Query 043634
Match_columns 121
No_of_seqs 125 out of 1023
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2E-23 7E-28 125.9 10.6 77 18-95 18-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1.5E-21 5.1E-26 119.8 10.5 76 17-92 4-83 (110)
3 2cpz_A CUG triplet repeat RNA- 99.9 4.6E-21 1.6E-25 118.0 12.7 82 15-97 21-106 (115)
4 4f25_A Polyadenylate-binding p 99.9 1.5E-21 5.1E-26 120.5 10.5 75 19-93 5-81 (115)
5 2lxi_A RNA-binding protein 10; 99.9 9E-22 3.1E-26 116.9 8.7 79 19-98 1-85 (91)
6 2dgo_A Cytotoxic granule-assoc 99.9 7.8E-21 2.7E-25 116.9 12.4 85 13-98 9-97 (115)
7 2do4_A Squamous cell carcinoma 99.9 9.2E-21 3.2E-25 114.0 12.1 82 14-96 12-96 (100)
8 1x4a_A Splicing factor, argini 99.9 1.9E-20 6.4E-25 114.3 13.2 80 14-93 17-97 (109)
9 2lkz_A RNA-binding protein 5; 99.9 5.3E-21 1.8E-25 114.5 10.5 76 17-92 7-92 (95)
10 2cq3_A RNA-binding protein 9; 99.9 2.1E-20 7.2E-25 112.9 13.0 84 12-96 8-93 (103)
11 2cqi_A Nucleolysin TIAR; RNA r 99.9 2.2E-20 7.4E-25 112.9 13.0 81 13-93 9-91 (103)
12 2jrs_A RNA-binding protein 39; 99.9 5.6E-21 1.9E-25 116.8 10.4 83 13-96 20-106 (108)
13 1x5u_A Splicing factor 3B subu 99.9 7.9E-21 2.7E-25 115.1 11.0 82 14-96 10-95 (105)
14 2la6_A RNA-binding protein FUS 99.9 7E-21 2.4E-25 114.4 10.7 80 13-92 7-98 (99)
15 1x4h_A RNA-binding protein 28; 99.9 1.3E-20 4.3E-25 115.2 12.0 86 12-98 8-103 (111)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.2E-20 4E-25 113.8 11.7 79 15-93 8-90 (102)
17 1x5t_A Splicing factor 3B subu 99.9 1.1E-20 3.6E-25 112.8 11.3 79 17-96 3-86 (96)
18 2cq0_A Eukaryotic translation 99.9 9.4E-21 3.2E-25 114.5 11.0 81 15-96 11-95 (103)
19 2cqc_A Arginine/serine-rich sp 99.9 1.3E-20 4.4E-25 112.2 11.4 81 12-92 8-92 (95)
20 2cpe_A RNA-binding protein EWS 99.9 2E-20 7E-25 114.7 12.6 83 13-96 9-103 (113)
21 3bs9_A Nucleolysin TIA-1 isofo 99.9 8.2E-21 2.8E-25 111.3 10.3 76 17-92 4-83 (87)
22 1x5s_A Cold-inducible RNA-bind 99.9 1.2E-20 4E-25 113.8 11.2 79 15-93 8-90 (102)
23 2e5h_A Zinc finger CCHC-type a 99.9 1.4E-20 4.8E-25 111.9 11.2 78 15-92 12-93 (94)
24 1whw_A Hypothetical protein ri 99.9 1.8E-20 6E-25 112.5 11.6 80 16-96 5-88 (99)
25 2dnm_A SRP46 splicing factor; 99.9 1E-20 3.5E-25 114.4 10.6 81 13-93 7-91 (103)
26 2d9p_A Polyadenylate-binding p 99.9 1.1E-20 3.8E-25 114.2 10.6 83 13-96 9-93 (103)
27 2err_A Ataxin-2-binding protei 99.9 1.8E-20 6E-25 114.7 11.6 80 13-92 23-104 (109)
28 3md1_A Nuclear and cytoplasmic 99.9 1.3E-20 4.3E-25 109.6 10.5 76 20-96 2-81 (83)
29 2dnh_A Bruno-like 5, RNA bindi 99.8 1.7E-20 5.9E-25 113.6 11.5 78 16-93 12-95 (105)
30 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-20 4.6E-25 109.9 10.5 76 17-92 5-84 (85)
31 2dnz_A Probable RNA-binding pr 99.8 1.3E-20 4.3E-25 112.3 10.4 80 17-97 3-86 (95)
32 2dgs_A DAZ-associated protein 99.8 2.1E-20 7.3E-25 112.2 11.4 79 16-96 7-89 (99)
33 2x1f_A MRNA 3'-END-processing 99.8 1.7E-20 5.7E-25 112.1 10.8 75 18-92 1-79 (96)
34 2fc9_A NCL protein; structure 99.8 1.9E-20 6.5E-25 112.8 11.1 77 15-93 11-89 (101)
35 2m2b_A RNA-binding protein 10; 99.8 6.2E-21 2.1E-25 120.1 9.2 83 12-96 16-108 (131)
36 2cqp_A RNA-binding protein 12; 99.8 1.7E-20 5.9E-25 112.3 10.8 79 16-94 12-94 (98)
37 1oo0_B CG8781-PA, drosophila Y 99.8 1.6E-20 5.6E-25 114.7 10.7 80 13-92 20-103 (110)
38 2khc_A Testis-specific RNP-typ 99.8 1.1E-20 3.8E-25 116.8 10.0 77 16-92 37-117 (118)
39 2dgv_A HnRNP M, heterogeneous 99.8 1.3E-20 4.3E-25 111.7 9.7 78 16-93 5-84 (92)
40 2a3j_A U1 small nuclear ribonu 99.8 1.2E-20 4E-25 118.5 10.0 79 14-92 24-107 (127)
41 2dgp_A Bruno-like 4, RNA bindi 99.8 3.6E-20 1.2E-24 112.4 11.8 79 15-93 9-94 (106)
42 3p5t_L Cleavage and polyadenyl 99.8 2.6E-21 8.7E-26 114.5 6.5 73 20-92 2-80 (90)
43 1p27_B RNA-binding protein 8A; 99.8 1.3E-20 4.6E-25 114.3 9.8 80 13-92 17-100 (106)
44 2do0_A HnRNP M, heterogeneous 99.8 6E-20 2.1E-24 112.7 12.5 81 13-93 9-92 (114)
45 2dgx_A KIAA0430 protein; RRM d 99.8 5.5E-20 1.9E-24 110.0 11.8 79 17-96 7-90 (96)
46 2cph_A RNA binding motif prote 99.8 4.8E-20 1.6E-24 111.9 11.5 83 13-96 9-97 (107)
47 2cqd_A RNA-binding region cont 99.8 7.2E-20 2.5E-24 112.8 12.3 81 12-93 10-94 (116)
48 2ywk_A Putative RNA-binding pr 99.8 2.9E-20 9.7E-25 110.7 10.1 79 14-92 11-92 (95)
49 1fjc_A Nucleolin RBD2, protein 99.8 2.1E-20 7.3E-25 111.5 9.5 82 12-96 9-91 (96)
50 1u6f_A Tcubp1, RNA-binding pro 99.8 6.3E-20 2.2E-24 116.3 12.2 79 15-93 38-120 (139)
51 2fc8_A NCL protein; structure 99.8 3.2E-20 1.1E-24 111.9 10.3 83 13-98 9-94 (102)
52 1sjq_A Polypyrimidine tract-bi 99.8 2.4E-20 8.2E-25 113.4 9.7 76 15-93 12-90 (105)
53 2dng_A Eukaryotic translation 99.8 4.9E-20 1.7E-24 111.4 11.0 81 14-96 10-93 (103)
54 3ulh_A THO complex subunit 4; 99.8 3.7E-20 1.3E-24 112.5 10.5 80 13-92 23-105 (107)
55 1nu4_A U1A RNA binding domain; 99.8 1.4E-20 4.6E-25 112.5 8.4 78 15-92 4-86 (97)
56 1wi8_A EIF-4B, eukaryotic tran 99.8 5E-20 1.7E-24 111.5 11.0 81 14-96 10-94 (104)
57 2div_A TRNA selenocysteine ass 99.8 3.9E-20 1.3E-24 110.9 10.3 78 16-93 6-92 (99)
58 2cpf_A RNA binding motif prote 99.8 3.3E-20 1.1E-24 111.1 9.9 76 17-92 3-85 (98)
59 2fy1_A RNA-binding motif prote 99.8 4.8E-20 1.7E-24 113.9 10.8 79 16-94 4-85 (116)
60 2cq1_A PTB-like protein L; RRM 99.8 1E-19 3.6E-24 110.0 11.9 78 13-93 9-89 (101)
61 2e5j_A Methenyltetrahydrofolat 99.8 4.5E-20 1.5E-24 110.5 10.1 80 15-96 15-94 (97)
62 4a8x_A RNA-binding protein wit 99.8 4.8E-20 1.6E-24 108.2 9.8 77 18-94 3-84 (88)
63 2kxn_B Transformer-2 protein h 99.8 2.7E-20 9.2E-25 117.1 9.1 80 13-92 40-123 (129)
64 2rs2_A Musashi-1, RNA-binding 99.8 4.5E-20 1.5E-24 112.9 9.8 83 13-97 19-105 (109)
65 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.6E-21 1.9E-25 115.1 5.5 85 10-96 10-98 (100)
66 2ek1_A RNA-binding protein 12; 99.8 3.3E-20 1.1E-24 110.4 8.3 77 16-92 12-92 (95)
67 2jvo_A Nucleolar protein 3; nu 99.8 9.6E-20 3.3E-24 111.3 10.4 74 14-92 26-100 (108)
68 3ex7_B RNA-binding protein 8A; 99.8 5.9E-20 2E-24 114.7 9.6 81 13-93 16-100 (126)
69 2jvr_A Nucleolar protein 3; RN 99.8 1.3E-19 4.4E-24 111.3 11.0 76 17-93 26-103 (111)
70 2dhg_A TRNA selenocysteine ass 99.8 3.4E-20 1.2E-24 112.1 8.3 82 15-97 5-91 (104)
71 1fj7_A Nucleolin RBD1, protein 99.8 3E-20 1E-24 111.9 8.0 79 15-96 13-95 (101)
72 3r27_A HnRNP L, heterogeneous 99.8 8.5E-20 2.9E-24 110.0 9.8 75 15-92 17-94 (100)
73 2kt5_A RNA and export factor-b 99.8 2.6E-19 8.8E-24 111.6 12.4 79 15-93 31-112 (124)
74 2wbr_A GW182, gawky, LD47780P; 99.8 4.3E-20 1.5E-24 108.3 8.2 71 19-92 7-78 (89)
75 2dgw_A Probable RNA-binding pr 99.8 2E-19 6.8E-24 106.4 11.2 79 16-96 7-87 (91)
76 3s7r_A Heterogeneous nuclear r 99.8 9.7E-20 3.3E-24 106.8 9.8 77 15-92 7-87 (87)
77 2kn4_A Immunoglobulin G-bindin 99.8 2E-19 6.9E-24 116.1 12.1 78 16-93 67-148 (158)
78 2dh8_A DAZ-associated protein 99.8 7.6E-20 2.6E-24 110.8 9.3 82 14-97 11-96 (105)
79 1x4d_A Matrin 3; structural ge 99.8 6.2E-20 2.1E-24 111.1 8.8 78 13-93 9-90 (102)
80 2ad9_A Polypyrimidine tract-bi 99.8 1.6E-19 5.6E-24 112.0 10.9 78 13-93 25-105 (119)
81 3ns6_A Eukaryotic translation 99.8 2.6E-20 8.8E-25 112.3 7.0 75 18-92 5-90 (100)
82 3n9u_C Cleavage and polyadenyl 99.8 7.8E-20 2.7E-24 118.4 9.8 74 19-92 55-134 (156)
83 3ucg_A Polyadenylate-binding p 99.8 1.2E-19 4.1E-24 106.7 9.7 73 19-92 6-82 (89)
