Query 043634
Match_columns 121
No_of_seqs 125 out of 1023
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 9.3E-19 2E-23 112.9 11.8 76 17-92 32-111 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 8.5E-18 1.9E-22 121.7 12.1 74 19-92 269-346 (352)
3 KOG0125 Ataxin 2-binding prote 99.7 9.4E-18 2E-22 118.0 9.3 88 12-100 89-178 (376)
4 PF00076 RRM_1: RNA recognitio 99.7 2.5E-17 5.5E-22 93.2 8.4 67 22-88 1-70 (70)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.9E-17 4.2E-22 119.9 9.8 78 18-96 2-83 (352)
6 TIGR01659 sex-lethal sex-letha 99.7 7.3E-17 1.6E-21 117.0 10.3 76 17-92 105-184 (346)
7 KOG0107 Alternative splicing f 99.7 1.1E-16 2.4E-21 104.1 6.7 73 19-93 10-83 (195)
8 PLN03120 nucleic acid binding 99.7 8.4E-16 1.8E-20 106.4 9.5 74 19-93 4-78 (260)
9 TIGR01645 half-pint poly-U bin 99.6 2E-15 4.4E-20 115.5 10.6 76 18-93 203-282 (612)
10 KOG0117 Heterogeneous nuclear 99.6 2E-15 4.3E-20 110.0 9.6 74 19-92 83-161 (506)
11 KOG0122 Translation initiation 99.6 1.8E-15 3.9E-20 102.9 8.4 77 19-96 189-269 (270)
12 PLN03213 repressor of silencin 99.6 1.5E-15 3.2E-20 112.3 8.6 74 19-95 10-87 (759)
13 PF14259 RRM_6: RNA recognitio 99.6 2.8E-15 6E-20 85.2 7.9 67 22-88 1-70 (70)
14 KOG0114 Predicted RNA-binding 99.6 7.8E-15 1.7E-19 88.1 9.5 74 17-92 16-92 (124)
15 KOG0126 Predicted RNA-binding 99.6 4.5E-17 9.8E-22 106.5 -0.2 82 12-93 28-113 (219)
16 TIGR01659 sex-lethal sex-letha 99.6 4.7E-15 1E-19 107.6 9.9 76 18-93 192-273 (346)
17 TIGR01645 half-pint poly-U bin 99.6 2.7E-15 5.9E-20 114.8 8.7 76 17-92 105-184 (612)
18 KOG0149 Predicted RNA-binding 99.6 1.4E-15 3.1E-20 102.9 6.1 77 16-93 9-89 (247)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.6 9.9E-15 2.1E-19 110.4 11.1 76 18-93 294-373 (509)
20 TIGR01648 hnRNP-R-Q heterogene 99.6 5.9E-15 1.3E-19 112.6 9.8 74 19-92 58-135 (578)
21 PLN03121 nucleic acid binding 99.6 1.5E-14 3.3E-19 98.9 9.8 73 19-92 5-78 (243)
22 TIGR01628 PABP-1234 polyadenyl 99.6 9.3E-15 2E-19 111.9 9.7 73 21-93 2-78 (562)
23 KOG0145 RNA-binding protein EL 99.6 1.5E-14 3.3E-19 99.5 8.7 80 18-98 40-123 (360)
24 TIGR01622 SF-CC1 splicing fact 99.6 1.8E-14 3.9E-19 107.8 9.8 75 19-93 186-264 (457)
25 TIGR01628 PABP-1234 polyadenyl 99.6 1.7E-14 3.8E-19 110.4 9.7 76 18-93 284-362 (562)
26 KOG0130 RNA-binding protein RB 99.6 1E-14 2.2E-19 91.5 6.9 85 13-97 66-154 (170)
27 KOG4207 Predicted splicing fac 99.6 1.3E-14 2.8E-19 96.9 7.2 82 13-94 7-92 (256)
28 smart00362 RRM_2 RNA recogniti 99.6 5.3E-14 1.1E-18 78.9 8.8 70 21-90 1-72 (72)
29 KOG0121 Nuclear cap-binding pr 99.5 2.2E-14 4.9E-19 89.2 6.2 74 17-92 34-113 (153)
30 KOG0148 Apoptosis-promoting RN 99.5 7.2E-14 1.6E-18 96.5 8.8 77 14-93 159-236 (321)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.6E-13 3.4E-18 103.7 11.5 75 17-93 273-349 (481)
32 TIGR01648 hnRNP-R-Q heterogene 99.5 1.6E-13 3.5E-18 104.9 10.6 72 19-96 233-307 (578)
33 KOG0113 U1 small nuclear ribon 99.5 2E-13 4.4E-18 95.3 10.1 77 16-92 98-178 (335)
34 TIGR01622 SF-CC1 splicing fact 99.5 1.6E-13 3.6E-18 102.6 10.4 74 18-92 88-165 (457)
35 COG0724 RNA-binding proteins ( 99.5 1.9E-13 4.2E-18 94.1 9.3 74 19-92 115-192 (306)
36 smart00360 RRM RNA recognition 99.5 2.4E-13 5.2E-18 75.9 7.9 67 24-90 1-71 (71)
37 KOG0108 mRNA cleavage and poly 99.5 9.2E-14 2E-18 102.9 7.8 74 20-93 19-96 (435)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2E-13 4.4E-18 103.1 9.4 73 18-93 1-76 (481)
39 KOG0105 Alternative splicing f 99.5 9.2E-14 2E-18 91.5 6.3 75 17-93 4-81 (241)
40 KOG0111 Cyclophilin-type pepti 99.5 4.8E-14 1E-18 95.0 4.6 77 17-93 8-88 (298)
41 KOG0148 Apoptosis-promoting RN 99.5 2.9E-13 6.2E-18 93.6 8.0 78 16-93 59-140 (321)
42 KOG0131 Splicing factor 3b, su 99.5 2E-13 4.4E-18 89.4 6.3 76 17-92 7-86 (203)
43 cd00590 RRM RRM (RNA recogniti 99.5 1.5E-12 3.2E-17 73.3 9.1 71 21-91 1-74 (74)
44 KOG0117 Heterogeneous nuclear 99.4 3E-13 6.6E-18 98.7 7.4 74 19-98 259-333 (506)
45 KOG4206 Spliceosomal protein s 99.4 6.8E-13 1.5E-17 89.5 7.9 79 15-93 5-88 (221)
46 KOG0146 RNA-binding protein ET 99.4 3.8E-13 8.1E-18 93.1 5.2 83 15-98 281-367 (371)
47 TIGR01642 U2AF_lg U2 snRNP aux 99.4 2.4E-12 5.2E-17 97.5 9.6 75 17-92 173-257 (509)
48 KOG0144 RNA-binding protein CU 99.4 4.6E-13 9.9E-18 97.5 5.4 80 19-99 124-209 (510)
49 KOG0109 RNA-binding protein LA 99.4 9.8E-13 2.1E-17 91.7 6.0 68 20-92 3-71 (346)
50 KOG0127 Nucleolar protein fibr 99.4 2E-12 4.4E-17 96.6 7.9 75 19-93 117-194 (678)
51 PF13893 RRM_5: RNA recognitio 99.4 6.5E-12 1.4E-16 68.4 7.8 55 36-92 1-56 (56)
52 KOG0131 Splicing factor 3b, su 99.3 3.8E-12 8.3E-17 83.5 6.3 81 19-99 96-181 (203)
53 KOG0144 RNA-binding protein CU 99.3 8.2E-12 1.8E-16 91.1 8.1 75 19-93 34-115 (510)
54 KOG0124 Polypyrimidine tract-b 99.3 1.7E-12 3.8E-17 93.2 4.3 74 19-92 113-190 (544)
55 KOG0147 Transcriptional coacti 99.3 6E-12 1.3E-16 93.8 5.9 73 20-92 279-355 (549)
56 KOG0127 Nucleolar protein fibr 99.3 2.5E-11 5.3E-16 90.9 8.8 74 19-92 292-375 (678)
57 KOG0145 RNA-binding protein EL 99.3 5.9E-11 1.3E-15 82.1 8.9 77 16-92 275-355 (360)
58 smart00361 RRM_1 RNA recogniti 99.2 7.2E-11 1.6E-15 67.2 7.2 57 33-89 2-69 (70)
59 KOG0132 RNA polymerase II C-te 99.2 6.7E-11 1.4E-15 91.4 8.9 77 19-98 421-498 (894)
60 KOG0123 Polyadenylate-binding 99.2 5.6E-11 1.2E-15 87.1 7.9 71 20-92 77-150 (369)
61 KOG4212 RNA-binding protein hn 99.2 9.1E-11 2E-15 86.0 8.4 74 19-92 44-121 (608)
62 KOG1457 RNA binding protein (c 99.2 4.1E-10 8.9E-15 76.3 10.4 79 19-98 34-120 (284)
63 KOG0415 Predicted peptidyl pro 99.2 6.7E-11 1.5E-15 84.7 6.4 78 16-93 236-317 (479)
64 KOG0110 RNA-binding protein (R 99.2 4E-11 8.6E-16 91.8 5.2 75 19-93 613-691 (725)
65 KOG0153 Predicted RNA-binding 99.2 3E-10 6.5E-15 81.0 8.8 81 12-95 221-302 (377)
66 KOG0146 RNA-binding protein ET 99.1 9.7E-11 2.1E-15 81.3 5.8 75 19-93 19-99 (371)
67 KOG0109 RNA-binding protein LA 99.1 1.1E-10 2.5E-15 81.6 4.6 72 16-92 75-147 (346)
68 KOG4661 Hsp27-ERE-TATA-binding 99.1 4.1E-10 8.8E-15 85.1 7.5 75 19-93 405-483 (940)
69 KOG0123 Polyadenylate-binding 99.1 6E-10 1.3E-14 81.7 7.3 70 20-93 2-73 (369)
70 KOG4208 Nucleolar RNA-binding 99.0 1.1E-09 2.5E-14 73.2 7.4 79 14-92 44-127 (214)
71 KOG0124 Polypyrimidine tract-b 99.0 8.4E-10 1.8E-14 79.6 6.6 77 19-95 210-290 (544)
72 KOG4212 RNA-binding protein hn 99.0 1E-09 2.2E-14 80.6 7.1 75 16-92 533-608 (608)
73 KOG0110 RNA-binding protein (R 99.0 1.4E-09 3E-14 83.5 7.4 74 20-93 516-596 (725)
74 KOG0533 RRM motif-containing p 99.0 2.7E-09 5.9E-14 73.8 8.2 76 19-94 83-161 (243)
75 KOG0151 Predicted splicing reg 99.0 2.7E-09 5.8E-14 82.1 8.1 75 19-93 174-255 (877)
76 KOG1548 Transcription elongati 99.0 3.9E-09 8.4E-14 75.4 8.1 76 18-93 133-219 (382)
77 KOG4660 Protein Mei2, essentia 98.8 5.5E-09 1.2E-13 78.4 5.3 71 16-88 72-143 (549)
78 KOG0106 Alternative splicing f 98.8 5E-09 1.1E-13 71.2 4.6 70 20-93 2-71 (216)
79 KOG4205 RNA-binding protein mu 98.8 3.7E-09 8.1E-14 75.7 3.9 78 18-97 5-86 (311)
80 KOG0116 RasGAP SH3 binding pro 98.8 2.2E-08 4.8E-13 74.2 7.0 73 19-92 288-364 (419)
81 KOG0226 RNA-binding proteins [ 98.8 2.3E-08 4.9E-13 69.0 6.2 78 15-92 186-267 (290)
82 PF04059 RRM_2: RNA recognitio 98.7 2E-07 4.3E-12 56.1 8.5 76 19-94 1-86 (97)
83 KOG4205 RNA-binding protein mu 98.7 2.1E-08 4.6E-13 71.8 4.8 78 19-98 97-178 (311)
84 KOG4211 Splicing factor hnRNP- 98.5 3.3E-07 7.1E-12 68.3 7.2 76 16-92 7-83 (510)
85 KOG0120 Splicing factor U2AF, 98.5 1.3E-07 2.9E-12 71.2 5.1 76 18-93 288-367 (500)
86 KOG4209 Splicing factor RNPS1, 98.5 2.1E-07 4.5E-12 64.4 5.4 77 16-93 98-178 (231)
87 PF11608 Limkain-b1: Limkain b 98.5 6E-07 1.3E-11 52.3 6.3 70 20-94 3-76 (90)
88 KOG4454 RNA binding protein (R 98.5 4.9E-08 1.1E-12 66.2 1.8 75 17-92 7-84 (267)
89 KOG4206 Spliceosomal protein s 98.4 3.8E-06 8.2E-11 57.1 9.3 77 14-92 141-219 (221)
90 KOG1457 RNA binding protein (c 98.4 5.3E-07 1.1E-11 61.5 4.1 64 19-83 210-274 (284)
91 KOG1190 Polypyrimidine tract-b 98.4 3.9E-06 8.5E-11 61.6 8.8 75 19-95 297-373 (492)
92 KOG4211 Splicing factor hnRNP- 98.2 1.1E-05 2.3E-10 60.4 8.4 75 17-92 101-179 (510)
93 KOG4849 mRNA cleavage factor I 98.2 2.5E-06 5.4E-11 61.6 4.8 74 19-92 80-159 (498)
94 KOG1995 Conserved Zn-finger pr 98.1 8E-06 1.7E-10 58.9 5.5 78 16-93 63-152 (351)
95 KOG0106 Alternative splicing f 98.1 5.3E-06 1.1E-10 56.6 4.2 72 17-92 97-168 (216)
96 KOG1456 Heterogeneous nuclear 98.1 6E-05 1.3E-09 55.1 9.7 78 14-93 282-361 (494)
97 PF08777 RRM_3: RNA binding mo 98.0 1.5E-05 3.2E-10 48.8 5.3 72 19-92 1-77 (105)
98 KOG0147 Transcriptional coacti 98.0 4.1E-06 9E-11 63.2 2.6 73 19-92 179-255 (549)
99 KOG4307 RNA binding protein RB 97.8 0.00012 2.5E-09 57.3 7.7 72 20-91 868-943 (944)
100 KOG4210 Nuclear localization s 97.8 2.6E-05 5.6E-10 55.6 3.6 83 15-99 180-267 (285)
101 COG5175 MOT2 Transcriptional r 97.7 0.00013 2.7E-09 52.8 6.4 74 19-92 114-200 (480)
102 KOG1190 Polypyrimidine tract-b 97.7 0.0001 2.2E-09 54.4 6.0 75 17-92 412-488 (492)
103 KOG1365 RNA-binding protein Fu 97.7 0.0001 2.2E-09 54.1 5.8 74 19-92 280-359 (508)
104 KOG0129 Predicted RNA-binding 97.7 0.00038 8.2E-09 52.6 8.7 59 19-77 259-326 (520)
105 KOG2416 Acinus (induces apopto 97.7 8E-05 1.7E-09 57.1 5.0 78 15-93 440-520 (718)
106 KOG3152 TBP-binding protein, a 97.5 9.5E-05 2.1E-09 51.4 2.9 69 18-86 73-157 (278)
107 KOG1456 Heterogeneous nuclear 97.5 0.00083 1.8E-08 49.3 7.7 78 15-95 116-198 (494)
