0.093 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC---------CCCCc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG---------LRPGV 113 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~---------~~~~~ 113 (291)
+..||=.|+..|. +...|+++|+.+++++-+....+.+.+.. ..+.++.+|+.+.-. -..+.
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~ 95 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYPR 95 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCCC
Confidence 4578877765443 23444566889999988876554432221 235678888854211 01246
Q ss_pred ccEEEECCchh
Q 043626 114 VDGAISISAVQ 124 (291)
Q Consensus 114 fD~Vis~~~l~ 124 (291)
+|++|.+..+.
T Consensus 96 iD~li~nAg~~ 106 (306)
T PRK06197 96 IDLLINNAGVM 106 (306)
T ss_pred CCEEEECCccc
Confidence 89999886653
No 467
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=67.08 E-value=18 Score=27.11 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=42.2
Q ss_pred EcCCCchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccccccCCchH
Q 043626 58 IGCGSGLSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKASHEPR 137 (291)
Q Consensus 58 iGcGsG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~~~~p~ 137 (291)
+-||+|..+..+++ .+-+.+.++...+++...++.+ +.-....+|+|++..-
T Consensus 4 ~~Cg~G~sTS~~~~------------ki~~~~~~~~~~~~v~~~~~~~-~~~~~~~~Diil~~Pq--------------- 55 (96)
T cd05564 4 LVCSAGMSTSILVK------------KMKKAAEKRGIDAEIEAVPESE-LEEYIDDADVVLLGPQ--------------- 55 (96)
T ss_pred EEcCCCchHHHHHH------------HHHHHHHHCCCceEEEEecHHH-HHHhcCCCCEEEEChh---------------
Confidence 46999998887754 2344555555555566655532 2222356899997522
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEE
Q 043626 138 LRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 138 ~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
+...+..+.+.+.+.+.-+..+
T Consensus 56 --v~~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 56 --VRYMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred --HHHHHHHHHHHhccCCCcEEEc
Confidence 3344566666555555544443
No 468
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.71 E-value=70 Score=27.81 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=44.1
Q ss_pred CCeEEEEcCCC-ch----hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC---------CCCCcccE
Q 043626 52 PRLLLDIGCGS-GL----SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG---------LRPGVVDG 116 (291)
Q Consensus 52 ~~~VLDiGcGs-G~----~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~---------~~~~~fD~ 116 (291)
+..+|-.|.++ +. +...|++.|..|+.++-+....+.+.+.. ..+.++..|+.+.-. -.-+.+|+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~ 86 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKIDG 86 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45788888763 33 44555567899998887654333333221 235678888864211 01267899
Q ss_pred EEECCchh
Q 043626 117 AISISAVQ 124 (291)
Q Consensus 117 Vis~~~l~ 124 (291)
+|.+..+.
T Consensus 87 lv~nAg~~ 94 (252)
T PRK06079 87 IVHAIAYA 94 (252)
T ss_pred EEEccccc
Confidence 99886553
No 469
>PRK08507 prephenate dehydrogenase; Validated
Probab=66.56 E-value=43 Score=29.87 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=49.3
Q ss_pred eEEEEcCCC--chhHHHHHHcC--CeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 54 LLLDIGCGS--GLSGETLSENG--HQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 54 ~VLDiGcGs--G~~~~~L~~~g--~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+|.=||+|. |.++..|.+.| ..++++|.++..++.+.+... ++. ..+. ..+ . ..|+||..-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~-~~~-~~~~-~~~---~-~aD~Vilav-------- 66 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL-VDE-IVSF-EEL---K-KCDVIFLAI-------- 66 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC-Ccc-cCCH-HHH---h-cCCEEEEeC--------
Confidence 466678765 33555566666 479999999988877754321 111 1121 111 1 278888642
Q ss_pred cccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
|......++..+.. ++++. +++..
T Consensus 67 ------p~~~~~~~~~~l~~-l~~~~-iv~d~ 90 (275)
T PRK08507 67 ------PVDAIIEILPKLLD-IKENT-TIIDL 90 (275)
T ss_pred ------cHHHHHHHHHHHhc-cCCCC-EEEEC
Confidence 22335567777777 77776 44444
No 470
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=66.46 E-value=25 Score=30.11 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=43.0
Q ss_pred CCeEEEEcCCCchhHH----HHHHcCCeEEEEeCCHHHHHHHH----hcCCcceEEEccCCCCCC----C-----CCCcc
Q 043626 52 PRLLLDIGCGSGLSGE----TLSENGHQWIGLDISQSMLNIAL----EREVEGDLLLGDMGQGLG----L-----RPGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~~~~----~L~~~g~~v~gvDis~~ml~~a~----~~~~~~~~~~~D~~~~~~----~-----~~~~f 114 (291)
+.+||=.|++ |.++. .|+++|+.|++++-++..+..+. .....+.++.+|+.+... + ..+.+
T Consensus 6 ~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 84 (251)
T PRK12826 6 GRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL 84 (251)
T ss_pred CCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4578877764 44444 44566899999998865443332 222346778888854211 0 11368
Q ss_pred cEEEECCch
Q 043626 115 DGAISISAV 123 (291)
Q Consensus 115 D~Vis~~~l 123 (291)
|+||.+...
