BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043634
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3MHP0|RBM40_BOVIN RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1
Length = 516
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRDLSDKGRLKHTAFATFPNEKTAVKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>sp|Q4G055|RBM40_RAT RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=2 SV=2
Length = 515
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>sp|Q3UZ01|RBM40_MOUSE RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2
Length = 514
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>sp|Q5R6C7|RBM40_PONAB RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1
Length = 517
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>sp|Q96LT9|RBM40_HUMAN RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1
Length = 517
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79
TLL++HLP + + + ++GA SVR S GRL++ F F NE A +A +L+
Sbjct: 28 TLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQ 87
Query: 80 LRFLGKVLSVERA 92
L+ LG L VE A
Sbjct: 88 LKLLGHTLVVEFA 100
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC----SAGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L ++ QD L+++FS YG+ + GR+R FV+ + A
Sbjct: 1 MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+VL V +A +P EE
Sbjct: 61 ALDGAEWMGRVLKVNKA-RPREE 82
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+++ + +L + Q+ +S +F+ YG+ V P GRLR FV+ G++ + A
Sbjct: 1 MSIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIE 60
Query: 76 QLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 61 GLDGAEWMGRDLKVNKA-KPKED 82
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ +K++ Q+ +F YG ++ + S G+LR FV+F + A++A
Sbjct: 218 FTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 76 QLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSISSM 112
+LN L F G+ L V RA K E + K +EA + +
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKL 316
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
+ + +K+LP I D L + F YG ++ V +G R+ FV+F + A+ A
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSIS 110
++NG+ VL V RA K + EE + FE + IS
Sbjct: 297 EKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERIS 334
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYGASSVRPC-----SAGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L D++ + L +FS YG +V C S G R FV + N A A +
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYG--NVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 401
Query: 77 LNGLRFLGKVLSVERASKPNEENKH 101
+NG K L V A + E H
Sbjct: 402 MNGKMIGRKPLYVALAQRKEERQAH 426
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + + + +F+ +G +SS+ G+ R FV+F A+QA
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEA 332
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQA 73
N + +K++ + D +F YG +S R G+ R FV+F + AS+A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 74 QMQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LN F G+ L V RA K + EE K +EA
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEA 334
>sp|Q8JZV4|RBM41_MOUSE RNA-binding protein 41 OS=Mus musculus GN=Rbm41 PE=2 SV=1
Length = 413
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA Q
Sbjct: 310 VLYLKNLSPRVKERDLISLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQ 369
Query: 77 LNGLRFLGKVLSVERA 92
+NG + GK+L +E A
Sbjct: 370 INGYKLYGKILVIEFA 385
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + +F+ YG +SS+ S G+ R FV+F A++A
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEA 106
+LNG F G+ L V RA K + EE K +EA
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEA 337
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASS---VRPCSAGRLRNCVFVDFGNEPLASQ 72
T + +K+LP I +D L + F +G S V +G R FV+F A+
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 73 AQMQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSISSMKEA 115
A ++NG+ VL V RA K + EE + FE + I+ +++
Sbjct: 285 AVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKS 329
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEP 68
N+ E L +K+L D++ + L +FS YG +S V G R FV + N
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPE 383
Query: 69 LASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEA 106
A +A ++NG K L + A + +E++ H +A
Sbjct: 384 EALRALSEMNGKMIGRKPLYIALAQR--KEDRRAHLQA 419
>sp|A7TFW4|EIF3G_VANPO Eukaryotic translation initiation factor 3 subunit G
OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
70294) GN=TIF35 PE=3 SV=1
Length = 274
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 2 ATAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTL-SRIFSHYG----ASSVRPCSAGRL 56
A P ++ +E +++ TL I L + + TL + +G VR GR
Sbjct: 173 AKDPSSDAYRDSRERDDMATLKITQLNENADETTLREELLFPFGNIPRVVVVRNRETGRS 232
Query: 57 RNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
R FV F +E +A +A+ LNG F+ +L V+ SKP E+
Sbjct: 233 RGLAFVTFSSEEVAEKARRLLNGRGFMNLILQVD-WSKPKEK 273
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ N A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSVA-RPSSE 101
