BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043630
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 152/313 (48%), Gaps = 27/313 (8%)
Query: 61 IIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRA 120
++V +G G TV AV PE++ R I I GVYRE V VP+ K I F+G +
Sbjct: 9 VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR-- 66
Query: 121 SETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVA 180
+ T+I+ D + T+ SA+V+ F A ITF NT G QAVA
Sbjct: 67 TSTIITASKNVQDGST------TFNSATVAAVGAGFLARDITFQNTA----GAAKHQAVA 116
Query: 181 LRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIA 240
LR+ D + Y+ +L QD+L + +F C I G++DFIFG A + QDC + +
Sbjct: 117 LRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARR 176
Query: 241 EKSG---AIAAHHRDIPDDSSGFSFVNCVINGTGKI---------YLGRAWGNYSRIIYS 288
SG + A R P+ ++G I T + YLGR W YSR +
Sbjct: 177 PGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVM 236
Query: 289 YSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSW--LKSL-SYEEVQPF 345
S + ++I P GW W+ + T+ +GEYQ +G GA S R +W K + S E Q F
Sbjct: 237 QSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGF 296
Query: 346 LNVTFIDGKEWLR 358
+FI G WL+
Sbjct: 297 TPGSFIAGGSWLK 309
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 146/314 (46%), Gaps = 31/314 (9%)
Query: 62 IVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRAS 121
+V ++G G T+ AV P+ + R IY+ G Y+E V V NK + +G A
Sbjct: 6 VVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYA- 64
Query: 122 ETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVAL 181
T I+ D + T++SA+++ F I NT G QAVAL
Sbjct: 65 -TTITGSLNVVDGST------TFRSATLAAVGQGFILQDICIQNTA----GPAKDQAVAL 113
Query: 182 RLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAE 241
R+ D +++ + ++ QDTL + ++ ++ G++DFIFG A ++Q C Q +A
Sbjct: 114 RVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKC--QLVAR 171
Query: 242 KSGA-----IAAHHRDIPDDSSGFSFVNCVINGTGKI---------YLGRAWGNYSRIIY 287
K G + A R P+ ++G S C I + + YLGR W YSR +
Sbjct: 172 KPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVV 231
Query: 288 SYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHR---PSWLKSLSYEEVQP 344
SYL +I P GW++W+ + +T+ +GE+ +G GA S R P + + P
Sbjct: 232 MESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMP 291
Query: 345 FLNVTFIDGKEWLR 358
F I G WLR
Sbjct: 292 FTVAKLIQGGSWLR 305
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 18/180 (10%)
Query: 68 GGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISW 127
G S++ A+ P++++ + I++ GVY E++ V ++ +++ G + TVI
Sbjct: 41 GDEFSSINAALKSAPKDDTPFI-IFLKNGVYTERLEVARS--HVTLKGENRDG--TVIGA 95
Query: 128 HNKASDKDSNGIELGTYKSASVSVFADFFCATGITFAN---------TVVAVPGGI-GMQ 177
+ A + G + GT S++V V A F A +T N P + Q
Sbjct: 96 NTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQ 155
Query: 178 AVALRLA--GDKAMLYKVKVLGTQDTLLDDTGSH-YFYQCHIQGSIDFIFGRARSLYQDC 234
AVAL LA DKA VK+ G QDTL TGS YF C I G +DFIFG +++ +C
Sbjct: 156 AVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNC 215
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 73 TVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKAS 132
T+ A+ P ++ V I I GVY E++T+ +N ++ E R + + +
Sbjct: 20 TIADAIASAPAGSTPFV-ILIKNGVYNERLTITRNNLHLK---GESRNGAVIAAATAAGT 75
Query: 133 DKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIG-----------MQAVAL 181
K S+G + GT S+++++ A F A +T N P QAVAL
Sbjct: 76 LK-SDGSKWGTAGSSTITISAKDFSAQSLTIRNDF-DFPANQAKSDSDSSKIKDTQAVAL 133
Query: 182 RL--AGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQS 238
+ +GD+A V ++G QDTL G +F C I G++DFIFG +L+ +C L S
Sbjct: 134 YVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVS 192
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 73 TVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKAS 132
T+ A+ P ++ V I I GVY E++T+ +N ++ E R + + +
Sbjct: 20 TIADAIASAPAGSTPFV-ILIKNGVYNERLTITRNNLHLK---GESRNGAVIAAATAAGT 75
Query: 133 DKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIG-----------MQAVAL 181
K S+G + GT S+++++ A F A +T N P QAVAL
Sbjct: 76 LK-SDGSKWGTAGSSTITISAKDFSAQSLTIRNDF-DFPANQAKSDSDSSKIKDTQAVAL 133
Query: 182 RL--AGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQS 238
+ +GD+A V ++G QDTL G +F C I G++DFIFG +L+ +C L S
Sbjct: 134 YVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVS 192
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 73 TVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKAS 132
T+ A+ P ++ V I I GVY E++T+ +N ++ E R + + +