84 2nlw_A Eukaryotic translation 99.8 1.2E-19 4E-24 110.3 10.0 76 17-92 13-97 (105)
85 1x4c_A Splicing factor, argini 99.8 3.6E-19 1.2E-23 108.5 12.2 76 16-96 12-93 (108)
86 1why_A Hypothetical protein ri 99.8 3.1E-19 1.1E-23 106.7 11.6 80 13-96 11-93 (97)
87 2dgu_A Heterogeneous nuclear r 99.8 3.4E-19 1.2E-23 107.7 11.8 75 14-93 6-81 (103)
88 3lqv_A PRE-mRNA branch site pr 99.8 1E-19 3.5E-24 111.9 9.6 77 16-92 5-82 (115)
89 1wex_A Hypothetical protein (r 99.8 2E-19 6.7E-24 109.3 10.7 78 13-93 9-89 (104)
90 2cqg_A TDP-43, TAR DNA-binding 99.8 4.2E-19 1.4E-23 107.2 12.2 83 12-97 8-94 (103)
91 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.5E-19 8.6E-24 113.3 11.5 78 15-92 59-140 (140)
92 2dgt_A RNA-binding protein 30; 99.8 5.9E-19 2E-23 104.6 12.2 77 14-96 5-82 (92)
93 2cq4_A RNA binding motif prote 99.8 2.7E-19 9.1E-24 109.9 11.1 73 19-92 25-101 (114)
94 2lea_A Serine/arginine-rich sp 99.8 5.6E-20 1.9E-24 116.4 8.2 79 15-93 43-125 (135)
95 2dnq_A RNA-binding protein 4B; 99.8 2.6E-19 8.7E-24 105.7 10.4 73 16-93 5-78 (90)
96 1p1t_A Cleavage stimulation fa 99.8 4.1E-20 1.4E-24 111.7 7.0 75 18-92 7-85 (104)
97 2xnq_A Nuclear polyadenylated 99.8 3.8E-19 1.3E-23 106.6 11.1 75 13-92 16-92 (97)
98 2ytc_A PRE-mRNA-splicing facto 99.8 2E-19 6.7E-24 105.0 9.5 76 14-92 7-84 (85)
99 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.8E-19 6.1E-24 117.5 10.3 79 15-93 68-150 (165)
100 3egn_A RNA-binding protein 40; 99.8 2.2E-19 7.6E-24 114.4 10.4 78 16-93 42-128 (143)
101 2cpj_A Non-POU domain-containi 99.8 3.1E-19 1.1E-23 107.1 10.4 77 14-93 10-87 (99)
102 1wf1_A RNA-binding protein RAL 99.8 7.3E-19 2.5E-23 107.4 12.2 74 18-96 26-101 (110)
103 1h2v_Z 20 kDa nuclear CAP bind 99.8 4E-19 1.4E-23 114.7 11.6 77 17-93 37-117 (156)
104 2la4_A Nuclear and cytoplasmic 99.8 2E-19 6.7E-24 108.3 9.3 73 17-92 25-98 (101)
105 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-18 3.8E-23 104.7 12.6 79 14-97 10-90 (99)
106 1x4g_A Nucleolysin TIAR; struc 99.8 4.9E-19 1.7E-23 108.0 11.1 79 15-97 21-100 (109)
107 1wez_A HnRNP H', FTP-3, hetero 99.8 1.5E-19 5.1E-24 109.4 8.6 78 15-93 11-90 (102)
108 2cpi_A CCR4-NOT transcription 99.8 1.5E-19 5.1E-24 110.8 8.6 81 16-97 12-102 (111)
109 1x4b_A Heterogeneous nuclear r 99.8 1.8E-19 6E-24 111.1 8.9 78 19-98 27-108 (116)
110 2cpx_A Hypothetical protein FL 99.8 2.4E-19 8.1E-24 110.2 9.4 78 16-93 22-103 (115)
111 1s79_A Lupus LA protein; RRM, 99.8 1.7E-19 5.8E-24 109.4 8.6 75 17-92 9-86 (103)
112 1wg5_A Heterogeneous nuclear r 99.8 3.4E-19 1.2E-23 108.0 9.8 78 14-92 10-91 (104)
113 2dnp_A RNA-binding protein 14; 99.8 8.6E-19 3E-23 103.4 11.1 73 16-93 6-79 (90)
114 2mss_A Protein (musashi1); RNA 99.8 9.7E-20 3.3E-24 104.0 6.8 71 21-92 1-75 (75)
115 2jwn_A Embryonic polyadenylate 99.8 6.3E-20 2.1E-24 114.2 6.4 74 19-93 36-113 (124)
116 2cqh_A IGF-II mRNA-binding pro 99.8 4.2E-19 1.4E-23 105.3 9.6 76 17-96 6-83 (93)
117 2krb_A Eukaryotic translation 99.8 5.1E-20 1.8E-24 106.8 5.3 71 19-89 1-80 (81)
118 2db1_A Heterogeneous nuclear r 99.8 5.6E-19 1.9E-23 109.4 10.3 77 15-92 13-95 (118)
119 2dis_A Unnamed protein product 99.8 5.5E-19 1.9E-23 107.6 9.9 82 16-98 5-94 (109)
120 2cpy_A RNA-binding protein 12; 99.8 6.9E-19 2.4E-23 108.3 10.3 76 16-92 12-91 (114)
121 1x4e_A RNA binding motif, sing 99.8 3.9E-20 1.3E-24 108.1 4.3 76 17-92 3-82 (85)
122 1x5o_A RNA binding motif, sing 99.8 9.8E-19 3.3E-23 107.3 10.6 80 15-95 21-111 (114)
123 1wel_A RNA-binding protein 12; 99.8 2.5E-19 8.5E-24 111.7 7.7 75 17-92 23-101 (124)
124 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-19 5.4E-24 103.5 6.3 72 20-92 1-76 (77)
125 2hvz_A Splicing factor, argini 99.8 5.1E-19 1.8E-23 106.4 8.8 72 20-93 1-73 (101)
126 1x4f_A Matrin 3; structural ge 99.8 4.6E-19 1.6E-23 108.9 8.6 75 15-92 21-99 (112)
127 2dnn_A RNA-binding protein 12; 99.8 1.1E-18 3.7E-23 106.8 10.2 73 19-92 16-90 (109)
128 2ki2_A SS-DNA binding protein 99.8 9E-20 3.1E-24 107.6 4.9 72 20-92 2-77 (90)
129 2i2y_A Fusion protein consists 99.8 1.4E-18 4.8E-23 111.5 10.7 77 14-92 68-145 (150)
130 1whx_A Hypothetical protein ri 99.8 9.1E-19 3.1E-23 107.4 8.9 73 18-93 9-82 (111)
131 2kvi_A Nuclear polyadenylated 99.8 6.5E-19 2.2E-23 105.3 8.0 73 16-93 7-81 (96)
132 1x5p_A Negative elongation fac 99.8 3.7E-18 1.3E-22 102.0 11.2 75 16-96 12-87 (97)
133 2e44_A Insulin-like growth fac 99.8 3E-18 1E-22 102.1 10.4 78 17-96 13-92 (96)
134 2hgl_A HNRPF protein, heteroge 99.8 1.4E-18 4.8E-23 110.2 9.2 76 16-92 41-122 (136)
135 2lmi_A GRSF-1, G-rich sequence 99.8 6.1E-19 2.1E-23 107.4 7.1 77 15-92 7-89 (107)
136 2f3j_A RNA and export factor b 99.8 3.9E-18 1.3E-22 112.5 10.9 77 16-92 85-164 (177)
137 4f02_A Polyadenylate-binding p 99.8 2.8E-18 9.6E-23 115.7 10.2 78 16-93 12-93 (213)
138 3q2s_C Cleavage and polyadenyl 99.8 7E-19 2.4E-23 120.3 7.2 74 19-92 68-147 (229)
139 1wg1_A KIAA1579 protein, homol 99.8 3E-18 1E-22 100.8 9.0 72 17-92 3-75 (88)
140 1iqt_A AUF1, heterogeneous nuc 99.8 6.6E-19 2.3E-23 100.5 5.9 71 21-92 1-75 (75)
141 2diu_A KIAA0430 protein; struc 99.8 5.3E-18 1.8E-22 100.5 9.9 75 16-97 5-85 (96)
142 2hgm_A HNRPF protein, heteroge 99.8 7.1E-19 2.4E-23 110.2 6.2 78 14-92 37-118 (126)
143 2cq2_A Hypothetical protein LO 99.8 6.3E-18 2.2E-22 104.0 10.1 75 15-92 21-103 (114)
144 1sjr_A Polypyrimidine tract-bi 99.8 7.9E-18 2.7E-22 109.4 10.7 76 17-93 44-122 (164)
145 3md3_A Nuclear and cytoplasmic 99.8 1.4E-17 4.6E-22 107.2 11.6 78 15-92 83-164 (166)
146 1b7f_A Protein (SXL-lethal pro 99.8 1E-17 3.5E-22 108.2 10.7 76 18-93 2-81 (168)
147 1fxl_A Paraneoplastic encephal 99.8 1.3E-17 4.4E-22 107.4 11.1 75 19-93 2-80 (167)
148 2lcw_A RNA-binding protein FUS 99.6 6E-20 2E-24 113.2 0.0 80 16-96 4-95 (116)
149 2hzc_A Splicing factor U2AF 65 99.8 7E-18 2.4E-22 98.7 8.9 72 17-91 4-86 (87)
150 2xs2_A Deleted in azoospermia- 99.7 2.2E-18 7.4E-23 103.9 6.3 74 17-92 7-83 (102)
151 3zzy_A Polypyrimidine tract-bi 99.7 1.6E-17 5.5E-22 104.3 10.5 77 15-93 24-104 (130)
152 4f02_A Polyadenylate-binding p 99.7 6.6E-18 2.3E-22 113.9 9.0 77 19-96 103-181 (213)
153 2hgn_A Heterogeneous nuclear r 99.7 1.1E-18 3.6E-23 111.1 4.6 76 16-92 43-120 (139)
154 3pgw_S U1-70K; protein-RNA com 99.7 1.6E-17 5.6E-22 122.8 11.4 77 17-93 100-180 (437)
155 2e5i_A Heterogeneous nuclear r 99.7 3.9E-17 1.3E-21 101.9 11.3 74 19-96 25-102 (124)
156 2dha_A FLJ20171 protein; RRM d 99.7 6.6E-18 2.3E-22 105.4 7.6 75 17-92 21-102 (123)
157 3d2w_A TAR DNA-binding protein 99.7 2.1E-17 7.1E-22 97.6 9.4 75 15-96 7-84 (89)
158 3tyt_A Heterogeneous nuclear r 99.7 2.2E-17 7.7E-22 111.1 10.6 74 18-93 3-78 (205)
159 1fje_B Nucleolin RBD12, protei 99.7 2.4E-17 8.2E-22 107.4 10.3 77 17-96 97-174 (175)
160 3pgw_A U1-A; protein-RNA compl 99.7 2.5E-17 8.6E-22 114.8 11.0 79 15-93 5-88 (282)
161 2yh0_A Splicing factor U2AF 65 99.7 3.3E-17 1.1E-21 108.5 11.0 79 17-96 112-194 (198)
162 2e5g_A U6 snRNA-specific termi 99.7 3.3E-17 1.1E-21 97.4 9.7 73 17-92 6-79 (94)
163 1l3k_A Heterogeneous nuclear r 99.7 2.4E-17 8E-22 109.0 10.1 79 13-92 7-89 (196)
164 2g4b_A Splicing factor U2AF 65 99.7 2.9E-17 9.8E-22 106.6 10.0 76 17-92 92-171 (172)
165 3beg_B Splicing factor, argini 99.7 1.1E-17 3.9E-22 103.0 7.5 72 17-92 14-91 (115)
166 3md3_A Nuclear and cytoplasmic 99.7 3.8E-17 1.3E-21 105.1 9.6 74 20-93 1-77 (166)