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ N A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSFA-RPSSE 101
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 11 QNKQETEN---LVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDF 64
Q + T N + +K+L ++ D L F YG ++ V G+ + FV+F
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262
Query: 65 GNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAA 116
N A++A LNG +F K V RA K +E + + ++KEAA
Sbjct: 263 ENADDAARAVESLNGHKFDDKEWYVGRAQKKSE--RETELRVRYEQNLKEAA 312
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78
+ IK+L ++I L FS +G + V S+G+ + FV + NE A +A +LN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 79 GL 80
G+
Sbjct: 186 GM 187
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 11 QNKQETE-----NLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFG 65
QN Q T+ N T+ + L + ++ L ++FS YG AG+ C FV FG
Sbjct: 268 QNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGK--RCGFVQFG 325
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNEE 98
A QA LNG + G+ + + P+ +
Sbjct: 326 TRASAEQALSSLNGTQLGGQSIRLSWGRSPSSK 358
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNC---VFVDFGNEPLASQA 73
E L +K+L + +D L F+ +G + R C FV+F N A +A
Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRA 257
Query: 74 QMQLNGLRFLGKVLSVERASKP-------NEENKHKHFEAQSISSMKEAAV 117
+NG +F K L V RA K E+ K KH E + I+ + V
Sbjct: 258 AETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYV 308
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + +K++ + ++FS YG ++++ + G+ + FV+F + A++A
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 75 MQLNGLRFLGKVLSVERASKPNE--ENKHKHFEAQSISSM 112
+LNG F + L V RA K E E K +E + +
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKL 328
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76
V L IK+L D+I + L F+ YG ++ V G + FV F + A++A +
Sbjct: 334 VNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTE 393
Query: 77 LNGLRFLGKVLSVERASK 94
N GK L V A +
Sbjct: 394 KNQQIVAGKPLYVAIAQR 411
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + +++L+ +F+ YG SV+ GR+R FV+ G++ + A
Sbjct: 1 MSIYVGNLSYDVTEESLNAVFAEYG--SVKRVQLPVDRETGRVRGFGFVEMGSDAEETAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>sp|Q96IZ5|RBM41_HUMAN RNA-binding protein 41 OS=Homo sapiens GN=RBM41 PE=1 SV=2
Length = 413
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQ 76
L +K+L + + L +F+ + P GR+R F+ F N+ +A QA
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 369
Query: 77 LNGLRFLGKVLSVE 90
+NG + GK+L +E
Sbjct: 370 VNGYKLHGKILVIE 383
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG---ASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74
N + IK+L I + S +F +G + S+ + R FV++ N A +A
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 75 MQLNGLRFLGKVLSVERASKPN--EENKHKHFEAQSISSM 112
+LN + GK L V RA K + EE K +E + M
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKM 358
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 11 QNKQETENLVTLLIKHLPDAIPQDTLSRIFSH----YGASSVRPCSAGRLRNCVFVDFGN 66
Q +ETE T+ + L +I + L + F H GA + R R +VDF N
Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFEN 218
Query: 67 EPLASQAQMQLNGLRFLGKVLSVERA-SKP 95
+ A +A ++ G G+ ++ + + SKP
Sbjct: 219 KSYAEKAIQEMQGKEIDGRPINCDMSTSKP 248
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L IFS +G + V ++GR R FV++GN A +A
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG G+++ V RA K
Sbjct: 250 EMNGKEVNGRMVYVGRAQK 268
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L IFS +G + V +GR R FV++GN A +A
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG G+++ V RA K
Sbjct: 250 EMNGKEVNGRMIYVGRAQK 268
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASS--VRPCS--AGRLRNCVFVDFGNEPLASQAQM 75
+T+ + +L + L +F+ YG V P GR+R FV+ + A
Sbjct: 1 MTIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAIT 60
Query: 76 QLNGLRFLGKVLSVERASKPNEENKHKHF 104
+L+G ++G+ L V +A KP E+++ +
Sbjct: 61 ELDGAEWMGRQLRVNKA-KPREDDRRGSW 88
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + QD L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>sp|Q44560|RBPA_NOSS1 Putative RNA-binding protein RbpA OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpA PE=3 SV=3
Length = 102
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPC------SAGRLRNCVFVDFGNEPLASQA 73
+++ + +L + QDTLS +F+ YG +V+ G+ R FV+ G+E + A
Sbjct: 1 MSIYVGNLSYEVTQDTLSAVFAEYG--TVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAA 58
Query: 74 QMQLNGLRFLGKVLSVERASKPNEE 98
L+G ++G+ L V +A KP E+
Sbjct: 59 IEALDGAEWMGRDLKVNKA-KPRED 82
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQAQM 75
+ IK+ + + L IFS +G + V GR R FV++GN A +A
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 76 QLNGLRFLGKVLSVERASK 94
++NG G+++ V RA K
Sbjct: 250 EMNGKEVNGRMIYVGRAQK 268
>sp|Q99181|HSH49_YEAST Protein HSH49 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HSH49 PE=1 SV=1
Length = 213
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRP----CSAGRLRNCVFVDFGNEPLASQAQ 74
+ L IK+L D+I D L +IF+ +G P S G+L+ C +V F + A A
Sbjct: 107 IAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFYLSNGKLK-CAYVYFEDFEKADLAI 165
