Query 043627
Match_columns 504
No_of_seqs 159 out of 1367
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 2E-109 7E-114 866.5 27.2 394 44-478 2-396 (399)
2 1u7g_A Probable ammonium trans 100.0 7E-100 2E-104 792.0 26.5 373 43-453 5-385 (385)
3 3b9w_A Ammonium transporter fa 100.0 3.8E-80 1.3E-84 646.0 21.5 336 62-474 28-377 (407)
4 3hd6_A Ammonium transporter RH 100.0 3.6E-72 1.2E-76 595.8 23.0 367 63-485 77-461 (490)
5 3b9w_A Ammonium transporter fa 60.5 46 0.0016 34.6 10.6 142 45-225 174-315 (407)
6 3hd6_A Ammonium transporter RH 38.4 1.1E+02 0.0036 32.6 9.3 141 46-225 221-364 (490)
7 2b2h_A AMT-1, ammonium transpo 16.9 8.3E+02 0.029 24.9 12.9 135 45-225 184-320 (399)
8 1u7g_A Probable ammonium trans 10.7 1.2E+03 0.041 23.5 12.5 138 45-226 195-334 (385)
9 2jaf_A Halorhodopsin, HR; chro 6.6 9.9E+02 0.034 22.9 7.1 53 46-101 30-82 (274)
10 3tlw_A GLR4197 protein, GLIC; 6.1 7.8E+02 0.027 23.6 6.1 54 48-101 260-321 (321)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=2.1e-109 Score=866.48 Aligned_cols=394 Identities=31% Similarity=0.537 Sum_probs=361.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccc-ccccccc
Q 043627 44 FAVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGR-HFFGLRD 122 (504)
Q Consensus 44 ~~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~-~~f~~~~ 122 (504)
++.|+.|+|+|++|||+|||||+|+|+|+||+||++|+++||++++++++++||++||+++||++.++|||+ .++++.+
T Consensus 2 ~~~d~~w~l~~~~LV~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~~~~~ 81 (399)
T 2b2h_A 2 SDGNVAWILASTALVMLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYALLSG 81 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTGGGTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHhhccC
Confidence 357999999999999999999999999999999999999999999999999999999999999766789998 4555554
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceee
Q 043627 123 VPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVID 202 (504)
Q Consensus 123 ~~~~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~D 202 (504)
... .++.+++||++||+++++|++||++||+|+.+|++|+++|+++||||++||+|+ +|||. ++|++|
T Consensus 82 ~~~--~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~---------~lG~~D 149 (399)
T 2b2h_A 82 VKG--EDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLA---------KLGALD 149 (399)
T ss_dssp CCT--HHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH---------HTTCCC
T ss_pred CCC--CchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHH---------hcCCcc
Confidence 332 248899999999999999999999999999999999999999999999999998 89997 589999
Q ss_pred ecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccCCCCCCCC
Q 043627 203 FAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYG 282 (504)
Q Consensus 203 faGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~~~~~~~~ 282 (504)
||||+|||++||++||+++++||||++|. + +++||||++++++|+++||+||||||+||++.. +
T Consensus 150 FAGs~vVH~~gG~~aL~~a~~LG~R~g~~-~----~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~--------~--- 213 (399)
T 2b2h_A 150 FAGGMVVHISSGFAALAVAMTIGKRAGFE-E----YSIEPHSIPLTLIGAALLWFGWFGFNGGSALAA--------N--- 213 (399)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHCCCTTTT-T----SCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSS--------S---
T ss_pred ccCCeEEEechhHHHHHHHHHcCCCCCCC-C----CCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccc--------c---
Confidence 99999999999999999999999999853 2 367999999999999999999999999998765 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHHhhhHhhhhhhccc
Q 043627 283 QWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNKLG 362 (504)
Q Consensus 283 ~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~l~ 362 (504)
