Your job contains 1 sequence.
>043634
MATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV
FVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRN
Q
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043634
(121 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195311 - symbol:AT1G09230 species:3702 "Arabi... 314 3.9e-28 1
ZFIN|ZDB-GENE-060312-35 - symbol:rnpc3 "RNA-binding regio... 137 2.1e-08 1
RGD|1582776 - symbol:Rnpc3 "RNA-binding region (RNP1, RRM... 126 3.4e-07 1
UNIPROTKB|Q3MHP0 - symbol:RNPC3 "RNA-binding protein 40" ... 126 3.4e-07 1
UNIPROTKB|F1MJQ8 - symbol:RNPC3 "RNA-binding protein 40" ... 125 4.3e-07 1
MGI|MGI:1914475 - symbol:Rnpc3 "RNA-binding region (RNP1,... 123 7.1e-07 1
UNIPROTKB|A8K1C9 - symbol:RNPC3 "cDNA FLJ77710" species:9... 123 7.1e-07 1
UNIPROTKB|Q96LT9 - symbol:RNPC3 "RNA-binding protein 40" ... 123 7.2e-07 1
UNIPROTKB|F1PE39 - symbol:RNPC3 "Uncharacterized protein"... 123 7.2e-07 1
UNIPROTKB|F1S572 - symbol:LOC100522864 "Uncharacterized p... 115 5.2e-06 1
UNIPROTKB|F1NVY1 - symbol:RNPC3 "Uncharacterized protein"... 112 1.0e-05 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 93 0.00010 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 93 0.00010 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 102 0.00021 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 89 0.00027 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 100 0.00029 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 99 0.00036 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 96 0.00037 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 96 0.00037 1
MGI|MGI:2444923 - symbol:Rbm41 "RNA binding motif protein... 96 0.00042 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 98 0.00043 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 98 0.00047 1
SGD|S000001919 - symbol:PES4 "Poly(A) binding protein, su... 97 0.00056 1
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 93 0.00061 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 96 0.00074 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 92 0.00079 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 89 0.00079 1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 92 0.00085 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 94 0.00099 1
>TAIR|locus:2195311 [details] [associations]
symbol:AT1G09230 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 KO:K13157 OMA:KESEYES HSSP:P09012 EMBL:AY091076
EMBL:AY122947 IPI:IPI00518543 RefSeq:NP_172394.1 UniGene:At.21135
UniGene:At.66808 ProteinModelPortal:Q8RWV8 SMR:Q8RWV8 IntAct:Q8RWV8
EnsemblPlants:AT1G09230.1 GeneID:837443 KEGG:ath:AT1G09230
TAIR:At1g09230 HOGENOM:HOG000030409 InParanoid:Q8RWV8
PhylomeDB:Q8RWV8 ProtClustDB:CLSN2679239 ArrayExpress:Q8RWV8
Genevestigator:Q8RWV8 Uniprot:Q8RWV8
Length = 442
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 62/98 (63%), Positives = 75/98 (76%)
Query: 14 QETENL-VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQ 72
Q TE VTLL++HLPD IP D +SR+FS YGAS+VRPCS G+LRN FVDF NE ASQ
Sbjct: 21 QVTEPFGVTLLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQ 80
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSIS 110
A QLNGLRFLGKVL V+RA+KPN+ K + E +S++
Sbjct: 81 AHRQLNGLRFLGKVLQVQRANKPNDNKKSRQIE-ESVT 117
>ZFIN|ZDB-GENE-060312-35 [details] [associations]
symbol:rnpc3 "RNA-binding region (RNP1, RRM)
containing 3" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060312-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:55599 eggNOG:NOG128363
HOGENOM:HOG000007217 HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34
EMBL:BC114288 IPI:IPI00500928 RefSeq:NP_001035019.1
UniGene:Dr.79649 ProteinModelPortal:Q29RB3 GeneID:565672
KEGG:dre:565672 InParanoid:Q29RB3 NextBio:20885998