167 2bz2_A Negative elongation fac 99.7 6.3E-17 2.1E-21 100.6 9.9 72 16-92 36-108 (121)
168 2qfj_A FBP-interacting repress 99.7 6E-17 2.1E-21 108.5 10.3 76 18-93 124-203 (216)
169 2dnl_A Cytoplasmic polyadenyla 99.7 4.7E-17 1.6E-21 100.0 8.6 74 17-92 6-85 (114)
170 2cjk_A Nuclear polyadenylated 99.7 3.3E-17 1.1E-21 105.8 7.8 76 19-96 87-166 (167)
171 1wf0_A TDP-43, TAR DNA-binding 99.7 3.7E-17 1.3E-21 96.0 7.1 76 17-97 3-79 (88)
172 2j8a_A Histone-lysine N-methyl 99.7 4E-17 1.4E-21 101.9 7.5 73 20-92 3-93 (136)
173 1l3k_A Heterogeneous nuclear r 99.7 1.4E-16 4.7E-21 105.3 9.6 78 18-97 103-184 (196)
174 3nmr_A Cugbp ELAV-like family 99.7 1.4E-16 4.7E-21 103.4 9.5 75 18-92 94-174 (175)
175 2qfj_A FBP-interacting repress 99.7 1.3E-16 4.5E-21 106.8 9.5 74 19-92 28-105 (216)
176 1fje_B Nucleolin RBD12, protei 99.7 9.2E-17 3.1E-21 104.6 8.5 78 15-93 9-89 (175)
177 1b7f_A Protein (SXL-lethal pro 99.7 1.9E-16 6.5E-21 102.2 9.9 76 17-92 87-168 (168)
178 2adc_A Polypyrimidine tract-bi 99.7 2E-16 6.8E-21 107.6 9.9 77 15-93 30-108 (229)
179 1fxl_A Paraneoplastic encephal 99.7 2.7E-16 9.4E-21 101.2 9.3 75 18-92 87-167 (167)
180 2voo_A Lupus LA protein; RNA-b 99.7 2.9E-16 9.9E-21 104.8 9.3 73 19-92 109-184 (193)
181 3pgw_A U1-A; protein-RNA compl 99.7 1.2E-15 4.1E-20 106.3 12.0 75 17-93 205-281 (282)
182 3smz_A Protein raver-1, ribonu 99.7 5.9E-16 2E-20 107.9 10.4 81 16-97 181-265 (284)
183 2dit_A HIV TAT specific factor 99.7 2.7E-15 9.4E-20 91.8 11.7 81 15-97 11-103 (112)
184 3u1l_A PRE-mRNA-splicing facto 99.7 1.9E-16 6.4E-21 108.8 7.1 74 17-93 132-227 (240)
185 3sde_A Paraspeckle component 1 99.7 6.6E-16 2.3E-20 107.0 9.9 74 16-92 19-93 (261)
186 2cjk_A Nuclear polyadenylated 99.7 4.6E-16 1.6E-20 100.4 8.2 73 18-92 2-78 (167)
187 2ghp_A U4/U6 snRNA-associated 99.6 7E-16 2.4E-20 107.9 9.4 79 16-96 207-291 (292)
188 2g4b_A Splicing factor U2AF 65 99.6 1.1E-15 3.6E-20 99.1 9.6 76 17-93 2-86 (172)
189 3nmr_A Cugbp ELAV-like family 99.6 7.7E-16 2.6E-20 99.8 8.8 75 18-92 2-85 (175)
190 2pe8_A Splicing factor 45; RRM 99.6 2.6E-15 8.9E-20 91.2 9.8 77 16-92 5-91 (105)
191 3tyt_A Heterogeneous nuclear r 99.6 1.4E-15 4.7E-20 102.3 9.3 76 17-92 121-204 (205)
192 2yh0_A Splicing factor U2AF 65 99.6 8.2E-16 2.8E-20 101.7 8.0 75 18-93 3-86 (198)
193 3smz_A Protein raver-1, ribonu 99.6 2.8E-15 9.5E-20 104.5 11.0 75 18-92 94-172 (284)
194 1qm9_A Polypyrimidine tract-bi 99.6 3E-15 1E-19 99.3 10.5 74 17-92 118-194 (198)
195 1qm9_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 101.0 8.6 73 19-93 3-77 (198)
196 2adc_A Polypyrimidine tract-bi 99.6 4.3E-15 1.5E-19 101.0 9.7 74 17-92 149-225 (229)
197 2ghp_A U4/U6 snRNA-associated 99.6 5E-15 1.7E-19 103.6 10.0 78 18-96 116-197 (292)
198 3sde_A Paraspeckle component 1 99.6 2.9E-14 1E-18 98.7 10.5 76 18-93 95-177 (261)
199 1jmt_A Splicing factor U2AF 35 99.5 4.1E-15 1.4E-19 90.1 3.8 69 24-92 20-103 (104)
200 3tht_A Alkylated DNA repair pr 99.5 7.3E-14 2.5E-18 100.3 10.5 77 13-92 12-96 (345)
201 3v4m_A Splicing factor U2AF 65 99.5 8.7E-14 3E-18 84.4 8.6 76 17-92 3-94 (105)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.7E-13 1.6E-17 80.5 7.8 71 19-93 10-88 (100)
203 3ue2_A Poly(U)-binding-splicin 99.4 9.8E-13 3.3E-17 81.3 9.0 75 18-92 19-106 (118)
204 3s6e_A RNA-binding protein 39; 99.4 1.2E-11 4.2E-16 75.9 10.4 74 18-92 6-90 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 2.7E-11 9.2E-16 71.1 8.2 74 17-96 5-87 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 4.2E-11 1.4E-15 74.1 8.9 78 13-92 12-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 2.7E-10 9.3E-15 67.1 6.5 70 17-92 13-92 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 2.5E-09 8.4E-14 72.1 7.1 62 31-92 141-210 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 3.5E-06 1.2E-10 50.8 9.7 72 18-92 20-97 (117)
210 1whv_A Poly(A)-specific ribonu 98.2 1.9E-05 6.7E-10 46.5 8.6 54 19-77 16-69 (100)
211 1wey_A Calcipressin 1; structu 98.1 1.5E-05 5E-10 47.7 6.8 74 17-93 3-82 (104)
212 1uw4_A UPF3X; nonsense mediate 97.8 0.00014 4.7E-09 42.5 6.9 65 20-84 2-72 (91)
213 2dhx_A Poly (ADP-ribose) polym 97.7 0.0004 1.4E-08 41.3 8.6 72 17-92 6-81 (104)
214 3ctr_A Poly(A)-specific ribonu 97.7 3.2E-05 1.1E-09 45.7 3.7 55 19-78 6-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.1 0.0037 1.3E-07 38.1 7.7 70 18-92 23-94 (119)
216 2l08_A Regulator of nonsense t 96.7 0.0018 6.1E-08 38.1 3.6 64 19-84 9-80 (97)
217 2kn4_A Immunoglobulin G-bindin 95.8 0.0097 3.3E-07 37.3 3.9 32 48-79 3-35 (158)
218 3p3d_A Nucleoporin 53; structu 95.6 0.065 2.2E-06 33.2 6.8 72 19-92 7-96 (132)
219 3d45_A Poly(A)-specific ribonu 95.4 0.14 4.9E-06 38.5 9.3 55 19-78 440-494 (507)
220 2i2y_A Fusion protein consists 95.3 0.0071 2.4E-07 37.8 1.8 38 54-92 10-48 (150)
221 3pq1_A Poly(A) RNA polymerase; 95.2 0.018 6.1E-07 42.9 4.0 53 20-75 54-107 (464)
222 2g0c_A ATP-dependent RNA helic 76.0 7.2 0.00025 20.9 5.3 69 21-92 2-74 (76)
223 4e8u_A Putative uncharacterize 75.7 8.1 0.00028 24.9 5.4 56 19-74 12-80 (172)
224 3ts2_A Protein LIN-28 homolog 36.8 6 0.0002 24.7 -0.4 28 34-65 2-29 (148)
225 1eij_A Hypothetical protein MT 30.5 51 0.0017 18.3 2.8 21 25-45 50-70 (80)
226 1o57_A PUR operon repressor; p 24.4 1.7E+02 0.006 20.0 5.6 41 36-78 47-88 (291)
227 3lpe_A Putative transcription 23.8 64 0.0022 18.0 2.5 25 55-79 48-72 (92)
228 2fh0_A Hypothetical 16.0 kDa p 23.2 62 0.0021 18.0 2.3 20 25-44 48-67 (81)
229 3fut_A Dimethyladenosine trans 20.3 77 0.0026 21.5 2.8 23 20-42 111-133 (271)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=125.92 Aligned_cols=77 Identities=32% Similarity=0.475 Sum_probs=71.2
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.+++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|.+|+..|||..++|+.|+|.+|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A- 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA- 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe-
Confidence 3789999999999999999999999999 6676665 6889999999999999999999999999999999999999
Q ss_pred CC
Q 043634 94 KP 95 (121)
Q Consensus 94 ~~ 95 (121)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 54
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=119.82 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=71.1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45889999999999999999999999999 6676665 6889999999999999999999999999999999999999
No 3
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=4.6e-21 Score=118.04 Aligned_cols=82 Identities=24% Similarity=0.333 Sum_probs=73.4
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..||+..|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3344799999999999999999999999999 6777665 68889999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 043634 91 RASKPNE 97 (121)
Q Consensus 91 ~a~~~~~ 97 (121)
++ .++.
T Consensus 101 ~a-~~~~ 106 (115)
T 2cpz_A 101 LK-RSKN 106 (115)
T ss_dssp CC-CCSC
T ss_pred Ec-CCCC
Confidence 99 4443
No 4
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.5e-21 Score=120.50 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=69.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.++|||+|||+.+++++|+++|++||. .+++++. .+.++|||||+|.+.++|..|+..|||..|+|+.|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 678999999999999999999999999 6677766 56678999999999999999999999999999999999993