..++++++||++|+++|+++|+++++++ ||+|+..++||+|||||+|||+|++++||+|++||+++|++|+...+++
T Consensus 214 --~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~ 290 (399)
T 2b2h_A 214 --DVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFR 290 (399)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999 9999999999999999999999999999999999999999997777889
Q ss_pred cccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043627 363 EKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLF 442 (504)
Q Consensus 363 ~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w~~~~t~ii~ 442 (504)
+|+|||||||++++||+||+||++++|+|++++.. + ..|++| ++++|++.|+++++++++|+++.+++++
T Consensus 291 ~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~-----g----~~Gl~~-g~~~ql~~Ql~g~~~~~~~~~v~~~i~~ 360 (399)
T 2b2h_A 291 IKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVN-----G----YAGLLF-GNPQLLVSQLIAVASTTAYAFLVTLILA 360 (399)
T ss_dssp HHTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHH-----S----CCCGGG-TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCceeccchhhHHHHHHHHHHcccccc-----C----CCcccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987521 1 137888 5689999999999999999999999999
Q ss_pred HHHhhcccCCCChHHHhcCCcccccccccCCCCCCC
Q 043627 443 YGLKKINLLRISTDDEMAGMDLTRHGGFAYAYHDED 478 (504)
Q Consensus 443 ~il~~~~~LRv~~e~E~~GlD~~~hg~~ay~~~~~~ 478 (504)
+++|++.+|||++|||++|||.+||||++|+.+..+
T Consensus 361 ~il~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~~~ 396 (399)
T 2b2h_A 361 KAVDAAVGLRVSSQEEYVGLDLSQHEEVAYTLEHHH 396 (399)
T ss_dssp HHHHHHTCSBCCHHHHHHCHHHHHHCCCSCC-----
T ss_pred HHHHhcccCCCCHHHHHhCCCHHHhCcccCCccccc
Confidence 999999999999999999999999999999876654
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=7.1e-100 Score=791.99 Aligned_cols=373 Identities=28% Similarity=0.505 Sum_probs=339.9
Q ss_pred cccchHHHHHHHHHHHHHHH-HHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccc-ccccc
Q 043627 43 SFAVNTTYLLFSAYLVFAMQ-LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGR-HFFGL 120 (504)
Q Consensus 43 ~~~~d~~w~l~~~~lV~~M~-~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~-~~f~~ 120 (504)
.++.|+.|+|+|++|||+|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||++ ++|||+ .++++
T Consensus 5 ~~~~d~~w~l~~~~LV~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~-~~~iG~~~~~~l 83 (385)
T 1u7g_A 5 ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLML 83 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGGG
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccccCcchhhc
Confidence 45789999999999999999 9999999999999999999999999999999999999999999976 789998 45555
Q ss_pred ccCCCC-----CchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccc
Q 043627 121 RDVPSP-----LTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLL 195 (504)
Q Consensus 121 ~~~~~~-----~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~ 195 (504)
.+.+.+ .+++.+++||++||+++++|++|+++||+|+.+|++|+++|+++||||++||+|+ +|||.
T Consensus 84 ~~~~~~~~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~-------- 154 (385)
T 1u7g_A 84 KNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLA-------- 154 (385)
T ss_dssp TTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHH--------
T ss_pred cCCCCcccccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhheeEc-chhhh--------
Confidence 444322 2568999999999999999999999999999999999999999999999999998 89997
Q ss_pred cCCceeeecCCchHhHHHHHHHHHHHHHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccC
Q 043627 196 FGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYG 275 (504)
Q Consensus 196 ~~lG~~DfaGs~vVH~~gG~~aLv~a~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~ 275 (504)
++|++|||||+|||++||++||+++++||||++| ++ +++||||++++++|+++||+||||||+||++..
