BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043634
(121 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357508623|ref|XP_003624600.1| RNA-binding protein [Medicago truncatula]
gi|355499615|gb|AES80818.1| RNA-binding protein [Medicago truncatula]
Length = 492
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/106 (70%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLAS 71
N E+ TLLIKHLPDAIP DTLSR+ SHYGASSVRPCSAGRLRNC FVDF N+ LAS
Sbjct: 18 NPCTVESPATLLIKHLPDAIPHDTLSRLLSHYGASSVRPCSAGRLRNCAFVDFKNDMLAS 77
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
QAQ QLNGL+FLGKVLS ERA KPN EN K AQ K +AV
Sbjct: 78 QAQRQLNGLKFLGKVLSAERAGKPN-ENVGKSSGAQLGKDSKTSAV 122
>gi|359477912|ref|XP_002270244.2| PREDICTED: RNA-binding protein 40-like [Vitis vinifera]
gi|298205172|emb|CBI17231.3| unnamed protein product [Vitis vinifera]
Length = 463
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 84/104 (80%), Gaps = 3/104 (2%)
Query: 1 MATAPFDSGP--QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRN 58
MA+ P GP Q+ + ++ TLLI+HLP+AIPQDTLSR+FS YGASSVRPC++GRLRN
Sbjct: 1 MASQPM-LGPRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPCTSGRLRN 59
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHK 102
C FVDF +E LASQA QLNGLRFLGKVL VERA+KP E++K K
Sbjct: 60 CAFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPTEDDKQK 103
>gi|359478163|ref|XP_003632078.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Vitis
vinifera]
Length = 463
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 83/104 (79%), Gaps = 3/104 (2%)
Query: 1 MATAPFDSGP--QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRN 58
MA+ P GP Q+ + ++ TLLI+HLP+AIPQDTLSR+FS YGASSVRP ++GRLRN
Sbjct: 1 MASQPM-LGPRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPSTSGRLRN 59
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHK 102
C FVDF +E LASQA QLNGLRFLGKVL VERA+KP E++K K
Sbjct: 60 CAFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPTEDDKQK 103
>gi|297743790|emb|CBI36673.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 83/104 (79%), Gaps = 3/104 (2%)
Query: 1 MATAPFDSGP--QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRN 58
MA+ P GP Q+ + ++ TLLI+HLP+AIPQDTLSR+FS YGASSVRP ++GRLRN
Sbjct: 1 MASQPM-LGPRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPSTSGRLRN 59
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHK 102
C FVDF +E LASQA QLNGLRFLGKVL VERA+KP E++K K
Sbjct: 60 CAFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPTEDDKQK 103
>gi|297849226|ref|XP_002892494.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297338336|gb|EFH68753.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 68/86 (79%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
VTLL++HLPD IP D +SR+FS YGAS+VRPCS G+LRN FVDF NE ASQA QLNG
Sbjct: 28 VTLLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNG 87
Query: 80 LRFLGKVLSVERASKPNEENKHKHFE 105
LRFLGKVL V+RA+KPNE K + E
Sbjct: 88 LRFLGKVLQVQRANKPNENKKSRQIE 113
>gi|15217461|ref|NP_172394.1| U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Arabidopsis
thaliana]
gi|20258828|gb|AAM13896.1| unknown protein [Arabidopsis thaliana]
gi|21689717|gb|AAM67480.1| unknown protein [Arabidopsis thaliana]
gi|332190295|gb|AEE28416.1| U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Arabidopsis
thaliana]
Length = 442
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
VTLL++HLPD IP D +SR+FS YGAS+VRPCS G+LRN FVDF NE ASQA QLNG
Sbjct: 28 VTLLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNG 87
Query: 80 LRFLGKVLSVERASKPNEENKHKHFE 105
LRFLGKVL V+RA+KPN+ K + E
Sbjct: 88 LRFLGKVLQVQRANKPNDNKKSRQIE 113
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--------VRPCSAGRLRNCVFVDFGNEPLAS 71
V L IK+L + D IF SS VR GR+R F+ F + +A
Sbjct: 352 VVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAH 411
Query: 72 QAQMQLNGLRFLGKVLSVE-----RASKPNE 97
+A +NG F GK + ++ A+KPNE
Sbjct: 412 RALNLVNGFVFKGKPMIIQFGRTPGAAKPNE 442
>gi|227204327|dbj|BAH57015.1| AT1G09230 [Arabidopsis thaliana]
Length = 375
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
VTLL++HLPD IP D +SR+FS YGAS+VRPCS G+LRN FVDF NE ASQA QLNG
Sbjct: 28 VTLLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNG 87
Query: 80 LRFLGKVLSVERASKPNEENKHKHFE 105
LRFLGKVL V+RA+KPN+ K + E
Sbjct: 88 LRFLGKVLQVQRANKPNDNKKSRQIE 113
>gi|356560981|ref|XP_003548764.1| PREDICTED: uncharacterized protein LOC100818499 [Glycine max]
Length = 456
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/78 (78%), Positives = 67/78 (85%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
VTLLIKHLP+AIP DTLSRIF+++GAS VRPCS+ RLRNC F DF NE +ASQAQ QLNG
Sbjct: 24 VTLLIKHLPEAIPHDTLSRIFANFGASFVRPCSSARLRNCAFADFKNEIVASQAQRQLNG 83
Query: 80 LRFLGKVLSVERASKPNE 97
LRFLGKVLS ERAS P E
Sbjct: 84 LRFLGKVLSAERASNPTE 101
>gi|224144758|ref|XP_002325403.1| predicted protein [Populus trichocarpa]
gi|222862278|gb|EEE99784.1| predicted protein [Populus trichocarpa]
Length = 420
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
E + VTLLIKHLP+AIP TLSR+FSHYGA SVRPC++GRL+NC FVDF +E LA QA
Sbjct: 31 EPQVTVTLLIKHLPEAIPFKTLSRLFSHYGAVSVRPCNSGRLKNCAFVDFKSESLAYQAH 90
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRN 120
QLNGL FLGKVLSVERASK +E + K S +++A+V R+
Sbjct: 91 TQLNGLSFLGKVLSVERASKLSEAQQGKE-SVPPTSLIEDASVPRD 135
>gi|356570297|ref|XP_003553326.1| PREDICTED: RNA-binding protein 40-like [Glycine max]
Length = 452
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 70/85 (82%), Gaps = 2/85 (2%)
Query: 15 ETENLV--TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQ 72
+ E+LV TLLIKHLP+AIP TLSRI +++GASSVRPCS GRLRNC F DF NE +ASQ
Sbjct: 27 DAESLVPATLLIKHLPEAIPDVTLSRILANFGASSVRPCSTGRLRNCAFADFKNEIVASQ 86
Query: 73 AQMQLNGLRFLGKVLSVERASKPNE 97
AQ QLNGLRFLGKVLS ERAS P E
Sbjct: 87 AQRQLNGLRFLGKVLSAERASNPTE 111
>gi|115452785|ref|NP_001049993.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|108707928|gb|ABF95723.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548464|dbj|BAF11907.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|218192743|gb|EEC75170.1| hypothetical protein OsI_11395 [Oryza sativa Indica Group]
Length = 467
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 74/90 (82%), Gaps = 3/90 (3%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TLL++HLP+AIPQ+ LSR+FSHYGA+SVRPC+ G+LRNC FVDF +E +ASQAQ LN L
Sbjct: 44 TLLVRHLPEAIPQEMLSRLFSHYGATSVRPCAGGKLRNCAFVDFRDEVVASQAQSLLNRL 103
Query: 81 RFLGKVLSVERASKPNEEN---KHKHFEAQ 107
RFLGKVL VERA++PN +N K + EAQ
Sbjct: 104 RFLGKVLIVERANQPNSKNANEKQQEHEAQ 133
>gi|3249110|gb|AAC24093.1| T12M4.6 [Arabidopsis thaliana]
Length = 467
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 68/88 (77%), Gaps = 2/88 (2%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
VTLL++HLPD IP D +SR+FS YGAS+VRPCS G+LRN FVDF NE ASQA QLNG
Sbjct: 28 VTLLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNG 87
Query: 80 --LRFLGKVLSVERASKPNEENKHKHFE 105
LRFLGKVL V+RA+KPN+ K + E
Sbjct: 88 YQLRFLGKVLQVQRANKPNDNKKSRQIE 115
>gi|255568988|ref|XP_002525464.1| RNA binding protein, putative [Ricinus communis]
gi|223535277|gb|EEF36954.1| RNA binding protein, putative [Ricinus communis]
Length = 450
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/78 (71%), Positives = 66/78 (84%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
E+ + TLLI+HLP+AIP +TLSR+FSHYGA+SVRPC+ GRL NC FVDF NE LA QAQ
Sbjct: 4 ESAAVSTLLIRHLPEAIPHETLSRLFSHYGATSVRPCAGGRLTNCAFVDFKNEALAYQAQ 63
Query: 75 MQLNGLRFLGKVLSVERA 92
QLNGLRFLGKVL+ E+A
Sbjct: 64 RQLNGLRFLGKVLAAEKA 81
>gi|242035873|ref|XP_002465331.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor]
gi|241919185|gb|EER92329.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor]
Length = 467
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 73/101 (72%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TLL++HLP+AI Q+ LSR+FSHYGA+SVRPCS G+LRNC FVDF +E A+ A LN L
Sbjct: 44 TLLVRHLPEAITQEMLSRLFSHYGATSVRPCSGGKLRNCAFVDFRDEAAANHAHSLLNRL 103
Query: 81 RFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
RFLGKVL+VERA++PN + H + Q + + + +Q
Sbjct: 104 RFLGKVLTVERANRPNANDSHLKHQDQLVHGVSQVPSISSQ 144
>gi|212721632|ref|NP_001132325.1| uncharacterized protein LOC100193767 [Zea mays]
gi|194694084|gb|ACF81126.1| unknown [Zea mays]
gi|414866589|tpg|DAA45146.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
gi|414866590|tpg|DAA45147.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
Length = 450
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TLL++HLP+AI Q+ LSR+FSHYGA+SVRPCS G+LRNC FVDF +E A+ A LN L
Sbjct: 27 TLLVRHLPEAITQEMLSRLFSHYGATSVRPCSGGKLRNCAFVDFRDEAAANHAHSLLNRL 86
Query: 81 RFLGKVLSVERASKPNEENKH-KH 103
RFLGKVL+VERA+ PN H KH
Sbjct: 87 RFLGKVLTVERANCPNANESHLKH 110
>gi|414866588|tpg|DAA45145.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
Length = 396
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TLL++HLP+AI Q+ LSR+FSHYGA+SVRPCS G+LRNC FVDF +E A+ A LN L
Sbjct: 27 TLLVRHLPEAITQEMLSRLFSHYGATSVRPCSGGKLRNCAFVDFRDEAAANHAHSLLNRL 86
Query: 81 RFLGKVLSVERASKPNEENKH-KH 103
RFLGKVL+VERA+ PN H KH
Sbjct: 87 RFLGKVLTVERANCPNANESHLKH 110
>gi|357128643|ref|XP_003565980.1| PREDICTED: RNA-binding protein 40-like [Brachypodium distachyon]
Length = 455
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 70/94 (74%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TLL++HLP+AI QD LSR+FSHYGA++VRP G+LRNC FVDF +E A+QAQ LN L
Sbjct: 34 TLLVRHLPEAITQDMLSRLFSHYGATAVRPGGGGKLRNCAFVDFKDEMAANQAQSLLNRL 93
Query: 81 RFLGKVLSVERASKPNEENKHKHFEAQSISSMKE 114
RFLGKVL VERA++PN +N + + Q M +
Sbjct: 94 RFLGKVLIVERANQPNAKNASEKHQEQLAHGMPQ 127
>gi|168034238|ref|XP_001769620.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679162|gb|EDQ65613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 457
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
VTLLI+HLP+ + DTL R+FSHYGAS R C++GRL+NC FVD+ NE A+ AQ Q++
Sbjct: 22 VTLLIRHLPEGLMADTLKRLFSHYGASDFRLCTSGRLKNCAFVDYDNESAAAAAQSQMHR 81
Query: 80 LRFLGKVLSVERA 92
LRFLGK+LSVERA
Sbjct: 82 LRFLGKILSVERA 94
>gi|222624851|gb|EEE58983.1| hypothetical protein OsJ_10687 [Oryza sativa Japonica Group]
Length = 560
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 41/55 (74%), Gaps = 3/55 (5%)
Query: 56 LRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEEN---KHKHFEAQ 107
LRNC FVDF +E +ASQAQ LN LRFLGKVL VERA++PN +N K + EAQ
Sbjct: 172 LRNCAFVDFRDEVVASQAQSLLNRLRFLGKVLIVERANQPNSKNANEKQQEHEAQ 226
>gi|147802489|emb|CAN75155.1| hypothetical protein VITISV_042642 [Vitis vinifera]
Length = 92
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%), Gaps = 3/56 (5%)
Query: 1 MATAPFDSGP--QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAG 54
MA+ P GP Q+ + ++ TLLI+HLP+AIPQDTLSR+FS YGASSVRP ++G
Sbjct: 1 MASQPML-GPRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPSTSG 55
>gi|156390212|ref|XP_001635165.1| predicted protein [Nematostella vectensis]
gi|156222256|gb|EDO43102.1| predicted protein [Nematostella vectensis]
Length = 476
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC--SAGRLRNCVFVDFGNEPLASQAQ 74
++ L ++HLP+ + F H+GA SV C +G++R+ FV+F ++ AS+A
Sbjct: 7 KDYCKLFVRHLPNVLSNADKEDFFKHFGARSVI-CMGRSGKMRDTAFVEFPDDTTASKAL 65
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
+L+ L LG L VE A+K E+ +H + +S KEAA
Sbjct: 66 RRLHQLEILGSALVVEYATKQQEQTAAQH--SNRMSPKKEAA 105
>gi|327270620|ref|XP_003220087.1| PREDICTED: RNA-binding protein 40-like [Anolis carolinensis]
Length = 515
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-GRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + H+GASSVR S GRL++ F F NE A+QA +L+
Sbjct: 21 TLLVRHLPAVLKAPEKEDLLRHFGASSVRVLSDHGRLKHTAFATFPNENAAAQALSKLHQ 80
Query: 80 LRFLGKVLSVERA 92
L LG L VE A
Sbjct: 81 LNLLGHTLVVEYA 93
>gi|90093337|ref|NP_001035019.1| RNA-binding protein 40 [Danio rerio]
gi|89130616|gb|AAI14289.1| RNA-binding region (RNP1, RRM) containing 3 [Danio rerio]
Length = 505
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQA 73
+T+ TL+I+HLP + +D + ++GASSVR S G L++ F F +E AS+A
Sbjct: 10 QTKKSKTLIIRHLPRELSRDEKEDLLKYFGASSVRVLSEKGPLKHMAFATFSSETSASKA 69
Query: 74 QMQLNGLRFLGKVLSVERA 92
+L+ LR LG+ L VE A
Sbjct: 70 LNRLHQLRILGRTLVVEFA 88
>gi|432103902|gb|ELK30735.1| RNA-binding protein 40 [Myotis davidii]
Length = 515
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAVKALTRLHQ 87
Query: 80 LRFLGKVLSVERASKPNE 97
L+ LG L VE A + +E
Sbjct: 88 LKLLGHTLVVEFAKEQDE 105
>gi|403283796|ref|XP_003933288.1| PREDICTED: RNA-binding protein 40-like [Saimiri boliviensis
boliviensis]
Length = 515
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 27 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFSNEKAAIKALTRLHQ 86
Query: 80 LRFLGKVLSVERASKPNEENKHKH 103
L+ LG L VE A +E H H
Sbjct: 87 LKLLGHTLVVEFA----KEQDHVH 106
>gi|116004451|ref|NP_001070585.1| RNA-binding protein 40 [Bos taurus]
gi|122144028|sp|Q3MHP0.1|RBM40_BOVIN RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|75775276|gb|AAI05166.1| RNA-binding region (RNP1, RRM) containing 3 [Bos taurus]
Length = 516
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRDLSDKGRLKHTAFATFPNEKTAVKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|344275550|ref|XP_003409575.1| PREDICTED: RNA-binding protein 40 [Loxodonta africana]
Length = 517
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTTEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERASK 94
L+ LG L VE A +
Sbjct: 88 LKLLGHTLVVEFAKE 102
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---------VRPCSAGRLRNCVFVDFGNEPLASQ 72
+ +K+L + + L IF Y S +R GR++ F+ NE A++
Sbjct: 422 IYVKNLAKHVQEKDLKFIFGRYVNFSSETERIMFDIRLMKEGRMKGQAFIGLPNETAAAK 481
Query: 73 AQMQLNGLRFLGKVLSVE--RASKPNEENK 100
A + NG GK + V+ R+++P +++K
Sbjct: 482 ALREANGYVLFGKPMVVQFARSARPKQDSK 511
>gi|395535479|ref|XP_003769753.1| PREDICTED: RNA-binding protein 40 [Sarcophilus harrisii]
Length = 510
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + H+GA +VR S GRL++ F F NE A +A +L+
Sbjct: 27 TLLVRHLPAELTAEEKEHLLKHFGAQAVRVLSDKGRLKHTAFATFPNEKAAIKALSRLHQ 86
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 87 LKVLGHTLVVEFA 99
>gi|302811317|ref|XP_002987348.1| hypothetical protein SELMODRAFT_235257 [Selaginella moellendorffii]
gi|300144983|gb|EFJ11663.1| hypothetical protein SELMODRAFT_235257 [Selaginella moellendorffii]
Length = 407
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 53 AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHK 102
G L+NC F+DF ++ A++AQ QL+ +RFLGK L+ E++ P E++ K
Sbjct: 39 GGMLKNCAFLDFPDDASAARAQSQLHRVRFLGKTLTAEKSRAPGEDDATK 88
>gi|440904280|gb|ELR54816.1| RNA-binding protein 40 [Bos grunniens mutus]
Length = 517
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKTAVKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|296489386|tpg|DAA31499.1| TPA: RNA-binding protein 40 [Bos taurus]
Length = 516
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKTAVKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|432927341|ref|XP_004080978.1| PREDICTED: RNA-binding protein 40-like [Oryzias latipes]
Length = 500
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQA 73
ET+ TLL++HLP + D + ++GA SVR S GR+++ F F + LAS+A
Sbjct: 9 ETKGSKTLLVRHLPSELSPDEKEDLLKYFGAESVRVFSNHGRMKHAAFATFKTKTLASKA 68
Query: 74 QMQLNGLRFLGKVLSVERA 92
+L+ L L + L VE A
Sbjct: 69 LTRLHQLEILDQKLVVEFA 87
>gi|355745490|gb|EHH50115.1| hypothetical protein EGM_00887, partial [Macaca fascicularis]
Length = 515
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|426216081|ref|XP_004002297.1| PREDICTED: RNA-binding protein 40 [Ovis aries]
Length = 517
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKTAVKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|90078134|dbj|BAE88747.1| unnamed protein product [Macaca fascicularis]
Length = 287
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|189303595|ref|NP_001094280.1| RNA-binding protein 40 [Rattus norvegicus]
gi|160419222|sp|Q4G055.2|RBM40_RAT RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|149025759|gb|EDL82002.1| rCG28478 [Rattus norvegicus]
gi|183986085|gb|AAI66571.1| Rnpc3 protein [Rattus norvegicus]
Length = 515
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|410908825|ref|XP_003967891.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like
[Takifugu rubripes]
Length = 505
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + QD + ++GA SVR S GR+++ F F +E A+ A +L+
Sbjct: 15 TLLVRHLPAELEQDEKVELLKYFGAESVRLFSNTGRMKHTAFAQFRSEKAAASALNRLHQ 74
Query: 80 LRFLGKVLSVERA 92
L LG L VE A
Sbjct: 75 LEILGHTLVVEFA 87
>gi|297279397|ref|XP_001108341.2| PREDICTED: RNA-binding protein 40-like [Macaca mulatta]
Length = 511
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---------VRPCSAGRLRNCVFVDFGNEPLASQ 72
+ +K+L + + L IF Y S +R GR++ F+ NE A++
Sbjct: 415 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAATK 474
Query: 73 AQMQLNGLRFLGKVLSVE--RASKPNEENK 100
A + NG GK + V+ R+++P ++ K
Sbjct: 475 ALKEANGYVLFGKPMVVQFARSARPKQDPK 504
>gi|31981077|ref|NP_080319.2| RNA-binding protein 40 [Mus musculus]
gi|84662758|ref|NP_001033785.1| RNA-binding protein 40 [Mus musculus]
gi|160419225|sp|Q3UZ01.2|RBM40_MOUSE RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|27695046|gb|AAH43695.1| RNA-binding region (RNP1, RRM) containing 3 [Mus musculus]
gi|148680462|gb|EDL12409.1| RNA-binding region (RNP1, RRM) containing 3 [Mus musculus]
Length = 514
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|226481272|emb|CAX79101.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 210
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
+L I+HLPD D L R F YG P GR++ F++FGN A A
Sbjct: 7 SLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFGNPRDAEDAHYY 66
Query: 77 LNGLRFLGKVLSVE 90
++ RF+G+ + VE
Sbjct: 67 MDHTRFMGRDIEVE 80
>gi|74145491|dbj|BAE36180.1| unnamed protein product [Mus musculus]
Length = 513
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|402855450|ref|XP_003892337.1| PREDICTED: RNA-binding protein 40 [Papio anubis]
Length = 518
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|311254710|ref|XP_003125931.1| PREDICTED: RNA-binding protein 40-like [Sus scrofa]
gi|350583601|ref|XP_003481551.1| PREDICTED: RNA-binding protein 40 [Sus scrofa]
Length = 515
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|441637137|ref|XP_003282014.2| PREDICTED: RNA-binding protein 40 [Nomascus leucogenys]
Length = 517
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAVKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|355558218|gb|EHH14998.1| hypothetical protein EGK_01023, partial [Macaca mulatta]
Length = 461
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---------VRPCSAGRLRNCVFVDFGNEPLASQ 72
+ +K+L + + L IF Y S +R GR++ F+ NE A++
Sbjct: 366 IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAATK 425
Query: 73 AQMQLNGLRFLGKVLSVE--RASKPNEENK 100
A + NG GK + V+ R+++P ++ K
Sbjct: 426 ALKEANGYVLFGKPMVVQFARSARPKQDPK 455
>gi|296208669|ref|XP_002751197.1| PREDICTED: RNA-binding protein 40 [Callithrix jacchus]
Length = 517
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|197099048|ref|NP_001126576.1| RNA-binding protein 40 [Pongo abelii]
gi|75070522|sp|Q5R6C7.1|RBM40_PONAB RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|55731961|emb|CAH92689.1| hypothetical protein [Pongo abelii]
Length = 517
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|40538732|ref|NP_060089.1| RNA-binding protein 40 [Homo sapiens]
gi|74760946|sp|Q96LT9.1|RBM40_HUMAN RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3; AltName: Full=U11/U12 small
nuclear ribonucleoprotein 65 kDa protein; Short=U11/U12
snRNP 65 kDa protein; Short=U11/U12-65K
gi|16553747|dbj|BAB71580.1| unnamed protein product [Homo sapiens]
gi|37543954|gb|AAM45139.1| RNA recognition protein [Homo sapiens]
gi|48427628|tpg|DAA05493.1| TPA_exp: U11/U12 snRNP 65K [Homo sapiens]
gi|56969191|gb|AAH10697.2| RNA-binding region (RNP1, RRM) containing 3 [Homo sapiens]
gi|119593307|gb|EAW72901.1| hCG2044817 [Homo sapiens]
gi|119593311|gb|EAW72905.1| hCG2044816, isoform CRA_a [Homo sapiens]
gi|119593312|gb|EAW72906.1| hCG2044816, isoform CRA_a [Homo sapiens]
gi|208965476|dbj|BAG72752.1| RNA-binding region (RNP1, RRM) containing 3 [synthetic construct]
Length = 517
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|395821637|ref|XP_003784144.1| PREDICTED: RNA-binding protein 40 [Otolemur garnettii]
Length = 516
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|158260711|dbj|BAF82533.1| unnamed protein product [Homo sapiens]
Length = 516
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|397495807|ref|XP_003818737.1| PREDICTED: RNA-binding protein 40 [Pan paniscus]
Length = 518
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|332809668|ref|XP_003308296.1| PREDICTED: RNA-binding protein 40 isoform 1 [Pan troglodytes]
gi|410214446|gb|JAA04442.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
gi|410307708|gb|JAA32454.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
gi|410328887|gb|JAA33390.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
Length = 517
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|14017895|dbj|BAB47468.1| KIAA1839 protein [Homo sapiens]
Length = 541
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 52 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 111
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 112 LKLLGHTLVVEFA 124
>gi|74213761|dbj|BAB28770.3| unnamed protein product [Mus musculus]
Length = 283
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|351699567|gb|EHB02486.1| RNA-binding protein 40 [Heterocephalus glaber]
Length = 517
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELSPEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|301790935|ref|XP_002930470.1| PREDICTED: RNA-binding protein 40-like, partial [Ailuropoda
melanoleuca]
Length = 589
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 100 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 159
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 160 LKLLGHTLVVEFA 172
>gi|355717002|gb|AES05792.1| RNA-binding region containing 3 [Mustela putorius furo]
Length = 513
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 26 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 85
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 86 LKLLGHTLVVEFA 98
>gi|345801621|ref|XP_547257.3| PREDICTED: RNA-binding protein 40 [Canis lupus familiaris]
Length = 518
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 29 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 88
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 89 LKLLGHTLVVEFA 101
>gi|291398403|ref|XP_002715872.1| PREDICTED: RNA-binding region (RNP1, RRM) containing 3
[Oryctolagus cuniculus]
Length = 516
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 27 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 86
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 87 LKLLGHTLVVEFA 99
>gi|417402186|gb|JAA47947.1| Putative spliceosomal protein snrnp-u1a/u2b [Desmodus rotundus]
Length = 517
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKTAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERASK 94
L+ LG L VE A +
Sbjct: 88 LKLLGHTLVVEFAKE 102
>gi|158339748|ref|YP_001520755.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|158340644|ref|YP_001521812.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|158309989|gb|ABW31605.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|158310885|gb|ABW32498.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 95
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSV----RPCSAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + QD + +F+ YGA S + GR+R FV+ GN+ S+A
Sbjct: 1 MSIYVGNLSYDVTQDEIQAVFAEYGAVSNVHVPKDRETGRMRGFAFVELGNDAEESKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
+L G ++G+ L V +A +P E N+
Sbjct: 61 ELEGAEWMGRTLKVNKA-RPRENNR 84
>gi|74140935|dbj|BAE22060.1| unnamed protein product [Mus musculus]
Length = 514
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAKEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|260817846|ref|XP_002603796.1| hypothetical protein BRAFLDRAFT_114988 [Branchiostoma floridae]
gi|229289119|gb|EEN59807.1| hypothetical protein BRAFLDRAFT_114988 [Branchiostoma floridae]
Length = 425
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNE 67
GP N +ET N TL+++HLP + + H+GA SV+ S GR+++ F F +
Sbjct: 2 GPDN-EETSN--TLIVRHLPAELSPADREDLLKHFGAESVKCMSDKGRMKHTAFATFTDH 58
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASK 94
A +A +L+ L LG+ L VE A K
Sbjct: 59 QAAEKALTRLHQLEVLGRRLVVEFAKK 85
>gi|334323863|ref|XP_001381889.2| PREDICTED: RNA-binding protein 40 [Monodelphis domestica]
Length = 510
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + H+GA +VR S GRL++ F F NE +A +L+
Sbjct: 27 TLLVRHLPAELTAEEKEHLLKHFGAQAVRVLSDKGRLKHTAFATFPNEKATIKALSRLHQ 86
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 87 LKVLGHTLVVEFA 99
>gi|317419755|emb|CBN81791.1| RNA-binding protein 40 [Dicentrarchus labrax]
Length = 511
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQA 73
+T TLL++HLP + +D + ++GA SVR S GRL++ F F +E A +A
Sbjct: 9 QTSGCKTLLVRHLPAELSKDEKEDLLKYFGAESVRVFSNTGRLKHAAFATFRSEKSAEKA 68
Query: 74 QMQLNGLRFLGKVLSVERA 92
+L+ L L + L VE A
Sbjct: 69 LSRLHQLEILDRTLVVEFA 87
>gi|434396627|ref|YP_007130631.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
gi|428267724|gb|AFZ33665.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
Length = 102
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + ++P + Q+ LS IF+ YG + P GR+R FV+ NE QA
Sbjct: 1 MSIYVGNIPYEVTQEDLSSIFAEYGTVTRVYLPVDRETGRMRGFGFVEMSNETEEDQAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHF 104
L+G ++G+ L V +A +P E N ++++
Sbjct: 61 TLDGAEWMGRELRVNKA-RPKENNNNRNY 88
>gi|338725221|ref|XP_003365101.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Equus
caballus]
Length = 580
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
T L++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 92 TFLVRHLPAELSAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFANEKAAIKALTRLHQ 151
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 152 LKLLGHTLVVEFA 164
>gi|348586942|ref|XP_003479227.1| PREDICTED: RNA-binding protein 40-like [Cavia porcellus]
Length = 517
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLLI+HLP + + + ++GA SVR S GRL++ F F +E A +A +L+
Sbjct: 28 TLLIRHLPAELSAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPSEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ P+D + +FS YG + ++ S G+ R F++F N A++A
Sbjct: 229 NFTNVYVKNVDVDTPEDEFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAV 288
Query: 75 MQLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSISSM 112
+LN L F G+ L V RA K E + K +EA + +
Sbjct: 289 EELNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLEKL 328
>gi|410967851|ref|XP_003990427.1| PREDICTED: RNA-binding protein 40 [Felis catus]
Length = 517
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F +E A +A +L+
Sbjct: 29 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPSEKAAIKALTRLHQ 88
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 89 LKLLGHTLVVEFA 101
>gi|339238293|ref|XP_003380701.1| putative squamous cell carcinoma antigen recognized by T-cells 3
[Trichinella spiralis]
gi|316976387|gb|EFV59689.1| putative squamous cell carcinoma antigen recognized by T-cells 3
[Trichinella spiralis]
Length = 1241
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC--SAGRLRNCVFVDFGNEPLASQAQMQLN 78
L +K++P ++ + +F YG SVR +GR + +V+F NE A +A++ N
Sbjct: 792 LFVKNIPTFATENEVETLFRQYGDLRSVRLVLHKSGRSKGLAYVEFDNEEAAERARLGQN 851
Query: 79 GLRFLGKVLSVERASKPNEENK 100
G FLGK LSVE ++ P +++
Sbjct: 852 GAHFLGKRLSVEFSNPPPRQDR 873
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++P D +F +G ++S+ AG+ R FV+F N AS A
Sbjct: 241 NFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAAV 300
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSI 109
+LNG F+G+ L V RA K + EE K +EA I
Sbjct: 301 DELNGKDFMGQDLYVGRAQKKHEREEELRKSYEAARI 337
>gi|29841102|gb|AAP06115.1| similar to NM_080743 serine-arginine repressor protein (35 kDa)
in Homo sapiens [Schistosoma japonicum]
gi|226476576|emb|CAX72180.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481266|emb|CAX79098.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481268|emb|CAX79099.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481270|emb|CAX79100.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481274|emb|CAX79102.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481276|emb|CAX79103.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481278|emb|CAX79104.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481280|emb|CAX79105.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481282|emb|CAX79106.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481284|emb|CAX79107.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481286|emb|CAX79108.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481288|emb|CAX79109.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481292|emb|CAX79111.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481294|emb|CAX79112.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481300|emb|CAX79114.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481699|emb|CAX79115.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481701|emb|CAX79116.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 210
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
+L I+HLPD D L R F YG P GR++ F++F N A A
Sbjct: 7 SLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHYY 66
Query: 77 LNGLRFLGKVLSVE 90
++ RF+G+ + VE
Sbjct: 67 MDHTRFMGRDIEVE 80
>gi|226476570|emb|CAX72177.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481290|emb|CAX79110.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226481296|emb|CAX79113.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 210
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
+L I+HLPD D L R F YG P GR++ F++F N A A
Sbjct: 7 SLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHYY 66
Query: 77 LNGLRFLGKVLSVE 90
++ RF+G+ + VE
Sbjct: 67 MDHTRFMGRDIEVE 80
>gi|47218419|emb|CAG12690.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLLI+HLP + + + ++GA SVR S GR+++ F F +E A+ A +L+
Sbjct: 15 TLLIRHLPAELTEGEKEELLKYFGAESVRLFSNTGRMKHTAFAQFRSERAAASALNRLHQ 74
Query: 80 LRFLGKVLSVERA 92
L LG L VE A
Sbjct: 75 LEILGHTLVVEVA 87
>gi|226481705|emb|CAX79118.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 210
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
+L I+HLPD D L R F YG P GR++ F++F N A A
Sbjct: 7 SLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHYY 66
Query: 77 LNGLRFLGKVLSVE 90
++ RF+G+ + VE
Sbjct: 67 MDHTRFMGRDIEVE 80
>gi|390351660|ref|XP_783188.3| PREDICTED: RNA-binding protein 40-like [Strongylocentrotus
purpuratus]
Length = 530
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA--GRLRNCVFVDFGNEPLASQAQMQLNG 79
L+++HLP ++ + H+GA SV+ C A GR+++ F +F N ASQA +L+
Sbjct: 12 LIVRHLPSSLDASEKENLLKHFGAVSVK-CMANHGRMKHTAFANFENHNAASQALGRLHQ 70
Query: 80 LRFLGKVLSVERA 92
+ LG L+V+ A
Sbjct: 71 MNVLGHTLTVQFA 83
>gi|256076749|ref|XP_002574672.1| serine/arginine rich splicing factor [Schistosoma mansoni]
gi|360045341|emb|CCD82889.1| putative serine/arginine rich splicing factor [Schistosoma
mansoni]
Length = 210
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
+L I+HLPD D L R F YG P GR++ F++F N A A
Sbjct: 7 SLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHYY 66
Query: 77 LNGLRFLGKVLSVE 90
++ RF+G+ + VE
Sbjct: 67 MDHTRFMGRDIEVE 80
>gi|298492453|ref|YP_003722630.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298234371|gb|ADI65507.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 102
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QDTLS +F+ YG SVR G+LR FV+ G E + A
Sbjct: 1 MSIYVGNLSYEVTQDTLSAVFAEYG--SVRRVQLPTDRETGKLRGFGFVEMGTEAEETTA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>gi|226481703|emb|CAX79117.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 115
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
+L I+HLPD D L R F YG P GR++ F++F N A A
Sbjct: 7 SLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHYY 66
Query: 77 LNGLRFLGKVLSVE 90
++ RF+G+ + VE
Sbjct: 67 MDHTRFMGRDIEVE 80
>gi|226476572|emb|CAX72178.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
gi|226476574|emb|CAX72179.1| FUS-interacting serine-arginine-rich protein 1 [Schistosoma
japonicum]
Length = 125
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
+L I+HLPD D L R F YG P GR++ F++F N A A
Sbjct: 7 SLYIRHLPDTCRHDDLRRCFGRYGRIVDVTIPLDFFTGRMKGYAFIEFENPRDAEDAHYY 66
Query: 77 LNGLRFLGKVLSVE 90
++ RF+G+ + VE
Sbjct: 67 MDHTRFMGRDIEVE 80
>gi|118094273|ref|XP_422302.2| PREDICTED: RNA-binding protein 40 [Gallus gallus]
Length = 550
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-GRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + H+GA +VR S GRL++ F F +E A +A +L+
Sbjct: 65 TLLVRHLPAELTVAEKEDLLQHFGAVAVRVLSDHGRLKHTAFATFPSENAAVKALSRLHQ 124
Query: 80 LRFLGKVLSVERASK 94
L+ LG L VE A +
Sbjct: 125 LKLLGHTLVVEFAKE 139
>gi|158340529|ref|YP_001521523.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|158310770|gb|ABW32384.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 91
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSV---RPCSAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ L IFS YG ++V + G+LR FVD GN+ +A
Sbjct: 1 MSIYVGNLSYEVAQEDLRAIFSEYGEVTNVHLPKDRETGKLRGFAFVDLGNDADEVKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
L+G ++G+ L V +A +P E+N+
Sbjct: 61 DLDGAEWMGRSLKVNKA-RPREKNR 84
>gi|428203801|ref|YP_007082390.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
gi|427981233|gb|AFY78833.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
Length = 99
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ I +LP + +D L ++F+ YG SVR P GR+R FV+ E + A
Sbjct: 1 MSIFIGNLPYEVSEDDLKQVFADYGTVKSVRLPMDRETGRVRGFAFVEMDTEAEETAAIQ 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
L+G +++G+ L V +A +P E+ +
Sbjct: 61 ALDGAKWIGRSLKVSKA-RPREDKR 84
>gi|340725133|ref|XP_003400928.1| PREDICTED: RNA-binding protein 40-like [Bombus terrestris]
Length = 468
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TL I HLP + + + +F YGA+ R + F F ++ +A+QA ++L+ L
Sbjct: 11 TLRILHLPPELSDERRTELFKKYGATKTRTLRFSKKYTITFAKFQSQEIATQALLRLHQL 70
Query: 81 RFLGKVLSVERASK 94
G+ L+VE A K
Sbjct: 71 NVKGQYLTVEFAKK 84
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++P + + +F+ YG +SS+ G+ R FV+F AS+A
Sbjct: 293 NFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAV 352
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE + +EA
Sbjct: 353 EELNGKDFRGQELYVGRAQKKHEREEELRRSYEA 386
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 13 KQETENLVT------LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQ+ EN+ + + +K+L D + D L +F YG ++ V S G+ R FV+
Sbjct: 201 KQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVN 260
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F N A+QA +LNG F K L V RA K +E
Sbjct: 261 FENADAAAQAVQELNGKIFNDKELYVGRAQKKSE 294
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 13 KQETENLVT------LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQ+ EN+ + + +K+L D + D L +F YG ++ V S G+ R FV+
Sbjct: 201 KQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVN 260
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F N A+QA +LNG F K L V RA K +E
Sbjct: 261 FENADAAAQAVQELNGKIFNDKELYVGRAQKKSE 294
>gi|350412501|ref|XP_003489669.1| PREDICTED: RNA-binding protein 40-like [Bombus impatiens]
Length = 468
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TL I HLP + + + +F YGA+ R + F F ++ +A+QA ++L+ L
Sbjct: 11 TLRILHLPPELSDERRNELFKKYGATKTRTLRFSKKYTITFAKFQSQEIATQALLRLHQL 70
Query: 81 RFLGKVLSVERASK 94
G+ L+VE A K
Sbjct: 71 NVKGQYLTVEFAKK 84
>gi|348538447|ref|XP_003456702.1| PREDICTED: RNA-binding protein 40-like [Oreochromis niloticus]
Length = 508
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + ++ + ++GA SVR S GRL++ F F +E A++A +L+
Sbjct: 13 TLLVRHLPAELSEEEKEDLLKYFGAESVRVFSNRGRLKHAAFATFRSEKSAARALSRLHQ 72
Query: 80 LRFLGKVLSVERA 92
L L + L VE A
Sbjct: 73 LEVLDQTLVVEFA 85
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + + +FS YG ++++ G+L+ FVDF N A++A
Sbjct: 219 NFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAV 278
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSM 112
+LNG +F + L V RA K E + K +EA + M
Sbjct: 279 EELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKM 318
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K+L ++ +++F YG + S+ +AG+ R FV+F A QA
Sbjct: 248 NFTNVYVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAV 307
Query: 75 MQLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSISSM 112
+LN + GK L V RA K +E E K +E + +
Sbjct: 308 DELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQMKLEKI 347
>gi|434395314|ref|YP_007130261.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
gi|428267155|gb|AFZ33101.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
Length = 96
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L +D L +F+ YG V P GR+R FVD + A
Sbjct: 1 MTIYVGNLSYRATEDDLRAVFAEYGTVKRIVLPTDRETGRMRGFAFVDMTEDAQEDAAIT 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKH 103
+L+G ++G+ L V +A KP EEN ++
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPREENNRRN 87
>gi|195570612|ref|XP_002103301.1| GD19030 [Drosophila simulans]
gi|194199228|gb|EDX12804.1| GD19030 [Drosophila simulans]
Length = 244
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRN-----CV-FVD 63
P ++ E N L++ +LP + + L R+FS YG +R R R+ C FVD
Sbjct: 31 PPSRPEVRNKTNLILNYLPQDMTESELHRLFSKYG--EIRKAKVIRHRDTGISCCYGFVD 88
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
F +E A+ A LNG GK L V A +P E + A + M E +
Sbjct: 89 FVSERQAAAAVYNLNGYETRGKRLKVAFA-RPTEYENTNLYVANLPTYMDEKKI 141
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ D +F+ YG +SS+ G+ R FV+F ASQA
Sbjct: 240 NFTNVYVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAV 299
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 300 EELNGKDFRGQDLYVGRAQKKHEREEELRKSYEA 333
>gi|443312655|ref|ZP_21042271.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
gi|442777374|gb|ELR87651.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
Length = 96
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L ++ L +F+ YGA V P GRLR FVD + A
Sbjct: 1 MTIYVGNLSYRATEEDLRTVFAEYGAIKRIVLPTDRETGRLRGFAFVDMNEDAQEDTAIT 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHK 102
+L+G ++G+ L V +A KP E+N+ +
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPKEDNRRE 86
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++P ++ +F +G AS R G+ R FV+F N A+ A
Sbjct: 240 NFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATA 299
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSI 109
+LNG F G+ L V RA K + EE + +EA I
Sbjct: 300 VDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARI 337
>gi|198425302|ref|XP_002121929.1| PREDICTED: similar to RNA-binding region (RNP1, RRM) containing 3
[Ciona intestinalis]
Length = 473
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-GRLRNCVFVDFGNEPLASQAQMQLNGL 80
+L+KHLP + + +GA+ VR S+ G+LRN F F + AS A +L+ L
Sbjct: 10 VLVKHLPPELSLKEKQDLLKCFGANDVRVMSSKGQLRNAAFATFSDTKHASGAIKRLHQL 69
Query: 81 RFLGKVLSVERA 92
LG VLS E A
Sbjct: 70 EVLGYVLSAEHA 81
>gi|186685885|ref|YP_001869081.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
gi|186468337|gb|ACC84138.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
Length = 109
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD LS +F+ YG SV+ GRLR FV+ +E ++A
Sbjct: 1 MSIYVGNLSYEVTQDALSTVFAEYG--SVKRVQLPTDRETGRLRGFAFVEMSSEDEETKA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IESLDGAEWMGRDLKVNKA-KPRED 82
>gi|428300369|ref|YP_007138675.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
gi|428236913|gb|AFZ02703.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
Length = 115
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L ++ QD L+++FS YG + GR+R FV+ +E + A
Sbjct: 1 MSIYVGNLSYSVTQDDLTKVFSEYGTVTRVQLPTDRETGRVRGFGFVEMESEAAETAAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKH 103
L+G ++G+ L V +A +P EE +
Sbjct: 61 ALDGAEWMGRALKVNKA-RPKEEKNDGY 87
>gi|428224332|ref|YP_007108429.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
gi|427984233|gb|AFY65377.1| RNP-1 like RNA-binding protein [Geitlerinema sp. PCC 7407]
Length = 90
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L ++ + +F+ YG V P GR+R FVD ++ A
Sbjct: 1 MTIYVGNLSYQATEEDVRSVFAEYGTVERVVLPTDRETGRMRGFAFVDLTDDSTEDSAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHF 104
+LNG ++G+ L V +A KP EE++ F
Sbjct: 61 ELNGAEWMGRQLRVNKA-KPREESRGGSF 88
>gi|166796977|gb|AAI59025.1| rnpc3 protein [Xenopus (Silurana) tropicalis]
Length = 520
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR---LRNCVFVDFGNEPLASQ 72
+E TLL++HLP + + ++ GA SVR AGR LR F + NE A++
Sbjct: 36 SEERKTLLVRHLPSELTPEEQRQLLEKSGAQSVR-LGAGRNYKLRTTAFATYPNEFAAAK 94
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
A L+ L LG L VE A +EN H H Q S K+ +
Sbjct: 95 ALSVLHQLTILGHTLVVEYA----KEN-HIHLSDQPPFSEKKKS 133
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++P ++ +F +G AS R +G+ R FV+F N A+ A
Sbjct: 240 NFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATA 299
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE + +EA
Sbjct: 300 VDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEA 334
>gi|405951102|gb|EKC19044.1| RNA-binding protein 40 [Crassostrea gigas]
Length = 488
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPC-SAGRLRNCVFVDFGNEPLASQAQMQLNG 79
TL ++HLP + + + +H+GAS V+ + G +R+ F + + A +A QL+
Sbjct: 10 TLYVRHLPSELNKSEKEDLLTHFGASRVKVMGNKGPMRHAAFASYPDNESAKKALTQLHQ 69
Query: 80 LRFLGKVLSVERASKPNEEN 99
L LG L VE A EN
Sbjct: 70 LEVLGCKLVVEFAKNAQSEN 89
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++P + +F +G AS R G+ R FV+F N A+ A
Sbjct: 241 NFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATA 300
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSI 109
+LNG F G+ L V RA K + EE K +EA I
Sbjct: 301 VDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARI 338
>gi|75906252|ref|YP_320548.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|75699977|gb|ABA19653.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 99
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L ++ QD L+++FS YG+ + GR+R FV+ + A
Sbjct: 1 MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+VL V +A +P EE
Sbjct: 61 ALDGAEWMGRVLKVNKA-RPREE 82
>gi|17230269|ref|NP_486817.1| RNA binding protein [Nostoc sp. PCC 7120]
gi|81859084|sp|Q9WX37.3|RBPE_NOSS1 RecName: Full=Putative RNA-binding protein RbpE
gi|4850342|dbj|BAA77711.1| RNA binding protein [Anabaena variabilis]
gi|17131870|dbj|BAB74476.1| RNA binding protein [Nostoc sp. PCC 7120]
Length = 99
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L ++ QD L+++FS YG+ + GR+R FV+ + A
Sbjct: 1 MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+VL V +A +P EE
Sbjct: 61 ALDGAEWMGRVLKVNKA-RPREE 82
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ D +F YG ++S+ G++R FV+F A++A
Sbjct: 234 NFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAV 293
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQ 107
+LN L F G+ L V RA K + EE K +EAQ
Sbjct: 294 DELNDLDFKGQKLYVGRAQKKHEREEELRKQYEAQ 328
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + IK++ +++ + +++F YG ++++ G+ R FV+F + A++A
Sbjct: 240 NFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAV 299
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN F GK L V RA K + EE + +EA
Sbjct: 300 EELNDKEFHGKKLYVGRAQKKHEREEELRRQYEA 333
>gi|414075426|ref|YP_006994744.1| RNA-binding protein [Anabaena sp. 90]
gi|413968842|gb|AFW92931.1| RNA-binding protein [Anabaena sp. 90]
Length = 108
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ LS +F+ YGA GRLR FV+ G E A
Sbjct: 1 MSIYVGNLSYEVTQEALSAVFADYGAVKRVQLPTDRETGRLRGFGFVEMGTEAEEQAAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G++L V +A KP E+
Sbjct: 61 ALDGAEWMGRLLKVNKA-KPKED 82
>gi|254572962|ref|XP_002493590.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|238033389|emb|CAY71411.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|328354581|emb|CCA40978.1| Nuclear localization sequence-binding protein [Komagataella
pastoris CBS 7435]
Length = 362
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSH----YGASSVRPCSAGRLRNCVFVDFG 65
P K +TE + TL + L +I + L + F H GA + + GR R +VDF
Sbjct: 116 PAKKAKTEEITTLFVGRLSWSIDDEWLKKEFEHIGGVVGARVMMERATGRSRGYGYVDFD 175
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERA-SKP 95
N+ A +A ++ G G+ ++V+ + SKP
Sbjct: 176 NKASAEKALEEMQGKEIDGRPINVDMSNSKP 206
>gi|325303454|tpg|DAA34558.1| TPA_exp: RNA-binding protein LARK [Amblyomma variegatum]
Length = 217
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
L + HLPD + + L +F+ YG +V C + FV E A +A LN
Sbjct: 5 TKLFVGHLPDGLRTEELQELFAKYG--TVTECDV--INKYGFVHMATEEQAEEALKNLNN 60
Query: 80 LRFLGKVLSVERAS 93
F+G LSVER++
Sbjct: 61 YNFMGSTLSVERST 74
>gi|242012731|ref|XP_002427081.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511339|gb|EEB14343.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 332
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLR-NCVFVDFGNEPLASQAQMQ 76
NL TLLIKHLP+ + + ++GA V+ S+ R + N F F + A +
Sbjct: 3 NLDTLLIKHLPNDFNDEEKEKFLKYFGAKEVKCISSKRKKYNIAFARFESIDAAKSVIHR 62
Query: 77 LNGLRFLGKVLSVERA 92
L+ + G LSVE A
Sbjct: 63 LHQINIFGNFLSVEYA 78
>gi|195328687|ref|XP_002031046.1| GM24242 [Drosophila sechellia]
gi|194119989|gb|EDW42032.1| GM24242 [Drosophila sechellia]
Length = 244
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRN-----CV-FVD 63
P ++ E + L++ +LP + + L R+FS YG +R R R+ C FVD
Sbjct: 31 PPSRTEVRDKTNLILNYLPQDMTESELHRLFSKYG--EIRKAKVIRHRDTGISCCYGFVD 88
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
F +E A+ A LNG GK L V A +P+E + A + M E +
Sbjct: 89 FVSERQAAAAVNNLNGYETRGKRLKVAFA-RPSEYENTNLYVANLPTYMDEKKI 141
>gi|332020742|gb|EGI61146.1| RNA-binding protein 40 [Acromyrmex echinatior]
Length = 450
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TL I HLP + D + YGA+ + F F ++ LA++A ++L+ L
Sbjct: 2 TLRILHLPPQLSDDRRDALLQRYGATKTKTIRPSSKYTVTFAKFLSQQLAAEALLRLHQL 61
Query: 81 RFLGKVLSVERASK 94
G+ LSVE A K
Sbjct: 62 NIRGQYLSVEYAKK 75
>gi|428208904|ref|YP_007093257.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428010825|gb|AFY89388.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 103
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ L+++F+ YG + +GR R FV+ E A
Sbjct: 1 MSIYVGNLSYDVTQEDLTKVFADYGTVTRVQLPIDRESGRPRGFGFVEMETEDAEEAAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHK 102
+L+G R++G+VL V +A KP EE +
Sbjct: 61 ELDGARWMGRVLKVNKA-KPREEGGSR 86