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=9e-22 Score=116.91 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=69.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhC-C-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYG-A-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQL-NGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G-~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l-~g~~i~g~~l~v~~a 92 (121)
+.+|||+|||+.+++++|+++|++|| . ..++++. +|.++|||||+|.+.++|.+|++.+ ++..++|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 5 6677765 6889999999999999999999877 567899999999999
Q ss_pred CCCCcc
Q 043634 93 SKPNEE 98 (121)
Q Consensus 93 ~~~~~~ 98 (121)
.++.+
T Consensus 81 -~~~~~ 85 (91)
T 2lxi_A 81 -DPKPK 85 (91)
T ss_dssp -CSCCC
T ss_pred -CCCCC
Confidence 55443
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=7.8e-21 Score=116.95 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=74.7
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
.....+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344456899999999999999999999999999 6666665 678899999999999999999999999999999999
Q ss_pred EEecCCCCcc
Q 043634 89 VERASKPNEE 98 (121)
Q Consensus 89 v~~a~~~~~~ 98 (121)
|.++ .++..
T Consensus 89 V~~a-~~~~~ 97 (115)
T 2dgo_A 89 TNWA-TRKPP 97 (115)
T ss_dssp EEES-SCCCC
T ss_pred EEEc-cCCCC
Confidence 9999 44433
No 7
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.2e-21 Score=113.97 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=73.1
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
....+.++|||+|||+.+++++|+++|.+||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34455899999999999999999999999999 6666665 67888999999999999999999999999999999999
Q ss_pred ecCCCC
Q 043634 91 RASKPN 96 (121)
Q Consensus 91 ~a~~~~ 96 (121)
++ .++
T Consensus 92 ~a-~~~ 96 (100)
T 2do4_A 92 IS-NSG 96 (100)
T ss_dssp EC-CCC
T ss_pred EC-CCC
Confidence 99 544
No 8
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-20 Score=114.31 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=72.3
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....+.++|||+|||+.+++++|+++|++||. ..+.+...+.++|||||+|.+.++|..|+..||+..|+|+.|+|.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34445899999999999999999999999999 66666667778899999999999999999999999999999999999
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
+
T Consensus 97 ~ 97 (109)
T 1x4a_A 97 R 97 (109)
T ss_dssp C
T ss_pred c
Confidence 3
No 9
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=5.3e-21 Score=114.55 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=69.3
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC---ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCC----eeCCeE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA---SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGL----RFLGKV 86 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~---~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~----~i~g~~ 86 (121)
..-.+|||+|||+.+|+++|+++|++||. ..++++. +|.++|||||+|.+.++|.+|++.|||. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34789999999999999999999999995 4577766 7899999999999999999999999996 599999
Q ss_pred EEEEec
Q 043634 87 LSVERA 92 (121)
Q Consensus 87 l~v~~a 92 (121)
|.|++|
T Consensus 87 i~V~~A 92 (95)
T 2lkz_A 87 IGVDFA 92 (95)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999999
No 10
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-20 Score=112.94 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=73.3
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
......+.++|||+|||+.+++++|+++|++||. ..++++. .+.++|||||+|.+.++|..|+..||+..|+|+.|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3444555899999999999999999999999999 6666665 3447899999999999999999999999999999999
Q ss_pred EecCCCC
Q 043634 90 ERASKPN 96 (121)
Q Consensus 90 ~~a~~~~ 96 (121)
.++ .++
T Consensus 88 ~~a-~~~ 93 (103)
T 2cq3_A 88 NNA-TAR 93 (103)
T ss_dssp EEC-CSS
T ss_pred EEc-ccC
Confidence 999 443
No 11
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-20 Score=112.88 Aligned_cols=81 Identities=23% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
.....+.++|||+|||+.+++++|+++|++||. ..++++. .+.++|||||+|.+.++|..|+..||+..+.|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 334455899999999999999999999999999 6666666 44468999999999999999999999999999999999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
+++
T Consensus 89 ~a~ 91 (103)
T 2cqi_A 89 WAT 91 (103)
T ss_dssp ECC
T ss_pred ECC
Confidence 993
No 12
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=5.6e-21 Score=116.79 Aligned_cols=83 Identities=25% Similarity=0.431 Sum_probs=73.8
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
+....+.++|||+|||+.+++++|+.+|++||. ..++++. +|.++|||||+|.+.++|..|+..|||..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344455899999999999999999999999999 6666664 678899999999999999999999999999999999
Q ss_pred EEecCCCC
Q 043634 89 VERASKPN 96 (121)
Q Consensus 89 v~~a~~~~ 96 (121)
|.++ .++
T Consensus 100 V~~a-~~k 106 (108)
T 2jrs_A 100 VGHV-TER 106 (108)
T ss_dssp EECS-CSS
T ss_pred EEEc-ccC
Confidence 9999 544
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.9e-21 Score=115.14 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=73.4
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
....+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34455899999999999999999999999999 6666665 6788999999999999999999999999999999999
Q ss_pred EecCCCC
Q 043634 90 ERASKPN 96 (121)
Q Consensus 90 ~~a~~~~ 96 (121)
.++ .+.
T Consensus 90 ~~a-~~~ 95 (105)
T 1x5u_A 90 NKA-SAH 95 (105)
T ss_dssp EET-TTT
T ss_pred EEC-CCC
Confidence 999 443
No 14
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.86 E-value=7e-21 Score=114.37 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=72.1
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-cc--------EEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SS--------VRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGL 80 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~--------~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~ 80 (121)
+....+.++|||+|||+.+++++|+++|++||. .. ++++. +|.++|||||+|.+.++|..|+..|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 334455899999999999999999999999999 55 66665 6888999999999999999999999999
Q ss_pred eeCCeEEEEEec
Q 043634 81 RFLGKVLSVERA 92 (121)
Q Consensus 81 ~i~g~~l~v~~a 92 (121)
.++|+.|+|++|
T Consensus 87 ~~~g~~l~V~~A 98 (99)
T 2la6_A 87 EFSGNPIKVSFA 98 (99)
T ss_dssp BSSSSBCEEEEC
T ss_pred EeCCcEEEEEec
Confidence 999999999987
No 15
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-20 Score=115.21 Aligned_cols=86 Identities=21% Similarity=0.377 Sum_probs=75.2
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhc------CCe
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLN------GLR 81 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~------g~~ 81 (121)
.+....+.++|||+|||+.+++++|+.+|.+||. ..++++. ++.++|||||+|.+.++|..|+..|| +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 3444556899999999999999999999999999 6666665 57889999999999999999999999 999
Q ss_pred eCCeEEEEEecCCCCcc
Q 043634 82 FLGKVLSVERASKPNEE 98 (121)
Q Consensus 82 i~g~~l~v~~a~~~~~~ 98 (121)
++|+.|+|.++ .++..