T Consensus 155 -~lG~~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~-~~----~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~----- 223 (385)
T 1u7g_A 155 -SHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGF-GK----EAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTA----- 223 (385)
T ss_dssp -HHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCT-TC----SSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSS-----
T ss_pred -hcceeeccCCeEEEecchHHHHHHHHHhcCCCCC-CC----CCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhc-----
Confidence 5899999999999999999999999999999985 22 468999999999999999999999999998865
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHHhhhHhh
Q 043627 276 ESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVL 355 (504)
Q Consensus 276 ~~~~~~~~~~~~~~~~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v~ 355 (504)
| ..++++++||++|+|+|+++|++++++++||+|+.+++||+|||||+|||+|++++||+|++||+++|++|
T Consensus 224 ---~-----~~a~~a~~nT~lAaaag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~ 295 (385)
T 1u7g_A 224 ---N-----EIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAG 295 (385)
T ss_dssp ---S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHH
T ss_pred ---c-----chhHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHH
Confidence 1 35789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc-cccccccccccccccccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHH
Q 043627 356 IGCNK-LGEKLKYDDPLEAAQLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWV 434 (504)
Q Consensus 356 ~~~~~-l~~kl~IDD~v~a~~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w~ 434 (504)
+...+ +++|+|||||||++++||+||+||++++|+|++++.. +. ....|.+|+ .|++.|+++++++.+|+
T Consensus 296 ~~~~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~-----g~-~~~~G~~~g---~ql~~Ql~g~~~~~~~~ 366 (385)
T 1u7g_A 296 LWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG-----GV-GFAEGVTMG---HQLLVQLESIAITIVWS 366 (385)
T ss_dssp HHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGT-----CC-CCCTTCCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCEeecccccHHHHHHHHHhcccccc-----Cc-cccCCcchh---HHHHHHHHHHHHHHHHH
Confidence 76665 6789999999999999999999999999999987621 11 011255553 59999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 043627 435 TATMGPLFYGLKKINLLRI 453 (504)
Q Consensus 435 ~~~t~ii~~il~~~~~LRv 453 (504)
++.++++++++|++.+|||
T Consensus 367 ~v~~~i~~~il~~~~glRv 385 (385)
T 1u7g_A 367 GVVAFIGYKLADLTVGLRV 385 (385)
T ss_dssp HHHHHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHHHHccCCcC
Confidence 9999999999999999997
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=3.8e-80 Score=646.05 Aligned_cols=336 Identities=23% Similarity=0.238 Sum_probs=292.2
Q ss_pred HHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccccccccccCCCCCchhHHHHHHHHHHH
Q 043627 62 QLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWAFAI 141 (504)
Q Consensus 62 ~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~~f~~~~~~~~~~~~~~~~fq~~Faa 141 (504)
.+||+||++++ |||..+.+.+|++.. ...++|++++|. ++|.. +...+...+++||++||+
T Consensus 28 ~iGfGFL~~~L--rk~~~s~v~~n~l~~-a~~~QW~~l~~~-------~Gf~~---------~g~ip~~~~~~fq~~Faa 88 (407)
T 3b9w_A 28 LVGFGFLMVFV--RRYGFSATTGTYLVV-ATGLPLYILLRA-------NGIFG---------HALTPHSVDAVIYAEFAV 88 (407)
T ss_dssp HHHHHHHGGGS--TTCHHHHHHHHHHHH-HHHHHHHHHHHH-------TTTTS---------SCCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHhc-------ccccC---------CCcchHHHHHHHHHHHHH
Confidence 46999999998 999999999999985 488899999982 12221 112245789999999999
Q ss_pred HHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceeeecCCchHhHHHHHHHHHHH
Q 043627 142 AAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGA 221 (504)
Q Consensus 142 ~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aLv~a 221 (504)
++++|++||++||+|+.+|++|++ |.++||||.+||+|+ +||+. ..|++|||||++||++||++||+++