ArrayExpress:Q29RB3 Uniprot:Q29RB3
Length = 505
Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 36/108 (33%), Positives = 58/108 (53%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-GRLRNCVFVDFGNEPLASQA 73
+T+ TL+I+HLP + +D + ++GASSVR S G L++ F F +E AS+A
Sbjct: 10 QTKKSKTLIIRHLPRELSRDEKEDLLKYFGASSVRVLSEKGPLKHMAFATFSSETSASKA 69
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
+L+ LR LG+ L VE A +++ + +S AAV +
Sbjct: 70 LNRLHQLRILGRTLVVEFAK---DQDSASVLKDPPVSDRTAAAVAEKE 114
>RGD|1582776 [details] [associations]
symbol:Rnpc3 "RNA-binding region (RNP1, RRM) containing 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1582776
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005689
HSSP:Q96IZ5 CTD:55599 eggNOG:NOG128363 HOGENOM:HOG000007217
HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:AABR03021470 EMBL:AABR03019434
EMBL:AABR03018538 EMBL:AABR03019699 EMBL:BC098742 IPI:IPI00214747
RefSeq:NP_001094280.1 UniGene:Rn.17587 ProteinModelPortal:Q4G055
STRING:Q4G055 PRIDE:Q4G055 Ensembl:ENSRNOT00000023366 GeneID:691538
KEGG:rno:691538 UCSC:RGD:1582776 InParanoid:Q4G055 NextBio:743263
ArrayExpress:Q4G055 Genevestigator:Q4G055 Uniprot:Q4G055
Length = 515
Score = 126 (49.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERASKPNEENKHKHFEAQSISSMK 113
L+ LG L VE A + ++ H A + K
Sbjct: 88 LKLLGHTLVVEFAKE--QDRVHSSCPASNAEKKK 119
>UNIPROTKB|Q3MHP0 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC105165 IPI:IPI00706852
RefSeq:NP_001070585.1 UniGene:Bt.6645 HSSP:Q96IZ5
ProteinModelPortal:Q3MHP0 PRIDE:Q3MHP0 GeneID:768060
KEGG:bta:768060 CTD:55599 eggNOG:NOG128363 HOGENOM:HOG000007217
HOVERGEN:HBG057088 InParanoid:Q3MHP0 KO:K13157 OrthoDB:EOG46DM34
NextBio:20918415 Uniprot:Q3MHP0
Length = 516
Score = 126 (49.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRDLSDKGRLKHTAFATFPNEKTAVKALTRLHQ 87
Query: 80 LRFLGKVLSVERASKPNEENKHKHFEAQSISSMKE 114
L+ LG L VE A +E H S+ + K+
Sbjct: 88 LKLLGHTLVVEFA----KEQDRVHSPCPSLGTEKK 118
>UNIPROTKB|F1MJQ8 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9913 "Bos
taurus" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
IPI:IPI00706852 UniGene:Bt.6645 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:DAAA02007691
Ensembl:ENSBTAT00000025416 Uniprot:F1MJQ8
Length = 516
Score = 125 (49.1 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKTAVKALTRLHQ 87
Query: 80 LRFLGKVLSVERASKPNEENKHKHFEAQSISSMKE 114
L+ LG L VE A +E H S+ + K+
Sbjct: 88 LKLLGHTLVVEFA----KEQDRVHSPCPSLGTEKK 118
>MGI|MGI:1914475 [details] [associations]
symbol:Rnpc3 "RNA-binding region (RNP1, RRM) containing 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1914475 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005689 HSSP:Q96IZ5 CTD:55599 eggNOG:NOG128363
HOGENOM:HOG000007217 HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34
OMA:KESEYES EMBL:AK013288 EMBL:AK134241 EMBL:AK161063 EMBL:BC016603
EMBL:BC043695 EMBL:AK173272 IPI:IPI00831482 IPI:IPI00831582
RefSeq:NP_001033785.1 RefSeq:NP_080319.2 UniGene:Mm.316928
ProteinModelPortal:Q3UZ01 SMR:Q3UZ01 STRING:Q3UZ01
PhosphoSite:Q3UZ01 PRIDE:Q3UZ01 Ensembl:ENSMUST00000092154
Ensembl:ENSMUST00000106535 Ensembl:ENSMUST00000106536 GeneID:67225
KEGG:mmu:67225 UCSC:uc008rbd.1 UCSC:uc008rbf.1
GeneTree:ENSGT00530000063786 InParanoid:Q3UZ01 NextBio:323936
Bgee:Q3UZ01 CleanEx:MM_RNPC3 Genevestigator:Q3UZ01 Uniprot:Q3UZ01
Length = 514
Score = 123 (48.4 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERASK 94
L+ LG L VE A +
Sbjct: 88 LKLLGHTLVVEFAKE 102
>UNIPROTKB|A8K1C9 [details] [associations]
symbol:RNPC3 "cDNA FLJ77710" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000007217
HOVERGEN:HBG057088 EMBL:BX322653 EMBL:AC095032 EMBL:AC105272
UniGene:Hs.632423 HGNC:HGNC:18666 ChiTaRS:RNPC3 EMBL:AK289844