T Consensus 85 d~vi~~ag~ 93 (251)
T PRK12826 85 DILVANAGI 93 (251)
T ss_pred CEEEECCCC
Confidence 998887544
No 471
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=66.41 E-value=61 Score=32.25 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=44.6
Q ss_pred CeEEEEcCCC-ch-hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCC---CCCCcccEEEE
Q 043626 53 RLLLDIGCGS-GL-SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLG---LRPGVVDGAIS 119 (291)
Q Consensus 53 ~~VLDiGcGs-G~-~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~---~~~~~fD~Vis 119 (291)
.+|+=+|||. |. ....|.+.|+.++.+|.+++.++.+++ .....+.+|..+.-. ..-+..|.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 4677777765 32 344445568999999999999988875 356789999865311 22357886664
No 472
>PRK06398 aldose dehydrogenase; Validated
Probab=66.33 E-value=28 Score=30.42 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=42.1
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCC---------CCCcccEEEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGL---------RPGVVDGAIS 119 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~---------~~~~fD~Vis 119 (291)
+..||-.|+..|. +...|++.|++|+.++.+..- ...+.++.+|+.+.... ..+.+|++|.
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~-------~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~ 78 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS-------YNDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN 78 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc-------cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4589999976653 445566778999999876532 12456778888542110 1246899998
Q ss_pred CCch
Q 043626 120 ISAV 123 (291)
Q Consensus 120 ~~~l 123 (291)
+..+
T Consensus 79 ~Ag~ 82 (258)
T PRK06398 79 NAGI 82 (258)
T ss_pred CCCC
Confidence 7654
No 473
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.30 E-value=72 Score=28.67 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=55.0
Q ss_pred CeEEEEcCCCc--hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--------cce------------E-EEccCCCCCCC
Q 043626 53 RLLLDIGCGSG--LSGETLSENGHQWIGLDISQSMLNIALEREV--------EGD------------L-LLGDMGQGLGL 109 (291)
Q Consensus 53 ~~VLDiGcGsG--~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~--------~~~------------~-~~~D~~~~~~~ 109 (291)
.+|.=||+|+- .++..++..|+.|+.+|.++..++.+.++.. .+. + ...|+ +.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~--- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-ED--- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HH---
Confidence 36788898863 2556667779999999999998877543211 000 1 11222 11
Q ss_pred CCCcccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEEE
Q 043626 110 RPGVVDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQI 161 (291)
Q Consensus 110 ~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~ 161 (291)
-...|+||.. +.. .......+|..+...++++..++..+
T Consensus 81 -~~~aD~Viea-vpe-----------~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 81 -LADCDLVIEA-ATE-----------DETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred -hcCCCEEEEc-CcC-----------CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 2356887754 111 11114567788888899888766443
No 474
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=65.91 E-value=26 Score=33.87 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=56.1
Q ss_pred CCeEEEEcCCC-chhH-HHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 52 PRLLLDIGCGS-GLSG-ETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~-~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+.+|+=+|+|. |... ..+...|.+|+.+|+++.....+... ...+ .++.+. ...+|+||....-
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--G~~v--~~l~ea----l~~aDVVI~aTG~------ 277 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--GFRV--MTMEEA----AELGDIFVTATGN------ 277 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--CCEe--cCHHHH----HhCCCEEEECCCC------
Confidence 67999999985 3222 23334578999999998765444332 1121 122111 1357998864211
Q ss_pred cccCCchHHHHHHHHH-HHHHhccCCcEEEEEEcCCChHHHHHHH
Q 043626 130 DKASHEPRLRLKAFFG-SLYRCLARGARAVFQIYPESVAQRELIL 173 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~-~l~~~LkpgG~lv~~~~~~~~~~~~~i~ 173 (291)
..++. .....+++|++++..-.....-+...+.