T Consensus 89 ~t~~IvsGAvaeR~kf~~~li~~~-~~~~vY~~~~~wvw~-gG~~~---------~~G~~DfAGs~vVH~~gG~~aLa~a 157 (407)
T 3b9w_A 89 ATGLIAMGAVLGRLRVFQYALLAL-FIVPVYLLNEWLVLD-NASGL---------TEGFQDSAGSIAIHAFGAYFGLGVS 157 (407)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHH-HHHHHHHHHHHHHTT-CTTSS---------CTTCCCTTCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHHHHH-HHHHhccceeEEEeC-Ccchh---------hcceeeccCceEEEeCchHHHHHHH
Confidence 999999999999999999999995 678999999999998 78875 2499999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 043627 222 LIEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTA 301 (504)
Q Consensus 222 ~~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g 301 (504)
++||||++|+++ + + +||||++++++|+++||+||||||+|. .. ...++++++||++|+|+|
T Consensus 158 ~~LG~R~~~~~~--~-~-~~~hn~~~~~lGt~lLW~GWfGFN~Gl--~~-------------~~~~~~a~~NT~lAaaag 218 (407)
T 3b9w_A 158 IALTTAAQRAQP--I-E-SDATSDRFSMLGSMVLWLFWPSFATAI--VP-------------FEQMPQTIVNTLLALCGA 218 (407)
T ss_dssp HHHCCHHHHTSC--C-C-CCHHHHHHHHHHHHHHHHHHHHHHHTT--SC-------------GGGHHHHHHHHHHHHHHH
T ss_pred HHhcCccccCCC--C-c-CCCCCHHHHHHHHHHHHHHHHhhhhhh--cc-------------chhhHHHHHHhHHHHHHH
Confidence 999999776532 2 3 899999999999999999999999993 22 135789999999999999
Q ss_pred HHHHHHHHHH-HhCCceeeccccceeeeeeeeccCCCCcChhHHHHHHHhhhHhhhhhhc-----ccccccccccccccc
Q 043627 302 ALTTLFSKRL-LVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGCNK-----LGEKLKYDDPLEAAQ 375 (504)
Q Consensus 302 ~l~~~~~~~~-~~~k~~~~~~~nG~LaGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~-----l~~kl~IDD~v~a~~ 375 (504)
+++|++++++ ++||+|+..++||+|||||+|||+|++++||+|++||+++|++|+...+ +++|+|||||||+++
T Consensus 219 ~l~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~ 298 (407)
T 3b9w_A 219 TLATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHN 298 (407)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCee
Confidence 9999999998 8899999999999999999999999999999999999999999966553 456799999999999
Q ss_pred ccccchhhHHHHHHhhcccccccccCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCh
Q 043627 376 LHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFMGGGGRLLAAQIIQILVIAGWVTATMGPLFYGLKKINLLRIST 455 (504)
Q Consensus 376 vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~gg~~~ql~~Ql~g~~vi~~w~~~~t~ii~~il~~~~~LRv~~ 455 (504)
+||+||+||++++|+|+.+. + ..|++|++++++|+++.++++++++|+ |+++
T Consensus 299 vHgv~Gi~G~l~~glfa~~~--------------~----------~~Ql~g~~~~~~~s~v~~~i~~~il~~----r~~~ 350 (407)
T 3b9w_A 299 LHGLPGLLGGFSAILIVPGI--------------A----------VAQLTGIGITLALALIGGVIAGALIKL----TGTT 350 (407)
T ss_dssp HTTHHHHHHHHHHHHHSTTC--------------H----------HHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCC
T ss_pred cchHHHHHHHHHHHHHccCC--------------c----------HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCH
Confidence 99999999999999998642 1 159999999999999999999999998 9999
Q ss_pred HHHhcC--------CcccccccccCCC
Q 043627 456 DDEMAG--------MDLTRHGGFAYAY 474 (504)
Q Consensus 456 e~E~~G--------lD~~~hg~~ay~~ 474 (504)
|+|..| +|.+||||++|+.
T Consensus 351 e~e~~g~~~we~p~ld~~~hg~~ayp~ 377 (407)
T 3b9w_A 351 KQAYEDSHEFIHLAGPEDEHKAERLVL 377 (407)
T ss_dssp SSTTCGGGTSSSCCCGGGC--------
T ss_pred HHHcCCcccccCccccHHHhchhhccc
Confidence 999999 9999999999963
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-72 Score=595.76 Aligned_cols=367 Identities=20% Similarity=0.180 Sum_probs=290.2
Q ss_pred HHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccccccccccCCCCCchhHHHHHHHHHHHH
Q 043627 63 LGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVPSPLTDYSFFLYQWAFAIA 142 (504)
Q Consensus 63 ~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~~f~~~~~~~~~~~~~~~~fq~~Faa~ 142 (504)
.||.||-+=+ ||.--+.+--|++..+++ ++|-++=-++-.. + ....-+...+++||++||++
T Consensus 77 ~GfGFLmtfl--kryg~ssv~~n~l~~a~~-~Qwa~l~~g~~~~-----------~----~~g~ip~~~~~~fq~~Faa~ 138 (490)
T 3hd6_A 77 VGFGFLMTFL--QRYGFSAVGFNFLLAAFG-IQWALLMQGWFHF-----------L----QDRYIVVGVENLINADFCVA 138 (490)
