Query 043627
Match_columns 504
No_of_seqs 159 out of 1367
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0682 Ammonia permease [Inor 100.0 9E-114 2E-118 897.1 29.4 430 24-477 8-447 (500)
2 COG0004 AmtB Ammonia permease 100.0 6E-110 1E-114 859.9 33.0 397 44-477 2-407 (409)
3 TIGR00836 amt ammonium transpo 100.0 7E-105 2E-109 836.7 33.3 392 48-472 1-403 (403)
4 TIGR03644 marine_trans_1 proba 100.0 5E-105 1E-109 836.6 31.6 386 45-473 2-402 (404)
5 PRK10666 ammonium transporter; 100.0 6E-104 1E-108 832.2 31.5 394 42-473 26-427 (428)
6 PF00909 Ammonium_transp: Ammo 100.0 3.7E-97 8E-102 781.4 11.1 394 49-472 1-399 (399)
7 KOG3796 Ammonium transporter R 100.0 7.4E-36 1.6E-40 300.8 19.3 290 132-458 118-422 (442)
8 PF00909 Ammonium_transp: Ammo 67.8 50 0.0011 35.4 11.1 141 43-227 185-328 (399)
9 TIGR00836 amt ammonium transpo 59.6 1E+02 0.0022 33.4 11.6 138 45-226 193-332 (403)
10 PF01148 CTP_transf_1: Cytidyl 44.5 14 0.0003 36.2 1.9 64 315-378 160-236 (259)
11 TIGR03644 marine_trans_1 proba 43.0 2.5E+02 0.0054 30.4 11.3 138 45-224 202-343 (404)
12 PLN02594 phosphatidate cytidyl 41.5 8.8 0.00019 40.4 0.0 38 341-378 235-276 (342)
13 PRK11624 cdsA CDP-diglyceride 36.6 22 0.00049 36.4 2.1 80 299-378 162-258 (285)
14 PF11085 YqhR: Conserved membr 34.9 93 0.002 29.8 5.7 30 420-449 67-96 (173)
15 COG1079 Uncharacterized ABC-ty 31.5 76 0.0016 33.1 4.9 119 338-467 59-189 (304)
16 KOG2493 Na+/Pi symporter [Inor 30.5 8E+02 0.017 27.4 12.9 71 289-359 103-184 (512)
17 COG4120 ABC-type uncharacteriz 29.1 15 0.00031 37.5 -0.7 54 314-369 31-87 (293)
18 PF11023 DUF2614: Protein of u 28.3 1.6E+02 0.0035 26.3 5.7 44 59-102 17-63 (114)
19 COG0575 CdsA CDP-diglyceride s 27.7 29 0.00062 35.1 1.1 76 303-378 148-241 (265)
20 PF06570 DUF1129: Protein of u 25.7 47 0.001 32.2 2.2 113 243-369 76-205 (206)
21 COG3965 Predicted Co/Zn/Cd cat 22.1 3.4E+02 0.0074 28.0 7.4 126 216-370 64-198 (314)
22 PF14074 DUF4257: Protein of u 21.9 15 0.00033 30.8 -1.7 58 296-353 4-74 (82)
23 PRK02935 hypothetical protein; 20.2 2.6E+02 0.0056 24.7 5.3 43 60-102 19-64 (110)
No 1
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-114 Score=897.08 Aligned_cols=430 Identities=52% Similarity=0.876 Sum_probs=390.8
Q ss_pred hhhhhhhhhhhhhhccccc-cccchHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043627 24 AASYLCSRFDTISKTLSDT-SFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFA 102 (504)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~ 102 (504)
.+++.+++....+++..+. .+.-|+.|++.++++||+|||||+|||+|+||+||++|+|+||++|.+++.++||++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~y~~dn~~~l~sss~lvF~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~Gys 87 (500)
T KOG0682|consen 8 TATYIRGAGGNVLTKFTPNAYDLDNTAWLLSSSFLVFTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYS 87 (500)
T ss_pred ccccccccccccccccCcchhcCCchhhHHHHHHHHHHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 3455555554444444444 344678899999999999999999999999999999999999999999999999999999
Q ss_pred hcccCC-CCccccccc-cccccCCCC------CchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhccc
Q 043627 103 FAFGSP-SNGFIGRHF-FGLRDVPSP------LTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPI 174 (504)
Q Consensus 103 lafG~~-~~~fiG~~~-f~~~~~~~~------~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~ 174 (504)
|+||+. .|+|||... |++++.+.+ .+++.+++||++||+++++|++|+++||+|+++|++|+++|.++||||
T Consensus 88 lAFg~~~~n~FiG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~ 167 (500)
T KOG0682|consen 88 LAFGDSPSNGFIGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCP 167 (500)
T ss_pred eeccCCCCCCceeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccc
Confidence 999987 799999965 777766422 248999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCccCCCCCCccccCCceeeecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHH
Q 043627 175 VSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFL 254 (504)
Q Consensus 175 ~ahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~l 254 (504)
++||+|+++||++ ++|++|||||++||++||++||++++++|||++||++ +..++||||+++++||++|
T Consensus 168 ~a~W~W~~~Gw~~---------~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~--~~~~~~~hsv~~v~LGt~l 236 (500)
T KOG0682|consen 168 VAHWVWSPNGWLY---------KLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFG--KAIALRPHSVTLVVLGTFL 236 (500)
T ss_pred cceeeecCCceee---------ecceeeccCCceeEecccHHHHHHHHHhCCccCcccc--cccccCCCchhHHHHHHHH
Confidence 9999999999998 5899999999999999999999999999999999843 4467899999999999999
Q ss_pred HHHHhhhcCccchhhhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeecc
Q 043627 255 LWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITS 334 (504)
Q Consensus 255 Lw~GW~gFN~Gs~l~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa 334 (504)
|||||++||+||.+.++ -+ . .+|+++||+||++.|++||++++|+++|||++..+|||+|+|||||||
T Consensus 237 LWfGWl~FN~GS~~~i~--------~~-~---~~~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~ 304 (500)
T KOG0682|consen 237 LWFGWLGFNGGSFYAIN--------LR-S---WARAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITP 304 (500)
T ss_pred HHHHHHccCCccccccc--------ch-h---HHHHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcC
Confidence 99999999999998872 11 1 139999999999999999999999999999999999999999999999
Q ss_pred CCCCcChhHHHHHHHhhhHhhhhhhccccccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccc
Q 043627 335 GCSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMG 414 (504)
Q Consensus 335 ~~~~v~p~~A~iiG~iag~v~~~~~~l~~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~g 414 (504)
+|++++||+|+++|++++++|++..++++|+|||||+|++++||+||+||+|++|+|+.+++....++.. .++.|++++
T Consensus 305 gc~~v~pWaAiviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~-~~~~G~~~~ 383 (500)
T KOG0682|consen 305 GCGVVEPWAAIVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTI-ARISGLWMG 383 (500)
T ss_pred CCcccCcHHHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCc-cCCCceeec
Confidence 9999999999999999999999999999999999999999999999999999999999987554433321 356799999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCChHHHhcCCcccccccccCCCCCC
Q 043627 415 GGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINL-LRISTDDEMAGMDLTRHGGFAYAYHDE 477 (504)
Q Consensus 415 g~~~ql~~Ql~g~~vi~~w~~~~t~ii~~il~~~~~-LRv~~e~E~~GlD~~~hg~~ay~~~~~ 477 (504)
++++||++|+++++++.+|+++++.++++++||+++ |||++|||+.|+|..||||.+|++.+.