>gi|427731667|ref|YP_007077904.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427367586|gb|AFY50307.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 103
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L ++ QD L+++F+ YGA + GR+R FV+ + A
Sbjct: 1 MSIYVGNLSYSVTQDDLTKVFAEYGAVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+V+ V +A +P EE
Sbjct: 61 ALDGAEWMGRVMKVNKA-RPREE 82
>gi|75906353|ref|YP_320649.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|75700078|gb|ABA19754.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 103
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ +S +F+ YG+ V P GRLR FV+ G++ + A
Sbjct: 1 MSIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 61 GLDGAEWMGRDLKVNKA-KPKED 82
>gi|17229803|ref|NP_486351.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|81859085|sp|Q9WX39.3|RBPF_NOSS1 RecName: Full=Putative RNA-binding protein RbpF
gi|4850345|dbj|BAA77713.1| RNA binding protein [Anabaena variabilis]
gi|17131403|dbj|BAB74010.1| RNA-binding protein [Nostoc sp. PCC 7120]
Length = 105
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ +S +F+ YG+ V P GRLR FV+ G++ + A
Sbjct: 1 MSIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 61 GLDGAEWMGRDLKVNKA-KPKED 82
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++P + +F +G AS R + + R FV+F N A++A
Sbjct: 241 NFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKA 300
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSI 109
+LNG F G+ L V RA K + EE K +EA I
Sbjct: 301 VDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARI 338
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K++ Q+ +F YG ++ + S G+LR FV+F + A++A
Sbjct: 218 FTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 76 QLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSISSM 112
+LN L F G+ L V RA K E + K +EA + +
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKL 316
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + + + +F+ +G +SS+ G+ R FV+F A+QA
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAV 298
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEA 332
>gi|62858877|ref|NP_001016017.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|115530784|emb|CAL49356.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR---LRNCVFVDFGNEPLASQ 72
+E TLL++H+P + + ++ GA SVR AGR LR F + NE A++
Sbjct: 43 SEERKTLLVRHIPSELTPEEQRQLLEKSGAQSVR-LGAGRNYKLRTTAFATYPNEFAAAK 101
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKE 114
A L+ L LG L VE A +EN H H Q S K+
Sbjct: 102 ALSVLHQLTILGHTLVVEYA----KEN-HIHLSDQPPFSEKK 138
>gi|209527224|ref|ZP_03275736.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376003288|ref|ZP_09781101.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|209492382|gb|EDZ92725.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375328318|emb|CCE16854.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
Length = 93
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + D LS +F+ YG S+ P GR R FV+ NE ++A
Sbjct: 1 MSIYVGNLSYDVTPDDLSEVFAQYGTVKRSMIPTDRETGRSRGFGFVEMVNEDEETKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHK 102
L+G ++G+ L V +A +P E NK +
Sbjct: 61 ALDGAEWMGRSLKVNKA-RPRENNKQR 86
>gi|119511522|ref|ZP_01630631.1| RNA-binding region protein [Nodularia spumigena CCY9414]
gi|119463833|gb|EAW44761.1| RNA-binding region protein [Nodularia spumigena CCY9414]
Length = 102
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QDTLS +F+ YG SV+ G+LR FV+ G + + A
Sbjct: 1 MSVYVGNLSYEVTQDTLSAVFAEYG--SVKRVQLPTNRETGQLRGFGFVEMGTDDEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>gi|213624585|gb|AAI71301.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|213627408|gb|AAI71275.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR---LRNCVFVDFGNEPLASQ 72
+E TLL++H+P + + ++ GA SVR AGR LR F + NE A++
Sbjct: 43 SEERKTLLVRHIPSELTPEEQRQLLEKSGAQSVR-LGAGRNYKLRTTAFATYPNEFAAAK 101
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKE 114
A L+ L LG L VE A +EN H H Q S K+
Sbjct: 102 ALSVLHQLTILGHTLVVEYA----KEN-HIHLSDQPPFSEKK 138
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ + +K++ + + +F+ YG +SS+ G+L+ FVDF A++A
Sbjct: 214 HFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAV 273
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSM 112
+LNG F + L V RA K E + K +EA + M
Sbjct: 274 EELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKM 313
>gi|428200576|ref|YP_007079165.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
gi|427978008|gb|AFY75608.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
Length = 93
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + ++ ++ L IF+ YG V P GR+R FVD +E QA
Sbjct: 1 MTIFVGNISHQAAKEDLEEIFAEYGIVKKVVLPLDRETGRMRGFAFVDLSSEDQEEQAIR 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHK 102
L+G +G+ L V +A +P E+N ++
Sbjct: 61 DLDGTELMGRQLRVNKA-RPREDNPNR 86
>gi|123430856|ref|XP_001307983.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889640|gb|EAX95053.1| hypothetical protein TVAG_428560 [Trichomonas vaginalis G3]
Length = 186
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPC-----SAGRLRNCVFVDFGNEPLASQAQM 75
TL +++L D IP D L R +Y SSV P G+ R +V F N A
Sbjct: 10 TLFVRNLTDKIPIDDLKRNL-YYLFSSVAPVVEINARKGQSRGQAWVSFPNLESAEIIMK 68
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
Q N FLGK L +E + P++
Sbjct: 69 QFNNFPFLGKALQIEYSKNPSK 90
>gi|427719776|ref|YP_007067770.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427352212|gb|AFY34936.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 101
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD LS +F+ YG SV+ GRLR FV+ G+E + A
Sbjct: 1 MSVYVGNLSYEVTQDALSAVFAEYG--SVKRVQLPTDRETGRLRGFAFVEMGSEAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|119512049|ref|ZP_01631143.1| RNA-binding region protein [Nodularia spumigena CCY9414]
gi|119463275|gb|EAW44218.1| RNA-binding region protein [Nodularia spumigena CCY9414]
Length = 99
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ I +L + QD LS +F+ YG +VR GR+R FV+ G++ + A
Sbjct: 1 MSIYIGNLSYDVTQDALSGVFAEYG--TVRRVQIPTDRETGRVRGFAFVEMGSDAEEAAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNE 97
L+G ++G+ L V +A KP E
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKE 81
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+LP I D L + F YG ++ V +G R+ FV+F + A+ A
Sbjct: 237 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVE 296
Query: 76 QLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSIS 110
++NG+ VL V RA K + EE + FE + IS
Sbjct: 297 KMNGISLGEDVLYVGRAQKKSEREEELRRKFEQERIS 333
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L +K+L D I D L +FS++G + C R +N V FV F ASQA +
Sbjct: 207 LYLKNLDDGITDDQLRELFSNFG--KITSCKIMRDQNGVSKGSGFVSFSTREEASQALTE 264
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
+NG GK L V A + +E++ +AQ S M+ +T
Sbjct: 265 MNGKMISGKPLYVAFAQR--KEDRKAMLQAQ-FSQMRPVPMT 303
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 13 KQETEN------LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE +N + +K+L ++ +D L ++FS YG ++ V G+ R FV+
Sbjct: 89 KQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFSGYGTITSAVVMIGMDGKSRCFDFVN 148
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE--NKHKHFEAQSISSMKEAA 116
F + A++A +LNG + K V RA K +E + + FE SMK+AA
Sbjct: 149 FESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFE----QSMKDAA 199
>gi|348504906|ref|XP_003440002.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Oreochromis
niloticus]
Length = 335
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDF 64
G Q ++ + L++ +LP ++ QD L +FS G A +R AG FV+F
Sbjct: 20 GEQMMEDEDARTNLIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNF 79
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERA 92
N A +A LNGLR K + V A
Sbjct: 80 VNPSDAERAISTLNGLRLQSKTIKVSFA 107
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ L IK+LP + + L+ +FS YG +++V+ +G+ R FV++ N AS+A
Sbjct: 236 HFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAV 295
Query: 75 MQLNGLRFLGKVLSVERASK 94
L+ + G +L V RA K
Sbjct: 296 EALHDKDYKGNILYVARAQK 315
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ + +K+LP I D L + F YG ++ V +G R+ FV+F + A+ A
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSIS 110
++NG+ VL V RA K + EE + FE + IS
Sbjct: 297 EKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERIS 334
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ + +K+LP I D L + F YG ++ V +G R+ FV+F + A+ A
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSIS 110
++NG+ VL V RA K + EE + FE + IS
Sbjct: 283 EKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERIS 320
>gi|224124344|ref|XP_002319308.1| predicted protein [Populus trichocarpa]
gi|222857684|gb|EEE95231.1| predicted protein [Populus trichocarpa]
Length = 344
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 4 APFDSGPQNKQETE-NLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFV 62
A + S N+ E++ N T+ + L ++ DTL +FS YG AG+ C FV
Sbjct: 250 AAYQSPQGNQGESDPNNTTIFVGALDPSVTDDTLRAVFSKYGELVHVKIPAGK--RCGFV 307
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVERASKPN 96
F N A QA LNG + G+ + + P+
Sbjct: 308 QFANRTCAEQALSMLNGTQIAGQNIRLSWGRSPS 341
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ + +K+LP I D L + F YG ++ V +G R+ FV+F + A+ A
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 282
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSIS 110
++NG+ VL V RA K + EE + FE + IS
Sbjct: 283 EKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERIS 320
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + + D +F+ +G +SS+ G+ R FV+F A++A
Sbjct: 243 NFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAV 302
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
LNG F G+ L V RA K + EE K +EA
Sbjct: 303 DDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEA 336
>gi|348504908|ref|XP_003440003.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Oreochromis
niloticus]
Length = 361
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDF 64
G Q ++ + L++ +LP ++ QD L +FS G A +R AG FV+F
Sbjct: 46 GEQMMEDEDARTNLIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNF 105
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERA 92
N A +A LNGLR K + V A
Sbjct: 106 VNPSDAERAISTLNGLRLQSKTIKVSFA 133
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L D++ + L RIF YGA + V G+ + FV+F N A++A LN
Sbjct: 205 VFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALN 264
Query: 79 GLRFLGKVLSVERASKPNE 97
G F GK V +A K +E
Sbjct: 265 GKNFDGKEWYVGKAQKKSE 283
>gi|383852802|ref|XP_003701914.1| PREDICTED: RNA-binding protein 40-like [Megachile rotundata]
Length = 427
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TL I HLP +P D + + YGA R + F F ++ A++A ++L+ L
Sbjct: 11 TLRILHLPPELPDDRRNELLQKYGAIKTRTLRPSKKYTVTFAKFKSQQAATEALLRLHQL 70
Query: 81 RFLGKVLSVERA 92
G+ L+VE A
Sbjct: 71 NVRGQHLTVEFA 82
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + ++ +F+ YG +SS+ + G+ R FV+F A++A
Sbjct: 243 NFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAV 302
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEA 336
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + + + +F+ +G +SS+ G+ R FV+F A+QA
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEA 332
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ +D ++F YG +SS+ G+ R FV+F A++A
Sbjct: 239 NFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEA 332
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L +K+L +++ TL IF YG ++ V GR + FV F N + QA+ LN
Sbjct: 304 LYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN 363
Query: 79 GLRFLGKVLSVERASKPNEENK--HKHFEAQ 107
G GK+L V A + + K ++F AQ
Sbjct: 364 GFSVDGKLLVVRVAERKEDRLKRLQQYFHAQ 394
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQA 73
+ + +K+L + I +D L R+FS YG S V GR R FV+F + A +A
Sbjct: 197 KGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKA 256
Query: 74 QMQLNGLRFLGKVLSVERASKPNEEN---KHKH 103
L+G + K L V +A K +E KHK+
Sbjct: 257 VDSLHGRQVGSKTLFVGKALKRDERREMLKHKY 289
>gi|434407004|ref|YP_007149889.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
gi|428261259|gb|AFZ27209.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
Length = 104
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + DTLS +F+ YG SV+ GRLR FV+ G E + A
Sbjct: 1 MSIYVGNLSYEVTSDTLSAVFAEYG--SVKRVQLPTDRETGRLRGFAFVEMGTEAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|354490313|ref|XP_003507303.1| PREDICTED: RNA-binding protein 41-like [Cricetulus griseus]
Length = 413
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P +GR+R F+ F N+ +A QA Q
Sbjct: 310 VLYLKNLSPRVKERDLISLFARFQEKKGPPIQFQIMSGRMRGQAFITFPNKDIAWQAVHQ 369
Query: 77 LNGLRFLGKVLSVERASKPNEEN 99
+NG + GK+L +E N+++
Sbjct: 370 INGYKLHGKILVIEFGKNKNQQS 392
>gi|427709160|ref|YP_007051537.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427361665|gb|AFY44387.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 99
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +D+LS +F+ YG SV+ GR+R FV+ G + + A
Sbjct: 1 MSVYVGNLSYEVTEDSLSAVFAEYG--SVKRIQLPTDRETGRMRGFGFVEMGTDAEETSA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|282896133|ref|ZP_06304159.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
gi|281199051|gb|EFA73926.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
Length = 98
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD L+ +FS YG V+ GR+R FV+ +E + A
Sbjct: 1 MSVYVGNLSYEVTQDALTAVFSEYG--EVKRVQIPTDRETGRVRGFAFVEMNSEAQETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP EE
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKEE 82
>gi|429328279|gb|AFZ80039.1| RNA recognition motif domain containing protein [Babesia equi]
Length = 525
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I H+P+ + L R FS +G A S GR + FV + N ASQA +
Sbjct: 428 LFIFHIPNEWTYNDLVRSFSQFGRVISARIATDKSTGRHKGYAFVSYDNPDSASQAVANM 487
Query: 78 NGLRFLGKVLSV 89
NG LGK L V
Sbjct: 488 NGFTVLGKRLKV 499
>gi|307165867|gb|EFN60222.1| RNA-binding protein 40 [Camponotus floridanus]
Length = 455
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TL I HLP + D + YGA + F F ++ LA++A M+L+ L
Sbjct: 5 TLRILHLPSHLSDDRRDALLQKYGAIRTKTSRLSDKHVVTFAKFPSQQLAAEALMRLHQL 64
Query: 81 RFLGKVLSVERASK 94
G+ LSVE A K
Sbjct: 65 NIRGQYLSVEYAKK 78
>gi|339239559|ref|XP_003381334.1| transcription factor E2F5 [Trichinella spiralis]
gi|316975642|gb|EFV59050.1| transcription factor E2F5 [Trichinella spiralis]
Length = 879
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-GRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + S +GA VR S+ G L++C F F + A A +QL+
Sbjct: 468 TLLVRHLPACLTDSDKMSLLSQFGACRVRVMSSDGPLKHCAFASFRSVQEARVALLQLHQ 527
Query: 80 LRFLGKVLSVERASKPNEENKH 101
L +G L V A E++H
Sbjct: 528 LNVVGSRLVVTWA---RAEDRH 546
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + +D ++F YG +SS+ G+ R FV+F AS+A
Sbjct: 238 NFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAV 297
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN F G+ L V RA K + EE K +EA
Sbjct: 298 DELNNKDFHGQDLYVGRAQKKHEREEELRKSYEA 331
>gi|428203095|ref|YP_007081684.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
gi|427980527|gb|AFY78127.1| RRM domain-containing RNA-binding protein [Pleurocapsa sp. PCC
7327]
Length = 99
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSV--RPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ L R+F YG + P GR R FV+ G E + A
Sbjct: 1 MSIYVGNLSYEVTQEDLERVFKEYGTVNRVQMPTDRETGRPRGFAFVEMGTEAEETTAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G +++G+ L V +A KP EE
Sbjct: 61 ALDGAQWMGRDLKVNKA-KPREE 82
>gi|427720688|ref|YP_007068682.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427353124|gb|AFY35848.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 99
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD LS +F+ YG SV+ GR+R FV+ G + + A
Sbjct: 1 MSIYVGNLSYEVTQDGLSGVFAEYG--SVKRVQLPTDRDTGRVRGFGFVEMGTDAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L +K+L D I D L +FS +G + C R +N V FV F ASQA +
Sbjct: 321 LYLKNLDDGISDDQLRELFSTFG--KITSCKVMRDQNGVSKGSGFVAFSTREEASQAITE 378
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
+NG GK L V A + +E + +AQ S M+ +T
Sbjct: 379 MNGKMLSGKPLYVAFAQR--KEERKAMLQAQ-FSQMRPVPIT 417
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 13 KQETEN------LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE +N + +K+L ++ ++ L +IFS YG ++ V + G+ R F++
Sbjct: 203 KQERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFIN 262
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE--NKHKHFEAQSISSMKEAA 116
F + A +A +LNG + K RA K +E + + FE SMK+AA
Sbjct: 263 FESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFE----QSMKDAA 313
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + IK++ + D +F+ +G +SS+ G+ R FV+F A++A
Sbjct: 243 NFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAV 302
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
LNG F G+ L V RA K + EE K +EA
Sbjct: 303 DDLNGKDFRGQDLYVGRAQKKHEREEELRKSYEA 336
>gi|254414476|ref|ZP_05028242.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
gi|196178706|gb|EDX73704.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
Length = 96
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ I +L +D L +F+ YG V P GR+R FV+ +E A
Sbjct: 1 MTIYIGNLSYQATEDDLQTVFADYGTVKRVVLPTDRETGRVRGFAFVEMTDEAQEESAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
QL+G ++G+ L V +A +P + N+
Sbjct: 61 QLDGAEWMGRQLRVNKA-RPRDNNR 84
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L +K+L D I D L +FS++G + C R +N V FV F ASQA +
Sbjct: 406 LYLKNLDDGITDDQLRELFSNFG--KITSCKIMRDQNGVSKGSGFVSFSTREEASQALTE 463
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
+NG GK L V A + +E + +AQ S M+ +T
Sbjct: 464 MNGKMISGKPLYVAFAQR--KEERKAMLQAQ-FSQMRPVPMT 502
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 13 KQETEN------LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE +N + +K+L ++ ++ L ++FS YG ++ V G+ R FV+
Sbjct: 288 KQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVN 347
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE--NKHKHFEAQSISSMKEAA 116
F + A++A +LNG + K V RA K +E + + FE SMK+AA
Sbjct: 348 FESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFE----QSMKDAA 398
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQ 74
+ L +K+L D+I D L +FS+YG + C R N V FV F ASQA
Sbjct: 321 LNLYMKNLDDSIGDDQLCELFSNYG--KITSCKIMRDANGVSKGSGFVAFSTREEASQAL 378
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
++NG GK L V A + +E++ +AQ
Sbjct: 379 TEMNGKMISGKPLYVAFAQR--KEDRKAMLQAQ 409
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE EN V + +K+L ++ ++ L +IF YG ++ + G+ R F++
Sbjct: 205 KQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFIN 264
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAA 116
F + A++A +LNG + K V RA K +E + FE SMK+AA
Sbjct: 265 FKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFE----QSMKDAA 315
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-----GRLRNCVFVDFGNEPLASQAQ 74
+ L +K+L D I + L +F+ YG ++ C G R FV F A++A
Sbjct: 317 LNLYLKNLDDTISDEKLKEMFADYG--TITSCKVMRDPTGISRGSGFVAFSTPEEATRAL 374
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
++NG F GK L V A + +E + +AQ S M+ A+T
Sbjct: 375 GEMNGKMFAGKPLYVALAQR--KEERRARLQAQ-FSQMRPVAIT 415
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 13 KQETENLVT------LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQ+ EN ++ + +K+L ++ + L F YG ++ + + G+ R FV+
Sbjct: 201 KQDRENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVN 260
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
F N A++A LNG +F K V +A K +E + + + + S+KEAA
Sbjct: 261 FENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSE--REQELKGRFEQSIKEAA 311
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L +KHLPD I D L IF+ +G + ++ S G LR FV F ++ A+ A +LN
Sbjct: 291 LYVKHLPDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAMRELN 350
Query: 79 G 79
G
Sbjct: 351 G 351
>gi|380027506|ref|XP_003697464.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Apis
florea]
Length = 461
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TL I HLP + + + +F YGA + + F F ++ +A++A ++L+ L
Sbjct: 11 TLRILHLPPELSDERRNELFKKYGAIKTQTLRLSKKYTITFAKFQSQEIATEALLRLHQL 70
Query: 81 RFLGKVLSVERASK 94
G+ L+VE A K
Sbjct: 71 NVKGQYLTVEFAKK 84
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + +D +F +G +SS+ G+ R FV+F AS+A
Sbjct: 238 NFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAV 297
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
LNG F G+ L V RA K + EE K +EA
Sbjct: 298 DDLNGKDFHGQDLYVGRAQKKHEREEELRKSYEA 331
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + ++ +FS YG +S++ G+ R FV+F A++A
Sbjct: 243 NYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAV 302
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 303 EELNGKEFRGQELYVGRAQKKHEREEELRKSYEA 336
>gi|241856245|ref|XP_002416055.1| RNA binding motif-containing protein, putative [Ixodes
scapularis]
gi|215510269|gb|EEC19722.1| RNA binding motif-containing protein, putative [Ixodes
scapularis]
Length = 195
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
L + HLPD + + L +F+ YG +V C + FV E +A LN
Sbjct: 5 TKLFVGHLPDGLRTEELQELFAKYG--TVTECDV--INKYGFVHMSTEEECEEALKNLNN 60
Query: 80 LRFLGKVLSVERAS 93
F+G LSVER++
Sbjct: 61 YNFMGSTLSVERST 74
>gi|359463045|ref|ZP_09251608.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
Length = 90
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + + LS +F+ YG S+ P GR+R FV+ G++ ++A
Sbjct: 1 MSIYVGNLSYDVTEKDLSTVFAEYGTVKSAKLPTDRETGRIRGFGFVEMGDDTEEAKAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
+L G ++G+ L V +A KP E
Sbjct: 61 ELEGAEWMGRTLKVNKA-KPRE 81
>gi|410914728|ref|XP_003970839.1| PREDICTED: uncharacterized protein LOC101079913 [Takifugu rubripes]
Length = 577
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
V L + +LP QD L+++F+ YG + CS LR FV E A +A L+G
Sbjct: 42 VKLFVGNLPIDATQDELNKLFAPYG--EINTCSL--LRQYAFVTLKGEGAADRAIRHLDG 97
Query: 80 LRFLGKVLSVE--RASKPN 96
+ G+ L VE RA PN
Sbjct: 98 KEYRGRPLVVEESRARPPN 116
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++ + D +F YG +S R G+ R FV+F + AS+A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN F G+ L V RA K + EE K +EA
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEA 334
>gi|307152307|ref|YP_003887691.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
gi|306982535|gb|ADN14416.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7822]
Length = 116
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+++ + +LP + QD + +F YG +V+ +GR+R FVD ++ ++A
Sbjct: 1 MSIYVGNLPYQVTQDDIKEVFGEYG--TVKQVKLPIDRESGRVRGFAFVDLDSDAEETKA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENK 100
L+G ++G+ L V +A +P ++ +
Sbjct: 59 IEALDGAEWMGRELKVSKA-RPRQDKR 84
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ Q+ ++FS+YGA + + + G+LR FV+F + A +A
Sbjct: 219 NFTNVYVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKAC 278
Query: 75 MQLNGLRFLGKVLSVERASKPNE 97
+LN F G+ L V RA K E
Sbjct: 279 EELNDTDFKGQKLYVGRAQKKYE 301
>gi|74218798|dbj|BAE37811.1| unnamed protein product [Mus musculus]
Length = 425
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA Q
Sbjct: 322 VLYLKNLSPRVKERDLISLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQ 381
Query: 77 LNGLRFLGKVLSVERA 92
+NG + GK+L +E A
Sbjct: 382 INGYKLYGKILVIEFA 397
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L +K+L D I D L +FS++G + C R +N V FV F ASQA +
Sbjct: 406 LYLKNLDDGITDDQLRELFSNFG--KITSCKIMRDQNGVSKGSGFVSFSTREEASQALTE 463
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
+NG GK L V A + +E + +AQ S M+ +T
Sbjct: 464 MNGKMISGKPLYVAFAQR--KEERKAMLQAQ-FSQMRPVPMT 502
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 13 KQETEN------LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE +N + +K+L ++ ++ L ++FS YG ++ V G+ R FV+
Sbjct: 288 KQERDNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVN 347
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE--NKHKHFEAQSISSMKEAA 116
F + A++A +LNG + K V RA K +E + + FE SMK+AA
Sbjct: 348 FESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFE----QSMKDAA 398
>gi|434406111|ref|YP_007148996.1| RRM domain-containing RNA-binding protein [Cylindrospermum stagnale
PCC 7417]
gi|428260366|gb|AFZ26316.1| RRM domain-containing RNA-binding protein [Cylindrospermum stagnale
PCC 7417]
Length = 94
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + L +F+ YG V P GRLR FVD + +A
Sbjct: 1 MTIYVGNLSYQATEADLKSVFADYGEVKRVVLPTDRETGRLRGFAFVDMMEDSQEDKAIT 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKH 101
+L+G ++G+ L V +A KP E+N+
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPREDNRR 85
>gi|423076693|ref|ZP_17065401.1| hypothetical protein HMPREF0322_04849 [Desulfitobacterium hafniense
DP7]
gi|361852256|gb|EHL04522.1| hypothetical protein HMPREF0322_04849 [Desulfitobacterium hafniense
DP7]
Length = 112
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 12 NKQE-TENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
NKQE T N+ TL + +LP + L+ F YG + + GR R FV+ +
Sbjct: 22 NKQEVTANMATLYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFVEVED 81
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA 92
E A A+ LNG F G+ L+V A
Sbjct: 82 EDAARMAE-DLNGKDFGGRPLTVNEA 106
>gi|434404743|ref|YP_007147628.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
gi|428258998|gb|AFZ24948.1| RRM domain-containing RNA-binding protein [Cylindrospermum
stagnale PCC 7417]
Length = 102
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QDTLS +F+ YG SV+ +G+LR FV+ G E + A
Sbjct: 1 MSIYVGNLSYEVTQDTLSAVFAEYG--SVKRVQLPTDRESGQLRGFGFVEMGTEAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>gi|288541344|ref|NP_001165618.1| RNA-binding protein 41 isoform 1 [Mus musculus]
Length = 425
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA Q
Sbjct: 322 VLYLKNLSPRVKERDLISLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQ 381
Query: 77 LNGLRFLGKVLSVERA 92
+NG + GK+L +E A
Sbjct: 382 INGYKLYGKILVIEFA 397
>gi|254416097|ref|ZP_05029852.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
gi|196177030|gb|EDX72039.1| RNA-binding protein, putative [Coleofasciculus chthonoplastes PCC
7420]
Length = 95
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L ++ + LS +F+ YG +V+ GRLR FV+ G E + A
Sbjct: 1 MSIYVGNLDYSVTSEDLSEVFAEYG--TVKRVHLPTDRETGRLRGFGFVEMGTEDEEASA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
+LNG ++G+ L V +A +P E+
Sbjct: 59 ISELNGAEWMGRELKVNQA-RPRED 82
>gi|23956384|ref|NP_705814.1| RNA-binding protein 41 isoform 2 [Mus musculus]
gi|81914521|sp|Q8JZV4.1|RBM41_MOUSE RecName: Full=RNA-binding protein 41; AltName: Full=RNA-binding
motif protein 41
gi|22477722|gb|AAH37024.1| RNA binding motif protein 41 [Mus musculus]
gi|26351139|dbj|BAC39206.1| unnamed protein product [Mus musculus]
gi|26351197|dbj|BAC39235.1| unnamed protein product [Mus musculus]
gi|148691973|gb|EDL23920.1| RNA binding motif protein 41, isoform CRA_a [Mus musculus]
Length = 413
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA Q
Sbjct: 310 VLYLKNLSPRVKERDLISLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQ 369
Query: 77 LNGLRFLGKVLSVERA 92
+NG + GK+L +E A
Sbjct: 370 INGYKLYGKILVIEFA 385
>gi|148910359|gb|ABR18258.1| unknown [Picea sitchensis]
Length = 970
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
T+ + +LP + ++ L ++FS +G A +R G + FV F N +QA +
Sbjct: 697 TVYVGYLPPTMEEEQLIKLFSSFGRIVEAKVIRDDVKGSGKGYGFVKFNNIHCTAQAIVH 756
Query: 77 LNGLRFLGKVLSVERASKP 95
+NG R GK L+V + P
Sbjct: 757 MNGYRLEGKTLAVMASGWP 775
>gi|423067018|ref|ZP_17055808.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
gi|406711304|gb|EKD06505.1| RNP-1 like RNA-binding protein [Arthrospira platensis C1]
Length = 86
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 29 DAIPQDTLSRIFSHYGA--SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG 84
D P D LS +F+ YG S+ P GR R FV+ NE ++A L+G ++G
Sbjct: 4 DVTPDD-LSEVFAQYGTVKRSMIPTDRETGRSRGFGFVEMVNEDEETKAIEALDGAEWMG 62
Query: 85 KVLSVERASKPNEENKHK 102
+ L V +A +P E NK +
Sbjct: 63 RSLKVNKA-RPRENNKQR 79
>gi|321474229|gb|EFX85194.1| hypothetical protein DAPPUDRAFT_313833 [Daphnia pulex]
Length = 437
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRP-CSAGRLRN-CVFVDFGNEPLASQAQMQLN 78
TL+++ LP+ + + L+ +F ++GA +VR GR RN + V F + AS A +L+
Sbjct: 13 TLIVRRLPECLTERDLNDLFRYFGAQAVRKEKPKGRQRNSTIIVKFNSHEDASFALTRLH 72
Query: 79 GLRFLGKVLSVERA 92
L+ +GK + E A
Sbjct: 73 QLKVVGKRIVAEYA 86
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + +F+ YG +SS+ S G+ R FV+F A++A
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEA 337
>gi|338214373|ref|YP_004658434.1| RNP-1 like RNA-binding protein [Runella slithyformis DSM 19594]
gi|336308200|gb|AEI51302.1| RNP-1 like RNA-binding protein [Runella slithyformis DSM 19594]
Length = 127
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS---AGRLRNCVFVDFGNEPLASQAQM 75
+ + + ++P D L +F +G SS R G+ R FV+ N+ A QA
Sbjct: 1 MNIYVANVPFKANDDELRELFEEFGEVSSARIIMDKFTGKSRGFAFVEMPNDDEAKQAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
QLN F+GKVL V A +P E+
Sbjct: 61 QLNDFDFMGKVLVVNEA-RPRED 82
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQ 74
+ L +K+L D+I D L +FS+YG + C R N V FV F ASQA
Sbjct: 321 LNLYMKNLDDSIGDDQLCELFSNYG--KITSCKIMRDANGVSKGSGFVAFSTREEASQAL 378
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
++NG GK L V A + +E++ +AQ
Sbjct: 379 TEMNGKMISGKPLYVAFAQR--KEDRKVMLQAQ 409
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE EN V + +K+L ++ ++ L +IF YG ++ + G+ R F++
Sbjct: 205 KQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFIN 264
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAA 116
F + A++A +LNG + K V RA K +E + FE SMK+AA
Sbjct: 265 FKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFE----QSMKDAA 315
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K++ Q+ ++FS YG ++ + S G+LR F++F + A++A
Sbjct: 218 FTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVD 277
Query: 76 QLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSM 112
+LN F G+ L V RA K +E + K +E + +
Sbjct: 278 ELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKL 316
>gi|428205820|ref|YP_007090173.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
gi|428007741|gb|AFY86304.1| RNP-1 like RNA-binding protein [Chroococcidiopsis thermalis PCC
7203]
Length = 104
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L ++ L +F+ YGA V P GR+R FVD + A
Sbjct: 1 MTIYVGNLSYRATEEDLRTVFAEYGAIKRIVLPMDRETGRMRGFAFVDMDEDAQEESAIA 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+L+G ++G+ L V +A KP EE
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPREE 82
>gi|268537328|ref|XP_002633800.1| C. briggsae CBR-RBD-1 protein [Caenorhabditis briggsae]
Length = 877
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L++K+LP + L + F YG +S++ G+ R FV F +E AS A + N
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDESSASNAMAKSN 64
Query: 79 GLRFLGKVLSVER------ASKPNEENKH 101
F K L+VE A+KP +K+
Sbjct: 65 QTFFNSKRLTVEECRPFGDANKPRAWSKY 93
>gi|330933232|ref|XP_003304096.1| hypothetical protein PTT_16533 [Pyrenophora teres f. teres 0-1]
gi|311319509|gb|EFQ87793.1| hypothetical protein PTT_16533 [Pyrenophora teres f. teres 0-1]
Length = 244
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 21 TLLIKHLPDAIPQDT----LSRIFSHYG-ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
T+ + +L + + DT L+R+F +YG V S+ + + F+ F +E A +A
Sbjct: 26 TIYVNNLEERVKIDTMKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALEAVE 85
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
++NG GKV+ V RA ++E
Sbjct: 86 EMNGFEMYGKVMKVHRAKTHSDET 109
>gi|195452424|ref|XP_002073347.1| GK14083 [Drosophila willistoni]
gi|194169432|gb|EDW84333.1| GK14083 [Drosophila willistoni]
Length = 447
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP D L R+FS+YGA V C + C FV N +A A LN
Sbjct: 3 TAKVFVGSLPPGCKPDELRRLFSNYGA--VVECDV--MNRCGFVHLENTEMADAAIAALN 58
Query: 79 GLRFLGKVLSVERASKPNEENK 100
G+ F G+ + VE +P E +
Sbjct: 59 GIEFKGQNIVVE-PGRPKERGR 79
>gi|189205961|ref|XP_001939315.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975408|gb|EDU42034.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 244
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 21 TLLIKHLPDAIPQDT----LSRIFSHYG-ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
T+ + +L + + DT L+R+F +YG V S+ + + F+ F +E A +A
Sbjct: 26 TIYVNNLEERVKIDTMKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALEAVE 85
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
++NG GKV+ V RA ++E
Sbjct: 86 EMNGFEMYGKVMKVHRAKTHSDET 109
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L IK+L D+I D L ++FS +G ++ C R N + FV F AS+A M+
Sbjct: 308 LYIKNLDDSIGDDRLKQLFSPFG--TITSCKVMRDPNGISRGSGFVAFSTPEEASKALME 365
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
+NG + K L V A + +E++ +AQ
Sbjct: 366 MNGKMVVSKPLYVALAQR--KEDRRARLQAQ 394
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE E+ + + +K+L + ++ L + F YG ++ V G+ + FV+
Sbjct: 190 KQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVN 249
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE-ENKHK-HFEAQSISSMKEAA 116
F N A+ A LNG +F K V +A K NE EN+ K FE SMKEAA
Sbjct: 250 FENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFE----QSMKEAA 300
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 1 MATAPFDSGPQNKQETEN----LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSA 53
+ PF + + E +N + IK+ D + + L IFSH+G + V S
Sbjct: 167 LFVGPFKNRKDRQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSR 226
Query: 54 GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
GR + FV F + A +A +NG G+ L V RA K E
Sbjct: 227 GRSKGFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAE 270
>gi|388854599|emb|CCF51756.1| uncharacterized protein [Ustilago hordei]
Length = 1235
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC--SAGRLRNCVFVDFGNE 67
Q EN L + LP I + L F YG + VR + G LR FVDF N
Sbjct: 944 QRSDANENAKELFVSGLPRNITDEELKTYFEAYGKVTGVRLLRNAEGGLRGIGFVDFENA 1003
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
A++A +LN ++ K +SV A + +K
Sbjct: 1004 LDATRAMKELNSTKWRAKTISVTLADSRSSNSKQ 1037
>gi|440682182|ref|YP_007156977.1| RNP-1 like RNA-binding protein [Anabaena cylindrica PCC 7122]
gi|428679301|gb|AFZ58067.1| RNP-1 like RNA-binding protein [Anabaena cylindrica PCC 7122]
Length = 114
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD L+++F+ YG SV+ GR+R FV+ G E + A
Sbjct: 1 MSVYVGNLSYEVTQDALTQVFAEYG--SVKRVQIPTDRETGRVRGFAFVEMGTEAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|340369585|ref|XP_003383328.1| PREDICTED: RNA-binding protein 40-like [Amphimedon queenslandica]
Length = 434
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 22 LLIKHLPDAI-PQDTLSRIFSHYGASSVRPCSA-GRLRNCVFVDFGNEPLASQAQMQLNG 79
LL++ LP+ + P+D S + +GA V S G +RNC F F N A A ++L+
Sbjct: 7 LLVRKLPNFLRPEDKES-LLKFFGAIEVTVMSQNGAMRNCAFATFANPADARMAMIKLHQ 65
Query: 80 LRFLGKVLSVERASKPNE 97
L G VL V AS +E
Sbjct: 66 LNVFGSVLIVVYASPQSE 83
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQ 74
+ L +K+L D+I D L +FS++G + C R +N + FV F ASQA
Sbjct: 322 LNLYLKNLDDSIGDDQLRELFSNFG--KITSCKVMRDQNGLSKGSGFVAFSTREEASQAL 379
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEA 115
++NG GK L V A + +E++ +AQ S M+ A
Sbjct: 380 TEMNGKMISGKPLYVAFAQR--KEDRKAMLQAQ-FSQMRPA 417
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L ++ ++ L +IF YG ++ V G+ R F++F N AS+A +LN
Sbjct: 221 VFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELN 280
Query: 79 GLRFLGKVLSVERASKPNE 97
G + K V RA K +E
Sbjct: 281 GKKINDKEWYVGRAQKKSE 299
>gi|428218969|ref|YP_007103434.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
gi|427990751|gb|AFY71006.1| RNP-1 like RNA-binding protein [Pseudanabaena sp. PCC 7367]
Length = 88
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+T+ I +L Q + IF+ YG+ + GR+R FVD +E A
Sbjct: 1 MTIYIGNLSYQATQQDVEEIFNDYGSVKRVQLITDRETGRMRGFGFVDMSDEDEEDNAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
LNG ++G+ L V +A +P E
Sbjct: 61 NLNGATWMGRALKVNKA-RPRE 81
>gi|307210931|gb|EFN87246.1| Tetratricopeptide repeat protein 26 [Harpegnathos saltator]
Length = 1038
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TL I HLP + + + YGA R F F ++ LA++A + L+ L
Sbjct: 17 TLRILHLPPQLSDSRRNSLLQRYGAIKTRTLRRSSKYTVTFAKFASQELATEALLHLHQL 76
Query: 81 RFLGKVLSVERASK 94
G+ LSVE A K
Sbjct: 77 NVKGRYLSVEYAKK 90
>gi|440684828|ref|YP_007159623.1| RNP-1 like RNA-binding protein [Anabaena cylindrica PCC 7122]
gi|428681947|gb|AFZ60713.1| RNP-1 like RNA-binding protein [Anabaena cylindrica PCC 7122]
Length = 102
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD L+ +F+ YG SV+ G+LR FV+ G + + A
Sbjct: 1 MSIYVGNLSYEVTQDNLTAVFAEYG--SVKRVQLPTDRETGKLRGFGFVEMGTDEEETTA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IDALDGAEWMGRDLKVNKA-KPRED 82
>gi|358387438|gb|EHK25033.1| hypothetical protein TRIVIDRAFT_54648 [Trichoderma virens Gv29-8]
Length = 1024
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 8 SGPQNKQETENLVT----LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCV 60
S P K+ E V + + L + +D + IFS YG S V +G+ R
Sbjct: 742 SDPNRKKSREGAVAEGREVHVSGLSPSATEDEIREIFSKYGTISRINVPRNISGKGRGFA 801
Query: 61 FVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPN 96
FVDF + A +A +LN +FL ++L VE + N
Sbjct: 802 FVDFATKDEAEKAASELNKTKFLNQILHVEISKASN 837
>gi|451856476|gb|EMD69767.1| hypothetical protein COCSADRAFT_155918 [Cochliobolus sativus
ND90Pr]
Length = 244
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 21 TLLIKHLPDAIPQDT----LSRIFSHYG-ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
T+ + +L + + DT L+R+F +YG V S+ + + F+ F +E A +A
Sbjct: 26 TIYVNNLEERVKIDTMKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALEAVE 85
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
++NG GKV+ V RA ++E
Sbjct: 86 EMNGFEMYGKVMRVHRAKTHSDET 109
>gi|49618989|gb|AAT68079.1| nucleolin [Danio rerio]
Length = 667
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLA 70
+NK+E + TL +K+LP +I QD L IF V + G R V+++F E +A
Sbjct: 331 ENKKE-RDARTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTSRGIVYIEFKTEAIA 389
Query: 71 SQAQMQLNGLRFLGKVLSVE 90
+A + G G+ + V+
Sbjct: 390 EKALEEAQGSDVQGRSIIVD 409
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+LP + + L +FS +G + V +G R FV+F A +A M
Sbjct: 190 FTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVM 249
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
+NG++ G++L V RA K E
Sbjct: 250 DMNGMQVSGRLLYVGRAQKRGE 271
>gi|298490358|ref|YP_003720535.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298232276|gb|ADI63412.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 111
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD L+++F+ YG SV+ GR+R FV+ ++ + A
Sbjct: 1 MSVYVGNLSYEVTQDALTQVFAEYG--SVKRVQIPTDRETGRVRGFAFVEMSSDAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|392427255|ref|YP_006468249.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
acidiphilus SJ4]
gi|391357218|gb|AFM42917.1| RRM domain-containing RNA-binding protein [Desulfosporosinus
acidiphilus SJ4]
Length = 82
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS---AGRLRNCVFVDFGNEPLASQAQ 74
+ TL + +LP D L FS+YG S R + GR R F++ G E AQ
Sbjct: 1 MTTLYVGNLPWNTTADELGEFFSNYGHVESSRIITDRETGRSRGFGFIEVGEEDAERMAQ 60
Query: 75 MQLNGLRFLGKVLSVERASKPNE 97
+LNG F G+ L+V A KP +
Sbjct: 61 -ELNGKDFGGRPLTVNEA-KPKQ 81
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L + + L +IFS YGA + V G+ R FV+F + A+ A
Sbjct: 211 FTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVE 270
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
+LNG+ F KV V RA + E
Sbjct: 271 KLNGMTFSDKVWYVGRAQRKGE 292
>gi|428298449|ref|YP_007136755.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
gi|428234993|gb|AFZ00783.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
Length = 95
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + L +F+ YG V P +GRLR FVD + A
Sbjct: 1 MTIYVGNLSYRATEADLRAVFADYGEVKRVVLPTDRESGRLRGFAFVDMNEDAQEDSAIA 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHF 104
+L+G ++G+ L V +A KP E+++ ++
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPREDDRRGNW 88
>gi|403343577|gb|EJY71122.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 117
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
+ +++LP I D L IF YGA +R +AG+ + FV + + A A LNG
Sbjct: 19 VFVRNLPFKITSDELFDIFGKYGALRQIRKGNAGKTKGTAFVVYEDIYDAKNAVDHLNGF 78
Query: 81 RFLGKVLSVERASKPNEENK 100
GK L + +PN+ NK
Sbjct: 79 NVAGKYL-ICLYYQPNKLNK 97
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 13 KQETENLVT------LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQ+ EN + +K+L ++ +D L IF YG ++ V G+ + FV+
Sbjct: 34 KQDRENTANSTKFNNVFVKNLSESTTEDNLLEIFGEYGNITSAVVMREGDGKSKCFGFVN 93
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
F + A++A +LNG +F GK V +A K +E + + + M+EAA
Sbjct: 94 FEDPEHAAKAVKELNGKKFDGKEWYVGKAQKKSE--REMELKGRFEQRMQEAA 144
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L +K+L D+I D L +FS +G S+ C R N V FV F + AS+A +
Sbjct: 152 LYLKNLDDSIGDDKLRELFSEFG--SITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAE 209
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
+NG K L V A + +E++ +AQ S M+ A+
Sbjct: 210 MNGKMIGSKPLYVALAQR--KEDRRARLQAQ-FSQMRPVAI 247
>gi|392395169|ref|YP_006431771.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390526247|gb|AFM01978.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 116
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 12 NKQE-TENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
NKQE T N+ TL + +LP + LS F YG + + GR R FV+ +
Sbjct: 26 NKQEVTANMATLYVGNLPWNTTSEDLSSFFGQYGQVISSRIITDRETGRSRGFGFVEVED 85
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA 92
E A+ LNG F G+ L+V A
Sbjct: 86 EDATRMAE-DLNGKDFGGRPLTVNEA 110
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + IK++ D +F YG +SS+ G+ R FV+F A++A
Sbjct: 240 NFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 299
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+L+G F G+ L V RA K + EE K +EA
Sbjct: 300 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEA 333
>gi|358394186|gb|EHK43587.1| hypothetical protein TRIATDRAFT_85620 [Trichoderma atroviride IMI
206040]
Length = 1057
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 8 SGPQNKQETENLVT----LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCV 60
S P K+ E V + + L + +D + IFS YG + V G+ R
Sbjct: 744 SDPNRKRNREGAVAEGREVHVSGLGPSTTEDEIREIFSKYGTIARINVPRSDNGKGRGFA 803
Query: 61 FVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPN 96
F+DF + A +A +LN ++++ K+L VE SKP+
Sbjct: 804 FIDFETKDQAEKAASELNKIKYVNKILQVE-ISKPS 838
>gi|218437654|ref|YP_002375983.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
gi|218170382|gb|ACK69115.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7424]
Length = 110
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + ++P + QD + +F YG V+ P +GR+R FVD E + A
Sbjct: 1 MSIYVGNIPYQVTQDDIKEVFGEYGTVKQVKLPVDRESGRVRGFAFVDLDTEDQENSAIE 60
Query: 76 QLNGLRFLGKVLSVERA 92
L+G ++G+ L V +A
Sbjct: 61 ALDGAEWMGRELKVSKA 77
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 1 MATAPFDSGPQNKQETEN----LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSA 53
+ PF + + + E +N + IK+ D + + L +FS YG + V S+
Sbjct: 167 LFVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSS 226
Query: 54 GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
G+ + FV F A +A +NG G+++ V RA K E
Sbjct: 227 GKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAE 270
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNE 67
QNK + IK+ D + + L+ +FS YG + V S+G+ + FV F +
Sbjct: 183 QNK--AHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSH 240
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G++L V RA K E
Sbjct: 241 EAAKRAVEEMNGKDINGQLLFVGRAQKKAE 270
>gi|432896166|ref|XP_004076291.1| PREDICTED: uncharacterized protein LOC101157077 [Oryzias latipes]
Length = 515
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
V L + +LP + +S+IFS YG + CS LR FV E A +A L+G
Sbjct: 6 VKLFVGNLPIDATHEEISKIFSPYG--EINTCSL--LRQYAFVTLKGEGAADRAIRHLDG 61
Query: 80 LRFLGKVLSVE--RASKPN 96
+ G+ L VE RA PN
Sbjct: 62 KEYRGRPLVVEESRARPPN 80
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQ 72
T + +K+LP I +D L + F +G S V +G R FV+F A+
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 73 AQMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSISSMKEA 115
A ++NG+ VL V RA K + EE + FE + I+ +++
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKS 329
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEP 68
N+ E L +K+L D++ + L +FS YG +S V G R FV + N
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPE 383
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEA 106
A +A ++NG K L + A + +E++ H +A
Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQR--KEDRRAHLQA 419
>gi|390354454|ref|XP_791429.3| PREDICTED: uncharacterized protein LOC586560 [Strongylocentrotus
purpuratus]
Length = 365
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
ENL +L I +L + + L +F YG SS+R S + C FV++ + +AS+A
Sbjct: 191 ENLKSLWIGNLQPTVTEKELKDLFKPYGEVSSMRRMSE---KFCAFVNYKDPRMASKAMD 247
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMK 113
+L G GK L ++ P E+ + + Q M+
Sbjct: 248 KLQGRELHGKFLLIKFPDNPIEQQNAQANDHQEYVDMR 285
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQ 72
T + +K+LP I +D L + F +G S V +G R FV+F A+
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 73 AQMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSISSMKEA 115
A ++NG+ VL V RA K + EE + FE + I+ +++
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKS 329
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEP 68
N+ E L +K+L D++ + L +FS YG +S V G R FV + N
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPE 383
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEA 106
A +A ++NG K L + A + +E++ H +A
Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQR--KEDRRAHLQA 419
>gi|374586124|ref|ZP_09659216.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
gi|373874985|gb|EHQ06979.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
Length = 102
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+ + + +LP D L IF+ +G A P GR R FV+ N+ AS+A
Sbjct: 1 MNIYVGNLPFRASSDELQNIFAAHGTVARVTIPVDRETGRSRGFAFVEMPNDAEASEAIN 60
Query: 76 QLNGLRFLGKVLSVERA 92
LNG F+G++L V A
Sbjct: 61 SLNGFEFMGRMLKVNEA 77
>gi|427738521|ref|YP_007058065.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
gi|427373562|gb|AFY57518.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
Length = 91
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + ++ L +IF YG S P AGR+R FV+ GN+ + A
Sbjct: 1 MSIYVGNLSYEVVEEELKQIFLEYGEVKSIYLPMDRDAGRIRGFAFVEMGNDEQETTAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E
Sbjct: 61 SLDGAEWMGRSLRVNKA-KPKPE 82
>gi|304055|gb|AAA17426.1| RNA-binding protein [Anabaena sp.]