T Consensus 278 -----------~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~ 311 (425)
T PRK05476 278 -----------KDVITAEHMEAMKDGAILANIGHFDNEIDVAALE 311 (425)
T ss_pred -----------HHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHh
Confidence 13443 5778899999888765444434444443
No 475
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.87 E-value=23 Score=30.51 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=55.0
Q ss_pred hccccccchhHHHHHHHHHH----HHHHhCCCCCCCCCeEEEEcCC-CchhHHHHHHcCCeEEEEeCCHHHHHHHHhcCC
Q 043626 20 ARKYTSSSRIIDIQAKLSER----ALELLALPDDGVPRLLLDIGCG-SGLSGETLSENGHQWIGLDISQSMLNIALEREV 94 (291)
Q Consensus 20 a~~Y~~~~~~~~iq~~~~~~----~lelL~~~~~~~~~~VLDiGcG-sG~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~ 94 (291)
....++..++.++..++... +...+.-+. +..||-+|.= +|..+..+....+.|+.+||.|.|-.....+
T Consensus 12 vkT~~s~~~v~Dvv~eI~~~K~~ai~~~~~~~E---~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~-- 86 (254)
T COG4017 12 VKTIDSKTRVVDVVNEIAKKKYQAIRDFLEGEE---FKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNN-- 86 (254)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhhhhhcccC---cceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCC--
Confidence 34455555555555444432 222223333 6789999865 5777666666679999999999885443221
Q ss_pred cceEEEccCCCCCCCCCCcccEEEECCch
Q 043626 95 EGDLLLGDMGQGLGLRPGVVDGAISISAV 123 (291)
Q Consensus 95 ~~~~~~~D~~~~~~~~~~~fD~Vis~~~l 123 (291)
++|. ..+.+..+.+|+||-.--+
T Consensus 87 -v~Fr-----~~~~~~~G~~DlivDlTGl 109 (254)
T COG4017 87 -VKFR-----NLLKFIRGEVDLIVDLTGL 109 (254)
T ss_pred -ccHh-----hhcCCCCCceeEEEecccc
Confidence 2222 2344557788888865443
No 476
>PRK06181 short chain dehydrogenase; Provisional
Probab=65.87 E-value=38 Score=29.42 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=41.5
Q ss_pred eEEEEcCCCchhHH----HHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCCC---------CCCcccE
Q 043626 54 LLLDIGCGSGLSGE----TLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGL---------RPGVVDG 116 (291)
Q Consensus 54 ~VLDiGcGsG~~~~----~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~~---------~~~~fD~ 116 (291)
.||-.|+.. .++. .|++.|+.|++++.++..++...+. .....++.+|+.+.-.. ..+..|+
T Consensus 3 ~vlVtGasg-~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 81 (263)
T PRK06181 3 VVIITGASE-GIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDI 81 (263)
T ss_pred EEEEecCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 677777544 4444 3456689999999987655433322 22356777887542110 0146799
Q ss_pred EEECCch
Q 043626 117 AISISAV 123 (291)
Q Consensus 117 Vis~~~l 123 (291)
||.+...
T Consensus 82 vi~~ag~ 88 (263)
T PRK06181 82 LVNNAGI 88 (263)
T ss_pred EEECCCc
Confidence 9987543
No 477
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=65.78 E-value=11 Score=35.54 Aligned_cols=42 Identities=24% Similarity=0.182 Sum_probs=28.5
Q ss_pred CCeEEEEcCCC-chhHHHHH-HcCCeEEEEeCCHHHHHHHHhcC
Q 043626 52 PRLLLDIGCGS-GLSGETLS-ENGHQWIGLDISQSMLNIALERE 93 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~-~~g~~v~gvDis~~ml~~a~~~~ 93 (291)
+..|+=||+|. |......+ ..|..|+.+|.++.-++.+....
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence 46799998874 44333333 45788999999988776665443
No 478
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=65.71 E-value=21 Score=31.34 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=47.9
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC----CcceEEEccCCCCCC----C-----CCCccc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE----VEGDLLLGDMGQGLG----L-----RPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~----~~~~~~~~D~~~~~~----~-----~~~~fD 115 (291)
+..+|-.|++.|. +...|++.|+.++.++-++..++.+.... ..+.++.+|+.+... + ..+.+|
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 89 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVID 89 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 4578888887764 44556677999999998887665444332 246678888854211 0 125689
Q ss_pred EEEECCch
Q 043626 116 GAISISAV 123 (291)
Q Consensus 116 ~Vis~~~l 123 (291)
++|.+...
T Consensus 90 ~li~~ag~ 97 (265)
T PRK07097 90 ILVNNAGI 97 (265)
T ss_pred EEEECCCC
Confidence 99987654
No 479
>PRK06484 short chain dehydrogenase; Validated
Probab=65.08 E-value=38 Score=33.03 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=46.5
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCC----C-----CCCcccEEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLG----L-----RPGVVDGAI 118 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~----~-----~~~~fD~Vi 118 (291)
+..+|=.|++.|. +...|++.|..|+.++.++..++...+.. .....+..|+.+.-. + ..+.+|++|
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li 348 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVLV 348 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3567877776653 34555667899999999887776655433 234567788754211 1 125789999
Q ss_pred ECCch
Q 043626 119 SISAV 123 (291)
Q Consensus 119 s~~~l 123 (291)
.+..+
T Consensus 349 ~nAg~ 353 (520)
T PRK06484 349 NNAGI 353 (520)
T ss_pred ECCCC
Confidence 87654
No 480
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=64.98 E-value=28 Score=29.93 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=43.6
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHH--HHHHHHhcCCcceEEEccCCCCCCC---------CCCcccEE
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQS--MLNIALEREVEGDLLLGDMGQGLGL---------RPGVVDGA 117 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~--ml~~a~~~~~~~~~~~~D~~~~~~~---------~~~~fD~V 117 (291)
+.+||=.|++.|. +...|++.|+.|++++-++. ..+...+....+.++..|+.+.-.. ..+..|++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~l 84 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDIL 84 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4688989986653 34555567899999987652 2222222223467788888542111 12468999
Q ss_pred EECCch
Q 043626 118 ISISAV 123 (291)
Q Consensus 118 is~~~l 123 (291)
|.+...