108 KOG2193 IGF-II mRNA-binding pr 97.5 0.00013 2.8E-09 54.1 3.4 70 20-92 2-73 (584)
109 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00058 1.3E-08 36.6 4.9 52 20-74 2-53 (53)
110 KOG2314 Translation initiation 97.4 0.0012 2.7E-08 50.7 8.2 74 19-92 58-141 (698)
111 PF08675 RNA_bind: RNA binding 97.4 0.0012 2.6E-08 38.5 6.2 55 19-78 9-63 (87)
112 PF08952 DUF1866: Domain of un 97.3 0.0014 3E-08 42.2 6.0 57 35-97 52-109 (146)
113 KOG1548 Transcription elongati 97.2 0.0019 4E-08 46.9 7.0 73 19-92 265-349 (382)
114 PF10309 DUF2414: Protein of u 97.2 0.0042 9.2E-08 34.3 6.7 54 19-77 5-62 (62)
115 KOG0112 Large RNA-binding prot 97.2 0.0007 1.5E-08 54.3 4.8 77 15-93 451-529 (975)
116 KOG0120 Splicing factor U2AF, 97.0 0.0031 6.6E-08 48.2 6.9 58 35-92 425-489 (500)
117 KOG0129 Predicted RNA-binding 97.0 0.0028 6.2E-08 48.1 6.6 62 13-76 364-432 (520)
118 KOG1855 Predicted RNA-binding 96.9 0.0022 4.7E-08 47.8 4.7 63 17-79 229-308 (484)
119 KOG4307 RNA binding protein RB 96.8 0.0061 1.3E-07 48.1 6.9 69 21-92 4-74 (944)
120 KOG1365 RNA-binding protein Fu 96.7 0.0074 1.6E-07 44.6 6.2 69 19-88 161-236 (508)
121 KOG0128 RNA-binding protein SA 96.6 0.0014 3E-08 52.3 2.0 74 19-92 736-812 (881)
122 KOG2202 U2 snRNP splicing fact 96.5 0.0022 4.7E-08 44.8 2.6 59 34-92 83-145 (260)
123 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.018 4E-07 34.9 6.3 72 19-92 6-89 (100)
124 KOG0105 Alternative splicing f 96.2 0.041 9E-07 37.0 7.2 63 18-83 114-176 (241)
125 KOG2253 U1 snRNP complex, subu 96.1 0.007 1.5E-07 47.3 3.5 72 15-91 36-107 (668)
126 KOG4676 Splicing factor, argin 96.1 0.018 3.8E-07 42.7 5.3 73 19-92 7-86 (479)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0063 1.4E-07 40.6 2.8 75 18-92 6-95 (176)
128 KOG0128 RNA-binding protein SA 96.0 0.00042 9.1E-09 55.1 -3.4 64 20-83 668-735 (881)
129 KOG0115 RNA-binding protein p5 95.9 0.013 2.9E-07 41.0 4.1 59 20-78 32-93 (275)
130 KOG1996 mRNA splicing factor [ 95.9 0.037 8E-07 39.7 6.2 59 34-92 301-364 (378)
131 KOG4410 5-formyltetrahydrofola 95.6 0.052 1.1E-06 38.8 5.8 49 19-68 330-378 (396)
132 PF04847 Calcipressin: Calcipr 95.3 0.095 2.1E-06 35.2 6.1 58 32-92 8-68 (184)
133 PF03880 DbpA: DbpA RNA bindin 95.1 0.21 4.5E-06 28.3 6.4 68 22-92 3-74 (74)
134 PF07576 BRAP2: BRCA1-associat 94.9 0.47 1E-05 29.2 8.0 66 19-84 12-81 (110)
135 KOG0112 Large RNA-binding prot 94.5 0.0083 1.8E-07 48.4 -0.4 74 19-92 372-448 (975)
136 KOG4660 Protein Mei2, essentia 93.9 0.084 1.8E-06 40.7 3.8 44 53-96 427-474 (549)
137 KOG2135 Proteins containing th 93.7 0.076 1.7E-06 40.3 3.1 72 20-95 373-445 (526)
138 PF15023 DUF4523: Protein of u 93.6 0.82 1.8E-05 29.6 7.3 71 16-91 83-158 (166)
139 KOG2591 c-Mpl binding protein, 93.5 0.16 3.5E-06 39.5 4.6 67 18-88 174-245 (684)
140 KOG2068 MOT2 transcription fac 93.2 0.029 6.3E-07 40.6 0.4 74 19-92 77-160 (327)
141 KOG4285 Mitotic phosphoprotein 91.8 0.59 1.3E-05 33.8 5.4 69 20-92 198-267 (350)
142 KOG0804 Cytoplasmic Zn-finger 90.6 1.9 4.1E-05 32.9 7.2 66 19-84 74-142 (493)
143 KOG4483 Uncharacterized conser 89.9 1.6 3.4E-05 33.0 6.2 55 18-76 390-446 (528)
144 KOG2193 IGF-II mRNA-binding pr 89.6 0.014 3E-07 43.8 -4.5 74 19-92 80-154 (584)
145 PF11767 SET_assoc: Histone ly 88.7 2.8 6E-05 23.4 7.0 55 30-89 11-65 (66)
146 KOG4210 Nuclear localization s 88.7 0.35 7.6E-06 34.7 2.2 70 19-88 88-161 (285)
147 KOG4676 Splicing factor, argin 88.7 0.045 9.8E-07 40.7 -2.3 65 19-86 151-217 (479)
148 KOG4574 RNA-binding protein (c 87.3 0.52 1.1E-05 38.5 2.5 70 21-93 300-372 (1007)
149 PF03468 XS: XS domain; Inter 77.0 6.6 0.00014 24.4 4.2 56 19-74 8-74 (116)
150 PF09707 Cas_Cas2CT1978: CRISP 76.7 6.4 0.00014 23.1 3.8 51 16-66 22-73 (86)
151 KOG2318 Uncharacterized conser 73.6 36 0.00079 27.2 8.1 76 17-92 172-303 (650)
152 PRK11558 putative ssRNA endonu 72.8 7.3 0.00016 23.5 3.4 51 17-67 25-76 (97)
153 PF15513 DUF4651: Domain of un 71.9 7.9 0.00017 21.3 3.2 19 34-52 9-27 (62)
154 KOG4019 Calcineurin-mediated s 68.3 9.2 0.0002 25.8 3.5 71 19-92 10-87 (193)
155 TIGR01873 cas_CT1978 CRISPR-as 61.8 16 0.00034 21.6 3.3 50 17-66 23-74 (87)
156 PF07292 NID: Nmi/IFP 35 domai 61.1 4.6 0.0001 23.9 1.0 23 19-41 52-74 (88)
157 KOG2295 C2H2 Zn-finger protein 58.0 1.5 3.4E-05 34.2 -1.7 68 19-86 231-302 (648)
158 KOG4454 RNA binding protein (R 52.9 3.3 7.1E-05 28.9 -0.7 69 19-87 80-155 (267)
159 KOG1295 Nonsense-mediated deca 52.8 22 0.00047 26.7 3.5 65 19-83 7-78 (376)
160 PF02714 DUF221: Domain of unk 45.1 37 0.0008 24.4 3.7 31 60-92 1-31 (325)
161 PRK14548 50S ribosomal protein 42.6 69 0.0015 18.7 5.0 56 22-77 23-81 (84)
162 PF11823 DUF3343: Protein of u 41.1 51 0.0011 18.2 3.2 28 58-85 2-29 (73)
163 cd00027 BRCT Breast Cancer Sup 38.6 58 0.0013 16.6 3.2 26 20-45 2-27 (72)
164 PF11411 DNA_ligase_IV: DNA li 36.4 28 0.0006 17.0 1.3 16 29-44 19-34 (36)
165 KOG4008 rRNA processing protei 34.3 43 0.00094 23.7 2.5 27 19-45 40-66 (261)
166 PF14893 PNMA: PNMA 33.7 40 0.00086 25.0 2.3 52 15-68 14-73 (331)
167 TIGR03636 L23_arch archaeal ri 32.8 1E+02 0.0022 17.7 5.1 56 21-76 15-73 (77)
168 PTZ00380 microtubule-associate 32.5 99 0.0022 19.4 3.7 11 58-68 98-108 (121)
169 KOG2891 Surface glycoprotein [ 31.5 1.2E+02 0.0025 22.2 4.3 27 19-45 149-187 (445)
170 PF15063 TC1: Thyroid cancer p 30.2 55 0.0012 18.8 2.0 27 19-45 25-51 (79)
171 PRK11901 hypothetical protein; 29.7 2.4E+02 0.0051 21.0 6.2 56 19-78 245-305 (327)
172 COG0030 KsgA Dimethyladenosine 28.5 57 0.0012 23.3 2.4 24 20-43 96-119 (259)
173 PF15407 Spo7_2_N: Sporulation 28.4 21 0.00046 19.9 0.2 22 19-40 27-48 (67)
174 PF14026 DUF4242: Protein of u 27.9 1.2E+02 0.0027 17.1 6.7 54 22-75 3-65 (77)
175 COG0150 PurM Phosphoribosylami 27.8 29 0.00063 25.8 0.8 46 34-80 276-322 (345)
176 KOG4365 Uncharacterized conser 27.8 7.8 0.00017 29.8 -2.1 71 20-93 4-80 (572)
177 PF03439 Spt5-NGN: Early trans 27.3 1.3E+02 0.0028 17.2 3.7 29 53-81 40-68 (84)
178 cd01611 GABARAP Ubiquitin doma 26.2 1.6E+02 0.0035 18.1 3.8 15 27-41 47-61 (112)
179 TIGR00755 ksgA dimethyladenosi 25.1 82 0.0018 21.9 2.7 25 21-45 96-120 (253)
180 PF05189 RTC_insert: RNA 3'-te 23.4 1.5E+02 0.0033 17.5 3.3 46 19-64 10-64 (103)
181 PF01984 dsDNA_bind: Double-st 23.3 83 0.0018 19.2 2.1 21 25-45 75-95 (107)
182 PF12993 DUF3877: Domain of un 22.8 1.7E+02 0.0038 19.6 3.7 26 29-54 107-133 (175)
183 PRK00523 hypothetical protein; 22.8 1.1E+02 0.0024 17.4 2.4 18 28-45 37-54 (72)
184 PF03672 UPF0154: Uncharacteri 22.4 1.2E+02 0.0025 16.9 2.4 18 28-45 29-46 (64)
185 PF00220 Hormone_4: Neurohypop 21.9 52 0.0011 10.9 0.6 6 23-28 2-7 (9)
186 KOG0635 Adenosine 5'-phosphosu 21.8 2.5E+02 0.0053 18.8 4.2 29 17-45 29-60 (207)
187 cd06257 DnaJ DnaJ domain or J- 21.5 1.2E+02 0.0025 15.1 2.3 19 25-43 6-24 (55)
188 PF10281 Ish1: Putative stress 20.3 1.2E+02 0.0026 14.4 2.0 16 30-45 3-18 (38)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=9.3e-19 Score=112.87 Aligned_cols=76 Identities=26% Similarity=0.398 Sum_probs=70.2
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..+++|||+|||+.+++++|+++|.+||. ..++++. +++++|||||+|.+.++|+.|+..||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34789999999999999999999999999 6666654 7888999999999999999999999999999999999999
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=8.5e-18 Score=121.74 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=69.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+..|||+|||+.+++++|.++|++||. .+++++. ++.++|||||+|.+.++|..|+..|||..|+|+.|+|.++
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 457999999999999999999999999 6777775 7889999999999999999999999999999999999998
No 3
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=9.4e-18 Score=117.99 Aligned_cols=88 Identities=22% Similarity=0.307 Sum_probs=77.3
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
+......++.|+|+|||+...+-||+.+|.+||. +.|++|. ...+||||||+|++.++|++|-.+|||..|.||+|.|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 3444455899999999999999999999999999 8888887 5567899999999999999999999999999999999
Q ss_pred EecCCCCcccc
Q 043634 90 ERASKPNEENK 100 (121)
Q Consensus 90 ~~a~~~~~~~~ 100 (121)
..+ .++..+.
T Consensus 169 n~A-TarV~n~ 178 (376)
T KOG0125|consen 169 NNA-TARVHNK 178 (376)
T ss_pred ecc-chhhccC
Confidence 999 6654443
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=2.5e-17 Score=93.18 Aligned_cols=67 Identities=28% Similarity=0.572 Sum_probs=61.4
Q ss_pred EEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 22 LLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 22 l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
|||+|||+.+++++|+++|++||. ..+.+.. .+..+++|||+|.+.++|+.|+..++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999 5565555 577889999999999999999999999999999885
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=1.9e-17 Score=119.91 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=71.7
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
+.++|||+|||..+++++|+++|+.||. ..++++. +|+++|||||+|.+.++|..||..|||..|.|+.|+|.++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a- 80 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA- 80 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee-
Confidence 4789999999999999999999999999 6777765 6889999999999999999999999999999999999998
Q ss_pred CCC
Q 043634 94 KPN 96 (121)
Q Consensus 94 ~~~ 96 (121)
.+.