T Consensus 384 ~~~kqLg~Qla~i~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~~ 447 (500)
T KOG0682|consen 384 HGFKQLGYQLAGILAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHES 447 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhhc
Confidence 999999999999999999999999999999999999 999999999999999999999998774
No 2
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-110 Score=859.87 Aligned_cols=397 Identities=37% Similarity=0.642 Sum_probs=366.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCcccccc-cccccc
Q 043627 44 FAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRH-FFGLRD 122 (504)
Q Consensus 44 ~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~-~f~~~~ 122 (504)
+..|++|+++|++|||+|||||+|+|+|++|+||++|+++||++++++++++|+++||+++||++.++|||+. .+++++
T Consensus 2 ~~~d~~wml~sa~LV~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~~~~~ 81 (409)
T COG0004 2 DSGDTAWMLLSAALVLLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQFFLNG 81 (409)
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHHhccC
Confidence 5689999999999999999999999999999999999999999999999999999999999998778999984 334443
Q ss_pred CC-------CCCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccc
Q 043627 123 VP-------SPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLL 195 (504)
Q Consensus 123 ~~-------~~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~ 195 (504)
.. +..+++.+++||++||++|++|++|+++||+||++|++|+++|+++||||++||+|+++|||.
T Consensus 82 ~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~-------- 153 (409)
T COG0004 82 LGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLA-------- 153 (409)
T ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHH--------
Confidence 21 123689999999999999999999999999999999999999999999999999999888998
Q ss_pred cCCceeeecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccC
Q 043627 196 FGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYG 275 (504)
Q Consensus 196 ~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~ 275 (504)
++|++|||||+|||..+|++||+++++||||+++ ++.++||||++++++|+.|||+||||||+||++..
T Consensus 154 -~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~-----~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~----- 222 (409)
T COG0004 154 -LLGALDFAGGTVVHINAGFAALAAALVLGKRIGG-----KPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAA----- 222 (409)
T ss_pred -hcCceecCCCceEEechhHHHHHHHHHeecccCC-----CCCCCCCCchhHHHHHHHHHHHHHccCCccchhhh-----
Confidence 5899999999999999999999999999999973 34578999999999999999999999999999987
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHHhhhHhh
Q 043627 276 ESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVL 355 (504)
Q Consensus 276 ~~~~~~~~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v~ 355 (504)
| ..+..+++||++|+++|+++|++++++++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|
T Consensus 223 ---~-----~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~ 294 (409)
T COG0004 223 ---N-----GVAALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVIC 294 (409)
T ss_pred ---h-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHH
Confidence 2 35788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc-cccccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 043627 356 IGCNK-LGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWV 434 (504)
Q Consensus 356 ~~~~~-l~~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w~ 434 (504)
+...+ +++|+|+|||+|++++||+||+||++++|+|++++. . ...|.++ ++++|++.|+++++++..|+
T Consensus 295 ~~a~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~-----~----~~~G~~~-~~~~~l~~Q~~~v~~~~~~~ 364 (409)
T COG0004 295 YFAVKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIFAAPAV-----G----GGGGLFY-GGGVQLGVQLLGVLVTIVYA 364 (409)
T ss_pred HHHHHHHHHhcCCCCcccceeccchhhHHHHHHHHHhcCccc-----c----ccCcccc-ccHHHHHHHHHHHHHHHHHH
Confidence 77765 777799999999999999999999999999999863 0 1125555 68999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCChHHHhcCCcccccccccCCCCCC
Q 043627 435 TATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDE 477 (504)
Q Consensus 435 ~~~t~ii~~il~~~~~LRv~~e~E~~GlD~~~hg~~ay~~~~~ 477 (504)
+++|+++++++|++.+|||++|||++|||.+||||++|+++..
T Consensus 365 ~v~t~ii~~vl~~~~gLRvs~eeE~~GlD~~~Hge~aY~~~~~ 407 (409)
T COG0004 365 FVVTFIILKVLKLIIGLRVSEEEELEGLDISEHGESAYSEEEA 407 (409)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHhhCCChHHhcccccccccc
Confidence 9999999999999999999999999999999999999997543
No 3
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=7e-105 Score=836.70 Aligned_cols=392 Identities=49% Similarity=0.853 Sum_probs=362.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccC--CCCccccccccccccCCC
Q 043627 48 TTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGS--PSNGFIGRHFFGLRDVPS 125 (504)
Q Consensus 48 ~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~--~~~~fiG~~~f~~~~~~~ 125 (504)
++|+++|++|||+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||+ +.++|||+..+++.+.+.
T Consensus 1 ~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~~~~~~ 80 (403)
T TIGR00836 1 TAWLLIAAALVFFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGLKNFLY 80 (403)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhhccCCc
Confidence 579999999999999999999999999999999999999999999999999999999997 557899986555543321
Q ss_pred --------CCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccC
Q 043627 126 --------PLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFG 197 (504)
Q Consensus 126 --------~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~ 197 (504)
..+++++++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+++|||+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~~GwL~---------~ 151 (403)
T TIGR00836 81 PGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLY---------K 151 (403)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecCCchhh---------c
Confidence 23568899999999999999999999999999999999999999999999999999999998 5
Q ss_pred CceeeecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccCCC
Q 043627 198 SGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGES 277 (504)
Q Consensus 198 lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~~~ 277 (504)
+|++|||||++||++||++||+++++||||++|++ +++++||||++++++|+++||+||||||+||++..
T Consensus 152 lG~~DfAG~~vVH~~gG~~~L~~a~~LGpR~~r~~---~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~------- 221 (403)
T TIGR00836 152 LGVLDFAGGGVVHIVGGVAGLAAALVLGPRIGRFP---RPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAA------- 221 (403)
T ss_pred cCcchhcCceeEecchhHHHHHHHHHhcCCCCCCc---CcCCCCCCCHHHHHHHHHHHHHHHhcccchhhccc-------
Confidence 89999999999999999999999999999999985 34578999999999999999999999999998754
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHHhhhHhhhh
Q 043627 278 GGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIG 357 (504)
Q Consensus 278 ~~~~~~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v~~~ 357 (504)
+ ..+.++++||++|+|+|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|+++|+++|++|+.