T Consensus 85 i~~ag~ 90 (248)
T TIGR01832 85 VNNAGI 90 (248)
T ss_pred EECCCC
Confidence 987544
No 481
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=64.95 E-value=48 Score=26.33 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=39.7
Q ss_pred CCeEEEEcCCC--chhHHHHHHcC-CeEEEEeCCHHHHHHHHhcCCc--ceEEEccCCCCCCCCCCcccEEEECCchh
Q 043626 52 PRLLLDIGCGS--GLSGETLSENG-HQWIGLDISQSMLNIALEREVE--GDLLLGDMGQGLGLRPGVVDGAISISAVQ 124 (291)
Q Consensus 52 ~~~VLDiGcGs--G~~~~~L~~~g-~~v~gvDis~~ml~~a~~~~~~--~~~~~~D~~~~~~~~~~~fD~Vis~~~l~ 124 (291)
+.+|+-+|||. ......|...+ ..++.+|.++...+...+.... ......|..+. ....|+||+.....
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Dvvi~~~~~~ 92 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL----LAEADLIINTTPVG 92 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc----cccCCEEEeCcCCC
Confidence 57899999963 12334444554 7899999998766554433221 11122232111 35789999864443
No 482
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.85 E-value=17 Score=33.79 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=31.7
Q ss_pred CCeEEEEcCCC-chhHHHHHHc-C-CeEEEEeCCHHHHHHHHhcC
Q 043626 52 PRLLLDIGCGS-GLSGETLSEN-G-HQWIGLDISQSMLNIALERE 93 (291)
Q Consensus 52 ~~~VLDiGcGs-G~~~~~L~~~-g-~~v~gvDis~~ml~~a~~~~ 93 (291)
++++.-+|+|. |+....-++. | ..++|||++++-.+.|++-.
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fG 237 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFG 237 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcC
Confidence 67888888876 5544444443 5 79999999999999998753
No 483
>PRK12937 short chain dehydrogenase; Provisional
Probab=64.81 E-value=88 Score=26.61 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=39.9
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCC-HHHHH----HHHhcCCcceEEEccCCCCCC----C-----CCCcc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDIS-QSMLN----IALEREVEGDLLLGDMGQGLG----L-----RPGVV 114 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis-~~ml~----~a~~~~~~~~~~~~D~~~~~~----~-----~~~~f 114 (291)
+..||=.|++.|. +...|+++|+.++.+..+ +...+ ........+.++..|+.+.-. + ..+..
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGRI 84 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4578888885443 334455668887776543 22222 222222346778888754211 0 12468
Q ss_pred cEEEECCch
Q 043626 115 DGAISISAV 123 (291)
Q Consensus 115 D~Vis~~~l 123 (291)
|++|.+...
T Consensus 85 d~vi~~ag~ 93 (245)
T PRK12937 85 DVLVNNAGV 93 (245)
T ss_pred CEEEECCCC
Confidence 999987654
No 484
>PRK08655 prephenate dehydrogenase; Provisional
Probab=64.45 E-value=62 Score=31.32 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=53.7
Q ss_pred eEEEEc-CCC-c-hhHHHHHHcCCeEEEEeCCHHHH-HHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhccc
Q 043626 54 LLLDIG-CGS-G-LSGETLSENGHQWIGLDISQSML-NIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNA 129 (291)
Q Consensus 54 ~VLDiG-cGs-G-~~~~~L~~~g~~v~gvDis~~ml-~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~ 129 (291)
+|+=|| +|. | .++..|.+.|+.|+++|.++... +.+.+.. +. ...+..+ .....|+||..-..+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~g--v~-~~~~~~e----~~~~aDvVIlavp~~----- 69 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELG--VE-YANDNID----AAKDADIVIISVPIN----- 69 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcC--Ce-eccCHHH----HhccCCEEEEecCHH-----
Confidence 466676 553 2 24455556688999999988764 3343321 11 1112111 123568888643322
Q ss_pred cccCCchHHHHHHHHHHHHHhccCCcEEEEEEcCCChHHHHHHHH
Q 043626 130 DKASHEPRLRLKAFFGSLYRCLARGARAVFQIYPESVAQRELILG 174 (291)
Q Consensus 130 ~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~ 174 (291)
....++..+...+++|. +++.+........+.+..
