BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043627
(504 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native)
pdb|2B2H|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (as)
pdb|2B2I|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (Ma)
pdb|2B2J|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (xe)
Length = 399
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 116/439 (26%), Positives = 174/439 (39%), Gaps = 66/439 (15%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++L S LV M G AG VR KN +N++ + + L + +G++ +FG
Sbjct: 5 NVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFG 64
Query: 107 SPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSF 166
+ +G IG + L D F +YQ ER + ++++ S+
Sbjct: 65 NDISGIIGGLNYALLSGVKG-EDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSAL 123
Query: 167 LTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGP 226
FVY +HW W GW + G +DFAG VVH+ G A L A+ G
Sbjct: 124 WLTFVYAPFAHWLWGG-GWLAKL---------GALDFAGGMVVHISSGFAALAVAMTIGK 173
Query: 227 RIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFL----------TILKSYGE 276
R G + S + HS L ++G+ LLWFGW+GFN GS L + +
Sbjct: 174 RAGFEEYS-----IEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAA 228
Query: 277 SGGYYGQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGC 336
G+ W IG + G + + +G + G AAIT
Sbjct: 229 VAGFV--WMVIGW----------------------IKGKPGSLGIVSGAIAGLAAITPAA 264
Query: 337 SVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAR--- 393
V+ AI+ G VA V K K D+ L+A +HG G WG + G+ A
Sbjct: 265 GFVDVKGAIVIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEV 324
Query: 394 EAYVGEVYPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINLLRI 453
Y G ++ G P + V A +G LR+
Sbjct: 325 NGYAGLLF-GNPQLLVSQLIAVASTTAYAFLVTLILAKA-VDAAVG-----------LRV 371
Query: 454 STDDEMAGMDLTRHGGFAY 472
S+ +E G+DL++H AY
Sbjct: 372 SSQEEYVGLDLSQHEEVAY 390
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 109/435 (25%), Positives = 176/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSAACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 109/435 (25%), Positives = 176/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 109/435 (25%), Positives = 176/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 19 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 78
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 79 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 138
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 139 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 188
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 189 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 232
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 233 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 290
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 291 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 346
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 347 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 398
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 399 EREGLDVNSHGENAY 413
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 109/435 (25%), Positives = 176/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 109/435 (25%), Positives = 176/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 175/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSAACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+G N G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGANAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 175/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VV + IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVEINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 175/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+G N G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGANAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 175/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VV + IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVFINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 175/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + + G CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVFGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 175/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VV + IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVAINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/435 (24%), Positives = 175/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + + G CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 107/435 (24%), Positives = 174/435 (40%), Gaps = 49/435 (11%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N ++ +A ++F G A+ G +R KN ++++ + A + + ++G++ AFG
Sbjct: 10 NAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFG 69
Query: 107 SPSNGFIGRHFFGLRDVP-----SPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L+++ + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VV + IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHMVWGG----------GLLASHGALDFAGGTVVAINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ +V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPMVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEV 400
A+I G VA L G L L+ DDP + + G CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSL---- 337
Query: 401 YPGRPGRPYGLFMGGGGRXXXXXXXXXXXXXGWVTATMGPLFYGLKKINL---LRISTDD 457
G G G+ MG G V F G K +L LR+ +
Sbjct: 338 --GGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA------FIGYKLADLTVGLRVPEEQ 389
Query: 458 EMAGMDLTRHGGFAY 472
E G+D+ HG AY
Sbjct: 390 EREGLDVNSHGENAY 404
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 146/355 (41%), Gaps = 34/355 (9%)
Query: 47 NTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFG 106
N + +A ++F G A+ G +R KN ++ + + A + + ++G++ A G
Sbjct: 10 NAFXXICTALVLFXTIPGIALFYGGLIRGKNVLSXLTQVTVTFALVCILWVVYGYSLASG 69
Query: 107 SPSNGFIGRHFFGLRD-----VPSPLTDYSFFLYQWXXXXXXXXXXXXXXXERTQFVAYL 161
+N F ++ L++ V + Y +Q ER +F A L
Sbjct: 70 EGNNFFGNINWLXLKNIELTAVXGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVL 129
Query: 162 IYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221
I+ Y ++H W LL G +DFAG VVH+ IAGL GA
Sbjct: 130 IFVVVWLTLSYIPIAHXVWGG----------GLLASHGALDFAGGTVVHINAAIAGLVGA 179
Query: 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYY 281
+ G R+G ++ + H+ V G+ +L+ GW+GFN G S G
Sbjct: 180 YLIGKRVGFGKEA-----FKPHNLPXVFTGTAILYIGWFGFNAG-----------SAGTA 223
Query: 282 GQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEP 341
+ +A+ F + L G +++ C+G + G +T C +
Sbjct: 224 NEIAAL--AFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 342 WAAIICGFVAAWV-LIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREA 395
A+I G VA L G L L+ DDP + +HG CG G + TG+FA +
Sbjct: 282 GGALIIGVVAGLAGLWGVTXLKRLLRVDDPCDVFGVHGVCGIVGCIXTGIFAASS 336
>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
Length = 490
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 21/179 (11%)
Query: 200 VIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGW 259
V D GS +H G GL I R +QS S ++G+ LW W
Sbjct: 180 VKDAGGSMTIHTFGAYFGLTVTRILYRR--NLEQSKERQNSVYQSDLFAMIGTLFLWMYW 237
Query: 260 YGFNPGSFLTILKSYGESGGYYGQWSAIGRXXXXXXXXXXXXXXXXXFSKRLLVGHWNVI 319
FN + + +G+S +AI K+ G +++
Sbjct: 238 PSFN-----SAISYHGDSQ----HRAAINTYCSLAACVLTSVAISSALHKK---GKLDMV 285
Query: 320 DVCNGLL-GGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLH 377
+ N L GG A T+ ++ P+ A+I GFV + + LG Y P ++LH
Sbjct: 286 HIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGII----STLG--FVYLTPFLESRLH 338
>pdb|1X3Z|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 347 CGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGG-CGTWGILFT 388
CG V + C + +Y+DP++ + G CG W LFT
Sbjct: 150 CGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFT 192
>pdb|3BHS|A Chain A, Nitrosomonas Europaea Rh50 And Mechanism Of Conduction By
Rhesus Protein Family Of Channels
Length = 406
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 314 GHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFV 350
G +++D+ N L G AI S C++V P A + G +
Sbjct: 231 GKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLL 267
>pdb|1X3W|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 347 CGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGG-CGTWGILFT 388
CG V + C + +Y+DP++ + G CG W LFT
Sbjct: 150 CGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFT 192
>pdb|3B9W|A Chain A, The 1.3 A Resolution Structure Of Nitrosomonas Europaea
Rh50 And Mechanistic Implications For Nh3 Transport By
Rhesus Family Proteins
Length = 407
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 314 GHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFV 350
G +++D+ N L G AI S C++V P A + G +
Sbjct: 232 GKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLL 268
>pdb|3B9Y|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
pdb|3B9Z|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
Complexed With Carbon Dioxide
Length = 388
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 314 GHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFV 350
G +++D+ N L G AI S C++V P A + G +
Sbjct: 226 GKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLL 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,561,373
Number of Sequences: 62578
Number of extensions: 592466
Number of successful extensions: 1431
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 34
length of query: 504
length of database: 14,973,337
effective HSP length: 103
effective length of query: 401
effective length of database: 8,527,803
effective search space: 3419649003
effective search space used: 3419649003
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)