T Consensus 222 -~-----~~~~~a~~nT~lA~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~ 295 (403)
T TIGR00836 222 -N-----GTAAYAAVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYL 295 (403)
T ss_pred -c-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 2578999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhc-cccccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHH
Q 043627 358 CNK-LGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTA 436 (504)
Q Consensus 358 ~~~-l~~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w~~~ 436 (504)
..+ +++|+|||||||++++||+||+||++++|+|++++.. . ...|.+++++++|++.|++|++++.+|+++
T Consensus 296 ~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~----~----~~~g~~~~~~~~~l~~Ql~g~~~~~~~s~~ 367 (403)
T TIGR00836 296 AVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVG----G----VGTGGLLGGNGKQLGVQLIGIAAIIAWAFV 367 (403)
T ss_pred HHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccccc----c----ccCCccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 665 8889999999999999999999999999999987521 1 112567778899999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCChHHHhcCCcccccccccC
Q 043627 437 TMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAY 472 (504)
Q Consensus 437 ~t~ii~~il~~~~~LRv~~e~E~~GlD~~~hg~~ay 472 (504)
.++++++++|++.+||+++|||+.|+|.+||||++|
T Consensus 368 ~~~ii~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 368 VTFIILKILDKTIGLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred HHHHHHHHHHhcccccCCHHHHHhCCChhhhCcccC
Confidence 999999999999999999999999999999999998
No 4
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=5.3e-105 Score=836.58 Aligned_cols=386 Identities=37% Similarity=0.625 Sum_probs=354.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCC---Cccccccccccc
Q 043627 45 AVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPS---NGFIGRHFFGLR 121 (504)
Q Consensus 45 ~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~---~~fiG~~~f~~~ 121 (504)
++|+.|+++|++|||+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++. ++++|. |...
T Consensus 2 ~~d~~w~l~~~~LV~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~~~~~g~~g~--f~~~ 79 (404)
T TIGR03644 2 ALDTFYFLISGALVMWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGGIFLGGILGS--FLLG 79 (404)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCcchh--hhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999752 345543 2111
Q ss_pred cC--------C---C-CCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCC
Q 043627 122 DV--------P---S-PLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPT 189 (504)
Q Consensus 122 ~~--------~---~-~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~ 189 (504)
.. + + ..+.+.+|+||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W~-~GwL~-- 156 (404)
T TIGR03644 80 ADNPVGDLIAGFEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTWG-GGWLD-- 156 (404)
T ss_pred ccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhheeC-chHHh--
Confidence 10 0 1 11457889999999999999999999999999999999999999999999999997 79997
Q ss_pred CCCccccCCceeeecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhh
Q 043627 190 RSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLT 269 (504)
Q Consensus 190 ~~~~~~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~ 269 (504)
++|++|||||++||++||++||+++++||||++||+++++++++||||++++++|+++||+||||||+||++.
T Consensus 157 -------~lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l~ 229 (404)
T TIGR03644 157 -------DLGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLA 229 (404)
T ss_pred -------hcCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 5899999999999999999999999999999999988888788999999999999999999999999999987
Q ss_pred hhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHH
Q 043627 270 ILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGF 349 (504)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~ 349 (504)
.+. .+.....+++++||++|+++|+++|++++++++||+|+..++||+|||||+|||+|++++||+|++||+
T Consensus 230 ~~~--------~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~ 301 (404)
T TIGR03644 230 LSD--------VADANAVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGA 301 (404)
T ss_pred ccc--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHH
Confidence 621 112234689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhhccccccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHH
Q 043627 350 VAAWVLIGCNKLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILV 429 (504)
Q Consensus 350 iag~v~~~~~~l~~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~v 429 (504)
++|++|+...++++|+|||||||++++||+||+||++++|+|+.+ +|++.|++|+++
T Consensus 302 iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~-----------------------~~l~~Ql~g~~~ 358 (404)
T TIGR03644 302 VGGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGD-----------------------ASFGAQLIGAAT 358 (404)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccc-----------------------hHHHHHHHHHHH
Confidence 999999888888889999999999999999999999999999631 389999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCChHHHhcCCcccccccccCC
Q 043627 430 IAGWVTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYA 473 (504)
Q Consensus 430 i~~w~~~~t~ii~~il~~~~~LRv~~e~E~~GlD~~~hg~~ay~ 473 (504)
+.+|+++.++++++++|++.+|||++|||++|+|.+||||++|+
T Consensus 359 ~~~~~~~~s~~~~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay~ 402 (404)
T TIGR03644 359 IFAWVFVTSLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYP 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCHHHHHcCCCHHHhCcccCC
Confidence 99999999999999999999999999999999999999999995
No 5
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=6.5e-104 Score=832.19 Aligned_cols=394 Identities=28% Similarity=0.506 Sum_probs=354.9
Q ss_pred ccccchHHHHHHHHHHHHHHH-HHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCcccccc-ccc
Q 043627 42 TSFAVNTTYLLFSAYLVFAMQ-LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRH-FFG 119 (504)
Q Consensus 42 ~~~~~d~~w~l~~~~lV~~M~-~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~-~f~ 119 (504)
..++.|++|+++|++|||+|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++|+|+. +++
T Consensus 26 ~~~~~d~~w~l~~~~lV~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~~-~~~iG~~~~~~ 104 (428)
T PRK10666 26 VADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEG-NAFFGNFNWLM 104 (428)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCCC-CCcccChHHhh
Confidence 456789999999999999998 9999999999999999999999999999999999999999999974 6899974 444
Q ss_pred cccCCC-----CCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCcc
Q 043627 120 LRDVPS-----PLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNL 194 (504)
Q Consensus 120 ~~~~~~-----~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~ 194 (504)
+.+.+. +.+++.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~vahWvW~-~GwL~------- 176 (428)
T PRK10666 105 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWG-GGLLA------- 176 (428)
T ss_pred hcCCCcccccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhhhheeC-chhHh-------
Confidence 443221 12467899999999999999999999999999999999999999999999999998 99997
Q ss_pred ccCCceeeecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhcc
Q 043627 195 LFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSY 274 (504)
Q Consensus 195 ~~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~ 274 (504)
++|++|||||++||++||++||++++++|||+++. + ++++|||++++++|+++||+||||||+||++..