T Consensus 88 ~~g~~l~v~~a-~~~~~ 103 (111)
T 1x4h_A 88 LDGRQLKVDLA-VTRDE 103 (111)
T ss_dssp SSSCEEEEECC-CCCCC
T ss_pred EcCEEEEEEEC-CCCcc
Confidence 99999999999 54433
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=113.81 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=72.3
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..||+..|+|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3445899999999999999999999999999 6777765 57889999999999999999999999999999999999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
+++
T Consensus 88 ~a~ 90 (102)
T 2cqb_A 88 LAK 90 (102)
T ss_dssp ECC
T ss_pred eCC
Confidence 993
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=112.79 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=72.1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccE-EEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSV-RPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~-~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
.+.++|||+|||+.+++++|+++|++||. ..+ +++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45899999999999999999999999999 666 7765 678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 043634 92 ASKPN 96 (121)
Q Consensus 92 a~~~~ 96 (121)
+ .++
T Consensus 83 a-~~~ 86 (96)
T 1x5t_A 83 A-FKK 86 (96)
T ss_dssp S-CCC
T ss_pred e-ccc
Confidence 9 443
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.4e-21 Score=114.49 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=73.1
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
+..+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4455899999999999999999999999999 6666664 67889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 043634 91 RASKPN 96 (121)
Q Consensus 91 ~a~~~~ 96 (121)
++ .++
T Consensus 91 ~a-~~~ 95 (103)
T 2cq0_A 91 WA-KPS 95 (103)
T ss_dssp ES-SCC
T ss_pred EC-CCC
Confidence 99 443
No 19
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=112.16 Aligned_cols=81 Identities=26% Similarity=0.346 Sum_probs=72.9
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVL 87 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l 87 (121)
......+.++|||+|||+.+++++|+++|++||. ..+.++. ++.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3444566899999999999999999999999999 6666654 57889999999999999999999999999999999
Q ss_pred EEEec
Q 043634 88 SVERA 92 (121)
Q Consensus 88 ~v~~a 92 (121)
+|.++
T Consensus 88 ~v~~a 92 (95)
T 2cqc_A 88 RVSGP 92 (95)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99998
No 20
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=114.75 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=73.7
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-c--------cEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-S--------SVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGL 80 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~--------~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~ 80 (121)
.....+.++|||+|||+.+++++|+++|.+||. . .++++. ++.++|||||+|.+.++|..|+..|||.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 344556899999999999999999999999999 5 466665 6788999999999999999999999999
Q ss_pred eeCCeEEEEEecCCCC
Q 043634 81 RFLGKVLSVERASKPN 96 (121)
Q Consensus 81 ~i~g~~l~v~~a~~~~ 96 (121)
.|+|+.|+|.++ .++
T Consensus 89 ~~~g~~l~V~~a-~~~ 103 (113)
T 2cpe_A 89 DFQGSKLKVSLA-RKK 103 (113)
T ss_dssp EETTEECEEECS-SCC
T ss_pred ccCCCEEEEEEC-CCC
Confidence 999999999999 443
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=8.2e-21 Score=111.32 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=69.4
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.++|||+|||..+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34789999999999999999999999999 6666655 6788999999999999999999999999999999999999
No 22
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=113.82 Aligned_cols=79 Identities=29% Similarity=0.388 Sum_probs=72.5
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..||+..++|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3455899999999999999999999999999 7777776 67789999999999999999999999999999999999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
+++
T Consensus 88 ~a~ 90 (102)
T 1x5s_A 88 QAG 90 (102)
T ss_dssp EEE
T ss_pred ECC
Confidence 993
No 23
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=111.85 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=71.2
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..||+..++|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3445899999999999999999999999999 6676665 57789999999999999999999999999999999999
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
++
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 98
No 24
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-20 Score=112.49 Aligned_cols=80 Identities=23% Similarity=0.357 Sum_probs=72.3
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 355899999999999999999999999999 5666655 678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 043634 92 ASKPN 96 (121)
Q Consensus 92 a~~~~ 96 (121)
+ .++
T Consensus 85 a-~~~ 88 (99)
T 1whw_A 85 S-TIK 88 (99)
T ss_dssp C-CCC
T ss_pred c-CCC
Confidence 9 443
No 25
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=114.36 Aligned_cols=81 Identities=26% Similarity=0.422 Sum_probs=72.8
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
++...+.++|||+|||+.+++++|+++|++||. ..+.++. ++.++|||||+|.+.++|..|+..|||..++|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344555899999999999999999999999999 5666665 578899999999999999999999999999999999
Q ss_pred EEecC
Q 043634 89 VERAS 93 (121)
Q Consensus 89 v~~a~ 93 (121)
|.+++
T Consensus 87 V~~a~ 91 (103)
T 2dnm_A 87 VQVAR 91 (103)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99994
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=114.19 Aligned_cols=83 Identities=29% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
.....+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 344456899999999999999999999999999 5666655 67889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 043634 91 RASKPN 96 (121)
Q Consensus 91 ~a~~~~ 96 (121)
++ .++
T Consensus 89 ~a-~~~ 93 (103)
T 2d9p_A 89 LA-QRK 93 (103)
T ss_dssp EC-SSC
T ss_pred Ee-ccc
Confidence 99 443
No 27
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-20 Score=114.67 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=72.4
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
.....+.++|||+|||..+++++|+++|++||. ..++++. .+.++|||||+|.+.++|..|+..|||..++|+.|+|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 334445899999999999999999999999999 7788776 45578999999999999999999999999999999999
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
++
T Consensus 103 ~a 104 (109)
T 2err_A 103 NA 104 (109)
T ss_dssp EC
T ss_pred EC
Confidence 99
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.3e-20 Score=109.60 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=69.5
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKP 95 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 95 (121)
++|||+|||+.+++++|+++|++||. ..+.++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|.++ .+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a-~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA-AK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC-CC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec-Cc
Confidence 68999999999999999999999999 6666664 6888999999999999999999999999999999999999 44
Q ss_pred C
Q 043634 96 N 96 (121)
Q Consensus 96 ~ 96 (121)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.7e-20 Score=113.62 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=71.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCC---eEEEE
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG---KVLSV 89 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g---~~l~v 89 (121)
..+.++|||+|||+.+++++|+.+|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345899999999999999999999999999 6666665 67889999999999999999999999999998 99999
Q ss_pred EecC
Q 043634 90 ERAS 93 (121)
Q Consensus 90 ~~a~ 93 (121)
.+++
T Consensus 92 ~~a~ 95 (105)
T 2dnh_A 92 KFAD 95 (105)
T ss_dssp EESC
T ss_pred EECc
Confidence 9993
No 30
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=1.4e-20 Score=109.92 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=69.9
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45899999999999999999999999999 5566554 6778999999999999999999999999999999999988
No 31
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=112.27 Aligned_cols=80 Identities=25% Similarity=0.393 Sum_probs=72.2
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45899999999999999999999999999 6666665 5788999999999999999999999999999999999999
Q ss_pred CCCCc
Q 043634 93 SKPNE 97 (121)
Q Consensus 93 ~~~~~ 97 (121)
.++.
T Consensus 83 -~~~~ 86 (95)
T 2dnz_A 83 -TERL 86 (95)
T ss_dssp -SCCC
T ss_pred -cccc
Confidence 4443
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=112.17 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=71.4
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+. +|+..++|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 445899999999999999999999999999 6677765 57889999999999999999998 999999999999999
Q ss_pred cCCCC
Q 043634 92 ASKPN 96 (121)
Q Consensus 92 a~~~~ 96 (121)
+ .++
T Consensus 86 a-~~~ 89 (99)
T 2dgs_A 86 A-EPR 89 (99)
T ss_dssp C-CCC
T ss_pred C-CCC
Confidence 9 443
No 33
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=1.7e-20 Score=112.13 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=69.7
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
|.++|||+|||..+++++|+++|++||. ..++++. +|.++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 4689999999999999999999999999 6666665 5788999999999999999999999999999999999999
No 34
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=112.77 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=70.8
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...+.++|||+|||+.+++++|+++|.+||. |+++. ++.++|||||+|.+.++|..|+..||+..|+|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATF--IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSE--EECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCE--EEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4455899999999999999999999999998 66665 7788999999999999999999999999999999999999
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
+
T Consensus 89 ~ 89 (101)
T 2fc9_A 89 G 89 (101)
T ss_dssp S
T ss_pred C
Confidence 3
No 35
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=120.13 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=73.7
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-cc--EEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCC----e
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SS--VRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGL----R 81 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~--~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~----~ 81 (121)
.+....+.++|||+|||+.+++++|+++|.+||. .. ++++. +|.++|||||+|.+. +|..|+..|||. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3444456899999999999999999999999999 55 67776 788999999999999 999999999999 9
Q ss_pred eCCeEEEEEecCCCC
Q 043634 82 FLGKVLSVERASKPN 96 (121)
Q Consensus 82 i~g~~l~v~~a~~~~ 96 (121)
++|+.|+|.++ .++
T Consensus 95 ~~gr~l~V~~a-~~~ 108 (131)
T 2m2b_A 95 IDGKTINVEFA-KGS 108 (131)
T ss_dssp GGGCCCCCEEC-CCS
T ss_pred CCCEEEEEEEC-CCC
Confidence 99999999999 443
No 36
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=112.33 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
....++|||+|||+.+++++|+++|.+||. ..+.++. ++.++|||||+|.+.++|..|+..|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 344799999999999999999999999999 4444443 788899999999999999999999999999999999999
Q ss_pred cCC
Q 043634 92 ASK 94 (121)
Q Consensus 92 a~~ 94 (121)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 943
No 37
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=1.6e-20 Score=114.67 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=72.2
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
+....+.++|||+|||+.+++++|+.+|++||. ..+.++. +|.++|||||+|.+.++|..|+..|||..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 334455899999999999999999999999999 6666664 678899999999999999999999999999999999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|.++
T Consensus 100 V~~a 103 (110)
T 1oo0_B 100 VDWC 103 (110)
T ss_dssp EEES
T ss_pred EEEc
Confidence 9999
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=1.1e-20 Score=116.77 Aligned_cols=77 Identities=26% Similarity=0.318 Sum_probs=70.5
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 344799999999999999999999999999 6677765 678899999999999999999999999999999999998
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 39
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=1.3e-20 Score=111.66 Aligned_cols=78 Identities=19% Similarity=0.359 Sum_probs=71.5
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..||+..++|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 345899999999999999999999999999 6666665 78889999999999999999999999999999999999993
No 40
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=118.52 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=71.0
Q ss_pred CCCCCccEEEecCCCCCCCHHHHH----HHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLS----RIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~----~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
....+.++|||+|||+.+++++|+ .+|++||. ..+.+..++.++|||||+|.+.++|..|+..|||..+.|+.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 344568999999999999999876 69999999 5666666788999999999999999999999999999999999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|.++
T Consensus 104 V~~a 107 (127)
T 2a3j_A 104 ITFS 107 (127)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9999
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=3.6e-20 Score=112.38 Aligned_cols=79 Identities=19% Similarity=0.435 Sum_probs=71.9
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCee---CCeEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRF---LGKVL 87 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i---~g~~l 87 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..||+..+ +|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3455899999999999999999999999999 6777766 588899999999999999999999999988 89999
Q ss_pred EEEecC
Q 043634 88 SVERAS 93 (121)
Q Consensus 88 ~v~~a~ 93 (121)
+|.++.