T Consensus 81 ~~~ 83 (352)
T TIGR01661 81 RPS 83 (352)
T ss_pred ccc
Confidence 443
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=7.3e-17 Score=117.01 Aligned_cols=76 Identities=29% Similarity=0.436 Sum_probs=70.5
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++|||+|||+++++++|+++|..||. ..++++. ++.++|||||+|.+.++|..|+..|++..+.++.|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34899999999999999999999999999 6666664 7888999999999999999999999999999999999998
No 7
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.1e-16 Score=104.05 Aligned_cols=73 Identities=26% Similarity=0.371 Sum_probs=65.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.++||||||+..+++.+|+.+|..||. +.-++ .....|||||+|++..+|+.|+..|+|..|+|..|+|+.+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~--lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGP--LRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCc--ceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 899999999999999999999999999 43333 22457999999999999999999999999999999999984
No 8
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=8.4e-16 Score=106.40 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=67.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.++|||+|||+.+++++|+++|+.||. ..+.++..+..+|||||+|.+.++++.|+ .|+|..|.|+.|.|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 579999999999999999999999999 66777665556799999999999999999 599999999999999984
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=2e-15 Score=115.51 Aligned_cols=76 Identities=13% Similarity=0.293 Sum_probs=70.2
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..++|||+|||+.+++++|+++|+.||. .++++.. ++.++|||||+|.+.++|..|+..||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 3589999999999999999999999999 6676665 67789999999999999999999999999999999999994
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=2e-15 Score=109.97 Aligned_cols=74 Identities=26% Similarity=0.391 Sum_probs=69.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFL-GKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~-g~~l~v~~a 92 (121)
++.||||.||+++.|++|..+|.+.|. ..++++. +|.+||||||+|++.+.|..||+.||+.+|. |+.|.|..+
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 899999999999999999999999999 7778776 8999999999999999999999999999886 888888766
No 11
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.8e-15 Score=102.90 Aligned_cols=77 Identities=27% Similarity=0.463 Sum_probs=70.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
.++|-|.|||.++++++|+++|.+||. ..+-+.. +|.++|||||+|.++++|.+||..|||.-++.=.|+|+|+ +
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws-k 267 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS-K 267 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec-C
Confidence 688999999999999999999999999 5554444 9999999999999999999999999999999999999999 6
Q ss_pred CC
Q 043634 95 PN 96 (121)
Q Consensus 95 ~~ 96 (121)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 12
>PLN03213 repressor of silencing 3; Provisional
Probab=99.63 E-value=1.5e-15 Score=112.27 Aligned_cols=74 Identities=28% Similarity=0.423 Sum_probs=68.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCH--HHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNE--PLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~--~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
...||||||++.+++++|...|+.||. ..+.+++ +| ||||||+|... .++.+||..|||..++|+.|+|..| +
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA-K 86 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA-K 86 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec-c
Confidence 689999999999999999999999999 7777877 66 89999999987 6799999999999999999999999 4
Q ss_pred C
Q 043634 95 P 95 (121)
Q Consensus 95 ~ 95 (121)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=2.8e-15 Score=85.19 Aligned_cols=67 Identities=33% Similarity=0.538 Sum_probs=58.4
Q ss_pred EEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 22 LLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 22 l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
|||+|||+.+++++|..+|+.||. ..+++.. .+..+++|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999998 5566665 466789999999999999999999999999999874
No 14
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=7.8e-15 Score=88.09 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=67.5
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+....|||+|||+.+|.++..++|++||. ++-++ +...+|-|||.|++..+|..|++.|+|..++++.+.|.+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~--IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGT--IRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccc--eEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 33899999999999999999999999999 66555 5566899999999999999999999999999999999877
No 15
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=4.5e-17 Score=106.52 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=73.2
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVL 87 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l 87 (121)
....-..+..|||||||+..||.||.-.|++||+ ..|-+++ +|+++||||+.|+|..+..-|+..|||..|.|+.|
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 3444555899999999999999999999999999 6665555 99999999999999999999999999999999999
Q ss_pred EEEecC
Q 043634 88 SVERAS 93 (121)
Q Consensus 88 ~v~~a~ 93 (121)
+|.+..
T Consensus 108 rVDHv~ 113 (219)
T KOG0126|consen 108 RVDHVS 113 (219)
T ss_pred Eeeecc
Confidence 999873
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=4.7e-15 Score=107.60 Aligned_cols=76 Identities=30% Similarity=0.426 Sum_probs=67.9
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEe
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG--KVLSVER 91 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g--~~l~v~~ 91 (121)
..++|||+|||+.+++++|+++|++||. ..++++. ++..++||||+|.+.++|++||+.||+..+.+ +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 3688999999999999999999999999 5566654 77889999999999999999999999998876 6899998
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
+.
T Consensus 272 a~ 273 (346)
T TIGR01659 272 AE 273 (346)
T ss_pred CC
Confidence 83
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.61 E-value=2.7e-15 Score=114.79 Aligned_cols=76 Identities=22% Similarity=0.391 Sum_probs=69.8
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++|||+|||+.+++++|+++|.+||. .+++++. +|+++|||||+|.+.++|..|+..|||..|+|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34789999999999999999999999999 6666665 7889999999999999999999999999999999999865
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=102.89 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=66.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
...-++||||+|+|.+..++|+++|.+||+ ++..++. +|+++||+||+|.|.++|.+|++.-| -.|+||+..+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 344799999999999999999999999999 5444443 89999999999999999999986544 678999988888
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
|.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 74
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.60 E-value=9.9e-15 Score=110.39 Aligned_cols=76 Identities=20% Similarity=0.337 Sum_probs=69.6
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..++|||+|||..+++++|+++|..||. ..+.++. +|.++|||||+|.+.+.|..|+..|||..|+|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 3689999999999999999999999999 5555554 68889999999999999999999999999999999999984
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=5.9e-15 Score=112.60 Aligned_cols=74 Identities=24% Similarity=0.380 Sum_probs=66.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFL-GKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~-g~~l~v~~a 92 (121)
.++|||+|||+++++++|+.+|.+||. ..++++. +|.++|||||+|.+.++|+.||..||+..+. |+.|.|..+
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 799999999999999999999999999 6677765 7899999999999999999999999999885 777766655
No 21
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.5e-14 Score=98.92 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=67.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+.+|||+||++.+++++|+++|+.||. ..++++..+..+++|||+|.+...++.|+ .|+|..|.++.|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 689999999999999999999999999 77787776666789999999999999998 79999999999999876
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=9.3e-15 Score=111.93 Aligned_cols=73 Identities=26% Similarity=0.385 Sum_probs=68.3
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 21 TLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 21 ~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.|||+|||..+++++|+++|++||. .+|+++. +++++|||||+|.+.++|.+|+..+|+..+.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 6999999999999999999999999 6777776 68889999999999999999999999999999999999874
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.5e-14 Score=99.54 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=75.2
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..++|.|.-||.++++++|+.+|...|+ +++++++ +|++-||+||.|.++.+|++||..|||..+..+.|+|+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA- 118 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA- 118 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec-
Confidence 3789999999999999999999999999 8888888 8999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 043634 94 KPNEE 98 (121)
Q Consensus 94 ~~~~~ 98 (121)
+|..+
T Consensus 119 RPSs~ 123 (360)
T KOG0145|consen 119 RPSSD 123 (360)
T ss_pred cCChh
Confidence 77654
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=1.8e-14 Score=107.76 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=69.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.++|||+|||..+++++|+++|.+||. ..+.++. +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 689999999999999999999999999 5666665 56889999999999999999999999999999999999974
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=1.7e-14 Score=110.44 Aligned_cols=76 Identities=32% Similarity=0.415 Sum_probs=70.3
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..++|||+||+..+++++|+++|++||. .+++++. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4688999999999999999999999999 6666665 78889999999999999999999999999999999999993
No 26
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1e-14 Score=91.48 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=73.8
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
++.+-.+..|||.++...++++++.+.|+.||. ..+.+-. +|..+|||+|+|.+...|.+|+..+||..|+|+.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 444555899999999999999999999999999 3333322 899999999999999999999999999999999999
Q ss_pred EEecCCCCc
Q 043634 89 VERASKPNE 97 (121)
Q Consensus 89 v~~a~~~~~ 97 (121)
|.|++...+
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999974443
No 27
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=1.3e-14 Score=96.86 Aligned_cols=82 Identities=26% Similarity=0.373 Sum_probs=74.7
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
+++.+..+.|.|-||.+.++.++|..+|.+||. ..|-+.+ ++.++|||||-|.+..+|+.|+++|+|..|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 555666899999999999999999999999999 5666666 889999999999999999999999999999999999
Q ss_pred EEecCC
Q 043634 89 VERASK 94 (121)
Q Consensus 89 v~~a~~ 94 (121)
|+.|+.
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 999963
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=5.3e-14 Score=78.89 Aligned_cols=70 Identities=34% Similarity=0.598 Sum_probs=61.5
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 21 TLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 21 ~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
+|||+|||..++.++|+++|.+||. ..+.+.. .+.++++|||+|.+.+.|..|+..+++..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 4899999999999999999999999 4555554 35567999999999999999999999999999998873
No 29
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.2e-14 Score=89.15 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=65.2
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc------CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~------~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
..+++||||||++.++|++|.++|+.+|. |+.+. +....|||||+|...++|..|+.-++|+.++.+.|++.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~--irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGD--IRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccc--hheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34799999999999999999999999999 42222 44456999999999999999999999999999999998
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
+.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 76
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=7.2e-14 Score=96.48 Aligned_cols=77 Identities=19% Similarity=0.398 Sum_probs=68.9
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
++.+.+|+||||||+..+++++|++.|++||. .+||+... +||+||.|.+.+.|..||..+|+.+|.|+.++..|.
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 34555999999999999999999999999999 55666543 589999999999999999999999999999999998
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
+
T Consensus 236 K 236 (321)
T KOG0148|consen 236 K 236 (321)
T ss_pred c
Confidence 4
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.53 E-value=1.6e-13 Score=103.66 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=67.5
Q ss_pred CCccEEEecCCCC-CCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 17 ENLVTLLIKHLPD-AIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 17 ~~~~~l~V~nlp~-~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.++++|||+|||+ .+++++|+.+|+.||. ..++++.. .+|+|||+|.+.++|..|+..|||..|.|+.|+|.+++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3578999999998 6999999999999999 66666654 36899999999999999999999999999999999984
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=1.6e-13 Score=104.86 Aligned_cols=72 Identities=28% Similarity=0.489 Sum_probs=64.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhh--CC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHY--GA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKP 95 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~--G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 95 (121)
.++|||+|||..+++++|+++|++| |. ..+++ .++||||+|.+.++|.+|+..||+..|+|+.|+|.++ ++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~-----~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A-kp 306 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK-----IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA-KP 306 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe-----ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc-cC
Confidence 6789999999999999999999999 88 33433 2579999999999999999999999999999999999 55
Q ss_pred C
Q 043634 96 N 96 (121)
Q Consensus 96 ~ 96 (121)
.
T Consensus 307 ~ 307 (578)
T TIGR01648 307 V 307 (578)
T ss_pred C
Confidence 3
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2e-13 Score=95.28 Aligned_cols=77 Identities=21% Similarity=0.415 Sum_probs=71.5
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..|=++|||+-|+.+++|..|+..|..||. ..|+++. +|+++|||||+|....+...|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 355799999999999999999999999999 6777776 899999999999999999999999999999999999987
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
-
T Consensus 178 E 178 (335)
T KOG0113|consen 178 E 178 (335)
T ss_pred c
Confidence 6
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=1.6e-13 Score=102.61 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=67.8
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..++|||+|||..+++++|+++|.+||. ..++++. ++.++|||||+|.+.++|..|+. |+|..+.|+.|.|..+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 3689999999999999999999999999 6677765 68889999999999999999995 9999999999999876
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=1.9e-13 Score=94.10 Aligned_cols=74 Identities=32% Similarity=0.568 Sum_probs=68.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..+|||+|||..+++++|.++|..||. ..+.+.. ++..+|+|||+|.+.+++..|+..+++..+.|+.|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 599999999999999999999999999 5555554 6899999999999999999999999999999999999996
No 36
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=2.4e-13 Score=75.89 Aligned_cols=67 Identities=33% Similarity=0.580 Sum_probs=59.3
Q ss_pred ecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 24 IKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 24 V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
|+|||..+++++|+++|.+||. ..+.+.. ++.++|+|||+|.+.+.|..|+..+++..++|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999998 5555554 46778999999999999999999999999999998873
No 37
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.49 E-value=9.2e-14 Score=102.87 Aligned_cols=74 Identities=31% Similarity=0.457 Sum_probs=70.6
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
+.+||||||+.+++++|..+|+..|. .+++++. +|+.+||||++|.+.+++..|+..|||.++.|++|+|.++.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 89999999999999999999999999 7777776 89999999999999999999999999999999999999984
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.49 E-value=2e-13 Score=103.06 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=64.7
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHh--cCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL--NGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l--~g~~i~g~~l~v~~a~ 93 (121)
|+++|||+|||+.+++++|+++|++||. .++.++. .+++|||+|.+.++|..|+..+ ++..+.|+.|+|.++.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 4689999999999999999999999999 5555553 4689999999999999999865 7789999999999983
No 39
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=9.2e-14 Score=91.47 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=65.9
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
...+.|||+|||.++.+.+|+++|.+||. |+.|. ......||||+|++..+|+.||..-+|..++|..|+|+++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~--i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGR--IREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcc--eEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 34789999999999999999999999999 54444 22335799999999999999999999999999999999984
No 40
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.8e-14 Score=95.03 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=71.0
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++||||+|...+++.-|...|-+||. ..+.++. ++++||||||+|...++|.+||+.||+.+|.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34789999999999999999999999999 5566655 8899999999999999999999999999999999999999
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
+
T Consensus 88 k 88 (298)
T KOG0111|consen 88 K 88 (298)
T ss_pred C
Confidence 4
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.9e-13 Score=93.56 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=71.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
...=.-+||+.|...++.++|+..|.+||+ ...++++ +++++||+||.|...++|+.||..|||.-|++|.|+-.|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 333578999999999999999999999999 5566666 899999999999999999999999999999999999999
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
+.