Length = 103
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +D+L+ +F+ YG SV+ GR+R FV+ G++ + A
Sbjct: 1 MSVYVGNLSYDVTEDSLNAVFAEYG--SVKRVQLPTDRETGRMRGFGFVEMGSDAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|17229579|ref|NP_486127.1| RNA-binding protein RbpA2 [Nostoc sp. PCC 7120]
gi|75909339|ref|YP_323635.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|17131178|dbj|BAB73786.1| RNA-binding protein RbpA2 [Nostoc sp. PCC 7120]
gi|75703064|gb|ABA22740.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 103
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +D+L+ +F+ YG SV+ GR+R FV+ G++ + A
Sbjct: 1 MSVYVGNLSYDVTEDSLNAVFAEYG--SVKRVQLPTDRETGRMRGFGFVEMGSDAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQ 72
T + +K+LP I +D L + F +G S V +G R FV+F A+
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 73 AQMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSISSMKEA 115
A ++NG+ VL V RA K + EE + FE + I+ +++
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKS 329
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEP 68
N+ E L +K+L D++ + L +FS YG +S V G R FV + N
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPE 383
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
A +A ++NG K L + A + +E++ H + ++ M
Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQR--KEDRRAHLQIRAPGPM 425
>gi|328779176|ref|XP_623250.3| PREDICTED: RNA-binding protein 40-like [Apis mellifera]
Length = 430
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
TL I HLP + + + +F YGA + + F F ++ +A++A ++L+ L
Sbjct: 11 TLRILHLPPELSDERRNELFKKYGAVKTQTLRLSKKYTITFAKFQSQEIATEALLRLHQL 70
Query: 81 RFLGKVLSVERA 92
G+ L+VE A
Sbjct: 71 NVKGQYLTVEFA 82
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + D +F +G +SS+ G+ R FV+F A++A
Sbjct: 240 NFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAV 299
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
LNG F G+ L V RA K + EE + +EA
Sbjct: 300 DDLNGKDFRGQDLYVGRAQKKHEREEELRRSYEA 333
>gi|427719763|ref|YP_007067757.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
gi|427352199|gb|AFY34923.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
Length = 94
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + L +F+ YG V P GRLR FVD + A +
Sbjct: 1 MTIYVGNLSYRATEADLRAVFADYGEVKRVVLPTDRETGRLRGFAFVDMNEDAQEDAAIV 60
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
+L+G ++G+ L V +A KP E+N
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPREDN 83
>gi|404403808|ref|ZP_10995392.1| RNP-1 like RNA-binding protein [Alistipes sp. JC136]
Length = 105
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + + HL + L +F+ +G A+ + GR R FV+ ++ A +A
Sbjct: 1 MNIYVSHLSWGTSSEGLGNLFAQFGEVASANVITDRETGRSRGFGFVEMPDDEQARKAME 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
QLNG F G+ ++V A +P EE
Sbjct: 61 QLNGTNFEGQTITVNEA-RPREE 82
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 11 QNKQETEN---LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
Q + T N + +K+L ++ D L IF +G ++ V G+ + FV+F
Sbjct: 207 QERDSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNF 266
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
N A++A LNG F K V RA K +E + + Q S+KEAA
Sbjct: 267 ENADDAAKAVESLNGKTFDDKEWFVGRAQKKSE--REMELKVQYEQSLKEAA 316
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQ 72
T + +K+LP I +D L + F +G S V +G R FV+F A+
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 73 AQMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSISSMKEA 115
A ++NG+ VL V RA K + EE + FE + I+ +++
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKS 329
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEP 68
N+ E L +K+L D++ + L +FS YG +S V G R FV + N
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNPE 383
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEA 106
A +A ++NG K L + A + +E++ H +A
Sbjct: 384 EALRALSEMNGKMIGKKPLYIALAQR--KEDRRAHLQA 419
>gi|118381422|ref|XP_001023873.1| hypothetical protein TTHERM_00248430 [Tetrahymena thermophila]
gi|89305639|gb|EAS03627.1| hypothetical protein TTHERM_00248430 [Tetrahymena thermophila
SB210]
Length = 284
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNC 59
P PQN T+ + HLP + ++ L F YG R R +
Sbjct: 116 VPIKDTPQN-------CTIYVGHLPYGLLEEQLKTYFEQYGTIVNIKVARSRKTARSKGF 168
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89
F+ F +A+ A +NG LGKVL V
Sbjct: 169 AFIQFEQPEVAAIAAKAMNGHMVLGKVLEV 198
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQL 77
V L +K+L D + + L + FS +G +S R S GR + FV F + A++A ++
Sbjct: 295 VNLYVKNLDDVVDDERLRKEFSQFGTITSARVMSEGGRSKGFGFVCFSSPEEATKAVTEM 354
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
NG + K L V A + +E++ H +Q + M
Sbjct: 355 NGRIIVSKPLYVALAQR--KEDRRAHLASQYMQRM 387
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ D +F YG +SS+ G+ R FV+F A++A
Sbjct: 239 NFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAV 298
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+L+G F G+ L V RA K + EE K +EA
Sbjct: 299 EELHGKDFRGQDLYVGRAQKKHEREEELRKSYEA 332
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSA--GRLRNCVFVDFGNEPLASQA 73
+ + IK+ + + D L IFS YG A S+R + G+ R FV F A +A
Sbjct: 188 KEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRA 247
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
++NG GK++ V RA K E + FE MK+ +TR Q
Sbjct: 248 VDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFE-----QMKQDRMTRYQ 292
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|354568213|ref|ZP_08987379.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353541178|gb|EHC10648.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 103
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + ++ L +F+ YG V P GRLR FV+ + A
Sbjct: 12 MTIYVGNLSYSATEEDLKAVFAEYGQVKRVVLPTDRDTGRLRGFAFVEMNEDTQEEAAIT 71
Query: 76 QLNGLRFLGKVLSVERASKPNEENKH 101
+L+G ++G+ L V +A +P E+N+
Sbjct: 72 ELDGAEWMGRQLKVNKA-RPREDNRR 96
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNE 67
QNK + IK+ D + + L +FS YG + V S+G+ + FV F +
Sbjct: 178 QNK--AHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSH 235
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G++L V RA K E
Sbjct: 236 EAAKRAVEEMNGKDINGQLLFVGRAQKKAE 265
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA-SSVRPC-SAGRLRNCVFVDFGNEPLASQAQMQLNG 79
L IK+L + I + L R FS +G+ S V+ GR + + F + A++A ++NG
Sbjct: 290 LYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLICFSSAEEATKAMTEMNG 349
Query: 80 LRFLG-KVLSVERASKPNE 97
R LG K L++ A KP E
Sbjct: 350 -RILGSKPLNIALAQKPXE 367
>gi|427740185|ref|YP_007059729.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
gi|427375226|gb|AFY59182.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC
7116]
Length = 95
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + Q+ LS++F+ YG SV+ GR R FV+ +E S A
Sbjct: 1 MSIYVGNLSYDVTQEDLSKVFAEYG--SVKRVQLPTDRETGRSRGFGFVEMQSEDEESSA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ + V +A +P EE
Sbjct: 59 IQALDGAEWMGRAMKVNKA-RPREE 82
>gi|220909892|ref|YP_002485203.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219866503|gb|ACL46842.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 98
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ L R F YG SV P GR+R FV+ N P + A
Sbjct: 1 MSIYVGNLSYDVTQNDLVRAFGEYGNVKSVHLPTDRETGRVRGFAFVEMENTPEETAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
L+G ++G+ L V +A KP E+ +
Sbjct: 61 ALDGAEWMGRDLKVNKA-KPREDKR 84
>gi|56753389|gb|AAW24898.1| SJCHGC05090 protein [Schistosoma japonicum]
Length = 274
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQM 75
L +K+L A+ + L ++F YG S+R + RN V +++F N AS+A +
Sbjct: 102 LFVKNLDKAVKNEDLEKLFRQYGNVVSIRLVT---FRNGVPKGHAYIEFENADDASRALI 158
Query: 76 QLNGLRFLGKVLSVERASKP 95
NGL F K LSV + P
Sbjct: 159 ATNGLEFRNKTLSVSISEPP 178
>gi|427710388|ref|YP_007052765.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427362893|gb|AFY45615.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 106
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD L+ +F+ YG SV+ GRLR FV+ ++ + A
Sbjct: 1 MSIYVGNLSYEVTQDALNSVFAEYG--SVKRIQIPTDRETGRLRGFAFVEMSSDAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IDALDGAEWMGRDLKVNKA-KPRED 82
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPL 69
+ + + IK+ D + + L +FS YG + V S+G+ + FV F +
Sbjct: 282 RNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 341
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G++L V RA K +E
Sbjct: 342 AKKAVEEMNGKDINGQLLFVGRAQKKSE 369
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPC-SAGRLRNCVFVDFGNEPLASQAQMQL 77
+ L IK+L D I + L R FS +G+ S V+ GR + + F + A++A ++
Sbjct: 392 MKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGRSKGFGLICFSSPEEATKAMAEM 451
Query: 78 NGLRFLG-KVLSVERASKPNEENKH 101
NG R LG K L + A KP E N +
Sbjct: 452 NG-RILGSKPLYIALAQKPXERNAY 475
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQ 74
+ L +K+L D+I D L +FS+YG + C R N V FV F ASQA
Sbjct: 320 LNLYMKNLDDSIGDDQLCELFSNYG--KITSCKIMRDANGVSKGSGFVAFSTREEASQAL 377
Query: 75 MQLNGLRFLGKVLSVERASK 94
++NG GK L V A +
Sbjct: 378 TEMNGKMISGKPLYVAFAQR 397
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE EN V + +K+L ++ ++ L +IF YG ++ + G+ R F++
Sbjct: 204 KQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFIN 263
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAA 116
F + A++A +LNG + K V RA K +E + FE SMK+AA
Sbjct: 264 FKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFE----QSMKDAA 314
>gi|427416267|ref|ZP_18906450.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425758980|gb|EKU99832.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 89
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + + L+ +F+ YG +VR GRLR FV G E ++A
Sbjct: 1 MSIYVGNLSYEVIEAELTAVFAKYG--TVRSIYLPTDRDTGRLRGFGFVSMGAESEETEA 58
Query: 74 QMQLNGLRFLGKVLSVERASKP 95
LNG ++G+ L V +A P
Sbjct: 59 IEALNGTEWMGRELKVNKAKTP 80
>gi|17542530|ref|NP_502432.1| Protein RBD-1 [Caenorhabditis elegans]
gi|3880097|emb|CAB05631.1| Protein RBD-1 [Caenorhabditis elegans]
Length = 872
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L++K+LP + L + F YG +S++ G+ R FV F +E AS A + N
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSN 64
Query: 79 GLRFLGKVLSVER------ASKPNEENKH 101
F K L+VE A+KP +K+
Sbjct: 65 QTFFNSKKLTVEECRPFGDANKPRAWSKY 93
>gi|189238942|ref|XP_971700.2| PREDICTED: similar to GA20673-PA [Tribolium castaneum]
Length = 364
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
+ +E + + LP+ + D L +F+ YGA + C C F+ + LA +A
Sbjct: 3 RRSETTTKVFVGSLPNGVTTDDLRSLFAPYGA--IAECDIAN--RCGFLHLEDHDLAMKA 58
Query: 74 QMQLNGLRFLGKVLSVERA 92
+LNG F+G +SVE+
Sbjct: 59 IAELNGTNFMGGRISVEKG 77
>gi|443326242|ref|ZP_21054903.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC
7305]
gi|442794168|gb|ELS03594.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC
7305]
Length = 101
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + ++P + ++ LS +F+ YG P +GR+R FV+ NE +A
Sbjct: 1 MSIYVGNIPYKVTEEDLSGVFADYGTVKRVYLPTDRESGRMRGFGFVEMANEAEEDKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
L+G ++G+ L V +A +P E
Sbjct: 61 TLDGAEWMGRELRVNKA-RPRE 81
>gi|308450796|ref|XP_003088431.1| hypothetical protein CRE_22247 [Caenorhabditis remanei]
gi|308247287|gb|EFO91239.1| hypothetical protein CRE_22247 [Caenorhabditis remanei]
Length = 901
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L++K+LP + L + F YG +S++ G+ R FV F +E AS A + N
Sbjct: 14 LIVKNLPSTCTEQQLRKFFEKYGKISDASLKYTKEGKFRGFAFVGFLDEGSASNAIAKSN 73
Query: 79 GLRFLGKVLSVER------ASKPNEENKH 101
F K L+VE A+KP +K+
Sbjct: 74 QTFFNSKRLTVEECRPFGDANKPRAWSKY 102
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L +++LP A +D L +F YG S V G + V+F A A L
Sbjct: 305 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGSCKGFAIVEFVFPEAAVAAYSAL 364
Query: 78 NGLRFLGKVLSV----ERASKPNEEN 99
+G F G+++ + E+ KP EE+
Sbjct: 365 DGYVFKGRMMHIIAGDEKRDKPTEED 390
>gi|434389333|ref|YP_007099944.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
gi|428020323|gb|AFY96417.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
Length = 93
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD L++ F+ YG V+ GRLR FV+ + S A
Sbjct: 1 MSIYVGNLSYEVTQDDLTQTFAEYG--KVKRVQLPTDRETGRLRGFAFVEMETDAEESAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP EE
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPREE 82
>gi|239938028|gb|ACS36113.1| RNA-binding protein Elav1 [Capitella teleta]
Length = 143
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP ++ QD + +FS G +R + G+ FV++ + AS+A L
Sbjct: 30 LIVNYLPQSMTQDDIRSLFSSIGEVESCKLIRDKATGQSLGYGFVNYKRQEDASKAITSL 89
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 90 NGLRLQNKTIKVSVA-RPSSE 109
>gi|428313300|ref|YP_007124277.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428254912|gb|AFZ20871.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 97
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L ++ L +F+ YG V P GR+R FV+ E A
Sbjct: 1 MTIYVGNLSYQATEEDLRTVFADYGTVKRVVLPTDRETGRMRGFAFVEMTEETQEDSAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
+L+G ++G+ L V +A +P E+N+
Sbjct: 61 ELDGAEWMGRQLRVNKA-RPKEDNR 84
>gi|308491929|ref|XP_003108155.1| CRE-RBD-1 protein [Caenorhabditis remanei]
gi|308249003|gb|EFO92955.1| CRE-RBD-1 protein [Caenorhabditis remanei]
Length = 888
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L++K+LP + L + F YG +S++ G+ R FV F +E AS A + N
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGKISDASLKYTKEGKFRGFAFVGFLDEGSASNAIAKSN 64
Query: 79 GLRFLGKVLSVER------ASKPNEENKH 101
F K L+VE A+KP +K+
Sbjct: 65 QTFFNSKRLTVEECRPFGDANKPRAWSKY 93
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L +++LP A +D L +F YG S V G + V+F A A L
Sbjct: 291 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGSCKGFAIVEFVFPEAAVAAYSAL 350
Query: 78 NGLRFLGKVLSV----ERASKPNEEN 99
+G F G+++ + E+ KP EE+
Sbjct: 351 DGYVFKGRMMHIIAGDEKRDKPTEED 376
>gi|432853222|ref|XP_004067600.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Oryzias latipes]
Length = 346
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
Q ++ + L++ +LP ++ QD L +FS G A +R AG FV+F N
Sbjct: 22 QMMEDDDAQTNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVN 81
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA 92
A +A LNGLR K + V A
Sbjct: 82 PNDAERAISTLNGLRLQSKTIKVSFA 107
>gi|428779944|ref|YP_007171730.1| RRM domain-containing RNA-binding protein [Dactylococcopsis
salina PCC 8305]
gi|428694223|gb|AFZ50373.1| RRM domain-containing RNA-binding protein [Dactylococcopsis
salina PCC 8305]
Length = 95
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L ++ QD LS +F+ YG +V+ GR+R FV+ +E S A
Sbjct: 1 MSIYVGNLDYSVTQDDLSEVFAEYG--TVKRVHLPTDRETGRMRGFGFVEMASETEESNA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNE 97
+L+G ++G+ L V A +P E
Sbjct: 59 ISELDGAEWMGRELKVNPA-RPRE 81
>gi|432853220|ref|XP_004067599.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Oryzias latipes]
Length = 335
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
Q ++ + L++ +LP ++ QD L +FS G A +R AG FV+F N
Sbjct: 22 QMMEDDDAQTNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVN 81
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA 92
A +A LNGLR K + V A
Sbjct: 82 PNDAERAISTLNGLRLQSKTIKVSFA 107
>gi|196009462|ref|XP_002114596.1| hypothetical protein TRIADDRAFT_58601 [Trichoplax adhaerens]
gi|190582658|gb|EDV22730.1| hypothetical protein TRIADDRAFT_58601 [Trichoplax adhaerens]
Length = 466
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-GRLRNCVFVDFGNEPLASQAQMQLNGL 80
LLI++LP + + S++GA+ V G+++NC F NE A QA +L+ L
Sbjct: 6 LLIRYLPSIASASDIKELLSNFGATHVHYFGQHGKMKNCAIAKFDNENTAKQALQRLHQL 65
Query: 81 RFLGK----VLSVERA 92
+ + V + E+A
Sbjct: 66 QIFDQRLVAVYTTEKA 81
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFS---------HYGASSVRPCSAGRLRNCVF 61
QN + E L IK+L D + + L I+S H VR + GR++ F
Sbjct: 369 QNYERKEPTGRLYIKNLSDKVKESDLIYIYSRFINKDDNSHLDRFDVRLLTRGRMKGQAF 428
Query: 62 VDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
V+ +E +A++A + +G GK + V+ A
Sbjct: 429 VNLPDEVVATEAVNETHGYVLHGKPMIVDFA 459
>gi|410928271|ref|XP_003977524.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Takifugu rubripes]
Length = 358
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP ++ Q+ L +FS G A +R AG FV+F N A +A L
Sbjct: 57 LIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFVNPSDAVRAINTL 116
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K L V A +P+ E
Sbjct: 117 NGLRLQSKTLKVSYA-RPSSE 136
>gi|410928269|ref|XP_003977523.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Takifugu rubripes]
Length = 334
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP ++ Q+ L +FS G A +R AG FV+F N A +A L
Sbjct: 33 LIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGHSLGYGFVNFVNPSDAVRAINTL 92
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K L V A +P+ E
Sbjct: 93 NGLRLQSKTLKVSYA-RPSSE 112
>gi|432853218|ref|XP_004067598.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Oryzias latipes]
Length = 356
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
Q ++ + L++ +LP ++ QD L +FS G A +R AG FV+F N
Sbjct: 43 QMMEDDDAQTNLIVNYLPQSMTQDELRSLFSSVGEVESAKLIRDKVAGHSLGYGFVNFVN 102
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA 92
A +A LNGLR K + V A
Sbjct: 103 PNDAERAISTLNGLRLQSKTIKVSFA 128
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSA--GRLRNCVFVDFGNEPLASQA 73
+ + IK+ D + + L +FS YG A S+R + G+ R FV F A +A
Sbjct: 188 KEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKA 247
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
++NG GK++ V RA K E + FE MK+ +TR Q
Sbjct: 248 VDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFE-----QMKQDRMTRYQ 292
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|359463214|ref|ZP_09251777.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
Length = 99
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 19 LVTLLIKHLP-DAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLAS 71
+++ I +L DA QD L+ +F+ YG +V+ GR R FV+ GN+ +
Sbjct: 10 FMSIYIGNLSFDATEQD-LNAVFAEYG--TVKQVKMPTDRETGRKRGFAFVEMGNDAEEA 66
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
+A +L G ++G+ L V +A KP E
Sbjct: 67 KAIDELEGAEWMGRTLKVNKA-KPRE 91
>gi|427734808|ref|YP_007054352.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC 7116]
gi|427369849|gb|AFY53805.1| RRM domain-containing RNA-binding protein [Rivularia sp. PCC 7116]
Length = 98
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + L +F+ YG + V P GR+R FVD E +A
Sbjct: 1 MTIYVGNLSYRATEADLRAVFTDYGEVTRVVLPTDRETGRMRGFAFVDLSEESQEDEAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
+L+G ++G+ + V +A KP E+++
Sbjct: 61 ELDGAEWMGRQIRVNKA-KPKEDSR 84
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + + ++F +G +SS+ G+ R FV+F A +A
Sbjct: 238 NFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAV 297
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 298 EELNGKDFRGQDLYVGRAQKKHEREEELRKSYEA 331
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + + +F YG +SS+ G+ R FV+F A +A
Sbjct: 238 NFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAV 297
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 298 DELNGNDFRGQELYVGRAQKKHEREEELRKSYEA 331
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSA--GRLRNCVFVDFGNEPLASQA 73
+ + IK+ D + + L +FS YG A S+R + G+ R FV F A +A
Sbjct: 188 KEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKA 247
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
++NG GK++ V RA K E + FE MK+ +TR Q
Sbjct: 248 VDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFE-----QMKQDRMTRYQ 292
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-----AGRLRNCVFVDFGNEPLASQAQ 74
V L IK+L D+I D L +FS +G ++ C +G R FV F AS+A
Sbjct: 300 VNLYIKNLDDSIGDDKLKELFSEFG--TITSCKVMRDPSGISRGSGFVAFSTSEEASRAL 357
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
++NG + K L V A + +E + +AQ
Sbjct: 358 TEMNGKMVVSKPLYVALAQR--KEERRARLQAQ 388
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+ +K D + +TL +F YG S G+ R FV F N A A +
Sbjct: 6 FTNVYVKDFGDELNDETLKEMFEKYGTITSHRVMIKDGKGRGFGFVAFENPESAEHAVQE 65
Query: 77 LNGLRF-LGKVLSVERASKPNE 97
LNG GK+L V RA K NE
Sbjct: 66 LNGKELGEGKILYVGRAQKKNE 87
>gi|432936678|ref|XP_004082225.1| PREDICTED: ELAV-like protein 1-like [Oryzias latipes]
Length = 342
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP ++ QD L +FS G A +R AG FV++ N A +A L
Sbjct: 38 LIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPSDAERAISTL 97
Query: 78 NGLRFLGKVLSVERA 92
NGLR K + V A
Sbjct: 98 NGLRLQSKTIKVSYA 112
>gi|281348278|gb|EFB23862.1| hypothetical protein PANDA_019892 [Ailuropoda melanoleuca]
Length = 411
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 308 VLYLKNLSPGVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIARQALYL 367
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 368 VNGYKLRGKILVIE 381
>gi|322711864|gb|EFZ03437.1| RNA recognition motif containing protein [Metarhizium anisopliae
ARSEF 23]
Length = 731
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 13 KQETENLVTLLIKHLPDAIP-QDTLSRIFSHYGAS--SVRPCSAGRLRNCVFVDFGNEPL 69
++E++ L++++LP +I + LS +F YG S P S G+LR FV +
Sbjct: 139 REESQRPPKLIVRNLPWSIKTSEQLSNLFRSYGKVKFSDLPQSKGKLRGFGFVTIRGKKN 198
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
A +A +NG G+ L+V+ A K + EA+
Sbjct: 199 AEKALEGVNGKEIDGRTLAVDWAVDKETWEKQQDLEAE 236
>gi|428309319|ref|YP_007120296.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428250931|gb|AFZ16890.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 101
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSV----RPCSAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + ++ + +F+ YG + + GR R FV+ G + + A
Sbjct: 1 MSIYVGNLSYDVTEEDIREVFAEYGTVNNVTLPKDRETGRKRGFAFVEMGTDEEETAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
L+G ++G+ L V +A KP E+NK
Sbjct: 61 ALDGAEWMGRNLKVNKA-KPREDNK 84
>gi|157821519|ref|NP_001102890.1| RNA binding motif protein 41 [Rattus norvegicus]
gi|149022081|gb|EDL78975.1| rCG26849, isoform CRA_a [Rattus norvegicus]
Length = 413
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHY----GASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + G GR+R F+ F N+ +A QA Q
Sbjct: 310 VLYLKNLSPRVKERDLISLFARFQEKKGPLIQFQMMTGRMRGQAFITFPNKDIAWQALHQ 369
Query: 77 LNGLRFLGKVLSVERA 92
+NG + GK+L +E A
Sbjct: 370 INGYKLYGKILVIEFA 385
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
+E + +K+ D I + L+++FS YG + SV+ + G+ + FV + A
Sbjct: 192 RERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAA 251
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A ++L+G GKVL V RA K E
Sbjct: 252 QKAVLELHGKSIDGKVLCVGRAQKKIE 278
>gi|67525063|ref|XP_660593.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
gi|40744384|gb|EAA63560.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
Length = 118
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ L I L D L FS YG A V+ R R FV F +EP A A
Sbjct: 1 MAKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAM 60
Query: 75 MQLNGLRFLGKVLSVERASK 94
+N F G+++ V++AS+
Sbjct: 61 GAMNNQEFDGRIIRVDKASE 80
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++ + D +F YG AS G+ R FV++ N A +A
Sbjct: 240 NFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKA 299
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN F G+ L V RA K + EE K +EA
Sbjct: 300 VDELNDSDFHGQKLYVGRAQKKHEREEELRKQYEA 334
>gi|443311045|ref|ZP_21040680.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
gi|442778894|gb|ELR89152.1| RRM domain-containing RNA-binding protein [Synechocystis sp. PCC
7509]
Length = 102
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + QD L ++F+ YG + GR R FV+ G E + A
Sbjct: 1 MSIYVGNLSYEVGQDDLKQVFAEYGTVNRVQVPTDRETGRARGFAFVEMGTEAEETAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 61 ALDGAEWMGRALKVNKA-KPKED 82
>gi|270009870|gb|EFA06318.1| hypothetical protein TcasGA2_TC009189 [Tribolium castaneum]
Length = 369
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
+ +E + + LP+ + D L +F+ YGA + C C F+ + LA +A
Sbjct: 14 RRSETTTKVFVGSLPNGVTTDDLRSLFAPYGA--IAECDIAN--RCGFLHLEDHDLAMKA 69
Query: 74 QMQLNGLRFLGKVLSVERA 92
+LNG F+G +SVE+
Sbjct: 70 IAELNGTNFMGGRISVEKG 88
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-----AGRLRNCVFVDFGNEPLASQAQ 74
V L IK+L D+I D L +FS +G ++ C +G R FV F AS+A
Sbjct: 300 VNLYIKNLDDSIGDDKLKELFSEFG--TITSCKVMRDPSGISRGSGFVAFSTSEEASRAL 357
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
++NG + K L V A + +E + +AQ
Sbjct: 358 TEMNGKMVVSKPLYVALAQR--KEERRARLQAQ 388
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + + L IFS +G A+SVR + +G R FV F N A +A
Sbjct: 190 FTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVD 249
Query: 76 QLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
++NG G+++ V RA K E + FE MK+ TR Q
Sbjct: 250 EMNGKELNGRIMFVGRAQKKMERQMELKRRFE-----QMKQDRTTRYQ 292
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G+ S+ GR + FV
Sbjct: 280 FEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQ 74
+ L +K+L D+I D L +FS +G ++ C R N + FV F AS+A
Sbjct: 314 LNLYVKNLDDSIADDKLRELFSEFG--TITSCKVMRDPNGISRGSGFVAFSTAEEASRAL 371
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
+NG K L V A + +E++ +AQ S M+ AA+
Sbjct: 372 ADMNGKMVASKPLYVALAQR--KEDRRARLQAQ-FSQMRPAAM 411
>gi|452981093|gb|EME80853.1| hypothetical protein MYCFIDRAFT_124169, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 488
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQA 73
E T+ +K+LP + D L+ +FS G + ++ GR R V F E A A
Sbjct: 388 EQSATIHVKNLPWSTSNDDLNELFSTIGEVVRAEIQYEPNGRSRGSGVVQFAAEEHAGTA 447
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKE 114
+ G + G+ L ++ A PN+ N +A+ SM+E
Sbjct: 448 IEKFQGYSYGGRPLGLDFAKYPNDSNA---MDAEPSGSMQE 485
>gi|156836482|ref|XP_001642301.1| hypothetical protein Kpol_224p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156112796|gb|EDO14443.1| hypothetical protein Kpol_224p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 217
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ +K+L ++ LS++F +G+ S + S G LR C +V F + A +A L
Sbjct: 114 IFVKNLDSSVDVAYLSKLFKKFGSLARESEIFHLSNGELR-CAYVYFKDYEKADEAIKSL 172
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFE 105
+G K +++E A K N + K K+ E
Sbjct: 173 DGQLVTNKRINIEYAFKENGDKKAKYGE 200
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L + + D L +FS YG S V GR R FV+F N A +A L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 79 GLRFLGKVLSVERASKPNE 97
GL+ K L V +A K +E
Sbjct: 264 GLQLGSKKLFVGKALKKDE 282
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L +K+L +++ + L IF YG ++ V GR + FV F N + QA+ LN
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 79 GLRFLGKVLSVERASKPNEENK--HKHFEAQ 107
G GK + V A + + K ++F+AQ
Sbjct: 366 GFLVDGKPIVVRVAERKEDRIKRLQQYFQAQ 396
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + +D ++F YG +SS+ G+ R FV+F A +A
Sbjct: 238 NFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAV 297
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN F G+ L V RA K + EE K +EA
Sbjct: 298 DELNNKDFHGQDLYVGRAQKKHEREEELRKSYEA 331
>gi|403289583|ref|XP_003935931.1| PREDICTED: RNA-binding protein 41 [Saimiri boliviensis boliviensis]
Length = 438
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F NE +A QA
Sbjct: 334 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNEEIAWQALHL 393
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 394 VNGYKLHGKILVIE 407
>gi|254578778|ref|XP_002495375.1| ZYRO0B09790p [Zygosaccharomyces rouxii]
gi|238938265|emb|CAR26442.1| ZYRO0B09790p [Zygosaccharomyces rouxii]
Length = 198
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 1 MATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRL 56
++ P QN + E + + LP + LS+ FS +G A R G
Sbjct: 50 LSKKPAQKQQQNSSQDEYSGIVFVSRLPHGFQEKELSKYFSQFGDLKDARLARNKKTGNT 109
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE---RASKPNEENKHKH 103
R+ F++F N+ A AQ +N +G ++ V + SK + K++H
Sbjct: 110 RHYGFIEFVNKDDAKVAQETMNNYLLMGHLIQVRLLPKGSKIEKLYKYRH 159
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
KQE EN+ + +K+L ++ +D L IF +G + V G+ R FV+
Sbjct: 205 KQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVN 264
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
F N A++A LNG +F K V RA K +E + + + ++KEAA +NQ
Sbjct: 265 FENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSE--REMELKEKFEKNIKEAA-DKNQ 319
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
KQE EN+ + +K+L ++ +D L +F ++G + V G+ R FV+
Sbjct: 208 KQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVN 267
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F N A A LNG +F K L V RA K +E
Sbjct: 268 FENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSE 301
>gi|335306381|ref|XP_003135343.2| PREDICTED: RNA-binding protein 41 [Sus scrofa]
Length = 412
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTEKDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALRL 369
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSIS 110
+NG + GK+L +E +NK + + Q++S
Sbjct: 370 VNGYKLRGKILVIEFG-----KNKKQRSDLQAVS 398
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
KQE EN+ + +K+L ++ +D L +F ++G + V G+ R FV+
Sbjct: 208 KQERENVFGSPKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVN 267
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F N A A LNG +F K L V RA K +E
Sbjct: 268 FENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSE 301
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + D +F +G +SS+ G+ R FV+F A +A
Sbjct: 238 NFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAV 297
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
LNG F G+ L V RA K + EE K +EA
Sbjct: 298 EDLNGKDFRGQELYVGRAQKKHEREEELRKSYEA 331
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L +K+L D+I D L ++FS +G S+ C R N + FV F AS+A ++
Sbjct: 16 LYMKNLDDSIDDDKLKQLFSQFG--SITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
+NG + K L V A + +E++ +AQ
Sbjct: 74 MNGKMVVSKPLFVALAQR--KEDRRARLQAQ 102
>gi|434398120|ref|YP_007132124.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
gi|428269217|gb|AFZ35158.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
Length = 96
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + Q L+ +F+ YG SV+ GR+R FV+ G E +A
Sbjct: 1 MSIYVGNLDYGVTQADLTDVFAEYG--SVKRVHLPTDRDTGRVRGFAFVEMGTEAEEDKA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
LNG ++ + L V +A KP E+
Sbjct: 59 IDALNGAEWMDRELKVNKA-KPRED 82
>gi|221121672|ref|XP_002156905.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 11 QNKQETENLVT---LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVD 63
Q +QE E L++ +LP QD +S++F+ G S +R + G+ F++
Sbjct: 2 QQQQEDEEFDVKRNLIVNYLPQTFTQDEVSQMFARIGPVSNCKLIRNYTTGQSLGYAFIE 61
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
+ LA A QL+G+ K L V A + E K+ + + S
Sbjct: 62 YPTAQLAEDAINQLDGMTLQDKKLKVSYARPSSTEIKNSNVYVAGLPSW 110
>gi|4850347|dbj|BAA77714.1| RNA-binding protein [Anabaena variabilis]
Length = 103
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +D+L+ +F+ YG SV+ GR+R FV+ G++ + A
Sbjct: 1 MSVYVGNLSYDVTEDSLNPVFAEYG--SVKRVQLPTDRETGRMRGFGFVEMGSDAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|224115306|ref|XP_002316998.1| predicted protein [Populus trichocarpa]
gi|222860063|gb|EEE97610.1| predicted protein [Populus trichocarpa]
Length = 403
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 10 PQNKQ--ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNE 67
PQ Q N T+ + L ++ DTL +FS YG AG+ C FV F N
Sbjct: 257 PQGNQGENDPNNTTIFVGALDPSVTDDTLRAVFSKYGELVHVKIPAGK--RCGFVQFANR 314
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A QA LNG + G+ + + P+ +
Sbjct: 315 TSAEQALSMLNGTQIAGQNIRLSWGRSPSNK 345
>gi|241695301|ref|XP_002413045.1| conserved hypothetical protein [Ixodes scapularis]
gi|215506859|gb|EEC16353.1| conserved hypothetical protein [Ixodes scapularis]
Length = 440
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
TLL++HLP ++ + + +GA S +RP G+LR+ F F + A QA +L
Sbjct: 12 TLLVRHLPSSLTESEKIDLLKFFGADRVSCMRPT--GKLRHTAFATFPTQEAADQALSRL 69
Query: 78 NGLRFLGKVLSVERAS 93
+ LG +L +E S
Sbjct: 70 HQAELLGSLLVMEEFS 85
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + IK++ + D +F +G +SS+ G+ R FV+F AS A
Sbjct: 234 NFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAV 293
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSI 109
+LN F G+ L V RA K + EE K +EA I
Sbjct: 294 EELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARI 330
>gi|322695427|gb|EFY87235.1| RNA recognition motif containing protein [Metarhizium acridum CQMa
102]
Length = 725
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 13 KQETENLVTLLIKHLPDAIP-QDTLSRIFSHYGASSVR--PCSAGRLRNCVFVDFGNEPL 69
++E++ L++++LP +I + LS +F YG P S G+LR FV +
Sbjct: 138 REESQKPPKLIVRNLPWSIKTSEQLSHLFKSYGKVKFADLPQSKGKLRGFGFVTIRGKKN 197
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
A +A +NG G+ L+V+ A K + EA+
Sbjct: 198 AEKALEGVNGKEIDGRTLAVDWAVDKETWEKQQDLEAE 235
>gi|255563907|ref|XP_002522953.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223537765|gb|EEF39383.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 404
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 4 APFDS--GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVF 61
AP+ S G Q + + N T+ + L ++ + L ++F YG AG+ C F
Sbjct: 249 APYQSTQGTQGENDPNN-TTIFVGALDPSVSDEHLRQVFGKYGELVHVKIPAGK--RCGF 305
Query: 62 VDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
V F N A QA + LNG + G+ + + P+ +
Sbjct: 306 VQFANRACAEQALLGLNGTQLAGQSIRLSWGRSPSNK 342
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + I + L IF+ +G + V GR R FV+F N A +A
Sbjct: 190 FTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVT 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG G+VL V RA K
Sbjct: 250 EMNGKELNGRVLYVGRAQK 268
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-----AGRLRNCVFVDFGNEPLASQAQ 74
V L +K+L D I + L +FS YG ++ C +G R FV F AS+A
Sbjct: 322 VNLYVKNLDDTIDDEKLKELFSEYG--TITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 379
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
++NG + K L V A + +E + +AQ S M+ A+
Sbjct: 380 GEMNGKMIVSKPLYVALAQR--KEERRARLQAQ-FSQMRPVAM 419
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L D+ +D L + F YG + V + G+ + FV+F N A++A LN
Sbjct: 221 IYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALN 280
Query: 79 GLRFLGKVLSVERASKPNE 97
G +F K V +A K +E
Sbjct: 281 GKKFDDKEWYVGKAQKKSE 299
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ L +K+L + QD +FS +GA + ++ G+ + FV+F N A++A
Sbjct: 233 HFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENHEQAAKAV 292
Query: 75 MQLNGLRFLGKVLSVERASKP--NEENKHKHFEAQSISSM 112
L+ F GK L V RA K EE K +E+ + +
Sbjct: 293 DTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKL 332
>gi|158335765|ref|YP_001516937.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|359461305|ref|ZP_09249868.1| RNA-binding protein [Acaryochloris sp. CCMEE 5410]
gi|158306006|gb|ABW27623.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 95
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ I +L + +D LS +F+ YG V+ P +GR R FV+ +E +A
Sbjct: 1 MTVYIGNLSYEVTEDDLSAVFAEYGEVKQVKLPVDRESGRKRGFGFVEMQDESNEEKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKP 95
+L+G ++G+ L V +A KP
Sbjct: 61 ELDGAEWMGRTLKVNKA-KP 79
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS--AGRLRNCVFVD 63
+ G + + + IK+ + + + L IFS YG A S+R + +G+ + FV
Sbjct: 105 ERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVS 164
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
F A +A ++NG GK + V RA K E + FE MK+ +TR Q
Sbjct: 165 FERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFE-----QMKQDRMTRYQ 219
>gi|221104585|ref|XP_002169901.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP QD +S++F+ G S +R + G+ F+++ LA +A QL
Sbjct: 16 LIVNYLPQTFTQDEVSQMFARIGPVSNCKLIRNYTTGQSLGYAFIEYPTAQLAEEAINQL 75
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
+G+ K L V A + E K+ + + S
Sbjct: 76 DGMTLQDKKLKVSYARPSSTEIKNSNVYVAGLPSW 110
>gi|156847793|ref|XP_001646780.1| hypothetical protein Kpol_1023p95 [Vanderwaltozyma polyspora DSM
70294]
gi|238686811|sp|A7TFW4.1|EIF3G_VANPO RecName: Full=Eukaryotic translation initiation factor 3 subunit G;
Short=eIF3g; AltName: Full=Eukaryotic translation
initiation factor 3 RNA-binding subunit; Short=eIF-3
RNA-binding subunit; AltName: Full=Translation
initiation factor eIF3 p33 subunit homolog; Short=eIF3
p33 homolog
gi|156117460|gb|EDO18922.1| hypothetical protein Kpol_1023p95 [Vanderwaltozyma polyspora DSM
70294]
Length = 274
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 2 ATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTL-SRIFSHYG----ASSVRPCSAGRL 56
A P ++ +E +++ TL I L + + TL + +G VR GR
Sbjct: 173 AKDPSSDAYRDSRERDDMATLKITQLNENADETTLREELLFPFGNIPRVVVVRNRETGRS 232
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
R FV F +E +A +A+ LNG F+ +L V+ SKP E+
Sbjct: 233 RGLAFVTFSSEEVAEKARRLLNGRGFMNLILQVD-WSKPKEK 273
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + I + L IF+ +G + V GR R FV+F N A +A
Sbjct: 190 FTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVT 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG G+VL V RA K
Sbjct: 250 EMNGKELNGRVLYVGRAQK 268
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLAS 71
+E+ TL + +L AI + L+ +F+ GA + + C G FV+F + AS
Sbjct: 34 SEDPRTLFVGNLDPAITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQAS 93
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
QA +NG + L + + V A +PN+
Sbjct: 94 QALQSMNGRQLLEREMRVNWAVEPNQ 119
>gi|301788482|ref|XP_002929657.1| PREDICTED: RNA-binding protein 41-like [Ailuropoda melanoleuca]
Length = 484
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 381 VLYLKNLSPGVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIARQALYL 440
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 441 VNGYKLRGKILVIE 454
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 3 TAPFDSGPQNKQETE------NLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSA 53
APF P+ +E E + IK+ D + + L +FS YG + V S+
Sbjct: 169 VAPFK--PRKDREAELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSS 226
Query: 54 GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH-KHFEAQSISSM 112
G+ + FV F + A +A ++NG G+++ V RA K E KH Q M
Sbjct: 227 GKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQ----M 282
Query: 113 KEAAVTRNQ 121
K+ + R Q
Sbjct: 283 KKERIRRCQ 291
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+ +K+ D + +TL +F YG S G+ R FV F N A A +
Sbjct: 182 FTNVYVKNFGDELNDETLKEMFEKYGTITSHRVMIKDGKSRGFGFVAFENPESAEHAVQE 241
Query: 77 LNGLRF-LGKVLSVERASKPNE 97
LNG GK+L V RA K NE
Sbjct: 242 LNGKELGEGKILYVGRAQKKNE 263
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+E+ TL + +L AI + L+ +F+ GA + + C G F++FG+ A QA
Sbjct: 33 SEDPRTLFVGNLDPAITDEFLATLFNQIGAVTKAKVCFDGMNDPFAFIEFGDHNQAGQAL 92
Query: 75 MQLNGLRFLGKVLSVERA--------SKPNEENKHKHFEAQSISS 111
+NG L + + V A S+ E ++H H +SS
Sbjct: 93 QAMNGRSLLDREMRVNWAVDASQPGDSRKQETSRHFHVFVGDLSS 137
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 9 GP-QNKQETENLVT------LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRN 58
GP Q KQ+ E+ ++ + +K+L +A + L IF YGA + V G+ +
Sbjct: 185 GPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKG 244
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
FV+F N A++A LNG F GK V +A K +E
Sbjct: 245 FGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSE 283
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ D +F YG +SS+ G+ R FV++ A +A
Sbjct: 238 NFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAV 297
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 298 DELNGKDFKGQDLYVGRAQKKHEREEELRKSYEA 331
>gi|304365|gb|AAA20897.1| RNA-binding protein [Chlorogloeopsis sp.]
Length = 99
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +D+L+ +F+ YG SV+ GR+R FV+ G + + A
Sbjct: 1 MSVYVGNLSYEVTEDSLNAVFAEYG--SVKRVQLPTDRETGRVRGFGFVEMGTDAEEAAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|411119198|ref|ZP_11391578.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410711061|gb|EKQ68568.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 104
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSV---RPCSAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + +D L FS YG SV + GR+R FV+ +E + A
Sbjct: 1 MSVYVGNLSFKVTEDDLVETFSEYGKVVSVQLPKDRETGRMRGFAFVEMSSETEEAAAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
L+G ++G+ L V +A KP EE +
Sbjct: 61 ALDGAEWMGRDLKVNKA-KPREERR 84
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNE 67
QNK + +K+ D + + L +FS YG + V S G+ + FV F +
Sbjct: 282 QNK--VNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSH 339
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G++L V RA K +E
Sbjct: 340 EAAKKAVEEMNGKDVNGQLLFVGRAQKKSE 369
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPC-SAGRLRNCVFVDFGNEPLASQAQMQL 77
+ L IK+L D I + L R FS +G+ S V+ GR + + F + A++A ++
Sbjct: 392 MKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMREEGRSKGFGLICFSSPEEATKAMAEM 451
Query: 78 NGLRFLG-KVLSVERASKPNEENKHKH 103
NG R LG K L + A +P E H
Sbjct: 452 NG-RILGSKPLYIALAQRPXERKNFLH 477
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L ++ ++ L +IF YG ++ V G+ R F++F N AS A +LN
Sbjct: 215 VFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELN 274
Query: 79 GLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAA 116
G + K V RA K +E + FE S+K+AA
Sbjct: 275 GKKINDKEWYVGRAQKKSEREMELKRRFE----QSLKDAA 310
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+ L +K+L D+I D L +FS++G + V G + FV F ASQA +
Sbjct: 316 LNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTE 375
Query: 77 LNGLRFLGKVLSVERASKPNE 97
+NG GK L V A + +
Sbjct: 376 MNGKMISGKPLYVAFAQRKED 396
>gi|301310455|ref|ZP_07216394.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|423336704|ref|ZP_17314451.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
gi|300832029|gb|EFK62660.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|409240584|gb|EKN33362.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
Length = 123
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ L I +L I + L ++F+ YG A + GR R FV+ ++ LA +A
Sbjct: 1 MNLYISNLSYNISDEDLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+LN + GKV+++ A +P E+
Sbjct: 61 ELNQASYDGKVINITEA-RPRED 82
>gi|225690511|ref|NP_001070120.2| nucleolin [Danio rerio]
Length = 705
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLA 70
+NK+E + TL +K+LP +I QD L IF V + G R +++F E +A
Sbjct: 369 ENKKE-RDARTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTSRGIAYIEFKTEAIA 427
Query: 71 SQAQMQLNGLRFLGKVLSVE 90
+A + G G+ + V+
Sbjct: 428 EKALEEAQGSDVQGRSIIVD 447
>gi|190339446|gb|AAI62643.1| Zgc:152810 protein [Danio rerio]
Length = 708
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLA 70
+NK+E + TL +K+LP +I QD L IF V + G R +++F E +A
Sbjct: 372 ENKKE-RDARTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTSRGIAYIEFKTEAIA 430
Query: 71 SQAQMQLNGLRFLGKVLSVE 90
+A + G G+ + V+
Sbjct: 431 EKALEEAQGSDVQGRSIIVD 450
>gi|115313778|gb|AAI24136.1| Zgc:152810 [Danio rerio]
Length = 704
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLA 70
+NK+E + TL +K+LP +I QD L IF V + G R +++F E +A
Sbjct: 368 ENKKE-RDARTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTSRGIAYIEFKTEAIA 426
Query: 71 SQAQMQLNGLRFLGKVLSVE 90
+A + G G+ + V+
Sbjct: 427 EKALEEAQGSDVQGRSIIVD 446
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ + +K+L A+ Q+ ++F YG ++++ G+ R FV+F A++A
Sbjct: 258 HYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAV 317
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN F G+ L + RA K + EE + +EA
Sbjct: 318 EELNDTEFHGQKLFLGRAQKKSEREEELRRAYEA 351
>gi|428312725|ref|YP_007123702.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428254337|gb|AFZ20296.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 100
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + Q+ LS +F+ YG SV+ GRLR FV+ G E + A
Sbjct: 1 MSIYVGNLSYEVTQEDLSAVFAEYG--SVKRIQLPTDRETGRLRGFAFVEMGTEAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ + V +A KP E+
Sbjct: 59 IEALDGAEWMGRDMKVNKA-KPRED 82
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + + L +FS YG + V S+G+ + FV F N A +A
Sbjct: 160 FTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEAAKKAVK 219
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
++NG G+++ V RA K E
Sbjct: 220 EMNGKDINGQLIFVGRAQKKVE 241
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNE 67
+ + + E + +K+ D + L IFS YG SSV+ + +G+ + F+ F
Sbjct: 190 ERRAKMEQFTNVYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECH 249
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG +F G+ + V RA K E
Sbjct: 250 ADAKRAIEEVNGKQFGGRKIYVSRAQKKKE 279
>gi|428165677|gb|EKX34667.1| hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712]
Length = 219
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEP 68
+ + + TL + +LP I + L +F +G S + +GR R FVD+ NE
Sbjct: 128 RHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQ 187
Query: 69 LASQAQMQLNGLRFLGKVLSV 89
A A LNG+ G+ +SV
Sbjct: 188 SAKDAVSNLNGMPLDGREISV 208
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ D + + L +FS YG + V S G+ + FV F A++A
Sbjct: 87 FTNVYIKNFGDDMDDERLKEMFSKYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVE 146
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
++NG GK++ V RA K E
Sbjct: 147 EMNGKDVNGKMVFVGRAQKKVE 168
>gi|296273514|ref|YP_003656145.1| RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299]
gi|296097688|gb|ADG93638.1| RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299]
Length = 92
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQL 77
+ + ++ ++ L+ +FS YG SSV+ + GR + FV ++ A +A +L
Sbjct: 3 IYVGNMSYGTTEEGLTTLFSQYGEVSSVKLITDRDTGRAKGFGFVAMNDDSAALKAIEEL 62
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHF 104
NG + G+ L + A KP EE + F
Sbjct: 63 NGKEYDGRTLRINEA-KPKEEKPRREF 88
>gi|357618884|gb|EHJ71687.1| hypothetical protein KGM_12879 [Danaus plexippus]
Length = 728
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
S +NK L+I+++ +++L F YG + G+L C FV F
Sbjct: 140 SEDKNKMRVNRNARLIIRNVSFKATEESLKEHFEPYGNILEVKLLKKPDGKLVGCAFVHF 199
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERA 92
N P+A +A + N FLG+ +SV+ A
Sbjct: 200 KNVPMAKKALLNTNMKPFLGRPISVDWA 227
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L+I+++ +++L F+ YG + + G+L C FV F + P+A++A N
Sbjct: 24 LIIRNISFKATEESLREHFAKYGTVEEVKLLKKADGKLVGCAFVHFTHVPMANKAIAATN 83
Query: 79 GLRFLGKVLSVERA 92
FLG+ + V A
Sbjct: 84 KKPFLGRPIYVSWA 97
>gi|71032751|ref|XP_766017.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352974|gb|EAN33734.1| RNA-binding protein, putative [Theileria parva]
Length = 539
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+L I H+P + L R FS +G A S R + FV + N A+QA
Sbjct: 455 SLFIFHIPPQWNNNDLFRTFSPFGRVVQARIAIDRSTNRSKGYAFVSYDNPESATQAVAN 514
Query: 77 LNGLRFLGKVLSVERASKPNEENKH 101
+NG +GK L V + N N +
Sbjct: 515 MNGFTIMGKKLRVNYKTTNNRSNPY 539
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
SGP + L +K+L I + L FS +G + +V S G + FV+F
Sbjct: 182 SGPDTR-----YTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNF 236
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENK--HKHFE 105
N A +A +NGL+ K+L V RA K E + H+ FE
Sbjct: 237 DNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFE 279
>gi|194744937|ref|XP_001954949.1| GF18529 [Drosophila ananassae]
gi|190627986|gb|EDV43510.1| GF18529 [Drosophila ananassae]
Length = 417
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N L+I +LP + + L+ IFS +G +R S G FVDF + A A
Sbjct: 140 NRTNLIINYLPQDMTEMELADIFSKFGHLRRHKIIRDLSTGFSFGYGFVDFMDSRQAQVA 199
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKHKHF 104
Q+ L+G + GK L V A +E+ K+ +
Sbjct: 200 QIILDGRQLRGKRLKVSYARPRSEDIKNSNL 230
>gi|13937775|gb|AAH06986.1| RNA binding motif protein 41 [Homo sapiens]
Length = 413
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLYGKILVIE 383
>gi|378732922|gb|EHY59381.1| hypothetical protein HMPREF1120_07371 [Exophiala dermatitidis
NIH/UT8656]
Length = 534
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGN 66
GPQNK +E V IK++ D + L + YG ++ R +NC FV+F +
Sbjct: 383 GPQNKPASEGTVLAYIKNVNDKVDARVLREVLERYG--ELKYFDVSRPKNCAFVEFAD 438
>gi|443687814|gb|ELT90688.1| hypothetical protein CAPTEDRAFT_200790 [Capitella teleta]
Length = 440
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TL +KHLP + + + H+GA V+ + G +++ FV F + A +A +L+
Sbjct: 6 TLRVKHLPPELSESDQIDLLKHFGAEHVKVMARKGGMKHTAFVLFSDHCSAKKALQRLHQ 65
Query: 80 LRFLGKVLSVE 90
L+ +G +L E
Sbjct: 66 LKVMGSILVAE 76
>gi|78779883|ref|YP_397995.1| RNA-binding region RNP-1 [Prochlorococcus marinus str. MIT 9312]
gi|78713382|gb|ABB50559.1| RNA-binding region RNP-1 [Prochlorococcus marinus str. MIT 9312]
Length = 100
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+T+ I +L + L ++FS+YG V+ C GR R F+D N+ +A
Sbjct: 1 MTIFIGNLSWETEVEDLEQLFSNYGV--VKKCYLPLDRETGRKRGFAFLDLNNQNSEKKA 58
Query: 74 QMQLNGLRFLGKVLSVERASK---PNEENKHKHF 104
L + ++G+ + V A K PN + ++K +
Sbjct: 59 IDDLQDVEWMGREIRVNEAEKRKGPNNKKRNKSY 92
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L IK+L I + L FS +G + ++ G + FV++ N A +A +N
Sbjct: 193 LYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAMN 252
Query: 79 GLRFLGKVLSVERASKPNEENK--HKHFE 105
GL+F K L V RA K E + H+ FE
Sbjct: 253 GLQFGSKYLYVARAQKKAEREQILHRQFE 281
>gi|320167652|gb|EFW44551.1| mki67 interacting nucleolar phosphoprotein [Capsaspora owczarzaki
ATCC 30864]
Length = 173
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVD 63
+ + K +TE V L + H+P ++ + R FS +G R GR R FV+
Sbjct: 7 AASKTKTKTERGV-LYVGHIPYGFYEEQMRRFFSQFGNVYRLRMSRNKKTGRSRGFAFVE 65
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPN 96
FG+ +A +N G++L + K +
Sbjct: 66 FGDRVVAQTVAETMNNYLIFGRLLQCQLLDKKD 98
>gi|193624932|ref|XP_001949363.1| PREDICTED: probable RNA-binding protein 19-like [Acyrthosiphon
pisum]
Length = 831
Score = 39.7 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L++K+LP AI D L IFS G + ++ AG+ R+ FV F NE A A +
Sbjct: 4 LIVKNLPKAITDDKLREIFSEKGVITDVQLKYTKAGKFRHFAFVGFQNEEEAKAALDYFD 63
Query: 79 GLRFLGKVLSVERASKPNEENKHK---HFEAQSISSMKEAAVTRNQ 121
+ VE+ ++ ++NK + + S + KE + +++
Sbjct: 64 NTFLHSLRIKVEKCTELGDDNKPRSWSKYAPDSTAYKKEHSTPKSE 109
>gi|18858877|ref|NP_570984.1| ELAV-like protein 1 [Danio rerio]
gi|6694225|gb|AAF25188.1|AF184245_1 ribonucleoprotein [Danio rerio]
Length = 322
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFG 65
P + ++ L+I +LP + Q+ L +FS G A +R AG FV++
Sbjct: 8 PMGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGHSLGYGFVNYV 67
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERA 92
N A +A LNGLR K + V A
Sbjct: 68 NPSDAERAINTLNGLRLQSKTIKVSYA 94
>gi|348510833|ref|XP_003442949.1| PREDICTED: ELAV-like protein 1-like [Oreochromis niloticus]
Length = 341
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVD 63
G + K NL+ + +LP + QD L +FS G A +R AG FV+
Sbjct: 26 GGDEGKDAKTNLI---VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 82
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERA 92
+ N A +A LNGLR K + V A
Sbjct: 83 YLNPSDAERAISTLNGLRLQSKTIKVSYA 111
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+ L +K+L D+I D L +FS++G + V G + FV F ASQA +
Sbjct: 328 LNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTE 387
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEA 115
+NG GK L V A + +E++ +AQ S M+ A
Sbjct: 388 MNGKMISGKPLYVAFAQR--KEDRKAMLQAQ-FSQMRPA 423
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L ++ ++ L ++F YG ++ V G+ R F++F N AS+A +LN
Sbjct: 227 VFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELN 286
Query: 79 GLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAA 116
G + K V RA K +E + FE S+K+AA
Sbjct: 287 GKKINDKEWYVGRAQKKSEREMELKRRFE----QSLKDAA 322
>gi|301508553|gb|ADK78238.1| ELAV2 [Schmidtea mediterranea]
Length = 411
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQ 72
+N L++ +LP + Q+ + +FS G VR + G FV + N P A +
Sbjct: 50 DNKTNLIVNYLPPNMTQEEVRALFSSIGVVESCKLVRDKTTGESLGYSFVKYLNYPDAEK 109
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEE 98
A LNGLR K + V A +P+ E
Sbjct: 110 AIRTLNGLRLQNKTIKVSLA-RPSSE 134
>gi|167765441|ref|ZP_02437554.1| hypothetical protein BACSTE_03831 [Bacteroides stercoris ATCC
43183]
gi|218128444|ref|ZP_03457248.1| hypothetical protein BACEGG_00012 [Bacteroides eggerthii DSM
20697]
gi|317475729|ref|ZP_07934988.1| RNA recognition domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
gi|167697069|gb|EDS13648.1| hypothetical protein BACSTE_03831 [Bacteroides stercoris ATCC
43183]
gi|217989335|gb|EEC55648.1| hypothetical protein BACEGG_00012 [Bacteroides eggerthii DSM
20697]
gi|316908112|gb|EFV29807.1| RNA recognition domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
Length = 82
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC---SAGRLRNCVFVDFGNEPLASQAQM 75
+ + + +L + +D L ++ YG SSV+ + GR R FV+ + A++A
Sbjct: 1 MNIYVGNLNYRVKEDDLQKVMEDYGTVSSVKFIMDRATGRFRGIAFVEMEDSAAAAKAIS 60
Query: 76 QLNGLRFLGKVLSVERASKP 95
+L+G F G+ + V+ A P
Sbjct: 61 ELDGAEFFGRQMVVKEARPP 80
>gi|53749734|ref|NP_001005461.1| ELAV-like protein 1 [Xenopus (Silurana) tropicalis]
gi|82236379|sp|Q6GLB5.1|ELAV1_XENTR RecName: Full=ELAV-like protein 1; AltName: Full=Protein ElrA
gi|49250885|gb|AAH74585.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
[Xenopus (Silurana) tropicalis]
Length = 326
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ N A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSVA-RPSSE 101
>gi|291514454|emb|CBK63664.1| RNA-binding proteins (RRM domain) [Alistipes shahii WAL 8301]
Length = 116
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + + HL + L +F +G A+ + GR R FV+ NE +A
Sbjct: 1 MNIYVSHLSWGTSSEGLGNLFMQFGEVASANVITDRETGRSRGFGFVEMPNEEEGQKAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
QLNG F G+ ++V A +P EE
Sbjct: 61 QLNGTSFEGQTITVNVA-RPREE 82
>gi|443724444|gb|ELU12456.1| hypothetical protein CAPTEDRAFT_172701 [Capitella teleta]
Length = 359
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP ++ QD + +FS G +R + G+ FV++ + AS+A L
Sbjct: 30 LIVNYLPQSMTQDDIRSLFSSIGEVESCKLIRDKATGQSLGYGFVNYKRQEDASKAITSL 89
Query: 78 NGLRFLGKVLSVERASKPNEEN 99
NGLR K + V A +P+ E+
Sbjct: 90 NGLRLQNKTIKVSVA-RPSSES 110
>gi|344286338|ref|XP_003414916.1| PREDICTED: RNA-binding protein 41 [Loxodonta africana]
Length = 413
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R FV F N+ +A QA
Sbjct: 310 VLYLKNLSPQVTEKDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFVTFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLHGKILVIE 383
>gi|608537|gb|AAA96942.1| ribonucleoprotein [Xenopus laevis]
Length = 326
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ N A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSFA-RPSSE 101
>gi|428304645|ref|YP_007141470.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428246180|gb|AFZ11960.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 103
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVR-PCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + QD LS+ F+ YG SV+ P GR+R FV+ ++ + A
Sbjct: 1 MSVYVGNLSFDVTQDDLSQAFAEYGTVKSVQLPTDRETGRMRGFGFVEMSSDAEETAAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
L+G ++G+ L V +A KP E+ +
Sbjct: 61 ALDGAEWMGRDLKVNKA-KPREDRR 84
>gi|400602999|gb|EJP70597.1| cutinase negative acting protein [Beauveria bassiana ARSEF 2860]
Length = 448
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVF 61
D P+ + + +TL L + + L F +G A V + GR R +
Sbjct: 189 IDEAPKKAKSDDAPMTLFAGSLSWGVDDNALYEAFKSFGNIVSARVVTDKNTGRSRGFGY 248
Query: 62 VDFGNEPLASQAQMQLNGLRFLGKVLSVERA-SKPNE 97
VDFG+ A++A + G G+ L+++ A +KP E
Sbjct: 249 VDFGDSESATKAYEAMQGQEIDGRALNLDYANAKPTE 285
>gi|209523059|ref|ZP_03271616.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|376001688|ref|ZP_09779547.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|423062488|ref|ZP_17051278.1| putative RNA-binding region protein [Arthrospira platensis C1]
gi|209496646|gb|EDZ96944.1| RNP-1 like RNA-binding protein [Arthrospira maxima CS-328]
gi|375329917|emb|CCE15300.1| Glycine-rich RNA-binding protein, rbp-like [Arthrospira sp. PCC
8005]
gi|406716396|gb|EKD11547.1| putative RNA-binding region protein [Arthrospira platensis C1]
Length = 174
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
V L + +LP + + L +F+ G A + G+ R FV ++ LA Q
Sbjct: 3 VRLYVGNLPKELDRKELQAVFAEEGDTISAKVITDRKTGKCRGFGFVTVQSDDLADQIVE 62
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
+ NG F L +ERA +P ++NK + E +S S EA T
Sbjct: 63 KYNGFMFGENALKIERA-QPRKKNKPESEEGRS-SDGGEATAT 103
>gi|354605413|ref|ZP_09023401.1| hypothetical protein HMPREF9450_02316 [Alistipes indistinctus YIT
12060]
gi|353346955|gb|EHB91233.1| hypothetical protein HMPREF9450_02316 [Alistipes indistinctus YIT
12060]
Length = 109
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I +L A D+L +F+ YG A+ + GR R FV+ N+ QA
Sbjct: 1 MNIYISNLNFATKNDSLQNLFAAYGEVSSANIITDRETGRSRGFGFVEMANDAEGQQAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
LN F GKV+ V A +P E
Sbjct: 61 ALNDTEFEGKVIGVNVA-RPKTE 82
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQ 74
+ L +K+L D+I D L +FS +G ++ C R N V FV + AS+A
Sbjct: 311 LNLYVKNLDDSITDDKLKELFSEFG--TITSCKVMRDPNGVSKGSGFVAYSTAEEASKAL 368
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEA 115
++NG + K L V A + +E + +AQ S M+ A
Sbjct: 369 TEMNGKMIVSKPLYVALAQR--KEERRARLQAQ-FSQMRPA 406
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L + ++ L +IF YGA + V G+ R FV+F N A+++ LN
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALN 269
Query: 79 GLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
G F K V +A K +E + + Q ++KE
Sbjct: 270 GKTFDEKEWYVGKAQKKSE--REVELKGQFEQTLKETV 305
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPL 69
ET+ TL + L I + L R F H G A + S G+ R +VDF N+
Sbjct: 169 DETDEPATLFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDS 228
Query: 70 ASQAQMQLNGLRFLGKVLSVE------RASKPNEENKH 101
A +A +++ G G+ ++++ ASK N+ K
Sbjct: 229 AEKALVEMQGKEIDGRPINLDMSTGKPHASKSNDRAKQ 266
>gi|330802792|ref|XP_003289397.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
gi|325080515|gb|EGC34067.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
Length = 628
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQA 73
N L + HLP I L ++FS YG SVR + G + FV F N A +
Sbjct: 509 NDTNLFVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKC 568
Query: 74 QMQLNGLRFLGKVLSVE 90
Q ++NG R K L V+
Sbjct: 569 QKEMNGFRIGSKYLKVK 585
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM-QL 77
+ +KHLP+ + L+++FS YG +S V G FV F N P SQA + +L
Sbjct: 96 IFVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSN-PNESQAAIKEL 154
Query: 78 NGLRFLGKVL 87
+G +F K L
Sbjct: 155 DGFQFQNKKL 164
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ D +F YG ++S+ G+ R FV++ A++A
Sbjct: 235 NFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAV 294
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQ 107
+LN F G+ L V RA K + EE K +EAQ
Sbjct: 295 EELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQ 329
>gi|402911031|ref|XP_003918147.1| PREDICTED: RNA-binding protein 41 [Papio anubis]
Length = 413
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R FV F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFVTFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLRGKILVIE 383
>gi|298707093|emb|CBJ29885.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_a
[Ectocarpus siliculosus]
Length = 289
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSV----RPCSAGRLRNCVFVD 63
+GP N E +VTL + ++P D L RIF YG R G R FV
Sbjct: 18 NGPPN---IEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVR 74
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASK 94
F ++ A A +++G F G+ L ++ A K
Sbjct: 75 FMDQRDADDAIDRMDGEFFAGRELRIQYAKK 105
>gi|148232140|ref|NP_001088628.1| ELAV-like protein 1-B [Xenopus laevis]
gi|82232943|sp|Q5U259.1|ELV1B_XENLA RecName: Full=ELAV-like protein 1-B; AltName: Full=Protein ElrA-B;
Short=ElrA
gi|55250533|gb|AAH86269.1| LOC495680 protein [Xenopus laevis]
Length = 326
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ N A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSFA-RPSSE 101
>gi|452003034|gb|EMD95491.1| hypothetical protein COCHEDRAFT_1200551 [Cochliobolus
heterostrophus C5]
Length = 244
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 21 TLLIKHLPDAIPQDT----LSRIFSHYG-ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
T+ + +L + + DT L R+F +YG V S+ + + F+ F +E A +A
Sbjct: 26 TIYVNNLEERVKIDTMKQALIRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALEAVE 85
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
+NG GKV+ V RA ++E
Sbjct: 86 DMNGFEMYGKVMRVHRAKTHSDET 109
>gi|386780672|ref|NP_001247510.1| RNA-binding protein 41 [Macaca mulatta]
gi|355705049|gb|EHH30974.1| RNA-binding motif protein 41 [Macaca mulatta]
gi|355757597|gb|EHH61122.1| RNA-binding motif protein 41 [Macaca fascicularis]
gi|380814358|gb|AFE79053.1| RNA-binding protein 41 isoform 1 [Macaca mulatta]
gi|383419697|gb|AFH33062.1| RNA-binding protein 41 isoform 1 [Macaca mulatta]
Length = 413
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R FV F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFVTFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLRGKILVIE 383
>gi|365875472|ref|ZP_09415000.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442588736|ref|ZP_21007546.1| RNA-binding protein [Elizabethkingia anophelis R26]
gi|365756731|gb|EHM98642.1| RNA-binding protein [Elizabethkingia anophelis Ag1]
gi|442561494|gb|ELR78719.1| RNA-binding protein [Elizabethkingia anophelis R26]
Length = 93
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I ++ ++ + L +F+ YGA + GR R FV+ N A+ A
Sbjct: 1 MNIFISNINYSVKESQLEELFASYGAIQSAKIIMDRETGRSRGFGFVEMPNNDEANTAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHF 104
LNG F GK L+V A +P EE + F
Sbjct: 61 SLNGALFQGKNLNVSEA-RPKEEKPRRSF 88
>gi|354568572|ref|ZP_08987736.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353540295|gb|EHC09772.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 104
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L ++ Q+ LS +FS YG + GR R FV+ +E + A
Sbjct: 1 MSIYVGNLSYSVSQEELSDVFSEYGTVTRVQLPTDRETGRSRGFGFVEMESEAAETAAIN 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G + G+V+ V +A +P EE
Sbjct: 61 ALDGAEWKGRVMKVNKA-RPREE 82
>gi|410076608|ref|XP_003955886.1| hypothetical protein KAFR_0B04540 [Kazachstania africana CBS 2517]
gi|372462469|emb|CCF56751.1| hypothetical protein KAFR_0B04540 [Kazachstania africana CBS 2517]
Length = 220
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNE 67
N ++ E + + LP+ + LS+ FS +G A R +G R+ FV+F N+
Sbjct: 83 NTKDDEYSSIIYVSRLPNGFHEKELSKYFSQFGDLKEARLARNKKSGNSRHYGFVEFANK 142
Query: 68 PLASQAQMQLNGLRFLGKVLSV 89
A AQ ++ +G +L V
Sbjct: 143 EDAKVAQETMDNYLLMGHLLRV 164
>gi|334118594|ref|ZP_08492683.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333459601|gb|EGK88214.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 95
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ I +L ++ L+ +F+ YG V P GR+R FV+ + A
Sbjct: 1 MTIYIGNLSYRATEEDLTAVFAEYGTVKRVVLPTDRETGRMRGFAFVEMMEDAQEDAAIA 60
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
+L+G ++G+ L V +A KP EE
Sbjct: 61 ELDGAEWMGRPLRVNKA-KPKEEG 83
>gi|302757135|ref|XP_002961991.1| hypothetical protein SELMODRAFT_9008 [Selaginella moellendorffii]
gi|302775356|ref|XP_002971095.1| hypothetical protein SELMODRAFT_9010 [Selaginella moellendorffii]
gi|300161077|gb|EFJ27693.1| hypothetical protein SELMODRAFT_9010 [Selaginella moellendorffii]
gi|300170650|gb|EFJ37251.1| hypothetical protein SELMODRAFT_9008 [Selaginella moellendorffii]
Length = 80
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L + +LP ++L R+FS +G ++ + G + FV F + ASQA +
Sbjct: 6 LYVGYLPATYDDESLKRLFSSFGQIEEVKVIKDRTTGASKGYGFVKFTDPAAASQAVFSM 65
Query: 78 NGLRFLGKVLSVERA 92
NG + K L+V A
Sbjct: 66 NGWKIEDKTLAVRIA 80
>gi|297793411|ref|XP_002864590.1| hypothetical protein ARALYDRAFT_358097 [Arabidopsis lyrata subsp.