T Consensus 89 ~v~~a~ 94 (106)
T 2dgp_A 89 QVKPAD 94 (106)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999993
No 42
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.6e-21 Score=114.53 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=66.2
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhC--C-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYG--A-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G--~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+|||+|||+.+++++|+++|++|| . ..++++. +|.++|||||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 5799999999999999999999999 7 6677665 7889999999999999999999999999999999999999
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=114.30 Aligned_cols=80 Identities=20% Similarity=0.356 Sum_probs=72.0
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
+....+.++|||+|||+.+++++|+.+|++||. ..+.++. +|.++|||||+|.+.++|..|+..|||..++|+.|+
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 333445799999999999999999999999999 6666654 588899999999999999999999999999999999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|.++
T Consensus 97 V~~a 100 (106)
T 1p27_B 97 VDWC 100 (106)
T ss_dssp EEES
T ss_pred EEee
Confidence 9999
No 44
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6e-20 Score=112.73 Aligned_cols=81 Identities=21% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
.....+.++|||+|||+.+++++|+++|.+||. ..++++. ++.++|||||+|.+.++|..|+..||+..|+|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344455899999999999999999999999999 5666655 6778999999999999999999999999999999999
Q ss_pred EecC
Q 043634 90 ERAS 93 (121)
Q Consensus 90 ~~a~ 93 (121)
.+++
T Consensus 89 ~~a~ 92 (114)
T 2do0_A 89 KMDE 92 (114)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9994
No 45
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-20 Score=110.01 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=69.9
Q ss_pred CCccEEEecCCCCCCCHHHHH----HHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 17 ENLVTLLIKHLPDAIPQDTLS----RIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~----~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
...++|||+|||+.+++++|+ ++|++||. ..++++.....+|||||+|.+.++|..|+..|||..++|+.|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 447999999999999999999 99999999 6677775222289999999999999999999999999999999999
Q ss_pred cCCCC
Q 043634 92 ASKPN 96 (121)
Q Consensus 92 a~~~~ 96 (121)
+ .++
T Consensus 87 a-~~~ 90 (96)
T 2dgx_A 87 A-TGA 90 (96)
T ss_dssp C-CCS
T ss_pred c-CCC
Confidence 9 444
No 46
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.8e-20 Score=111.94 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=72.7
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc----CCCcccEEEEEeCCHHHHHHHHHHh-cCCeeCCeE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQL-NGLRFLGKV 86 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~----~~~~~g~afv~f~~~~~a~~ai~~l-~g~~i~g~~ 86 (121)
.....+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..| |+..|+|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 334455899999999999999999999999999 5666643 5677899999999999999999999 999999999
Q ss_pred EEEEecCCCC
Q 043634 87 LSVERASKPN 96 (121)
Q Consensus 87 l~v~~a~~~~ 96 (121)
|+|.++ .++
T Consensus 89 l~v~~a-~~~ 97 (107)
T 2cph_A 89 LVLEWA-DSE 97 (107)
T ss_dssp CEEEEC-CCC
T ss_pred EEEEeC-CCC
Confidence 999999 443
No 47
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.2e-20 Score=112.82 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=72.6
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVL 87 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l 87 (121)
......+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|.+|+..+++ .|+|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 3444556899999999999999999999999999 6677766 578899999999999999999999998 8999999
Q ss_pred EEEecC
Q 043634 88 SVERAS 93 (121)
Q Consensus 88 ~v~~a~ 93 (121)
+|.++.
T Consensus 89 ~V~~a~ 94 (116)
T 2cqd_A 89 NVNLAY 94 (116)
T ss_dssp EEEEST
T ss_pred EEEEcc
Confidence 999993
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=110.71 Aligned_cols=79 Identities=25% Similarity=0.428 Sum_probs=71.2
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
....+.++|||+|||+.+++++|+++|++||. ..++++. .+.++|||||+|.+.++|..|+..||+..++|+.|+|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34455899999999999999999999999999 6666665 67788999999999999999999999999999999999
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
++
T Consensus 91 ~a 92 (95)
T 2ywk_A 91 GP 92 (95)
T ss_dssp CC
T ss_pred Ec
Confidence 98
No 49
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=111.54 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=71.8
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
......+.++|||+|||+.+++++|+++|++||. ++.+. ++.++|||||+|.+.++|..|+..|||..++|+.|+|.
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~--v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALE--IRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEE--ECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCc--EEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3344456899999999999999999999999998 43334 78889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 043634 91 RASKPN 96 (121)
Q Consensus 91 ~a~~~~ 96 (121)
++ .++
T Consensus 87 ~a-~~~ 91 (96)
T 1fjc_A 87 YT-GEK 91 (96)
T ss_dssp EC-SSS
T ss_pred Ec-CCC
Confidence 99 443
No 50
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=6.3e-20 Score=116.29 Aligned_cols=79 Identities=32% Similarity=0.489 Sum_probs=71.4
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
+..+.++|||+|||+.+++++|+++|+.||. ..++++. ++.++|||||+|.+.++|.+|+..|||..|+|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3344799999999999999999999999999 6666665 67889999999999999999999999999999999999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
+++
T Consensus 118 ~a~ 120 (139)
T 1u6f_A 118 LAA 120 (139)
T ss_dssp ESS
T ss_pred ECC
Confidence 993
No 51
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=111.88 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=72.4
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
.....+.++|||+|||+.+++++|+++|+.|+. ++++. ++.++|||||+|.+.++|..|+..||+..|+|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~--~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVR--ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSE--EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeE--EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344556899999999999999999999998876 55554 7788999999999999999999999999999999999
Q ss_pred EecCCCCcc
Q 043634 90 ERASKPNEE 98 (121)
Q Consensus 90 ~~a~~~~~~ 98 (121)
.++ .++..