T Consensus 177 --~lG~~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~-~----~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~---- 245 (428)
T PRK10666 177 --SDGALDFAGGTVVHINAAVAGLVGAYLLGKRVGFG-K----EAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAA---- 245 (428)
T ss_pred --hcchhhhcccchhHHhHHHHHHHHHHHhcccCCCC-C----CCCCCCCHHHHHHHHHHHHHHHHhccchhhccc----
Confidence 58999999999999999999999999999999852 2 357999999999999999999999999998755
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHHhhhHh
Q 043627 275 GESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWV 354 (504)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v 354 (504)
| ..+.++++||++|+++|+++|++++++++||+|+..+|||+|||||+|||+|++++||+|++||+++|++
T Consensus 246 ----~-----~~a~~a~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v 316 (428)
T PRK10666 246 ----N-----EIAALAFVNTVVATAAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLA 316 (428)
T ss_pred ----c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHH
Confidence 1 2578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh-ccccccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 043627 355 LIGCN-KLGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGW 433 (504)
Q Consensus 355 ~~~~~-~l~~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w 433 (504)
|+... ++++|+|||||+|++++||+||+||++++|+|++++.....| ..|.. .++|++.|++|++++++|
T Consensus 317 ~~~~~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~~~~~~~~------~~g~~---~~~ql~~Ql~g~~~~~~~ 387 (428)
T PRK10666 317 GLWGVTMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAASSLGGVGY------AEGVT---MGHQVLVQLESIAITIVW 387 (428)
T ss_pred HHHHHHHHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhchhccCccc------cCccc---cHHHHHHHHHHHHHHHHH
Confidence 97654 566679999999999999999999999999999875210001 11211 247999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCChHHHhcCCcccccccccCC
Q 043627 434 VTATMGPLFYGLKKINLLRISTDDEMAGMDLTRHGGFAYA 473 (504)
Q Consensus 434 ~~~~t~ii~~il~~~~~LRv~~e~E~~GlD~~~hg~~ay~ 473 (504)
+++.++++++++|++.+||+++|||++|+|.+||||++|+
T Consensus 388 ~~~~t~ii~~il~~~~~lRvs~e~E~~GlD~~~hg~~ay~ 427 (428)
T PRK10666 388 SGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYN 427 (428)
T ss_pred HHHHHHHHHHHHHhcccCcCCHHHHHhCCChhHhCccccC
Confidence 9999999999999999999999999999999999999996
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=3.7e-97 Score=781.44 Aligned_cols=394 Identities=45% Similarity=0.798 Sum_probs=339.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC--CCccccccccccccCCC-
Q 043627 49 TYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSP--SNGFIGRHFFGLRDVPS- 125 (504)
Q Consensus 49 ~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~--~~~fiG~~~f~~~~~~~- 125 (504)
+|+++|+++|++||+||+++|+|.+|+||++|+++||++|+++++++||++||+++||++ .++++|+..+.....+.
T Consensus 1 ~w~l~~~~lv~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~~~~~~~~~g~~~~~~~~~~~~ 80 (399)
T PF00909_consen 1 AWLLLCAFLVFLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGKRYGFSGFIGNLGFSAFGFQWA 80 (399)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHSTT-HHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecCCcccCceeeccccccccchhc
Confidence 699999999999999999999999999999999999999999999999999999999986 56788874332211111
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCcee-eec
Q 043627 126 PLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVI-DFA 204 (504)
Q Consensus 126 ~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~-Dfa 204 (504)
..++..+++||++||+++++|++|+++||+|+.+|++|+++|+.++|||++||+|+++|||. ++|++ ||+
T Consensus 81 ~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~Gwl~---------~~g~~~Dfa 151 (399)
T PF00909_consen 81 NIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGENGWLA---------QLGFLIDFA 151 (399)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHCHHHH---------HCCHH--TT
T ss_pred cccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecchhhc---------cCccCCCCc
Confidence 12356789999999999999999999999999999999999999999999999999999998 47888 999
Q ss_pred CCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccCCCCCCCCch
Q 043627 205 GSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQW 284 (504)
Q Consensus 205 Gs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~~~~~~~~~~ 284 (504)
||++||++||++||++++++|||++|++ ++++++|+||++++++|+++||+||+|||+||++..++
T Consensus 152 G~~vVH~~gG~~gL~~a~~lg~R~~~~~--~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~------------ 217 (399)
T PF00909_consen 152 GSGVVHLFGGVFGLAAAIVLGPRRGRFD--GKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANG------------ 217 (399)
T ss_dssp -TTTTHHHHHHHHHHHHHHH--CTTTTG--TTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSH------------
T ss_pred cceeeehhhhHHHHhhheeeCCCCCccc--ccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCC------------
Confidence 9999999999999999999999999997 56788999999999999999999999999999987621
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHHhhhHhhhhhh-cccc
Q 043627 285 SAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCN-KLGE 363 (504)
Q Consensus 285 ~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~-~l~~ 363 (504)
....|+++||++|+++|++++++++++++||+|+..++||+|||||||||+|++++||+|+++|+++|.+++... ++++
T Consensus 218 ~~~~~~~~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~ 297 (399)
T PF00909_consen 218 RAWLRAAVNTLLAAAAGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLK 297 (399)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhHHHHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccc
Confidence 122259999999999999999999999999999999999999999999999999999999999999999987766 4999
Q ss_pred ccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043627 364 KLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFY 443 (504)
Q Consensus 364 kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w~~~~t~ii~~ 443 (504)
|+|||||||++++||+||+||++++|+|+.++.. +. +..+.++.++++|++.|++++++++.|+++.++++++
T Consensus 298 ~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~---~~----~~~~~~~~~~~~~l~~Ql~g~~~~~~~~~~~s~i~~~ 370 (399)
T PF00909_consen 298 RLKIDDPVGAFAVHGVGGIWGTILTGLFASPEVN---YS----DGYGGLFYGNGRQLGIQLLGIVVILAWSFVVSYIIFK 370 (399)
T ss_dssp HHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHC---SS-----SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEeccccceEeeeeccHHHHHHHHHHHhccccc---cc----cccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998632 11 1224344455699999999999999999999999999
Q ss_pred HHhhcccCCCChHHHhcCCcccccccccC
Q 043627 444 GLKKINLLRISTDDEMAGMDLTRHGGFAY 472 (504)
Q Consensus 444 il~~~~~LRv~~e~E~~GlD~~~hg~~ay 472 (504)
++|++.+|||++|+|++|+|.+||||++|
T Consensus 371 ~l~~~~~LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 371 ILKKFGGLRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp HHHHHT-SB--HHHHHH-HHHHHHS--SB
T ss_pred HHHhccccCCCHHHHhhCCCHHHhCcCcC
Confidence 99999999999999999999999999998
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=7.4e-36 Score=300.78 Aligned_cols=290 Identities=23% Similarity=0.232 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceeeecCCchHhH
Q 043627 132 FFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHM 211 (504)
Q Consensus 132 ~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~vVH~ 211 (504)
+-+..+.||+.++.|..||+.+|.++.++++++++-.+ ++...-|-+-+ .+.+.|..||..||.
