BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043633
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PYW|A Chain A, Structure Of A. Thaliana 5-Methylthioribose Kinase In
Complex With Adp And Mtr
pdb|2PYW|B Chain B, Structure Of A. Thaliana 5-Methylthioribose Kinase In
Complex With Adp And Mtr
Length = 420
Score = 166 bits (420), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 96/125 (76%)
Query: 1 EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFH 60
EYK+WILRTIE+TW LF+++F ALW Q+KDG GEAYL +IYN E+ + VQE +M++L H
Sbjct: 294 EYKQWILRTIEQTWNLFNKRFIALWDQNKDGPGEAYLADIYNNTEVLKFVQENYMRNLLH 353
Query: 61 DTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQXXXXXXXXXXXXXNFQAITEVV 120
D+LGFGAAKMIRRIVGVAHVEDFESI++D +RA CER F++I EVV
Sbjct: 354 DSLGFGAAKMIRRIVGVAHVEDFESIEEDKRRAICERSALEFAKMLLKERRKFKSIGEVV 413
Query: 121 SAIRK 125
SAI++
Sbjct: 414 SAIQQ 418
>pdb|2OLC|A Chain A, Crystal Structure Of 5-Methylthioribose Kinase In Complex
With Adp-2ho
pdb|2OLC|B Chain B, Crystal Structure Of 5-Methylthioribose Kinase In Complex
With Adp-2ho
pdb|2PU8|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PU8|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUI|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUI|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUL|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUL|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUN|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUN|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUP|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUP|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
Length = 397
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Query: 3 KEWILRTIEETWTLFHQKFTALWHQHK---DGSGEAYLPEIYNKPELQQLVQEKFMKDLF 59
+E + + + W F + F+ W + + + YL + + +F
Sbjct: 282 REPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDT--------------LSHIF 327
Query: 60 HDTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQXXXXXXXXXXXXXNFQAITEV 119
+ +GF ++IRR +G+AHV D ++I KR +R F+ IT+V
Sbjct: 328 EEAIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDV 387
Query: 120 VSAIRKL 126
+ + L
Sbjct: 388 IELFKLL 394
>pdb|1IQC|A Chain A, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
Europaea
pdb|1IQC|B Chain B, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
Europaea
pdb|1IQC|C Chain C, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
Europaea
pdb|1IQC|D Chain D, Crystal Structure Of Di-Heme Peroxidase From Nitrosomonas
Europaea
Length = 308
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 2 YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
+K LR IE T+ FH A Q + G L +NK E+ ++V F+K L D
Sbjct: 228 FKVPTLRNIELTYPYFHDGGAATLEQAVETMGRIQLNREFNKDEVSKIV--AFLKTLTGD 285
Query: 62 TLGF 65
F
Sbjct: 286 QPDF 289
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 34 EAYLPEIYNKPELQQLVQEKFMKDLF 59
EAYLPE + +P++ V E F++D +
Sbjct: 96 EAYLPETFRRPQIDPAV-EGFIRDKY 120
>pdb|3GQ2|A Chain A, Crystal Structure Of The Dimer Of The P115 Tether Globular
Head Domain
pdb|3GQ2|B Chain B, Crystal Structure Of The Dimer Of The P115 Tether Globular
Head Domain
pdb|3GRL|A Chain A, Crystal Structure Of The Monomer Of The P115 Tether
Globular Head Domain
Length = 651
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 39 EIYNKPELQQLVQEKFMKDLFHDTLGF 65
E Y K +L+QL++++ K+ F + LGF
Sbjct: 557 ETYMKEKLKQLIEKRIGKENFIEKLGF 583
>pdb|3R0A|A Chain A, Possible Transcriptional Regulator From Methanosarcina
Mazei Go1 (gi 21227196)
pdb|3R0A|B Chain B, Possible Transcriptional Regulator From Methanosarcina
Mazei Go1 (gi 21227196)
Length = 123
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 26 HQHKDGSGEAYLPEIYNKPELQQLVQE 52
Q+ DG G Y+ +IY+K +++ ++Q+
Sbjct: 76 QQNLDGGGYVYIYKIYSKNQIRNIIQK 102
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 63 LGFGAAKMIRRIVGVAHVEDFESIK 87
+GFG K I R VGV E F IK
Sbjct: 81 MGFGINKSIDRYVGVLDSERFSGIK 105
>pdb|2W3C|A Chain A, Globular Head Region Of The Human General Vesicular
Transport Factor P115
Length = 577
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 39 EIYNKPELQQLVQEKFMKDLFHDTLGF 65
E Y K +L+QL++++ K+ F + LGF
Sbjct: 505 ESYMKEKLKQLIEKRIGKENFIEKLGF 531
>pdb|2APO|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Cbf5
Nop10 Complex
Length = 357
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 14 WTLFHQKFTALWHQHKDGSGEAYL-------PEIYNKPELQQLVQEKF 54
W + +++ L H H+D S E L IY +P L+ V+ +
Sbjct: 123 WHIPPKEYVCLMHLHRDASEEDILRVFKEFTGRIYQRPPLKAAVKRRL 170
>pdb|1KWB|B Chain B, Crystal Structure Of The His145ala Mutant Of
2,3-Dihydroxybipheny Dioxygenase (Bphc)
pdb|1KWC|B Chain B, The His145ala Mutant Of 2,3-Dihydroxybiphenyl Dioxygenase
In Complex With 2,3-Dihydroxybiphenyl
Length = 292
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 5 WILRTIEETWTLFHQKFTALWHQHKDGSGE 34
W RT++ +WT+ TA+W HK G+
Sbjct: 263 WGPRTVDSSWTVARHSRTAMW-GHKSVRGQ 291
>pdb|1EIQ|A Chain A, 2,3-dihydroxybiphenyl-1,2-dioxygenase
pdb|1EIR|A Chain A, 2,3-Dihydroxybiphenyl-1,2-Dioxygenase
pdb|1EIL|A Chain A, 2,3-Dihydroxybiphenyl-1,2-Dioxygenase
pdb|1KW3|B Chain B, Crystal Structure Of 2,3-Dihydroxybiphenyal Dioxygenase
(Bphc) At 1.45 A Resolution
pdb|1KW6|B Chain B, Crystal Structure Of 2,3-Dihydroxybiphenyl Dioxygenase
(Bphc) In Complex With 2,3-Dihydroxybiphenyl At 1.45 A
Resolution
pdb|1KW8|B Chain B, Crystal Structure Of Bphc-2,3-Dihydroxybiphenyl-No Complex
pdb|1KW9|B Chain B, Crystal Structure Of 2,3-Dihydroxybiphenyl Dioxygenase
(Bphc) In Complex With 2,3-Dihydroxybiphenyl At 2.0a
Resolution
pdb|1DHY|A Chain A, Kks102 Bphc Enzyme
Length = 292
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 5 WILRTIEETWTLFHQKFTALWHQHKDGSGE 34
W RT++ +WT+ TA+W HK G+
Sbjct: 263 WGPRTVDSSWTVARHSRTAMW-GHKSVRGQ 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,506,936
Number of Sequences: 62578
Number of extensions: 126200
Number of successful extensions: 334
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 16
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)