T ss_dssp THHHHHGGGS--TTCHHHHHHHHHHHHHHH-HHHHHHHHHHTTC-----------B----TTTBEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhccHHHHHHHHHHHHH-HHHHHHHHHHhcc-----------c----cCCCccHHHHHHHHHHHHHH
Confidence 4777766544 444556667777777766 8887763222110 0 01112457899999999999
Q ss_pred HHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceeeecCCchHhHHHHHHHHHHHH
Q 043627 143 AAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGAL 222 (504)
Q Consensus 143 a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~DfaGs~vVH~~gG~~aLv~a~ 222 (504)
+++|++||++||+|+.+|++|++++ +++||+ .||+ ||. ++|++|||||++||++||++||++++
T Consensus 139 t~~IvsGAvaeR~k~~~~li~~~l~-~~vY~~-~~w~-----~L~---------~lG~~DFAGs~vVH~~gG~aaLa~a~ 202 (490)
T 3hd6_A 139 SVCVAFGAVLGKVSPIQLLIMTFFQ-VTLFAV-NEFI-----LLN---------LLKVKDAGGSMTIHTFGAYFGLTVTR 202 (490)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHH-HHHHHH-HHHH-----HHT---------TSCCCCTTCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHH-HHHHhh-hHHH-----HHh---------ccCceeecCceeeeHHHHHHHHHHHH
Confidence 9999999999999999999999875 789998 4666 454 58999999999999999999999999
Q ss_pred HHcCCCCCCCCCCCccccCCCchhHHHhhHHHHHHHhhhcCccchhhhhhccCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 043627 223 IEGPRIGRFDQSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTILKSYGESGGYYGQWSAIGRTAVTTTLAGCTAA 302 (504)
Q Consensus 223 ~lGpR~grf~~~g~~~~~~~~s~~~~~lGt~lLw~GW~gFN~Gs~l~~~~~~~~~~~~~~~~~~~~~~~~NT~la~a~g~ 302 (504)
+||||. |++. .+++++++||++++++|+++||+||||||+|++.. ...++++++||++|+|+|+
T Consensus 203 vLG~R~-~~~~-~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~--------------~~~~~~a~~NT~lAaAag~ 266 (490)
T 3hd6_A 203 ILYRRN-LEQS-KERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH--------------GDSQHRAAINTYCSLAACV 266 (490)
T ss_dssp HTCCTT-GGGG-TTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSS--------------HHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcc-cccC-CCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhcc--------------chHHHHHHHHHHHHHHHHH
Confidence 999884 4322 23456789999999999999999999999988642 1356899999999999999
Q ss_pred HHHHHHHHH--HhCCceeeccccceeeeeeeeccCCC-CcChhHHHHHHHhhhHhhhhhhc-----cccccccccccccc
Q 043627 303 LTTLFSKRL--LVGHWNVIDVCNGLLGGFAAITSGCS-VVEPWAAIICGFVAAWVLIGCNK-----LGEKLKYDDPLEAA 374 (504)
Q Consensus 303 l~~~~~~~~--~~~k~~~~~~~nG~LaGLVaITa~~~-~v~p~~A~iiG~iag~v~~~~~~-----l~~kl~IDD~v~a~ 374 (504)
++|++++++ ++||+|+.+++||+|||||||||+|+ +++||+|++||+++|++|+...+ +++|+|||||||++
T Consensus 267 lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~ 346 (490)
T 3hd6_A 267 LTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGIN 346 (490)
T ss_dssp HHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred HHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccch
Confidence 999999986 68999999999999999999999999 69999999999999999966543 56899999999999
Q ss_pred cccccchhhHHHHHHhhcccccccccCCCCCCCCccccc--------c--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043627 375 QLHGGCGTWGILFTGLFAREAYVGEVYPGRPGRPYGLFM--------G--GGGRLLAAQIIQILVIAGWVTATMGPLFYG 444 (504)
Q Consensus 375 ~vHg~~Gi~G~l~~glFa~~~~~~~~~~g~~~~~~Gl~~--------g--g~~~ql~~Ql~g~~vi~~w~~~~t~ii~~i 444 (504)
++||+||+||++++|+|+... ..+.|+ ..|+++ + ++++|++.|++|++++++|+++.+++++++
T Consensus 347 ~vHGv~Gi~G~l~~glfa~~~-~~~~~g-----~~Gl~~~f~~~~~~gg~~~~~ql~~Ql~gv~~~~~~a~v~~~ii~~i 420 (490)
T 3hd6_A 347 NLHGIPGIIGGIVGAVTAASA-SLEVYG-----KEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLI 420 (490)
T ss_dssp HHTHHHHHHHHHHHHHHHHC----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhccc-cccccc-----cCcceeccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998753 111121 125543 1 247899999999999999999999999999
Q ss_pred HhhcccCCCChHHHhcCCcccccccccCCCCCCCCCCCCcc
Q 043627 445 LKKINLLRISTDDEMAGMDLTRHGGFAYAYHDEDDSSQKPA 485 (504)
Q Consensus 445 l~~~~~LRv~~e~E~~GlD~~~hg~~ay~~~~~~~~~~~~~ 485 (504)
+|++.++|+++|+|..|+|..|+.++.|+....++...|+.