T Consensus 70 ---------~~~~vl~~l~~~l~~~~-iViDvsSvK~~~~~~l~~ 104 (437)
T PRK08655 70 ---------VTEDVIKEVAPHVKEGS-LLMDVTSVKERPVEAMEE 104 (437)
T ss_pred ---------HHHHHHHHHHhhCCCCC-EEEEcccccHHHHHHHHH
Confidence 24577788888888876 455543323333444333
No 485
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.18 E-value=23 Score=30.40 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=44.5
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhc----CCcceEEEccCCCCCCC---------CCCccc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALER----EVEGDLLLGDMGQGLGL---------RPGVVD 115 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~----~~~~~~~~~D~~~~~~~---------~~~~fD 115 (291)
+..+|-.|++.|. +...|++.|..++.+|.++..++.+... ...+.++..|+.+.-.. ..+.+|
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 84 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLN 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4588988875443 2233456688999999998765544332 23456778887542110 014689
Q ss_pred EEEECCch
Q 043626 116 GAISISAV 123 (291)
Q Consensus 116 ~Vis~~~l 123 (291)
+||.+...
T Consensus 85 ~vi~~ag~ 92 (253)
T PRK08217 85 GLINNAGI 92 (253)
T ss_pred EEEECCCc
Confidence 99987553
No 486
>PRK08177 short chain dehydrogenase; Provisional
Probab=64.02 E-value=90 Score=26.43 Aligned_cols=69 Identities=19% Similarity=0.040 Sum_probs=42.4
Q ss_pred eEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCC-------CCCCCcccEEEECCch
Q 043626 54 LLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGL-------GLRPGVVDGAISISAV 123 (291)
Q Consensus 54 ~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~-------~~~~~~fD~Vis~~~l 123 (291)
.||=.|+..|. ++..|++.|..|++++.++.-++.+.. ...+.++..|+.+.- .+..+.+|+||.+...
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA-LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh-ccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence 57777765443 445566678999999988765443322 234566777875421 1223468999987543
No 487
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=64.00 E-value=49 Score=29.94 Aligned_cols=97 Identities=20% Similarity=0.260 Sum_probs=55.0
Q ss_pred HHhCCCCCCCCCeEEEEcCCC-chhHHHHHH--cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCC-CC----CCCCCCc
Q 043626 42 ELLALPDDGVPRLLLDIGCGS-GLSGETLSE--NGHQWIGLDISQSMLNIALEREVEGDLLLGDMG-QG----LGLRPGV 113 (291)
Q Consensus 42 elL~~~~~~~~~~VLDiGcGs-G~~~~~L~~--~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~-~~----~~~~~~~ 113 (291)
+...+.. +.+||=.|||. |..+..++. .|..+++++-+++..+.+.+... +.+...-. .. +.-..+.
T Consensus 156 ~~~~~~~---g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~v~~~~~~ 230 (338)
T PRK09422 156 KVSGIKP---GQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGA--DLTINSKRVEDVAKIIQEKTGG 230 (338)
T ss_pred HhcCCCC---CCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCC--cEEecccccccHHHHHHHhcCC
Confidence 3444444 66888888643 445555555 27899999999999888855332 22211100 00 0000124
Q ss_pred ccEEEECCchhhhccccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 114 VDGAISISAVQWLCNADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 114 fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
+|.++.... -...+..+.++|+++|.++..