T Consensus 118 e~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~-~~~~~e~v~~n---------------~~~v~d~g~smtih~ 181 (442)
T KOG3796|consen 118 ESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVT-AFGINEMVISN---------------IFNVNDHGGSMTIHA 181 (442)
T ss_pred HHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHH-HHHHHHHHHHH---------------hccccccCCceEEEe
Confidence 34667899999999999999999999999999986543 44443333322 378899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccCCCCCCCCchhhHHHHH
Q 043627 212 VGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTA 291 (504)
Q Consensus 212 ~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~~~~~~~~~~~~~~~~~ 291 (504)
+|+++||++++++.||..|..++ + +.-..||..++++||++||+.|++||+. +.. .++...|++
T Consensus 182 FgAYFGLavA~~l~k~~~~~~~~-~-~gs~y~sdLfAMIGtlFLWmfWPSFNsa--l~~------------~~~~r~rAi 245 (442)
T KOG3796|consen 182 FGAYFGLAVAWCLYKPNLEGTTE-N-EGSAYHSDLFAMIGTLFLWMFWPSFNSA--LAR------------SGDARHRAI 245 (442)
T ss_pred hhhhhhhhHhhhccCcccccccc-c-cCceecchHHHHHHHHHHHHhccccchh--hhc------------CchhhHHHH
Confidence 99999999999999887664332 1 2335699999999999999999999964 322 123568999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhCCceeeccccceeeeeeeeccCCC-CcChhHHHHHHHhhhHhhhhh-----hcccc
Q 043627 292 VTTTLAGCTAALTTLFSKRL--LVGHWNVIDVCNGLLGGFAAITSGCS-VVEPWAAIICGFVAAWVLIGC-----NKLGE 363 (504)
Q Consensus 292 ~NT~la~a~g~l~~~~~~~~--~~~k~~~~~~~nG~LaGLVaITa~~~-~v~p~~A~iiG~iag~v~~~~-----~~l~~ 363 (504)
+||++|.|++.+|++.++-+ .+||.|+++++|..|||.|||..+|+ ..+||.|++||+|||.+++.. .++.+
T Consensus 246 ~NTy~slAa~tvTtf~~Sslv~~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~~ 325 (442)
T KOG3796|consen 246 FNTYLSLAASTVTTFAVSSLVHPQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLER 325 (442)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhcc
Confidence 99999999999999999887 47999999999999999999999999 579999999999999998554 35678
Q ss_pred ccccccccccccccccchhhHHHHHHhhcccc----ccc---ccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHH
Q 043627 364 KLKYDDPLEAAQLHGGCGTWGILFTGLFAREA----YVG---EVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTA 436 (504)
Q Consensus 364 kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~----~~~---~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w~~~ 436 (504)
|+||+|+|++.+.||++|++|.++...++.-. |.. ..|+ .. ...| -+....|-..|+.|+.+++..+.+
T Consensus 326 ~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e~yg~~l~~ifp-~~-~gng--~~~~~sQa~~Ql~gl~~~l~~A~~ 401 (442)
T KOG3796|consen 326 KLGIHDTCGVHNLHGMPGLLGGIASIVFAVLATPESYGKGLYHIFP-MI-GGNG--HGMATSQALYQLFGLLVTLVIALV 401 (442)
T ss_pred cccccccccccccccchHHHHHHHHHHHHhhcchhhcccccccccc-ee-cCCC--ccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887422 211 1121 00 0000 013458999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCChHHH
Q 043627 437 TMGPLFYGLKKINLLRISTDDE 458 (504)
Q Consensus 437 ~t~ii~~il~~~~~LRv~~e~E 458 (504)
.+++...+||. ...|.++|+|
T Consensus 402 gGlLtGllLkl-~~w~qp~d~~ 422 (442)
T KOG3796|consen 402 GGLLTGLLLKL-KIWDQPSDDE 422 (442)
T ss_pred hhhhhhheeec-cccCCCChhh
Confidence 99999999886 4556655544
No 8
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=67.78 E-value=50 Score=35.41 Aligned_cols=141 Identities=23% Similarity=0.219 Sum_probs=90.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHH---HHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccccccc
Q 043627 43 SFAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMN---IMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFG 119 (504)
Q Consensus 43 ~~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~---il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~~f~ 119 (504)
...-|..+..+.+.+.++--+||= +|+.-..|... +++..+++.+.+.+.|.++.|-.. |..
T Consensus 185 ~~~~s~~~~~lG~~lLw~gW~gFN---~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk~----------- 249 (399)
T PF00909_consen 185 IPPHSPPLAMLGTLLLWFGWFGFN---AGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GKW----------- 249 (399)
T ss_dssp --HCHHHHHHHHHHHHHHHHHHHH---HCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS------------
T ss_pred CCCCcHHHhhhhHHHHHHHhcccc---cccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-ccc-----------
Confidence 344567888888888887777765 45555444433 678889999999999998876443 210
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCc
Q 043627 120 LRDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSG 199 (504)
Q Consensus 120 ~~~~~~~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG 199 (504)
+ ...+.+.+.|...+ +.+-+.=.++.+-++..++ ++.++....+ |+.+ +++
T Consensus 250 ---------~-~~~~~nG~laGlVa---ita~~~~v~p~~A~~iG~i-ag~i~~~~~~-------~l~~--------~~~ 300 (399)
T PF00909_consen 250 ---------S-MVGICNGALAGLVA---ITAGAGYVTPWGALLIGAI-AGLISYFGVS-------WLLK--------RLK 300 (399)
T ss_dssp -----------HHHHHHHHHHHHHH---HTTTTTTS-HHHHHHHHHH-HHHHHHHHHH-------HHHH--------HHT
T ss_pred ---------c-hhhhhhhhhhhhhh---eecccCCCcHHHHHHhhhh-Hhhhhhhhee-------cccc--------eeE
Confidence 0 11233444443332 2444566777777777754 4455444333 3332 689
Q ss_pred eeeecCCchHhHHHHHHHHHHHHHHcCC
Q 043627 200 VIDFAGSGVVHMVGGIAGLWGALIEGPR 227 (504)
Q Consensus 200 ~~DfaGs~vVH~~gG~~aLv~a~~lGpR 227 (504)
+.|--+.-.||.++|+.|...+-++..+
T Consensus 301 iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 328 (399)
T PF00909_consen 301 IDDPVGAFAVHGVGGIWGTILTGLFASP 328 (399)
T ss_dssp S-HTTGHHHHCHHHHHHHHHHHHHHCCC
T ss_pred eccccceEeeeeccHHHHHHHHHHHhcc
Confidence 9999999999999999999988777543
No 9
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=59.61 E-value=1e+02 Score=33.35 Aligned_cols=138 Identities=20% Similarity=0.197 Sum_probs=82.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCcc--hhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCcccccccccccc
Q 043627 45 AVNTTYLLFSAYLVFAMQLGFAMLCAGSVR--AKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRD 122 (504)
Q Consensus 45 ~~d~~w~l~~~~lV~~M~~Gfalle~G~vr--~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~~f~~~~ 122 (504)