lyrata]
gi|297310425|gb|EFH40849.1| hypothetical protein ARALYDRAFT_358097 [Arabidopsis lyrata subsp.
lyrata]
Length = 173
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 27 LPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRF 82
L D D L+ +F+ YG + R G+ + FV + ++ + A LNG +
Sbjct: 44 LYDLTEGDLLA-VFAQYGEVVDVNLARDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAKV 102
Query: 83 LGKVLSVERASK------PNEENKHKHFEAQSI 109
LG+++ VE K +EE KHK EA+ +
Sbjct: 103 LGRIIKVEHCGKYSKREEDDEETKHKKREARGV 135
>gi|427415488|ref|ZP_18905672.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425756163|gb|EKU97020.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 90
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 29 DAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQAQMQLNGLRF 82
DA +D L+ +F+ YG +V+ GR+R FV+ G E + A L+G +
Sbjct: 11 DATNED-LTAVFAEYG--TVKSVHLPTDRETGRMRGFAFVEMGAESEETAAIEALDGAEW 67
Query: 83 LGKVLSVERASKPNEE 98
+G+ L V +A KP EE
Sbjct: 68 MGRDLKVNKA-KPREE 82
>gi|84999108|ref|XP_954275.1| ribonucleoprotein [Theileria annulata]
gi|65305273|emb|CAI73598.1| ribonucleoprotein, putative [Theileria annulata]
Length = 515
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+L I H+P + L R FS +G A S R + FV + N A+QA
Sbjct: 431 SLFIFHIPPQWNNNDLFRTFSPFGRVVQARIAVDRSTNRSKGYAFVSYDNPESATQAVAN 490
Query: 77 LNGLRFLGKVLSVERASKPNEENKH 101
+NG +GK L V + N N +
Sbjct: 491 MNGFTIMGKKLRVNYKTTNNRSNPY 515
>gi|268569444|ref|XP_002640524.1| Hypothetical protein CBG18686 [Caenorhabditis briggsae]
Length = 84
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPC---SAGRLRNCVFVDFGNEPLASQAQMQ 76
++ + ++P + ++ + + FS G ++VR GR R FV+F +E A +A Q
Sbjct: 7 SVYVGNVPYQVSEEEIGQWFSSVGVVNNVRIVFDRETGRPRGFAFVEFTDEAGAQRAVEQ 66
Query: 77 LNGLRFLGKVLSVERASK 94
LNG F G+ L V A+K
Sbjct: 67 LNGASFNGRNLRVNYANK 84
>gi|418747760|ref|ZP_13304055.1| hypothetical protein LEP1GSC178_2276 [Leptospira licerasiae str.
MMD4847]
gi|404276610|gb|EJZ43921.1| hypothetical protein LEP1GSC178_2276 [Leptospira licerasiae str.
MMD4847]
Length = 85
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLR 81
L + +L ++ Q +S +FS+YG + G+ FV+ +E A A+ LNG
Sbjct: 6 LFVGNLNYSVRQQEISDLFSNYGEVAYAKVIEGK--GFGFVEMASEEQAENAKNSLNGTE 63
Query: 82 FLGKVLSVERASKPNEENK 100
F G+ L+++ A KP NK
Sbjct: 64 FKGRTLNIDIA-KPQTFNK 81
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQ 74
+ L +K+L D+I D L +FS +G ++ C R N V FV F AS+A
Sbjct: 311 LNLYVKNLDDSITDDKLKELFSEFG--TITSCKVMRDPNGVSRGSGFVAFSTAEEASRAL 368
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
++NG + K L V A + +E + +AQ
Sbjct: 369 TEMNGKMVVSKPLYVALAQR--KEERRARLQAQ 399
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE E+ + + +K+L + ++ L +IF YG ++ V G+ R FV+
Sbjct: 195 KQERESAIDKATFNNVYVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVN 254
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F N A+Q+ LNG F K V +A K +E
Sbjct: 255 FENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSE 288
>gi|354564693|ref|ZP_08983869.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353549819|gb|EHC19258.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 103
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + QD L ++FS YG SV+ P GR+R FV+ G++ + A
Sbjct: 1 MSIYVGNLSYEVEQDDLKQVFSEYGTVKSVQLPVDRETGRVRGFAFVEMGSDAEEAAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+ ++G+ L V +A +P E
Sbjct: 61 ALDTAEWMGRSLKVNKA-RPKSE 82
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 11 QNKQETEN---LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
Q + T N + +K+L ++ D L F YG ++ V G+ + FV+F
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
N A++A LNG +F K V RA K +E + + ++KEAA
Sbjct: 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSE--RETELRVRYEQNLKEAA 312
>gi|116070776|ref|ZP_01468045.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
gi|116066181|gb|EAU71938.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
Length = 81
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+T+ I +L ++ L +FS YG V CS GR R FVD GN +A
Sbjct: 1 MTIFIGNLSWDAEREDLIHLFSQYG--EVSKCSMPLDRETGRKRGFAFVDLGNADEEKKA 58
Query: 74 QMQLNGLRFLGKVLSVERASKP 95
L + ++G+ +SV R ++P
Sbjct: 59 IDDLQDVEWMGRAISV-RVAEP 79
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 11 QNKQETEN---LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
Q + T N + +K+L ++ D L F YG ++ V G+ + FV+F
Sbjct: 187 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 246
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
N A++A LNG +F K V RA K +E + + ++KEAA
Sbjct: 247 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSE--RETELRVRYEQNLKEAA 296
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCV 60
A F+ K E V L +K+L D I + L ++F +G + V S GR + C
Sbjct: 351 AKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCG 410
Query: 61 FVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
FV F A+ A +++NG K L V A + E
Sbjct: 411 FVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEE 447
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCV-FVDFGNEPLAS 71
+ N + +K+LP + L FS +GA S++ A L C FV+F A
Sbjct: 259 DANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECAR 318
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
A LNG VL V RA K +E
Sbjct: 319 NAVKNLNGKSIGDMVLYVARAQKKSE 344
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L +K+L D+I + L +FS YG ++ C R N V FV F AS+A ++
Sbjct: 318 LYVKNLDDSIADEKLKELFSSYG--TITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLE 375
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
+NG K L V A + +E++ +AQ
Sbjct: 376 MNGKMVASKPLYVTLAQR--KEDRRARLQAQ 404
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-----GRLRNCVFVDFGNEPLASQAQMQ 76
L IKHLPD I D L IF +G + C+ G L+ FV F ++ AS A
Sbjct: 291 LYIKHLPDDITDDRLREIFEPFG--KITSCAIMKEPNGTLKGFAFVCFEDKQHASAALRS 348
Query: 77 LNG 79
LNG
Sbjct: 349 LNG 351
>gi|158333760|ref|YP_001514932.1| RNA-binding domain-containing protein [Acaryochloris marina
MBIC11017]
gi|359463897|ref|ZP_09252460.1| RNA-binding region [Acaryochloris sp. CCMEE 5410]
gi|158304001|gb|ABW25618.1| RNA-binding region [Acaryochloris marina MBIC11017]
Length = 95
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + + L+ +F+ YG S+ P GR+R FV+ ++ ++A
Sbjct: 1 MSIYVGNLSYDVTEQDLNTVFAEYGTVKSAKLPTDRETGRVRGFGFVEMSDDAEETKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
+L+G ++G+ L V +A KP E
Sbjct: 61 ELDGAEWMGRTLKVNKA-KPRE 81
>gi|259486065|tpe|CBF83611.1| TPA: glycine-rich RNA-binding protein, putative (AFU_orthologue;
AFUA_3G08580) [Aspergillus nidulans FGSC A4]
Length = 128
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ L I L D L FS YG A V+ R R FV F +EP A A
Sbjct: 1 MAKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAM 60
Query: 75 MQLNGLRFLGKVLSVERASK 94
+N F G+++ V++AS+
Sbjct: 61 GAMNNQEFDGRIIRVDKASE 80
>gi|449458337|ref|XP_004146904.1| PREDICTED: uncharacterized protein LOC101205455 [Cucumis sativus]
Length = 777
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I +LP D L R+FS +G A ++ +G + FV + + +A+ A +
Sbjct: 483 LYIGYLPPTFDDDGLIRLFSTFGDIVMAKVIKDRVSGLSKGYGFVKYSDIQMANNAIASM 542
Query: 78 NGLRFLGKVLSVERASK 94
NG R G+ ++V A K
Sbjct: 543 NGYRLEGRTIAVRVAGK 559
>gi|449525351|ref|XP_004169681.1| PREDICTED: uncharacterized LOC101205455 [Cucumis sativus]
Length = 778
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I +LP D L R+FS +G A ++ +G + FV + + +A+ A +
Sbjct: 483 LYIGYLPPTFDDDGLIRLFSTFGDIVMAKVIKDRVSGLSKGYGFVKYSDIQMANNAIASM 542
Query: 78 NGLRFLGKVLSVERASK 94
NG R G+ ++V A K
Sbjct: 543 NGYRLEGRTIAVRVAGK 559
>gi|18858613|ref|NP_571527.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Danio rerio]
gi|6694223|gb|AAF25187.1|AF184244_1 ribonucleoprotein [Danio rerio]
Length = 324
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ N A +A L
Sbjct: 20 LIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVNPNDAERAISTL 79
Query: 78 NGLRFLGKVLSVERA 92
NGLR K + V A
Sbjct: 80 NGLRLQSKTIKVSYA 94
>gi|395545742|ref|XP_003774757.1| PREDICTED: RNA-binding protein 41, partial [Sarcophilus harrisii]
Length = 465
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNC 59
A ++ G NK L +K+L + + L +F+ + P GR++
Sbjct: 352 ASYNPGEPNK-------VLYLKNLSPRVTEKELVSLFARFQEKKGPPIQFRVLTGRMKGQ 404
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90
FV F N +A QA + +NG LGK L +E
Sbjct: 405 AFVTFPNMEMAQQALLLVNGYNLLGKTLVIE 435
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 4 APFDSGPQNKQETEN----LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRL 56
PF + + E +N + IK+ D + + L FSHYG + V S+G+
Sbjct: 170 GPFKNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKS 229
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
+ FV F A +A +NG G+ + V RA K E
Sbjct: 230 KGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAE 270
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L ++ D L +F +G ++ V G+ + FV+F N A++A LN
Sbjct: 209 VFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALN 268
Query: 79 GLRFLGKVLSVERASKPNE-ENKHKH-FEAQSISSMKEAA 116
G +F K V +A K +E EN+ K FE SMKEAA
Sbjct: 269 GKKFDDKEWYVGKAQKKSERENELKQRFE----QSMKEAA 304
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-----AGRLRNCVFVDFGNEPLASQAQ 74
+ L IK+L D+I + L +FS YG ++ C +G + FV F N AS+A
Sbjct: 309 LNLYIKNLDDSISDEKLKELFSPYG--TITSCKVMRDPSGVSKGSGFVAFSNPEEASRAL 366
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
++NG + K L V A + +E + +AQ S M+ A+
Sbjct: 367 SEMNGKMVVSKPLYVALAQR--KEERRARLQAQ-FSQMRPIAMA 407
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L ++ ++ L +IF +GA +V G+ R FV+F N A++A
Sbjct: 205 FTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVE 264
Query: 76 QLNGLRFLGKVLSVERASKPNE-ENKHKHFEAQS 108
LNG + K V RA K +E E + KH QS
Sbjct: 265 ALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQS 298
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
KQE EN+ + +K+L ++ +D L +F +G + V G+ R FV+
Sbjct: 208 KQERENVFGSPKFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVN 267
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F N A++A LNG + K L V RA K +E
Sbjct: 268 FENPDDAARAVEDLNGKKLDDKELYVGRAQKKSE 301
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNE 67
QNK + IK+ D + L +FS YG + V S G+ + FV F +
Sbjct: 183 QNK--ANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSH 240
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G++L V RA K E
Sbjct: 241 EAAQKAVEEMNGKDINGQLLFVGRAQKKAE 270
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQ 74
+ L +K+L D+I D L +FS +G ++ C R N + FV F AS+A
Sbjct: 322 LNLYVKNLDDSISDDKLKELFSEFG--TITSCKVMRDPNGISRGSGFVAFSTAEEASKAL 379
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
++NG + K L V A + +E + +AQ
Sbjct: 380 TEMNGKMVVSKPLYVALAQR--KEERRARLQAQ 410
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L + +D L +IF +G +++V + G+ + FV+F + A+++ LN
Sbjct: 221 VYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALN 280
Query: 79 GLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
G +F K V +A K E + + + S+KE A
Sbjct: 281 GKKFDDKEWYVGKAQKKYE--REMELKGKFEQSLKETA 316
>gi|327398778|ref|YP_004339647.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
gi|327181407|gb|AEA33588.1| RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
Length = 86
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
TL + +LP + +D L +F YG S + GR R FV+ ++ A +A
Sbjct: 4 TLYVGNLPYSTTEDELKELFGEYGEVSSTKIITDRETGRSRGFGFVEMSDDD-AQKAIDS 62
Query: 77 LNGLRFLGKVLSVERA 92
LNG+ F G+ L V A
Sbjct: 63 LNGVNFGGRNLKVNEA 78
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
KQE EN+ + +K+L ++ +D L IF +G + V G+ R FV+
Sbjct: 205 KQERENVSGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVN 264
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
F N A++A LNG +F K V RA K +E + + + ++KEAA +NQ
Sbjct: 265 FENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSE--REMELKEKFEKNIKEAA-DKNQ 319
>gi|194228182|ref|XP_001492854.2| PREDICTED: RNA-binding protein 41 [Equus caballus]
Length = 413
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLRGKILVIE 383
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCV 60
A F+ K E V L +K+L D I + L ++F +G + V S GR + C
Sbjct: 328 AKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCG 387
Query: 61 FVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
FV F A+ A +++NG K L V A + E
Sbjct: 388 FVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEE 424
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCV-FVDFGNEPLAS 71
+ N + +K+LP + L FS +GA S++ A L C FV+F A
Sbjct: 236 DANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECAR 295
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
A LNG VL V RA K +E
Sbjct: 296 NAVKNLNGKSIGDMVLYVARAQKKSE 321
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCV 60
A F+ K E V L +K+L D I + L ++F +G + V S GR + C
Sbjct: 56 AKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCG 115
Query: 61 FVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
FV F A+ A +++NG K L V A + E
Sbjct: 116 FVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEE 152
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L I + L +FS +G + V +G R FV+F A +A M
Sbjct: 190 FTNVYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVM 249
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
+NG G++L V RA K E + Q + MK+ + Q
Sbjct: 250 DMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQ 295
>gi|341892788|gb|EGT48723.1| CBN-RBD-1 protein [Caenorhabditis brenneri]
Length = 876
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L++K+LP + L + F YG +S++ G+ R FV F +E A+ A + N
Sbjct: 5 LIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSAANAISKSN 64
Query: 79 GLRFLGKVLSVER------ASKPNEENKH 101
F K L+VE A+KP +K+
Sbjct: 65 QTFFNSKRLTVEECRPFGDANKPRAWSKY 93
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCV 60
A F+ K E V L +K+L D I + L ++F +G + V S GR + C
Sbjct: 327 AKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCG 386
Query: 61 FVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
FV F A+ A +++NG K L V A + E
Sbjct: 387 FVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEE 423
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCV-FVDFGNEPLAS 71
+ N + +K+LP + L FS +GA S++ A L C FV+F A
Sbjct: 235 DANNFTNVYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECAR 294
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
A LNG VL V RA K +E
Sbjct: 295 NAVKNLNGKSIGDMVLYVARAQKKSE 320
>gi|343427495|emb|CBQ71022.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1256
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 1 MATAPFDSGPQNKQET---ENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC--SAG 54
++ A D G + KQ T EN L + P I +D L F +G + VR + G
Sbjct: 961 LSVALSDPG-RRKQRTDAHENGKELFVSGFPRNINEDELKTYFEEFGTVTGVRLLRNNEG 1019
Query: 55 RLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKH 103
LR FVDF A +A +LN ++ GK +SV A EN+ H
Sbjct: 1020 GLRGIGFVDFEQTLDAHRAMKELNSTKWRGKTISVTIA-----ENRGAH 1063
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L + + L + FS+YGA + V +G+ + FV+F + A+ A
Sbjct: 211 FTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVE 270
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
+LNG F KV V RA + E
Sbjct: 271 KLNGTTFNDKVWYVGRAQRKGE 292
>gi|46111259|ref|XP_382687.1| hypothetical protein FG02511.1 [Gibberella zeae PH-1]
Length = 767
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQ-DTLSRIFSHYGASSVR--PCSAGRLRNCVFVDFGNEPL 69
K+E + L+I++LP +I + + L +F YG P + G+L+ FV P
Sbjct: 137 KEEIQRPNKLIIRNLPWSIKKAEQLEHLFRSYGKVKFADLPQTKGKLKGFGFVTLRGRPN 196
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQS 108
A +A +NG G+ L+V+ A + +K + E +
Sbjct: 197 AERALEAINGKEIDGRTLAVDWAVDKDTWDKQQQPEEED 235
>gi|300123677|emb|CBK24949.2| unnamed protein product [Blastocystis hominis]
Length = 325
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80
L + +L + D LS++F +G + + G+ FV+F E A AQ LN
Sbjct: 5 LYVGNLEYGVENDDLSKLFGQFGEITDIAIKDRGQGAVYAFVEFSKEEEADNAQSSLNST 64
Query: 81 RFLGKVLSVE 90
F+G+ + VE
Sbjct: 65 HFMGRDIRVE 74
>gi|17508587|ref|NP_493023.1| Protein R09B3.3 [Caenorhabditis elegans]
gi|3879016|emb|CAB03237.1| Protein R09B3.3 [Caenorhabditis elegans]
Length = 85
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
++ + + P +D L FS G S+VR C GR R FV+F E A +A Q
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 77 LNGLRFLGKVLSVERASKPN 96
NG+ F G+ L V A N
Sbjct: 65 FNGVDFNGRALRVNLAQNRN 84
>gi|75334880|sp|Q9LEB4.1|RBP45_NICPL RecName: Full=Polyadenylate-binding protein RBP45;
Short=Poly(A)-binding protein RBP45; AltName:
Full=RNA-binding protein 45; Short=NplRBP45
gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length = 409
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 11 QNKQETE-----NLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFG 65
QN Q T+ N T+ + L + ++ L ++FS YG AG+ C FV FG
Sbjct: 268 QNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGK--RCGFVQFG 325
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A QA LNG + G+ + + P+ +
Sbjct: 326 TRASAEQALSSLNGTQLGGQSIRLSWGRSPSSK 358
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K+L + + +F YG AS R G+ R FV+F A+ A
Sbjct: 234 NFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAA 293
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSI 109
+LN + G+ L V RA K + EE K EA +
Sbjct: 294 VEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARV 331
>gi|158339703|ref|YP_001520710.1| RNA-binding protein [Acaryochloris marina MBIC11017]
gi|158309944|gb|ABW31560.1| RNA-binding protein [Acaryochloris marina MBIC11017]
Length = 89
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 20 VTLLIKHLP-DAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQ 72
+++ + +L DA QD L+ +F+ YG +V+ GR R FV+ GN+ ++
Sbjct: 1 MSIYVGNLSFDATEQD-LNAVFAEYG--TVKQVKMPTDRETGRKRGFAFVEMGNDAEEAK 57
Query: 73 AQMQLNGLRFLGKVLSVERASKPNE 97
A +L G ++G+ L V +A +P E
Sbjct: 58 AIDELEGAEWMGRTLKVNKA-RPRE 81
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + D L +FS YG + SV+ S+G+ + FV + A
Sbjct: 193 RDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>gi|359688053|ref|ZP_09258054.1| RNA recognition motif-containing protein [Leptospira licerasiae
serovar Varillal str. MMD0835]
gi|418758172|ref|ZP_13314356.1| hypothetical protein LEP1GSC185_3619 [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384114879|gb|EIE01140.1| hypothetical protein LEP1GSC185_3619 [Leptospira licerasiae serovar
Varillal str. VAR 010]
Length = 107
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFG 65
F+ QN++ L + +L ++ Q +S +FS+YG + G+ FV+
Sbjct: 19 FEESMQNRK-------LFVGNLNYSVRQQEISDLFSNYGEVAYAKVIEGK--GFGFVEMA 69
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNEENK 100
+E A A+ LNG F G+ L+++ A KP NK
Sbjct: 70 SEEQAENAKNSLNGTEFKGRTLNIDIA-KPQTFNK 103
>gi|408391758|gb|EKJ71126.1| hypothetical protein FPSE_08632 [Fusarium pseudograminearum CS3096]
Length = 770
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQ-DTLSRIFSHYGASSVR--PCSAGRLRNCVFVDFGNEPL 69
K+E + L+I++LP +I + + L +F YG P + G+L+ FV P
Sbjct: 137 KEEIQRPNKLIIRNLPWSIKKAEQLEHLFRSYGKVKFADLPQTKGKLKGFGFVTLRGRPN 196
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQS 108
A +A +NG G+ L+V+ A + +K + E +
Sbjct: 197 AERALEAINGKEIDGRTLAVDWAVDKDTWDKQQQPEEED 235
>gi|422303993|ref|ZP_16391342.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9806]
gi|425468337|ref|ZP_18847364.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9701]
gi|389790955|emb|CCI13203.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9806]
gi|389885016|emb|CCI34745.1| putative RNA-binding protein rbpB [Microcystis aeruginosa PCC
9701]
Length = 100
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + D L +F+ YG S P G++R FV+ ++ ++A
Sbjct: 1 MTIYVGNLVYDVTTDDLKEVFAEYGTVSRVYLPVDRETGKMRGFGFVEMSSDEEEAKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
L+G ++G+ + V +A +P E+N
Sbjct: 61 TLDGAEWMGRQMKVNKA-RPKEDN 83
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 11 QNKQETEN---LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
Q + T N + +K+L ++ D L F YG ++ V G+ + FV+F
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNF 262
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
N A++A LNG +F K V RA K +E + + ++KEAA
Sbjct: 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSE--RETELRVRYEQNLKEAA 312
>gi|345807874|ref|XP_549173.3| PREDICTED: RNA-binding protein 41 [Canis lupus familiaris]
Length = 413
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRIMTGRMRGQAFITFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLRGKILVIE 383
>gi|410989129|ref|XP_004000817.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 41 [Felis
catus]
Length = 593
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ LA QA
Sbjct: 382 VLYLKNLSPRVTERDLVSLFARFQEXKGPPIQFRMMTGRMRGQAFITFPNKELAQQALHL 441
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 442 VNGYKLRGKILVIE 455
>gi|28279908|gb|AAH44184.1| Elavl1 protein [Danio rerio]
Length = 324
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ N A +A L
Sbjct: 20 LIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTL 79
Query: 78 NGLRFLGKVLSVERA 92
NGLR K + V A
Sbjct: 80 NGLRLQSKTIKVSYA 94
>gi|428214973|ref|YP_007088117.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
gi|428003354|gb|AFY84197.1| RRM domain-containing RNA-binding protein [Oscillatoria acuminata
PCC 6304]
Length = 106
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+++ + +L + Q+ L+ +F+ YG SV+ + GR+R FV+ E + A
Sbjct: 1 MSIYVGNLSYEVTQEDLNAVFAEYG--SVKRVNLPTDRETGRVRGFAFVEMATETEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ + V +A KP E+
Sbjct: 59 IEALDGAEWMGRDMKVNKA-KPRED 82
>gi|427728558|ref|YP_007074795.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427364477|gb|AFY47198.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 94
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + L +F+ YG V P GR+R FV+ + A
Sbjct: 1 MTIYVGNLSYRATEADLRAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDSQEDAAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHF 104
+L+G ++G+ L V +A KP E+N+ +
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPREDNRRGSW 88
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + IK++ P+ F + + S G+LR FV++ A++A
Sbjct: 220 NFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAV 279
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKE 114
+LNG+ F G+ L V RA K E + + +E + M++
Sbjct: 280 EELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEK 321
>gi|22298986|ref|NP_682233.1| RNA binding protein [Thermosynechococcus elongatus BP-1]
gi|22295168|dbj|BAC08995.1| RNA binding protein [Thermosynechococcus elongatus BP-1]
Length = 90
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+TL I +L ++ L +F YGA V P G+ R FV+ +E + A
Sbjct: 1 MTLYIGNLSYEATENDLREVFEKYGAIRRIVLPVDRETGKRRGFAFVELADETQEAVAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
L+G +LG+VL V +A KP +
Sbjct: 61 DLDGATWLGRVLKVNKA-KPKQ 81
>gi|342180346|emb|CCC89823.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 259
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 4 APFDSGPQNK---QETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRL 56
AP P++K E+++ L++++L + + L RIFS YG A+ +R G
Sbjct: 44 APVSRLPESKLIPNESQSHTNLIVRNLAVRVDESALKRIFSAYGEIVSAAVMRNIHTGGS 103
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEEN 99
FV F A A +G G+ LSV+ A + +++
Sbjct: 104 LGTAFVRFAATEHARNALANCHGRVVYGRALSVQWAKRQHDDT 146
>gi|389584444|dbj|GAB67176.1| poly(A)-binding protein [Plasmodium cynomolgi strain B]
Length = 384
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
+S NK++ + T+ + +LP+ L R FSHYG ++++ + G+ R F++
Sbjct: 188 NSNENNKKKIKPGCTIFVFYLPNDWSDKDLKRHFSHYGNILGATIKRETNGKSRGYGFIN 247
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSV 89
F N+ A A +NG K L V
Sbjct: 248 FENQQSAINAVAGMNGFNAGNKYLKV 273
>gi|334118602|ref|ZP_08492691.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333459609|gb|EGK88222.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 103
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + D L+ +F+ YG S GR+R FV+ +E + A
Sbjct: 1 MSIYVGNLSYEVTSDDLNEVFAEYGTVSRVQVPMDRETGRMRGFAFVEMASEAEEAAAIA 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKH 101
L+G ++G+ L V +A KP E+NK
Sbjct: 61 ALDGAEWMGRDLKVNKA-KPREDNKR 85
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
V L IK+L D+I + L +FS +G + V +G R FV F AS+A +
Sbjct: 318 VNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAE 377
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
+NG + K L V A + +E + +AQ S M+ A+
Sbjct: 378 MNGKMVVSKPLYVALAQR--KEERRARLQAQ-FSQMRPVAM 415
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L ++ ++ L IF YG ++ + + G+ + FV+F N A++A LN
Sbjct: 217 VYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLN 276
Query: 79 GLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
G + K V +A K +E + ++Q SMKEA
Sbjct: 277 GKKIDDKEWYVGKAQKKSE--RELELKSQFEQSMKEAV 312
>gi|159163849|pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 87 VNGYKLYGKILVIE 100
>gi|356542092|ref|XP_003539505.1| PREDICTED: uncharacterized protein LOC100800982 isoform 1 [Glycine
max]
gi|356542094|ref|XP_003539506.1| PREDICTED: uncharacterized protein LOC100800982 isoform 2 [Glycine
max]
Length = 780
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEP 68
K+E ++ L I +LP + D L ++F +G A ++ +G + FV + +
Sbjct: 459 KKEIDD-TNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADIT 517
Query: 69 LASQAQMQLNGLRFLGKVLSVERASK 94
+A+ A + +NG R G+ ++V A K
Sbjct: 518 MANNAILAMNGYRLEGRTIAVRVAGK 543
>gi|357463193|ref|XP_003601878.1| Terminal ear1-like 2 protein [Medicago truncatula]
gi|355490926|gb|AES72129.1| Terminal ear1-like 2 protein [Medicago truncatula]
Length = 524
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ +N TL++ +L D + D L ++F +GA + + RN FV+F + A +A
Sbjct: 147 DAQNQGTLVVFNLDDDVSSDQLQQVFGAFGAIKEVRDTPWKKRNQSFVEFFDIRDAEKAL 206
Query: 75 MQLNGLRFLGKVLSVERASKP 95
+LNG GK +++E SKP
Sbjct: 207 KELNGKEINGKPIAIE-FSKP 226
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K+L + + +F YG AS G+ R FV+F A+ A
Sbjct: 234 NFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAA 293
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSI 109
+LN F G+ L V RA K + EE K EA +
Sbjct: 294 VEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARV 331
>gi|237834785|ref|XP_002366690.1| RRM domain-containing protein [Toxoplasma gondii ME49]
gi|211964354|gb|EEA99549.1| RRM domain-containing protein [Toxoplasma gondii ME49]
gi|221503520|gb|EEE29211.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii VEG]
Length = 859
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC------SAGRLRNCVFVDFGNE 67
E E+ L + +L I ++ L + F YG +SV+ R RNC FV F +
Sbjct: 284 EKESSTNLYLGNLSPEITEEFLCQQFGKYGNITSVKIMYPRTEEEKKRNRNCGFVSFESR 343
Query: 68 PLASQAQMQLNGLRFLGKVLSV 89
P A A+ L+G+ F G V+ +
Sbjct: 344 PQAEAAKHNLDGVSFYGMVIRI 365
>gi|401404962|ref|XP_003881931.1| hypothetical protein NCLIV_016900 [Neospora caninum Liverpool]
gi|325116345|emb|CBZ51898.1| hypothetical protein NCLIV_016900 [Neospora caninum Liverpool]
Length = 894
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC------SAGRLRNCVFVDFGNE 67
E E+ L + +L I ++ L + F YG +SV+ R RNC FV F +
Sbjct: 176 EKESSTNLYLGNLSPEITEEFLCQQFGKYGNITSVKIMYPRTEEEKKRNRNCGFVSFESR 235
Query: 68 PLASQAQMQLNGLRFLGKVLSV 89
P A A+ L+G+ F G V+ +
Sbjct: 236 PQAEAAKHNLDGVAFYGMVIRI 257
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L IK+L D+I + L +FS +G ++ C R N + FV F AS+A ++
Sbjct: 309 LYIKNLDDSIGDEKLKELFSPFG--TITSCKVMRDPNGISRGSGFVAFSTPEEASRALLE 366
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
+NG + K L V A + +E++ +AQ S M+ A+
Sbjct: 367 MNGKIVVSKPLYVALAQR--KEDRRARLQAQ-FSQMRPVAM 404
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D I + L ++FS YG + SV+ + G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A ++L+G GKVL V RA K E
Sbjct: 253 QKAVLELHGKSIDGKVLCVGRAQKKIE 279
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNC---VFVDFGNEPLASQA 73
E L +K+L + +D L F+ +G + R C FV+F N A +A
Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRA 257
Query: 74 QMQLNGLRFLGKVLSVERASKP-------NEENKHKHFEAQSISSMKEAAV 117
+NG +F K L V RA K E+ K KH E + I+ + V
Sbjct: 258 AETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYV 308
>gi|346467271|gb|AEO33480.1| hypothetical protein [Amblyomma maculatum]
Length = 247
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFV 62
D PQ K + +V +KH+P ++ + + FS +G + R G R F+
Sbjct: 33 DEKPQPKVQRRGVV--YVKHIPHGFYEEEMKKYFSQFGTVTNLRLSRSGKTGGSRGYAFI 90
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVL 87
+F +E +A ++G F K+L
Sbjct: 91 EFLSEDVAKIVADTMDGYLFFNKIL 115
>gi|443477523|ref|ZP_21067364.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
gi|443017338|gb|ELS31803.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
Length = 111
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSV----RPCSAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + QD L +F YG + GR R FV+ + A
Sbjct: 1 MSIYVGNLSYEVTQDHLKPVFEDYGKVTRVHFPTDRETGRARGFAFVEMSQDAEEDAAIT 60
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
L+G ++G+VL V +A KP E N
Sbjct: 61 ALDGAEWMGRVLKVNKA-KPRENN 83
>gi|256085557|ref|XP_002578985.1| hypothetical protein [Schistosoma mansoni]
gi|353233139|emb|CCD80494.1| hypothetical protein Smp_078240 [Schistosoma mansoni]
Length = 949
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSA--GRLRNCVFVDFGNEPLASQAQMQLN 78
L +++L + + L +F YG SVR + G + +++F N AS+A + N
Sbjct: 778 LFVRNLDKTVKNEDLEMLFKQYGNIVSVRLATYRNGVPKGHAYIEFTNADDASKALVATN 837
Query: 79 GLRFLGKVLSVERASKP 95
GL F K+LSV + P
Sbjct: 838 GLEFRNKILSVSISEPP 854
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ D +F YG ++S+ G++R FV++ A++A
Sbjct: 232 NFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAV 291
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQ 107
+LN + F + L V RA K + EE + +EAQ
Sbjct: 292 DELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQ 326
>gi|387196968|gb|AFJ68786.1| elav-like protein 2, partial [Nannochloropsis gaditana CCMP526]
Length = 358
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP+ I L +F +G A +R +GR FV + + A A +
Sbjct: 118 LIVNYLPNEIDDMGLRELFQDFGQVESARVIREKGSGRSLGYGFVKYKDPQSADSAILTR 177
Query: 78 NGLRFLGKVLSVERASKPNEENKH 101
NG + GK + V A +EE+KH
Sbjct: 178 NGHQVYGKRIKVSVARPASEEHKH 201
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K+L + + +F YG AS G+ R FV+F A+ A
Sbjct: 234 NFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAA 293
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSI 109
+LN F G+ L V RA K + EE K EA +
Sbjct: 294 VEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARV 331
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + ++FS YG ++++ + G+ + FV+F + A++A
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 75 MQLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSISSM 112
+LNG F + L V RA K E E K +E + +
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKL 328
>gi|428320405|ref|YP_007118287.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
gi|428244085|gb|AFZ09871.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
Length = 95
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ I +L ++ L +F+ YG V P GR+R FV+ + A
Sbjct: 1 MTIYIGNLSYRATEEDLKAVFAEYGTVKRVVLPTDRETGRMRGFAFVEMMEDAQEDAAIA 60
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
+L+G ++G+ L V +A KP EE
Sbjct: 61 ELDGAEWMGRPLRVNKA-KPKEEG 83
>gi|282901124|ref|ZP_06309055.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
gi|281193956|gb|EFA68922.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
Length = 99
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD L+ +F+ YG SV+ GR+R FV+ +E + A
Sbjct: 1 MSVYVGNLSYEVTQDALTAVFAEYG--SVKRVQIPTDRETGRVRGFAFVEMNSEAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|156366101|ref|XP_001626979.1| predicted protein [Nematostella vectensis]
gi|156213874|gb|EDO34879.1| predicted protein [Nematostella vectensis]
Length = 335
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L+I ++P ++ Q+ + +IF G + +R + G+ FV++ N A++A ++
Sbjct: 12 LIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREM 71
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSI-SSMKEAAV 117
NG R K L V A + E K+ + + MKE V
Sbjct: 72 NGARLQNKTLKVSFARPSSTEIKNANLYISGLPKDMKEEEV 112
>gi|427701549|ref|YP_007044771.1| RRM domain-containing RNA-binding protein [Cyanobium gracile PCC
6307]
gi|427344717|gb|AFY27430.1| RRM domain-containing RNA-binding protein [Cyanobium gracile PCC
6307]
Length = 96
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+T+ + +L D L+ +F+ YGA +R CS GR R FV+ NE ++A
Sbjct: 1 MTIYVGNLSFDAEVDDLNHLFAQYGA--LRNCSLPLDRETGRKRGFAFVEMANEADETKA 58
Query: 74 QMQLNGLRFLGKVLSVERA 92
L + ++G+++ V +A
Sbjct: 59 IDDLQDVEWMGRMIRVNKA 77
>gi|406965367|gb|EKD91001.1| Glycine-rich RNA-binding protein [uncultured bacterium]
Length = 87
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L + LP + L FS YG A+ ++ GR R FV+F N+ +A ++
Sbjct: 8 LFVGSLPWGVDDSGLREAFSKYGEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQEM 67
Query: 78 NGLRFLGKVLSVERASKPNE 97
NG G+ + V A +P E
Sbjct: 68 NGADMDGRNIVVNEA-RPRE 86
>gi|17230420|ref|NP_486968.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75907197|ref|YP_321493.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|81818505|sp|Q44554.3|RBPB_NOSS1 RecName: Full=Putative RNA-binding protein RbpB
gi|304057|gb|AAA67898.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|801736|dbj|BAA09050.1| RNA-binding protein RbpB [Anabaena variabilis]
gi|17132022|dbj|BAB74627.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75700922|gb|ABA20598.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 103
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +++L+ +F+ YG SV+ GR+R FV+ G++ + A
Sbjct: 1 MSIYVGNLSYDVTEESLNAVFAEYG--SVKRVQLPVDRETGRVRGFGFVEMGSDAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>gi|427708129|ref|YP_007050506.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427360634|gb|AFY43356.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 99
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + L +F+ YG V P GR+R FV+ + + A
Sbjct: 1 MTIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMEEDAQENAAIT 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
+L+G ++G+ L V +A KP E+N+
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPREDNR 84
>gi|166367328|ref|YP_001659601.1| RNA-binding region protein [Microcystis aeruginosa NIES-843]
gi|425440525|ref|ZP_18820825.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC
9717]
gi|166089701|dbj|BAG04409.1| RNA-binding region protein [Microcystis aeruginosa NIES-843]
gi|389719028|emb|CCH97091.1| putative RNA-binding protein rbpF [Microcystis aeruginosa PCC
9717]
Length = 100
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + D L +F+ YG S P G++R FV+ ++ ++A
Sbjct: 1 MTIYVGNLVYDVTTDDLKEVFAEYGTVSRVYLPVDRETGKMRGFGFVEMSSDEEEAKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEEN 99
L+G ++G+ + V +A +P E+N
Sbjct: 61 TLDGAEWMGRQMKVNKA-RPKEDN 83
>gi|221486024|gb|EEE24294.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii GT1]
Length = 865
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC------SAGRLRNCVFVDFGNE 67
E E+ L + +L I ++ L + F YG +SV+ R RNC FV F +
Sbjct: 284 EKESSTNLYLGNLSPEITEEFLCQQFGKYGNITSVKIMYPRTEEEKKRNRNCGFVSFESR 343
Query: 68 PLASQAQMQLNGLRFLGKVLSV 89
P A A+ L+G+ F G V+ +
Sbjct: 344 PQAEAAKHNLDGVSFYGMVIRI 365
>gi|150007582|ref|YP_001302325.1| RNA-binding protein rbpA [Parabacteroides distasonis ATCC 8503]
gi|255013892|ref|ZP_05286018.1| putative RNA-binding protein rbpA [Bacteroides sp. 2_1_7]
gi|298375526|ref|ZP_06985483.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|410101874|ref|ZP_11296802.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
gi|423331931|ref|ZP_17309715.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|149936006|gb|ABR42703.1| putative RNA-binding protein rbpA [Parabacteroides distasonis
ATCC 8503]
gi|298268026|gb|EFI09682.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|409229772|gb|EKN22644.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|409239672|gb|EKN32456.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
Length = 123
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ L I +L I + L +F+ YG A + GR R FV+ ++ LA +A
Sbjct: 1 MNLYISNLSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+LN + GKV+++ A +P E+
Sbjct: 61 ELNQASYDGKVINITEA-RPRED 82
>gi|358423109|ref|XP_616173.4| PREDICTED: RNA-binding protein 41 isoform 1 [Bos taurus]
gi|359081799|ref|XP_002699929.2| PREDICTED: RNA-binding protein 41 [Bos taurus]
Length = 413
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNTEIAWQALRL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLRGKILVIE 383
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVD 63
D + + +T + IK+L D + + L IFS YG + V G+ + FV
Sbjct: 177 DREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKGFGFVS 236
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F N A A ++NG G+ + V RA K E
Sbjct: 237 FYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVE 270
>gi|328876669|gb|EGG25032.1| hypothetical protein DFA_03278 [Dictyostelium fasciculatum]
Length = 1049
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ TL +K+L +PQD + R FSH+G + C + N F+ F + A QA LN
Sbjct: 351 ISTLYVKNLDPNLPQDRVLREFSHFGELEYKECVF--INNYAFIKFQSRNDAEQALSHLN 408
Query: 79 GLRFLGKVLSVERA 92
+ K L ++ +
Sbjct: 409 AKKLGDKELKIKWS 422
>gi|426257763|ref|XP_004022492.1| PREDICTED: RNA-binding protein 41 [Ovis aries]
Length = 413
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNTEIAWQALRL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLRGKILVIE 383
>gi|194746088|ref|XP_001955516.1| GF16214 [Drosophila ananassae]
gi|190628553|gb|EDV44077.1| GF16214 [Drosophila ananassae]
Length = 391
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP + L R+F++YG SV C + C FV N +A A LN
Sbjct: 4 TAKVFVGSLPPGCKPEELRRLFANYG--SVVECDV--MNRCAFVHLANVDMADAAISALN 59
Query: 79 GLRFLGKVLSVERASKP 95
G F G+ + VE A +P
Sbjct: 60 GTNFKGQNIVVE-AGRP 75
>gi|168028585|ref|XP_001766808.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682017|gb|EDQ68439.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 677
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVD 63
SG NK + NL + +LP + + L+R+F+ +GA +R G + FV
Sbjct: 441 SGKFNKDDDANL---YVGYLPSTVDDEGLARLFAPFGAVEHAKVIRDRLTGVTKGYGFVK 497
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERA 92
F + A+ A NG R G+VL+V A
Sbjct: 498 FSDPSSATAAVTHRNGYRLEGRVLAVRVA 526
>gi|283806648|ref|NP_060771.3| RNA-binding protein 41 isoform 1 [Homo sapiens]
gi|117949772|sp|Q96IZ5.2|RBM41_HUMAN RecName: Full=RNA-binding protein 41; AltName: Full=RNA-binding
motif protein 41
gi|119623127|gb|EAX02722.1| hypothetical protein FLJ11016, isoform CRA_a [Homo sapiens]
gi|410223394|gb|JAA08916.1| RNA binding motif protein 41 [Pan troglodytes]
gi|410259212|gb|JAA17572.1| RNA binding motif protein 41 [Pan troglodytes]
gi|410291258|gb|JAA24229.1| RNA binding motif protein 41 [Pan troglodytes]
gi|410337931|gb|JAA37912.1| RNA binding motif protein 41 [Pan troglodytes]
Length = 413
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLHGKILVIE 383
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + IK+L I + S +F +G + S+ + R FV++ N A +A
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSISSM 112
+LN + GK L V RA K + EE K +E + M
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKM 358
>gi|332226063|ref|XP_003262208.1| PREDICTED: RNA-binding protein 41 [Nomascus leucogenys]
Length = 413
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLHGKILVIE 383
>gi|388604324|pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs
Of Human Antigen R
Length = 177
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 64
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 65 NGLRLQSKTIKVSYA-RPSSE 84
>gi|388326834|pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of
Hur Complexed With Rna
gi|388326835|pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of
Hur Complexed With Rna
Length = 177
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 64
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 65 NGLRLQSKTIKVSYA-RPSSE 84
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSH----YGASSVRPCSAGRLRNCVFVDFGN 66
Q +ETE T+ + L +I + L + F H GA + R R +VDF N
Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFEN 218
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA-SKP 95
+ A +A ++ G G+ ++ + + SKP
Sbjct: 219 KSYAEKAIQEMQGKEIDGRPINCDMSTSKP 248
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSH----YGASSVRPCSAGRLRNCVFVDFGN 66
Q +ETE T+ + L +I + L + F H GA + R R +VDF N
Sbjct: 161 QKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFEN 220
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA-SKP 95
+ A +A ++ G G+ ++ + + SKP
Sbjct: 221 KSYAEKAIQEMQGKEIDGRPINCDMSTSKP 250
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSH----YGASSVRPCSAGRLRNCVFVDFGN 66
Q +ETE T+ + L +I + L + F H GA + R R +VDF N
Sbjct: 163 QKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFEN 222
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA-SKP 95
+ A +A ++ G G+ ++ + + SKP
Sbjct: 223 KSYAEKAIQEMQGKEIDGRPINCDMSTSKP 252
>gi|283806598|ref|NP_001164551.1| RNA-binding protein 41 isoform 2 [Homo sapiens]
gi|332861373|ref|XP_521210.3| PREDICTED: RNA-binding protein 41 isoform 4 [Pan troglodytes]
gi|397497857|ref|XP_003819720.1| PREDICTED: RNA-binding protein 41 [Pan paniscus]
gi|426396991|ref|XP_004064712.1| PREDICTED: RNA-binding protein 41 [Gorilla gorilla gorilla]
gi|7023419|dbj|BAA91957.1| unnamed protein product [Homo sapiens]
gi|119623128|gb|EAX02723.1| hypothetical protein FLJ11016, isoform CRA_b [Homo sapiens]
gi|410291256|gb|JAA24228.1| RNA binding motif protein 41 [Pan troglodytes]
Length = 405
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLHGKILVIE 383
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE EN V + +K+L ++ ++ L +IF YG ++ + G+ R F++
Sbjct: 205 KQERENSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFIN 264
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAA 116
F + A++A +LNG + K V RA K +E + FE SMK+AA
Sbjct: 265 FKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFE----QSMKDAA 315
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQ 74
+ L +K+L D+I D L +FS+YG + C R N V FV F P +
Sbjct: 321 LNLYMKNLDDSIGDDQLCELFSNYG--KITSCKIMRDANGVSKGSGFVAFSTLPFIQLTE 378
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
M NG GK L V A + +E++ +AQ
Sbjct: 379 M--NGKMISGKPLYVAFAQR--KEDRKAMLQAQ 407
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 13 KQETENLVT------LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQ+ EN+ + + +K+L D + D L +F YG ++ V S G+ R FV+
Sbjct: 201 KQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVN 260
Query: 64 FGNEPLASQAQMQLN 78
F N A+QA +LN
Sbjct: 261 FENADAAAQAVQELN 275
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+LP + + L +FS +G + V S+GR R FV+F A +A +
Sbjct: 190 FTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVV 249
Query: 76 QLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
+NG G++L RA K E + FE MK+ ++R Q
Sbjct: 250 HMNGKEVSGRLLYASRAQKRVERQNELKRRFE-----QMKQDRLSRYQ 292
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
E + L +++L +DT+ + F + V ++R+ FV F + A QA
Sbjct: 243 ETVKILYVRNLMIETTEDTIKKSFGQFNPGCVE--RVKKIRDYAFVHFASREDAVQAMNN 300
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
LNG G L V A ++E ++ +A + EAAV
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAAV 341
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-----AGRLRNCV 60
F+ Q + + L +K+L D+I D L +FS YG ++ C +G +
Sbjct: 295 FEQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYG--TITSCKVMRDPSGVSKGSG 352
Query: 61 FVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
FV F AS+A ++NG + K L V A + +E + +AQ S M+ A+
Sbjct: 353 FVAFSTPEEASRALSEMNGKMVVSKPLYVALAQR--KEERRARLQAQ-FSQMRPIAM 406
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L ++ ++ L +IF +G + +V G+ R FV+F N A++A
Sbjct: 205 FTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVE 264
Query: 76 QLNGLRFLGKVLSVERASKPNE-ENKHKHFEAQS 108
LNG + K V RA K +E E + KH QS
Sbjct: 265 ALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQS 298
>gi|426330546|ref|XP_004026270.1| PREDICTED: RNA-binding protein 40 [Gorilla gorilla gorilla]
Length = 81
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNE 67
TLL++HLP + + + ++GA SVR S GRL++ F F NE
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNE 75
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC--SAGRLRNCVFVDFGNEPLASQAQM 75
+ +K++ D I + L +F YG SV+ ++G+ + FV + A +A +
Sbjct: 72 FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVL 131
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
L+G GKVL V RA K E
Sbjct: 132 DLHGKSIDGKVLYVGRAQKKIE 153
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSH----YGASSVRPCSAGRLRNCVFVDFGN 66
Q +ETE T+ + L +I + L + F H GA + R R +VDF N
Sbjct: 161 QKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFEN 220
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA-SKP 95
+ A +A ++ G G+ ++ + + SKP
Sbjct: 221 KSYAEKAIQEMQGKEIDGRPINCDMSTSKP 250
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
E + L +++L +DT+ + F + V ++R+ FV F + A QA
Sbjct: 243 ETVKILYVRNLMIETTEDTIKKSFGQFNPGCVE--RVKKIRDYAFVHFASREDAVQAMNN 300
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
LNG G L V A ++E ++ +A + EAAV
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAAV 341
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSH----YGASSVRPCSAGRLRNCVFVDFGN 66
Q +ETE T+ + L +I + L + F H GA + R R +VDF N
Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFEN 218
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA-SKP 95
+ A +A ++ G G+ ++ + + SKP
Sbjct: 219 KSYAEKAIQEMQGKEIDGRPINCDMSTSKP 248
>gi|440906239|gb|ELR56525.1| RNA-binding protein 41, partial [Bos grunniens mutus]
Length = 413
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNTEIAWQALRL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLRGKILVIE 383
>gi|395513446|ref|XP_003760935.1| PREDICTED: ELAV-like protein 1 [Sarcophilus harrisii]
Length = 374
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 70 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 129
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 130 NGLRLQSKTIKVSYA-RPSSE 149
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+ L +K+L D+I + L +FS +G + + G R FV F AS+A +
Sbjct: 315 LNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGE 374
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
+NG + K L V A + +E++ +AQ S M+ A+T
Sbjct: 375 MNGKMIVSKPLYVAVAQR--KEDRRARLQAQ-FSQMRPVAIT 413
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 13 KQETENLVT------LLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSA-GRLRNCVFVD 63
KQ+ +N+++ + +K+L ++ +D L F YG S+V A GR + FV+
Sbjct: 198 KQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVN 257
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
F N A++A LNG + K V +A K +E + + + + ++KE+ V + Q
Sbjct: 258 FENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSE--REQELKGRFEQTVKESVVDKFQ 313
>gi|428306262|ref|YP_007143087.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428247797|gb|AFZ13577.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 111
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + Q+ +S+ F+ YG +V+ GR+R FV+ + +A
Sbjct: 1 MSIYVGNLSYQVTQEDISQTFAEYG--TVKRVQLPTDRETGRMRGFAFVEMETDAEEEKA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP EE
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPREE 82
>gi|225706444|gb|ACO09068.1| ELAV-like protein 1 [Osmerus mordax]
Length = 374
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDF 64
G + K NL+ + +LP ++ QD L +F G A +R AG FV++
Sbjct: 27 GDEGKDAKTNLI---VNYLPQSMTQDELRSLFCSIGEVESAKLIRDKVAGHSLGYGFVNY 83
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERA 92
N A +A LNGLR K + V A
Sbjct: 84 LNPSDAERAISTLNGLRLQSKTIKVSYA 111
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLAS 71
+ + + IK+ D + + L +F YG + V S+G+ R FV F A+
Sbjct: 186 KAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDAN 245
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
+A ++NG GK + V RA K E
Sbjct: 246 KAVEEINGTELNGKTVFVGRAQKKME 271
>gi|282898657|ref|ZP_06306645.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
gi|281196525|gb|EFA71434.1| RNA-binding region protein RNP-1 [Cylindrospermopsis raciborskii
CS-505]
Length = 96
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ I +L + L +F+ YG V P G++R FV+ + A
Sbjct: 1 MTIYIGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGKMRGFAFVEMNEDAQEDAAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKH 103
+L+G ++G+ L V +A KP EEN ++
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPKEENNREN 87
>gi|340914665|gb|EGS18006.1| hypothetical protein CTHT_0060190 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 539
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSH----YGASSVRPCSAGRLRNCVFVDF 64