Sbjct: 20 TIADAIASAPAGSTPFV-ILIKNGVYNERLTITRNNLHLK---GESRNGAVIAAATAAGT 75
Query: 133 DKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIG-----------MQAVAL 181
K S+G + GT S+++++ A F A +T N P QAVAL
Sbjct: 76 LK-SDGSKWGTAGSSTITISAKDFSAQSLTIRNDF-DFPANQAKSDSDSSKIKDTQAVAL 133
Query: 182 RL--AGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQS 238
+ +GD+A V ++G Q TL G +F C I G++DFIFG +L+ +C L S
Sbjct: 134 YVTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVS 192
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
Length = 422
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 96/253 (37%), Gaps = 47/253 (18%)
Query: 72 STVQGAVDL-VPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVI----- 125
+T+Q AVD + + ++R I ++PG Y+ V VP I+ G ++ + I
Sbjct: 90 TTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLD 149
Query: 126 -----------------------SWHNKASDKDSNGIELGTYKSASVSVFADFFCATGIT 162
+W+ S + +G SA + +T
Sbjct: 150 GGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLT 209
Query: 163 FANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDT-LLDDTGSH-----------Y 210
NT+ AVALR GD+ + V +LG Q+T + ++G
Sbjct: 210 IENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTL 269
Query: 211 FYQCHIQGSIDFIFGRARSLYQDC---VLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVI 267
+I+G +D + GR ++ + V+ S ++ + A + + GF VN
Sbjct: 270 VTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPAT-LSNIYYGFLAVNSRF 328
Query: 268 N--GTGKIYLGRA 278
N G G LGR+
Sbjct: 329 NAFGDGVAQLGRS 341
>pdb|3GP7|A Chain A, Staphylococcal Enterotoxin B Mutant N23yk97sk98s
pdb|3GP7|B Chain B, Staphylococcal Enterotoxin B Mutant N23yk97sk98s
Length = 239
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 199 QDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDI 253
+D +D G++Y+YQC+ S + I + C+ + E +G +R I
Sbjct: 78 KDKYVDVFGANYYYQCYFSSSTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSI 132
>pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
C-Terminal Deletion Mutant Complexed With Estradiol And
Nadp+
Length = 289
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 152 FADFFCAT-----GITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDT 206
F D +CA+ G+ + V+ +P G+ + + G + KVLG+ + +LD T
Sbjct: 151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIE---CGPVHTAFMEKVLGSPEEVLDRT 207
Query: 207 GSHYFYQ 213
H F++
Sbjct: 208 DIHTFHR 214
>pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
Complexed With 17- Beta-Estradiol
pdb|1FDT|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
Complexed With Estradiol And Nadp+
pdb|3KLM|X Chain X, 17beta-Hsd1 In Complex With Dht
Length = 327
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 152 FADFFCAT-----GITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDT 206
F D +CA+ G+ + V+ +P G+ + + G + KVLG+ + +LD T
Sbjct: 151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIE---CGPVHTAFMEKVLGSPEEVLDRT 207
Query: 207 GSHYFYQ 213
H F++
Sbjct: 208 DIHTFHR 214
>pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed
17-beta- Estradiol
Length = 327
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 152 FADFFCAT-----GITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDT 206
F D +CA+ G+ + V+ +P G+ + + G + KVLG+ + +LD T
Sbjct: 151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIE---CGPVHTAFMEKVLGSPEEVLDRT 207
Query: 207 GSHYFYQ 213
H F++
Sbjct: 208 DIHTFHR 214
>pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
pdb|1EQU|B Chain B, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
pdb|1DHT|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dihydrotestosterone
pdb|3DHE|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dehydroepiandrosterone
pdb|1I5R|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Em1745 Complex
pdb|1JTV|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase
Type 1 Complexed With Testosterone
pdb|1QYV|A Chain A, Crystal Structure Of Human Estrogenic
17beta-hydroxysteroid Dehydrogenase Complex With Nadp
pdb|1QYW|A Chain A, Crystal Structure Of Human Estrogenic
17beta-hydroxysteroid Dehydrogenase Comlex With
Androstanedione And Nadp
pdb|1QYX|A Chain A, Crystal Structure Of Human Estrogenic
17beta-Hydroxysteroid Dehydrogenase Complex With
Androstenedione And Nadp
pdb|1BHS|A Chain A, Human Estrogenic 17beta-hydroxysteroid Dehydrogenase
pdb|3DEY|X Chain X, Crystal Structure Of 17beta-Hsd1 With Dht In Normal And
Reverse Orientation.