T Consensus 231 ~d~vi~~~~-----------------~~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 231 AHAAVVTAV-----------------AKAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred CcEEEEeCC-----------------CHHHHHHHHHhccCCCEEEEE
Confidence 674432111 114567888899999998853
No 488
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.92 E-value=50 Score=29.96 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=29.7
Q ss_pred CeEEEEcCCC--chhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 043626 53 RLLLDIGCGS--GLSGETLSENGHQWIGLDISQSMLNIALE 91 (291)
Q Consensus 53 ~~VLDiGcGs--G~~~~~L~~~g~~v~gvDis~~ml~~a~~ 91 (291)
.+|.=||+|. +.++..|+..|+.|+++|.++..++.+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 3677888886 23556666778999999999988877665
No 489
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=63.77 E-value=1.1e+02 Score=31.47 Aligned_cols=157 Identities=17% Similarity=0.051 Sum_probs=75.6
Q ss_pred HHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC--C--------eEEEE-----eCCHH-HHHHH---HhcCCcce
Q 043626 37 SERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG--H--------QWIGL-----DISQS-MLNIA---LEREVEGD 97 (291)
Q Consensus 37 ~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g--~--------~v~gv-----Dis~~-ml~~a---~~~~~~~~ 97 (291)
.+-++..+.++. .-.|-.|=|+|..+..+.... . .+.+. -.+|. ++... ..+..+.+
T Consensus 312 lRsIL~~~~i~~----~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~ 387 (675)
T PF14314_consen 312 LRSILKNLNIKY----RDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLD 387 (675)
T ss_pred HHHHHHhcCCCc----ceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecch
Confidence 345666667764 356999999999999988753 1 12222 22221 11111 11111110
Q ss_pred ---EEEccCCCCCC---C------CCCcccEEEECCchhhhccccccCCchHHHHHHH-HHHHHHhccCCcEEEEEEcCC
Q 043626 98 ---LLLGDMGQGLG---L------RPGVVDGAISISAVQWLCNADKASHEPRLRLKAF-FGSLYRCLARGARAVFQIYPE 164 (291)
Q Consensus 98 ---~~~~D~~~~~~---~------~~~~fD~Vis~~~l~~l~~~~~~~~~p~~~l~~~-l~~l~~~LkpgG~lv~~~~~~ 164 (291)
=...|+.+... | ..-++|+||+-+= .........+... -..+..+|.++|.+++.+|..
T Consensus 388 ~~W~~pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmE--------V~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt 459 (675)
T PF14314_consen 388 TCWEHPSDLSDPETWKYFVSLKKQHNLSIDLIVMDME--------VRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLT 459 (675)
T ss_pred hhhcCccccCCccHHHHHHHHHhhcCCcccEEEEece--------ecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHh
Confidence 01123322110 1 1237899996532 2222233334333 344567889999999998875
Q ss_pred ChHHHH-HHHHHHHHcCCCCcEEEeCCCCCCCCcEEEEEeeCC
Q 043626 165 SVAQRE-LILGAAMRAGFAGGVVVDYPHSSKSRKEFLVLTCGP 206 (291)
Q Consensus 165 ~~~~~~-~i~~~~~~aGF~~~~~~~~p~~~~~~~~~l~l~~g~ 206 (291)
.....+ .+...+-+. |.....+.-..+........+++.+.
T Consensus 460 ~l~~~~~~il~~lg~~-F~~V~l~qT~~SSs~TSEVYlv~~~~ 501 (675)
T PF14314_consen 460 RLLSPDYNILDLLGRY-FKSVELVQTQFSSSFTSEVYLVFQKL 501 (675)
T ss_pred hhhcchhhHHHHHHhh-cCceEEEECCCCCCCceEEEEEEecc
Confidence 432222 233333333 77633333333333333333333444
No 490
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=63.40 E-value=15 Score=29.42 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=23.2
Q ss_pred EEcCCCc--hhHHHHH--Hc--CCeEEEEeCCHHHHHHHHhc
Q 043626 57 DIGCGSG--LSGETLS--EN--GHQWIGLDISQSMLNIALER 92 (291)
Q Consensus 57 DiGcGsG--~~~~~L~--~~--g~~v~gvDis~~ml~~a~~~ 92 (291)
|||++.| .....+. .. +..++++|.++..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 23 48899999999988877666
No 491
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=63.34 E-value=52 Score=29.60 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=60.6
Q ss_pred EEEEcCCCc--hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcccccc
Q 043626 55 LLDIGCGSG--LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCNADKA 132 (291)
Q Consensus 55 VLDiGcGsG--~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~~~~~ 132 (291)
|-=||+|.- .++..|++.|+.|+++|.++..++.+.+.... ...+..+ .....|+|+..-...
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~---~~~~~~~----~~~~aDivi~~vp~~-------- 66 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAV---TAETARQ----VTEQADVIFTMVPDS-------- 66 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCc---ccCCHHH----HHhcCCEEEEecCCH--------
Confidence 344666652 24455667789999999999887776543211 1111100 013468888642110
Q ss_pred CCchHHHHHHHH---HHHHHhccCCcEEEEEEcCCChHHHHHHHHHHHHcCCCCcEEEeCCCC
Q 043626 133 SHEPRLRLKAFF---GSLYRCLARGARAVFQIYPESVAQRELILGAAMRAGFAGGVVVDYPHS 192 (291)
Q Consensus 133 ~~~p~~~l~~~l---~~l~~~LkpgG~lv~~~~~~~~~~~~~i~~~~~~aGF~~~~~~~~p~~ 192 (291)
.....++ ..+...+++|. +++......+.....+.+.+...|. .+++-|.+
T Consensus 67 -----~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~---~~~~~pv~ 120 (291)
T TIGR01505 67 -----PQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGI---DYLDAPVS 120 (291)
T ss_pred -----HHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCC---CEEecCCC
Confidence 0122332 23445566654 4445544455566677777777654 34455544
No 492
>PRK12744 short chain dehydrogenase; Provisional
Probab=63.29 E-value=73 Score=27.57 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=39.6
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCC----HHHHHHHH----hcCCcceEEEccCCCCCCC---------CC
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDIS----QSMLNIAL----EREVEGDLLLGDMGQGLGL---------RP 111 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis----~~ml~~a~----~~~~~~~~~~~D~~~~~~~---------~~ 111 (291)
+..||=.|++.|. +...|++.|.+++.++.+ ...++... .....+.++..|+.+.-.. ..