IPI:IPI00923554 SMR:A8K1C9 STRING:A8K1C9 Ensembl:ENST00000524631
UCSC:uc010oum.1 Uniprot:A8K1C9
Length = 516
Score = 123 (48.4 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERASK 94
L+ LG L VE A +
Sbjct: 88 LKLLGHTLVVEFAKE 102
>UNIPROTKB|Q96LT9 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IC] [GO:0005689
"U12-type spliceosomal complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097
GO:GO:0005689 CTD:55599 eggNOG:NOG128363 HOVERGEN:HBG057088
KO:K13157 OrthoDB:EOG46DM34 EMBL:AY099329 EMBL:BK005195
EMBL:AB058742 EMBL:AK000015 EMBL:AK057799 EMBL:BX322653
EMBL:AC095032 EMBL:AC105272 EMBL:BC010697 EMBL:AL137730
IPI:IPI00514393 PIR:T46396 RefSeq:NP_060089.1 UniGene:Hs.632423
PDB:3EGN PDBsum:3EGN ProteinModelPortal:Q96LT9 SMR:Q96LT9
IntAct:Q96LT9 MINT:MINT-1180654 STRING:Q96LT9 PhosphoSite:Q96LT9
DMDM:74760946 PaxDb:Q96LT9 PeptideAtlas:Q96LT9 PRIDE:Q96LT9
DNASU:55599 Ensembl:ENST00000423855 Ensembl:ENST00000531883
Ensembl:ENST00000533099 GeneID:55599 KEGG:hsa:55599 UCSC:uc010oul.1
GeneCards:GC01P104068 HGNC:HGNC:18666 neXtProt:NX_Q96LT9
PharmGKB:PA134865246 InParanoid:Q96LT9 OMA:KESEYES ChiTaRS:RNPC3
EvolutionaryTrace:Q96LT9 GenomeRNAi:55599 NextBio:60134
ArrayExpress:Q96LT9 Bgee:Q96LT9 CleanEx:HS_RNPC3
Genevestigator:Q96LT9 Uniprot:Q96LT9
Length = 517
Score = 123 (48.4 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERASK 94
L+ LG L VE A +
Sbjct: 88 LKLLGHTLVVEFAKE 102
>UNIPROTKB|F1PE39 [details] [associations]
symbol:RNPC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
CTD:55599 KO:K13157 OMA:KESEYES GeneTree:ENSGT00530000063786
EMBL:AAEX03004757 EMBL:AAEX03004758 RefSeq:XP_547257.3
Ensembl:ENSCAFT00000031786 GeneID:490136 KEGG:cfa:490136
Uniprot:F1PE39
Length = 518
Score = 123 (48.4 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 29 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 88
Query: 80 LRFLGKVLSVERASK 94
L+ LG L VE A +
Sbjct: 89 LKLLGHTLVVEFAKE 103
>UNIPROTKB|F1S572 [details] [associations]
symbol:LOC100522864 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:CU469487 EMBL:CU571185
Ensembl:ENSSSCT00000026127 Ensembl:ENSSSCT00000031693
Uniprot:F1S572
Length = 517
Score = 115 (45.5 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 32/98 (32%), Positives = 50/98 (51%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQ--AQMQL 77
TLL++HLP + + + ++GA SVR S GRL++ F F NE A + A +L
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKLKALTRL 87
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEA 115
+ L+ LG L VE A + ++ H + S K +
Sbjct: 88 HQLKLLGHTLVVEFAKE--QDQVHSPCPSSSTEKKKRS 123
>UNIPROTKB|F1NVY1 [details] [associations]
symbol:RNPC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
OMA:KESEYES GeneTree:ENSGT00530000063786 EMBL:AADN02012921
IPI:IPI00590374 Ensembl:ENSGALT00000008292 Uniprot:F1NVY1
Length = 490
Score = 112 (44.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-GRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + H+GA +VR S GRL++ F F +E A +A +L+
Sbjct: 5 TLLVRHLPAELTVAEKEDLLQHFGAVAVRVLSDHGRLKHTAFATFPSENAAVKALSRLHQ 64
Query: 80 LRFLGKVLSVERASK 94
L+ LG L VE A +
Sbjct: 65 LKLLGHTLVVEFAKE 79
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 28/80 (35%), Positives = 38/80 (47%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
++ + + P +D L FS G S+VR C GR R FV+F E A +A Q
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 77 LNGLRFLGKVLSVERASKPN 96
NG+ F G+ L V A N
Sbjct: 65 FNGVDFNGRALRVNLAQNRN 84
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 28/80 (35%), Positives = 38/80 (47%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
++ + + P +D L FS G S+VR C GR R FV+F E A +A Q
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 77 LNGLRFLGKVLSVERASKPN 96
NG+ F G+ L V A N