T Consensus 87 ~~a-~~~~~ 94 (102)
T 2fc8_A 87 DWA-KPKGE 94 (102)
T ss_dssp EEC-CCCCS
T ss_pred EEe-cCCCC
Confidence 999 54433
No 52
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=113.36 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=67.0
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcC--CeeCCeEEEEEe
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG--LRFLGKVLSVER 91 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g--~~i~g~~l~v~~ 91 (121)
+..+.++|||+|||+.+++++|+++|++||. ..++++.. +|||||+|.+.++|..|+..|++ ..+.|+.|+|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3456899999999999999999999999999 55665543 79999999999999999998864 789999999999
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
++
T Consensus 89 A~ 90 (105)
T 1sjq_A 89 SN 90 (105)
T ss_dssp CS
T ss_pred cC
Confidence 93
No 53
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.9e-20 Score=111.38 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=71.2
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
....+.++|||+|||+.+++++|+++|++||...++++. ++.++|||||+|.+.++|..|+ .||+..|+|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 334558999999999999999999999999755566655 6888999999999999999999 899999999999999
Q ss_pred ecCCCC
Q 043634 91 RASKPN 96 (121)
Q Consensus 91 ~a~~~~ 96 (121)
++ .++
T Consensus 89 ~a-~~~ 93 (103)
T 2dng_A 89 IA-EGR 93 (103)
T ss_dssp EC-CCC
T ss_pred Ee-cCC
Confidence 99 443
No 54
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=3.7e-20 Score=112.49 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=72.1
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
.....+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344556899999999999999999999999999 6666665 7788999999999999999999999999999999999
Q ss_pred Eec
Q 043634 90 ERA 92 (121)
Q Consensus 90 ~~a 92 (121)
.++
T Consensus 103 ~~a 105 (107)
T 3ulh_A 103 QLV 105 (107)
T ss_dssp EEE
T ss_pred EEe
Confidence 988
No 55
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=1.4e-20 Score=112.52 Aligned_cols=78 Identities=28% Similarity=0.426 Sum_probs=70.2
Q ss_pred CCCCccEEEecCCCCCCCHHHHH----HHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLS----RIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~----~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
+..+.++|||+|||+.+++++|+ .+|++||. ..+.++.+|.++|||||+|.+.++|..|+..|||..++|+.|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34568999999999999999999 99999999 55666557778899999999999999999999999999999999
Q ss_pred Eec
Q 043634 90 ERA 92 (121)
Q Consensus 90 ~~a 92 (121)
.++
T Consensus 84 ~~a 86 (97)
T 1nu4_A 84 QYA 86 (97)
T ss_dssp EEC
T ss_pred EEc
Confidence 999
No 56
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5e-20 Score=111.51 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=70.8
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc---C-CCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS---A-GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~---~-~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
....+.++|||+|||+.+++++|+++|.+||...++++. + +.++|||||+|.+.++|..|+ .||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 334558999999999999999999999999954455555 3 788999999999999999999 99999999999999
Q ss_pred EecCCCC
Q 043634 90 ERASKPN 96 (121)
Q Consensus 90 ~~a~~~~ 96 (121)
.++ .++
T Consensus 89 ~~a-~~~ 94 (104)
T 1wi8_A 89 DVA-DQA 94 (104)
T ss_dssp EEC-CCC
T ss_pred EEc-cCC
Confidence 999 443
No 57
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=110.93 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=71.7
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-c-cEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE----
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-S-SVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV---- 86 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~-~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~---- 86 (121)
..+.++|||+|||+.+++++|+++|++||. . .++++. ++.++|||||+|.+.++|..|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 345899999999999999999999999999 6 777765 6788999999999999999999999999999999
Q ss_pred EEEEecC
Q 043634 87 LSVERAS 93 (121)
Q Consensus 87 l~v~~a~ 93 (121)
|+|.+++
T Consensus 86 l~v~~a~ 92 (99)
T 2div_A 86 FKLNYAT 92 (99)
T ss_dssp CCEEETT
T ss_pred EEEeecC
Confidence 9999993
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=111.07 Aligned_cols=76 Identities=28% Similarity=0.289 Sum_probs=69.3
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc------CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS------AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~------~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
.+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45899999999999999999999999999 6666664 2277899999999999999999999999999999999
Q ss_pred Eec
Q 043634 90 ERA 92 (121)
Q Consensus 90 ~~a 92 (121)
.++
T Consensus 83 ~~a 85 (98)
T 2cpf_A 83 RIS 85 (98)
T ss_dssp ECS
T ss_pred EEc
Confidence 999
No 59
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=113.91 Aligned_cols=79 Identities=28% Similarity=0.397 Sum_probs=72.5
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..+.++|||+|||+.+++++|+++|++||. ..+.++. ++.++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345799999999999999999999999999 6777776 7888999999999999999999999999999999999999
Q ss_pred CC
Q 043634 93 SK 94 (121)
Q Consensus 93 ~~ 94 (121)
+.
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 60
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1e-19 Score=109.99 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN--GLRFLGKVLSV 89 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~--g~~i~g~~l~v 89 (121)
.....+.++|||+|||+.+++++|+.+|++||. ..+.++.. +|||||+|.+.++|..|+..|+ +..+.|+.|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 444556899999999999999999999999999 55555432 7999999999999999999874 67899999999
Q ss_pred EecC
Q 043634 90 ERAS 93 (121)
Q Consensus 90 ~~a~ 93 (121)
.+++
T Consensus 86 ~~a~ 89 (101)
T 2cq1_A 86 QYSN 89 (101)
T ss_dssp EECS
T ss_pred EEcC
Confidence 9994
No 61
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=110.48 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=69.6
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
.....++|||+|||+.+++++|+++|++||...+.++ .+.++|||||+|.+.++|..|+..|||..++|+.|+|.++ .
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a-~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA-R 92 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC-C
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc-C
Confidence 3444899999999999999999999999999323333 4567899999999999999999999999999999999999 4
Q ss_pred CC
Q 043634 95 PN 96 (121)
Q Consensus 95 ~~ 96 (121)
++
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 62
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=108.17 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=68.5
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCC-cccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGR-LRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~-~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+++|||+|||+.+++++|+++|++||. ..+.++. ++. ++|||||+|.+.++|..|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3689999999999999999999999999 5555555 223 7899999999999999999999999999999999999
Q ss_pred CC
Q 043634 93 SK 94 (121)
Q Consensus 93 ~~ 94 (121)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 63
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2.7e-20 Score=117.12 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=72.5
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
.....+.++|||+|||+.+++++|+++|++||. ..++++. ++..+|||||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344555899999999999999999999999999 6666665 578899999999999999999999999999999999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|.++
T Consensus 120 V~~a 123 (129)
T 2kxn_B 120 VDFS 123 (129)
T ss_dssp ESCC
T ss_pred EEEe
Confidence 9999
No 64
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=4.5e-20 Score=112.86 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=68.7
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
.....+.++|||+|||+.+++++|+.+|+.||. ..++++. +|.++|||||+|.+.++|..|+..+ +..++|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 334445899999999999999999999999999 6677765 5888999999999999999999876 5999999999
Q ss_pred EEecCCCCc
Q 043634 89 VERASKPNE 97 (121)
Q Consensus 89 v~~a~~~~~ 97 (121)
|.++ .++.
T Consensus 98 V~~a-~~~~ 105 (109)
T 2rs2_A 98 PKVA-FPRR 105 (109)
T ss_dssp EEEC-CCCC
T ss_pred EEEc-cCCC
Confidence 9999 5443
No 65
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-21 Score=115.14 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=67.1
Q ss_pred CCCCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc----CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 043634 10 PQNKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGK 85 (121)
Q Consensus 10 ~~~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~----~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~ 85 (121)
..........++|||+|||+.+++++|+++|++||...++++. +|.++|||||+|.+.++|..|+ .|||..++|+
T Consensus 10 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 10 HRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ----------CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3344445558999999999999999999999999953455553 5778999999999999999999 8999999999
Q ss_pred EEEEEecCCCC
Q 043634 86 VLSVERASKPN 96 (121)
Q Consensus 86 ~l~v~~a~~~~ 96 (121)
.|+|.++ .++
T Consensus 89 ~l~V~~a-~~~ 98 (100)
T 2j76_E 89 RIRVDVA-DQA 98 (100)
T ss_dssp CCCCEEC-CCS
T ss_pred EEEEEec-cCC
Confidence 9999999 443
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=3.3e-20 Score=110.41 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
.++.++|||+|||+.+++++|+++|.+||. ..+.++. ++.++|||||+|.+.++|.+|+..||+..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 344799999999999999999999999999 5454443 778899999999999999999999999999999999998
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
+
T Consensus 92 a 92 (95)
T 2ek1_A 92 P 92 (95)
T ss_dssp C
T ss_pred c
Confidence 7
No 67
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=9.6e-20 Score=111.29 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=67.1
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....+.++|||+|||+.+++++|+++|++||. ..+.++ +|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34445899999999999999999999999999 666665 689999999999999999999999999999999999
No 68
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=5.9e-20 Score=114.66 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=72.3
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
+....+.++|||+|||+.+++++|+.+|++||. ..+.++. ++.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 334445899999999999999999999999999 5566654 678899999999999999999999999999999999
Q ss_pred EEecC
Q 043634 89 VERAS 93 (121)
Q Consensus 89 v~~a~ 93 (121)
|.++.
T Consensus 96 v~~a~ 100 (126)
T 3ex7_B 96 VDWCF 100 (126)
T ss_dssp EEESE
T ss_pred EEEec
Confidence 99993
No 69
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=1.3e-19 Score=111.31 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=67.7
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhC-C-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG-A-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G-~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
...++|||+|||+.+++++|+++|++|| . ..+.+. .+.++|||||+|.+.++|+.|+..|||..++|+.|+|.++.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~-~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN-TRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS-SCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE-cCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3479999999999999999999999999 6 444443 34678999999999999999999999999999999999994
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.4e-20 Score=112.12 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=73.0
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhh-hCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCe-eCCeEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSH-YGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLR-FLGKVLSV 89 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~-~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~-i~g~~l~v 89 (121)
+..+.++|||+|||+.+++++|+++|++ ||. ..++++. ++.++|||||+|.+.++|..|+..||+.. ++|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3455899999999999999999999999 999 6666665 78889999999999999999999999999 99999999
Q ss_pred EecCCCCc
Q 043634 90 ERASKPNE 97 (121)
Q Consensus 90 ~~a~~~~~ 97 (121)
.++ .++.
T Consensus 85 ~~a-~~~~ 91 (104)
T 2dhg_A 85 SVA-IPKA 91 (104)
T ss_dssp CBC-CCCC
T ss_pred EEc-cCCC
Confidence 999 4443
No 71
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=111.89 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=69.2
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||+.+++++|+.+|++||. .. .++. ++.++|||||+|.+.++|..|+. |||..++|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3445899999999999999999999999998 44 2232 67889999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 043634 91 RASKPN 96 (121)
Q Consensus 91 ~a~~~~ 96 (121)
++ .++
T Consensus 91 ~a-~~~ 95 (101)
T 1fj7_A 91 KP-KGR 95 (101)
T ss_dssp CC-SCC
T ss_pred Ec-CCC
Confidence 99 443
No 72
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=110.00 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=66.8
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCe--eCCeEEEEEe
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLR--FLGKVLSVER 91 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~--i~g~~l~v~~ 91 (121)
..+|+++|||+|||+.+++++|+.+|++||. ..++++. .+|+|||+|.+.++|..|+..|++.. +.|+.|.|.+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 4456899999999999999999999999999 5555553 47999999999999999999999875 7899999999
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
+
T Consensus 94 S 94 (100)
T 3r27_A 94 S 94 (100)
T ss_dssp C
T ss_pred c
Confidence 9
No 73
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=2.6e-19 Score=111.56 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=72.1
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|..|+..|||..++|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3344799999999999999999999999999 6777766 678899999999999999999999999999999999999
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
+.