.-|..+.++.+.+.++--+|| .+|+.- ...+..+++...++.+.+.+.|+++-|-. .+... .+
T Consensus 193 ~~n~~~~~lGt~lLw~gW~gF---N~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk~~--~~--------- 257 (403)
T TIGR00836 193 PHNVPLVVLGTFILWFGWFGF---NAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGKPT--LL--------- 257 (403)
T ss_pred CCCHHHHHHHHHHHHHHHhcc---cchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--HH---------
Confidence 346788888888888776666 344432 23567888888999999999999987642 23110 00
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceee
Q 043627 123 VPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVID 202 (504)
Q Consensus 123 ~~~~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~D 202 (504)
.+.+.+ .+-.....+-++=.++..-++..++ +++++....++ +. .++++.|
T Consensus 258 ----------~~~nG~---LAGLVaita~a~~v~p~~A~viG~i-ag~~~~~~~~~-------l~--------~~~~iDD 308 (403)
T TIGR00836 258 ----------GACNGI---LAGLVAITPGCGVVTPWGAIIIGLV-AGVLCYLAVSK-------LK--------KKLKIDD 308 (403)
T ss_pred ----------HHHhhh---hhhheeecCCCCCCCHHHHHHHHHH-HHHHHHHHHHH-------HH--------HHcCCCC
Confidence 011111 1111112222344555555555543 33333322211 11 1578999
Q ss_pred ecCCchHhHHHHHHHHHHHHHHcC
Q 043627 203 FAGSGVVHMVGGIAGLWGALIEGP 226 (504)
Q Consensus 203 faGs~vVH~~gG~~aLv~a~~lGp 226 (504)
--+.-.||..+|+.|....-++.+
T Consensus 309 ~~~~~~vHg~~Gi~G~i~~glfa~ 332 (403)
T TIGR00836 309 PLDAFAVHGVGGIWGLIATGLFAA 332 (403)
T ss_pred CcccchhhhhhHHHHHHHHHHhcc
Confidence 999999999999999988877764
No 10
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=44.46 E-value=14 Score=36.20 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=48.9
Q ss_pred CceeeccccceeeeeeeeccCCCC---------cChhHHHHHHHhhhHhhhh----hhccccccccccccccccccc
Q 043627 315 HWNVIDVCNGLLGGFAAITSGCSV---------VEPWAAIICGFVAAWVLIG----CNKLGEKLKYDDPLEAAQLHG 378 (504)
Q Consensus 315 k~~~~~~~nG~LaGLVaITa~~~~---------v~p~~A~iiG~iag~v~~~----~~~l~~kl~IDD~v~a~~vHg 378 (504)
++++.....|.++|.++....+-. .++|.+++++++++++... .+.+|++.+|.|--+.+|=||
T Consensus 160 ~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 160 KISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCcC
Confidence 466777888988888776544331 5678999999999887643 456777899999999999887
No 11
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=42.96 E-value=2.5e+02 Score=30.42 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh---cCcc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCcccccccccc
Q 043627 45 AVNTTYLLFSAYLVFAMQLGFAMLCA---GSVR-AKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGL 120 (504)
Q Consensus 45 ~~d~~w~l~~~~lV~~M~~Gfalle~---G~vr-~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~~f~~ 120 (504)
.-|..+..+.+.+.++--+||=-=.+ ...+ .+.+..+.+...+..+.+.+.|.++-|-. ++...
T Consensus 202 ~~n~~~~~lG~~iLw~gW~gFN~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-~gk~~----------- 269 (404)
T TIGR03644 202 GSNLPLATLGTFILWMGWFGFNGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLL-FGKAD----------- 269 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC-----------
Confidence 34677888999998887777742211 1122 23456778888889999999999986643 23210
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCce
Q 043627 121 RDVPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGV 200 (504)
Q Consensus 121 ~~~~~~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~ 200 (504)
...+.+.+.|... +| -+-+.=.++..-++..+ ++++++..... ++. ++++
T Consensus 270 ----------~~~~~nG~LAGLV-aI--Ta~~~~v~p~~A~iiG~-iag~v~~~~~~-------~~~---------~~~i 319 (404)
T TIGR03644 270 ----------LTMVLNGALAGLV-AI--TAEPLTPSPLAATLIGA-VGGVIVVFSIV-------LLD---------KLKI 319 (404)
T ss_pred ----------HHHHHHHHHhhhh-hh--ccccCCCCHHHHHHHHH-HHHHHHHHHHH-------HHH---------hCCC
Confidence 0112222222221 11 22235556666666665 44555544322 232 4789
Q ss_pred eeecCCchHhHHHHHHHHHHHHHH
Q 043627 201 IDFAGSGVVHMVGGIAGLWGALIE 224 (504)
Q Consensus 201 ~DfaGs~vVH~~gG~~aLv~a~~l 224 (504)
.|--+.-.||..+|+.|...+=+.
T Consensus 320 DD~~~~~~vHg~~Gi~G~i~~glf 343 (404)
T TIGR03644 320 DDPVGAISVHGVAGIWGTLVVPIT 343 (404)
T ss_pred CCCcCchHhhhHHHHHHHHHHHHh
Confidence 999999999999999998877665
No 12
>PLN02594 phosphatidate cytidylyltransferase
Probab=41.45 E-value=8.8 Score=40.44 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=32.1
Q ss_pred hhHHHHHHHhhhHhh----hhhhccccccccccccccccccc
Q 043627 341 PWAAIICGFVAAWVL----IGCNKLGEKLKYDDPLEAAQLHG 378 (504)
Q Consensus 341 p~~A~iiG~iag~v~----~~~~~l~~kl~IDD~v~a~~vHg 378 (504)
.+.++++|++++++. ...+.+++.+||.|--+.+|-||
T Consensus 235 ~~h~l~l~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCc
Confidence 578999999999887 34567788899999999999998
No 13
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=36.60 E-value=22 Score=36.44 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHh-----CCceeeccccceeeeeeeeccCCCC--------cChhHHHHHHHhhhHhhhh----hhcc
Q 043627 299 CTAALTTLFSKRLLV-----GHWNVIDVCNGLLGGFAAITSGCSV--------VEPWAAIICGFVAAWVLIG----CNKL 361 (504)
Q Consensus 299 a~g~l~~~~~~~~~~-----~k~~~~~~~nG~LaGLVaITa~~~~--------v~p~~A~iiG~iag~v~~~----~~~l 361 (504)
-++=..+.+.-+... .|.|+.-.-.|.++|++..+-.+.. .+++..+++|++.++.... -+.+
T Consensus 162 w~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GDL~ES~l 241 (285)
T PRK11624 162 WGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLGDLTESMF 241 (285)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444555555432 2578888999999998765433221 2566777888887776643 3567
Q ss_pred ccccccccccccccccc
Q 043627 362 GEKLKYDDPLEAAQLHG 378 (504)
Q Consensus 362 ~~kl~IDD~v~a~~vHg 378 (504)
|++.+|.|--..+|=||
T Consensus 242 KR~~gVKDSG~llPGHG 258 (285)
T PRK11624 242 KREAGIKDSGHLIPGHG 258 (285)
T ss_pred hhccCCCCCcCcCCCcC
Confidence 78899999999999887
No 14
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=34.87 E-value=93 Score=29.78 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043627 420 LAAQIIQILVIAGWVTATMGPLFYGLKKIN 449 (504)
Q Consensus 420 l~~Ql~g~~vi~~w~~~~t~ii~~il~~~~ 449 (504)
..-|++|++++.+.+.+.+++...++||+.