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 87 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAAF 87 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHhh
Confidence 4578888865553 334444568776666532 22222221 1123466788888542110 12
Q ss_pred CcccEEEECCch
Q 043626 112 GVVDGAISISAV 123 (291)
Q Consensus 112 ~~fD~Vis~~~l 123 (291)
+..|++|.+...
T Consensus 88 ~~id~li~~ag~ 99 (257)
T PRK12744 88 GRPDIAINTVGK 99 (257)
T ss_pred CCCCEEEECCcc
Confidence 568999987665
No 493
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=63.21 E-value=1.1e+02 Score=27.04 Aligned_cols=86 Identities=17% Similarity=0.107 Sum_probs=52.5
Q ss_pred CCeEEEEcCC--CchhHHHHHH-cCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCCCcccEEEECCchhhhcc
Q 043626 52 PRLLLDIGCG--SGLSGETLSE-NGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRPGVVDGAISISAVQWLCN 128 (291)
Q Consensus 52 ~~~VLDiGcG--sG~~~~~L~~-~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~~~fD~Vis~~~l~~l~~ 128 (291)
+..||=.|++ .|..+..++. .|..+++++.++..++.+++.... ..+. +. .. +..+.+|+++....-
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~-~~~~-~~-~~--~~~~~~d~vl~~~g~----- 202 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAA-EVVV-GG-SE--LSGAPVDLVVDSVGG----- 202 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCc-EEEe-cc-cc--ccCCCceEEEECCCc-----
Confidence 5688888874 2334333443 478899999989888888763222 2211 11 11 122468888853111
Q ss_pred ccccCCchHHHHHHHHHHHHHhccCCcEEEEE
Q 043626 129 ADKASHEPRLRLKAFFGSLYRCLARGARAVFQ 160 (291)
Q Consensus 129 ~~~~~~~p~~~l~~~l~~l~~~LkpgG~lv~~ 160 (291)
..+....++|+++|+++..
T Consensus 203 -------------~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 203 -------------PQLARALELLAPGGTVVSV 221 (305)
T ss_pred -------------HHHHHHHHHhcCCCEEEEE
Confidence 2356788999999998854
No 494
>PRK07062 short chain dehydrogenase; Provisional
Probab=63.19 E-value=20 Score=31.32 Aligned_cols=72 Identities=22% Similarity=0.080 Sum_probs=46.3
Q ss_pred CCeEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC------CcceEEEccCCCCCC---------CCCCc
Q 043626 52 PRLLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE------VEGDLLLGDMGQGLG---------LRPGV 113 (291)
Q Consensus 52 ~~~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~------~~~~~~~~D~~~~~~---------~~~~~ 113 (291)
+..+|=.|++.|. +...|++.|+.|+.++.++.-++.+.+.. ..+.++..|+.+.-. -..+.
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 87 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGG 87 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 4588989977664 44555567899999999887665443321 134567778755211 01256
Q ss_pred ccEEEECCch
Q 043626 114 VDGAISISAV 123 (291)
Q Consensus 114 fD~Vis~~~l 123 (291)
+|++|.+...
T Consensus 88 id~li~~Ag~ 97 (265)
T PRK07062 88 VDMLVNNAGQ 97 (265)
T ss_pred CCEEEECCCC
Confidence 8999987654
No 495
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=63.07 E-value=46 Score=35.97 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=43.3
Q ss_pred CCeEEEEcCCC-ch-hHHHHHHcC-C-------------eEEEEeCCHHHHHHHHhcCCcceEEEccCCCCCCCCC--Cc
Q 043626 52 PRLLLDIGCGS-GL-SGETLSENG-H-------------QWIGLDISQSMLNIALEREVEGDLLLGDMGQGLGLRP--GV 113 (291)
Q Consensus 52 ~~~VLDiGcGs-G~-~~~~L~~~g-~-------------~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~~~~~~~--~~ 113 (291)
..+||=||||- |. ....|++.. . .++.+|+++...+.+.+..+.+..+..|+.+.-.+.. ..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 45899999973 43 344454432 2 3888999988777766665555666666533111111 34
Q ss_pred ccEEEECC
Q 043626 114 VDGAISIS 121 (291)
Q Consensus 114 fD~Vis~~ 121 (291)
.|+||+..