G N Q +E TL + +L A+ L F + A V + R R +VDF
Sbjct: 294 GDANAQTSEKTATLWVGNLGWAVDDKALYEEFENCEGIVSARVVTDKDSRRSRGFGYVDF 353
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPNEEN 99
+ A +A + NG G+ + ++ ASKP E N
Sbjct: 354 TSPDAAEKAYNEKNGAHLQGREMRLDFASKPAEGN 388
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L IFS +G + V ++GR R FV++GN A +A
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG G+++ V RA K
Sbjct: 250 EMNGKEVNGRMVYVGRAQK 268
>gi|124513886|ref|XP_001350299.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23615716|emb|CAD52708.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 509
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFG 65
PQN + + L I LP I +D + +FS YG ++ S G + C FV F
Sbjct: 174 PQNIESGVDQAKLFIGSLPKNITEDNIKEMFSPYGTVEEVFIMKDNSTGLGKGCSFVKFS 233
Query: 66 NEPLASQAQMQLNGLRFL 83
+ A A LNG + L
Sbjct: 234 YKEQALYAIKSLNGKKTL 251
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I H+P+ Q L + FS +G A + GR R FV + + A+ A Q+
Sbjct: 371 LFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSLESAAAAISQM 430
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQS 108
NG L K L V K EE++ K + Q+
Sbjct: 431 NGFMALNKKLKV--TVKKGEEDEMKKYVNQN 459
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQL 77
V L +K+L + I + L + FS +G +S R + GR + FV F + A++A ++
Sbjct: 295 VNLYVKNLDEQIDDERLRKEFSQFGTITSARVMTEGGRTKGFGFVCFSSPEEATKAVTEM 354
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
NG + K L V A + +E++ H AQ +
Sbjct: 355 NGRIVVAKPLYVALAQR--KEDRKAHLAAQYM 384
>gi|367009880|ref|XP_003679441.1| hypothetical protein TDEL_0B01010 [Torulaspora delbrueckii]
gi|359747099|emb|CCE90230.1| hypothetical protein TDEL_0B01010 [Torulaspora delbrueckii]
Length = 210
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRP----CSAGRLRNCVFVDFGNEPLASQAQ 74
+ + +K+L +I + LSR+F +G + P S G+LR C ++ F N + A
Sbjct: 104 IAKVFVKNLDPSIDEPHLSRLFGKFGPLAKGPEIFYLSDGQLR-CAYIYFKNYDHSDLAL 162
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKHFE 105
LNG + K ++V+ A K N + K+ E
Sbjct: 163 ATLNGQLVVNKKVTVDYAFKENGKGNAKYGE 193
>gi|256839767|ref|ZP_05545276.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738697|gb|EEU52022.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 123
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ L I +L I L ++F+ YG A + GR R FV+ ++ LA +A
Sbjct: 1 MNLYISNLSYNISDADLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+LN + GKV+++ A +P E+
Sbjct: 61 ELNQASYDGKVINITEA-RPRED 82
>gi|432911446|ref|XP_004078683.1| PREDICTED: nucleolin-like [Oryzias latipes]
Length = 455
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVR-PCSAGR-LRNCVFVDFG 65
+ P++K+ E +L +K+LP ++ + + F H A +VR P + R R FV+F
Sbjct: 154 AAPRDKKVKEAR-SLFLKNLPFNAKKEDILKFFKH--AVAVRFPGRSKRPSRGIAFVEFK 210
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERA 92
N +A + + G++F G+VL V RA
Sbjct: 211 NTRIAKRTGDKKQGVKFRGRVLVVARA 237
>gi|296470958|tpg|DAA13073.1| TPA: transformer-2 alpha-like [Bos taurus]
Length = 439
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N +A QA
Sbjct: 336 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNTEIAWQALRL 395
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 396 VNGYKLRGKILVIE 409
>gi|149716413|ref|XP_001497933.1| PREDICTED: ELAV-like protein 1 [Equus caballus]
Length = 326
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAVNTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|209155462|gb|ACI33963.1| ELAV-like protein 1 [Salmo salar]
Length = 342
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLAS 71
T+ L++ +LP ++ QD L +FS G A +R AG FV++ A
Sbjct: 32 TDAKTNLIVNYLPQSMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLTPSDAE 91
Query: 72 QAQMQLNGLRFLGKVLSVERA 92
+A LNGLR K + V A
Sbjct: 92 RAINTLNGLRLQSKTIKVSYA 112
>gi|324531966|gb|ADY49202.1| RNA-binding protein 19, partial [Ascaris suum]
Length = 174
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L++K LP A + L +F YG S++ G+ R FV FG+E A +A LN
Sbjct: 4 LIVKGLPSAYTEAKLRVVFEKYGQLTDCSLKYTKDGKFRRFAFVGFGDEHNAKRALSDLN 63
Query: 79 GLRFLGKVLSVERASKPNEENKHKHFE--AQSISSMKEA 115
+ VE +E K + + A+ S+ K A
Sbjct: 64 NTFINASRIQVEECKPFGDETKPRAWSKYAKDSSAYKRA 102
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+ L IK+L D+I + L +FS +GA + V +G R FV F AS+A +
Sbjct: 294 LNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAE 353
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
+NG + K L V A + +E + +AQ
Sbjct: 354 MNGKMLISKPLYVALAQR--KEERRARLQAQ 382
>gi|348501045|ref|XP_003438081.1| PREDICTED: nucleolin-like [Oreochromis niloticus]
Length = 506
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPL 69
P+ K++ + L +K+LP ++ + +IF A + G + F++F N +
Sbjct: 289 PELKKQARDARCLFVKNLPYNATKEDILKIFHKAIAIRFPGGTEGPTQGIAFLEFKNTGI 348
Query: 70 ASQAQMQLNGLRFLGKVL--------SVERASKPNEENKHKH 103
A + Q Q G+ +VL SV R +K + ENK K
Sbjct: 349 AKKVQKQKQGVTIQKRVLILNRVGEKSVRRVTKADVENKRKK 390
>gi|443476345|ref|ZP_21066256.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
gi|443018689|gb|ELS32896.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
Length = 173
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ L + +LP + + L +IF+ G S + G+ R FV G++ +A
Sbjct: 3 IRLYVGNLPAELDRQALEKIFNESGDSVSLKVITDRKTGKCRGFGFVTVGSDEVADTVIE 62
Query: 76 QLNGLRFLGKVLSVERA 92
+ NG F G VL +E+A
Sbjct: 63 KFNGYDFNGAVLKLEKA 79
>gi|333977917|ref|YP_004515862.1| RNP-1 like RNA-binding protein [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821398|gb|AEG14061.1| RNP-1 like RNA-binding protein [Desulfotomaculum kuznetsovii DSM
6115]
Length = 85
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
TL + +LP A + L FS YG A + GR R FV+ ++ A
Sbjct: 4 TLYVGNLPWATRAEDLEEAFSRYGEIISARVITDRQTGRSRGFGFVEVADKD-ADAIIAA 62
Query: 77 LNGLRFLGKVLSVERASKPNEE 98
LNG F G+V++V A +P EE
Sbjct: 63 LNGTEFNGRVITVNEA-RPREE 83
>gi|242074396|ref|XP_002447134.1| hypothetical protein SORBIDRAFT_06g029180 [Sorghum bicolor]
gi|241938317|gb|EES11462.1| hypothetical protein SORBIDRAFT_06g029180 [Sorghum bicolor]
Length = 440
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 5 PFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDF 64
P G Q++ + N T+ + L + +DTL ++FS YG G + C FV F
Sbjct: 274 PNSQGAQSENDPNN-TTIFVGGLDPNVTEDTLKQVFSPYGEVVHVKIPVG--KRCGFVQF 330
Query: 65 GNEPLASQAQMQLNGLRF--------LGKVLSVERASKPNEENK 100
P A QA + L G G+ LS ++A E N+
Sbjct: 331 VTRPSAEQALLMLQGALIGAQNVRLSWGRSLSNKQAQPQQESNQ 374
>gi|91080945|ref|XP_974350.1| PREDICTED: similar to CG4806 CG4806-PA [Tribolium castaneum]
gi|270005371|gb|EFA01819.1| hypothetical protein TcasGA2_TC007421 [Tribolium castaneum]
Length = 584
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L+I++LP ++ L F+ +G V G+L C FV F A++A+ LN
Sbjct: 38 LVIRNLPFEATEENLKEHFAQFGEVQEVKVLKKEDGKLVGCGFVQFKLVQKAAKARHHLN 97
Query: 79 GLRFLGKVLSVERASKPNE 97
G FLG+ + V+ A N+
Sbjct: 98 GKPFLGREIEVDFALAKNK 116
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L IFS +G + V +GR R FV++GN A +A
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG G+++ V RA K
Sbjct: 250 EMNGKEVNGRMIYVGRAQK 268
>gi|440910206|gb|ELR60031.1| ELAV-like protein 1, partial [Bos grunniens mutus]
Length = 330
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 7 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 66
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 67 NGLRLQSKTIKVSYA-RPSSE 86
>gi|417409800|gb|JAA51391.1| Putative rna-binding protein elav/hu rrm superfamily, partial
[Desmodus rotundus]
Length = 336
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 32 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAVNTL 91
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 92 NGLRLQSKTIKVSYA-RPSSE 111
>gi|293332827|ref|NP_001169335.1| uncharacterized protein LOC100383202 [Zea mays]
gi|224028769|gb|ACN33460.1| unknown [Zea mays]
gi|413918115|gb|AFW58047.1| hypothetical protein ZEAMMB73_457780 [Zea mays]
Length = 714
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
L I +LP + D L +FS +G A ++ + G+ + FV + + A+ A
Sbjct: 420 TNLYIGYLPPTMDDDGLVSLFSQFGDIVMAKVIKDRNTGQSKGYGFVKYSDVSEANAAIA 479
Query: 76 QLNGLRFLGKVLSVERASKP 95
+NG G+V++V A KP
Sbjct: 480 AMNGHHLEGRVIAVRVAGKP 499
>gi|72387121|ref|XP_843985.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175981|gb|AAX70104.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70800517|gb|AAZ10426.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 386
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 4 APFDSGPQNK---QETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRL 56
PF P++K E ++ L++++L + + + L +IFS YG A+ +R G
Sbjct: 28 GPFVKLPESKLTPNECQSKTNLIVRNLSNRVDEAVLKQIFSPYGEILSAAVMRNIHTGDS 87
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94
FV F A A + +G G+VLSV+ A +
Sbjct: 88 LGTAFVRFATTEQARAALVGCHGRVVCGRVLSVQWAKR 125
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L IFS +G + V +GR R FV++GN A +A
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG G+++ V RA K
Sbjct: 250 EMNGKEVNGRMIYVGRAQK 268
>gi|348519072|ref|XP_003447055.1| PREDICTED: hypothetical protein LOC100709068 [Oreochromis
niloticus]
Length = 603
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
V L + +LP + L+++F+ YG + CS LR FV E A +A L+G
Sbjct: 64 VKLFVGNLPIDATHEELNKLFAPYG--EINTCSL--LRQYAFVTLKGEGAADRAIRHLDG 119
Query: 80 LRFLGKVLSVE--RASKPN 96
+ G+ L VE RA PN
Sbjct: 120 KEYRGRPLVVEESRARPPN 138
>gi|411119073|ref|ZP_11391453.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410710936|gb|EKQ68443.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 85
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+T+ + +L D L+ +F+ YGA V+ S G++R FV+ + A
Sbjct: 1 MTIYVGNLSYRATADDLTEVFAEYGA--VKRVSLPMDRETGKMRGFAFVELEEDAHEDTA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENK 100
+L+G ++G+ L V +A KP E +
Sbjct: 59 ISELDGAEWMGRQLKVNKA-KPREATR 84
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQA 73
+ + +++L + + +D L R+FS YG S V GR R FV+F + A +A
Sbjct: 63 QEFTNVYVENLIENVTEDILHRLFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKA 122
Query: 74 QMQLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSIS 110
L G + K L V +A + +E E +HF SI+
Sbjct: 123 VEFLCGRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIA 161
>gi|221057576|ref|XP_002261296.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|194247301|emb|CAQ40701.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 512
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFG 65
PQN + + L I LP +I ++++ +FS YG+ ++ S G + C FV F
Sbjct: 176 PQNIESGVDQAKLFIGSLPKSISEESVKEMFSPYGSVEEVFIMKDNSTGLGKGCSFVKFA 235
Query: 66 NEPLASQAQMQLNGLRFL 83
+ A A LNG + L
Sbjct: 236 YKEQALYAINSLNGKKTL 253
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I H+P+ Q L + FS +G A S GR R FV + N A+ A Q+
Sbjct: 373 LFIFHVPNEWHQTDLIQAFSPFGELLSARIATEKSTGRNRGFAFVSYENIESAAAAISQM 432
Query: 78 NGLRFLGKVLSV 89
NG L K L V
Sbjct: 433 NGFMALNKKLKV 444
>gi|17231514|ref|NP_488062.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75907900|ref|YP_322196.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|81818528|sp|Q44556.3|RBPD_NOSS1 RecName: Full=Putative RNA-binding protein RbpD
gi|1064779|dbj|BAA08403.1| RNA-binding protein [Anabaena variabilis]
gi|17133157|dbj|BAB75721.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75701625|gb|ABA21301.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 94
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + L +F+ YG V P GR+R FV+ + A
Sbjct: 1 MTIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAIT 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHF 104
+L+G ++G+ L V +A KP E+++ +
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPREDDRRGSW 88
>gi|351701320|gb|EHB04239.1| ELAV-like protein 1, partial [Heterocephalus glaber]
Length = 329
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 25 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 84
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 85 NGLRLQSKTIKVSYA-RPSSE 104
>gi|195347400|ref|XP_002040241.1| GM19036 [Drosophila sechellia]
gi|195564435|ref|XP_002105824.1| GD16475 [Drosophila simulans]
gi|194121669|gb|EDW43712.1| GM19036 [Drosophila sechellia]
gi|194203185|gb|EDX16761.1| GD16475 [Drosophila simulans]
Length = 466
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 8 SGPQNKQ--ETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVF 61
SG QN TE L++ +LP + +D + +FS G +R S G+ F
Sbjct: 131 SGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQGQSLGYGF 190
Query: 62 VDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
V++ A QA LNGLR K + V A
Sbjct: 191 VNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 221
>gi|434399674|ref|YP_007133678.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
gi|428270771|gb|AFZ36712.1| RNP-1 like RNA-binding protein [Stanieria cyanosphaera PCC 7437]
Length = 94
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L I Q L +F+ YG +V+ GR R FV+ G E + A
Sbjct: 1 MSIYVGNLDYEISQQDLEEVFTEYG--TVKRVHLPTDRETGRKRGFAFVEMGTEAEEASA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A +P E+
Sbjct: 59 ISALDGAEWMGRSLKVNQA-RPREQ 82
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + D +F +G +SS+ G+ R FV+F A++A
Sbjct: 234 NFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAV 293
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSI 109
+LN G+ L V RA K + EE K +EA I
Sbjct: 294 EELNNKDLHGQELYVGRAQKKHEREEELRKSYEAARI 330
>gi|298492825|ref|YP_003723002.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
gi|298234743|gb|ADI65879.1| RNP-1 like RNA-binding protein ['Nostoc azollae' 0708]
Length = 101
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + +D L + F+ YG S V+ P GRLR FV+ E + A
Sbjct: 1 MSIYVGNLSYQVTEDDLKQAFAEYGKVSRVQLPTDRETGRLRGFAFVEMETEDQETAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
L+G ++G+ L V +A KP E
Sbjct: 61 ALDGAEWMGRDLKVNKA-KPRE 81
>gi|126323791|ref|XP_001366151.1| PREDICTED: ELAV-like protein 1 [Monodelphis domestica]
Length = 326
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|67968717|dbj|BAE00717.1| unnamed protein product [Macaca fascicularis]
Length = 326
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|431905158|gb|ELK10209.1| RNA-binding protein 41 [Pteropus alecto]
Length = 535
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 432 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 491
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
+NG + GK+L +E +NK + Q+ S M A
Sbjct: 492 VNGYKLHGKILVIEFG-----KNKKQQSNLQAASLMSSAT 526
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR R FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSRGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG+ K L V A + E +
Sbjct: 340 FSSPEEATKAVTEMNGIIVATKPLYVSLAHRKEERQAY 377
>gi|73986922|ref|XP_854218.1| PREDICTED: ELAV-like protein 1 isoform 1 [Canis lupus familiaris]
gi|301773126|ref|XP_002921957.1| PREDICTED: ELAV-like protein 1-like isoform 1 [Ailuropoda
melanoleuca]
gi|344299314|ref|XP_003421331.1| PREDICTED: ELAV-like protein 1 [Loxodonta africana]
gi|281349989|gb|EFB25573.1| hypothetical protein PANDA_010904 [Ailuropoda melanoleuca]
Length = 326
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|343959022|dbj|BAK63366.1| ELAV-like protein 1 [Pan troglodytes]
Length = 305
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|38201714|ref|NP_001410.2| ELAV-like protein 1 [Homo sapiens]
gi|114675067|ref|XP_001156643.1| PREDICTED: ELAV-like protein 1 isoform 2 [Pan troglodytes]
gi|395750352|ref|XP_002828622.2| PREDICTED: ELAV-like protein 1 [Pongo abelii]
gi|395841768|ref|XP_003793705.1| PREDICTED: ELAV-like protein 1 [Otolemur garnettii]
gi|402914021|ref|XP_003919435.1| PREDICTED: ELAV-like protein 1 [Papio anubis]
gi|403296075|ref|XP_003938946.1| PREDICTED: ELAV-like protein 1 [Saimiri boliviensis boliviensis]
gi|426386981|ref|XP_004059957.1| PREDICTED: ELAV-like protein 1 isoform 1 [Gorilla gorilla gorilla]
gi|20981691|sp|Q15717.2|ELAV1_HUMAN RecName: Full=ELAV-like protein 1; AltName: Full=Hu-antigen R;
Short=HuR
gi|13097228|gb|AAH03376.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
gi|32879929|gb|AAP88795.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Homo sapiens]
gi|60654991|gb|AAX32059.1| ELAV-like 1 [synthetic construct]
gi|60654993|gb|AAX32060.1| ELAV-like 1 [synthetic construct]
gi|60654995|gb|AAX32061.1| ELAV-like 1 [synthetic construct]
gi|60654997|gb|AAX32062.1| ELAV-like 1 [synthetic construct]
gi|119589355|gb|EAW68949.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Homo sapiens]
gi|157928080|gb|ABW03336.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [synthetic construct]
gi|157928791|gb|ABW03681.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [synthetic construct]
gi|208966198|dbj|BAG73113.1| ELAV-like 1protein [synthetic construct]
gi|355703066|gb|EHH29557.1| hypothetical protein EGK_10021 [Macaca mulatta]
gi|355755385|gb|EHH59132.1| hypothetical protein EGM_09177 [Macaca fascicularis]
gi|380784245|gb|AFE63998.1| ELAV-like protein 1 [Macaca mulatta]
gi|383416395|gb|AFH31411.1| ELAV-like protein 1 [Macaca mulatta]
gi|384945706|gb|AFI36458.1| ELAV-like protein 1 [Macaca mulatta]
gi|410212674|gb|JAA03556.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410265350|gb|JAA20641.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410305890|gb|JAA31545.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
gi|410342973|gb|JAA40433.1| ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Pan
troglodytes]
Length = 326
Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|332264173|ref|XP_003281121.1| PREDICTED: ELAV-like protein 1 [Nomascus leucogenys]
Length = 326
Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|221057546|ref|XP_002261281.1| Polyadenylate binding protein [Plasmodium knowlesi strain H]
gi|194247286|emb|CAQ40686.1| Polyadenylate binding protein, putative [Plasmodium knowlesi strain
H]
Length = 392
Score = 38.1 bits (87), Expect = 0.58, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
S NK++ + T+ + +LP+ L R FSHYG ++++ + G+ R F++F
Sbjct: 197 SNENNKKKIKPGCTIFVFYLPNDWSDKDLKRHFSHYGNILGATIKRETNGKSRGYGFINF 256
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSV 89
N+ A A +NG K L V
Sbjct: 257 ENQQSAINAVAGMNGFNAGNKYLKV 281
>gi|354566345|ref|ZP_08985517.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
gi|353545361|gb|EHC14812.1| RNP-1 like RNA-binding protein [Fischerella sp. JSC-11]
Length = 98
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +D+L+ +F+ YG +V+ GRLR FV+ G E S A
Sbjct: 1 MSIYVGNLSYDVTEDSLNAVFAEYG--TVKRVQLPTDRETGRLRGFGFVEMGTEAEESAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNE 97
L+G ++G+ L V +A KP E
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRE 81
>gi|301773130|ref|XP_002921959.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Ailuropoda
melanoleuca]
Length = 339
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|225461650|ref|XP_002283115.1| PREDICTED: uncharacterized protein LOC100267539 [Vitis vinifera]
Length = 794
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
L I +LP + D L R+FS +G A ++ G + FV + + A+ A
Sbjct: 495 TNLYIGYLPPTLEDDALIRLFSPFGDIVMAKVIKDRVTGLSKGYGFVKYSDVQQANSAIA 554
Query: 76 QLNGLRFLGKVLSVERASK 94
+NG R G+ ++V A K
Sbjct: 555 SMNGYRLEGRTIAVRVAGK 573
>gi|356531689|ref|XP_003534409.1| PREDICTED: uncharacterized protein LOC100818518 [Glycine max]
Length = 780
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEP 68
K+E ++ L I +LP + D L ++F +G A ++ +G + FV + +
Sbjct: 459 KKEIDD-TNLYIGYLPPNLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADIT 517
Query: 69 LASQAQMQLNGLRFLGKVLSVERASK 94
+A+ A + +NG R G+ ++V A K
Sbjct: 518 MANNAILAMNGYRLEGRTIAVRVAGK 543
>gi|1022961|gb|AAB41913.1| HuR RNA binding protein [Homo sapiens]
Length = 326
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|115497832|ref|NP_001069922.1| ELAV-like protein 1 [Bos taurus]
gi|261244966|ref|NP_001159666.1| ELAV-like protein 1 [Ovis aries]
gi|73587279|gb|AAI02496.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Bos taurus]
gi|256665397|gb|ACV04844.1| ELAV-like protein 1 [Ovis aries]
gi|296485836|tpg|DAA27951.1| TPA: ELAV-like 1 (Hu antigen R) [Bos taurus]
Length = 326
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|30524689|emb|CAC85246.1| salt tolerance protein 6 [Beta vulgaris]
Length = 322
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 5 PFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDF 64
P DS P N T+ + +L + + L + FS YG AG+ C FV F
Sbjct: 179 PNDSDPSN-------TTIFVGNLDSNVTDEHLRQTFSPYGELVHVKIPAGK--QCGFVQF 229
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPN 96
N A +A LNG++ G+ + + PN
Sbjct: 230 TNRSSAEEALRVLNGMQLGGRNVRLSWGRSPN 261
>gi|322708692|gb|EFZ00269.1| cutinase negative acting protein [Metarhizium anisopliae ARSEF 23]
Length = 509
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHY----GASSVRPCSAGRLRNCVF 61
D+ P+ K +TE TL +L I + L+ F + GA V GR R +
Sbjct: 247 IDATPK-KAKTEGAPTLFAGNLSWNIDDNALAEAFKEFEGLVGARVVTDRDGGRSRGFGY 305
Query: 62 VDFGNEPLASQAQMQLNGLRFLGKVLSVERA-SKPNEEN 99
VDF A++A + G G+ L+++ A ++P E N
Sbjct: 306 VDFETPEAATKAYEAMQGFELDGRPLNLDYANTRPAESN 344
>gi|167761793|ref|ZP_02433920.1| hypothetical protein BACSTE_00134 [Bacteroides stercoris ATCC
43183]
gi|167700299|gb|EDS16878.1| hypothetical protein BACSTE_00134 [Bacteroides stercoris ATCC
43183]
Length = 99
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I L I L+ +F+ +G A + GR R FV+ N+ +A
Sbjct: 1 MNIYISGLSYGINNADLTNLFAEFGEVSSAKVILDRETGRSRGFAFVEMNNDTEGQKAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+LNG+ + KV+SV A +P EE
Sbjct: 61 ELNGVEYDSKVISVSVA-RPREE 82
>gi|410950299|ref|XP_003981845.1| PREDICTED: ELAV-like protein 1 [Felis catus]
Length = 336
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 32 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 91
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 92 NGLRLQSKTIKVSYA-RPSSE 111
>gi|198449570|ref|XP_002136926.1| GA26866 [Drosophila pseudoobscura pseudoobscura]
gi|198130667|gb|EDY67484.1| GA26866 [Drosophila pseudoobscura pseudoobscura]
Length = 390
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP D L R+FS+YGA A + C FV +A A LN
Sbjct: 3 TAKVFVGSLPSGCKPDELRRLFSNYGAV----VEADVMNRCGFVHLETSDMADAAIAALN 58
Query: 79 GLRFLGKVLSVERASKPNEENKH 101
G F G + VE A +P E +++
Sbjct: 59 GTLFKGVSIVVE-AGRPKERSRN 80
>gi|154339694|ref|XP_001565804.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063122|emb|CAM45321.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 493
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLN 78
T+ I HLP +PQ L + + G + VR C+ AG FV+ A +A M +N
Sbjct: 380 TIYISHLPGLLPQSMLLELLTAAGPVNKVRICTGAGYSTLFAFVEMRTAEGAHRA-MCMN 438
Query: 79 GLRFLGKVLSVERASKPNEE--NKHKHFEA 106
GL+ +G + VE A ++ K F+A
Sbjct: 439 GLQLMGYTIRVETARNAVQDVIEKDAQFDA 468
>gi|345327136|ref|XP_001505507.2| PREDICTED: ELAV-like protein 1-like [Ornithorhynchus anatinus]
Length = 229
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|427710421|ref|YP_007052798.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
gi|427362926|gb|AFY45648.1| RNP-1 like RNA-binding protein [Nostoc sp. PCC 7107]
Length = 102
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + ++ ++ +FS YG +V+ GRLR FV+ G E + A
Sbjct: 1 MSIYVGNLSYDVTENDITGVFSEYG--TVKRVQVPTDRETGRLRGFAFVEMGTEAEEAAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRGLKVNKA-KPKED 82
>gi|78184555|ref|YP_376990.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
gi|78168849|gb|ABB25946.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
Length = 81
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+T+ I +L ++ L +FS YG V CS GR R FVD GN +A
Sbjct: 1 MTIFIGNLSWDAEREDLIHLFSQYG--EVSKCSMPLDRETGRKRGFAFVDLGNAEEEKKA 58
Query: 74 QMQLNGLRFLGKVLSVERASKP 95
L + +G+ +SV R ++P
Sbjct: 59 IDDLQDVELMGRAISV-RVAEP 79
>gi|282896900|ref|ZP_06304906.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
gi|281198309|gb|EFA73199.1| RNA-binding region protein RNP-1 [Raphidiopsis brookii D9]
Length = 92
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ I +L + L +F+ YG V P G++R FV+ + A
Sbjct: 1 MTIYIGNLSYRATEADLKSVFADYGEVKRVVLPTDRETGKMRGFAFVEMIEDAQEDAAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
+L+G ++G+ L V +A KP EEN+
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPKEENR 84
>gi|17228236|ref|NP_484784.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75910838|ref|YP_325134.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
gi|81818536|sp|Q44560.3|RBPA_NOSS1 RecName: Full=Putative RNA-binding protein RbpA
gi|532033|dbj|BAA04563.1| RNA-binding protein [Anabaena variabilis]
gi|17130086|dbj|BAB72698.1| RNA-binding protein [Nostoc sp. PCC 7120]
gi|75704563|gb|ABA24239.1| RNA-binding region RNP-1 [Anabaena variabilis ATCC 29413]
Length = 102
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QDTLS +F+ YG +V+ G+ R FV+ G+E + A
Sbjct: 1 MSIYVGNLSYEVTQDTLSAVFAEYG--TVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>gi|261327112|emb|CBH10088.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 426
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 4 APFDSGPQNK---QETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRL 56
PF P++K E ++ L++++L + + + L +IFS YG A+ +R G
Sbjct: 68 GPFVKLPESKLTPNECQSKTNLIVRNLSNRVDEAVLKQIFSPYGEILSAAVMRNIHTGDS 127
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94
FV F A A + +G G+VLSV+ A +
Sbjct: 128 LGTAFVRFATTEQARAALVGCHGRVVCGRVLSVQWAKR 165
>gi|195159214|ref|XP_002020477.1| GL13491 [Drosophila persimilis]
gi|194117246|gb|EDW39289.1| GL13491 [Drosophila persimilis]
Length = 390
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP D L R+FS+YGA A + C FV +A A LN
Sbjct: 3 TAKVFVGSLPSGCKPDELRRLFSNYGAV----VEADVMNRCGFVHLETSDMADAAIAALN 58
Query: 79 GLRFLGKVLSVERASKPNEENKH 101
G F G + VE A +P E +++
Sbjct: 59 GTLFKGVSIVVE-AGRPKERSRN 80
>gi|124022676|ref|YP_001016983.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9303]
gi|123962962|gb|ABM77718.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9303]
Length = 104
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+T+ I +L Q+ L +FS YG V+ CS GR R FV+ N+ +A
Sbjct: 1 MTIYIGNLSFQAEQEDLLDLFSQYG--EVKTCSLPLDRETGRKRGFAFVEMANDADEQKA 58
Query: 74 QMQLNGLRFLGKVLSVERAS 93
L + ++G+++ V +A+
Sbjct: 59 IDDLQDVEWMGRMIRVNKAT 78
>gi|389584459|dbj|GAB67191.1| RNA-binding protein [Plasmodium cynomolgi strain B]
Length = 567
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFG 65
PQN + + L I LP +I ++++ +FS YG+ ++ S G + C FV F
Sbjct: 177 PQNIESGVDQAKLFIGSLPKSITEESVKEMFSPYGSVEEVFIMKDNSTGLGKGCSFVKFA 236
Query: 66 NEPLASQAQMQLNGLRFL 83
+ A A LNG + L
Sbjct: 237 YKEQALYAINSLNGKKTL 254
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I H+P+ Q L + FS +G A S GR R FV + + A+ A Q+
Sbjct: 428 LFIFHVPNEWHQTDLIQAFSPFGELLSARIATEKSTGRNRGFAFVSYESIESAAAAISQM 487
Query: 78 NGLRFLGKVLSV 89
NG L K L V
Sbjct: 488 NGFMALNKKLKV 499
>gi|307196422|gb|EFN78011.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Harpegnathos
saltator]
Length = 647
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNC--VFVDFGNEPLASQAQMQLNG 79
+L+ +LP + + L ++FS+YG R N VFV + + A QA QLNG
Sbjct: 41 ILVSNLPPQVRLEDLDQLFSNYGQIQHSEKVPTRDSNTQTVFVIYETQDQAQQALSQLNG 100
Query: 80 LRFLGKVLSVERAS 93
+ G L VE +S
Sbjct: 101 YNYEGHTLKVEMSS 114
>gi|224087249|ref|XP_002190976.1| PREDICTED: ELAV-like protein 1-like [Taeniopygia guttata]
gi|449266784|gb|EMC77794.1| ELAV-like protein 1 [Columba livia]
Length = 326
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|255555523|ref|XP_002518798.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542179|gb|EEF43723.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 438
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 19 LVTLLIKHLPDAIPQDTLS-RIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
V L + DA+ Q+T S + S GA V + GR + FV FG+E S+A M++
Sbjct: 201 FVGDLAADVTDAMLQETFSSKYLSVKGAKVVTDLNTGRSKGYGFVRFGDENERSRAMMEM 260
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
NG+ + + + A+ + + +Q++
Sbjct: 261 NGVYCSSRPMRIGVATPKKSPAYQQQYSSQAL 292
>gi|300865997|ref|ZP_07110731.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
gi|300335988|emb|CBN55889.1| RNA-binding region RNP-1 [Oscillatoria sp. PCC 6506]
Length = 101
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + Q+ LS+ F+ YG +V+ G LR FV+ G E + A
Sbjct: 1 MSIYVGNLSYEVTQEHLSQTFAEYG--TVKRVQLPTDRETGSLRGFAFVEMGTEAEEAAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP EE
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPREE 82
>gi|156101369|ref|XP_001616378.1| RNA-binding protein [Plasmodium vivax Sal-1]
gi|148805252|gb|EDL46651.1| RNA-binding protein, putative [Plasmodium vivax]
Length = 513
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFG 65
PQN + + L I LP +I ++++ +FS YG+ ++ S G + C FV F
Sbjct: 177 PQNIESGVDQAKLFIGSLPKSITEESVKEMFSPYGSVEEVFIMKDNSTGLGKGCSFVKFA 236
Query: 66 NEPLASQAQMQLNGLRFL 83
+ A A LNG + L
Sbjct: 237 YKEQALYAINSLNGKKTL 254
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I H+P+ Q L + FS +G A S GR R FV + + A+ A Q+
Sbjct: 374 LFIFHVPNEWHQTDLIQAFSPFGELLSARIATEKSTGRNRGFAFVSYESIESAAAAISQM 433
Query: 78 NGLRFLGKVLSV 89
NG L K L V
Sbjct: 434 NGFMALNKKLKV 445
>gi|398341593|ref|ZP_10526296.1| RNA recognition motif-containing protein [Leptospira inadai
serovar Lyme str. 10]
gi|398346075|ref|ZP_10530778.1| RNA recognition motif-containing protein [Leptospira broomii str.
5399]
Length = 86
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLR 81
L + +L ++ ++ +FS+YG + G+ FV+ NE A A+ LNG
Sbjct: 6 LFVGNLNYSVGHSEINELFSNYGEVAFVKIIEGK--GFGFVEMANEQQAENAKNSLNGTE 63
Query: 82 FLGKVLSVERASKP 95
F G+ L+V+ A KP
Sbjct: 64 FKGRTLNVDVA-KP 76
>gi|320167853|gb|EFW44752.1| SNF [Capsaspora owczarzaki ATCC 30864]
Length = 262
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLR 81
L +++LP I QD + +F Y A S + FV++ NE +A+ A+ L+G +
Sbjct: 190 LFVQNLPQGITQDDIFNLFRGYTAGSCDVRLVPNRADIAFVEYENEGIAANAKATLHGYK 249
Query: 82 FLGKVLSVERASK 94
LSV + K
Sbjct: 250 MGDNNLSVTFSKK 262
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ D + D L IFS +G + V + GR + FV+F A +A
Sbjct: 190 FTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVA 249
Query: 76 QLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
+NG G++L V RA K E + FE MK+ V R Q
Sbjct: 250 DMNGKEINGRLLYVGRAQKRLERQSELKRKFE-----QMKQERVNRYQ 292
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 11 QNKQETENL---VTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFG 65
Q KQE N V L +K+L D I + L + FS YG S+ GR + FV F
Sbjct: 282 QMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGRSKGFGFVCFS 341
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
+ A++A ++NG K L V A + E
Sbjct: 342 SPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L IFS +G + V GR R FV++GN A +A
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG G+++ V RA K
Sbjct: 250 EMNGKEVNGRMIYVGRAQK 268
>gi|301773128|ref|XP_002921958.1| PREDICTED: ELAV-like protein 1-like isoform 2 [Ailuropoda
melanoleuca]
Length = 325
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|355685803|gb|AER97853.1| ELAV-like protein 1 [Mustela putorius furo]
Length = 343
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 40 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 99
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 100 NGLRLQSKTIKVSYA-RPSSE 119
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+L D + + L +FS YG SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A ++L+G GKVL V RA K E
Sbjct: 253 QKAVLELHGKSMDGKVLYVGRAQKKIE 279
>gi|168004946|ref|XP_001755172.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693765|gb|EDQ80116.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 616
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLR 81
L I + I ++ L F+H+G + R C F+DF + A+ A+ LNG R
Sbjct: 194 LWIGRVDPLICEEELLSAFNHFG--DITGWKFLRQSGCCFIDFRSPECAAMAKATLNGTR 251
Query: 82 FLGKVLSVERASKPNEEN 99
F + ++VE + P N
Sbjct: 252 FGNQCINVEYKNAPAHRN 269
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + + +LP +I +D+L +F +G S V +GR + FVD N+ A
Sbjct: 1 MNIYVGNLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIE 60
Query: 76 QLNGLRFLGKVLSVERA 92
+LNG G+ + V +A
Sbjct: 61 KLNGHELDGRTIVVNKA 77
>gi|384916047|ref|ZP_10016247.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
gi|384526575|emb|CCG92118.1| RNA-binding protein (RRM domain) (fragment) [Methylacidiphilum
fumariolicum SolV]
Length = 99
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQA 73
N L + +LP I ++ L +F YG + + G+ R FV A A
Sbjct: 2 NRTRLYVGNLPFRISENDLRELFEQYGQVNEINLIVDKMTGQSRGFAFVTMETSQAAQSA 61
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKHKHFE 105
LNG G+ + V A KP EE H+H E
Sbjct: 62 IDSLNGTSISGRQIVVNEA-KPREERPHRHRE 92
>gi|341882525|gb|EGT38460.1| hypothetical protein CAEBREN_15135 [Caenorhabditis brenneri]
Length = 84
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQMQ 76
++ + + P +D + FS+ G ++VR C GR R FV+F +E A +A +
Sbjct: 7 SVYVGNAPYQTSEDEIGSFFSNVGHVTNVRIVCDRETGRPRGFAFVEFADEAGAQRAVNE 66
Query: 77 LNGLRFLGKVLSVERASK 94
LNG F G+ L V AS+
Sbjct: 67 LNGADFNGRQLRVNLASR 84
>gi|332852452|ref|XP_001156587.2| PREDICTED: ELAV-like protein 1 isoform 1 [Pan troglodytes]
gi|397477357|ref|XP_003810039.1| PREDICTED: ELAV-like protein 1 [Pan paniscus]
gi|426386983|ref|XP_004059958.1| PREDICTED: ELAV-like protein 1 isoform 2 [Gorilla gorilla gorilla]
gi|194375035|dbj|BAG62630.1| unnamed protein product [Homo sapiens]
Length = 353
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 109 NGLRLQSKTIKVSYA-RPSSE 128
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L +K+L +I D L ++FS +G S+ C R N + FV F AS+A ++
Sbjct: 16 LYMKNLDYSIDDDKLKQLFSQFG--SITSCKVMRDPNGISRGSGFVAFTTPEEASRAILE 73
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
+NG +GK L V A + +E + +AQ
Sbjct: 74 MNGKMVVGKPLYVALAQR--KEVRRARLQAQ 102
>gi|45382283|ref|NP_990164.1| ELAV-like protein 1 [Gallus gallus]
gi|5738249|gb|AAD50313.1|AF176673_1 RNA-binding protein HuA [Gallus gallus]
Length = 326
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|119589356|gb|EAW68950.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_b [Homo sapiens]
Length = 445
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 141 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 200
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 201 NGLRLQSKTIKVSYA-RPSSE 220
>gi|293336608|ref|NP_001168401.1| uncharacterized protein LOC100382170 [Zea mays]
gi|223948043|gb|ACN28105.1| unknown [Zea mays]
gi|414585352|tpg|DAA35923.1| TPA: hypothetical protein ZEAMMB73_028165 [Zea mays]
Length = 432
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 5 PFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDF 64
P G Q++ + N T+ + L + +DTL ++FS YG G + C FV F
Sbjct: 274 PNSQGAQSENDPNN-TTIFVGGLDPNVTEDTLKQVFSPYGEVVHVKIPVG--KRCGFVQF 330
Query: 65 GNEPLASQAQMQLNGLRF--------LGKVLSVERASKPNEENK 100
P A QA + L G G+ LS ++A E N+
Sbjct: 331 VTRPSAEQALLMLQGALIGAQNVRLSWGRSLSNKQAQPQQESNQ 374
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNE 67
QNK + IK+ D + + L +FS YG + V S+G+ + FV F +
Sbjct: 183 QNK--ANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSH 240
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G++L V RA K E
Sbjct: 241 EAAKKAVEEMNGKDINGQLLFVGRAQKKAE 270
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 8 SGPQNKQETEN--LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFG 65
+G +++QE + TL++ +L A ++TL +F + V + GR + FVDF
Sbjct: 441 TGEKSQQENQKGESTTLIVNNLSYAATEETLQEVFKKASSIRVPQNNQGRPKGYAFVDFA 500
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERAS 93
A +A LN G+ + +E +S
Sbjct: 501 TAEDAKEALNSLNNTEIEGRTIRLEFSS 528
>gi|193215305|ref|YP_001996504.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
gi|193088782|gb|ACF14057.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
Length = 104
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + + +L + ++ L +FS YG A+ + +G+ R FVD NE A QA
Sbjct: 1 MNIYVGNLSYTLTENELRDVFSEYGEVASANIIVDKYSGKSRGFGFVDMPNEADAEQAIE 60
Query: 76 QLNGLRFLGKVLSVERA 92
LNG + G+ L V A
Sbjct: 61 ALNGSQLDGRSLKVNEA 77
>gi|196010401|ref|XP_002115065.1| hypothetical protein TRIADDRAFT_28658 [Trichoplax adhaerens]
gi|190582448|gb|EDV22521.1| hypothetical protein TRIADDRAFT_28658 [Trichoplax adhaerens]
Length = 309
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNC------VFVDFGNEPLASQAQM 75
L++ +LP ++ QD + +FS G V C R +N FV + + A++A
Sbjct: 10 LIVNYLPQSMTQDEIQSLFSSCG--KVISCKLVRDKNSHHSLGYAFVKYEDVADANKAIS 67
Query: 76 QLNGLRFLGKVLSVERA 92
LNGLR KV+ V A
Sbjct: 68 SLNGLRLQSKVIKVSYA 84
>gi|431900165|gb|ELK08079.1| ELAV-like protein 1 [Pteropus alecto]
Length = 401
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 14 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 73
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 74 NGLRLQSKTIKVSYA-RPSSE 93
>gi|434392800|ref|YP_007127747.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
gi|428264641|gb|AFZ30587.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
Length = 103
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ L ++F YG SV+ P GR+R FV+ G E + A
Sbjct: 1 MSIYVGNLSYQVEQEDLKQVFLEYGDVKSVQLPTDRETGRVRGFAFVEMGTEAEEAAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 61 ALDGAEWMGRNLKVNKA-KPRED 82
>gi|195503078|ref|XP_002098501.1| GE10405 [Drosophila yakuba]
gi|194184602|gb|EDW98213.1| GE10405 [Drosophila yakuba]
Length = 383
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP P D L R+F++YG SV C + C FV N +A A LN
Sbjct: 4 TAKVFVGSLPRCKP-DELRRLFTNYG--SVVECDV--MNRCAFVHLENTDMAEAAIAALN 58
Query: 79 GLRFLGKVLSVERASKP 95
G F G+ + VE A +P
Sbjct: 59 GTIFKGQPIVVE-AGRP 74
>gi|172038249|ref|YP_001804750.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|354554398|ref|ZP_08973703.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
gi|171699703|gb|ACB52684.1| RNA-binding protein [Cyanothece sp. ATCC 51142]
gi|353554077|gb|EHC23468.1| RNP-1 like RNA-binding protein [Cyanothece sp. ATCC 51472]
Length = 97
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + ++ LS +F+ YG V+ GR+R FV+ ++ QA
Sbjct: 1 MSIYVGNLSYDVTKEDLSEVFTDYG--EVKRVHIPTDRDTGRMRGFAFVEMNSDDQEEQA 58
Query: 74 QMQLNGLRFLGKVLSVERASK 94
L+G ++G+ L V +A +
Sbjct: 59 ISTLDGAEWMGRTLKVNKAKE 79
>gi|428313428|ref|YP_007124405.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
gi|428255040|gb|AFZ20999.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113]
Length = 93
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + + LS +F+ YG +V+ GR R FV+ E A
Sbjct: 1 MSIYVGNLSYQVTSEDLSSVFAEYG--TVKRVQIPTDRETGRSRGFGFVEMETEAEEDAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKH 101
+L+G ++G+ L V +A KP E+ K
Sbjct: 59 IQELDGAEWMGRSLKVNKA-KPREDQKR 85
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + IK+L I + S +F +G + S+ + R FV++ N A +A
Sbjct: 245 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 304
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSISSM 112
+LN + GK L V RA K + EE K +E + M
Sbjct: 305 DELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQMKLEKM 344
>gi|260796311|ref|XP_002593148.1| hypothetical protein BRAFLDRAFT_209787 [Branchiostoma floridae]
gi|260796325|ref|XP_002593155.1| hypothetical protein BRAFLDRAFT_143355 [Branchiostoma floridae]
gi|229278372|gb|EEN49159.1| hypothetical protein BRAFLDRAFT_209787 [Branchiostoma floridae]
gi|229278379|gb|EEN49166.1| hypothetical protein BRAFLDRAFT_143355 [Branchiostoma floridae]
Length = 88
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 33 QDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88
+ TL ++F+ YG ++ R R F+ F N A A ++NG GKV+
Sbjct: 21 ETTLEKLFNKYGKIVEVLLMKDKITARSRGFGFITFENPRDAEVAVKEMNGQDIAGKVIK 80
Query: 89 VERASKP 95
V+RA+KP
Sbjct: 81 VDRATKP 87
>gi|395854600|ref|XP_003799771.1| PREDICTED: RNA-binding protein 41 [Otolemur garnettii]
Length = 413
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFQMMTGRMRGQAFITFPNTEMACQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLHGKILVIE 383
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 13 KQETEN------LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
KQE +N + +K+L + +D L IF +G ++ V GR + FV+
Sbjct: 206 KQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVN 265
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F + A+QA +LNG +F K V RA K +E
Sbjct: 266 FESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSE 299
>gi|296005552|ref|XP_002809092.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|225632040|emb|CAX64373.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
Length = 414
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
S NK++ + T+ + +LP+ L R FSHYG ++++ + G+ R F++F
Sbjct: 220 SNETNKRKIKPGCTIFVFYLPNDWSDKDLKRHFSHYGNILGATIKRETNGKSRGYGFINF 279
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSV 89
N+ A A +NG K L V
Sbjct: 280 ENQQSAINAVAGMNGFNAGNKYLKV 304
>gi|218132093|ref|ZP_03460897.1| hypothetical protein BACEGG_03720 [Bacteroides eggerthii DSM
20697]
gi|317477123|ref|ZP_07936364.1| RNA recognition domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
gi|217985743|gb|EEC52084.1| hypothetical protein BACEGG_03720 [Bacteroides eggerthii DSM
20697]
gi|316906666|gb|EFV28379.1| RNA recognition domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
Length = 99
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I L I L+ +F+ +G A + GR R FV+ N+ +A
Sbjct: 1 MNIYISGLSYGINNADLTNLFAEFGEVSSAKVIFDRETGRSRGFAFVEMNNDTEGQKAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+LNG+ + KV+SV A +P EE
Sbjct: 61 ELNGVEYDNKVISVSVA-RPREE 82
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L + + L + FS+YG+ + V +G+ + FV+F + A+ A
Sbjct: 201 FTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVE 260
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
+LNG F KV V RA + E
Sbjct: 261 KLNGTTFNDKVWYVGRAQRKGE 282
>gi|47198027|emb|CAF89020.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCS--AGRLRNCVFVDFGNEPLASQAQ 74
+ IK+ + + L +FS +G + SVR GR R FV+F + A +A
Sbjct: 21 KFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAV 80
Query: 75 MQLNGLRFLGKVLSVERASK 94
++NG GKV+ V RA K
Sbjct: 81 DEMNGTELNGKVIYVGRAQK 100
>gi|411119813|ref|ZP_11392189.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
gi|410709969|gb|EKQ67480.1| RRM domain-containing RNA-binding protein [Oscillatoriales
cyanobacterium JSC-12]
Length = 90
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L ++ + +FS YG S GR R FVD ++ A
Sbjct: 1 MTIYVGNLSFQAEEEDIREVFSEYGKVSRVSLPTDRETGRKRGFAFVDMESDAEEDAAIA 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHK 102
+L+G +LG+ L V +A KP E ++
Sbjct: 61 ELDGAEWLGRELKVNKA-KPRESGGNR 86
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 3 TAPF----DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGR 55
APF D + + T + +K+ + + + L +FS YG + V S+G+
Sbjct: 281 VAPFRSRRDREAELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGK 340
Query: 56 LRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
+ FV F + A +A ++NG G+++ V RA K E
Sbjct: 341 SKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEE 382
>gi|349942059|dbj|GAA29907.1| ELAV like protein 2/3/4 [Clonorchis sinensis]
Length = 645
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 7 DSGPQNKQET-----ENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLR 57
+SGP N EN L+I +LP + Q+ + +FS G VR ++G
Sbjct: 102 NSGPVNNTAVTNSPPENKTNLIINYLPPNMSQEEVRALFSSIGEVESCKLVREKTSGESL 161
Query: 58 NCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
FV F + A +A LNGLR K + V A +P+ E
Sbjct: 162 GYAFVKFYDPLDAGKAIKTLNGLRLQNKTVKVSLA-RPSSE 201
>gi|19074456|ref|NP_585962.1| POLYADENYLATE-BINDING PROTEIN 1 [Encephalitozoon cuniculi GB-M1]
gi|19069098|emb|CAD25566.1| POLYADENYLATE-BINDING PROTEIN 1 [Encephalitozoon cuniculi GB-M1]
Length = 333
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFG 65
FDS NK N+V P+D++ + S +G SV C + C F DF
Sbjct: 52 FDSTLLNKVYIGNIVA----------PRDSVQDLLSVFGPVSV-TCIGNK--ECAFADFD 98
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERAS 93
N A +++G+ F G+ L V R S
Sbjct: 99 NPHAAYLCMREIDGMVFEGRALKVGRTS 126
>gi|356521983|ref|XP_003529629.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 397
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEP 68
G QN+ + N T+ + +L + D L ++F HYG AG + C FV F +
Sbjct: 251 GAQNEHDPNN-TTIFVGNLDPNVTDDHLRQVFGHYGELVHVKIPAG--KRCGFVQFADRS 307
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A +A LNG G+ + + P+ +
Sbjct: 308 CAEEALRVLNGTLLGGQNVRLSWGRSPSNK 337
>gi|434391462|ref|YP_007126409.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
gi|428263303|gb|AFZ29249.1| RNP-1 like RNA-binding protein [Gloeocapsa sp. PCC 7428]
Length = 101
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD LS IF+ YG +V+ G R FV+ +E S A
Sbjct: 1 MSIYVGNLSFEVTQDDLSSIFAEYG--TVKRVQLPTDRETGLPRGFGFVEMESEAAESTA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENK 100
L+G ++G+ + V +A KP E+ +
Sbjct: 59 IEALDGAEWMGRTMKVNKA-KPREDRR 84
>gi|297275993|ref|XP_001092907.2| PREDICTED: ELAV-like protein 1 isoform 4 [Macaca mulatta]
Length = 387
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 161 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 220
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 221 QKAVLDLHGKSIDGKVLYVGRAQKKIE 247
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + + L IFS YG++ SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>gi|403376343|gb|EJY88148.1| hypothetical protein OXYTRI_18935 [Oxytricha trifallax]
Length = 208
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
++L + ++ ++ QD L F +G+ CS + F++F +E A A +LNG
Sbjct: 1 MSLFVGNISRSMRQDELHDEFDKFGS-----CSINFKGSYAFIEFKDERDAEDALTELNG 55
Query: 80 LRFLGKVLSVERASKP 95
F G+ L++E + K
Sbjct: 56 REFSGQRLAIEWSKKS 71
>gi|357626291|gb|EHJ76427.1| putative ELAV-like protein 1 [Danaus plexippus]
Length = 370
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLR 81
L++ ++P+ + +D + +FS G + C R FV++ A +A+ NGL
Sbjct: 17 LMVNYIPELMTRDMMYALFSAMG--KIESCKLIANRGYGFVEYEKHEDAEKARAAFNGLL 74
Query: 82 FLGKVLSVERASKPNEENKHKH 103
GK L V A N ENK H
Sbjct: 75 MQGKTLKVSFALL-NPENKVSH 95
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L IK+L I + L FS +G + + G + FV++ N A +A +N
Sbjct: 193 LYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMN 252
Query: 79 GLRFLGKVLSVERASKPNEENK--HKHFE 105
GL+F K L V RA K E + H+ FE
Sbjct: 253 GLKFGSKNLYVARAQKKAEREQILHRQFE 281
>gi|449330101|gb|AGE96365.1| polyadenylate-binding protein 1 [Encephalitozoon cuniculi]
Length = 333
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFG 65
FDS NK N+V P+D++ + S +G SV C + C F DF
Sbjct: 52 FDSTLLNKVYIGNIVA----------PRDSVQDLLSVFGPVSV-TCIGNK--ECAFADFD 98
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERAS 93
N A +++G+ F G+ L V R S
Sbjct: 99 NPHAAYLCMREIDGMVFEGRALKVGRTS 126
>gi|443477394|ref|ZP_21067245.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
gi|443017490|gb|ELS31918.1| RNP-1 like RNA-binding protein [Pseudanabaena biceps PCC 7429]
Length = 95
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+T+ + +L +D L+ +FS YG +V+ GR+R FVD ++ A
Sbjct: 1 MTIYVGNLSYQAAKDDLTSVFSDYG--TVKRVQLPTDQETGRVRGFAFVDMEDDAQEEAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
LN ++G+ L V +A KP E
Sbjct: 59 IAALNEAEWMGRTLRVNKA-KPRGE 82
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNE 67
PQ++ V L +K+L D I + L + FS +G S+ GR + FV F +
Sbjct: 294 PQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSP 353
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRN 120
A++A ++NG K L V A + +E + H Q + M + N
Sbjct: 354 EEATKAVTEMNGRIVATKPLYVALAQR--KEERQAHLSNQYMQRMASTSAVPN 404
>gi|119488026|ref|ZP_01621470.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
gi|119455315|gb|EAW36454.1| RNA-binding region protein [Lyngbya sp. PCC 8106]
Length = 100
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+++ + +L + ++ L +F+ YGA V+ S GR R FV+ G E A
Sbjct: 1 MSIYVGNLAYEVTEEDLKSVFAEYGA--VQRVSIPTDRETGRPRGFAFVEMGAESEEDAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNE 97
L+G ++G+ L V +A KP E
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRE 81
>gi|409991627|ref|ZP_11274872.1| RNP-1 like RNA-binding protein [Arthrospira platensis str. Paraca]
gi|291567422|dbj|BAI89694.1| RNA-binding protein [Arthrospira platensis NIES-39]
gi|409937517|gb|EKN78936.1| RNP-1 like RNA-binding protein [Arthrospira platensis str. Paraca]
Length = 181
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
V L + +LP + + L +F+ G A + G+ R FV ++ LA Q
Sbjct: 3 VRLYVGNLPKELDRKELQAVFAEEGDTISAKVITDRKTGKCRGFGFVTVQSDDLADQIVE 62
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
+ NG F L +ERA +P ++NK + E +
Sbjct: 63 KYNGFMFGDNALKIERA-QPRKKNKPESEEGR 93
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + D L +FS YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++ + D +F YG AS G+ R FV+F A++A
Sbjct: 236 NFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKA 295
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN + G+ L V RA K + EE K +EA