T Consensus 139 AT 140 (321)
T KOG0148|consen 139 AT 140 (321)
T ss_pred cc
Confidence 94
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.46 E-value=2e-13 Score=89.40 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=70.2
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....+||||||+..++++.|.++|-+.|. ..+++.+ +...+||||++|.++++|+-|++.||...+-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34799999999999999999999999999 6677766 6778899999999999999999999999999999999988
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.45 E-value=1.5e-12 Score=73.27 Aligned_cols=71 Identities=34% Similarity=0.545 Sum_probs=61.9
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 21 TLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 21 ~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
+|+|+|||..+++++|+++|..+|. ..+.+.. .+..+++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999998 5555554 334578999999999999999999999999999998863
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=3e-13 Score=98.71 Aligned_cols=74 Identities=27% Similarity=0.496 Sum_probs=66.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCc
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~~~ 97 (121)
...|||+||+..+|++.|+.+|.+||. ..|+.+ +-||||+|.++++|.+|++.+||..|.|..|.|.+| +|..
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA-KP~~ 332 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA-KPVD 332 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEec-CChh
Confidence 689999999999999999999999999 444443 569999999999999999999999999999999999 6544
Q ss_pred c
Q 043634 98 E 98 (121)
Q Consensus 98 ~ 98 (121)
+
T Consensus 333 k 333 (506)
T KOG0117|consen 333 K 333 (506)
T ss_pred h
Confidence 4
No 45
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.43 E-value=6.8e-13 Score=89.46 Aligned_cols=79 Identities=30% Similarity=0.482 Sum_probs=71.9
Q ss_pred CCCCccEEEecCCCCCCCHHHHHH----HHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSR----IFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~----~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
+..+..+|||.||+..+..++|+. +|++||. +.|....+.+-+|-|||.|.+.+.|..|+..|+|..+-|+.++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445666999999999999999888 9999998 66677778889999999999999999999999999999999999
Q ss_pred EecC
Q 043634 90 ERAS 93 (121)
Q Consensus 90 ~~a~ 93 (121)
++|+
T Consensus 85 qyA~ 88 (221)
T KOG4206|consen 85 QYAK 88 (221)
T ss_pred eccc
Confidence 9994
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=3.8e-13 Score=93.08 Aligned_cols=83 Identities=27% Similarity=0.388 Sum_probs=72.9
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
+.+.+|+|||-.||.+..+.+|..+|-.||- .+.++.. +..+++|+||.|++..++.+||..|||+.|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 3445899999999999999999999999999 5544333 78899999999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 043634 91 RASKPNEE 98 (121)
Q Consensus 91 ~a~~~~~~ 98 (121)
.. +|+..
T Consensus 361 LK-RPkda 367 (371)
T KOG0146|consen 361 LK-RPKDA 367 (371)
T ss_pred hc-Ccccc
Confidence 88 66543
No 47
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.39 E-value=2.4e-12 Score=97.45 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=61.6
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC----------ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA----------SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV 86 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~----------~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~ 86 (121)
...++|||||||+.+++++|..+|..++. ..+..+..+..+|||||+|.+.++|..|+ .|+|..+.|+.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~ 251 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVF 251 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCce
Confidence 33689999999999999999999998622 11223334566899999999999999999 59999999999
Q ss_pred EEEEec
Q 043634 87 LSVERA 92 (121)
Q Consensus 87 l~v~~a 92 (121)
|+|...
T Consensus 252 l~v~r~ 257 (509)
T TIGR01642 252 LKIRRP 257 (509)
T ss_pred eEecCc
Confidence 999754
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=4.6e-13 Score=97.50 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=69.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCe-eCC--eEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLR-FLG--KVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~-i~g--~~l~v~~a 92 (121)
.++||||.|+..++|.+++.+|++||. +.+.+++ .+.+||||||.|...+.|..||+.|||.. +.| .+|.|+|+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 689999999999999999999999999 6777777 78899999999999999999999999964 444 68999999
Q ss_pred CCCCccc
Q 043634 93 SKPNEEN 99 (121)
Q Consensus 93 ~~~~~~~ 99 (121)
.+..++
T Consensus 204 -Dtqkdk 209 (510)
T KOG0144|consen 204 -DTQKDK 209 (510)
T ss_pred -ccCCCc
Confidence 444443
No 49
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=9.8e-13 Score=91.75 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=62.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+|||||||..+++.+|+.+|.+||. .++-++ +.||||..++...++.||..|||..|+|..|+|+-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 47999999999999999999999999 555555 359999999999999999999999999999999988
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2e-12 Score=96.56 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=69.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
...|.|+|||+.+...+|+.+|+.||. ..+.++. .|+-+|||||+|....+|..|+..+|+..|+|++|-|.||.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 688999999999999999999999999 6677776 55667999999999999999999999999999999999993
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=6.5e-12 Score=68.37 Aligned_cols=55 Identities=35% Similarity=0.538 Sum_probs=46.8
Q ss_pred HHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 36 LSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 36 L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
|.++|++||. ..+.+.... +++|||+|.+.++|..|+..|||..++|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999999 445554433 589999999999999999999999999999999885
No 52
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=3.8e-12 Score=83.50 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=71.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-cc-EEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SS-VRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~-~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
+.++||+||.+++.+..|.++|+.||. .. .++++ +|..+||||+.|.+.+.+.+|+..+||..++.+.+.|++++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 699999999999999999999999999 32 24444 78889999999999999999999999999999999999996
Q ss_pred CCCccc
Q 043634 94 KPNEEN 99 (121)
Q Consensus 94 ~~~~~~ 99 (121)
+...+.
T Consensus 176 k~~~kg 181 (203)
T KOG0131|consen 176 KKDTKG 181 (203)
T ss_pred ecCCCc
Confidence 554443
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=8.2e-12 Score=91.07 Aligned_cols=75 Identities=21% Similarity=0.429 Sum_probs=66.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCe-eC--CeEEEEEe
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLR-FL--GKVLSVER 91 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~-i~--g~~l~v~~ 91 (121)
.-++|||-||+.++|.||+.+|.+||. .+|-+++ ++.++|||||.|...++|.+|+..||... |- ...|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 689999999999999999999999999 6666666 88999999999999999999999998754 43 46889999
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
+.
T Consensus 114 Ad 115 (510)
T KOG0144|consen 114 AD 115 (510)
T ss_pred cc
Confidence 94
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.7e-12 Score=93.19 Aligned_cols=74 Identities=23% Similarity=0.414 Sum_probs=67.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.|.||||.|.+++.|+.|+..|.+||. .++-+-+ +++++|||||+|+-.+.|.-|++.|||..++|+.|+|.+-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 689999999999999999999999999 5554444 8999999999999999999999999999999999999743
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.29 E-value=6e-12 Score=93.83 Aligned_cols=73 Identities=30% Similarity=0.467 Sum_probs=66.6
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..||||||.+++++++|+.+|.+||. ..|.+.. +|.++||+||+|.+.++|..|+..|||++|-|+.|+|...
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 33999999999999999999999999 5555444 8999999999999999999999999999999999999876
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=2.5e-11 Score=90.87 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=65.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHh-----cC-CeeCCeEEE
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQL-----NG-LRFLGKVLS 88 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l-----~g-~~i~g~~l~ 88 (121)
..+|||+|||+++++++|...|++||. ....++. ++.++|+|||.|.+...+..||... .| ..|.|+.|.
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 699999999999999999999999999 4444444 8999999999999999999999876 23 678899999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|..+
T Consensus 372 v~~A 375 (678)
T KOG0127|consen 372 VTLA 375 (678)
T ss_pred eeec
Confidence 9988
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=5.9e-11 Score=82.06 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=71.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
...+..|||-||.+++.|.-|-++|++||. ..|++++ +.+-+||+||++.+.++|..||..|||..++++.|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 333899999999999999999999999999 7788887 577889999999999999999999999999999999987
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
.
T Consensus 355 K 355 (360)
T KOG0145|consen 355 K 355 (360)
T ss_pred e
Confidence 6
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=99.23 E-value=7.2e-11 Score=67.17 Aligned_cols=57 Identities=25% Similarity=0.448 Sum_probs=48.9
Q ss_pred HHHHHHHHh----hhCC-ccEE-E-cc--C--CCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 33 QDTLSRIFS----HYGA-SSVR-P-CS--A--GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 33 ~~~L~~~f~----~~G~-~~~~-~-~~--~--~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
+++|+++|. +||. .++. + +. + +.++|+|||+|.+.++|..|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888998 9999 5553 2 22 3 788999999999999999999999999999999876
No 59
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.23 E-value=6.7e-11 Score=91.41 Aligned_cols=77 Identities=19% Similarity=0.385 Sum_probs=68.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCc
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~~~ 97 (121)
++|||||.|+..+++.||..+|..||. .+|.++. +++||||.+....+|++|+.+|....+.++.|+|.|+.....
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 699999999999999999999999999 5555543 479999999999999999999999999999999999954443
Q ss_pred c
Q 043634 98 E 98 (121)
Q Consensus 98 ~ 98 (121)
+
T Consensus 498 k 498 (894)
T KOG0132|consen 498 K 498 (894)
T ss_pred c
Confidence 3
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=5.6e-11 Score=87.06 Aligned_cols=71 Identities=31% Similarity=0.468 Sum_probs=65.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..|||.||++.++..+|.++|+.||. +++++.. .| ++|| ||+|.+++.|..||+.+||..+.|++|.|...
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 33999999999999999999999999 8887777 45 7899 99999999999999999999999999999887
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.20 E-value=9.1e-11 Score=86.03 Aligned_cols=74 Identities=22% Similarity=0.336 Sum_probs=66.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHh-hhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFS-HYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~-~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.+||.|||+++...+|+++|. +.|+ ..|.++. +|+.+|||.|+|.+++.+++|++.||.+.+.|+.|.|+..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 45699999999999999999997 5677 5565555 8999999999999999999999999999999999999865
No 62
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.19 E-value=4.1e-10 Score=76.35 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=64.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCc----ccEEEEEeCCHHHHHHHHHHhcCCeeC---CeEEEEE
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRL----RNCVFVDFGNEPLASQAQMQLNGLRFL---GKVLSVE 90 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~----~g~afv~f~~~~~a~~ai~~l~g~~i~---g~~l~v~ 90 (121)
.++|||.+||.++...+|..+|..|.. +...+-.+++. +.+||++|.+...|.+|+..|||..++ +..|+++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 699999999999999999999999866 33322223332 369999999999999999999999887 7899999
Q ss_pred ecCCCCcc
Q 043634 91 RASKPNEE 98 (121)
Q Consensus 91 ~a~~~~~~ 98 (121)
++ +.+.+
T Consensus 114 lA-KSNtK 120 (284)
T KOG1457|consen 114 LA-KSNTK 120 (284)
T ss_pred eh-hcCcc
Confidence 99 44333
No 63
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.7e-11 Score=84.73 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=71.9
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
.+|-..|||.-|.+.+++++|+-+|+.||. .++.+++ +|.+-.||||+|.+.+++++|.-+|+..-|+++.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 445789999999999999999999999999 7777776 899999999999999999999999999999999999998
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
+.
T Consensus 316 SQ 317 (479)
T KOG0415|consen 316 SQ 317 (479)
T ss_pred hh
Confidence 73
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=4e-11 Score=91.76 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=69.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.++|+|+|||+..+..+++.+|..||. .+++++. .+.++|||||+|-+..+|.+|+..|.++.+.|+.|.++|++
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 689999999999999999999999999 6677776 45679999999999999999999999999999999999994
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=3e-10 Score=80.98 Aligned_cols=81 Identities=26% Similarity=0.411 Sum_probs=64.9
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEE
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL-NGLRFLGKVLSVE 90 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l-~g~~i~g~~l~v~ 90 (121)
.+++...-++|||++|-..+++.+|++.|.+||. ++.+..-..++||||+|.+.+.|+.|..+. +-..|+|++|+|.
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGe--irsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGE--IRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCC--eeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3444455799999999999999999999999999 444442223479999999999999777544 6678899999999
Q ss_pred ecCCC
Q 043634 91 RASKP 95 (121)
Q Consensus 91 ~a~~~ 95 (121)
|. ++
T Consensus 299 Wg-~~ 302 (377)
T KOG0153|consen 299 WG-RP 302 (377)
T ss_pred eC-CC
Confidence 99 55
No 66
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=9.7e-11 Score=81.28 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=67.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeC---CeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFL---GKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~---g~~l~v~~a 92 (121)
.++||||-|...-+|+|++.+|..||. .++.+++ .|.++||+||.|.+..+|..||..|||..-+ ...|.|+++
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA 98 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec
Confidence 799999999999999999999999999 7777777 7888999999999999999999999996544 367899999
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
.