Query: 75 MQLNGLRFLGKVLSVERASKPNEENKHKH 103
LN ++V+ A K N + K+
Sbjct: 166 KSLNNQLVANNRITVDYAFKENGKGNAKY 194
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 22 LLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77
L++ +LP + Q+ L +FS G A +R AG FV++ A +A L
Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81
Query: 78 NGLRFLGKVLSVERASKPNEE 98
NGLR K + V A +P+ E
Sbjct: 82 NGLRLQSKTIKVSYA-RPSSE 101
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ +V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAVTRNQ 121
F + A++A ++NG K L V A + +E + + + + M NQ
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAYLTNEYMQRMASVRAVPNQ 395
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 21 TLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCV---------FVDFGNEPLAS 71
TL IK+L + ++TL +FS GA ++ C+ + +N FV++ A
Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 780
Query: 72 QAQMQLNGLRFLGKVLSV---ERASKP 95
+A QL G G L V ERA+KP
Sbjct: 781 KALKQLQGHTVDGHKLEVRISERATKP 807
>sp|Q8AIH9|VPR_SIVTN Protein Vpr OS=Simian immunodeficiency virus (isolate TAN1) PE=3
SV=1
Length = 83
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 1 MATAPFDSGPQNKQETENLVTLL-------IKHLPDAIPQDTLSRIFSHYGAS 46
M AP D+GPQ + TE L+ +L +KH P I Q + +F+ YG S
Sbjct: 1 MEQAPNDNGPQREPYTEWLLDILEEIKQEAVKHFPRPILQGVGNWVFTIYGDS 53
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCSAGRLRNCVFVDFG 65
S P ++ + + IK+L +I L +FS +G S C + +V F
Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
+ A++A +NG+R + + V R P E
Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 185
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCSAGRLRNCVFVDFG 65
S P ++ + + IK+L +I L +FS +G S C + +V F
Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
+ A++A +NG+R + + V R P E
Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 185
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCSAGRLRNCVFVDFG 65
S P ++ + + IK+L +I L +FS +G S C + +V F
Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
+ A++A +NG+R + + V R P E
Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 185
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCSAGRLRNCVFVDFG 65
S P ++ + + IK+L +I L +FS +G S C + +V F
Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
+ A++A +NG+R + + V R P E
Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 185
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCSAGRLRNCVFVDFG 65
S P ++ + + IK+L +I L +FS +G S C + +V F
Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
+ A++A +NG+R + + V R P E
Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 185
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS-SVRPC--SAGRLRNCVFVDFGNEPLA 70
++ + +K++ D I + L +F YG + SV+ ++G+ + FV + A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 71 SQAQMQLNGLRFLGKVLSVERASKPNE 97
+A + L+G GKVL V RA K E
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 8 SGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG--ASSVRPCSAGRLRNCVFVDFG 65
S P ++ + + IK+L +I L +FS +G S C + +V F
Sbjct: 94 SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFD 153
Query: 66 NEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97
+ A++A +NG+R + + V R P E
Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 185
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + FS +G S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKH 101
F + A++A ++NG K L V A + E H
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAH 377
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 6 FDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVD 63
F+ Q++ V L +K+L D I + L + F+ +G+ S+ GR + FV
Sbjct: 280 FEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVC 339
Query: 64 FGNEPLASQAQMQLNGLRFLGKVLSVERASKPNEENKHKHFEAQSISSMKEAAV 117
F + A++A ++NG K L V A + +E + H Q + M V
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQR--KEERQAHLTNQYMQRMASVRV 391
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCSAGRLRNCVFVDFGNEPLASQA 73
+ + IK+ + + + L F YGA+ V G+ R FV F A +A
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKA 247
Query: 74 QMQLNGLRFLGKVLSVERASKPNEENKH--KHFEAQSISSMKEAAVTRNQ 121
+NG GK + V RA K E + FE MK+ +TR Q
Sbjct: 248 VDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFE-----QMKQDRITRYQ 292
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRN 58
++P DSG +T L++ +LP + Q+ L +F G VR G+
Sbjct: 26 SSPVDSGNTEDSKTN----LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 3 TAPFDSGPQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYG----ASSVRPCSAGRLRN 58
++P DSG +T L++ +LP + Q+ L +F G VR G+
Sbjct: 26 SSPVDSGNTEDSKTN----LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 59 CVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92
FV++ + A +A LNGLR K + V A
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,072,122
Number of Sequences: 539616
Number of extensions: 1287581
Number of successful extensions: 3622
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 3506
Number of HSP's gapped (non-prelim): 245
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)