Sbjct: 296 VDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEA 330
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 37.7 bits (86), Expect = 0.87, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVD 63
D + + + + IK+ D + + L +FS YG + V +G+ + FV
Sbjct: 177 DREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVS 236
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQ 107
F N A +A ++NG G+++ V RA K E + FE Q
Sbjct: 237 FDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQ 282
>gi|221112058|ref|XP_002166471.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
[Hydra magnipapillata]
Length = 206
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR-LRNCVFVDFGNEPLASQAQMQL 77
+ + I LPD + L R F H+G S+R R F+ F + A A ++
Sbjct: 1 MSRIFIGGLPDDASRTELEREFEHFG--SMREVWVARNPPGFGFIVFDDPRDAEDAIREM 58
Query: 78 NGLRFLGKVLSVERASKPNEENKHK 102
+G R G + VE+A PN N+++
Sbjct: 59 DGRRVCGMRVRVEKARGPNSNNRNR 83
>gi|254424446|ref|ZP_05038164.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
gi|196191935|gb|EDX86899.1| RNA-binding protein, putative [Synechococcus sp. PCC 7335]
Length = 84
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQAQM 75
+ + +L + QD L+ +F YG +V+ + GR+R FVD ++ A
Sbjct: 3 VYVGNLSYDVTQDDLNSVFGEYG--TVKRVTLPTDRETGRVRGFAFVDLSSDEEEQAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
L+G ++G+ L V +A KP E
Sbjct: 61 ALDGAEWMGRDLRVNKA-KPRE 81
>gi|443320464|ref|ZP_21049562.1| RRM domain-containing RNA-binding protein [Gloeocapsa sp. PCC
73106]
gi|442789814|gb|ELR99449.1| RRM domain-containing RNA-binding protein [Gloeocapsa sp. PCC
73106]
Length = 158
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 20 VTLLIKHLPDAIP--QDTLSRIFSHYGASSVRP-CSAGRLRNC---VFVDFGNEPLASQA 73
V L + +LP P ++ L +F+ G + P R NC F+ N+ LA++
Sbjct: 3 VRLYVGNLPTKQPIEREDLKSLFAEVGETVSTPKVPKDRKGNCKGFAFITVANDELATEI 62
Query: 74 QMQLNGLRFLGKVLSVERA 92
+ NG F+G +L +E+A
Sbjct: 63 IEKYNGQEFMGSLLKIEKA 81
>gi|6324895|ref|NP_014964.1| Hsh49p [Saccharomyces cerevisiae S288c]
gi|2500588|sp|Q99181.1|HSH49_YEAST RecName: Full=Protein HSH49
gi|940850|emb|CAA62174.1| orf 06142 [Saccharomyces cerevisiae]
gi|1420700|emb|CAA99639.1| HSH49 [Saccharomyces cerevisiae]
gi|45270764|gb|AAS56763.1| YOR319W [Saccharomyces cerevisiae]
gi|151945399|gb|EDN63642.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190407618|gb|EDV10885.1| protein HSH49 [Saccharomyces cerevisiae RM11-1a]
gi|207340889|gb|EDZ69099.1| YOR319Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272549|gb|EEU07528.1| Hsh49p [Saccharomyces cerevisiae JAY291]
gi|259149795|emb|CAY86599.1| Hsh49p [Saccharomyces cerevisiae EC1118]
gi|285815190|tpg|DAA11083.1| TPA: Hsh49p [Saccharomyces cerevisiae S288c]
gi|323303013|gb|EGA56817.1| Hsh49p [Saccharomyces cerevisiae FostersB]
gi|323307266|gb|EGA60547.1| Hsh49p [Saccharomyces cerevisiae FostersO]
gi|323331441|gb|EGA72857.1| Hsh49p [Saccharomyces cerevisiae AWRI796]
gi|323335366|gb|EGA76653.1| Hsh49p [Saccharomyces cerevisiae Vin13]
gi|323346364|gb|EGA80653.1| Hsh49p [Saccharomyces cerevisiae Lalvin QA23]
gi|365762976|gb|EHN04508.1| Hsh49p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296647|gb|EIW07749.1| Hsh49p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 213
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRP----CSAGRLRNCVFVDFGNEPLASQAQ 74
+ L IK+L D+I D L +IF+ +G P S G+L+ C +V F + A A
Sbjct: 107 IAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFYLSNGKLK-CAYVYFEDFEKADLAI 165
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKH 103
LN ++V+ A K N + K+
Sbjct: 166 KSLNNQLVANNRITVDYAFKENGKGNAKY 194
>gi|348563749|ref|XP_003467669.1| PREDICTED: RNA-binding protein 41-like [Cavia porcellus]
Length = 460
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQL 77
L +K+L + + L +F+ + + P GR+R F+ F ++ A +A +
Sbjct: 358 LYLKNLSPRVTERDLVSLFARFQEKTGPPIQFQMMTGRMRGQAFITFPDKKKAWEALHLV 417
Query: 78 NGLRFLGKVLSVERASKPNEEN 99
NG + GK+L +E K N+++
Sbjct: 418 NGYKLHGKILVIEFGKKKNQQS 439
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++Q V L +K+L D+I + L +FS YG S+ G + FV
Sbjct: 280 FEQMKQDRQTRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMTEGGHSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F + A++A ++NG K L V A + E
Sbjct: 340 FSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEE 373
>gi|328710505|ref|XP_003244285.1| PREDICTED: hypothetical protein LOC100573714 [Acyrthosiphon pisum]
Length = 725
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ ++ + + D++ + L FS +G ++ C R C + F E A A +N
Sbjct: 83 IYSIWVNGIADSVTNEYLESHFSQFGP--IQKCLIDRSNKCALLCFQEESHAKYAAFVMN 140
Query: 79 GLRFLGKVLSVERASKP 95
G +++ V+ ASKP
Sbjct: 141 GRHLENEIIHVQLASKP 157
>gi|156083038|ref|XP_001609003.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain containing
protein [Babesia bovis T2Bo]
gi|154796253|gb|EDO05435.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP) domain containing
protein [Babesia bovis]
Length = 420
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA------SSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
L I H+P+ L FS +G +S R S GR + FV + A+QA
Sbjct: 289 LFIFHIPNEWTHHDLVHTFSQFGKILSSRIASDR--STGRHKGYAFVSYDTPESAAQAIQ 346
Query: 76 QLNGLRFLGKVLSV 89
LNG LGK L V
Sbjct: 347 HLNGFTVLGKRLKV 360
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNE 67
Q + E L IKHLP+ + +D L FS +G + + + G R FV+F +
Sbjct: 282 QERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRGFGFVNFDSA 341
Query: 68 PLASQAQMQLNGLRFLGKVLSV 89
A+ A +++G GK L V
Sbjct: 342 DEAAAAIQEMHGSMIDGKPLYV 363
>gi|323352217|gb|EGA84754.1| Hsh49p [Saccharomyces cerevisiae VL3]
Length = 188
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRP----CSAGRLRNCVFVDFGNEPLASQAQ 74
+ L IK+L D+I D L +IF+ +G P S G+L+ C +V F + A A
Sbjct: 82 IAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFYLSNGKLK-CAYVYFEDFEKADLAI 140
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKH 103
LN ++V+ A K N + K+
Sbjct: 141 KSLNNQLVANNRITVDYAFKENGKGNAKY 169
>gi|298714689|emb|CBJ27614.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 473
Score = 37.7 bits (86), Expect = 0.94, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 11 QNKQETENL-----VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVF 61
Q Q T NL L + H+P+ + + L R+FS +G A + + GR R F
Sbjct: 147 QPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGF 206
Query: 62 VDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
V + N A +A Q+NG + K L V+ E
Sbjct: 207 VSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERE 243
>gi|407790590|ref|ZP_11137683.1| RNA recognition motif-containing protein [Gallaecimonas
xiamenensis 3-C-1]
gi|407203713|gb|EKE73698.1| RNA recognition motif-containing protein [Gallaecimonas
xiamenensis 3-C-1]
Length = 88
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ L + +L + D L+++F YG A V+ GR R FV+ ++ A
Sbjct: 1 MNLFVSNLSFRVEADALAQLFGQYGDVQRAHIVKDKETGRSRGFGFVEMADKATGENAIK 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
LNG F G+ L V A +P E+
Sbjct: 61 ALNGQDFEGRPLVVNEA-RPREQ 82
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L DA D L R+F +G S V G+ + FV+F N A+ A +LN
Sbjct: 218 VYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELN 277
Query: 79 GLRFLGKVLSVERASKPNE 97
G + K V RA K +E
Sbjct: 278 GKKMDDKEWYVGRAQKKSE 296
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-----GRLRN 58
A +D + + + V L +K+L D I D L +F +G ++ C G +
Sbjct: 303 ARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFG--TIISCKVMRDPQGHSKG 360
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
FV F A++A ++NG K + V A K +E + +AQ
Sbjct: 361 SGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDERRRFNAAQAQ 409
>gi|33863352|ref|NP_894912.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9313]
gi|33640801|emb|CAE21256.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9313]
Length = 111
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+T+ I +L Q+ L +FS YG V+ CS GR R FV+ N+ +A
Sbjct: 1 MTIYIGNLSFQAEQEDLLDLFSQYG--EVKTCSLPLDRETGRKRGFAFVEMTNDADEQKA 58
Query: 74 QMQLNGLRFLGKVLSVERAS 93
L + ++G+++ V +A+
Sbjct: 59 IDDLQDVEWMGRMIRVNKAT 78
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L DA D L R+F +G S V G+ + FV+F N A+ A +LN
Sbjct: 218 VYVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELN 277
Query: 79 GLRFLGKVLSVERASKPNE 97
G + K V RA K +E
Sbjct: 278 GKKMDDKEWYVGRAQKKSE 296
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-----GRLRN 58
A +D + + + V L +K+L D I D L +F +G ++ C G +
Sbjct: 303 ARYDQERKERSDKYQGVNLYLKNLDDTIDDDKLRELFHGFG--TIISCKVMRDPQGHSKG 360
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
FV F A++A ++NG K + V A K +E + +AQ
Sbjct: 361 SGFVAFSTTEEANRAMTEMNGRMVANKPIYVALAQKRDERRRFNAAQAQ 409
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L +A D L F YG+ S V G+ R FV+F N A++A
Sbjct: 224 FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVE 283
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
LNG +F K V +A K +E
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSE 305
>gi|444723044|gb|ELW63709.1| putative RNA-binding protein 19 [Tupaia chinensis]
Length = 1033
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 26/113 (23%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV---------FVDFGNEPLAS 71
TL IK+L ++TL ++FS G V+ CS R +N FV++ A
Sbjct: 835 TLFIKNLNFDTAEETLRKVFSKVGM--VKSCSISRKKNKAGALLSMGFGFVEYKKPEQAQ 892
Query: 72 QAQMQLNGLRFLGKVLSV---ERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
+A QL G G L V ERA+KP +I+S ++ V+R Q
Sbjct: 893 KALKQLQGHVVDGHKLEVRISERATKP------------AITSARKKQVSRKQ 933
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPL 69
K + + IK+ D + L +FS YG + V S+G+ + FV F +
Sbjct: 376 KNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEA 435
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNE 97
A A ++NG G+++ V RA K E
Sbjct: 436 AKNAVEEMNGKDINGQLIFVGRAQKKIE 463
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + D L+ +F +G A SV+ + +G+ + FV + A +A
Sbjct: 495 FTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVD 554
Query: 76 QLNGLRFLGKVLSVERASKPNEENKH--KHFE 105
++NG F GK + V RA K E +HFE
Sbjct: 555 EMNGKEFNGKRIYVGRAQKKGERQTELKRHFE 586
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNE 67
PQ++ V L +K+L D I + L + FS +G S+ GR + FV F +
Sbjct: 294 PQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSP 353
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
A++A ++NG K L V A + E H
Sbjct: 354 EEATKAVTEMNGKIVATKPLYVALAQRKEERQAH 387
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
V L +K+L D I + L + F+ +G S+ GR + FV F + A++A ++
Sbjct: 300 VNLYVKNLDDNIDDERLRKEFAQFGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEM 359
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEA---QSISSMK 113
NG + K L V A + +E++ H + Q I+SM+
Sbjct: 360 NGRIVVAKPLYVALAQR--KEDRKAHLASQYMQRITSMR 396
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L +A D L F YG+ S V G+ R FV+F N A++A
Sbjct: 224 FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVE 283
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
LNG +F K V +A K +E
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSE 305
>gi|443895067|dbj|GAC72413.1| RNA-binding protein SART3 [Pseudozyma antarctica T-34]
Length = 1212
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSA--GRLRNCVFVDFGNEP 68
+ QET N L + I D + F YG + VR G LR FVDF N
Sbjct: 961 DAQETGN--ELFVSGFARNITDDDMRTYFEAYGKVTGVRLLRTPEGALRGIGFVDFENAL 1018
Query: 69 LASQAQMQLNGLRFLGKVLSVERA 92
A +A +LN ++ GK ++V A
Sbjct: 1019 EAQRAMRELNSTKWRGKTIAVTMA 1042
>gi|126320999|ref|XP_001372243.1| PREDICTED: RNA-binding protein 41-like [Monodelphis domestica]
Length = 415
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR++ F+ F + +A QA +
Sbjct: 312 VLYLKNLSPRVTEKELVSLFARFQEDKGTPIQFRVLTGRMKGQAFITFPSTEMAQQALLL 371
Query: 77 LNGLRFLGKVLSVE 90
+NG LGK L +E
Sbjct: 372 VNGYNLLGKTLVIE 385
>gi|390344759|ref|XP_782270.3| PREDICTED: CUGBP Elav-like family member 1-A-like
[Strongylocentrotus purpuratus]
Length = 605
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFG 65
PQ Q + + + + +P A +D L +FS +G + +R G + C FV F
Sbjct: 47 PQTAQPDPDSLKMFVGQIPKAYEEDKLREMFSEFGPVYELNVLRDKKTGESKGCAFVTFY 106
Query: 66 NEPLASQAQMQLNGLRFL 83
+ +A +AQ +L+ + L
Sbjct: 107 SGVVADKAQKELHNRKVL 124
>gi|340516569|gb|EGR46817.1| predicted protein [Trichoderma reesei QM6a]
Length = 1062
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 8 SGPQNKQETENLVT----LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCV 60
S P K+ E V + + L + +D L +FS YG ++ GR R
Sbjct: 743 SDPSRKKNREGAVAEGREVHVSGLNPSTSEDELRDVFSKYGTIQRVNIPRSINGRGRGFA 802
Query: 61 FVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPN 96
FV FG + A +A +LN +F +++ VE SKP+
Sbjct: 803 FVVFGTKDEAEKATSELNKAKFQNQIIEVE-VSKPS 837
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|374299435|ref|YP_005051074.1| RNP-1 like RNA-binding protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332552371|gb|EGJ49415.1| RNP-1 like RNA-binding protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 100
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L + +LP + +D + +FS YG S + GRLR FV+ +E A +A L
Sbjct: 5 LYVGNLPFSASEDDIRDLFSTYGEVNSVSLITDRETGRLRGFGFVEMDDEG-AREAIQSL 63
Query: 78 NGLRFLGKVLSVERA-SKP 95
+G F G+ L V A KP
Sbjct: 64 DGKDFQGRNLKVNEAQEKP 82
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNE 67
PQ++ V L +K+L D I + L + FS +G S+ GR + FV F +
Sbjct: 294 PQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSP 353
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
A++A ++NG K L V A + E H
Sbjct: 354 EEATKAVTEMNGKIVATKPLYVALAQRKEERQAH 387
>gi|346971381|gb|EGY14833.1| nucleolar protein [Verticillium dahliae VdLs.17]
Length = 785
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 22 LLIKHLPDAIPQDT-LSRIFSHYGASSVR--PCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L+I++LP +I L +F YG P + GRLR FV E A A +N
Sbjct: 152 LIIRNLPWSIKTPAQLQALFQSYGKIKFADLPMNNGRLRGFGFVTIRGEKNAENAIKAMN 211
Query: 79 GLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEA 115
G G+ ++V+ A + E + + EA + K A
Sbjct: 212 GKGIDGRTIAVDWAVEKEEWDNQRGAEADTEKPAKSA 248
>gi|426402318|ref|YP_007021289.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|425858986|gb|AFY00022.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
Length = 104
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ + +L + QD L+++F+ +G + + GR + FV+ E A A +L
Sbjct: 5 IYVGNLSFNVDQDQLNQVFAEFGTVDTVNVITDRETGRSKGFAFVEMSTETEARAAIEKL 64
Query: 78 NGLRFLGKVLSVERASKPNE 97
NG+ G+ +++ A KP E
Sbjct: 65 NGMDLAGRAMNISEA-KPQE 83
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++ + D +F +G +S R G+ R FV+F + AS+A
Sbjct: 240 NFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN F G+ L V RA K + EE + +EA
Sbjct: 300 VEELNEKEFHGQNLYVGRAQKKHEREEELRRSYEA 334
>gi|167534603|ref|XP_001748977.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772657|gb|EDQ86307.1| predicted protein [Monosiga brevicollis MX1]
Length = 302
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQA 73
+ T+ + +LP + +++ G S V S GR + C +D GNE LA
Sbjct: 24 TMTTVFVNNLPWTATSEDVNQFVQDAGFSGLFAKVLMRSDGRSKGCALLDCGNESLAQAV 83
Query: 74 QMQLNGLRFLGKVLSVERASKP 95
+ NG FLG+ L V R +P
Sbjct: 84 IARCNGAEFLGRPLQV-RLDRP 104
>gi|126663185|ref|ZP_01734183.1| RNA binding protein [Flavobacteria bacterium BAL38]
gi|126624843|gb|EAZ95533.1| RNA binding protein [Flavobacteria bacterium BAL38]
Length = 111
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQM 75
+ + + LP ++ + L F YGA SV+ S GR + FV+ N+ A +A
Sbjct: 1 MNIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKGFGFVEMANDAEAQKAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISS 111
+LNG G+ + V + S+P E + + F+ + S
Sbjct: 61 ELNGGTIEGRKIVVNK-SEPKPEGERRSFDRNAGGS 95
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L +FS +G + SVR GR R FV+F + A +A
Sbjct: 188 FTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVD 247
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG GKV+ V RA K
Sbjct: 248 EMNGTELNGKVIYVGRAQK 266
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|194905856|ref|XP_001981271.1| GG11980 [Drosophila erecta]
gi|190655909|gb|EDV53141.1| GG11980 [Drosophila erecta]
Length = 382
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP P D L R+F++YG SV C + C FV N +A A LN
Sbjct: 4 TAKVFVGSLPRCKP-DELRRLFTNYG--SVVECDV--MNRCAFVHLENTDMAEAAIAALN 58
Query: 79 GLRFLGKVLSVERASKP 95
G F G+ + VE A +P
Sbjct: 59 GTIFKGQPIVVE-AGRP 74
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|113478077|ref|YP_724138.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
gi|110169125|gb|ABG53665.1| RNA-binding region RNP-1 [Trichodesmium erythraeum IMS101]
Length = 102
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QD LS +F+ YG +V+ GR R FV+ +E +A
Sbjct: 1 MSIYVGNLSYDVTQDDLSEVFAEYG--TVKRVQLPTDRETGRPRGFGFVEMSSENEEQKA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ + V +A KP E+
Sbjct: 59 IEALDGAEWMGRDIKVNKA-KPRED 82
>gi|449672683|ref|XP_004207769.1| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 2
[Hydra magnipapillata]
Length = 189
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR-LRNCVFVDFGNEPLASQAQMQL 77
+ + I LPD + L R F H+G S+R R F+ F + A A ++
Sbjct: 1 MSRIFIGGLPDDASRTELEREFEHFG--SMREVWVARNPPGFGFIVFDDPRDAEDAIREM 58
Query: 78 NGLRFLGKVLSVERASKPNEENKHK 102
+G R G + VE+A PN N+++
Sbjct: 59 DGRRVCGMRVRVEKARGPNSNNRNR 83
>gi|427729329|ref|YP_007075566.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427365248|gb|AFY47969.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 102
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + ++ + +F+ YG +V+ GRLR FV+ G + + A
Sbjct: 1 MSIYVGNLSYQVTEEDIKGVFAEYG--TVKRVQVPTDRETGRLRGFAFVEMGTDAEEAAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>gi|260825255|ref|XP_002607582.1| hypothetical protein BRAFLDRAFT_71460 [Branchiostoma floridae]
gi|229292930|gb|EEN63592.1| hypothetical protein BRAFLDRAFT_71460 [Branchiostoma floridae]
Length = 187
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 26 HLPDAIP--QDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
HLP P +++L FS YG + GR R FV + N+ AS+A+ +N
Sbjct: 37 HLPQFYPPPRESLEATFSEYGEIIDCKVITDRETGRSRGFGFVTYSNDSDASEAKKCMNN 96
Query: 80 LRFLGKVLSVERASKPNEE 98
G+ + V+ ASK +E+
Sbjct: 97 TDLDGRQIRVDYASKKSED 115
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-----GRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L D+I + L +FS +G ++ C G R FV F AS+A ++
Sbjct: 315 LYVKNLDDSIGDEKLKELFSPFG--TITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLE 372
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
+NG + K L V A + +E++ +AQ
Sbjct: 373 MNGKMVVSKPLYVTLAQR--KEDRRARLQAQ 401
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L ++ D L F +G ++ V G+ + FV+F N A++A LN
Sbjct: 212 VFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALN 271
Query: 79 GLRFLGKVLSVERASKPNE-ENKHKH-FEAQSISSMKEAA 116
G F K V +A K +E EN+ K FE SMKEAA
Sbjct: 272 GKNFDDKEWYVGKAQKKSERENELKQRFE----QSMKEAA 307
>gi|292659621|pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
gi|292659622|pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
gi|292659623|pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
gi|292659624|pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 7 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 66
Query: 78 NGLRFLGKVLSVERA 92
NGLR K + V A
Sbjct: 67 NGLRLQSKTIKVSYA 81
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Length = 143
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQA 73
N L + +LP I ++ L IF YG + + G+ R FV + A A
Sbjct: 45 NRTRLYVGNLPFRISENDLREIFEQYGQVNEINLIVDKMTGQSRGFAFVTMESSQAAQSA 104
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKHKHFE 105
LNG G+ + V A KP EE H+H E
Sbjct: 105 INNLNGSSVSGRQIVVNEA-KPREERPHRHRE 135
>gi|66357806|ref|XP_626081.1| SPAC25G10.01-like RRM domain containing protein [Cryptosporidium
parvum Iowa II]
gi|46227164|gb|EAK88114.1| SPAC25G10.01-like RRM domain containing protein [Cryptosporidium
parvum Iowa II]
gi|323510225|dbj|BAJ78006.1| cgd5_1330 [Cryptosporidium parvum]
Length = 253
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFV 62
PQ ++ + TL + L +D L R+F YG V C +G R FV
Sbjct: 60 APQIERSNDPSCTLYVCRLSLKTKEDDLRRLFEDYG--EVTDCHLVTNPLSGESRCFGFV 117
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVE--RASKP 95
GNE A++A+ L+G + L VE R +KP
Sbjct: 118 TMGNEEEAARAKDALDGKEYQDASLKVETARRAKP 152
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L DAI + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAY 377
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q+K + L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 255 FEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVC 314
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
F + A++A ++NG K L V A + +E + H Q I M
Sbjct: 315 FSSPEEATKAVSEMNGRIVATKPLYVALAQR--KEERQAHLTNQYIQRM 361
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-----GRLRN 58
A F+ + + E V L +K+L D I + L IFS YG ++ C G+ R
Sbjct: 290 AKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYG--TIVSCKVMRDPQGQSRG 347
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
FV F + A++A ++NG K L V A + E
Sbjct: 348 SGFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQRKEE 386
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ +K+L D+ D L ++F YG S V + G+ + FV+F + A++A LN
Sbjct: 205 VYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALN 264
Query: 79 GLRFLGKVLSVERASKPNE 97
G +F K V RA K +E
Sbjct: 265 GKKFDEKEWYVGRAQKKSE 283
>gi|410928273|ref|XP_003977525.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Takifugu rubripes]
Length = 368
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCV----------FVDFGNE 67
L++ +LP ++ Q+ L +FS G A +R AG + V FV+F N
Sbjct: 57 LIVNYLPQSMSQEELRSLFSSVGDVESAKLIRDKVAGNTQTLVHHRSHSLGYGFVNFVNP 116
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A +A LNGLR K L V A +P+ E
Sbjct: 117 SDAVRAINTLNGLRLQSKTLKVSYA-RPSSE 146
>gi|296121725|ref|YP_003629503.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
gi|296014065|gb|ADG67304.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM
3776]
Length = 104
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L + +L + L ++FS +G A V GR + FV+FG+ AS A +
Sbjct: 5 LYVGNLTYDVNNSGLEQLFSSFGEVRSAQVVMDRETGRSKGFGFVEFGDSQSASDAINAM 64
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NG G+ L+V A +P EE
Sbjct: 65 NGKDVNGRALTVNEA-RPREE 84
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 5 PFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCSAGRLRNCVFV 62
FD Q + V L +K+L D+I + L + FS +G S+ GR + FV
Sbjct: 195 KFDRLKQERMNRYQGVNLYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTEGGRSKGFGFV 254
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94
F + A++A ++NG + K L V A +
Sbjct: 255 CFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
>gi|320580913|gb|EFW95135.1| eukaryotic translation initiation factor 3 Rna-binding subunit,
putative [Ogataea parapolymorpha DL-1]
Length = 286
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEP 68
++E ++ TL + L + + + L +F YG A+ +R R + FV+F N
Sbjct: 198 RKERDDSTTLRVTSLNEQVDEMMLREVFERYGIIKRATVLRDRETRRSKGIAFVEFENVN 257
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKP 95
A +A LNG F+ ++ V+ SKP
Sbjct: 258 DAQRALEGLNGRGFMNLIMKVD-WSKP 283
>gi|82541152|ref|XP_724838.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479626|gb|EAA16403.1| FCA gamma-related [Plasmodium yoelii yoelii]
Length = 387
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFG 65
PQN + + L I LP I ++++ +FS YG+ ++ S G + C FV F
Sbjct: 175 PQNVESGVDQAKLFIGSLPKNITEESIKDMFSVYGSVEEVFIMKDNSTGLGKGCSFVKFA 234
Query: 66 NEPLASQAQMQLNGLRFL 83
+ A A LNG + L
Sbjct: 235 YKEQALYAISSLNGKKTL 252
>gi|70939105|ref|XP_740139.1| RNA binding protein [Plasmodium chabaudi chabaudi]
gi|56517645|emb|CAH76403.1| RNA binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 248
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFG 65
PQN + + L I LP I ++++ +FS YG+ ++ S G + C FV F
Sbjct: 174 PQNVESGVDQAKLFIGSLPKNITEESIKDMFSVYGSVEEVFIMKDNSTGLGKGCSFVKFA 233
Query: 66 NEPLASQAQMQLNG 79
+ A A LNG
Sbjct: 234 YKEQALYAISSLNG 247
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLAS 71
+ + + IK+ D + + L +FS YG + V S+G+ + FV F A+
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDAN 245
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
+A ++NG GK++ V RA K E + FE +K+ ++R Q
Sbjct: 246 KAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFE-----QLKQERISRYQ 292
>gi|398013681|ref|XP_003860032.1| hypothetical protein, unknown function, partial [Leishmania
donovani]
gi|322498251|emb|CBZ33325.1| hypothetical protein, unknown function, partial [Leishmania
donovani]
Length = 123
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L +++LP + + L IFS +G + +R +G+ FV + A +A
Sbjct: 21 LFVRYLPREVDDNRLREIFSAFGKITSSMVMRDIYSGQSLGTAFVRYEEHEEALRAMRDA 80
Query: 78 NGLRFLGKVLSVERASKPNEE 98
+G+ LGK +SV+ A + +++
Sbjct: 81 HGMPLLGKTVSVQWAKQQHDD 101
>gi|449523756|ref|XP_004168889.1| PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis
sativus]
Length = 437
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLS-RIFSHYGASSVRPCSAGRLRNCVFVDFG 65
D P + V L + DAI Q+T S R S GA V ++GR + FV FG
Sbjct: 184 DRRPDTGSDLSIFVGDLAADVTDAILQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFG 243
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
+E ++A ++NG+ + + + A+ + + +Q++
Sbjct: 244 DENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYASQAL 287
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 248 FEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 307
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 308 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 345
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q+K + L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQVTQDKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
F + A++A ++NG K L V A + +E + H Q I M
Sbjct: 340 FSSPEEATKAVSEMNGRIVATKPLYVALAQR--KEERQAHLTNQYIQRM 386
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ D + + L FS +G + SVR GR R FV++ + A +A
Sbjct: 190 FTNIYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVD 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG GK++ V RA K
Sbjct: 250 EMNGKEMNGKIIYVGRAQK 268
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCSAGRLRNCVFVD 63
FD Q++ + V L +K+L D+I + L + FS YG S+ AG+ + FV
Sbjct: 280 FDQLKQDRIQRYQGVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVMTEAGQSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F + A++A ++NG K L V A + E
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRREE 373
>gi|329956785|ref|ZP_08297354.1| hypothetical protein HMPREF9445_02226 [Bacteroides clarus YIT
12056]
gi|328523824|gb|EGF50911.1| hypothetical protein HMPREF9445_02226 [Bacteroides clarus YIT
12056]
Length = 99
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I L + L+ +F+ +G A + GR R FV+ N+ +A
Sbjct: 1 MNIYISGLSYGVNNADLTNLFAEFGEVSSAKVILDRETGRSRGFAFVEMSNDTEGQKAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+LNG+ + KV+SV A +P EE
Sbjct: 61 ELNGVEYDSKVISVSVA-RPREE 82
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+LP + + L +FS +G + V ++GR R FV+F A +A +
Sbjct: 190 FTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVV 249
Query: 76 QLNGLRFLGKVLSVERASKPNE-ENKHKHFEAQSISSMKEAAVTRNQ 121
+NG G++L RA K E +N+ K + MK+ ++R Q
Sbjct: 250 HMNGKEVSGRLLYASRAQKRVERQNELK----RKFEQMKQDRLSRYQ 292
>gi|431917885|gb|ELK17114.1| Nucleolin [Pteropus alecto]
Length = 176
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
+E +N TLLIK+LPD + Q L +F S+ G + +VDF ++ A +A
Sbjct: 51 EEDQNAKTLLIKNLPDKVTQHELKEVFEDAFQISL-VSKDGMSKRIAYVDFKSQANAERA 109
Query: 74 QMQLNGLRFLG 84
+ + G G
Sbjct: 110 REEKQGTEVGG 120
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLAS 71
E + +K+L +++ + L+++F +G ++ + G+ + FV+F N A+
Sbjct: 219 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 278
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
+A LNG F K V +A K +E + + + S+KEAA
Sbjct: 279 RAVDALNGKTFDDKEWFVGKAQKKSE--RETELKQKFEQSLKEAA 321
>gi|384250305|gb|EIE23785.1| hypothetical protein COCSUDRAFT_66096 [Coccomyxa subellipsoidea
C-169]
Length = 406
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 7 DSGPQ-NKQETENLVTLL-IKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRL----RNCV 60
D+ P+ N + T + T L + HL + +D + IFS +GA S ++ R
Sbjct: 113 DAAPKANGRATSPVTTRLHVGHLTRNVTEDHIKEIFSTFGAIKSVELSVDKVVNLPRGFA 172
Query: 61 FVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90
+V++ + A +A++ ++G + G VLSV+
Sbjct: 173 YVEYKDRDEAEKARVHMDGGQLDGNVLSVQ 202
>gi|67593714|ref|XP_665745.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656562|gb|EAL35515.1| hypothetical protein Chro.50251 [Cryptosporidium hominis]
Length = 254
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFV 62
PQ ++ + TL + L +D L R+F YG V C +G R FV
Sbjct: 60 APQIERSNDPSCTLYVCRLSLKTKEDDLRRLFEDYG--EVTDCHLVTNPLSGESRCFGFV 117
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVE--RASKP 95
GNE A++A+ L+G + L VE R +KP
Sbjct: 118 TMGNEEEAARAKDALDGKEYQDASLKVETARRAKP 152
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 13 KQETEN------LVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
KQE +N + +K+L + +D L IF +GA + V GR + FV+
Sbjct: 198 KQERDNSPGNVKFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVN 257
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F + A+ A LNG +F K V RA K +E
Sbjct: 258 FESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSE 291
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQ 72
T + +L IK+LP + Q+ L R+F H G + + P AG FV F +A +
Sbjct: 263 TSQVKSLYIKNLPKTVTQEQLKRLFEHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAMK 322
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENK 100
A G +L A KP E K
Sbjct: 323 ALKDTERYELDGHLLDCSLA-KPLAEKK 349
>gi|220910060|ref|YP_002485371.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219866671|gb|ACL47010.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 99
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L ++ Q+ L + F+ YG SV+ GRLR FV+ + A
Sbjct: 1 MSIYVGNLSYSVTQNDLIQAFTEYG--SVKSVHLPTDRETGRLRGFAFVEMSTSDEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMK 113
L+G ++G+ L V +A + + ++ +Q+ SS +
Sbjct: 59 IEALDGAEWMGRDLKVNKARPREDRSGSGNWSSQNRSSRR 98
>gi|123436029|ref|XP_001309092.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121890803|gb|EAX96162.1| hypothetical protein TVAG_270500 [Trichomonas vaginalis G3]
Length = 689
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEP 68
N E+ N T+ + LP QD + +IF YG + ++P G FV F N
Sbjct: 4 NGAESNNKTTIYVSDLPLETTQDFIHQIFRDYGNITQCELKPRKPGAKSIGAFVTFENHE 63
Query: 69 LASQAQMQLNGLRFLGKVLSVE 90
AS+A + N +R VL ++
Sbjct: 64 QASKAIEECNYMRINDSVLRIQ 85
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-----GRLRNCVFVDFGNEPLASQAQMQ 76
L +KHLPD I D L IF+ +G + C+ G + FV F + AS A
Sbjct: 291 LYVKHLPDDITDDRLREIFAPFG--KITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 77 LNG 79
LNG
Sbjct: 349 LNG 351
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLAS 71
E + +K+L +++ + L+++F +G ++ + G+ + FV+F N A+
Sbjct: 213 EKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAA 272
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
+A LNG F K V +A K +E + + + S+KEAA
Sbjct: 273 RAVDALNGKTFDDKEWFVGKAQKKSE--RETELKQKFEQSLKEAA 315
>gi|443318092|ref|ZP_21047374.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
6406]
gi|442782317|gb|ELR92375.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
6406]
Length = 108
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L ++ L+ +F YGA GR+R FV+ + + A
Sbjct: 1 MTVYVGNLSYNATEEDLTEVFKEYGAVKRVQVPVDRETGRMRGFAFVEMSEDAEENAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENK 100
L+G ++G+ L V +A +P E K
Sbjct: 61 DLDGAEWMGRTLKVNKA-RPRTERK 84
>gi|339243331|ref|XP_003377591.1| paraspeckle component 1 [Trichinella spiralis]
gi|316973596|gb|EFV57164.1| paraspeckle component 1 [Trichinella spiralis]
Length = 461
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLR 81
L I +LP ++ L +FS +G S C R + FV N P A +A+ +L+G
Sbjct: 59 LFIGNLPQDTTEEELRELFSKFGELS--ECFISR-KGFAFVRMANRPSAERAKEKLDGFV 115
Query: 82 FLGKVLSVERAS 93
F G+ L + A+
Sbjct: 116 FKGRPLRIRFAA 127
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L +FS +G + SVR GR R FV++ + A +A
Sbjct: 190 FTNVYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVN 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG GK+L V RA K
Sbjct: 250 EMNGKEINGKILYVGRAQK 268
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLAS 71
+ + + IK+ D + + L +F YG + V G+ R FV + A+
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDAN 245
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
+A +NG GK + V RA K NE
Sbjct: 246 KAVEDMNGTELNGKTVFVGRAQKKNE 271
>gi|17946488|gb|AAL49276.1| RE73487p [Drosophila melanogaster]
Length = 384
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP P++ L R+F++YG SV C + C FV N +A A LN
Sbjct: 4 TAKVFVGSLPRCKPEE-LRRLFTNYG--SVVECDV--MNRCAFVHLENTDMAEAAIAALN 58
Query: 79 GLRFLGKVLSVERASKP 95
G F G+ + VE A +P
Sbjct: 59 GTIFKGQPIVVE-AGRP 74
>gi|443682493|gb|ELT87074.1| hypothetical protein CAPTEDRAFT_222846 [Capitella teleta]
Length = 841
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSA--GRLRNCVFVDFGNEPLASQAQMQLN 78
L +K LP +D + IF YGA VR + G + +V+F +E A+QA M+ +
Sbjct: 699 LFVKGLPRTTGRDAVENIFKQYGAIKDVRLVTYRNGVSKGLAYVEFVSESEAAQAVMKAD 758
Query: 79 GLRFLGKVLSVERASKPNEE 98
GL +SV ++ P +
Sbjct: 759 GLMVGDHEISVAISNPPERQ 778
>gi|427729646|ref|YP_007075883.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
gi|427365565|gb|AFY48286.1| RRM domain-containing RNA-binding protein [Nostoc sp. PCC 7524]
Length = 99
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QDTL+ +F+ YG +V+ GRLR FV+ +E + A
Sbjct: 1 MSIYVGNLSYEVTQDTLTAVFAEYG--TVKRIQIPTDRETGRLRGFAFVEMESEAEEAAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A +P E+
Sbjct: 59 IDALDGAEWMGRDLKVNKA-RPKED 82
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLAS 71
+T + IK+ + + +D LS+IF +G + V GR + FV+F A
Sbjct: 285 QTREFTNVYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQ 344
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENK--HKHFEAQSISSMKEAAVTRNQ 121
A +NG G+ + RA K E +HFE +K+ + R Q
Sbjct: 345 NAIDNMNGKELNGRQIYAGRAQKKLERQTQLQRHFE-----QLKQNRIVRYQ 391
>gi|255731382|ref|XP_002550615.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131624|gb|EER31183.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 315
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
T+ +++LP A D L +F G ++ ++ + GR V F LA A QL
Sbjct: 235 TIFVENLPFATQNDDLYELFETVGRTTKAEIQYSADGRPSGNAVVQFEIADLAESAIQQL 294
Query: 78 NGLRFLGKVLSVERASKPNEE 98
N + G+ + + A+KP +E
Sbjct: 295 NNYTYGGRDIHISYATKPAQE 315
>gi|186681440|ref|YP_001864636.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
gi|186463892|gb|ACC79693.1| RNP-1 like RNA-binding protein [Nostoc punctiforme PCC 73102]
Length = 106
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + Q+ LS IF+ YG +V+ GR R FV+ G E + A
Sbjct: 1 MSIYVGNLSYDVTQEDLSGIFAEYG--TVKRVQVPTDRETGRPRGFAFVEMGTEAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKHK 102
L+G ++G+ L V +A KP E+ +
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKEDRGDR 86
>gi|194043009|ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
Length = 967
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV---------FVDFGNEPLAS 71
TL IK+L + ++TL +FS GA V+ CS + +N FV++ A
Sbjct: 738 TLFIKNLNFSTTEETLKGVFSKVGA--VKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQ 795
Query: 72 QAQMQLNGLRFLGKVLSV---ERASKP 95
+A QL G G L V ERA+KP
Sbjct: 796 KALKQLQGHVVDGHKLEVRISERATKP 822
>gi|333381249|ref|ZP_08472931.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830219|gb|EGK02847.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
Length = 107
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I L +I + L +FS YG A + + GR + FV+ + +A
Sbjct: 1 MNIFIAGLSYSINDNDLKDLFSEYGEITSAKVIMDKATGRSKGYGFVELADNAAGQKAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+LNG + G+ +SV A +P E
Sbjct: 61 ELNGAEYDGRTISVSEA-RPRTE 82
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV-----FVDFGNEPLASQAQMQ 76
L IK+L D+I + + +FS +G ++ C R N + FV F AS+A ++
Sbjct: 74 LYIKNLDDSIGDEKIKELFSPFG--TITSCKVMRDPNGISRGSGFVAFSTPEEASRALLE 131
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
+NG K L V A + +E++ +AQ S M+ A+
Sbjct: 132 MNGKMVASKPLYVALAQR--KEDRRARLQAQ-FSQMRPVAMA 170
>gi|363744745|ref|XP_003643117.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gallus gallus]
Length = 366
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRN 58
++P DSG +T L++ +LP ++ Q+ L +F G VR G+
Sbjct: 33 SSPIDSGNTEDSKTN----LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 88
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 89 YGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYA 122
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPL 69
++ + +K+L D + + L +FS YG + VR S G+ + FV +
Sbjct: 193 RDKATFTNVFVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDAS-GKSKGFGFVRYETHDA 251
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A + L+G GKVL V RA K E
Sbjct: 252 AQKAVLDLHGKSVDGKVLYVGRAQKKIE 279
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLAS 71
+ + + IK+ D + + L +F YG + V G+ R FV + A+
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDAN 245
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
+A +NG GK + V RA K NE
Sbjct: 246 KAVEDMNGTELNGKTVFVGRAQKKNE 271
>gi|402217527|gb|EJT97607.1| hypothetical protein DACRYDRAFT_111651 [Dacryopinax sp. DJM-731
SS1]
Length = 365
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSV------RPCSAGRLRNCVFVDFGNEPLASQAQM 75
L + +LP + TL+ +F+ G + V R R + FVD G+E +
Sbjct: 262 LFVANLPFTVTDQTLAEMFTSAGINIVSARIVRRRWPPRRSKGYGFVDVGDEAAQKKGIE 321
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISS 111
+NG +F G+ ++V+ A E+ K AQ SS
Sbjct: 322 AVNGKQFEGREVAVKVAVNTQLEDAEKEEAAQEGSS 357
>gi|67923265|ref|ZP_00516750.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
gi|67854891|gb|EAM50165.1| RNA-binding region RNP-1 (RNA recognition motif) [Crocosphaera
watsonii WH 8501]
Length = 94
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSV----RPCSAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + ++ L +F+ YG+ + +GR+R FV+ ++ +A
Sbjct: 1 MSIYVGNLSYDVNKEDLEEVFTEYGSVKRVHIPKDRESGRMRGFAFVEMDSDDQEQEAIS 60
Query: 76 QLNGLRFLGKVLSVERA 92
L+G ++G+ L V +A
Sbjct: 61 TLDGAEWMGRTLKVNKA 77
>gi|73965401|ref|XP_537585.2| PREDICTED: ELAV-like protein 1-like [Canis lupus familiaris]
Length = 326
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG F+++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFLNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEP 68
G QN+ + N T+ + +L + D L ++FS YG AG + C FV F +
Sbjct: 259 GSQNENDPNN-TTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAG--KRCGFVQFADRS 315
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKP 95
A +A LNG G+ + + P
Sbjct: 316 CAEEALRVLNGTLLGGQNVRLSWGRSP 342
>gi|443328242|ref|ZP_21056842.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
gi|442792088|gb|ELS01575.1| RRM domain-containing RNA-binding protein [Xenococcus sp. PCC 7305]
Length = 92
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L I Q+ L+ +F+ YG +V+ GR+R FV+ +E +A
Sbjct: 1 MSIYVGNLAYEINQEDLNEVFAEYG--TVKRVHIPTDRETGRVRGFAFVEMESESDEDKA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKH 101
L+G ++ + L V +A +P E N++
Sbjct: 59 IAALDGAEWMERSLKVNKA-RPRENNRN 85
>gi|428296831|ref|YP_007135137.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
gi|428233375|gb|AFY99164.1| RNP-1 like RNA-binding protein [Calothrix sp. PCC 6303]
Length = 98
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +++L+ +F+ YG +V+ GRLR FV+ G E + A
Sbjct: 1 MSVYVGNLSYEVTEESLNAVFAEYG--TVKRVQLPTDRETGRLRGFGFVEMGTEAEEAAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPKED 82
>gi|24651234|ref|NP_651755.2| CG7903, isoform A [Drosophila melanogaster]
gi|23172639|gb|AAF56982.2| CG7903, isoform A [Drosophila melanogaster]
Length = 384
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP P++ L R+F++YG SV C + C FV N +A A LN
Sbjct: 4 TAKVFVGSLPRCKPEE-LRRLFTNYG--SVVECDV--MNRCAFVHLENTDMAEAAIAALN 58
Query: 79 GLRFLGKVLSVERASKP 95
G F G+ + VE A +P
Sbjct: 59 GTIFKGQPIVVE-AGRP 74
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+ L +K+L D I +TL FS +G ++ V SAG+ R FV + + A++A +
Sbjct: 322 MNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTE 381
Query: 77 LNGLRFLGKVLSVERASK 94
+NG GK + V A +
Sbjct: 382 MNGRMIKGKPIYVALAQR 399
>gi|407410691|gb|EKF33034.1| RNA-binding protein, putative [Trypanosoma cruzi marinkellei]
Length = 469
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLA 70
E + L I+HLP + + L FS YG A+ +R G FV + A
Sbjct: 19 EMYSHANLFIRHLPRVVDEHELQMFFSPYGQILSAAVMRNIHTGENLGTAFVRYATNEQA 78
Query: 71 SQAQMQLNGLRFLGKVLSVERASK 94
A + NG G+ +SV A K
Sbjct: 79 RTALHECNGRFLHGRAISVHWAKK 102
>gi|294884876|gb|ADF47446.1| TIA1-like protein, partial [Dugesia japonica]
Length = 443
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFG 65
+D +K E N T+ I LP+++ ++ L IF +YG C +V+F
Sbjct: 10 YDFSKMSKMENRNTKTIYISCLPNSVTEEDLLSIFENYGL--CVSCELNSEECTAYVEFD 67
Query: 66 NEPLASQAQMQLNGL 80
NE A A + +NG+
Sbjct: 68 NETSARNA-LSMNGI 81
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+L D + + L +FS YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GK+L V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKILYVGRAQKKIE 279
>gi|292491403|ref|YP_003526842.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
gi|291579998|gb|ADE14455.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
Length = 91
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQ 74
+ ++ + +LP QD + +F +GA +SV+ S G+ R FV+ ++ A++A
Sbjct: 1 MTSIYVGNLPFQCSQDEIRELFEPFGAVNSVKLISDRETGKPRGFGFVEMDHD-AAAEAI 59
Query: 75 MQLNGLRFLGKVLSV----ERASKPNEENKH 101
QLNG F G+ L + ER S+P +++
Sbjct: 60 EQLNGTDFKGRPLRINEARERTSRPPRQSRR 90
>gi|195341381|ref|XP_002037288.1| GM12198 [Drosophila sechellia]
gi|194131404|gb|EDW53447.1| GM12198 [Drosophila sechellia]
Length = 383
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP P++ L R+F++YG SV C + C FV N +A A LN
Sbjct: 4 TAKVFVGSLPRCKPEE-LRRLFTNYG--SVVECDV--MNRCAFVHLENTDMAEAAIAALN 58
Query: 79 GLRFLGKVLSVERASKP 95
G F G+ + VE A +P
Sbjct: 59 GTIFKGQPIVVE-AGRP 74
>gi|442621790|ref|NP_001263093.1| CG7903, isoform B [Drosophila melanogaster]
gi|440218048|gb|AGB96472.1| CG7903, isoform B [Drosophila melanogaster]
Length = 382
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ + LP P++ L R+F++YG SV C + C FV N +A A LN
Sbjct: 4 TAKVFVGSLPRCKPEE-LRRLFTNYG--SVVECDV--MNRCAFVHLENTDMAEAAIAALN 58
Query: 79 GLRFLGKVLSVERASKP 95
G F G+ + VE A +P
Sbjct: 59 GTIFKGQPIVVE-AGRP 74
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-----GRLRNCVFVDFGNEPLASQAQMQ 76
L +KHLPD I D L IF +G + C+ G + FV F + AS A
Sbjct: 291 LYVKHLPDDITDDKLREIFEPFG--KITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 77 LNG 79
LNG
Sbjct: 349 LNG 351
>gi|78184977|ref|YP_377412.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
gi|116072453|ref|ZP_01469720.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
gi|78169271|gb|ABB26368.1| RNA-binding region RNP-1 [Synechococcus sp. CC9902]
gi|116064975|gb|EAU70734.1| RNA-binding region RNP-1 [Synechococcus sp. BL107]
Length = 95
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+T+ I +L Q+ LS +F+ YG V+ CS GR R FV+ N+ +A
Sbjct: 1 MTIYIGNLSFQAEQEHLSDLFAEYG--EVKNCSLPLDRETGRKRGFAFVEMVNDADEQKA 58
Query: 74 QMQLNGLRFLGKVLSVERAS 93
L + ++G+++ V +A+
Sbjct: 59 IDDLQDVEWMGRMIRVSKAT 78
>gi|399031232|ref|ZP_10731328.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
gi|398070499|gb|EJL61796.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
Length = 119
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQM 75
+ + + LP +I + L F YGA SV+ + GR + FV+ N+ A +A
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDEAQKAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQS 108
+LNG G+ + V + S+P E + + F S
Sbjct: 61 ELNGATVQGRAIVVNK-SEPKPEGERRSFNNNS 92
>gi|381186866|ref|ZP_09894434.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
gi|379651172|gb|EIA09739.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
Length = 120
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQM 75
+ + + LP +I + L F YGA SV+ + GR + FV+ N+ A +A
Sbjct: 1 MNIFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDEAQKAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQS 108
+LNG G+ + V + S+P E + + F S
Sbjct: 61 ELNGATVQGRAIVVNK-SEPKPEGERRSFNNNS 92
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCS--AGRLRNCVFVDFGNEPLAS 71
+ + + IK+ D + + L IF YG + SV+ + +G+ R FV + A+
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDAN 245
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
+A ++NG GK + V RA K E
Sbjct: 246 KAVEEMNGTELNGKTVFVGRAQKKME 271
>gi|307194503|gb|EFN76795.1| ELAV-like protein 2 [Harpegnathos saltator]
Length = 349
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
Q QE E+ L++ +LP ++ QD + +FS G +R +G+ FV++
Sbjct: 19 QTSQE-ESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHR 77
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A +A LNGLR K + V A +P+ E
Sbjct: 78 PEDAEKAISTLNGLRLQNKTIKVSYA-RPSSE 108
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA---GRLRNCVFVDFGNEPLASQAQMQLN 78
L +K+L I ++ L FS +G S S G R F++F N A +A LN
Sbjct: 195 LYVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLN 254
Query: 79 GLRFLGKVLSVERASKPNEENK--HKHFE 105
G + KV+ + RA K E + +H+E
Sbjct: 255 GSQLGSKVIYIARAQKKTEREEVLRRHYE 283
>gi|363744747|ref|XP_001233484.2| PREDICTED: ELAV-like protein 2 isoform 1 [Gallus gallus]
Length = 345
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRN 58
++P DSG +T L++ +LP ++ Q+ L +F G VR G+
Sbjct: 25 SSPIDSGNTEDSKTN----LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 80
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 81 YGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYA 114
>gi|366995467|ref|XP_003677497.1| hypothetical protein NCAS_0G02580 [Naumovozyma castellii CBS 4309]
gi|342303366|emb|CCC71145.1| hypothetical protein NCAS_0G02580 [Naumovozyma castellii CBS 4309]
Length = 224
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L + LP + LS+ FS +G R G R+ F++F N+ A+ AQ +
Sbjct: 96 LYVSRLPQGFHERELSKYFSQFGDLKEVRLARNKKTGNSRHYGFIEFANKDDANIAQDAM 155
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMK 113
N +G +L V K + K ++ ++ + MK
Sbjct: 156 NNYLVMGHLLQVRLLPKGAKIEKLYKYKKRAFTQMK 191
>gi|295789217|pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-GRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL K+LP + QD L +F A+ +R S G+ + +++F E A + + G
Sbjct: 95 TLLAKNLPYKVTQDELKEVFED--AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 152
Query: 80 LRFLGKVLSVERASKPNEE 98
G+ +S+ +P E
Sbjct: 153 TEIDGRSISLYYTGEPKGE 171
>gi|225461001|ref|XP_002280601.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Vitis vinifera]
Length = 417
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 4 APFDSGPQNKQETE-NLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFV 62
A F + N+ E++ N T+ + L + D L ++FS YG G+ C FV
Sbjct: 274 ASFQNTQGNQGESDPNNTTIFVGGLDSNVTDDYLRQVFSQYGELVHVKIPVGK--RCGFV 331
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
F N A QA LNG + + + + P+ +
Sbjct: 332 QFANRACAEQALAGLNGTQLGAQSIRLSWGRSPSNK 367
>gi|26344670|dbj|BAC35984.1| unnamed protein product [Mus musculus]
Length = 326
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 1 MATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRL 56
MA D ++ ++ L++ +LP + Q+ L +FS G A +R AG
Sbjct: 1 MANGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHS 60
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
FV++ A +A LNGLR K + V A +P+ E
Sbjct: 61 LGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA-RPSSE 101
>gi|388494114|gb|AFK35123.1| unknown [Medicago truncatula]
Length = 425
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIF-SHYGASSVRPCSAGRLRNCVFVDFG 65
D G N + V L + D++ +T S + S A V + GR + FV FG
Sbjct: 181 DKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFG 240
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVT 118
+E SQA Q+NG+ + + + A+ + SS EA T
Sbjct: 241 DESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQTNGTSSQSEADST 293
>gi|357457753|ref|XP_003599157.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355488205|gb|AES69408.1| Cold-inducible RNA-binding protein [Medicago truncatula]
Length = 134
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ +K L + ++ L+ FS YG A V + R + +V F E A +AQ+ +
Sbjct: 34 IFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGM 93
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NG G+VL V+ PNE+
Sbjct: 94 NGKILHGRVLYVD-MDPPNEQ 113
>gi|348504910|ref|XP_003440004.1| PREDICTED: ELAV-like protein 1-like isoform 3 [Oreochromis
niloticus]
Length = 369
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAG--RLRN---- 58