T Consensus 99 D 99 (371)
T KOG0146|consen 99 D 99 (371)
T ss_pred c
Confidence 3
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=1.1e-10 Score=81.58 Aligned_cols=72 Identities=21% Similarity=0.339 Sum_probs=64.8
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....++|+||||.+.++..+|+..|.+||. ..+.++ ++|+||.|+-.++|..|+..|++.++.|++++|+.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 345899999999999999999999999999 444443 479999999999999999999999999999999988
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.09 E-value=4.1e-10 Score=85.09 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=66.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
+++|||.+|+..+.-.+|+.+|++||. .-.+++- +..-++|+||++.+..+|.+||..||.+.|+|+.|.|+.++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 689999999999999999999999999 4334443 44457899999999999999999999999999999999995
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=6e-10 Score=81.70 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=64.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..|||| +.+++..|.++|+++|. .++++++ .+ +-|||||.|.+..+|++|+..+|...+.|+.++|.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 368999 99999999999999999 8888888 53 88999999999999999999999999999999999983
No 70
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.04 E-value=1.1e-09 Score=73.16 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=67.8
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-c-cEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-S-SVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~-~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
+.......+|++.+|..+.+..+..+|.++|. . .+++-+ +|.++|||||+|.+.+.|.-|-+.||+.-++++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 33444788999999999999999999999955 3 333323 899999999999999999999999999999999999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
+.+-
T Consensus 124 c~vm 127 (214)
T KOG4208|consen 124 CHVM 127 (214)
T ss_pred eEEe
Confidence 8877
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=8.4e-10 Score=79.59 Aligned_cols=77 Identities=14% Similarity=0.319 Sum_probs=69.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
-..|||..+.++.+++||+..|..||. ..+.+-+ .+.++||+|++|.+..+...||..||-+.++|+.|+|..+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 478999999999999999999999999 6666666 567899999999999999999999999999999999998854
Q ss_pred C
Q 043634 95 P 95 (121)
Q Consensus 95 ~ 95 (121)
|
T Consensus 290 P 290 (544)
T KOG0124|consen 290 P 290 (544)
T ss_pred C
Confidence 4
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.02 E-value=1e-09 Score=80.62 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=65.7
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....|+|+|+|||+++|...|++-|..||. +...++..|+++| .|.|.+.++|++|+..|+|..+.|+.|.|.+.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 344799999999999999999999999999 4444555787766 89999999999999999999999999999863
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.4e-09 Score=83.47 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=64.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CC----CcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AG----RLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~----~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
++|||.||++.++.++|...|...|. .++++.. .+ .+.|||||+|.+.++|.+|+..|+|+.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 45999999999999999999999999 5555554 22 23499999999999999999999999999999999998
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 3
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.00 E-value=2.7e-09 Score=73.83 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=66.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccE--EEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSV--RPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~--~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
.++|+|.|||+.+.++||+++|..||. ..+ .+-..|.+.|.|-|.|...++|.+|+..+||..++|+.+++.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 599999999999999999999999987 222 2222888899999999999999999999999999999999988743
No 75
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.98 E-value=2.7e-09 Score=82.15 Aligned_cols=75 Identities=27% Similarity=0.409 Sum_probs=68.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc------CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS------AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~------~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
.+++||+||++.++++.|-..|+.||. .++++++ ....+.|+||.|-+..++++|++.|+|..+.+..+++.|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 799999999999999999999999999 7788777 344567999999999999999999999999999999999
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
++
T Consensus 254 gk 255 (877)
T KOG0151|consen 254 GK 255 (877)
T ss_pred cc
Confidence 83
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.97 E-value=3.9e-09 Score=75.42 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=67.9
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-c--------cEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-S--------SVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV 86 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~--------~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~ 86 (121)
.++.|||+|||..+|.+++..+|+++|. . .|++-+ .|..+|=|.+.|.-.+++.-|+..|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 3788999999999999999999999997 2 144444 7888999999999999999999999999999999
Q ss_pred EEEEecC
Q 043634 87 LSVERAS 93 (121)
Q Consensus 87 l~v~~a~ 93 (121)
|+|+.|+
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999995
No 77
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=5.5e-09 Score=78.41 Aligned_cols=71 Identities=35% Similarity=0.482 Sum_probs=63.3
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
..+..+|+|-|||..+++++|..+|+.||+ |+-+. +-..+|..||+|-|..+|++|++.|++..+.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGe--ir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGE--IREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcc--hhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 444789999999999999999999999999 54454 556679999999999999999999999999999887
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=5e-09 Score=71.20 Aligned_cols=70 Identities=27% Similarity=0.404 Sum_probs=60.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..+|||+||+.+.+.+|+.+|..||. +..+. ...||+||+|.+.-+|+.|+-.+|+..++|..+.|++++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~--~~d~~--mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGK--IPDAD--MKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccc--cccce--eecccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 46899999999999999999999999 32222 113789999999999999999999999999999999995
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.82 E-value=3.7e-09 Score=75.66 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=65.0
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..+++||++|++.++++.|+..|.+||. ..+.+++ ++.++||+||+|.+.+...+++. ..-..|.|+.|.++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a- 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA- 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec-
Confidence 5799999999999999999999999999 5555544 78899999999998888877764 3347899999998888
Q ss_pred CCCc
Q 043634 94 KPNE 97 (121)
Q Consensus 94 ~~~~ 97 (121)
-++.
T Consensus 83 v~r~ 86 (311)
T KOG4205|consen 83 VSRE 86 (311)
T ss_pred cCcc
Confidence 4443
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.78 E-value=2.2e-08 Score=74.23 Aligned_cols=73 Identities=23% Similarity=0.354 Sum_probs=61.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...|||+|||++++.++|+.+|..||. ....+.. .++..+||||+|.+...+..||.+ +-..++++++.|+..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 466999999999999999999999999 4433333 355559999999999999999965 478899999999977
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.77 E-value=2.3e-08 Score=69.01 Aligned_cols=78 Identities=17% Similarity=0.305 Sum_probs=67.3
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEc---cCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPC---SAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~---~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
..+....||.|.|..+++++.|-+.|.+|-. ..-+++ ++|+++||+||.|.+..++.+|+..|+|..++.+.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 3444799999999999999999999999876 333344 499999999999999999999999999999999998875
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 44
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.72 E-value=2e-07 Score=56.13 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=60.1
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhh--CCccEEEc----cCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC----CeEEE
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHY--GASSVRPC----SAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL----GKVLS 88 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~--G~~~~~~~----~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~----g~~l~ 88 (121)
.++|-|+|||...+.++|.+++... |.-....+ .++.+.|||||.|.+...+..-...++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 4799999999999999999999754 33122111 17788999999999999999999999998775 45668
Q ss_pred EEecCC
Q 043634 89 VERASK 94 (121)
Q Consensus 89 v~~a~~ 94 (121)
|.+|+.
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 888843
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.71 E-value=2.1e-08 Score=71.80 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=64.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
..+|||++||.++++.+|++.|.+||. ..+.++. +...+||+||+|.++++++.++ ...-..|+|+.+.|..| .
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA-~ 174 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRA-I 174 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeec-c
Confidence 459999999999999999999999997 3333333 6788999999999999988886 35668999999999999 6
Q ss_pred CCcc
Q 043634 95 PNEE 98 (121)
Q Consensus 95 ~~~~ 98 (121)
|+..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 6443
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.55 E-value=3.3e-07 Score=68.30 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=64.5
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
......|-+++|||.+|++||.++|+.++...+.+.+ +|+..|-|||+|.+.+++..|++ .+...+..+.|.|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3446788899999999999999999999985565555 69999999999999999999996 4667788888888766
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1.3e-07 Score=71.21 Aligned_cols=76 Identities=22% Similarity=0.432 Sum_probs=67.8
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..+.+||++||...+++++.+++..||. ....++. +|.++||||.+|.+......|+..|||..++++.|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 3799999999999999999999999999 3333333 67899999999999999999999999999999999999984
No 86
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.52 E-value=2.1e-07 Score=64.39 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=67.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
......+||+|+.+.++.++++..|..||. ..+.++. .+..+||+||+|.+.+....++. |+|..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 334799999999999999999999999999 3344444 66789999999999999999997 999999999999987
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
.+
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 74
No 87
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.52 E-value=6e-07 Score=52.29 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=46.9
Q ss_pred cEEEecCCCCCCCHH----HHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 20 VTLLIKHLPDAIPQD----TLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~----~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
..|||.|||.+.... -|++++..+|.. +..+ + .+.|++.|.+.+.|.+|.++|+|-.+-|.+|.|++...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGk-Vl~v-~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGK-VLSV-S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCE-EEEE-e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 468999999998875 466666677751 2112 3 37999999999999999999999999999999998843
No 88
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=4.9e-08 Score=66.16 Aligned_cols=75 Identities=23% Similarity=0.181 Sum_probs=64.8
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+...+|||+|+...++++.|.++|-+.|. ..+.+.. .+..+ ||||.|.++.+..-|+..+||..+-+..+.+++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 33789999999999999999999999999 5566655 33334 9999999999999999999999999999888765
No 89
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.42 E-value=3.8e-06 Score=57.14 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=65.6
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEe
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL-GKVLSVER 91 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~-g~~l~v~~ 91 (121)
....+...+|+.|||..++.+.|..+|.+|.. ..++++... ++.|||+|.+...+..|...++|..|- ...+.|.+
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~--~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR--SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC--CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 33556899999999999999999999999987 678887622 479999999999999999999998887 77788877
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
+
T Consensus 219 a 219 (221)
T KOG4206|consen 219 A 219 (221)
T ss_pred c
Confidence 6
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.36 E-value=5.3e-07 Score=61.46 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=51.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL 83 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~ 83 (121)
-.+|||-||..+++|++|+.+|+.|.. ..+++-.. ....+||++|++.+.|..|+..|+|..|-
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 378999999999999999999999977 32333322 22469999999999999999999987653
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.36 E-value=3.9e-06 Score=61.60 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=66.3
Q ss_pred ccEEEecCCCCC-CCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 043634 19 LVTLLIKHLPDA-IPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKP 95 (121)
Q Consensus 19 ~~~l~V~nlp~~-~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 95 (121)
+..|.|.||... +|.+.|..+|+-||. .+|+++.+.+ --|.|.|.|...|.-|+..|+|..|.|++|+|.+++.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 588999999776 999999999999999 6777776433 68999999999999999999999999999999999643
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.21 E-value=1.1e-05 Score=60.44 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=60.8
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-cc-EEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SS-VRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~-~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+...|-+++||+.|+++||.++|+..-. .. +.++. .++..|-|||.|.+.+.++.|+.+ |...|+.+.|.|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 45789999999999999999999987544 22 32333 667779999999999999999865 557888888888766
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.21 E-value=2.5e-06 Score=61.63 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=62.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC---ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~---~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...+|||||-|.+|++||.+.+...|. ..+++.. +|+++|||++...+.......++.|--..|+|+.-.|.-.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 577999999999999999999998887 2344443 8999999999999988888999999999999987666544
No 94
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.09 E-value=8e-06 Score=58.90 Aligned_cols=78 Identities=19% Similarity=0.323 Sum_probs=66.7
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-cc--------EEEc---cCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SS--------VRPC---SAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL 83 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~--------~~~~---~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~ 83 (121)
.....+|||-+||..+++++|.++|.++|. .. +.+- .++..++-|.|+|.|...|.+||.-+++..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 334799999999999999999999999987 21 1111 17888999999999999999999999999999
Q ss_pred CeEEEEEecC
Q 043634 84 GKVLSVERAS 93 (121)
Q Consensus 84 g~~l~v~~a~ 93 (121)
+..|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9999999883
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.08 E-value=5.3e-06 Score=56.61 Aligned_cols=72 Identities=28% Similarity=0.425 Sum_probs=61.8
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...+.+.|.+++..+...+|.+.|+.+|. +..... .++++||.|....++..|+..+++..+.++.|.+...
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~--~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGE--VTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCC--Cchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 33789999999999999999999999999 311111 4689999999999999999999999999999999544
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.08 E-value=6e-05 Score=55.07 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=68.0
Q ss_pred CCCCCccEEEecCCCCC-CCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 14 QETENLVTLLIKHLPDA-IPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~-~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
....+++.+.|-+|... +.-+.|..+|+.||. +.|+++++. .|-|.|++.|....++|+..||+..+-|.+|.|..
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 44455899999999987 666789999999999 788888753 58999999999999999999999999999999998
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
++
T Consensus 360 Sk 361 (494)
T KOG1456|consen 360 SK 361 (494)
T ss_pred cc
Confidence 83
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.04 E-value=1.5e-05 Score=48.80 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=43.0
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCC-----eeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL-----RFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~-----~i~g~~l~v~~a 92 (121)
++.|+|.+++..++.++|+..|+.||. |.++.-...-..|||.|.+.+.|..|+..+... .+.+..+.++.-
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~--V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGE--VAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCC--cceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 357889999999999999999999998 777762222358999999999999998877544 455555555443
No 98
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.99 E-value=4.1e-06 Score=63.22 Aligned_cols=73 Identities=27% Similarity=0.382 Sum_probs=65.9
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
-.++|+.-|+..++..+|+.+|+.+|. -.|++|. ++.++|.+||+|.|..+...|| .|.|..++|.+|.|+..
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 588999999999999999999999999 5566665 7788999999999999999998 79999999999999876
No 99
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.81 E-value=0.00012 Score=57.33 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=63.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC--ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~--~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
+.|-+.|.|+.++-+||-++|..|-. .+|++-. .|...|-|.|.|++.+.|.+|...|++..|..+++.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 58899999999999999999999977 4455444 677789999999999999999999999999999988754
No 100
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.78 E-value=2.6e-05 Score=55.64 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=66.9
Q ss_pred CCCCccEEE-ecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 15 ETENLVTLL-IKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 15 ~~~~~~~l~-V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
...+..++| |++++..+++++|+..|..+|. ..+++.. ++..+|+||+.|........++.. +...+.++.+.+
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 334455666 9999999999999999999998 4444443 778899999999999998888876 778899999999
Q ss_pred EecCCCCccc
Q 043634 90 ERASKPNEEN 99 (121)
Q Consensus 90 ~~a~~~~~~~ 99 (121)
... .+.++.
T Consensus 259 ~~~-~~~~~~ 267 (285)
T KOG4210|consen 259 EED-EPRPKS 267 (285)
T ss_pred ccC-CCCccc
Confidence 988 665554
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.73 E-value=0.00013 Score=52.84 Aligned_cols=74 Identities=14% Similarity=0.300 Sum_probs=57.0
Q ss_pred ccEEEecCCCCCCCHHH------HHHHHhhhCC-ccEEEcc-C---CCccc--EEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 043634 19 LVTLLIKHLPDAIPQDT------LSRIFSHYGA-SSVRPCS-A---GRLRN--CVFVDFGNEPLASQAQMQLNGLRFLGK 85 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~------L~~~f~~~G~-~~~~~~~-~---~~~~g--~afv~f~~~~~a~~ai~~l~g~~i~g~ 85 (121)
..-+||-+||+.+..++ -.++|++||. ..+.+-+ + ....+ ..||+|...++|.+||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46789999999877765 3578999999 4443333 1 11112 349999999999999999999999999
Q ss_pred EEEEEec
Q 043634 86 VLSVERA 92 (121)
Q Consensus 86 ~l~v~~a 92 (121)
.|+..+.