T Consensus 649 ~DaVIsal 656 (1042)
T PLN02819 649 VDVVISLL 656 (1042)
T ss_pred CCEEEECC
Confidence 89999763
No 496
>PRK06101 short chain dehydrogenase; Provisional
Probab=62.96 E-value=33 Score=29.54 Aligned_cols=51 Identities=22% Similarity=0.117 Sum_probs=34.8
Q ss_pred eEEEEcCCCchhH----HHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEccCCC
Q 043626 54 LLLDIGCGSGLSG----ETLSENGHQWIGLDISQSMLNIALEREVEGDLLLGDMGQ 105 (291)
Q Consensus 54 ~VLDiGcGsG~~~----~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~D~~~ 105 (291)
.||=.|+. |.+| ..|+++|..|++++-++..++........+.++.+|+.+
T Consensus 3 ~vlItGas-~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~ 57 (240)
T PRK06101 3 AVLITGAT-SGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTD 57 (240)
T ss_pred EEEEEcCC-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCC
Confidence 56766764 4444 444566899999999988776555444456778888854
No 497
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=62.95 E-value=87 Score=28.19 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=28.9
Q ss_pred CeEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 043626 53 RLLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALE 91 (291)
Q Consensus 53 ~~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~ 91 (291)
.+|.=||+|. | .+...++..|+.|+++|.++..++.+.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 45 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLD 45 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 3677788875 3 3555666778999999999998876543
No 498
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=62.62 E-value=23 Score=30.66 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=43.1
Q ss_pred eEEEEcCCCch---hHHHHHHcCCeEEEEeCCHHHHHHHHhcC-CcceEEEccCCCCCCC---------CCCcccEEEEC
Q 043626 54 LLLDIGCGSGL---SGETLSENGHQWIGLDISQSMLNIALERE-VEGDLLLGDMGQGLGL---------RPGVVDGAISI 120 (291)
Q Consensus 54 ~VLDiGcGsG~---~~~~L~~~g~~v~gvDis~~ml~~a~~~~-~~~~~~~~D~~~~~~~---------~~~~fD~Vis~ 120 (291)
.||=.|++.|. +...|+++|+.|++++.++..++...... ..+.++.+|+.+.-.. .-+..|+||.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ 81 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN 81 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 46666655443 33444566899999999987665544332 3467788888542111 11468999977
Q ss_pred Cch
Q 043626 121 SAV 123 (291)
Q Consensus 121 ~~l 123 (291)
...
T Consensus 82 ag~ 84 (248)
T PRK10538 82 AGL 84 (248)
T ss_pred CCc
Confidence 543
No 499
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=62.60 E-value=13 Score=32.82 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCCCCCCeEEEEcCCCchhHHHHHHcC-CeEEEEeCCHHH
Q 043626 35 KLSERALELLALPDDGVPRLLLDIGCGSGLSGETLSENG-HQWIGLDISQSM 85 (291)
Q Consensus 35 ~~~~~~lelL~~~~~~~~~~VLDiGcGsG~~~~~L~~~g-~~v~gvDis~~m 85 (291)
.+++.++.....-. ...|.+||.|.|.++..+.+.+ .....|+++...
T Consensus 37 ~lT~KIvK~A~~~~---~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RF 85 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLT---NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRF 85 (326)
T ss_pred HHHHHHHHhccccc---cceeEEecCCCCchhHHHHhcchhheeeeeecccc
Confidence 44555555544333 5689999999999999999987 566777766643
No 500
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=62.51 E-value=65 Score=29.47 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=53.3
Q ss_pred eEEEEcCCC-c-hhHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcceEEEc-cCC------CCCC-CCCCcccEEEECCch
Q 043626 54 LLLDIGCGS-G-LSGETLSENGHQWIGLDISQSMLNIALEREVEGDLLLG-DMG------QGLG-LRPGVVDGAISISAV 123 (291)
Q Consensus 54 ~VLDiGcGs-G-~~~~~L~~~g~~v~gvDis~~ml~~a~~~~~~~~~~~~-D~~------~~~~-~~~~~fD~Vis~~~l 123 (291)
+|.=||||. | .++..|++.|+.|+.++.++..++..+.......++.. .+. .... ...+.+|+||.. +
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia-v- 79 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA-V- 79 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE-e-
Confidence 577789886 3 36677778899999999988776655553211111100 000 0000 002467877743 1
Q ss_pred hhhccccccCCchHHHHHHHHHHHHH-hccCCcEEEE
Q 043626 124 QWLCNADKASHEPRLRLKAFFGSLYR-CLARGARAVF 159 (291)
Q Consensus 124 ~~l~~~~~~~~~p~~~l~~~l~~l~~-~LkpgG~lv~ 159 (291)
|...+..+++.+.. .+.++..+++
T Consensus 80 ------------ks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 80 ------------PTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred ------------CHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 33336678888887 7777776554
Done!