G Q ++ + L++ +LP ++ QD L +FS G A +R AG +N
Sbjct: 46 GEQMMEDEDARTNLIVNYLPQSMSQDELRSLFSSVGEVESAKLIRDKVAGNDETKNESHS 105
Query: 59 --CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV+F N A +A LNGLR K + V A
Sbjct: 106 LGYGFVNFVNPSDAERAISTLNGLRLQSKTIKVSFA 141
>gi|224078632|ref|XP_002305583.1| predicted protein [Populus trichocarpa]
gi|222848547|gb|EEE86094.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPL 69
PQN + N T+ + +L + D L +F YG AG+ C FV F +
Sbjct: 240 PQNDGDPNN-TTIFVGNLDSNVMDDHLKELFGQYGQLLHVKIPAGK--RCGFVQFADRSS 296
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKP 95
A +A LNG + G+ + + P
Sbjct: 297 AEEALKMLNGAQLSGQNIRLSWGRNP 322
>gi|384247652|gb|EIE21138.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 107
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEP 68
K++ L +++LP + + TL ++F +G V+ S+G R FV F +
Sbjct: 9 KRDCNVHANLYVRNLPKDLDEGTLQQLFQSFGPLESCRLVKEASSGISRGYGFVRFSSVS 68
Query: 69 LASQAQMQLNGLRFLGKVLSVERASK 94
A A LNG R +L V A K
Sbjct: 69 AAEAAIKALNGARLSSNILEVHHAEK 94
>gi|71652522|ref|XP_814916.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70879930|gb|EAN93065.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 469
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I+HLP + ++ L FS YG A+ +R G FV + A A +
Sbjct: 26 LFIRHLPRVVDENELRIFFSPYGQILSAAVMRNIHTGENLGTAFVRYATNEQARTALHEC 85
Query: 78 NGLRFLGKVLSVERASK 94
NG G+ +SV A K
Sbjct: 86 NGRFLHGRAISVHWAKK 102
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA-----GRLRNCVFVDFGNEPLASQAQMQ 76
L +KHLPD I D L IF +G + C+ G + FV F + AS A
Sbjct: 291 LYVKHLPDDITDDRLREIFEPFG--KITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 77 LNG 79
LNG
Sbjct: 349 LNG 351
>gi|194911931|ref|XP_001982402.1| GG12756 [Drosophila erecta]
gi|190648078|gb|EDV45371.1| GG12756 [Drosophila erecta]
Length = 466
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 8 SGPQNKQ--ETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVF 61
SG QN +E L++ +LP + +D + +FS G +R S G+ F
Sbjct: 131 SGSQNGSNGSSETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQGQSLGYGF 190
Query: 62 VDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
V++ A QA LNGLR K + V A
Sbjct: 191 VNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 221
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC-----SAGRLRN 58
A FD+ + + E L IK+L D + L +F+ +G ++ C +AG R
Sbjct: 297 AKFDAERRERMEKMAGANLYIKNLEDTVDDAKLRELFAEFG--TITSCRVMRDTAGASRG 354
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQ 107
FV F + A++A ++NG K L V A + +E++ +AQ
Sbjct: 355 SAFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQR--KEDRRLRLQAQ 401
>gi|340727255|ref|XP_003401963.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Bombus
terrestris]
Length = 139
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ I LP + + + +FS YG + +R + G+ + F+ + N+ A L
Sbjct: 36 IFIGGLPYDLTEGDVITVFSQYGEVVNINLIRDKNTGKQKGYGFLCYENQKSTVLAVDNL 95
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRN 120
NG++ LG+++ V+ + K+ + ++ KE +N
Sbjct: 96 NGIKILGRIIRVDHVANYKAPKDSKNVDEETKRLRKEGCAPKN 138
>gi|320162535|ref|YP_004175760.1| RNA-binding domain-containing protein [Anaerolinea thermophila
UNI-1]
gi|319996389|dbj|BAJ65160.1| RNA-binding region [Anaerolinea thermophila UNI-1]
Length = 105
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + + +LP + +D L F+ YG A+ ++ +G+ R FV+ N+ A A
Sbjct: 1 MNIYVGNLPFSANEDDLRSAFAAYGTVTSAAVIKDQFSGQSRGFGFVEMPNQAEAEAAIQ 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
LNG G+ L V A +P EE
Sbjct: 61 GLNGKELKGRALRVNEA-RPREE 82
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQA 73
+N + +K+ +D L +F YG + ++ S G + FV+F A +A
Sbjct: 230 KNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKA 289
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKE 114
LN + GK L V RA K NE K +EA + +++
Sbjct: 290 VEALNDKEYKGKPLYVGRAQKKNERVHELTKKYEADRLEKLQK 332
>gi|49658982|emb|CAE01482.1| HUR [Tetraodon nigroviridis]
Length = 325
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVD 63
G + K NL+ + +LP + Q+ L +FS G A +R AG FV+
Sbjct: 10 GGEEGKDAKTNLI---VNYLPQNMSQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 66
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERA 92
+ N A +A LNGLR K + V A
Sbjct: 67 YVNPSDAERAISTLNGLRLQSKNIKVSYA 95
>gi|256074908|ref|XP_002573764.1| hypothetical protein [Schistosoma mansoni]
gi|353231113|emb|CCD77531.1| hypothetical protein Smp_023270.2 [Schistosoma mansoni]
Length = 525
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVR--PCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
L+ KH P I +D GA++ + CS G L+ C F +F +E A L+
Sbjct: 8 LIFKHFPPEIAEDECVTFLKSLGATTAQYFGCS-GSLKYCAFAEFASEQHAWNIIKNLHQ 66
Query: 80 LRFLGKVLSVE 90
+ L + LSVE
Sbjct: 67 KKILDRRLSVE 77
>gi|196012894|ref|XP_002116309.1| hypothetical protein TRIADDRAFT_60275 [Trichoplax adhaerens]
gi|190581264|gb|EDV21342.1| hypothetical protein TRIADDRAFT_60275 [Trichoplax adhaerens]
Length = 456
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCV-FVDFGNEPLASQAQMQL 77
L I HLP L IF+ YG ++ V + C FV + N A A L
Sbjct: 372 LFIYHLPPEFTDYDLHNIFAPYGNVVSAKVYINKITKQSKCFGFVSYDNASSAHHAISTL 431
Query: 78 NGLRFLGKVLSVERASKPNEENKHK 102
NG+ GK L VE + HK
Sbjct: 432 NGMMVYGKKLKVEYKKPKDATKSHK 456
>gi|428221461|ref|YP_007105631.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
gi|427994801|gb|AFY73496.1| RRM domain-containing RNA-binding protein [Synechococcus sp. PCC
7502]
Length = 101
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q +S IF+ YG GR+R FV+ + A
Sbjct: 1 MSIYVGNLSYDVTQQDISNIFAEYGGVKRVQLPTDRETGRMRGFGFVEMNTDAEEEAAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP EE
Sbjct: 61 ALDGAEWMGRDLKVNKA-KPREE 82
>gi|407943922|pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
gi|407943923|pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
gi|407943924|pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
gi|407943925|pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERA 92
NGLR K + V A
Sbjct: 82 NGLRLQSKTIKVSYA 96
>gi|410078175|ref|XP_003956669.1| hypothetical protein KAFR_0C05430 [Kazachstania africana CBS 2517]
gi|372463253|emb|CCF57534.1| hypothetical protein KAFR_0C05430 [Kazachstania africana CBS 2517]
Length = 274
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 2 ATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSR--IFSHY---GASSVRPCSAGRL 56
A P ++ +E +++ TL I L + ++TL +F A VR GR
Sbjct: 175 AKDPSSDAYRDSKERDDMCTLKIMQLNENADENTLREELLFPFAPIPKAVVVRNRETGRS 234
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKP 95
R FV F +E +A +A L+G F+ +L VE SKP
Sbjct: 235 RGLAFVTFSSEEMAEKALHFLDGRGFMNLILRVE-WSKP 272
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
F + A++A ++NG K L V A + +E++ H + + M
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEDRQAHLTNEYMQRM 386
>gi|345328442|ref|XP_001514134.2| PREDICTED: RNA-binding protein 41-like [Ornithorhynchus anatinus]
Length = 411
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 54 GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90
GR+R F+ F + LA QA + +NG LGK L +E
Sbjct: 345 GRMRGQAFITFPSTELAQQALLLVNGFNLLGKTLVIE 381
>gi|341901304|gb|EGT57239.1| CBN-EXC-7 protein [Caenorhabditis brenneri]
Length = 459
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQ 72
E+ L+I +LP + Q+ + +F+ G VR G+ FV++ E A +
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVQEADALR 98
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
A NGLR K + V A N++ K + I
Sbjct: 99 AVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGI 135
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFV 62
F+ + + E+ V L +K+L D+I + L + FS YG ++ V GR + FV
Sbjct: 273 FEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFV 332
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A+ A +LNG K L V A + E H
Sbjct: 333 CFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAH 371
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFV 62
F+ + + E+ V L +K+L D+I + L + FS YG ++ V GR + FV
Sbjct: 273 FEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDDEGRSKGFGFV 332
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A+ A +LNG K L V A + E H
Sbjct: 333 CFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAH 371
>gi|123399703|ref|XP_001301526.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882717|gb|EAX88596.1| hypothetical protein TVAG_467070 [Trichomonas vaginalis G3]
Length = 321
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
T+++ H+P+ + + + IFS YG +R + + F++F + A A +Q+ G
Sbjct: 226 TIVVFHIPEQVTEQMIFSIFSKYGEIRQIRGTPSKGFQK--FIEFWDVRAAQDALVQMTG 283
Query: 80 LRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
+G +++E S P KH E + SMK+A+
Sbjct: 284 KFLMGSRITIE-FSLPGGFRKHSVMENNT-YSMKKAS 318
>gi|308464232|ref|XP_003094384.1| CRE-EXC-7 protein [Caenorhabditis remanei]
gi|308247806|gb|EFO91758.1| CRE-EXC-7 protein [Caenorhabditis remanei]
Length = 457
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQ 72
E+ L+I +LP + Q+ + +F+ G VR G+ FV++ E A +
Sbjct: 41 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVQEADALR 100
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
A NGLR K + V A N++ K + I
Sbjct: 101 AVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGI 137
>gi|123253386|ref|XP_001289047.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121859393|gb|EAX76117.1| hypothetical protein TVAG_207000 [Trichomonas vaginalis G3]
Length = 259
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
T+++ H+P+ + + + IFS YG +R + + F++F + A A +Q+ G
Sbjct: 164 TIVVFHIPEQVTEQMIFSIFSKYGEIRQIRGTPSKGFQK--FIEFWDVRAAQDALVQMTG 221
Query: 80 LRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
+G +++E S P KH E + SMK+A+
Sbjct: 222 KFLMGSRITIE-FSLPGGFRKHSVMENNTY-SMKKAS 256
>gi|31542602|ref|NP_034615.2| ELAV-like protein 1 [Mus musculus]
gi|157818153|ref|NP_001102318.1| ELAV-like protein 1 [Rattus norvegicus]
gi|354488231|ref|XP_003506274.1| PREDICTED: ELAV-like protein 1 [Cricetulus griseus]
gi|341940489|sp|P70372.2|ELAV1_MOUSE RecName: Full=ELAV-like protein 1; AltName: Full=Elav-like generic
protein; AltName: Full=Hu-antigen R; Short=HuR; AltName:
Full=MelG
gi|26348505|dbj|BAC37892.1| unnamed protein product [Mus musculus]
gi|83308037|emb|CAI77902.1| HuR RNA binding protein [Spalax judaei]
gi|148690049|gb|EDL21996.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Mus musculus]
gi|148690050|gb|EDL21997.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R), isoform CRA_a [Mus musculus]
gi|149015619|gb|EDL75000.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149015620|gb|EDL75001.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|197245826|gb|AAI68972.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Rattus norvegicus]
gi|208609536|dbj|BAG72208.1| HuR [Rattus norvegicus]
Length = 326
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + Q+ L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|194337130|ref|YP_002018924.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309607|gb|ACF44307.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 90
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I +L + +D L FS +G AS + +GR + FVD NE A +A
Sbjct: 1 MNIYIGNLAYTVTEDDLRDAFSEFGQVESASIINDKFSGRSKGFGFVDMPNESEAREAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+N G+ + V A KP EE
Sbjct: 61 SMNEKDLNGRTIKVNEA-KPREE 82
>gi|405965808|gb|EKC31162.1| STI1-like protein [Crassostrea gigas]
Length = 518
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 17 ENLVTLLIKH-LPDAIPQDTLSRIFSHYG-ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
E L L + + LPD + L +IFS YG +SVR + C FV+F + A +A
Sbjct: 348 EGLTALWVGNVLPDKVDDKKLLKIFSRYGPVTSVRTLPE---KFCAFVNFKTKEAAGKAM 404
Query: 75 MQLNGLRFLGKVLSVERASKP 95
L G G+ L ++ P
Sbjct: 405 QCLQGAECGGQKLLIKFPDNP 425
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
E + +K+L + +D L FS +G + ++ G + FV+F A A
Sbjct: 198 EKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWA 257
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENK--HKHFEAQSISSMKEAAVT 118
+NG RF K L V RA K E + + F+ + M +A V+
Sbjct: 258 AETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVS 304
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLAS 71
+ ++ + IK+ + + L+ IF+ YG + V GR + FV F + A
Sbjct: 220 KAKDYTNIYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQ 279
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFE 105
A +NG + GK + V RA K E +HFE
Sbjct: 280 AAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFE 315
>gi|26330019|dbj|BAC28748.1| unnamed protein product [Mus musculus]
Length = 326
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + Q+ L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|332709842|ref|ZP_08429799.1| RRM domain RNA-binding protein [Moorea producens 3L]
gi|332351440|gb|EGJ31023.1| RRM domain RNA-binding protein [Moorea producens 3L]
Length = 96
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ I +L + + L +F YG S V P G+ R FVD G A
Sbjct: 1 MTIYIGNLDYQVTSENLQEVFQDYGTVSKVVVPKDRETGQGRGFAFVDMGTTDQEESAIA 60
Query: 76 QLNGLRFLGKVLSVERA 92
+L+G ++G+ + V +A
Sbjct: 61 ELDGAEWMGRSMRVRKA 77
>gi|83315537|ref|XP_730836.1| ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23490683|gb|EAA22401.1| ribonucleoprotein homolog F21B7.26 - Arabidopsis thaliana, putative
[Plasmodium yoelii yoelii]
Length = 440
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFG 65
PQN + + L I LP I ++++ +FS YG+ ++ S G + C FV F
Sbjct: 104 PQNVESGVDQAKLFIGSLPKNITEESIKDMFSVYGSVEEVFIMKDNSTGLGKGCSFVKFA 163
Query: 66 NEPLASQAQMQLNGLRFL 83
+ A A LNG + L
Sbjct: 164 YKEQALYAISSLNGKKTL 181
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I H+P+ Q L + FS +G A + GR R FV + N A+ A Q+
Sbjct: 301 LFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYENIESAAAAISQM 360
Query: 78 NGLRFLGKVLSV 89
NG L K L V
Sbjct: 361 NGFMALNKKLKV 372
>gi|414079549|ref|YP_007000973.1| glycine-rich RNA-binding protein [Anabaena sp. 90]
gi|413972828|gb|AFW96916.1| glycine-rich RNA-binding protein [Anabaena sp. 90]
Length = 99
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + ++ L R+F+ YG +V+ GR+R FV+ ++ A
Sbjct: 1 MSIYVGNLSYQVAEEDLKRVFAEYG--TVKKAQLPIDRETGRVRGFGFVEMSSDAEEQAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNE 97
L+G ++G+ L V +A KP E
Sbjct: 59 IAALDGSEWMGRSLKVNKA-KPRE 81
>gi|87301823|ref|ZP_01084657.1| putative RNA-binding protein (RRM domain) [Synechococcus sp. WH
5701]
gi|87283391|gb|EAQ75346.1| putative RNA-binding protein (RRM domain) [Synechococcus sp. WH
5701]
Length = 143
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGAS----SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
V L + +LP + L+ +F+ G +V+ G R F + +E LA
Sbjct: 3 VRLYVGNLPQSFDDKELTALFTAVGEGVRFKTVQDRETGACRGFGFANVDDEKLADAVIE 62
Query: 76 QLNGLRFLGKVLSVERASK 94
QLNG F G L +ER+ +
Sbjct: 63 QLNGRDFGGNSLRIERSER 81
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + + L IFS YG + SV+ ++G+ + FV + A
Sbjct: 184 RDRATFTNVFVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 243
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 244 QKAVLDLHGKSIDGKVLYVGRAQKKIE 270
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNC 59
PF Q + + +K+LP + D LS++ + +G ++ V G +
Sbjct: 184 VGPFQKRADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGF 243
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F++F + A++ LN GKVL RA K E
Sbjct: 244 GFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQKKTE 281
>gi|297632376|ref|NP_001172077.1| ELAV-like protein 1 [Oryctolagus cuniculus]
gi|296399062|gb|ADH10369.1| embryonic lethal abnormal vision-like 1 protein [Oryctolagus
cuniculus]
Length = 326
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + Q+ L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAEKAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|449666884|ref|XP_002155289.2| PREDICTED: uncharacterized protein LOC100208918 [Hydra
magnipapillata]
Length = 449
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHY---------GASSVRPCSAGRLRNCVFVDFGNEPLASQ 72
L IK+L + D L IF+ + +R GR++ FV F NE +A +
Sbjct: 365 LYIKNLSKQVQTDDLLFIFNRFIRHCSEEEKALLDIRLMQEGRMKGQAFVTFPNETIAEK 424
Query: 73 AQMQLNGLRFLGKVLSVE 90
+ Q +G LGK + V+
Sbjct: 425 SLKQTHGYILLGKPMVVQ 442
>gi|344247291|gb|EGW03395.1| ELAV-like protein 1 [Cricetulus griseus]
Length = 335
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + Q+ L +FS G A +R AG FV++ A +A L
Sbjct: 14 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 73
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 74 NGLRLQSKTIKVSYA-RPSSE 93
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFV 62
F+ + + E+ V L +K+L D+I + L + FS YG ++ V GR + FV
Sbjct: 273 FEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFV 332
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A+ A +LNG K L V A + E H
Sbjct: 333 CFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAH 371
>gi|168037994|ref|XP_001771487.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677214|gb|EDQ63687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 774
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L + +LP ++ + L+R+F+ +GA +R G + FV F + A+ A
Sbjct: 466 LYVGYLPSSVDDEGLARLFAPFGAVEHAKVIRDRLTGASKGYGFVKFSDPSSATAAVTHR 525
Query: 78 NGLRFLGKVLSVERA 92
NG R G+VL+V A
Sbjct: 526 NGYRLEGRVLAVRVA 540
>gi|26354232|dbj|BAC40744.1| unnamed protein product [Mus musculus]
Length = 305
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + Q+ L +FS G A +R AG FV++ A +A L
Sbjct: 1 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 60
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 61 NGLRLQSKTIKVSYA-RPSSE 80
>gi|417404448|gb|JAA48976.1| Putative nucleolar protein fibrillarin nop77 rrm superfamily
[Desmodus rotundus]
Length = 763
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L+I++L +D L IF+ YGA ++ G++R FV F N A +A +N
Sbjct: 116 LIIRNLSFKCSEDDLKTIFAQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMN 175
Query: 79 GLRFLGKVLSVE------------RASKPNEENK 100
G+ ++V+ AS P EEN+
Sbjct: 176 MKEIKGRTIAVDWAVAKDKYKNTQSASAPGEENR 209
>gi|348528531|ref|XP_003451770.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Oreochromis niloticus]
Length = 948
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLN 78
+ I LP + ++ L+ I ++G VR + +G+ + +V+F +E ASQA ++L+
Sbjct: 786 IFISGLPFSCTKEQLAEICKNHGTVKEVRLVTYRSGKPKGLAYVEFADETQASQAVLKLD 845
Query: 79 GLRFLGKVLSVERASKP 95
G+ G +SV ++ P
Sbjct: 846 GIEVEGNKISVAISNPP 862
>gi|223940412|ref|ZP_03632265.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223890907|gb|EEF57415.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 118
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L + +LP + ++ L FS G + ++ + GR R F++ G++ A A Q
Sbjct: 5 LFVGNLPFSTTENDLQDHFSGAGTVIAVNIMQDRATGRSRGFAFIEMGSQAEADAAVAQY 64
Query: 78 NGLRFLGKVLSVERASKPNEE 98
+G F G+ L+V A +P EE
Sbjct: 65 HGKEFQGRALTVNEA-RPREE 84
>gi|427416258|ref|ZP_18906441.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
gi|425758971|gb|EKU99823.1| RRM domain-containing RNA-binding protein [Leptolyngbya sp. PCC
7375]
Length = 81
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + QD L++ F+ YG S+ P GR R FVD E + A
Sbjct: 1 MTIYVGNLSFDVTQDDLNQTFAEYGTVKSTHLPTDRETGRKRGFAFVDMETEAEETAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKP 95
L+G ++G+ L V +A KP
Sbjct: 61 ALDGAEWMGRNLKVNKA-KP 79
>gi|221056352|ref|XP_002259314.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|193809385|emb|CAQ40087.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 156
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----------ASSVRPCSAGRLRNCVFVDFGNEPLAS 71
L + +L + +D L IF ++G +V + C + F NE A
Sbjct: 6 LYVHNLTKNVSEDHLKEIFMNFGNLKDIHISVDEENVSGTNGEEKFICAKIKFENEKDAK 65
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENKHKH 103
A+ +NG + GK +S++ + + KHKH
Sbjct: 66 AAKEHMNGGQIDGKTVSIKYEHEGKSKGKHKH 97
>gi|154338656|ref|XP_001565550.1| RNA-binding protein, putative, UPB1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062602|emb|CAM39044.1| RNA-binding protein, putative, UPB1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 169
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR----LRNCVFVDFGNEPLA 70
E E L L++ ++P + + L ++F YG R R FV + + A
Sbjct: 24 EPEALRNLMVNYIPTTVDEMQLRQLFERYGPIETVKIVCDRETRQSRGYGFVKYCSAASA 83
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNEENK 100
QA +LNG L K L V A+ N+ +
Sbjct: 84 QQAVNELNGFNILNKRLKVALAASGNQRQR 113
>gi|1655901|gb|AAB17967.1| elav G homolog [Mus musculus]
Length = 326
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + Q+ L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|347535511|ref|YP_004842936.1| putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
gi|345528669|emb|CCB68699.1| Putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
Length = 117
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQM 75
+ + + LP +I + L F YGA SV+ + GR + FV+ N+ A +A
Sbjct: 1 MNIFVGSLPFSIEEADLKESFEAYGAVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHF 104
+LNG G+ + V + S+P E + + F
Sbjct: 61 ELNGATVQGRAIVVNK-SEPKPEGERRSF 88
>gi|320586919|gb|EFW99582.1| glycine-rich RNA-binding protein [Grosmannia clavigera kw1407]
Length = 462
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N+ L I L + TL + F +G A V+ GR R FV + NE A A
Sbjct: 281 NMAKLFIGGLAWHTEEGTLRQKFEEFGPVEEAVVVKDRDTGRSRGFGFVRYANEADAETA 340
Query: 74 QMQLNGLRFLGKVLSVERAS 93
+N + F G+ + V+RAS
Sbjct: 341 IASMNNIEFDGRTIRVDRAS 360
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 49 FEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGFGFVC 108
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 109 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 146
>gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding protein [Triticum aestivum]
Length = 167
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 23 LIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ L A + L + FS YG A + GR R FV FG+E QA ++N
Sbjct: 9 FVGGLAWATDDNNLQQAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMN 68
Query: 79 GLRFLGKVLSVERA 92
G G+ ++V A
Sbjct: 69 GKELDGRNITVNEA 82
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + + L IFS YG + SV+ ++G+ + FV + A
Sbjct: 193 KDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSINGKVLYVGRAQKKIE 279
>gi|302690898|ref|XP_003035128.1| hypothetical protein SCHCODRAFT_65804 [Schizophyllum commune H4-8]
gi|300108824|gb|EFJ00226.1| hypothetical protein SCHCODRAFT_65804 [Schizophyllum commune H4-8]
Length = 1161
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 1 MATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRL---R 57
+AT P +G +++ ++ L I +P T+ +FS YG P + R+ +
Sbjct: 431 VATTPGMAGMESQLQSTPTRALWIGSIPSTTTPATILSVFSPYG-----PIESARVLTHK 485
Query: 58 NCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS------KPNEENKHKHFEAQSISS 111
NC FV+F A +A+ LNG LG + R K E ++ A S++
Sbjct: 486 NCGFVNFERLDDAVRARKALNGRDVLGSDVGAIRIGFAKVPVKNGAEGGEENAPATSVTG 545
Query: 112 MKEAAV 117
+ + +V
Sbjct: 546 VGDLSV 551
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAY 377
>gi|407850123|gb|EKG04635.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 469
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I+HLP + ++ L FS YG A+ +R G FV + A A +
Sbjct: 26 LFIRHLPRVVDENELRIFFSPYGQILSAAVMRNIHTGENLGTAFVRYATNEQARTALNEC 85
Query: 78 NGLRFLGKVLSVERASK 94
NG G+ +SV A K
Sbjct: 86 NGRFLHGRAISVHWAKK 102
>gi|365122662|ref|ZP_09339562.1| hypothetical protein HMPREF1033_02908 [Tannerella sp.
6_1_58FAA_CT1]
gi|363642168|gb|EHL81535.1| hypothetical protein HMPREF1033_02908 [Tannerella sp.
6_1_58FAA_CT1]
Length = 81
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I +L + + L ++ YGA ++ G+ + F++ N+ A QA
Sbjct: 1 MNIYIGNLNYRVKEADLQQVIEEYGAVESVKIIKDRETGKSKGFAFIEMNNDAQAKQAIE 60
Query: 76 QLNGLRFLGKVLSVERA 92
+LNG F G+ + V+ A
Sbjct: 61 ELNGSEFEGRTMIVKEA 77
>gi|166796147|gb|AAI59019.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
gi|166796532|gb|AAI59007.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
Length = 269
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPL 69
Q+ ++ L I LP + + + +FS YG + VR S+GR R F+ F ++
Sbjct: 30 QDYKDSAWLFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKSSGRSRGFCFLCFEDQRS 89
Query: 70 ASQAQMQLNGLRFLGKVLSVE 90
A LNG++ G+ + V+
Sbjct: 90 TVLAVDNLNGIKVKGRTIRVD 110
>gi|71010968|ref|XP_758439.1| hypothetical protein UM02292.1 [Ustilago maydis 521]
gi|46097994|gb|EAK83227.1| hypothetical protein UM02292.1 [Ustilago maydis 521]
Length = 1244
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC--SAGRLRNCVFVDFGNE 67
Q EN L + I ++ L F YG VR + G LR FVDF ++
Sbjct: 965 QRTDAQENAKELFVSGFARNITEEELRVYFESYGTVKGVRLLRNAEGALRGIGFVDFESQ 1024
Query: 68 PLASQAQMQLNGLRFLGKVLSV 89
A +A +LN ++ GK +SV
Sbjct: 1025 LEAQRAMRELNSTKWRGKTISV 1046
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 14 QETENLVTLLIKHL-PDAIPQDTLSRIFSHYG--ASSVRPCSAGRL-RNCVFVDFGNEPL 69
+ET + K+L P ++ + +FS YG S P + + FV+F
Sbjct: 253 EETHIFTNVYTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPEC 312
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNE 97
A++A +LNG F GK L V RA K E
Sbjct: 313 AAKAVEELNGRDFEGKSLYVGRAQKKAE 340
>gi|62858501|ref|NP_001016941.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
gi|89268233|emb|CAJ83312.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
Length = 269
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPL 69
Q+ ++ L I LP + + + +FS YG + VR S+GR R F+ F ++
Sbjct: 30 QDYKDSAWLFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKSSGRSRGFCFLCFEDQRS 89
Query: 70 ASQAQMQLNGLRFLGKVLSVE 90
A LNG++ G+ + V+
Sbjct: 90 TVLAVDNLNGIKVKGRTIRVD 110
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNE 67
Q +++ + +K+L ++ D L +F +G ++ V S G+ + FV+F N
Sbjct: 171 QEREQNGKFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENP 230
Query: 68 PLASQAQMQLNGLRFLGKVLSVERASKPNE 97
A++A + LNG + K V RA K +E
Sbjct: 231 DEAAKAVVGLNGKKIEDKEWYVGRAQKKSE 260
>gi|209878013|ref|XP_002140448.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556054|gb|EEA06099.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 546
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
V L + LP I ++ +S +FS YG + +R G R C FV + + A
Sbjct: 210 VKLFVGALPKNITEEEISDVFSPYGQINEIFIMREIHTGFCRGCAFVKYAFKEQGLYAIA 269
Query: 76 QLNGLRFLGKV---LSVERASKPNEEN 99
L+G LG V L V AS+ + N
Sbjct: 270 SLHGAATLGDVNRPLEVRFASRSSNAN 296
>gi|156101397|ref|XP_001616392.1| poly(A)-binding protein [Plasmodium vivax Sal-1]
gi|148805266|gb|EDL46665.1| poly(A)-binding protein, putative [Plasmodium vivax]
Length = 392
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
S +K++ + T+ + +LP+ L R FSHYG ++++ + G+ R F++F
Sbjct: 197 SNENSKKKIKPGCTIFVFYLPNDWSDKDLKRHFSHYGNILGATIKRETNGKSRGYGFINF 256
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSV 89
N+ A A +NG K L V
Sbjct: 257 ENQQSAINAVAGMNGFNAGNKYLKV 281
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVD 63
D + + + + IK+ + + L +FS YG + V S+G+ + FV
Sbjct: 235 DREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVS 294
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F + A +A ++NG G+++ V RA K E
Sbjct: 295 FDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 328
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D + + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
F + A++A ++NG K L V A + +E + H +Q + M
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAHLTSQYMQRM 386
>gi|390480085|ref|XP_002807948.2| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 41 [Callithrix
jacchus]
Length = 437
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHY----GASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L +K+L + + L +F+ + G + GR+R F+ F N+ +A QA +
Sbjct: 335 LYLKNLSPRVTERDLVSLFARFQEKKGPAIQFRMMTGRMRGQAFITFPNKEVAWQALHLV 394
Query: 78 NGLRFLGKVLSVE 90
NG + G++L +E
Sbjct: 395 NGYKLRGRILVIE 407
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K+L L +FS YG +S + G+ + FV+F N A +A
Sbjct: 230 NFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAV 289
Query: 75 MQLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSISSM 112
+LN G+ + V RA K E E + +EA + +
Sbjct: 290 DELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKLEKL 329
>gi|220906552|ref|YP_002481863.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
gi|219863163|gb|ACL43502.1| RNP-1 like RNA-binding protein [Cyanothece sp. PCC 7425]
Length = 101
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVR-PCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ I +L + QD L ++F YG SV P GR+R FV+ N A
Sbjct: 1 MSIYIGNLSYTVTQDDLIQVFGEYGTVKSVHLPTDRETGRMRGFAFVEMENNNEEEAAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 61 ALDGAEWMGRDLKVNKA-KPRED 82
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPC-----SAGRLRNCVFVDFGNEPLASQAQMQ 76
L +K++P L IF +G S+ C S G R FV + A +A
Sbjct: 138 LFVKNIPKEYTTKKLYEIFKDFG--SIASCKVSVDSNGESRGYGFVQYETVESADKAIAD 195
Query: 77 LNGLRFLGKVLSVERASKPNEENKH 101
L +F GK LS+ R + + KH
Sbjct: 196 LRDEKFEGKTLSISRFDRSLRDQKH 220
>gi|21667634|gb|AAM74138.1|AF497746_1 U-rich RNA-binding protein UBP-2 [Trypanosoma cruzi]
Length = 166
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR----LRNCVFVDFGNEPLA 70
E + L L++ ++P + + L ++F YG A R R FV F + A
Sbjct: 24 EPDLLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVADRETRQSRGYGFVKFQSGSSA 83
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
QA LNG L K L V A+ ++ N++
Sbjct: 84 QQAIAGLNGFNILNKRLKVALAASGHQRNRN 114
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAY 377
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q +Q V L +K+L D+I D L +FS YG S+ + + FV
Sbjct: 280 FEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLG-KVLSVERASKPNE 97
F + A++A ++NG R +G K L V A + E
Sbjct: 340 FSSPEEATKAVTEMNG-RIVGTKPLYVALAQRKEE 373
>gi|145538427|ref|XP_001454919.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422696|emb|CAK87522.1| unnamed protein product [Paramecium tetraurelia]
Length = 656
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA---GRLRNCVFVDFGNEPL 69
KQE E LLIK+LP L R+ YG G +R F +F N
Sbjct: 571 KQEIEPTNKLLIKNLPFEANAQELRRLVKQYGELKKLRLPKKLDGSIRGFAFAEFLNNEE 630
Query: 70 ASQAQMQLNGLRFLGKVLSVE 90
A A L F G+ L +E
Sbjct: 631 AQNAAESLQSTHFYGRRLVIE 651
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
V L +K+L D I + L + FS +G S+ GR + FV F + A++A ++
Sbjct: 304 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEM 363
Query: 78 NGLRFLGKVLSVERASKPNEENKH 101
NG K L V A + E H
Sbjct: 364 NGRIVATKPLYVALAQRKEERQAH 387
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFV 62
F+ + + E+ V L +K+L D+I + L + FS YG ++ V GR + FV
Sbjct: 273 FEELKKKRHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGRSKGFGFV 332
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A+ A +LNG K L V A + E H
Sbjct: 333 CFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAH 371
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
F + A++A ++NG K L V A + +E + + + + M NQ
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAYLTNEYMQRMASVRAVPNQ 395
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAY 377
>gi|326427500|gb|EGD73070.1| hypothetical protein PTSG_12213 [Salpingoeca sp. ATCC 50818]
Length = 1010
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC-----SAGRLRNCVFVDFGNEPLASQ 72
++ TL +++L ++ + L +FS G VR C G R +V FG A +
Sbjct: 22 SVATLFVRNLAFSVTAEDLENVFSDIG--PVRQCFIVKTPQGGSRGFGYVLFGMREDAME 79
Query: 73 AQMQLNGLRFLGKVLSVERASK 94
AQ QL+G + G+ +SV+ A +
Sbjct: 80 AQKQLDGHKLHGRPMSVQFARR 101
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + + L IFS YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSINGKVLYVGRAQKKIE 279
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCS--AGRLRNCVFVDFGNEPLAS 71
+ + + IK+ D + + L +FS YG + SV+ + +G+ + FV F A+
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDAN 245
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
QA +NG GK++ V RA K E + FE +K+ ++R Q
Sbjct: 246 QAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFE-----QLKQERISRYQ 292
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
F + A++A ++NG K L V A + +E + + + + M NQ
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAYLTNEYMQRMASVRAVPNQ 395
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPL 69
+ + + IK+ + + L +FS YG + V S+G+ + FV F +
Sbjct: 240 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 299
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G+++ V RA K E
Sbjct: 300 AKKAVEEMNGRDINGQLIFVGRAQKKVE 327
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L +K+L D+I +TL + FS YG ++ V G + FV F + AS+A + N
Sbjct: 320 LYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETN 379
Query: 79 GLRFLGKVLSVERASK 94
GL GK + V A +
Sbjct: 380 GLMINGKPIYVAMAQR 395
>gi|50305767|ref|XP_452844.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641977|emb|CAH01695.1| KLLA0C14388p [Kluyveromyces lactis]
Length = 203
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRP----CSAGRLRN 58
T FD G + L +K+L ++I LS IF +G +P G LR
Sbjct: 88 TTDFDVGAK----------LFVKNLDESIDVPQLSNIFKIFGKLLRKPEVFYLQNGTLR- 136
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKH 103
C +V F + +A QLN K++ ++ A K + + KH
Sbjct: 137 CAYVWFTTFKHSDEALQQLNETNLANKLIYIDYAYKDDMQKTAKH 181
>gi|375149693|ref|YP_005012134.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361063739|gb|AEW02731.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 112
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS---AGRLRNCVFVDFGNEPLASQAQM 75
+ + + +L + D L F+ YG SS R + G+ R FV+ N+ A +A
Sbjct: 1 MNIYVSNLSFNVTDDDLEGFFAEYGEVSSARVITDKFTGKSRGFGFVEMPNDEAAKKAIT 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
+L+G R G+ + V A +P EE
Sbjct: 61 ELDGGRVEGREIKVAEA-RPREE 82
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAY 377
>gi|349581469|dbj|GAA26627.1| K7_Hsh49p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 213
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRP----CSAGRLRNCVFVDFGNEPLASQAQ 74
+ L IK++ D+I D L +IF+ +G P S G+L+ C +V F + A A
Sbjct: 107 IAKLFIKNVADSIDSDQLVKIFNKFGKLIREPEIFYLSNGKLK-CAYVYFEDFEKADLAI 165
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKH 103
LN ++V+ A K N + K+
Sbjct: 166 KSLNNQLVANNRITVDYAFKENGKGNAKY 194
>gi|193211762|ref|YP_001997715.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193085239|gb|ACF10515.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 90
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I +LP ++ +D L FS +G A+ + +GR + FVD N+ A +A
Sbjct: 1 MNIYIGNLPYSVSEDDLRDAFSEFGQVHSANIITDKFSGRSKGFGFVDMPNDGEAREAID 60
Query: 76 QLNGLRFLGKVLSVERA 92
+N F G+ + V A
Sbjct: 61 AMNDKDFKGRTIKVNEA 77
>gi|157129340|ref|XP_001655377.1| RNA-binding protein, putative [Aedes aegypti]
gi|108882112|gb|EAT46337.1| AAEL002461-PA [Aedes aegypti]
Length = 138
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ + LP + + L +FS YG + VR G+ + F+ F ++ +
Sbjct: 36 IFVGGLPSELTEGDLLAVFSQYGEIVNINLVRDKKTGKSKGFSFICFEDQRSTVLTVDNM 95
Query: 78 NGLRFLGKVLSVERAS--------KPNEENKHKHFEA 106
NG++ LG+ L V+ S K +EE K + E
Sbjct: 96 NGIKLLGRTLRVDHVSDYKPPKDDKADEETKRLYMEG 132
>gi|71667167|ref|XP_820535.1| U-rich RNA-binding protein UBP-2 [Trypanosoma cruzi strain CL
Brener]
gi|70885884|gb|EAN98684.1| U-rich RNA-binding protein UBP-2 [Trypanosoma cruzi]
Length = 166
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR----LRNCVFVDFGNEPLA 70
E + L L++ ++P + + L ++F YG A R R FV F + A
Sbjct: 24 EPDLLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVADRETRQSRGYGFVKFQSGSSA 83
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
QA LNG L K L V A+ ++ N++
Sbjct: 84 QQAIAGLNGFNILNKRLKVALAASGHQRNRN 114
>gi|428173494|gb|EKX42396.1| hypothetical protein GUITHDRAFT_74010 [Guillardia theta CCMP2712]
Length = 629
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 1 MATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPC------SA 53
M FD G EN L + +L I ++ L + F YG +SV+
Sbjct: 157 MPQGSFDDG------DENTTNLYVGNLHPQISEEMLMKEFGKYGPIASVKIMWPRTDEEK 210
Query: 54 GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89
R RNC FV+ + A A+ LNG F G + +
Sbjct: 211 SRQRNCGFVNMMDRKSAEAAKDSLNGKEFFGLEMKI 246
>gi|340506470|gb|EGR32595.1| hypothetical protein IMG5_076250 [Ichthyophthirius multifiliis]
Length = 242
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 2 ATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLR 57
A P ++ QN T+ + HLP + ++ L FS YG R R +
Sbjct: 6 AKVPLENTAQN-------CTIYVGHLPHGLLEEELKTYFSQYGEIQNIKVARSKKTARSK 58
Query: 58 NCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94
F+ + + +A+ A +NG GKVL V K
Sbjct: 59 GYGFIQYLHPEVAAIASKTVNGHMVSGKVLQVHVLKK 95
>gi|332029758|gb|EGI69627.1| ELAV-like protein 2 [Acromyrmex echinatior]
Length = 359
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
Q QE E+ L++ +LP ++ QD + +FS G +R +G+ FV++
Sbjct: 20 QTSQE-ESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHR 78
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A +A LNGLR K + V A +P+ E
Sbjct: 79 PEDAEKAINTLNGLRLQNKTIKVSYA-RPSSE 109
>gi|301619753|ref|XP_002939264.1| PREDICTED: hypothetical protein LOC100497806 [Xenopus (Silurana)
tropicalis]
Length = 280
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPL 69
Q+ ++ L I LP + + + +FS YG + VR S+GR R F+ F ++
Sbjct: 41 QDYKDSAWLFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKSSGRSRGFCFLCFEDQRS 100
Query: 70 ASQAQMQLNGLRFLGKVLSVE 90
A LNG++ G+ + V+
Sbjct: 101 TVLAVDNLNGIKVKGRTIRVD 121
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
F + A++A ++NG K L V A + +E + + + + M NQ
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAYLTNEYMQRMASVRAVPNQ 395
>gi|307168947|gb|EFN61833.1| ELAV-like protein 4 [Camponotus floridanus]
Length = 466
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
Q QE E+ L++ +LP ++ QD + +FS G +R +G+ FV++
Sbjct: 20 QTSQE-ESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHR 78
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A +A LNGLR K + V A +P+ E
Sbjct: 79 PEDAEKAINTLNGLRLQNKTIKVSYA-RPSSE 109
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + + L IFS YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSINGKVLYVGRAQKKIE 279
>gi|17532863|ref|NP_496057.1| Protein EXC-7 [Caenorhabditis elegans]
gi|3876753|emb|CAA85327.1| Protein EXC-7 [Caenorhabditis elegans]
Length = 456
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQ 72
E+ L+I +LP + Q+ + +F+ G VR G+ FV++ E A +
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 98
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
A NGLR K + V A N++ K + I
Sbjct: 99 AVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGI 135
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEP 68
N+ E L +K+L D++ + L +FS YG +S V G R FV + N
Sbjct: 43 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPE 102
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEA 106
A +A ++NG K L + A + +E++ H +A
Sbjct: 103 EALRALSEMNGKMIGRKPLYIALAQR--KEDRRAHLQA 138
>gi|30794154|ref|NP_083038.1| probable RNA-binding protein 19 [Mus musculus]
gi|73621449|sp|Q8R3C6.1|RBM19_MOUSE RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
gi|19343654|gb|AAH25619.1| RNA binding motif protein 19 [Mus musculus]
gi|21707580|gb|AAH34010.1| RNA binding motif protein 19 [Mus musculus]
gi|148687830|gb|EDL19777.1| RNA binding motif protein 19 [Mus musculus]
Length = 952
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV---------FVDFGNEPLAS 71
TL IK+L + ++TL +FS GA ++ C+ + +N FV++ A
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 780
Query: 72 QAQMQLNGLRFLGKVLSV---ERASKP 95
+A QL G G L V ERA+KP
Sbjct: 781 KALKQLQGHTVDGHKLEVRISERATKP 807
>gi|342884659|gb|EGU84864.1| hypothetical protein FOXB_04645 [Fusarium oxysporum Fo5176]
Length = 736
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 13 KQETENLVTLLIKHLPDAIP-QDTLSRIFSHYGASSVR--PCSAGRLRNCVFVDFGNEPL 69
K+E + L++++LP +I + LS +F +G P G+L+ FV P
Sbjct: 138 KEELQRPPKLIVRNLPWSIKTSEQLSHLFRSFGKVKFADLPQDKGKLKGFGFVTLRGRPN 197
Query: 70 ASQAQMQLNGLRFLGKVLSVERA 92
A +A +NG G+ L+V+ A
Sbjct: 198 AERALEAINGKEIDGRTLAVDWA 220
>gi|401424247|ref|XP_003876609.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492852|emb|CBZ28130.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 495
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS-AGRLRNCVFVDFGNEP 68
Q +Q+ T+ + HLP +PQ L + + G + VR C+ AG FV+
Sbjct: 369 QPRQDEMKRRTIYVSHLPGLLPQSMLLELLTTAGPVNKVRICAGAGYCTLFAFVEMRTLE 428
Query: 69 LASQAQMQLNGLRFLGKVLSVERA 92
A +A M +NGL+ +G + V+ A
Sbjct: 429 GAQRA-MCMNGLQLMGFAIRVQTA 451
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLWKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAY 377
>gi|405974565|gb|EKC39200.1| RNA-binding protein 4 [Crassostrea gigas]
Length = 226
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG 79
L I +LP+ + L ++F YG V C +RN F+ F N A AQ L+G
Sbjct: 7 TKLYIGNLPETCRKADLQKMFEAYG--KVIECDI--VRNYCFIHFENPNEAKMAQANLDG 62
Query: 80 LRFLGKVLSVE 90
+ F G L VE
Sbjct: 63 VDFEGVKLKVE 73
>gi|322798581|gb|EFZ20185.1| hypothetical protein SINV_01390 [Solenopsis invicta]
Length = 523
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
Q QE E+ L++ +LP ++ QD + +FS G +R +G+ FV++
Sbjct: 19 QTSQE-ESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLSGQSLGYGFVNYHR 77
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A +A LNGLR K + V A +P+ E
Sbjct: 78 PEDAEKAINTLNGLRLQNKTIKVSYA-RPSSE 108
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVD 63
D + + + + IK+ D + + L +FS YG + V S G+ R FV
Sbjct: 177 DREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVS 236
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
F + A +A ++NG G+ + V RA K E
Sbjct: 237 FDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVE 270
>gi|305855162|ref|NP_001182263.1| ELAV-like protein 1 [Sus scrofa]
gi|285818484|gb|ADC38915.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 [Sus
scrofa]
gi|456753432|gb|JAA74168.1| ELAV-like 1 (Hu antigen R) [Sus scrofa]
Length = 326
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + Q+ L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>gi|268529184|ref|XP_002629718.1| C. briggsae CBR-EXC-7 protein [Caenorhabditis briggsae]
Length = 456
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQ 72
E+ L+I +LP + Q+ + +F+ G VR G+ FV++ E A +
Sbjct: 42 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 101
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
A NGLR K + V A N++ K + I
Sbjct: 102 AVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGI 138
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + IK++ + ++ FS +G +S++ + G+ R FV++ A++
Sbjct: 247 NYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCV 306
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
++NG + G+ L V RA K + EE K +EA
Sbjct: 307 EEMNGKEWRGQELYVGRAQKKHEREEELRKSYEA 340
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPL 69
+ + + IK+ + + L +FS YG + V S+G+ + FV F +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G+++ V RA K E
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVE 328
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ D + + L IFS +G + V + GR + FV+F A +A
Sbjct: 190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVA 249
Query: 76 QLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
+NG G+++ V RA K E + FE MK+ V+R Q
Sbjct: 250 DMNGKEINGRMVYVGRAQKRLERQSELKRKFE-----QMKQERVSRYQ 292
>gi|356555656|ref|XP_003546146.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 411
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 9 GPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEP 68
G QN+ + N T+ + +L + D L ++FS YG AG + C FV F +
Sbjct: 260 GSQNENDPNN-TTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAG--KRCGFVQFADRS 316
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A +A LNG G+ + + P+ +
Sbjct: 317 CAEEALRVLNGTLLGGQNVRLSWGRSPSNK 346
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L +K+L D+I +TL + FS YG ++ V G + FV F + AS+A + N
Sbjct: 321 LYVKNLDDSIDDETLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETN 380
Query: 79 GLRFLGKVLSVERASK 94
GL GK + V A +
Sbjct: 381 GLMINGKPIYVAMAQR 396
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + + L IFS YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GK L V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKALYVGRAQKKIE 279
>gi|432108407|gb|ELK33158.1| RNA-binding protein 41, partial [Myotis davidii]
Length = 239
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHY----GASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + G GR+R F+ F N+ +A QA
Sbjct: 136 VLYLKNLSPRVTERDLVSLFARFQEKKGPLIQFRMMTGRMRGQAFITFPNKDIAWQAFHL 195
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSIS 110
+NG + GK+L +E +NK + + QS S
Sbjct: 196 INGYKLHGKILVIEFG-----KNKKQQSDLQSAS 224
>gi|308505322|ref|XP_003114844.1| hypothetical protein CRE_28621 [Caenorhabditis remanei]
gi|308259026|gb|EFP02979.1| hypothetical protein CRE_28621 [Caenorhabditis remanei]
Length = 85
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC---SAGRLRNCVFVDFGNEPLASQAQMQ 76
++ + + P ++ + FS+ G ++VR GR R FV+F +E A +A +
Sbjct: 7 SVYVGNAPFQTSEEEIGNFFSNVGNVTNVRIVYDRETGRPRGFAFVEFADEAGAQKAVQE 66
Query: 77 LNGLRFLGKVLSVERAS 93
LNG F G+ L V A+
Sbjct: 67 LNGAEFNGRQLRVNLAN 83
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L +K+L I ++ L FS +G + ++ G R FV+F N A A ++N
Sbjct: 194 LYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMN 253
Query: 79 GLRFLGKVLSVERASKPNEENK--HKHFE 105
G KVL V RA K E + + FE
Sbjct: 254 GTELGSKVLYVGRAQKRAEREQILRRQFE 282
>gi|154338654|ref|XP_001565549.1| RNA-binding protein, putative, UPB2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062601|emb|CAM39043.1| RNA-binding protein, putative, UPB2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 168
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR----LRNCVFVDFGNEPLA 70
E E L L++ ++P + + L ++F YG R R FV + + A
Sbjct: 23 EPEALRNLMVNYIPTTVDEMQLRQLFERYGPIETVKIVCDRETRQSRGYGFVKYCSAASA 82
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNEENK 100
QA +LNG L K L V A+ N+ +
Sbjct: 83 QQAVNELNGFNILNKRLKVALAASGNQRQR 112
>gi|31074960|gb|AAP42138.1| RNA-binding protein UBP-2 [Trypanosoma cruzi]
Length = 166
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGR----LRNCVFVDFGNEPLA 70
E + L L++ ++P + + L ++F YG A R R FV F + A
Sbjct: 24 EPDLLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVADRETRQSRGYGFVKFQSGSSA 83
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
QA LNG L K L V A+ ++ N++
Sbjct: 84 QQAIAGLNGFNILNKRLKVALAASGHQRNRN 114
>gi|71405355|ref|XP_805303.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70868659|gb|EAN83452.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 469
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLA 70
E + L I+HLP + ++ L FS YG A+ +R G FV + A
Sbjct: 19 EMYSHANLFIRHLPRVVDENELRMFFSPYGQILSAAVMRNIHTGENLGTAFVRYATNEQA 78
Query: 71 SQAQMQLNGLRFLGKVLSVERASK 94
A NG G+ +SV A K
Sbjct: 79 RTALHGCNGRFLHGRAISVHWAKK 102
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+L D + + L +FS YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
++ + L+G GKVL V RA K E
Sbjct: 253 QKSVLDLHGKTIDGKVLYVGRAQKKIE 279
>gi|123447214|ref|XP_001312349.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121894193|gb|EAX99419.1| hypothetical protein TVAG_408280 [Trichomonas vaginalis G3]
Length = 132
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ I +LP + + + + FS YG + V+ G R F+ F + A A LN
Sbjct: 8 IFINNLPTDMDTNAVFKYFSRYGEILKAFVKCGPNGVSRGQAFITFKKKSCAQDAIEDLN 67
Query: 79 GLRFLGKVLSVERA 92
G F GK+L V A
Sbjct: 68 GANFEGKILKVAEA 81
>gi|434386342|ref|YP_007096953.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
gi|428017332|gb|AFY93426.1| RRM domain-containing RNA-binding protein [Chamaesiphon minutus
PCC 6605]
Length = 95
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ I +L ++ L +F YG V P GR+R FV+ ++ A
Sbjct: 1 MTIYIGNLSYQATEEDLKTVFEDYGTVKRVVLPTDRETGRMRGFAFVEMSDDANEDNAIT 60
Query: 76 QLNGLRFLGKVLSVERA 92
L+G ++G+ L V +A
Sbjct: 61 NLDGAEWMGRSLKVNKA 77
>gi|308505902|ref|XP_003115134.1| CRE-EXO-3 protein [Caenorhabditis remanei]
gi|308259316|gb|EFP03269.1| CRE-EXO-3 protein [Caenorhabditis remanei]
Length = 334
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 12 NKQETENLV-TLLIKHLPDAIPQDT---LSRIFSHYG-ASSVRPC---SAGRLRNCVFVD 63
N E+ +LV TLL + +A Q T L FS G ++V+ GR R FV+
Sbjct: 244 NMSESLHLVLTLLNVSVGNAAYQTTEQELGDYFSSVGQVTNVKIVCDRETGRPRGFAFVE 303
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASK 94
F +E A +A QLNG F G+ L V ASK
Sbjct: 304 FADEASAQKACEQLNGADFNGRQLRVNLASK 334
>gi|195162221|ref|XP_002021954.1| GL14245 [Drosophila persimilis]
gi|194103852|gb|EDW25895.1| GL14245 [Drosophila persimilis]
Length = 618
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFG 65
PQ ++E + L++ +LP + L +F+++G + +R G FVD+
Sbjct: 110 PQEQEERVSSTNLIVNYLPQDMTDRELYELFANFGGINTCKIMRDFKTGYSFGYGFVDYR 169
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERA 92
E +A +LNGL K L V A
Sbjct: 170 TEADTEEAIDKLNGLYVRNKRLKVSYA 196
>gi|146083786|ref|XP_001464835.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