T Consensus 194 ~lkatYG 200 (480)
T COG5175 194 VLKATYG 200 (480)
T ss_pred eEeeecC
Confidence 9998876
No 102
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.73 E-value=0.0001 Score=54.38 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=61.7
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCe-EEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGK-VLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~-~l~v~~a 92 (121)
+|..++.+.|||..+++++|+..|..-|.. ++.-. -++.+.++++.+.+.+.|..|+-.+|...+++. -++|+++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~-vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQ-VKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCce-EEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 447899999999999999999999987761 22222 344567999999999999999999999998854 8899988
No 103
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.71 E-value=0.0001 Score=54.05 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=61.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-cc---EEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SS---VRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~---~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...|.+++||+..+.+||.++|..|.. .. |+++. .|...|-|||+|.+.+.|.+|..+.+......+.|.|--+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 677899999999999999999998876 32 44444 6777899999999999999998888876667888888666
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00038 Score=52.63 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=46.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc------CCCccc---EEEEEeCCHHHHHHHHHHh
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRN---CVFVDFGNEPLASQAQMQL 77 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~------~~~~~g---~afv~f~~~~~a~~ai~~l 77 (121)
.++||||+||+.++|+.|...|..||...+.+.. .-..+| |+|+.|.++.+...-+...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 7999999999999999999999999995555552 112345 9999999988776655443
No 105
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.68 E-value=8e-05 Score=57.15 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=61.9
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCee---CCeEEEEEe
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRF---LGKVLSVER 91 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i---~g~~l~v~~ 91 (121)
...+...|||.||-+-.|..+|+.+++.-|.. |.-.+..+.+.+|||.|.+.++|.+.+..|||..+ +++.|.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~-Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGN-VEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCc-hHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 34458999999999999999999999965441 21124455678999999999999999999999766 467788888
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 74
No 106
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.49 E-value=9.5e-05 Score=51.40 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=54.7
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---C--------CCcc----cEEEEEeCCHHHHHHHHHHhcCCe
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---A--------GRLR----NCVFVDFGNEPLASQAQMQLNGLR 81 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~--------~~~~----g~afv~f~~~~~a~~ai~~l~g~~ 81 (121)
....||+++||+.+...-|+.+|+.||. -.|-+-. + |.++ .-|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3578999999999999999999999999 3332221 1 2222 246789999999999999999999
Q ss_pred eCCeE
Q 043634 82 FLGKV 86 (121)
Q Consensus 82 i~g~~ 86 (121)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.48 E-value=0.00083 Score=49.28 Aligned_cols=78 Identities=26% Similarity=0.272 Sum_probs=60.4
Q ss_pred CCCCccEEEecCC--CCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC--CeEEEE
Q 043634 15 ETENLVTLLIKHL--PDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL--GKVLSV 89 (121)
Q Consensus 15 ~~~~~~~l~V~nl--p~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~--g~~l~v 89 (121)
+..++..|.+.=| -+.+|.+.|..+....|. ..|.+.+ ++--.|.|+|++.+.|.+|-..|||..|- ...|+|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk--kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK--KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe--ccceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 3444666666544 445899999999999999 5555544 23368999999999999999999998775 578999
Q ss_pred EecCCC
Q 043634 90 ERASKP 95 (121)
Q Consensus 90 ~~a~~~ 95 (121)
++| +|
T Consensus 194 eyA-kP 198 (494)
T KOG1456|consen 194 EYA-KP 198 (494)
T ss_pred Eec-Cc
Confidence 999 44
No 108
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.45 E-value=0.00013 Score=54.13 Aligned_cols=70 Identities=24% Similarity=0.297 Sum_probs=57.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCC-eeCCeEEEEEec
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL-RFLGKVLSVERA 92 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~-~i~g~~l~v~~a 92 (121)
.++|++||.+.++..||+.+|..... .+-.++.. .||+|+.+.+..-+.+|++.++|. .+.|+++.|...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k---~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK---SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee---cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 46899999999999999999975433 22333321 279999999999999999999985 688999999887
No 109
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.43 E-value=0.00058 Score=36.57 Aligned_cols=52 Identities=13% Similarity=0.311 Sum_probs=38.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHH
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQ 74 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai 74 (121)
+.|-|.+.++...+..| ..|..||. +..+.-+....+.++.|.++.+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGe--I~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGE--IVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCC--EEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 56778898888776655 48889999 544442333569999999999999874
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0012 Score=50.66 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=58.3
Q ss_pred ccEEEecCCCCCCCH------HHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEE
Q 043634 19 LVTLLIKHLPDAIPQ------DTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFL-GKVLS 88 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~------~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~-g~~l~ 88 (121)
...|+|-|+|---.. ..|..+|+++|. ...-++. .|..+||.|++|.+..+|..|++.|||..|+ .+.+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 678899999875333 357788999998 4444443 5668999999999999999999999999987 56666
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|...
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6544
No 111
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.39 E-value=0.0012 Score=38.53 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=41.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhc
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 78 (121)
.+..||+ .|..+...||.++|+.||...|.++.. .-|||...+.+.+..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECT----TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC----CcEEEEeecHHHHHHHHHHhc
Confidence 5667776 999999999999999999955566543 479999999999998887765
No 112
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.25 E-value=0.0014 Score=42.21 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=41.4
Q ss_pred HHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCc
Q 043634 35 TLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPNE 97 (121)
Q Consensus 35 ~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~~~ 97 (121)
+|.+.|..||. .-+|++ + +.-+|+|.+-.+|.+|+ .++|..++|+.|+|......+.
T Consensus 52 ~ll~~~~~~GevvLvRfv--~---~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV--G---DTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE--T---TCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEe--C---CeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccHH
Confidence 68888889998 333333 2 47799999999999998 5899999999999988743343
No 113
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.23 E-value=0.0019 Score=46.91 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=56.6
Q ss_pred ccEEEecCCCC----CCC-------HHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 043634 19 LVTLLIKHLPD----AIP-------QDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV 86 (121)
Q Consensus 19 ~~~l~V~nlp~----~~~-------~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~ 86 (121)
.++|.+.|+=. ..+ .++|..-..+||. .+|.+. ...+.|.+-|.|.+.+.|..||..|+|..+.|+.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-ccCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 68888988721 223 2456666889999 333333 3345689999999999999999999999999999
Q ss_pred EEEEec
Q 043634 87 LSVERA 92 (121)
Q Consensus 87 l~v~~a 92 (121)
|..+..
T Consensus 344 l~A~i~ 349 (382)
T KOG1548|consen 344 LTASIW 349 (382)
T ss_pred EEEEEe
Confidence 998877
No 114
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.19 E-value=0.0042 Score=34.29 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=42.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhh----CCccEEEccCCCcccEEEEEeCCHHHHHHHHHHh
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHY----GASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~----G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l 77 (121)
+.+|+|+++.. ++.++++.+|..| +...+.++.- .-|-|.|.+...|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 57899999854 7778899999999 5566777762 25678999999999998654
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.17 E-value=0.0007 Score=54.26 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=66.0
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEec
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG--KVLSVERA 92 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g--~~l~v~~a 92 (121)
...+.+.+|+++|..++....|...|..||. ++.|.-.....|+|+.|.+...+..|+..|-|..|+| +.++|.++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGp--ir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGP--IRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCc--ceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 4555899999999999999999999999999 6666523334699999999999999999999999996 57899988
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
.
T Consensus 529 ~ 529 (975)
T KOG0112|consen 529 S 529 (975)
T ss_pred c
Confidence 4
No 116
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.02 E-value=0.0031 Score=48.18 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=45.0
Q ss_pred HHHHHHhhhCC-ccEEEcc------CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 35 TLSRIFSHYGA-SSVRPCS------AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 35 ~L~~~f~~~G~-~~~~~~~------~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+++.-+++||. .+|.+.+ .....|..||+|.+.+++++|...|+|..+.++.+...|-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 45555667787 4444443 1233578899999999999999999999999999988876
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0028 Score=48.07 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=51.0
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHh-hhCCccEEEcc------CCCcccEEEEEeCCHHHHHHHHHH
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFS-HYGASSVRPCS------AGRLRNCVFVDFGNEPLASQAQMQ 76 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~-~~G~~~~~~~~------~~~~~g~afv~f~~~~~a~~ai~~ 76 (121)
....++.+|||||+||.-++-.+|-.+|. -||. |...- -+..+|-|-|+|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg--V~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG--VLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCc--eEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34567789999999999999999999998 6998 33322 356788999999999999999864
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.86 E-value=0.0022 Score=47.79 Aligned_cols=63 Identities=29% Similarity=0.495 Sum_probs=52.5
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccC--------C-C-------cccEEEEEeCCHHHHHHHHHHhcC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSA--------G-R-------LRNCVFVDFGNEPLASQAQMQLNG 79 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~--------~-~-------~~g~afv~f~~~~~a~~ai~~l~g 79 (121)
-+.++|.+-|||.+-.-+-|.++|+.+|. ..|++|.- + . .+-||+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35899999999999888999999999999 77777761 1 1 256899999999999999987753
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.79 E-value=0.0061 Score=48.12 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=56.8
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhCC--ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 21 TLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 21 ~l~V~nlp~~~~~~~L~~~f~~~G~--~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.|.+.|||+.....||+.+|+.... --|+++ |...|-|||.|.+-++|..|+.+ .+..|+|-.+++-++
T Consensus 4 IIRLqnLP~tAga~DIR~FFSGL~IPdGgVHII--GGe~GeaFI~FsTDeDARlaM~k-dr~~i~g~~VrLlLS 74 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFSGLKIPDGGVHII--GGEEGEAFIGFSTDEDARLAMTK-DRLMIHGAEVRLLLS 74 (944)
T ss_pred EEEecCCcccccchHHHHhhcccccCCCceEEe--cccccceEEEecccchhhhhhhh-cccceecceEEEEec
Confidence 4667899999999999999987644 226776 55568999999999999998854 578899999988887
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.67 E-value=0.0074 Score=44.63 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=50.9
Q ss_pred ccEEEecCCCCCCCHHHHHHHHh---hh--CCccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFS---HY--GASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~---~~--G~~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
--.|.+++||+++++.++..+|. .. |.+.+.++. .|+..|-|||.|..+++|+.|+.+ |...++.+.|.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 45677789999999999999996 22 234455554 677789999999999999999865 33444444443
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.55 E-value=0.0014 Score=52.33 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=61.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++|+|.|+..|.++|+.++...|. .+++.+. .|+.+|.|++.|.+..++.+++....+..+.-..+.|..+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 578999999999999999999999999 5554443 7889999999999999999888777766666666666554
No 122
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.53 E-value=0.0022 Score=44.75 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=45.4
Q ss_pred HHHHHHHh-hhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 34 DTLSRIFS-HYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 34 ~~L~~~f~-~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+++...|. +||+ ..+.++. ...-.|=+||.|...++|++|+..||+--+.|++|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444455 7888 4444444 2234678899999999999999999999999999998877
No 123
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.50 E-value=0.018 Score=34.86 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=47.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEc-c---------CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPC-S---------AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVL 87 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~-~---------~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l 87 (121)
.+-|.|=+.|+. ....+.+.|++||. .....+ . ......+-.|+|.+..+|.+|+. -||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456778888888 45668889999999 433201 0 01224688999999999999994 69999998654
Q ss_pred -EEEec
Q 043634 88 -SVERA 92 (121)
Q Consensus 88 -~v~~a 92 (121)
-|.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 56666
No 124
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.21 E-value=0.041 Score=37.01 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=52.2
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL 83 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~ 83 (121)
.-..|.|++||+..+..||++...+.|. +.+-...+ -|++.|+|-..++..-|+..|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGd--vCfadv~r-Dg~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGD--VCFADVQR-DGVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCC--eeeeeeec-ccceeeeeeehhhHHHHHHhhcccccc
Confidence 3578999999999999999999999999 65554222 269999999999999999999876554
No 125
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.08 E-value=0.007 Score=47.28 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=58.8
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..++..++||+|+...+..+-++.++..+|- |..+.. -.|||..|.+.....+|+..++...++|+.+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~--v~s~kr---~~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGF--VPSWKR---DKFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCc--chhhhh---hhhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3444799999999999999999999999998 322221 13999999999999999999999999988876544
No 126
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.06 E-value=0.018 Score=42.72 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=55.1
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-C-----CCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-A-----GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~-----~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
...|.|.||.+.++.++++.+|.-.|. ..+++.- . .-....|||.|.|...+..|. .|..+.+-++.|.|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 348999999999999999999999999 4444433 1 122459999999998888775 5666777777766654
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
.