T Consensus 421 Lk~~~~lRvs~e~e~~g~d~we~p~~~~~~~~~~~~~~~~~ 461 (490)
T 3hd6_A 421 LRLPFWGQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPS 461 (490)
T ss_dssp HTSTTSCCCCTTSTTCGGGTSCCCTTTC-------------
T ss_pred HhhccCCCCCHHHHhCCCceeecCcccccccCCCCcccCCc
Confidence 99999999999999999999999998887665555544433
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=60.51 E-value=46 Score=34.55 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=86.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCccccccccccccCC
Q 043627 45 AVNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRDVP 124 (504)
Q Consensus 45 ~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~~f~~~~~~ 124 (504)
.-|..+.++.+.+.|+--+|| .+|+.....+..+++...++.+.+.+.|.++-+-+-.|..
T Consensus 174 ~hn~~~~~lGt~lLW~GWfGF---N~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~---------------- 234 (407)
T 3b9w_A 174 ATSDRFSMLGSMVLWLFWPSF---ATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKA---------------- 234 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------------
T ss_pred CCCHHHHHHHHHHHHHHHHhh---hhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC----------------
Confidence 346678888888888766665 5665555667788899999999999999998765433321
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceeeec
Q 043627 125 SPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVIDFA 204 (504)
Q Consensus 125 ~~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~Dfa 204 (504)
+.. .....+.|. .....+-++=..+..-++..++ +++++.....+. .-+|. .++++.|--
T Consensus 235 ----~~~-~~~nG~LAG---LVAITa~~~~v~p~~A~iIG~i-aG~i~~~~~~~l---~~~l~--------~~l~iDD~l 294 (407)
T 3b9w_A 235 ----SIV-DMANAALAG---GVAIGSVCNIVGPVGAFVIGLL-GGAISVVGFVFI---QPMLE--------SKAKTIDTC 294 (407)
T ss_dssp ----CHH-HHHHHTTHH---HHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHHTH---HHHHH--------HHSCCCCTT
T ss_pred ----CHH-HHHHhhhhh---hheeccCCCCCCHHHHHHHHHH-HHHHHHHHHHHH---HHHHH--------hcCCCCCCC
Confidence 000 111111111 1112223344666666666653 444433211111 01111 147899999
Q ss_pred CCchHhHHHHHHHHHHHHHHc
Q 043627 205 GSGVVHMVGGIAGLWGALIEG 225 (504)
Q Consensus 205 Gs~vVH~~gG~~aLv~a~~lG 225 (504)
|.-.||.++|+.|...+-+..
T Consensus 295 ~a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 295 GVHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp CHHHHTTHHHHHHHHHHHHHS
T ss_pred CCeecchHHHHHHHHHHHHHc
Confidence 999999999999988876664
No 6
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=38.43 E-value=1.1e+02 Score=32.61 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=82.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccCCCCccccccccccccC
Q 043627 46 VNTTYLLFSAYLVFAMQLGFAMLCAGSVR-AKNTMNIMLTNVLDAAAGALSYYLFGFAFA-FGSPSNGFIGRHFFGLRDV 123 (504)
Q Consensus 46 ~d~~w~l~~~~lV~~M~~Gfalle~G~vr-~kn~~~il~k~~~~~~v~~i~~~~iGy~la-fG~~~~~fiG~~~f~~~~~ 123 (504)
-|..+.++.+.+.|+--+||= +|+.. ...+..+++...++.+.+++.|.++-+-+. .|..