T Consensus 67 ~~G~~igi~~~gv~Si~aAllY~~~l~k~~ 96 (173)
T PF11085_consen 67 WLGNLIGIVFIGVFSIVAALLYYALLKKFK 96 (173)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345788999998888888888888888763
No 15
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=31.54 E-value=76 Score=33.08 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=68.2
Q ss_pred CcChhHHHHHHHhhhHhh-hhhhccccccccccccccccccccch-hhHHHHHHhhcccccc-cc-cCCCCCCCC-cccc
Q 043627 338 VVEPWAAIICGFVAAWVL-IGCNKLGEKLKYDDPLEAAQLHGGCG-TWGILFTGLFAREAYV-GE-VYPGRPGRP-YGLF 412 (504)
Q Consensus 338 ~v~p~~A~iiG~iag~v~-~~~~~l~~kl~IDD~v~a~~vHg~~G-i~G~l~~glFa~~~~~-~~-~~~g~~~~~-~Gl~ 412 (504)
.-+||..+++|+++|.++ .....+-.|+|-|.-+--.++|.++- +-.-+.-.+|.+.... .+ ..+.-+..| .|
T Consensus 59 t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~nqiisG~alnl~a~Glt~fl~~~~~~~~~~~~~~~~~p~l~~ip~~g-- 136 (304)
T COG1079 59 TGSPWLGLLAAALVGALFGLLHAFLTIKLRANQIISGLALNLLASGLTAFLGQSIFGQPGTTFQPIDIPGLSDIPVIG-- 136 (304)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCccCCcccccCcccc--
Confidence 568999999999999876 55556778899999988888887653 3334445555554310 00 000000001 11
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCC------ChHHHhcCCccccc
Q 043627 413 MGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKIN-LLRI------STDDEMAGMDLTRH 467 (504)
Q Consensus 413 ~gg~~~ql~~Ql~g~~vi~~w~~~~t~ii~~il~~~~-~LRv------~~e~E~~GlD~~~h 467 (504)
..+.-|- .....++....+.+++++|+. +||+ ++..|..|.|+...
T Consensus 137 -----~~~~~~~----~~~y~ai~lv~~~~~~L~rTr~GL~lravGE~P~aad~~Gi~V~r~ 189 (304)
T COG1079 137 -----PALFGQS----PLVYLAILLVALVWYVLYRTRFGLRLRAVGENPAAADAMGINVYRY 189 (304)
T ss_pred -----chhcccC----HHHHHHHHHHHHHHHHHhccccceEEEEecCChhHHHhCCCChhhH
Confidence 0011111 222233344556778888884 5554 44567788887554
No 16
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=30.49 E-value=8e+02 Score=27.39 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCC-Cc----------ChhHHHHHHHhhhHhhhh
Q 043627 289 RTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCS-VV----------EPWAAIICGFVAAWVLIG 357 (504)
Q Consensus 289 ~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~-~v----------~p~~A~iiG~iag~v~~~ 357 (504)
...|=+.+|+..|+-+|+++.-..+--.+-.+..-|.=.|.-...-+.. .+ .-...++-|+++++++..
T Consensus 103 ~~lmlgqva~L~G~a~W~l~At~~~~PvSttHsiVgatigfs~~~~g~~Gi~w~~v~~iv~swfiSpilsg~~s~ilf~~ 182 (512)
T KOG2493|consen 103 KTLMLGQVAALFGSAAWLLVATFLKLPVSTTHSIVGATIGFSLVARGFNGIVWMEVIKIVASWFISPILSGIISAILFFL 182 (512)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCccceeeeeeheeeeeeeeccccceeehhhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4567788889999999999887765555555555444333322222221 11 122345556777777654
Q ss_pred hh
Q 043627 358 CN 359 (504)
Q Consensus 358 ~~ 359 (504)
..
T Consensus 183 v~ 184 (512)
T KOG2493|consen 183 VD 184 (512)
T ss_pred HH
Confidence 43
No 17
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=29.11 E-value=15 Score=37.45 Aligned_cols=54 Identities=24% Similarity=0.218 Sum_probs=41.1
Q ss_pred CCceeeccccc--eeeeeeeeccCCCCcChhHHHHHHHhhhHhh-hhhhcccccccccc
Q 043627 314 GHWNVIDVCNG--LLGGFAAITSGCSVVEPWAAIICGFVAAWVL-IGCNKLGEKLKYDD 369 (504)
Q Consensus 314 ~k~~~~~~~nG--~LaGLVaITa~~~~v~p~~A~iiG~iag~v~-~~~~~l~~kl~IDD 369 (504)
+-+|+ ...| .+.|-|+.|.-..=++||.|.+++++||.+. .....+..|+||+|
T Consensus 31 nFPDL--TvdGsfpLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k~kI~~ 87 (293)
T COG4120 31 NFPDL--TVDGSFPLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVKFKILT 87 (293)
T ss_pred cCCCc--cccCcccchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44455 3455 4777788888888899999999999999887 44455677899987
No 18
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=28.27 E-value=1.6e+02 Score=26.28 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCcchhh--HH-HHHHHHHHHHHHHHHHHHHhhhh
Q 043627 59 FAMQLGFAMLCAGSVRAKN--TM-NIMLTNVLDAAAGALSYYLFGFA 102 (504)
Q Consensus 59 ~~M~~Gfalle~G~vr~kn--~~-~il~k~~~~~~v~~i~~~~iGy~ 102 (504)
.++..|+...|.|.+-+.+ .. -.++-.++....+++.|+.+|+-
T Consensus 17 ~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGml 63 (114)
T PF11023_consen 17 SLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGML 63 (114)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444666666666554322 22 23567788888899999999975
No 19
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=27.72 E-value=29 Score=35.09 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=54.3
Q ss_pred HHHHHHHHHHh-----CCceeeccccceeeeeeeeccCCCC---------cChhHHHHHHHhhhHhhhhh----hccccc
Q 043627 303 LTTLFSKRLLV-----GHWNVIDVCNGLLGGFAAITSGCSV---------VEPWAAIICGFVAAWVLIGC----NKLGEK 364 (504)
Q Consensus 303 l~~~~~~~~~~-----~k~~~~~~~nG~LaGLVaITa~~~~---------v~p~~A~iiG~iag~v~~~~----~~l~~k 364 (504)
+.+.++.+... .+.|+.-...|.+.|.+..+..|-. .++|..++++++.+++.... +.++++
T Consensus 148 i~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~ 227 (265)
T COG0575 148 IGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGDLFESYIKRL 227 (265)
T ss_pred hhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHc
Confidence 34555555543 3478888999999987766554432 23577888888888877443 367788
Q ss_pred cccccccccccccc
Q 043627 365 LKYDDPLEAAQLHG 378 (504)
Q Consensus 365 l~IDD~v~a~~vHg 378 (504)
+++.|--..+|=||
T Consensus 228 ~gvKDsg~liPGHG 241 (265)
T COG0575 228 LGIKDSGWLIPGHG 241 (265)
T ss_pred cCCCCcCCCCCCcC
Confidence 99999989999887
No 20
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.67 E-value=47 Score=32.19 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=59.0
Q ss_pred CchhHHHhhHHHHHHHhhhcCccchhhhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCc
Q 043627 243 HSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLV------GHW 316 (504)
Q Consensus 243 ~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~------~k~ 316 (504)
.++....+-..+++++.+.+-.|-..-++. +.. + ..-.+++.+.+..+++....+.++.. +|.