pdb|3HB4|X Chain X, 17beta-Hydroxysteroid Dehydrogenase Type1 Complexed With
E2b
pdb|3HB5|X Chain X, Binary And Ternary Crystal Structures Of A Novel Inhibitor
Of 17 Beta-Hsd Type 1: A Lead Compound For Breast Cancer
Therapy
pdb|3KLP|X Chain X, 17beta-Hsd1 In Complex With A-Diol
pdb|3KM0|A Chain A, 17betahsd1 In Complex With 3beta-Diol
pdb|3KM0|B Chain B, 17betahsd1 In Complex With 3beta-Diol
Length = 327
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 152 FADFFCAT-----GITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDT 206
F D +CA+ G+ + V+ +P G+ + + G + KVLG+ + +LD T
Sbjct: 151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIE---CGPVHTAFMEKVLGSPEEVLDRT 207
Query: 207 GSHYFYQ 213
H F++
Sbjct: 208 DIHTFHR 214
>pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221q Complexed With Estradiol
Length = 327
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 152 FADFFCAT-----GITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDT 206
F D +CA+ G+ + V+ +P G+ + + G + KVLG+ + +LD T
Sbjct: 151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIE---CGPVHTAFMEKVLGSPEEVLDRT 207
Query: 207 GSHYFYQ 213
H F++
Sbjct: 208 DIHTFHR 214
>pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDV|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
Length = 327
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 152 FADFFCAT-----GITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDT 206
F D +CA+ G+ + V+ +P G+ + + G + KVLG+ + +LD T
Sbjct: 151 FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIE---CGPVHTAFMEKVLGSPEEVLDRT 207
Query: 207 GSHYFYQ 213
H F++
Sbjct: 208 DIHTFHR 214
>pdb|1GOZ|A Chain A, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
pdb|1GOZ|B Chain B, Structural Basis For The Altered T-Cell Receptor Binding
Specificty In A Superantigenic Staphylococcus Aureus
Enterotoxin-B Mutant
Length = 239
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 199 QDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDI 253
+D +D G++Y+YQC+ + I + C+ + E +G +R I
Sbjct: 78 KDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKSCMYGGVTEHNGNQLDKYRSI 132
>pdb|2SEB|D Chain D, X-Ray Crystal Structure Of Hla-Dr4 Complexed With A
Peptide From Human Collagen Ii
pdb|1SBB|B Chain B, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SBB|D Chain D, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1D5M|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With Peptide
And Seb
pdb|1D5X|C Chain C, X-ray Crystal Structure Of Hla-dr4 Complexed With
Dipeptide Mimetic And Seb
pdb|1D5Z|C Chain C, X-Ray Crystal Structure Of Hla-Dr4 Complexed With
Peptidomimetic And Seb
pdb|1D6E|C Chain C, Crystal Structure Of Hla-Dr4 Complex With Peptidomimetic
And Seb
pdb|1SE3|A Chain A, Staphylococcal Enterotoxin B Complexed With Gm3
Trisaccharide
pdb|1SE4|A Chain A, Staphylococcal Enterotoxin B Complexed With Lactose
pdb|3R8B|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|C Chain C, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|E Chain E, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|G Chain G, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|I Chain I, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|K Chain K, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|M Chain M, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|O Chain O, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
Length = 239
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 199 QDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDI 253
+D +D G++Y+YQC+ + I + C+ + E +G +R I
Sbjct: 78 KDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSI 132
>pdb|3SEB|A Chain A, Staphylococcal Enterotoxin B
Length = 238
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 199 QDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDI 253
+D +D G++Y+YQC+ + I + C+ + E +G +R I
Sbjct: 78 KDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSI 132
>pdb|1SEB|D Chain D, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
pdb|1SEB|H Chain H, Complex Of The Human Mhc Class Ii Glycoprotein Hla-Dr1 And
The Bacterial Superantigen Seb
Length = 234
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 199 QDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDI 253
+D +D G++Y+YQC+ + I + C+ + E +G +R I
Sbjct: 77 KDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSI 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,419,436
Number of Sequences: 62578
Number of extensions: 500084
Number of successful extensions: 1138
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1114
Number of HSP's gapped (non-prelim): 24
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)