Sbjct: 65 FNGVDFNGRALRVNLAQNRN 84
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 102 (41.0 bits), Expect = 0.00021, P = 0.00021
Identities = 31/95 (32%), Positives = 47/95 (49%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSV-RPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++ + D +F YG +SS+ R G+ R FV+F + AS+A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 74 QMQLNGLRFLGKVLSVERASKPNE--ENKHKHFEA 106
+LN F G+ L V RA K +E E K +EA
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEA 334
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVR-PCS--AGRLRNCVFVDFGNEPLASQAQ 74
+ ++ + + P ++ L FS G ++VR C GR R F++F E A +A
Sbjct: 4 IFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAV 63
Query: 75 MQLNGLRFLGKVLSVERASK 94
Q+NG F G+ L V A+K
Sbjct: 64 EQMNGAEFNGRPLRVNLANK 83
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 100 (40.3 bits), Expect = 0.00029, P = 0.00029
Identities = 31/105 (29%), Positives = 50/105 (47%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQ 72
T + +K+LP I +D L + F +G S V +G R FV+F A+
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 73 AQMQLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSISSMKEA 115
A ++NG+ VL V RA K +E E + FE + I+ +++
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKS 329
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 33/108 (30%), Positives = 49/108 (45%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSA--GRLRNCVFVDFGNEPLASQA 73
+ + IK+ + + D L IFS YG A S+R + G+ R FV F A +A
Sbjct: 188 KEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRA 247
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
++NG GK++ V RA K E + MK+ +TR Q
Sbjct: 248 VDEMNGKEMNGKLIYVGRAQKKVERQTELK---RKFEQMKQDRMTRYQ 292
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 96 (38.9 bits), Expect = 0.00037, P = 0.00037
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + D L +FS YG + SV+ S+G+ + FV + A
Sbjct: 193 RDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 96 (38.9 bits), Expect = 0.00037, P = 0.00037
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D I + L ++FS YG + SV+ + G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A ++L+G GKVL V RA K E
Sbjct: 253 QKAVLELHGKSIDGKVLCVGRAQKKIE 279
>MGI|MGI:2444923 [details] [associations]
symbol:Rbm41 "RNA binding motif protein 41" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2444923 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q96IZ5 GeneTree:ENSGT00530000063786 CTD:55285 eggNOG:NOG147711
HOGENOM:HOG000231401 HOVERGEN:HBG057264 EMBL:AK040213 EMBL:AK084514
EMBL:AK084629 EMBL:AK164496 EMBL:AK166005 EMBL:AL672270
EMBL:BC037024 IPI:IPI00170384 IPI:IPI00460072 IPI:IPI00652894
IPI:IPI00798583 RefSeq:NP_001165618.1 RefSeq:NP_001165619.1
RefSeq:NP_705814.1 UniGene:Mm.256670 ProteinModelPortal:Q8JZV4
SMR:Q8JZV4 PhosphoSite:Q8JZV4 PRIDE:Q8JZV4
Ensembl:ENSMUST00000033810 Ensembl:ENSMUST00000087400
Ensembl:ENSMUST00000113007 GeneID:237073 KEGG:mmu:237073
UCSC:uc009ukp.2 UCSC:uc009ukq.2 UCSC:uc012hpl.1 NextBio:383213
Bgee:Q8JZV4 CleanEx:MM_RBM41 Genevestigator:Q8JZV4
GermOnline:ENSMUSG00000031433 Uniprot:Q8JZV4
Length = 413
Score = 96 (38.9 bits), Expect = 0.00042, P = 0.00042
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQL 77
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA Q+
Sbjct: 311 LYLKNLSPRVKERDLISLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQI 370
Query: 78 NGLRFLGKVLSVERASKPNEEN 99
NG + GK+L +E A +++
Sbjct: 371 NGYKLYGKILVIEFAKSKKQQS 392
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 98 (39.6 bits), Expect = 0.00043, P = 0.00043
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 11 QNKQETENL---VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFG 65
Q KQE +N V L +K+L D+I D L +FS YG +S + + + + FV F