T Consensus 76 ~~~~~~~ld~~L~~~~if~~~~gi~~~f~~------~~~---~--~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~ 144 (206)
T PF06570_consen 76 SNPWLMALDNSLLFFGIFSLLFGIMGFFSP------KNS---N--QYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRP 144 (206)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccc---c--cccHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 356677788888888888777765443321 000 1 11445666666666666555554432 222
Q ss_pred eeec-cccc-----eeeee---eeeccC--CCCcChhHHHHHHHhhhHhhhhhhcccccccccc
Q 043627 317 NVID-VCNG-----LLGGF---AAITSG--CSVVEPWAAIICGFVAAWVLIGCNKLGEKLKYDD 369 (504)
Q Consensus 317 ~~~~-~~nG-----~LaGL---VaITa~--~~~v~p~~A~iiG~iag~v~~~~~~l~~kl~IDD 369 (504)
.... +.-+ +..++ .+.-|. ...++||.-+++|+++-.+.+ ++++|++|-+
T Consensus 145 ~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~---~lkkk~~i~~ 205 (206)
T PF06570_consen 145 SWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRF---YLKKKYNITG 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHH---HHHHHhCCCC
Confidence 2111 1101 11111 111222 236789999999877766553 3566777743
No 21
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=22.10 E-value=3.4e+02 Score=27.96 Aligned_cols=126 Identities=25% Similarity=0.303 Sum_probs=72.1
Q ss_pred HHHHHHHHHc--CCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccCCCCCCCCchhhHHHHHHH
Q 043627 216 AGLWGALIEG--PRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVT 293 (504)
Q Consensus 216 ~aLv~a~~lG--pR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~~~~~~~~~~~~~~~~~~N 293 (504)
.+|.++..+. ||..||.- |+-. . ..+.++.=|++|+-.+-|.|-..-. +..+ + |.--....++.-
T Consensus 64 lsL~vsrli~~~p~~~RF~~-Gfwh-l--EplvL~ing~ll~ll~lyAlinAl~-~l~d----G----GR~v~~~~ai~y 130 (314)
T COG3965 64 LSLLVSRLIAKDPRDARFPY-GFWH-L--EPLVLAINGTLLALLCLYALINALG-SLLD----G----GREVEPGHAIAY 130 (314)
T ss_pred HHHHHHHHhccCCCccccCc-chhh-h--hhhHhhhccHHHHHHHHHHHHHHHH-HHhc----C----CccccccHHHHH
Confidence 4677777776 56566632 2211 1 2356778899999999888764321 1111 1 111234567777
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCceee-------ccccceeeeeeeeccCCCCcChhHHHHHHHhhhHhhhhhhccccccc
Q 043627 294 TTLAGCTAALTTLFSKRLLVGHWNVI-------DVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLGEKLK 366 (504)
Q Consensus 294 T~la~a~g~l~~~~~~~~~~~k~~~~-------~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~l~~kl~ 366 (504)
|.++-..++..+....+..++.-|.. ..+++.|+ .|+.+|++++...-. .++.+---
T Consensus 131 t~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS---------------~al~VaF~~a~~l~~-T~~a~l~~ 194 (314)
T COG3965 131 TLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLS---------------AALFVAFAAAWLLAG-TKFAHLVV 194 (314)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHH---------------HHHHHHHHHHHHhcc-Cchhhhhc
Confidence 88888888888888877654333321 12333333 678889888865422 22333334
Q ss_pred cccc
Q 043627 367 YDDP 370 (504)
Q Consensus 367 IDD~ 370 (504)
.-||
T Consensus 195 Y~DP 198 (314)
T COG3965 195 YADP 198 (314)
T ss_pred ccCH
Confidence 5677
No 22
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=21.93 E-value=15 Score=30.82 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCcee-------------eccccceeeeeeeeccCCCCcChhHHHHHHHhhhH
Q 043627 296 LAGCTAALTTLFSKRLLVGHWNV-------------IDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAW 353 (504)
Q Consensus 296 la~a~g~l~~~~~~~~~~~k~~~-------------~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~ 353 (504)
+|...|+++.++-++..+||... .++.-|.+|++.++|...+.-+-+.-+.+.++||.
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~ 74 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGI 74 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhc
Confidence 45667888888888554444331 13566677777777777766666666666666653
No 23
>PRK02935 hypothetical protein; Provisional
Probab=20.24 E-value=2.6e+02 Score=24.75 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCcchhhH--HH-HHHHHHHHHHHHHHHHHHhhhh
Q 043627 60 AMQLGFAMLCAGSVRAKNT--MN-IMLTNVLDAAAGALSYYLFGFA 102 (504)
Q Consensus 60 ~M~~Gfalle~G~vr~kn~--~~-il~k~~~~~~v~~i~~~~iGy~ 102 (504)
++..||...|.|..-+.+. .. .|+-.++.+..+++.||.+|+-
T Consensus 19 lvfiG~~vMy~Giff~~~~~~m~ifm~~G~l~~l~S~vvYFwiGml 64 (110)
T PRK02935 19 LVFIGFIVMYLGIFFRESIIIMTIFMLLGFLAVIASTVVYFWIGML 64 (110)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555555554443222 11 2456677777788999999873
Done!