T Consensus 221 hn~~~a~LGt~lLW~GWfGFN---~gs~~~~~~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~--------------- 282 (490)
T 3hd6_A 221 QSDLFAMIGTLFLWMYWPSFN---SAISYHGDSQHRAAINTYCSLAACVLTSVAISSALHKKGKL--------------- 282 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC---------------
T ss_pred CCHHHHHHHHHHHHHHHHhhc---hhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------------
Confidence 467788889998888888874 67765 344567788888999999999999866432 2210
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhhhcc-ccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceee
Q 043627 124 PSPLTDYSFFLYQWAFAIAAAGITSGSIAE-RTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVID 202 (504)
Q Consensus 124 ~~~~~~~~~~~fq~~Faa~a~tIvsGavaE-R~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~D 202 (504)
+.. .....+.|. ....++-++ =.....-++..++ +++++.....+. .-+|. .++++.|
T Consensus 283 -----s~~-~~~nG~LAG---LVAIT~~a~~~v~P~~AliIG~i-aG~i~~~~~~~l---~~~l~--------~kl~iDD 341 (490)
T 3hd6_A 283 -----DMV-HIQNATLAG---GVAVGTAAEMMLMPYGALIIGFV-CGIISTLGFVYL---TPFLE--------SRLHIQD 341 (490)
T ss_dssp -----CHH-HHHHGGGHH---HHHTTTTTTTCSCHHHHHHHHHH-HHHHHHHHHHHH---HHHHH--------HHHCCCC
T ss_pred -----CHH-Hhhhceeee---EEEEccCcccccCHHHHHHHHHH-HHHHHHHHHHHh---HHHHH--------HHCCCCc
Confidence 010 111111111 111122233 2455555555543 344332211110 00121 1578999
Q ss_pred ecCCchHhHHHHHHHHHHHHHHc
Q 043627 203 FAGSGVVHMVGGIAGLWGALIEG 225 (504)
Q Consensus 203 faGs~vVH~~gG~~aLv~a~~lG 225 (504)
--|.-.||..+|+.|...+-+..
T Consensus 342 ~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 342 TCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp TTCHHHHTHHHHHHHHHHHHHHH
T ss_pred cccchHHhhHHHHHHHHHHHHHh
Confidence 99999999999999987766554
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=16.90 E-value=8.3e+02 Score=24.92 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=86.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCcccccccccccc
Q 043627 45 AVNTTYLLFSAYLVFAMQLGFAMLCAGSVRA--KNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRD 122 (504)
Q Consensus 45 ~~d~~w~l~~~~lV~~M~~Gfalle~G~vr~--kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~~f~~~~ 122 (504)
.-|..+.++.+.+.|+--+||= +|+.-. ..+..+++...+..+.+.+.|.++-|-. |..
T Consensus 184 ~hn~~~~~lG~~lLW~GWfGFN---~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~-------------- 244 (399)
T 2b2h_A 184 PHSIPLTLIGAALLWFGWFGFN---GGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKP-------------- 244 (399)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHH---HGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCC--------------
T ss_pred CCCHHHHHHHHHHHHHHHHhhc---HHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCC--------------
Confidence 4567888889888888888864 444332 3466788888999999999999987654 421
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceee
Q 043627 123 VPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVID 202 (504)
Q Consensus 123 ~~~~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~D 202 (504)
+.. ...+.+.|- .....+-++=.++..-++..++ +++++.... ++. .++++.|
T Consensus 245 ------~~~-~~~nG~lAG---LVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~--------~l~--------~kl~iDD 297 (399)
T 2b2h_A 245 ------GSL-GIVSGAIAG---LAAITPAAGFVDVKGAIVIGLV-AGIVCYLAM--------DFR--------IKKKIDE 297 (399)
T ss_dssp ------CHH-HHHHHHHHH---HHHHTTTTTTCCHHHHHHHHHH-HHHHHHHHH--------HHH--------HHTTCCC
T ss_pred ------CHH-HHHHHHHHh---hhhhccccccCCHHHHHHHHHH-HHHHHHHHH--------HHH--------HHcCCCC
Confidence 010 111122221 1222333455667666666654 444433221 222 1589999
Q ss_pred ecCCchHhHHHHHHHHHHHHHHc
Q 043627 203 FAGSGVVHMVGGIAGLWGALIEG 225 (504)
Q Consensus 203 faGs~vVH~~gG~~aLv~a~~lG 225 (504)
--|.-.||..+|+.|...+-+..
T Consensus 298 ~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 298 SLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeccchhhHHHHHHHHHHc
Confidence 99999999999999988776664
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=10.75 E-value=1.2e+03 Score=23.54 Aligned_cols=138 Identities=20% Similarity=0.078 Sum_probs=86.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCcc--hhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCcccccccccccc
Q 043627 45 AVNTTYLLFSAYLVFAMQLGFAMLCAGSVR--AKNTMNIMLTNVLDAAAGALSYYLFGFAFAFGSPSNGFIGRHFFGLRD 122 (504)
Q Consensus 45 ~~d~~w~l~~~~lV~~M~~Gfalle~G~vr--~kn~~~il~k~~~~~~v~~i~~~~iGy~lafG~~~~~fiG~~~f~~~~ 122 (504)
.-|..+.++.+.+.|+--+||= +|+.- ...+..+++...+..+.+.+.|.++-|-. .|..