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 4
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.05 E-value=0.0063 Score=40.57 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=46.8
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhh-hCCc-cEEEcc--------CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCC---
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSH-YGAS-SVRPCS--------AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG--- 84 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~-~G~~-~~~~~~--------~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g--- 84 (121)
...+|-|++||+.++++++...++. ++.. ...... .......|||.|.+.+++..-...++|..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3679999999999999999987776 5552 111111 11224689999999999888888999976643
Q ss_pred --eEEEEEec
Q 043634 85 --KVLSVERA 92 (121)
Q Consensus 85 --~~l~v~~a 92 (121)
....|++|
T Consensus 86 ~~~~~~VE~A 95 (176)
T PF03467_consen 86 NEYPAVVEFA 95 (176)
T ss_dssp -EEEEEEEE-
T ss_pred CCcceeEEEc
Confidence 23456666
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.99 E-value=0.00042 Score=55.15 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=52.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEc-c--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPC-S--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFL 83 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~-~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~ 83 (121)
.++||+||+..+.+.+|...|..+|. ..+++. . .++.+|+||+.|...+.+.+|+....+..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 68899999999999999999999988 433333 2 7888999999999999999988655544333
No 129
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.94 E-value=0.013 Score=40.96 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=49.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-cc-EEEcc-CCCcccEEEEEeCCHHHHHHHHHHhc
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SS-VRPCS-AGRLRNCVFVDFGNEPLASQAQMQLN 78 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~-~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~ 78 (121)
..|||.||+..++.+.|...|+.||. .. |.++. .++..+-++|.|.....+..|....+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 88999999999999999999999999 33 33333 66667899999999999888887764
No 130
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.91 E-value=0.037 Score=39.69 Aligned_cols=59 Identities=27% Similarity=0.285 Sum_probs=44.2
Q ss_pred HHHHHHHhhhCC-ccEEEcc---C-CCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 34 DTLSRIFSHYGA-SSVRPCS---A-GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 34 ~~L~~~f~~~G~-~~~~~~~---~-~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
++++.-+.+||. ..|.+.. . -.....-||+|...++|..|+..|||..++|+.++..+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 467777889998 3332222 1 122346799999999999999999999999999887655
No 131
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=95.56 E-value=0.052 Score=38.84 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=39.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHH
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEP 68 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~ 68 (121)
.+-||++|||+++...||+..+.+.+....++-+.|. +|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~-~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGH-FGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecC-CcceeEecCCcc
Confidence 5789999999999999999999998873344444553 579999998753
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.26 E-value=0.095 Score=35.24 Aligned_cols=58 Identities=28% Similarity=0.327 Sum_probs=42.7
Q ss_pred CHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEec
Q 043634 32 PQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN--GLRFLGKVLSVERA 92 (121)
Q Consensus 32 ~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--g~~i~g~~l~v~~a 92 (121)
....|+.+|..|+. .....+.+ -+...|.|.+.+.|.+|...|+ +..++|..+++.++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 34789999999998 44444432 3578899999999999999999 99999999999988
No 133
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.06 E-value=0.21 Score=28.34 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=37.8
Q ss_pred EEec-CCCCCCCHHHHHHHHhhhCC---ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 22 LLIK-HLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 22 l~V~-nlp~~~~~~~L~~~f~~~G~---~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+||. +--..++..+|..++...+. ..+-.+.- ...|+||+... ..+..++..|++..+.|++++|+.|
T Consensus 3 l~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I--~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 3 LFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDI--FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEE--eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4443 33345788889999987644 33434431 12589999865 5788899999999999999999865
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.87 E-value=0.47 Score=29.24 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=45.2
Q ss_pred ccEEEecCCCCC-CCHHHHHHHHhhhCC--ccEEEccCCC-cccEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 043634 19 LVTLLIKHLPDA-IPQDTLSRIFSHYGA--SSVRPCSAGR-LRNCVFVDFGNEPLASQAQMQLNGLRFLG 84 (121)
Q Consensus 19 ~~~l~V~nlp~~-~~~~~L~~~f~~~G~--~~~~~~~~~~-~~g~afv~f~~~~~a~~ai~~l~g~~i~g 84 (121)
++.+.+=-.|+. ++.++|..+.+.+-. ..+++++.+. ++--+.+.|.+...|+.=...+||..++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444554445555 555566555555555 4567777443 56577899999999999999999987763
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.54 E-value=0.0083 Score=48.41 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=57.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..+||+|||+..+++.+|+..|..+|. ..|.+-. -+....|+|+.|.+...+..|...+.+..|..-.+++.+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 689999999999999999999999999 4443332 3344469999999999999998888887776444444433
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.94 E-value=0.084 Score=40.69 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=34.9
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCCeeC---C-eEEEEEecCCCC
Q 043634 53 AGRLRNCVFVDFGNEPLASQAQMQLNGLRFL---G-KVLSVERASKPN 96 (121)
Q Consensus 53 ~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~---g-~~l~v~~a~~~~ 96 (121)
+..+.|||||.|.+.+.+....+++||+.+. + +...+.||+.+.
T Consensus 427 nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 427 NKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 6677899999999999999999999997553 4 445788885443
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.66 E-value=0.076 Score=40.32 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=55.2
Q ss_pred cEEEecCCCCCCC-HHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 043634 20 VTLLIKHLPDAIP-QDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKP 95 (121)
Q Consensus 20 ~~l~V~nlp~~~~-~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 95 (121)
+.+-+.-.|+... ..+|...|.+||. +..+-.+.+.-.|.|+|.+..+|-.|. +.++..|+++-|+|-|- .+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~--i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh-np 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGE--IENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH-NP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCc--cccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEe-cC
Confidence 4455555566644 4789999999999 555554555568999999988886664 57899999999999988 44
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.63 E-value=0.82 Score=29.64 Aligned_cols=71 Identities=21% Similarity=0.380 Sum_probs=48.2
Q ss_pred CCCccEEEecCCCCCCCH-HH---HHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 16 TENLVTLLIKHLPDAIPQ-DT---LSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~-~~---L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
.+|..+|.|+=|..++.. +| +..-++.||. .+|..+ | +.-|.|.|.|..+|=.|+.+++. ..-|..+...
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--C--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 345678888877666543 34 4455567899 454443 3 46899999999999999988875 4445555544
Q ss_pred e
Q 043634 91 R 91 (121)
Q Consensus 91 ~ 91 (121)
|
T Consensus 158 W 158 (166)
T PF15023_consen 158 W 158 (166)
T ss_pred c
Confidence 3
No 139
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.49 E-value=0.16 Score=39.47 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=49.1
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhh--hCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcC--CeeCCeEEE
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSH--YGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG--LRFLGKVLS 88 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~--~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g--~~i~g~~l~ 88 (121)
.+|.|.++-||..+..++++.+|.. +-. .++.+-.+ .-=||+|.+..+|..|.+.|.. .+|.|+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3799999999999999999999965 222 23333222 1338999999999999887754 456676653
No 140
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.22 E-value=0.029 Score=40.64 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=53.4
Q ss_pred ccEEEecCCCCCCCHHHHH---HHHhhhCC-ccEEEcc-C----CC-cccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 19 LVTLLIKHLPDAIPQDTLS---RIFSHYGA-SSVRPCS-A----GR-LRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~---~~f~~~G~-~~~~~~~-~----~~-~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
...+||-+|+.....+.+. ..|.+||. .++..-. . +. ...-++|+|...++|..||..++|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4678888999886555433 46777887 4443333 1 11 123479999999999999999999999999877
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
..+.
T Consensus 157 a~~g 160 (327)
T KOG2068|consen 157 ASLG 160 (327)
T ss_pred HhhC
Confidence 6666
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.81 E-value=0.59 Score=33.81 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=49.3
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE-EEEEec
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV-LSVERA 92 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~-l~v~~a 92 (121)
.=|-|-+.|+.-.. -|...|.+||. |.-...+.+..+-+|.|....+|++||. .+|..|+|.. |-|+.+
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG~--Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCGE--VVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhCe--eeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 44555577776554 46678999999 4333333444699999999999999995 5899998754 467665
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.60 E-value=1.9 Score=32.93 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=55.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC--ccEEEccCCCc-ccEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRL-RNCVFVDFGNEPLASQAQMQLNGLRFLG 84 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~--~~~~~~~~~~~-~g~afv~f~~~~~a~~ai~~l~g~~i~g 84 (121)
++.|.|=.+|..++..||..+...+-. ..+++++.|.. +=-..|.|.+..+|..=...+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 789999999999999999999998765 56888885543 3356899999999999999999987763
No 143
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=1.6 Score=32.97 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=46.3
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC--ccEEEccCCCcccEEEEEeCCHHHHHHHHHH
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~--~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 76 (121)
-.+.|-|-+.|.....+||..+|+.|+. -.|+|+.. .++|..|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd----thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD----THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec----ceeEEeecchHHHHHHhhc
Confidence 4799999999999999999999999988 45666543 4899999999998888753
No 144
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=89.58 E-value=0.014 Score=43.77 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=61.1
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+++-|+|+|+....+.|..++..||. ..+..+.+.......-++|...+.+..||..++|..+....++|.|.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 577999999999999999999999999 55544444333345567899999999999999999999998888876
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.73 E-value=2.8 Score=23.38 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 30 AIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 30 ~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
.++..+++.-+..|+- .+++.. +..=||.|.+..+|+++....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~--~~I~~d---~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW--DRIRDD---RTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc--ceEEec---CCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4778899999999987 333321 123489999999999999999999888777654
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=88.70 E-value=0.35 Score=34.75 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=53.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
.+++|++++.+.+.+.+...++..+|. ....... ...+++++++.|...+.+..++.......+.+..+.
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~ 161 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGE 161 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccccccc
Confidence 689999999999999988899989887 3333322 667889999999999999999865443455554443
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=88.68 E-value=0.045 Score=40.66 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=50.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV 86 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~ 86 (121)
..+++|++|+..+...++-.+|..+|. +.+-. .+....+|-+.|....+...|+ .++|..+.-+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Ge--v~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~k~qh 217 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGE--VSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQH 217 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcch--hhhhhhhccCCCcchhhhHhhhhhHHHHH-Hhcchhhhhhh
Confidence 578999999999999999999999999 43333 5555667889999888887787 45666655333
No 148
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.25 E-value=0.52 Score=38.46 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=53.7
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCee--CCeEEEEEecC
Q 043634 21 TLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRF--LGKVLSVERAS 93 (121)
Q Consensus 21 ~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i--~g~~l~v~~a~ 93 (121)
+.++-|.+-..+...|..+|+.||. .+.+.++ .-..|.|+|...+.|..|++.++|.++ .|-+.+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr---~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLR---DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecc---cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3444555567788889999999999 4444443 235899999999999999999999764 46678898884
No 149
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=76.97 E-value=6.6 Score=24.37 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=29.8
Q ss_pred ccEEEecCCCCC---------CCHHHHHHHHhhhCCccEEEcc-CCCcccEEEEEeCCHH-HHHHHH
Q 043634 19 LVTLLIKHLPDA---------IPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEP-LASQAQ 74 (121)
Q Consensus 19 ~~~l~V~nlp~~---------~~~~~L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~~~-~a~~ai 74 (121)
+-++.|-|++.. .+.+.|.+.|+.|....++.+. ...+.|+++|.|...- -...|+
T Consensus 8 PwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 8 PWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp S-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred CCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 345666777543 3557899999999885566665 4456789999999654 344444
No 150
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=76.73 E-value=6.4 Score=23.15 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=36.4
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc-CCCcccEEEEEeCC
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGN 66 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~ 66 (121)
.+...-|||||++..+.+.--..+....+.-+..++. .....||.|-++.+
T Consensus 22 ~Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 22 LEIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred EecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 3456789999999999998777777766553355555 33356899988743
No 151
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.62 E-value=36 Score=27.16 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=56.3
Q ss_pred CCccEEEecCCCCC-CCHHHHHHHHhhh---C-C-ccEEEcc-------------CCC----------------------
Q 043634 17 ENLVTLLIKHLPDA-IPQDTLSRIFSHY---G-A-SSVRPCS-------------AGR---------------------- 55 (121)
Q Consensus 17 ~~~~~l~V~nlp~~-~~~~~L~~~f~~~---G-~-~~~~~~~-------------~~~---------------------- 55 (121)
.+...|-|-|+.|. +.-.+|..+|..| | . ++|.+.. .|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 44789999999997 7888999999876 3 3 4555542 222
Q ss_pred ---------------cccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 56 ---------------LRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 56 ---------------~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..=||.|+|.+...|........|..+......+.+-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 1137889999999999999999999988655444433
No 152
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=72.77 E-value=7.3 Score=23.46 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=35.4
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc-CCCcccEEEEEeCCH
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNE 67 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~~ 67 (121)
+...-||||+++..+.+.--..+-..++.-+..++. .....||.|-++.+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 446789999999999987666666666553355555 333348999888753
No 153
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=71.93 E-value=7.9 Score=21.31 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=14.0
Q ss_pred HHHHHHHhhhCCccEEEcc
Q 043634 34 DTLSRIFSHYGASSVRPCS 52 (121)
Q Consensus 34 ~~L~~~f~~~G~~~~~~~~ 52 (121)
.+|+++|+..|...+..+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999994444443
No 154
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.26 E-value=9.2 Score=25.80 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=49.4
Q ss_pred ccEEEecCCCCCCCH-----HHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCe-EEEEEe
Q 043634 19 LVTLLIKHLPDAIPQ-----DTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGK-VLSVER 91 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~-----~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~-~l~v~~ 91 (121)
.+.+.+.+++..+-. .....+|.+|-. ...++++. .+..-|.|.+...+..|...+++..+.|+ .++.-+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs---frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS---FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh---hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 566777777776333 234556666655 32333322 35677899999999999999999999988 777766
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
+
T Consensus 87 a 87 (193)
T KOG4019|consen 87 A 87 (193)
T ss_pred c
Confidence 6
No 155
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=61.81 E-value=16 Score=21.61 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=32.6
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhh-hCCccEEEcc-CCCcccEEEEEeCC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSH-YGASSVRPCS-AGRLRNCVFVDFGN 66 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~-~G~~~~~~~~-~~~~~g~afv~f~~ 66 (121)
+...-||||+++..+.+.--..+-.. .+.-.+.++. +....||.|-++.+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 44678999999999988655554444 3333355555 33445788888765
No 156
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.12 E-value=4.6 Score=23.87 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHh
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFS 41 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~ 41 (121)
+++|.|.|||....+++|++.+.