gi|134068930|emb|CAM67071.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
Length = 348
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L +++LP + + L IFS +G + +R +G+ FV + A +A
Sbjct: 21 LFVRYLPREVDDNRLREIFSAFGKITSSMVMRDIYSGQSLGTAFVRYEEHEEALRAMRDA 80
Query: 78 NGLRFLGKVLSVERASKPNEEN 99
+G+ LGK +SV+ A + +++
Sbjct: 81 HGMPLLGKTVSVQWAKQQHDDT 102
>gi|33860573|ref|NP_892134.1| RNA recognition motif-containing protein [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633515|emb|CAE18472.1| RNA-binding region RNP-1 (RNA recognition motif) [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 221
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
V++ + +LP ++ + +F+ YG V CS GR R FV+ +E L + A
Sbjct: 22 VSIFVGNLPFRAEREDILELFTPYG--EVMNCSLPLERDTGRKRGFAFVEMADEALETSA 79
Query: 74 QMQLNGLRFLGKVLSVERA 92
L G +G+ L + +A
Sbjct: 80 IDGLQGTELMGRPLRINKA 98
>gi|367020140|ref|XP_003659355.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
gi|347006622|gb|AEO54110.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
Length = 534
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPL 69
+ +E TL + +L + + L F H G +GR R +VDF N
Sbjct: 290 EASEKSSTLWVGNLGWGVDDNALYEEFQHVGGVVGARVVTDKDSGRSRGFGYVDFENPDA 349
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A +A + NG G+ + ++ ASKPN +
Sbjct: 350 AEKAYNEKNGAFLQGREMRLDFASKPNAD 378
>gi|12835985|dbj|BAB23448.1| unnamed protein product [Mus musculus]
Length = 590
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV---------FVDFGNEPLAS 71
TL IK+L + ++TL +FS GA ++ C+ + +N FV++ A
Sbjct: 361 TLFIKNLNFSTTEETLKGVFSKVGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 418
Query: 72 QAQMQLNGLRFLGKVLSV---ERASKP 95
+A QL G G L V ERA+KP
Sbjct: 419 KALKQLQGHTVDGHKLEVRISERATKP 445
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ L +K+L D I + L + FS +G S+ GR + FV F + A++A ++
Sbjct: 294 INLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEM 353
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
NG K L V A + +E + H Q I M
Sbjct: 354 NGRIVATKPLYVALAQR--KEERQAHLTNQYIQRM 386
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L +K+LP++I L IF YG +S V G+ + FV F +E + A +LN
Sbjct: 102 LFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLN 161
Query: 79 GLRFLGKVLSVERASKPNE 97
G K L V + K ++
Sbjct: 162 GYTVADKELYVGKFVKKSD 180
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPL 69
+ + + IK+ + + L +FS YG + V S+G+ + FV F +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G+++ V RA K E
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVE 328
>gi|242013547|ref|XP_002427466.1| RNA binding motif protein, putative [Pediculus humanus corporis]
gi|212511852|gb|EEB14728.1| RNA binding motif protein, putative [Pediculus humanus corporis]
Length = 846
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L++K+LP I ++ L +IFS G + ++ G+ R F+ F A +A+ LN
Sbjct: 4 LIVKNLPGLITKEKLHQIFSEQGVVTDVQLKYTKEGKFRKFAFIGFQKPEYAEKAKAALN 63
>gi|367008882|ref|XP_003678942.1| hypothetical protein TDEL_0A03990 [Torulaspora delbrueckii]
gi|359746599|emb|CCE89731.1| hypothetical protein TDEL_0A03990 [Torulaspora delbrueckii]
Length = 278
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 2 ATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSR--IFSHY---GASSVRPCSAGRL 56
A P ++ +E +++ TL I L + ++TL +F VR GR
Sbjct: 174 AKDPSSDAYRDSRERDDMATLKITQLNENADENTLREELLFPFAPIPKVVVVRNRETGRS 233
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKP 95
R FV F +E +A QA L+G F+ +L VE SKP
Sbjct: 234 RGLSFVTFASEEIAEQALHFLDGRGFMNLILRVE-WSKP 271
>gi|341882516|gb|EGT38451.1| hypothetical protein CAEBREN_23840 [Caenorhabditis brenneri]
Length = 84
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC---SAGRLRNCVFVDFGNEPLASQAQMQ 76
++ + + P ++ + + FS+ G ++VR GR R FV+F +E A +A +
Sbjct: 6 SVYVGNAPFQTTEEQIGQFFSNVGQVNNVRIVYDRETGRPRGFAFVEFADEAAAQRAVQE 65
Query: 77 LNGLRFLGKVLSVERAS 93
LNG F G+ L V A+
Sbjct: 66 LNGADFNGRQLRVNLAN 82
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 13 KQETENLVT------LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
KQE E+ + + +K++ + + ++ L+RIF +G + V G+ + FV+
Sbjct: 335 KQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVN 394
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
F N A+ + LNG +F K V +A K +E + +++ +MKEA
Sbjct: 395 FENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSE--REIELKSRFEQNMKEAV 445
>gi|428308134|ref|YP_007144959.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
gi|428249669|gb|AFZ15449.1| RNP-1 like RNA-binding protein [Crinalium epipsammum PCC 9333]
Length = 113
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +D L+ +F+ YG +V+ + GR R FV+ E + A
Sbjct: 1 MSIYVGNLSYEVTEDDLNSVFAEYG--TVKRVNLPNDRETGRPRGFAFVEMQTEDQENAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>gi|389748310|gb|EIM89487.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 305
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 15 ETENLVTLLIKHLPDAI--PQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNEPLA 70
E+ + T+ IK+LP ++ +TLS FS +G+ S+ P GR FV F +
Sbjct: 39 ESAPVATIYIKNLPWSLLSSPETLSEPFSRFGSVVSAHIPARGGRPMGFGFVTFEDPASV 98
Query: 71 SQAQMQLNGLRFLGKVLSVERASK 94
A ++NG G+V+ V A +
Sbjct: 99 KAAIEEMNGEELDGRVVEVSEAVR 122
>gi|198421867|ref|XP_002121273.1| PREDICTED: similar to squamous cell carcinoma antigen recognised by
T cells 3 [Ciona intestinalis]
Length = 930
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L + L A ++TL ++FS +G ++ + G+ + F+++ NE A+QA M+++
Sbjct: 776 LFVSGLNFATTEETLQKVFSEHGVVKSARIVVTKGGKSKGIAFIEYENESDAAQAVMKMD 835
Query: 79 GLRFLGKVLSVERASKP 95
G + V ++ P
Sbjct: 836 ETEMDGFTIKVAISNPP 852
>gi|29347297|ref|NP_810800.1| RNA-binding protein rbpA [Bacteroides thetaiotaomicron VPI-5482]
gi|298385201|ref|ZP_06994760.1| RNA-binding protein [Bacteroides sp. 1_1_14]
gi|383122091|ref|ZP_09942790.1| hypothetical protein BSIG_5245 [Bacteroides sp. 1_1_6]
gi|29339196|gb|AAO76994.1| putative RNA-binding protein rbpA [Bacteroides thetaiotaomicron
VPI-5482]
gi|251837563|gb|EES65655.1| hypothetical protein BSIG_5245 [Bacteroides sp. 1_1_6]
gi|298262345|gb|EFI05210.1| RNA-binding protein [Bacteroides sp. 1_1_14]
Length = 100
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I L L+ +F+ YG A + GR R FV+ N+ +A
Sbjct: 1 MNIYISGLSYGTNDADLTNLFAEYGEVSSAKVIFDRETGRSRGFAFVEMTNDAEGQKAID 60
Query: 76 QLNGLRFLGKVLSVE----RASKPN 96
+LNG+ + KV+SV RA KP+
Sbjct: 61 ELNGVEYDQKVISVSVARPRAEKPS 85
>gi|17508567|ref|NP_493029.1| Protein R06C1.4 [Caenorhabditis elegans]
gi|3878851|emb|CAB03222.1| Protein R06C1.4 [Caenorhabditis elegans]
Length = 84
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC---SAGRLRNCVFVDFGNEPLASQAQMQ 76
++ + ++P ++ + F+ G ++VR GR R FV+F E A +A Q
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 77 LNGLRFLGKVLSVERASK 94
LNG+ F G+ L V A+K
Sbjct: 67 LNGVAFNGRNLRVNYANK 84
>gi|380012874|ref|XP_003690499.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Apis florea]
Length = 902
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLN 78
L +K LP + ++ L IF +GA VR + G + +V+F +E A++A + +
Sbjct: 755 LFVKGLPVSTTKEELEEIFKVHGALKEVRIVTYRNGHSKGLAYVEFMDENSAAKALLATD 814
Query: 79 GLRFLGKVLSVERASKPNEENK 100
G++ KV+SV S+P E K
Sbjct: 815 GMKIADKVISVA-ISQPPERKK 835
>gi|302892801|ref|XP_003045282.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
gi|256726207|gb|EEU39569.1| hypothetical protein NECHADRAFT_43518 [Nectria haematococca mpVI
77-13-4]
Length = 718
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 2 ATAPFDSGPQNKQETENLVTLLIKHLPDAIP-QDTLSRIFSHYGASSVR--PCSAGRLRN 58
AT + K+E + L+I++LP +I + LS +F +G P S G+L+
Sbjct: 127 ATGEVSANKARKEELQKPPKLIIRNLPWSIKTSEQLSNLFRSFGKIKFADLPQSQGKLKG 186
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
F+ + A +A +NG G+ L+V+ A
Sbjct: 187 FGFITIRGKKNAEKALEAINGKEIDGRTLAVDWA 220
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|118359250|ref|XP_001012866.1| hypothetical protein TTHERM_00094120 [Tetrahymena thermophila]
gi|89294633|gb|EAR92621.1| hypothetical protein TTHERM_00094120 [Tetrahymena thermophila SB210]
Length = 1438
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLR 81
+ + L ++ ++ L +F YG R + F++FG+ A+QA ++NG
Sbjct: 1219 IYVGRLQKSVQREDLLNLFGRYG----EITDIMRKEDYAFIEFGDSSFAAQAVKEMNGYN 1274
Query: 82 FLGKVLSVERASKPNEENK 100
G + VE A +P +E K
Sbjct: 1275 LNGTKIVVEGA-RPKDEAK 1292
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 255 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 314
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 315 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 352
>gi|383865034|ref|XP_003707981.1| PREDICTED: ELAV-like protein 2-like [Megachile rotundata]
Length = 502
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGN 66
Q QE E+ L++ +LP ++ QD + +FS G +R G+ FV++
Sbjct: 20 QASQE-ESKTNLIVNYLPQSMTQDEIRSLFSSIGEVESCKLIRDKLTGQSLGYGFVNYHR 78
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A +A LNGLR K + V A +P+ E
Sbjct: 79 SEDAEKAINTLNGLRLQNKTIKVSYA-RPSSE 109
>gi|297741313|emb|CBI32444.3| unnamed protein product [Vitis vinifera]
Length = 342
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 4 APFDSGPQNKQETENL---VTLLIKHLPDAIPQDTL-SRIFSHYGASSVRPCSAGRLRNC 59
A F +G + +L V L + DA+ Q+T +R S GA V + GR +
Sbjct: 87 ATFSTGDRRTDAGSDLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGY 146
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
FV FG+E S+A ++NG+ + + + A+ + + +Q++
Sbjct: 147 GFVRFGDENERSRAMNEMNGIYCSSRPMRIGVATPKKASGYQQQYSSQAL 196
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 10 PQNKQE---TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
P+N E T + +L +K+LP + Q+ L ++F H G + V P +G FV
Sbjct: 262 PKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVH 321
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
F +A +A G++L A P ++
Sbjct: 322 FKERYMAMKALKNTERYELDGQLLDCSLAKPPADK 356
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
+ +K+ D + ++L +F YG S + R FV F N A A +
Sbjct: 182 FTNVYVKNFGDELTDESLKEMFEKYGTITSHRVMIKENKSRGFGFVAFENPESAEVAVQE 241
Query: 77 LNGLRFL-GKVLSVERASKPNE 97
LNG GKVL V RA K NE
Sbjct: 242 LNGKELGDGKVLYVGRAQKKNE 263
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSV---RPCSAGRLRNCVFVDFGNEPLAS 71
E + IK+L +A ++ L R F +G S+V P GR FV+F + A
Sbjct: 186 EKFTNIYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGR--QFAFVNFEDHEAAH 243
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
+A +LNG + K + V RA K +E
Sbjct: 244 RATEELNGRKLGDKEVYVGRAQKKSE 269
>gi|74138233|dbj|BAE28602.1| unnamed protein product [Mus musculus]
Length = 326
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + Q+ L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 78 NGLRFLGKVLSVERASKPNE 97
NGLR K + V A +E
Sbjct: 82 NGLRLQSKTIKVSYAHPSSE 101
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPL 69
+ + + IK+ + + L +FS YG + V S+G+ + FV F +
Sbjct: 241 RSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G+++ V RA K E
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVE 328
>gi|388579109|gb|EIM19437.1| hypothetical protein WALSEDRAFT_61444 [Wallemia sebi CBS 633.66]
Length = 528
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 22 LLIKHLPDAIPQDTLSRIF------------SHYGASSVRPCSAGRLRNCVFVDFGNEPL 69
++IK++P ++P+D L I HY S+ P S R F +F
Sbjct: 45 VVIKNIPFSLPKDQLLNIIHDLNIPTPYAFNYHYDTSN--PTSDPAFRGLAFANFRTSHD 102
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRN 120
AS LNG LG+ L VE + E+K + +++ M + N
Sbjct: 103 ASAIVAALNGFDVLGRKLRVEYKKVLHPEDKERIEREKALRRMASLGINNN 153
>gi|398013679|ref|XP_003860031.1| hypothetical protein, unknown function, partial [Leishmania
donovani]
gi|322498250|emb|CBZ33324.1| hypothetical protein, unknown function, partial [Leishmania
donovani]
Length = 280
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLAS 71
T + L +++LP + + L IFS +G + +R +G+ FV + A
Sbjct: 22 TPSSTNLFVRYLPREVDDNRLREIFSAFGKITSSMVMRDIYSGQSLGTAFVRYEEHEEAL 81
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEEN 99
+A +G+ LGK +SV+ A + +++
Sbjct: 82 RAMRDAHGMPLLGKTVSVQWAKQQHDDT 109
>gi|47225636|emb|CAG07979.1| unnamed protein product [Tetraodon nigroviridis]
Length = 382
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNC 59
+P +GP N NL+ + +LP + Q+ +F G VR G+
Sbjct: 32 SPMQTGPTNDDSKTNLI---VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 88
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 89 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 121
>gi|428320431|ref|YP_007118313.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
gi|428244111|gb|AFZ09897.1| RNP-1 like RNA-binding protein [Oscillatoria nigro-viridis PCC
7112]
Length = 102
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA----GRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ L++ F YG A GR+R FV+ E + A
Sbjct: 1 MSIYVGNLSYEVTQEHLNQTFGEYGTVKRVQLPADRETGRMRGFAFVEMSTEAEEAAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP EE
Sbjct: 61 ALDGAEWMGRDLKVNKA-KPREE 82
>gi|401839791|gb|EJT42839.1| HSH49-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 213
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRP----CSAGRLRNCVFVDFGNEPLASQAQ 74
+ L +K+L D+I D L++IF +G + +P S G+L+ C V F + A A
Sbjct: 107 IAKLFVKNLADSIDIDQLAKIFGKFGKTISKPEIFHLSNGKLK-CACVYFEDFEKADLAI 165
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKH 103
LN ++++ A K N + K+
Sbjct: 166 KSLNNQLVANSRITIDYAFKENGKASTKY 194
>gi|384252120|gb|EIE25597.1| splicing factor, CC1-like protein [Coccomyxa subellipsoidea C-169]
Length = 497
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
L I +L I + L ++F +GA +++ GR + FV + P A++A QL+
Sbjct: 235 LYIGNLHPNIQEQDLKQVFEAFGAVEYITLQKDPTGRSQGYGFVQYQTTPDATKAMQQLD 294
Query: 79 GLRFLGKVLSVERA 92
GL G +SV+ A
Sbjct: 295 GLDIAGSQISVKIA 308
>gi|374385669|ref|ZP_09643172.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
gi|373225371|gb|EHP47705.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
Length = 100
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I +L I L +F+ YG A + +GR R FV+ N+ +A
Sbjct: 1 MNIYISNLSHGINDANLHELFNEYGEISSAKVITDRESGRSRGFGFVEMKNDDEGQKAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMK 113
+LN + G+++SV A E + + + S +S +
Sbjct: 61 ELNEAEYDGRIISVAVARPRTERSNNGSYNRNSYNSNR 98
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
V L +K+L D I + L IFS YG ++ V S R + FV F N A++A +
Sbjct: 285 VNLYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTE 344
Query: 77 LNGLRFLGKVLSVERASK 94
NG K L V A +
Sbjct: 345 ANGRVEYSKPLYVAIAQR 362
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQ 72
T + +L +K+LP A+ Q+ L ++F H G + + P AG FV F +A +
Sbjct: 262 TAQVKSLYVKNLPKAVTQEQLKKLFEHLGEVTKVVIPPAKAGHENRYGFVHFKERSMAMK 321
Query: 73 AQMQLNGLRFLGKVLSVERASKPNEENK 100
A G++L A KP + K
Sbjct: 322 ALEDTERFELDGQLLDCSLA-KPLADKK 348
>gi|410921400|ref|XP_003974171.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 4-like [Takifugu
rubripes]
Length = 414
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNC 59
+P +GP N NL+ + +LP + Q+ +F G VR G+
Sbjct: 69 SPMQTGPTNDDSKTNLI---VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 125
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 126 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 158
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L +F+ +G + SVR GR R FV+F + A +A
Sbjct: 190 FTNIYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVD 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG GKV+ V RA K
Sbjct: 250 EMNGKELNGKVIYVGRAQK 268
>gi|410087404|ref|ZP_11284108.1| Putative periplasmic substrate-binding transport protein
[Morganella morganii SC01]
gi|455739900|ref|YP_007506166.1| Putative periplasmic substrate-binding transport protein
[Morganella morganii subsp. morganii KT]
gi|409766139|gb|EKN50235.1| Putative periplasmic substrate-binding transport protein
[Morganella morganii SC01]
gi|455421463|gb|AGG31793.1| Putative periplasmic substrate-binding transport protein
[Morganella morganii subsp. morganii KT]
Length = 374
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFE 105
VFVDF NEPL + L G+R LGKVL E +K E+ K +
Sbjct: 149 VFVDFRNEPLKNT----LPGMRVLGKVLHREEKAKAFEDFYQKQMK 190
>gi|326930082|ref|XP_003211181.1| PREDICTED: probable RNA-binding protein 19-like [Meleagris
gallopavo]
Length = 746
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV---------FVDFGNEPLAS 71
TL IK+L +DTL FS GA V+ C+ + +N FV++ A
Sbjct: 519 TLFIKNLNFTTTEDTLKETFSKVGA--VKSCTISKKKNKAGTLLSMGFGFVEYKKPEGAQ 576
Query: 72 QAQMQLNGLRFLGKVLSV---ERASKP 95
+A QL G G L V ERA +P
Sbjct: 577 KALRQLQGCIVDGHKLEVKISERAVRP 603
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
E + L +++L +DT+ + F + V ++R+ FV F + A +A
Sbjct: 244 ETVKILYVRNLMIETTEDTIKKSFGQFNPGCVE--RVKKIRDYAFVHFASREDAVRAMNS 301
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
LNG G L V A ++E ++ +A ++ EAA
Sbjct: 302 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGAVAEAA 341
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
V L +K+L D+I + L + FS YG ++ V GR + FV F + A+ A +
Sbjct: 287 VNLYVKNLDDSIDDERLCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTE 346
Query: 77 LNGLRFLGKVLSVERASKPNEENKH 101
LNG K L V A + E H
Sbjct: 347 LNGRVVGSKPLYVALAQRKEERKAH 371
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 7 DSGPQN---KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNC 59
+ GPQN K +T L++ +LP + ++ L ++FS +G ++ S+G
Sbjct: 12 NPGPQNPETKAKTN----LIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGY 67
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++G+ A A ++NG K L V A
Sbjct: 68 GFVNYGSAEEAEHAIQKMNGTTLESKTLKVSYA 100
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC--SAGRLRNCVFVDFGNEPLASQAQMQ 76
+ +K+ + + ++ L +F YG+ + G+ R FV F N A +A +
Sbjct: 191 FTNVYVKNFGEDLTEEALHEMFEKYGSITSHRVMMKDGKSRGFGFVAFENPDAAERAVQE 250
Query: 77 LNGLRFL-GKVLSVERASKPNE 97
LN GKVL V RA K NE
Sbjct: 251 LNAKELSDGKVLYVGRAQKKNE 272
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 325 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 384
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 385 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 422
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
L +K+L + QD +FS +G ++ + G+ R FVDF + A +A
Sbjct: 198 FTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVD 257
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
LNG + + L V RA E K E + I
Sbjct: 258 ALNGYQLESRTLFVGRAQAKAERKKILQHEYKDI 291
>gi|164657808|ref|XP_001730030.1| hypothetical protein MGL_3016 [Malassezia globosa CBS 7966]
gi|159103924|gb|EDP42816.1| hypothetical protein MGL_3016 [Malassezia globosa CBS 7966]
Length = 255
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSV-------RPCSAGRLRNCVFVDFGNEPLASQ 72
L + HL ++ D L +F+ Y S RP + R FVDF ++ +
Sbjct: 138 TVLYVSHLAYSVNNDKLMELFAPYNVKSAQVVYNRFRPRQS---RGFAFVDFHSKQDQEK 194
Query: 73 AQMQLNGLRFLGKVLSVERA-SKPNEENKHKHFEAQSISSMKE 114
A + NG +G+ L+V A +P +N++ Q + +E
Sbjct: 195 AMAEKNGTELMGRTLNVSIALQQPENDNENGGHNGQDLEPSQE 237
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
E + L +++L +DT+ + F + V ++R+ FV F + A A
Sbjct: 136 ETVKILYVRNLMIETTEDTIKKSFGQFNPGCVE--RVKKIRDYAFVHFVSREDAVHAMNN 193
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTR 119
LNG G L V A ++E ++ +A + EAAV +
Sbjct: 194 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAAVQQ 236
>gi|365758210|gb|EHN00063.1| Hsh49p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 213
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRP----CSAGRLRNCVFVDFGNEPLASQAQ 74
+ L +K+L D+I D L++IF +G + +P S G+L+ C V F + A A
Sbjct: 107 IAKLFVKNLADSIDIDQLAKIFGKFGKTISKPEIFHLSNGKLK-CACVYFEDFEKADLAI 165
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKH 103
LN ++++ A K N + K+
Sbjct: 166 KSLNNQLVANNRITIDYAFKENGKASTKY 194
>gi|146197780|dbj|BAF57609.1| polyadenylate-binding protein [Dugesia japonica]
Length = 216
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQ 72
K E N T+ I LP+++ ++ L IF +YG C +V+F NE A
Sbjct: 7 KMENRNTKTIYISCLPNSVTEEDLLSIFENYGLCV--SCELNSEECTAYVEFDNETSARN 64
Query: 73 AQMQLNGL 80
A + +NG+
Sbjct: 65 A-LSMNGI 71
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCSA--GRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + ++L +FS +G + SV+ G+ + FV + A++A
Sbjct: 1 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVE 60
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
++NG GK++ V RA K E
Sbjct: 61 EMNGKEISGKIIFVGRAQKKVE 82
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + + L +FS YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 178 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 237
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 238 QKAVLDLHGKSIDGKVLYVGRAQKKIE 264
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
E + L +++L +DT+ + F + V ++R+ FV F + A +A
Sbjct: 244 ETVKILYVRNLMIETTEDTIKKSFGQFNPGCVE--RVKKIRDYAFVHFASREDAVRAMNS 301
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
LNG G L V A ++E ++ +A ++ EAA
Sbjct: 302 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGAVAEAA 341
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 10 PQNKQE---TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
P+N E T + +L +K+LP + Q+ L ++F H G + V P +G FV
Sbjct: 261 PKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVH 320
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
F +A +A G++L A P ++
Sbjct: 321 FKERYMAMKALKNTERYELDGQLLDCSLAKPPADK 355
>gi|254574096|ref|XP_002494157.1| Essential conserved protein that is part of the 90S preribosome
[Komagataella pastoris GS115]
gi|238033956|emb|CAY71978.1| Essential conserved protein that is part of the 90S preribosome
[Komagataella pastoris GS115]
Length = 810
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
++IK+LP + + +FS +G ++ V R FV+F A QA QL
Sbjct: 688 IIIKNLPFEATRKDIVELFSSFGHLKSARVPKKFDSSARGFAFVEFSLLKEAEQAMDQLQ 747
Query: 79 GLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
G+ LG+ L +E A + + EN + E + K+ A
Sbjct: 748 GVHLLGRRLVMEYAQQ-DAENAEEEIERMTKKVQKQVA 784
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFV 62
FD Q + + L +K+L D + D L F+ +G ++ V SAG+ + FV
Sbjct: 302 FDEVRQERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKDSAGKSKGFGFV 361
Query: 63 DFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94
+ + A++A ++NG LGK + V A +
Sbjct: 362 CYSSPEEATRAVTEMNGKMLLGKPMYVALAQR 393
>gi|328354024|emb|CCA40421.1| Multiple RNA-binding domain-containing protein 1 [Komagataella
pastoris CBS 7435]
Length = 834
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
++IK+LP + + +FS +G ++ V R FV+F A QA QL
Sbjct: 712 IIIKNLPFEATRKDIVELFSSFGHLKSARVPKKFDSSARGFAFVEFSLLKEAEQAMDQLQ 771
Query: 79 GLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
G+ LG+ L +E A + + EN + E + K+ A
Sbjct: 772 GVHLLGRRLVMEYAQQ-DAENAEEEIERMTKKVQKQVA 808
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 10 PQNKQE---TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
P+N E T + +L +K+LP + Q+ L ++F H G + V P +G FV
Sbjct: 262 PKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVPPAKSGHENRYGFVH 321
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
F +A +A G++L A P ++
Sbjct: 322 FKERYMAMKALKNTERYELDGQLLDCSLAKPPADK 356
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + F+ G ++ + + G+LR FV++ N A++A
Sbjct: 221 NFTNVYVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAV 280
Query: 75 MQLNGLRFLGKVLSVERASKPNE--ENKHKHFEA 106
+LN F G+ L V RA K +E + K +EA
Sbjct: 281 EELNETDFKGQTLHVGRAQKKHERLQELKKQYEA 314
>gi|198432988|ref|XP_002130386.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2 isoform 1 [Ciona intestinalis]
Length = 482
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ I LP+ + D + + + +G + V+ + + F +F + L QA L
Sbjct: 274 MFIGGLPNYLNDDQVKELLTSFGPLRAFNLVKDSATALSKGYAFAEFADYSLTDQAIAGL 333
Query: 78 NGLRFLGKVLSVERASKPNEENKH 101
NG++ K L V+RAS + N H
Sbjct: 334 NGMQLGDKKLIVQRASIGAKNNPH 357
>gi|348504313|ref|XP_003439706.1| PREDICTED: ELAV-like protein 4-like [Oreochromis niloticus]
Length = 476
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNC 59
+P +GP N NL+ + +LP + Q+ +F G VR G+
Sbjct: 143 SPMQTGPTNDDSKTNLI---VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 199
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 200 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 232
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPL 69
+ + + IK+ + + L +FS YG + V S+G+ + FV F +
Sbjct: 241 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 300
Query: 70 ASQAQMQLNGLRFLGKVLSVERASKPNE 97
A +A ++NG G+++ V RA K E
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVE 328
>gi|38344030|emb|CAE01512.2| OJ991214_12.1 [Oryza sativa Japonica Group]
gi|38346331|emb|CAE02067.2| OJ000126_13.13 [Oryza sativa Japonica Group]
gi|116309334|emb|CAH66418.1| H0622F05.1 [Oryza sativa Indica Group]
gi|116309399|emb|CAH66476.1| OSIGBa0137L20.5 [Oryza sativa Indica Group]
Length = 137
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I L +D+L+ FS YG A+ V R + FV F +E A++A+ ++
Sbjct: 39 LFIGGLSQFATEDSLAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEM 98
Query: 78 NGLRFLGKVLSVERA 92
NG G+V+ V+ A
Sbjct: 99 NGKVLNGRVIYVDIA 113
>gi|357617939|gb|EHJ71078.1| putative RNA-binding protein [Danaus plexippus]
Length = 397
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 7 DSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGN 66
DS QN E+ L+I +LP ++ Q+ + +FS G V C R + F D N
Sbjct: 5 DSEQQNGSGEESKTNLIINYLPQSMTQEEIRSLFSSIG--EVESCKLIRNKGAAFPDALN 62
Query: 67 EPL-------------------ASQAQMQLNGLRFLGKVLSVERASKPNEE 98
L A +A LNGLR K + V A +P+ E
Sbjct: 63 HALHGGGQSLGYAFVNYHRPEDAEKAIATLNGLRLQNKTIKVSYA-RPSSE 112
>gi|344924967|ref|ZP_08778428.1| RNA-binding region RNP-1 [Candidatus Odyssella thessalonicensis
L13]
Length = 94
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L + +LP ++ TL+++F +GA + +GR + FV+ +E A+ A +L
Sbjct: 5 LYVSNLPYSVNDQTLAQLFGDHGAVVSAKVITDKMSGRSKGFGFVEMESEQQANSAMEKL 64
Query: 78 NGLRFLGKVLSVERASKPNEENKHKH 103
NG G+ ++V A +P EE +
Sbjct: 65 NGQDLNGRRMNVAIA-RPKEEGAERR 89
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++ + +F YG AS +G+ R FV++ A +A
Sbjct: 232 NFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKA 291
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN F G+ L V RA K + EE K +EA
Sbjct: 292 VEELNDSDFKGQKLYVGRAQKKHEREEELRKQYEA 326
>gi|198432986|ref|XP_002130494.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2 isoform 2 [Ciona intestinalis]
Length = 472
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ I LP+ + D + + + +G + V+ + + F +F + L QA L
Sbjct: 270 MFIGGLPNYLNDDQVKELLTSFGPLRAFNLVKDSATALSKGYAFAEFADYSLTDQAIAGL 329
Query: 78 NGLRFLGKVLSVERASKPNEENKH 101
NG++ K L V+RAS + N H
Sbjct: 330 NGMQLGDKKLIVQRASIGAKNNPH 353
>gi|428768452|ref|YP_007160242.1| RNP-1 like RNA-binding protein [Cyanobacterium aponinum PCC
10605]
gi|428682731|gb|AFZ52198.1| RNP-1 like RNA-binding protein [Cyanobacterium aponinum PCC
10605]
Length = 101
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSV----RPCSAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +LP + + L +F+ YG S GR+R FV+ N+ A
Sbjct: 1 MSIYVGNLPYEVTSEDLMEVFAEYGTVSRVHIPTDRETGRMRGFAFVEMENDNQEESAID 60
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
L+G ++ + L V +A KP E
Sbjct: 61 ALDGAEWMKRELRVNKA-KPRE 81
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
F + A++A ++NG K L V A + +E + H Q + M V
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAHLTNQYMQRMASVRV 391
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 277 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 336
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 337 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 374
>gi|254582004|ref|XP_002496987.1| ZYRO0D12782p [Zygosaccharomyces rouxii]
gi|238939879|emb|CAR28054.1| ZYRO0D12782p [Zygosaccharomyces rouxii]
Length = 273
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 48 VRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEEN 99
VR GR R FV F +E +A QA LNG F+ +L VE SKP ++
Sbjct: 223 VRNRETGRSRGLSFVTFASEEIAEQALHFLNGRGFMNLILHVE-WSKPKSKD 273
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCS--AGRLRNCVFVDFGNEPLAS 71
+ + + IK+ D + + L +F YG + SV+ + G+ + FV F A+
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEAN 245
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNE 97
+A ++NG GK+L V RA K E
Sbjct: 246 KAVEEMNGKDINGKMLFVGRAQKKAE 271
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|195116106|ref|XP_002002597.1| GI11879 [Drosophila mojavensis]
gi|193913172|gb|EDW12039.1| GI11879 [Drosophila mojavensis]
Length = 724
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD + +F +G +R G+ FV++ + A +A L
Sbjct: 126 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 185
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 186 NGLRLQNKTIKVSIA-RPSSE 205
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L DAI + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDAIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG + L V A + E +
Sbjct: 340 FSSPEEATKAVTEMNGRIVATEPLYVALAQRKEERQAY 377
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L + D L F YG+ S V G+ R FV+F N A++A
Sbjct: 219 FTNVYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVE 278
Query: 76 QLNGLRFLGKVLSVERASKPNE 97
LNG +F K V +A K +E
Sbjct: 279 ALNGKKFDDKEWYVGKAQKKSE 300
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 13 KQETENLVT------LLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
KQE E+ + + +K++ + + ++ L+RIF +G + V G+ + FV+
Sbjct: 196 KQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVN 255
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
F N A+ + LNG +F K V +A K +E + +++ +MKEA
Sbjct: 256 FENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSE--REIELKSRFEQNMKEAV 306
>gi|329957347|ref|ZP_08297867.1| hypothetical protein HMPREF9445_02745 [Bacteroides clarus YIT
12056]
gi|328523060|gb|EGF50163.1| hypothetical protein HMPREF9445_02745 [Bacteroides clarus YIT
12056]
Length = 82
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPC---SAGRLRNCVFVDFGNEPLASQAQM 75
+ + + +L + +D L ++ YG SSV+ + GR R FV+ + A++A
Sbjct: 1 MNIYVGNLNYRVKEDDLQKVMEDYGTVSSVKFIMDRATGRFRGIAFVEMEDSAAAAKAIA 60
Query: 76 QLNGLRFLGKVLSVERASKP 95
+L+G F G+ + V+ A P
Sbjct: 61 ELDGAEFFGRQMVVKEARPP 80
>gi|145219698|ref|YP_001130407.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
gi|145205862|gb|ABP36905.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
Length = 90
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + + +LP + +D L FS +G A+ + +GR + FV+ ++ A +A
Sbjct: 1 MNIYVGNLPYTVSEDDLRDAFSEFGQVESANIIMDKFSGRSKGFGFVEMSDDDAAREAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
++ F+G+ + V A KP EE
Sbjct: 61 AMHNKDFMGRSIMVNEA-KPREE 82
>gi|432874007|ref|XP_004072426.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like isoform 1 [Oryzias latipes]
Length = 941
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLN 78
+ I LP + ++ L I G VR + +GR + +V+F +E ASQA ++++
Sbjct: 781 IFISGLPLSCTKEQLEEICKQQGTVKDVRLVTYRSGRPKGLAYVEFADETQASQAVLKMD 840
Query: 79 GLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
G+ G +SV ++ P K ++ ++ M
Sbjct: 841 GVEIEGHKISVAISNPPRRSVNEKPGSSRPVTDM 874
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 326 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 385
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 386 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 423
>gi|82621158|gb|ABB86267.1| DNA binding protein ACBF-like [Solanum tuberosum]
Length = 372
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLP----DAIPQDTL-SRIFSHYGASSVRPCSAGRLRN 58
A F +G + + ET + ++ + L D + +DT SR S GA V + G +
Sbjct: 111 AAFSAG-EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRFPSVKGAKVVVDANTGHSKG 169
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
FV FG+E S+A ++NG+ + + V A+ P + + + F +Q++
Sbjct: 170 YGFVRFGDESERSRAMTEMNGIYCSSRPMRVGVAT-PKKPSAQQQFSSQAV 219
>gi|389593175|ref|XP_003721841.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438343|emb|CBZ12095.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 495
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 10 PQN-KQETENLVTLLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS-AGRLRNCVFVDFGN 66
PQ+ +Q+ T+ + HLP +PQ L + + G + VR C+ AG FV+
Sbjct: 367 PQHPRQDEMKRRTIYVSHLPGLLPQSMLLELLTTAGPVNKVRICAGAGYCTLFAFVEMRT 426
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA 92
A +A M +NGL+ +G + V+ A
Sbjct: 427 LEGAQRA-MCMNGLQLMGFAIRVQTA 451
>gi|421494274|ref|ZP_15941624.1| hypothetical protein MU9_2795 [Morganella morganii subsp. morganii
KT]
gi|400191441|gb|EJO24587.1| hypothetical protein MU9_2795 [Morganella morganii subsp. morganii
KT]
Length = 363
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFE 105
VFVDF NEPL + L G+R LGKVL E +K E+ K +
Sbjct: 137 VVFVDFRNEPLKNT----LPGMRVLGKVLHREEKAKAFEDFYQKQMK 179
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 300 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 359
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 360 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 397
>gi|351701133|gb|EHB04052.1| ELAV-like protein 1 [Heterocephalus glaber]
Length = 224
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ L++ LP + QD L +FS G A +R AG FV++ A +A
Sbjct: 20 MNLIVNCLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIC 79
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
LNGLR K + V A +P+ E
Sbjct: 80 TLNGLRLPSKTIKVSYA-RPSSE 101
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
L +K++ + +F+ +G ++S+ + G+L+ FV++ N A +A
Sbjct: 218 YTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVE 277
Query: 76 QLNGLRFLGKVLSVERASKPNEENK--HKHFEAQSISSM 112
LN G+ L V RA K NE K +EA + M
Sbjct: 278 ALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKM 316
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 13 KQETENLV------TLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVD 63
KQE + +V + +K+L + ++ L++ FS +G + V + G+ R FV+
Sbjct: 195 KQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVN 254
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE---ENKHKHFEAQSISSMKEAA 116
F N A++A LNG K V +A K +E E KH+ FE +MKEAA
Sbjct: 255 FENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHR-FE----QTMKEAA 305
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D + + L + FS +G S+ GR + FV
Sbjct: 267 FEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 326
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 327 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 364
>gi|319902685|ref|YP_004162413.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
gi|319417716|gb|ADV44827.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
Length = 102
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 36 LSRIFSHYG-ASSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91
L+ +FS YG SS R + GR R FV+ ++ A +A +LNG + K +SV
Sbjct: 17 LNDLFSEYGEVSSARVITDRETGRSRGFAFVEMPDDEAAQKAIDELNGAEYDNKTISVNV 76
Query: 92 ASKPNEE 98
A +P EE
Sbjct: 77 A-RPREE 82
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 221 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 280
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 281 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 318
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
V L +K+L D + + L F++YG ++ V S G R FV F A+ A +
Sbjct: 361 VNLYVKNLDDLLQDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAE 420
Query: 77 LNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTR 119
+NG GK + V A + +E + EAQ V R
Sbjct: 421 MNGKLITGKPVYVAFAQR--KEVRRAQLEAQHAQRATGVLVNR 461
>gi|427782345|gb|JAA56624.1| Putative rna-binding protein elav/hu rrm superfamily [Rhipicephalus
pulchellus]
Length = 319
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L+I +LP + + +F+ G + VR + G FVD+ A++A L
Sbjct: 12 LIINYLPQGLTDEEFRSLFTSIGPIKSSKIVRHKATGYSYGFGFVDYQGAGDAARAVESL 71
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSI 109
NGL+ K + V A E KH + + I
Sbjct: 72 NGLQLQNKKIKVAYARPGGETIKHANLYIRGI 103
>gi|68072247|ref|XP_678037.1| RNA binding protein [Plasmodium berghei strain ANKA]
gi|56498375|emb|CAI00313.1| RNA binding protein, putative [Plasmodium berghei]
Length = 318
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I H+P+ Q L + FS +G A + GR R FV + N A+ A Q+
Sbjct: 179 LFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYENIESAAAAISQM 238
Query: 78 NGLRFLGKVLSV 89
NG L K L V
Sbjct: 239 NGFMALNKKLKV 250
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|297737425|emb|CBI26626.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 12 NKQETE-NLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLA 70
N+ E++ N T+ + L + D L ++FS YG G+ C FV F N A
Sbjct: 43 NQGESDPNNTTIFVGGLDSNVTDDYLRQVFSQYGELVHVKIPVGK--RCGFVQFANRACA 100
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNEE 98
QA LNG + + + + P+ +
Sbjct: 101 EQALAGLNGTQLGAQSIRLSWGRSPSNK 128
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K+L + + L +FS +G + V S+G R FV+F A +A +
Sbjct: 190 FTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVV 249
Query: 76 QLNGLRFLGKVLSVERASK 94
+NG G++L V RA K
Sbjct: 250 HMNGKEVSGRLLYVGRAQK 268
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|440803264|gb|ELR24172.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 308
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L + +LP + + L R+FS YGA VR + G + FV+F A QA M L
Sbjct: 188 LFVYNLPPSSDDNYLYRLFSPYGALFNVKLVRDLATGTCKGYGFVNFMKMEDAQQAIMAL 247
Query: 78 NGLR 81
NG +
Sbjct: 248 NGYQ 251
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 209 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 268
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 269 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 306
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q+K + L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 248 FEQMKQDKITRYQGLNLYVKYLDDYIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 307
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 308 FSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAH 345
>gi|198470946|ref|XP_002133619.1| GA22715 [Drosophila pseudoobscura pseudoobscura]
gi|198145693|gb|EDY72246.1| GA22715 [Drosophila pseudoobscura pseudoobscura]
Length = 672
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFG 65
PQ ++E + L++ +LP + L +F+++G + +R G FVD+
Sbjct: 110 PQEQEERVSSTNLIVNYLPQDMTDRELYELFANFGGINTCKIMRDFKTGYSFGYGFVDYR 169
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERA 92
E +A +LNGL K L V A
Sbjct: 170 TEADTEEAIDKLNGLYVRNKRLKVSYA 196
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 209 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 268
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 269 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 306
>gi|146083784|ref|XP_001464834.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
gi|134068929|emb|CAM67070.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
Length = 347
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLAS 71
T + L +++LP + + L IFS +G + +R +G+ FV + A
Sbjct: 22 TPSSTNLFVRYLPREVDDNRLREIFSAFGKITSSMVMRDIYSGQSLGTAFVRYEEHEEAL 81
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEEN 99
+A +G+ LGK +SV+ A + +++
Sbjct: 82 RAMRDAHGMPLLGKTVSVQWAKQQHDDT 109
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 171 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 230
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 231 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 268
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K+ D + + L +FS YG + SV+ + G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSMDGKVLYVGRAQKKIE 279
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 216 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 275
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 276 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 313
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>gi|414587608|tpg|DAA38179.1| TPA: hypothetical protein ZEAMMB73_126317 [Zea mays]
Length = 750
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
L I +LP + L +FS +G A ++ + G+ + FV + + A+ A
Sbjct: 427 TNLYIGYLPPTMDDAGLVSLFSQFGEIVMAKVIKDRNTGQSKGYGFVKYSDVSQANAAIA 486
Query: 76 QLNGLRFLGKVLSVERASKP 95
+NG G+V++V A KP
Sbjct: 487 AMNGHHLEGRVIAVRVAGKP 506
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 243 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 302
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 303 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 340
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCS--AGRLRNCVFVDFGNEPLAS 71
+ + + IK+ D + + L +FS YG + SV+ + G+ + FV F A+
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDAN 245
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
+A ++NG GK++ V RA K E + FE +K+ ++R Q
Sbjct: 246 KAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFE-----QLKQERISRYQ 292
>gi|432856226|ref|XP_004068415.1| PREDICTED: ELAV-like protein 4-like [Oryzias latipes]
Length = 439
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 4 APFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNC 59
+P +GP N NL+ + +LP + Q+ +F G VR G+
Sbjct: 105 SPMQTGPTNDDSKTNLI---VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY 161
Query: 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 162 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 194
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
F + A++A ++NG K L V A + +E + + + + M NQ
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAYLTNEYMQRMASVRAVPNQ 395
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRVVATKPLYVALAQRKEERQAH 377
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRN 58
++P DSG +T L++ +LP + Q+ L +F G VR G+
Sbjct: 26 SSPVDSGKTEDSKTN----LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 295 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 354
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 355 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 392
>gi|442625619|ref|NP_001259974.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
gi|440213243|gb|AGB92511.1| RNA-binding protein 9, isoform J [Drosophila melanogaster]
Length = 684
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASS----VRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD + +F +G +R G+ FV++ + A +A L
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 172 NGLRLQNKTIKVSIA-RPSSE 191
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|354491613|ref|XP_003507949.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cricetulus griseus]
Length = 360
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRN 58
++P DSG +T L++ +LP + Q+ L +F G VR G+
Sbjct: 26 SSPVDSGKTEDSKTN----LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>gi|327289491|ref|XP_003229458.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Anolis carolinensis]
Length = 905
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLN 78
L I LP + ++ L + +G VR + AGR + +V+F NE ASQA ++++
Sbjct: 751 LFIAGLPFSYTKEELEELCKAHGTVKEVRLVTNRAGRSKGMAYVEFENEAQASQAVLKMD 810
Query: 79 GLRFLGKVLSVERASKP 95
GL V+ V ++ P
Sbjct: 811 GLAVNDYVIKVAISNPP 827
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 216 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 275
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 276 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 313
>gi|432874009|ref|XP_004072427.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like isoform 2 [Oryzias latipes]
Length = 923
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG-ASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLN 78
+ I LP + ++ L I G VR + +GR + +V+F +E ASQA ++++
Sbjct: 763 IFISGLPLSCTKEQLEEICKQQGTVKDVRLVTYRSGRPKGLAYVEFADETQASQAVLKMD 822
Query: 79 GLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
G+ G +SV ++ P K ++ ++ M
Sbjct: 823 GVEIEGHKISVAISNPPRRSVNEKPGSSRPVTDM 856
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDDIDDERLQKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
F + A++A ++NG K L V A + +E + + + + M NQ
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAYLTNEYMQRMASVRAVPNQ 395
>gi|354491615|ref|XP_003507950.1| PREDICTED: ELAV-like protein 2 isoform 3 [Cricetulus griseus]
Length = 356
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRN 58
++P DSG +T L++ +LP + Q+ L +F G VR G+
Sbjct: 36 SSPVDSGKTEDSKTN----LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 91
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 92 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 125
>gi|334118436|ref|ZP_08492525.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
gi|333459443|gb|EGK88056.1| RNP-1 like RNA-binding protein [Microcoleus vaginatus FGP-2]
Length = 136
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSA----GRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ LS+ F YG A GR+R FV+ E + A
Sbjct: 33 MSIYVGNLSYEVTQEHLSQTFGEYGTVKRIQLPADRETGRMRGFAFVEMSTEAEETAAIE 92
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP EE
Sbjct: 93 ALDGAEWMGRDLKVNKA-KPREE 114
>gi|170060753|ref|XP_001865940.1| RNA-binding motif protein [Culex quinquefasciatus]
gi|167879121|gb|EDS42504.1| RNA-binding motif protein [Culex quinquefasciatus]
Length = 137
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ + LP + + L +FS YG + VR G+ + F+ F ++ L
Sbjct: 36 IFVGGLPSELTEGDLLAVFSQYGEIVNINLVRDRKTGKSKGFGFICFEDQRSTVLTVDNL 95
Query: 78 NGLRFLGKVLSVERAS--KPNEENK 100
NG++ LG+ L V+ S KP +++K
Sbjct: 96 NGIKLLGRTLRVDHVSDYKPPKDDK 120
>gi|357167535|ref|XP_003581210.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like
[Brachypodium distachyon]
Length = 137
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L I L +DTL+ F+ YG A+ V R + FV F +E A++A+ ++
Sbjct: 38 LFIGGLSQFATEDTLAEAFARYGQVLEATIVTDKMTNRSKGFGFVKFASEEEANKARDEM 97
Query: 78 NGLRFLGKVLSVERA 92
NG G+V+ V+ A
Sbjct: 98 NGKVLNGRVIYVDIA 112
>gi|350423156|ref|XP_003493401.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Bombus
impatiens]
Length = 139
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
+ I LP + + + +FS YG + +R + G+ + F+ + N+ A L
Sbjct: 36 IFIGGLPYDLTEGDVITVFSQYGEVVNINLIRDKNTGKQKGYGFLCYENQKSTVLAVDNL 95
Query: 78 NGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRN 120
NG++ LG+ + V+ + K+ + ++ KE +N
Sbjct: 96 NGIKILGRTIRVDHVANYKAPKDSKNVDEETKRLRKEGCAPKN 138
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPCS--AGRLRNCVFVDFGNEPLAS 71
+ + + IK+ D + + L +FS YG + SV+ + G+ + FV F A+
Sbjct: 192 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDAN 251
Query: 72 QAQMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
+A ++NG GK++ V RA K E + FE +K+ ++R Q
Sbjct: 252 KAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFE-----QLKQERISRYQ 298
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 154 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 213
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 214 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 251
>gi|333379577|ref|ZP_08471298.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
gi|332884970|gb|EGK05223.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
Length = 99
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ + I L + L+ F YG A + S R + FV+ N A++A
Sbjct: 1 MNIFIAGLSYDVNDADLNTFFKEYGVINSAKVIMDRSTSRSKGYGFVEMDNNEDANKAIS 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKH 103
+LNG+ + G+ +SV A E N + +
Sbjct: 61 KLNGVEYDGRTISVSEARPRQERNNNSY 88
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 284 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 343
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSM 112
F + A++A ++NG K L V A + +E + H Q + M
Sbjct: 344 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAHLTNQYMQRM 390
>gi|195051457|ref|XP_001993098.1| GH13638 [Drosophila grimshawi]
gi|193900157|gb|EDV99023.1| GH13638 [Drosophila grimshawi]
Length = 726
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD + +F +G +R G+ FV++ + A +A L
Sbjct: 115 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 174
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 175 NGLRLQNKTIKVSIA-RPSSE 194
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>gi|344248615|gb|EGW04719.1| ELAV-like protein 2 [Cricetulus griseus]
Length = 347
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRN 58
++P DSG +T L++ +LP + Q+ L +F G VR G+
Sbjct: 26 SSPVDSGKTEDSKTN----LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,628,996,816
Number of Sequences: 23463169
Number of extensions: 52963059
Number of successful extensions: 149243
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 1543
Number of HSP's that attempted gapping in prelim test: 148220
Number of HSP's gapped (non-prelim): 2273
length of query: 121
length of database: 8,064,228,071
effective HSP length: 88
effective length of query: 33
effective length of database: 5,999,469,199
effective search space: 197982483567
effective search space used: 197982483567
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)