T Consensus 195 ~hn~~~~~lGt~lLW~GWfGFN---~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-~gk~-------------- 256 (385)
T 1u7g_A 195 PHNLPMVFTGTAILYIGWFGFN---AGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL-RGLP-------------- 256 (385)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHH---HGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSSC--------------
T ss_pred CCCHHHHHHHHHHHHHHHhhhc---chhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHHH-cCCC--------------
Confidence 4567888889988888888864 44332 23466778888999999999999986642 2210
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHhhhhhcccccceeecCCCccCCCCCCccccCCceee
Q 043627 123 VPSPLTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRSDNLLFGSGVID 202 (504)
Q Consensus 123 ~~~~~~~~~~~~fq~~Faa~a~tIvsGavaER~~~~~~li~~~l~~~~VYp~~ahWvW~~~GWL~~~~~~~~~~~lG~~D 202 (504)
+.. -..+.+.|- .....+-++-.++..-++..++ +++++..... +|. .++++.|
T Consensus 257 ------~~~-~~~nG~lAG---LVaITa~~~~v~p~~A~iiG~i-ag~i~~~~~~-------~l~--------~~l~iDD 310 (385)
T 1u7g_A 257 ------SLL-GACSGAIAG---LVGVTPACGYIGVGGALIIGVV-AGLAGLWGVT-------MLK--------RLLRVDD 310 (385)
T ss_dssp ------CHH-HHHHHHHHH---HHHHTTTTTTSCHHHHHHHHHH-HHHHHHHHHH-------HHH--------HHHCSCC
T ss_pred ------CHH-HHHHHHHHh---hhhhccCCCCCCHHHHHHHHhH-HHHHHHHHHH-------HHH--------HhCCCCC
Confidence 111 111222221 1222333456677777777753 4555433222 122 1478999
Q ss_pred ecCCchHhHHHHHHHHHHHHHHcC
Q 043627 203 FAGSGVVHMVGGIAGLWGALIEGP 226 (504)
Q Consensus 203 faGs~vVH~~gG~~aLv~a~~lGp 226 (504)
--+.-.||..+|+.|...+-+...
T Consensus 311 ~l~a~~vHgv~Gi~G~l~~glfa~ 334 (385)
T 1u7g_A 311 PCDVFGVHGVCGIVGCIMTGIFAA 334 (385)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCEeecccccHHHHHHHHHhcc
Confidence 999999999999999888777653
No 9
>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
Probab=6.62 E-value=9.9e+02 Score=22.93 Aligned_cols=53 Identities=9% Similarity=-0.038 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 043627 46 VNTTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFGF 101 (504)
Q Consensus 46 ~d~~w~l~~~~lV~~M~~Gfalle~G~vr~kn~~~il~k~~~~~~v~~i~~~~iGy 101 (504)
-++.|+....+.+.+ .-|.+++...+++|. .....-..+...++.+.|+...-
T Consensus 30 ~~s~Wlw~~~a~m~~--~vF~~l~~~~~~~~~-R~~~~l~~lit~IAai~Yf~Ma~ 82 (274)
T 2jaf_A 30 SSSLWVNVALAGIAI--LVFVYMGRTIRPGRP-RLIWGATLMIPLVSISSYLGLLS 82 (274)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHTTTCCTTHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH--HHHHHHHhcccCCcc-eehhHHHHHHHHHHHHHHHHHHH
Confidence 345676555444444 666666666555443 34445555556777888877643
No 10
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=6.07 E-value=7.8e+02 Score=23.58 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HhcCcchhh------HHHHHHHHHHHHHHHHHHHHHhhh
Q 043627 48 TTYLLFSAYLVFAMQLGFAML--CAGSVRAKN------TMNIMLTNVLDAAAGALSYYLFGF 101 (504)
Q Consensus 48 ~~w~l~~~~lV~~M~~Gfall--e~G~vr~kn------~~~il~k~~~~~~v~~i~~~~iGy 101 (504)
..|++.|.++|++-..-.++. -.-.-+++. ....++-...-+....+.||.+||
T Consensus 260 ~~~~~~~~~~v~~sll~~v~v~~l~~~~~~~~a~~~p~w~r~~fp~~f~~~~~i~~~~~~~~ 321 (321)
T 3tlw_A 260 GAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFFGF 321 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCccccccccChhheeeehHHHHHHHHHHHhhhccC
Confidence 378888888887765443322 111111111 123334444455677778888776
Done!