Sbjct: 282 QMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFS 341
Query: 66 NEPLASQAQMQLNGLRFLG-KVLSVERASKPNEENK 100
+ A++A ++NG R +G K L V A + EE K
Sbjct: 342 SPEEATKAVTEMNG-RIVGTKPLYVALAQR-KEERK 375
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 98 (39.6 bits), Expect = 0.00047, P = 0.00047
Identities = 32/111 (28%), Positives = 50/111 (45%)
Query: 11 QNKQET--ENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFG 65
Q+K E N + IK+L I + S +F +G + S+ + R FV++
Sbjct: 250 QSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYA 309
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSISSMKE 114
N A +A +LN + GK L V RA K +E E K +E + M +
Sbjct: 310 NHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNK 360
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 97 (39.2 bits), Expect = 0.00056, P = 0.00056
Identities = 31/108 (28%), Positives = 55/108 (50%)
Query: 12 NKQETENLVT-----LLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNC-VFVDF 64
N +E++N+ + + IK+LP +D + FS G S+ +A +++ FV +
Sbjct: 290 NDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLWAFVTY 349
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
N + +A + N F GK L V RA ++E + K E+Q IS++
Sbjct: 350 KNSSDSEKAIKRYNNFYFRGKKLLVTRAQ--DKEERAKFIESQKISTL 395
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 93 (37.8 bits), Expect = 0.00061, P = 0.00061
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ N A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEEN 99
NGLR K + V A +P+ E+
Sbjct: 82 NGLRLQSKTIKVSVA-RPSSES 102
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 96 (38.9 bits), Expect = 0.00074, P = 0.00074
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 11 QNKQETEN---LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
Q + T N + +K+L ++ D L F YG ++ V G+ + FV+F
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
N A++A LNG +F K V RA K +E + + ++KEAA
Sbjct: 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSE--RETELRVRYEQNLKEAA 312
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 92 (37.4 bits), Expect = 0.00079, P = 0.00079
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ N A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSFA-RPSSE 101
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 89 (36.4 bits), Expect = 0.00080, P = 0.00079
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 29 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 88
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 89 QKAVLDLHGKSIDGKVLYVGRAQKKIE 115
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 92 (37.4 bits), Expect = 0.00085, P = 0.00085
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQ 72
++ L++ +LP + QD L +FS G A +R AG FV++ N A +
Sbjct: 31 DSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAER 90
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEEN 99
A LNGLR K + V A +P+ ++
Sbjct: 91 AISTLNGLRLQSKTIKVSYA-RPSSDS 116
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 94 (38.1 bits), Expect = 0.00099, P = 0.00099
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQA 73
++ + +K+L + + D L +FS YG S V GR R FV+F N A +A
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKA 258
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENK 100
L GL+ K L V +A K +E +
Sbjct: 259 MESLCGLQLGSKKLFVGKALKKDERRE 285
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.128 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 121 121 0.00091 102 3 11 23 0.38 31
29 0.49 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 523 (56 KB)
Total size of DFA: 108 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.11u 0.10s 12.21t Elapsed: 00:00:01
Total cpu time: 12.11u 0.10s 12.21t Elapsed: 00:00:01
Start: Fri May 10 10:43:11 2013 End: Fri May 10 10:43:12 2013