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 68899999999999999988764
No 157
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.00 E-value=1.5 Score=34.24 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=48.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEE--cc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRP--CS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV 86 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~--~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~ 86 (121)
-+.++++|++++++..+|..++..+-. ..+-+ +. ......+++|+|.-......|+-.||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 478999999999999999999988744 22211 11 2233457889998777777788888886665433
No 158
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=52.94 E-value=3.3 Score=28.85 Aligned_cols=69 Identities=28% Similarity=0.337 Sum_probs=52.3
Q ss_pred ccEEEecC----CCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 043634 19 LVTLLIKH----LPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVL 87 (121)
Q Consensus 19 ~~~l~V~n----lp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l 87 (121)
-.+++.|+ |...++++.+...|+..|. ..+++.. .|.++.++|+++......-.++..+.+...--+++
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 56677777 7777888888888988888 4455555 56788899999998888888888888765544443
No 159
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=52.80 E-value=22 Score=26.72 Aligned_cols=65 Identities=14% Similarity=0.293 Sum_probs=45.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-cc-EEEcc--C---CCcccEEEEEeCCHHHHHHHHHHhcCCeeC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SS-VRPCS--A---GRLRNCVFVDFGNEPLASQAQMQLNGLRFL 83 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~-~~~~~--~---~~~~g~afv~f~~~~~a~~ai~~l~g~~i~ 83 (121)
...|-|.+||+..++.+|..-..++-. .. ..+.. . ..-.+.+||.|...++...=...++|+.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 578889999999999998888877654 21 22221 1 112468899999988866666677776543
No 160
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.06 E-value=37 Score=24.45 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=23.3
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 60 VFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 60 afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
|||+|.+..+|+.+.+.+.... +..++++.|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999987654332 355577777
No 161
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.58 E-value=69 Score=18.68 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=38.6
Q ss_pred EEecCCCCCCCHHHHHHHHhh-hCC--ccEEEccCCCcccEEEEEeCCHHHHHHHHHHh
Q 043634 22 LLIKHLPDAIPQDTLSRIFSH-YGA--SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77 (121)
Q Consensus 22 l~V~nlp~~~~~~~L~~~f~~-~G~--~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l 77 (121)
-|+=-.+...+..++++.+.. ||. .++..+.......-|||.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 444456788999999999987 676 34444443334458999999888777664443
No 162
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.10 E-value=51 Score=18.25 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=21.6
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 043634 58 NCVFVDFGNEPLASQAQMQLNGLRFLGK 85 (121)
Q Consensus 58 g~afv~f~~~~~a~~ai~~l~g~~i~g~ 85 (121)
.+.++.|.+...|.++-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 4789999999999988887776555443
No 163
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=38.60 E-value=58 Score=16.61 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.6
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA 45 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~ 45 (121)
..+|+.+........+|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46778877768888999999999987
No 164
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=36.40 E-value=28 Score=16.97 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHhhhC
Q 043634 29 DAIPQDTLSRIFSHYG 44 (121)
Q Consensus 29 ~~~~~~~L~~~f~~~G 44 (121)
..+++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678899999998754
No 165
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.30 E-value=43 Score=23.65 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=25.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA 45 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~ 45 (121)
...+|+-|+|..++++.|.++.+..|-
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~ 66 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGH 66 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhh
Confidence 688999999999999999999999886
No 166
>PF14893 PNMA: PNMA
Probab=33.73 E-value=40 Score=24.98 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=34.9
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhh----hCCccEEEcc----CCCcccEEEEEeCCHH
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSH----YGASSVRPCS----AGRLRNCVFVDFGNEP 68 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~----~G~~~~~~~~----~~~~~g~afv~f~~~~ 68 (121)
+..+-+.|.|.+||.+++++++++.+.. .|. .+++. ...+..-++|+|....
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~--yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGR--YRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHHhhccccc--ceehhhHhhhhcccceeeeeccccc
Confidence 3455678899999999999988887753 455 33332 2223457788887543
No 167
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=32.79 E-value=1e+02 Score=17.66 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=37.9
Q ss_pred EEEecCCCCCCCHHHHHHHHhh-hCC--ccEEEccCCCcccEEEEEeCCHHHHHHHHHH
Q 043634 21 TLLIKHLPDAIPQDTLSRIFSH-YGA--SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQ 76 (121)
Q Consensus 21 ~l~V~nlp~~~~~~~L~~~f~~-~G~--~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~ 76 (121)
.-|+-..+...+..+++..+.. ||. .++..+.......-|||++.....|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 3455567889999999999986 676 3444433333345899999877777655433
No 168
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=32.51 E-value=99 Score=19.43 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=7.8
Q ss_pred cEEEEEeCCHH
Q 043634 58 NCVFVDFGNEP 68 (121)
Q Consensus 58 g~afv~f~~~~ 68 (121)
||-|+.|.+++
T Consensus 98 GFLYi~Ys~e~ 108 (121)
T PTZ00380 98 GFLYVSVRTEQ 108 (121)
T ss_pred CeEEEEEcccc
Confidence 67777777654
No 169
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.49 E-value=1.2e+02 Score=22.25 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=20.9
Q ss_pred ccEEEecCCCCC------------CCHHHHHHHHhhhCC
Q 043634 19 LVTLLIKHLPDA------------IPQDTLSRIFSHYGA 45 (121)
Q Consensus 19 ~~~l~V~nlp~~------------~~~~~L~~~f~~~G~ 45 (121)
+.+||+-+||-. -+++.|...|..||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ 187 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGE 187 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhcc
Confidence 567777777642 456789999999999
No 170
>PF15063 TC1: Thyroid cancer protein 1
Probab=30.20 E-value=55 Score=18.82 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA 45 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~ 45 (121)
.++--+.||=.++....|..+|..-|.
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD 51 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGD 51 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccc
Confidence 456667888899999999999999998
No 171
>PRK11901 hypothetical protein; Reviewed
Probab=29.69 E-value=2.4e+02 Score=21.01 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=36.8
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc---CCCcccEEE--EEeCCHHHHHHHHHHhc
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS---AGRLRNCVF--VDFGNEPLASQAQMQLN 78 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~---~~~~~g~af--v~f~~~~~a~~ai~~l~ 78 (121)
..+|-+... ..++.|+.+..+.+...+.+.. .|+. +|.. -.|.+.+.|..|+..|-
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQNLSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcCcCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCC
Confidence 456655553 4577888888777652244433 4433 4554 48999999999998886
No 172
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.52 E-value=57 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=19.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhh
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHY 43 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~ 43 (121)
....|+|||++++..-+..++...
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~ 119 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEK 119 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhcc
Confidence 355699999999999888888653
No 173
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=28.44 E-value=21 Score=19.91 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=16.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHH
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIF 40 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f 40 (121)
+..+|||.||..+-.+.=..++
T Consensus 27 Sr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 27 SRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred CceEEECCCChHHHHcCcchHH
Confidence 7899999999988776444433
No 174
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=27.93 E-value=1.2e+02 Score=17.13 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=35.3
Q ss_pred EEecCCCCCCCHHHHHHHHhhhCC----c-cEEEcc----CCCcccEEEEEeCCHHHHHHHHH
Q 043634 22 LLIKHLPDAIPQDTLSRIFSHYGA----S-SVRPCS----AGRLRNCVFVDFGNEPLASQAQM 75 (121)
Q Consensus 22 l~V~nlp~~~~~~~L~~~f~~~G~----~-~~~~~~----~~~~~g~afv~f~~~~~a~~ai~ 75 (121)
+-.+++|..++.++|..+....-. . .++++. ....+.||+..=.+.+...++-.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~ 65 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR 65 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH
Confidence 456789999999999888765422 2 466666 23445566666667766655543
No 175
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=27.81 E-value=29 Score=25.79 Aligned_cols=46 Identities=13% Similarity=-0.051 Sum_probs=32.5
Q ss_pred HHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 043634 34 DTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL 80 (121)
Q Consensus 34 ~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~ 80 (121)
..+.+++.+.|. ..-.+.+ --+.|.+|+-.-..+++++++..|.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~r-tFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYR-TFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHH-HhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 567777788886 2222222 234588899999999999999988864
No 176
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.75 E-value=7.8 Score=29.77 Aligned_cols=71 Identities=6% Similarity=-0.145 Sum_probs=47.9
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc------CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS------AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~------~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
...++..+|...+++++.-+|.-||. |.+.. .+.....+|++-.. ..+..+|.-+.-..+.|..+++..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~--i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSI--ISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcc--eeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45567788999999999999999998 43332 34455677877643 34445555554456667777777663
No 177
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.32 E-value=1.3e+02 Score=17.22 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCCe
Q 043634 53 AGRLRNCVFVDFGNEPLASQAQMQLNGLR 81 (121)
Q Consensus 53 ~~~~~g~afv~f~~~~~a~~ai~~l~g~~ 81 (121)
.+..+||-||+=.+..+...|+..+.+..
T Consensus 40 ~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 40 PDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp -TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred eCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 45568999999999999999987776443
No 178
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=26.19 E-value=1.6e+02 Score=18.09 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=7.4
Q ss_pred CCCCCCHHHHHHHHh
Q 043634 27 LPDAIPQDTLSRIFS 41 (121)
Q Consensus 27 lp~~~~~~~L~~~f~ 41 (121)
+|.+.+-.++..++.
T Consensus 47 Vp~~~tv~~f~~~ir 61 (112)
T cd01611 47 VPSDLTVGQFVYIIR 61 (112)
T ss_pred ecCCCCHHHHHHHHH
Confidence 445555555544444
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=25.08 E-value=82 Score=21.90 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=20.9
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhCC
Q 043634 21 TLLIKHLPDAIPQDTLSRIFSHYGA 45 (121)
Q Consensus 21 ~l~V~nlp~~~~~~~L~~~f~~~G~ 45 (121)
.+.|+|+|++++...|.+++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4779999999999999999975544
No 180
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=23.38 E-value=1.5e+02 Score=17.51 Aligned_cols=46 Identities=9% Similarity=0.123 Sum_probs=26.1
Q ss_pred ccEEEecCCCCCCCHHHHH---HHHhhhCC-ccEEE-----ccCCCcccEEEEEe
Q 043634 19 LVTLLIKHLPDAIPQDTLS---RIFSHYGA-SSVRP-----CSAGRLRNCVFVDF 64 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~---~~f~~~G~-~~~~~-----~~~~~~~g~afv~f 64 (121)
.-..|+.+||.++.+..+. ..|..+.. ..+.. ...+.+.|++.+-+
T Consensus 10 ~g~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 10 RGIAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 3456889999999886554 44555554 34443 12444556665443
No 181
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=23.27 E-value=83 Score=19.22 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.8
Q ss_pred cCCCCCCCHHHHHHHHhhhCC
Q 043634 25 KHLPDAIPQDTLSRIFSHYGA 45 (121)
Q Consensus 25 ~nlp~~~~~~~L~~~f~~~G~ 45 (121)
|.|...+++++|..++.+...
T Consensus 75 G~l~~kI~d~~L~~iL~~i~~ 95 (107)
T PF01984_consen 75 GQLRGKIDDEQLKEILEQISE 95 (107)
T ss_dssp TSSSS-B-HHHHHHHHHHHCC
T ss_pred CCCCCCcCHHHHHHHHHHHhh
Confidence 678889999999999998776
No 182
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=22.79 E-value=1.7e+02 Score=19.58 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHhhhCC-ccEEEccCC
Q 043634 29 DAIPQDTLSRIFSHYGA-SSVRPCSAG 54 (121)
Q Consensus 29 ~~~~~~~L~~~f~~~G~-~~~~~~~~~ 54 (121)
..+|-+++.++|.+|+. ..+.-+.+|
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~e~~~~~ 133 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHCEEMDNG 133 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEEEeecCC
Confidence 56899999999999998 444443343
No 183
>PRK00523 hypothetical protein; Provisional
Probab=22.75 E-value=1.1e+02 Score=17.39 Aligned_cols=18 Identities=11% Similarity=0.396 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHhhhCC
Q 043634 28 PDAIPQDTLSRIFSHYGA 45 (121)
Q Consensus 28 p~~~~~~~L~~~f~~~G~ 45 (121)
.+.++|+.|+.++.+.|.
T Consensus 37 NPpine~mir~M~~QMGq 54 (72)
T PRK00523 37 NPPITENMIRAMYMQMGR 54 (72)
T ss_pred CcCCCHHHHHHHHHHhCC
Confidence 356899999999999998
No 184
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.40 E-value=1.2e+02 Score=16.85 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHhhhCC
Q 043634 28 PDAIPQDTLSRIFSHYGA 45 (121)
Q Consensus 28 p~~~~~~~L~~~f~~~G~ 45 (121)
.+.++|+.|+.++.+.|.
T Consensus 29 NPpine~mir~M~~QMG~ 46 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGR 46 (64)
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 356899999999999998
No 185
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=21.91 E-value=52 Score=10.89 Aligned_cols=6 Identities=33% Similarity=0.777 Sum_probs=3.3
Q ss_pred EecCCC
Q 043634 23 LIKHLP 28 (121)
Q Consensus 23 ~V~nlp 28 (121)
||.|.|
T Consensus 2 ~i~nCP 7 (9)
T PF00220_consen 2 YIRNCP 7 (9)
T ss_pred ccccCC
Confidence 455555
No 186
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=21.85 E-value=2.5e+02 Score=18.84 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=22.8
Q ss_pred CCccEEEecCCCCCCC---HHHHHHHHhhhCC
Q 043634 17 ENLVTLLIKHLPDAIP---QDTLSRIFSHYGA 45 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~---~~~L~~~f~~~G~ 45 (121)
.++++|||.+|+-.-. -..|.+++-+-|.
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgk 60 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGK 60 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCc
Confidence 4489999999987643 3678888888887
No 187
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=21.47 E-value=1.2e+02 Score=15.14 Aligned_cols=19 Identities=5% Similarity=0.323 Sum_probs=15.3
Q ss_pred cCCCCCCCHHHHHHHHhhh
Q 043634 25 KHLPDAIPQDTLSRIFSHY 43 (121)
Q Consensus 25 ~nlp~~~~~~~L~~~f~~~ 43 (121)
=+|++.++.++|+..|...
T Consensus 6 Lgl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 6 LGVPPDASDEEIKKAYRKL 24 (55)
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 3678889999999888654
No 188
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.31 E-value=1.2e+02 Score=14.44 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHhhhCC
Q 043634 30 AIPQDTLSRIFSHYGA 45 (121)
Q Consensus 30 ~~~~~~L~~~f~~~G~ 45 (121)
..++++|+..+..+|.
T Consensus 3 tWs~~~L~~wL~~~gi 18 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGI 18 (38)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 4678999999999987
Done!