T Consensus 111 a~ 112 (124)
T 2kt5_A 111 VA 112 (124)
T ss_dssp EC
T ss_pred eC
Confidence 93
No 74
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=4.3e-20 Score=108.35 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=65.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+.-|||+||++.+++++|+++|.+||+ .++++. .++|||||+|.+.++|..|++.||+..+.|+.|+|.+|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~---~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY---LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc---CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 678999999999999999999999999 444443 36899999999999999999999999999999999988
No 75
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=106.35 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=70.3
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
....++|||+|||+.+++++|+++|+.|+...++++. +|.++|||||+|.+.++|..|+. +||..++|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a- 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE- 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE-
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC-
Confidence 3448999999999999999999999999336777766 78889999999999999999999 9999999999999999
Q ss_pred CCC
Q 043634 94 KPN 96 (121)
Q Consensus 94 ~~~ 96 (121)
.++
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 443
No 76
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=9.7e-20 Score=106.82 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=68.6
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|.+|+. +++..++|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3455899999999999999999999999999 6666664 68889999999999999999995 58889999999998
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 77
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=2e-19 Score=116.12 Aligned_cols=78 Identities=28% Similarity=0.401 Sum_probs=71.6
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..+.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|..|+..|||..++|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 344799999999999999999999999999 6666665 688999999999999999999999999999999999999
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
++
T Consensus 147 a~ 148 (158)
T 2kn4_A 147 AR 148 (158)
T ss_dssp EC
T ss_pred CC
Confidence 94
No 78
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.6e-20 Score=110.82 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=72.4
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
....+.++|||+|||+.+++++|+++|.+||. ..++++. ++.++|||||+|.+.++|..|+.. ++..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34455899999999999999999999999999 6666665 678899999999999999999988 999999999999
Q ss_pred EecCCCCc
Q 043634 90 ERASKPNE 97 (121)
Q Consensus 90 ~~a~~~~~ 97 (121)
.++ .++.
T Consensus 90 ~~a-~~~~ 96 (105)
T 2dh8_A 90 KPC-TPRG 96 (105)
T ss_dssp CCS-CCSS
T ss_pred EEc-cCCC
Confidence 999 5443
No 79
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=111.14 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=67.9
Q ss_pred CCCCCCccEEEecCCCC-CCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcC--CeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPD-AIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG--LRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~-~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g--~~i~g~~l~ 88 (121)
.....+.++|||+|||+ .+++++|+.+|++||. ..+.++. .+|||||+|.+.++|..|+..||+ ..|.|+.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34455789999999999 9999999999999999 5566553 358999999999999999999986 459999999
Q ss_pred EEecC
Q 043634 89 VERAS 93 (121)
Q Consensus 89 v~~a~ 93 (121)
|.+++
T Consensus 86 V~~a~ 90 (102)
T 1x4d_A 86 VHLSQ 90 (102)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99994
No 80
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=112.00 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=68.8
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcC--CeeCCeEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG--LRFLGKVLSV 89 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g--~~i~g~~l~v 89 (121)
....++.++|||+|||+.+++++|+++|++||. ..++++.. +|||||+|.+.++|.+|+..|++ ..+.|+.|+|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 445556899999999999999999999999999 66776643 79999999999999999998874 6899999999
Q ss_pred EecC
Q 043634 90 ERAS 93 (121)
Q Consensus 90 ~~a~ 93 (121)
.+++
T Consensus 102 ~~a~ 105 (119)
T 2ad9_A 102 QFSN 105 (119)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9993
No 81
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=2.6e-20 Score=112.31 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=70.0
Q ss_pred CccEEEecCCCC------CCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCC-eE
Q 043634 18 NLVTLLIKHLPD------AIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG-KV 86 (121)
Q Consensus 18 ~~~~l~V~nlp~------~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g-~~ 86 (121)
..++|||+|||. .+++++|+++|++||. ..++++. +|.++|||||+|.+.++|.+|+..|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 378999999999 9999999999999999 6666665 68899999999999999999999999999999 99
Q ss_pred EEEEec
Q 043634 87 LSVERA 92 (121)
Q Consensus 87 l~v~~a 92 (121)
|+|.++
T Consensus 85 l~V~~a 90 (100)
T 3ns6_A 85 LFLYTM 90 (100)
T ss_dssp CEEEES
T ss_pred EEEEEC
Confidence 999998
No 82
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=7.8e-20 Score=118.45 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=68.7
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhC--C-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYG--A-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G--~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.++|||+|||+.+++++|+++|++|| . ..++++. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 57999999999999999999999999 7 5666654 7889999999999999999999999999999999999999
No 83
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=1.2e-19 Score=106.72 Aligned_cols=73 Identities=14% Similarity=0.282 Sum_probs=68.1
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|.+|+ .+||..++|+.|+|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 689999999999999999999999999 6666654 6788999999999999999999 99999999999999999
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=110.27 Aligned_cols=76 Identities=14% Similarity=0.312 Sum_probs=69.7
Q ss_pred CCccEEEecCCCCCC------CHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCe-EE
Q 043634 17 ENLVTLLIKHLPDAI------PQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGK-VL 87 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~------~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~-~l 87 (121)
...++|||+|||+.+ ++++|+.+|++||. ..+.++. +|.++|||||+|.+.++|..|+..|||..++|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 347999999999999 78999999999999 6666665 788899999999999999999999999999998 99
Q ss_pred EEEec
Q 043634 88 SVERA 92 (121)
Q Consensus 88 ~v~~a 92 (121)
+|.++
T Consensus 93 ~V~~a 97 (105)
T 2nlw_A 93 RVNLF 97 (105)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 99998
No 85
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-19 Score=108.52 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=67.4
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCC-----eEEEE
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG-----KVLSV 89 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g-----~~l~v 89 (121)
....++|||+|||+.+++++|+++|.+||. ..+.++.. |||||+|.+.++|..||..||+..|+| +.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 345899999999999999999999999999 45555433 899999999999999999999999999 99999
Q ss_pred EecCCCC
Q 043634 90 ERASKPN 96 (121)
Q Consensus 90 ~~a~~~~ 96 (121)
.++ .++
T Consensus 88 ~~a-~~~ 93 (108)
T 1x4c_A 88 KVD-GPR 93 (108)
T ss_dssp EES-SCC
T ss_pred EeC-CCC
Confidence 999 443
No 86
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-19 Score=106.73 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=69.0
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC--CeEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL--GKVLSV 89 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~--g~~l~v 89 (121)
.....+.++|||+|||+.+++++|+++|++||. ..+.++ .+ +|||||+|.+.++|..|+..||+..+. |+.|+|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~-~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-CC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 334455799999999999999999999999999 444444 22 789999999999999999999999999 999999
Q ss_pred EecCCCC
Q 043634 90 ERASKPN 96 (121)
Q Consensus 90 ~~a~~~~ 96 (121)
.++ .++
T Consensus 88 ~~a-~~~ 93 (97)
T 1why_A 88 DFA-KSG 93 (97)
T ss_dssp EEC-CCC
T ss_pred EEC-CCC
Confidence 999 443
No 87
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=3.4e-19 Score=107.67 Aligned_cols=75 Identities=20% Similarity=0.445 Sum_probs=67.1
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....+.++|||+|||+.+++++|+++|++||. ..+.++ ++||||+|.+.++|..|+..||+..|+|+.|+|.++
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 34456899999999999999999999999999 445543 579999999999999999999999999999999999
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
+
T Consensus 81 ~ 81 (103)
T 2dgu_A 81 K 81 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=1e-19 Score=111.90 Aligned_cols=77 Identities=25% Similarity=0.326 Sum_probs=71.2
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+.+.++|||+|||+.+++++|+.+|++||. ..+.++..+.++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 345799999999999999999999999999 66777667777999999999999999999999999999999999999
No 89
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=109.32 Aligned_cols=78 Identities=12% Similarity=0.180 Sum_probs=67.3
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCC--eeCCeEEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGL--RFLGKVLSV 89 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~--~i~g~~l~v 89 (121)
+....+.++|||+|||+.+++++|+++|++||. ..+.++. .+|||||+|.+.++|..|+..|++. .+.|+.|+|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 344566899999999999999999999999999 5555543 3799999999999999999988764 599999999
Q ss_pred EecC
Q 043634 90 ERAS 93 (121)
Q Consensus 90 ~~a~ 93 (121)
.+++
T Consensus 86 ~~a~ 89 (104)
T 1wex_A 86 NYST 89 (104)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9994
No 90
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-19 Score=107.18 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=71.5
Q ss_pred CCCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 043634 12 NKQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVL 87 (121)
Q Consensus 12 ~~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l 87 (121)
......+.++|||+|||+.+++++|+.+|.+||. ..++++. ++.++|||||+|.+.++|..|+. ++..++|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 3444556899999999999999999999999999 6666655 68889999999999999999997 4779999999
Q ss_pred EEEecCCCCc
Q 043634 88 SVERASKPNE 97 (121)
Q Consensus 88 ~v~~a~~~~~ 97 (121)
.|.++ .++.
T Consensus 86 ~v~~a-~~~~ 94 (103)
T 2cqg_A 86 DCKLP-NSKQ 94 (103)
T ss_dssp EEECC-CTTC
T ss_pred EEEec-CCCC
Confidence 99999 5443
No 91
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=113.35 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=69.9
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3445899999999999999999999999999 6666655 57889999999999999999999999999999999998
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 92
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.9e-19 Score=104.56 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=68.4
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....+.++|||+|||+.+++++|+++|++||. ..+.++ ++||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34455899999999999999999999999999 566655 459999999999999999999999999999999999
Q ss_pred CCCC
Q 043634 93 SKPN 96 (121)
Q Consensus 93 ~~~~ 96 (121)
.++
T Consensus 80 -~~~ 82 (92)
T 2dgt_A 80 -TSR 82 (92)
T ss_dssp -SCC
T ss_pred -cCC
Confidence 443
No 93
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-19 Score=109.93 Aligned_cols=73 Identities=27% Similarity=0.359 Sum_probs=68.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.++|||+|||+.+++++|+++|+.||. ..++++. ++.++|||||+|.+.++|..|+ .|||..|+|+.|+|.++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 589999999999999999999999999 6677765 5788999999999999999999 99999999999999998
No 94
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=5.6e-20 Score=116.45 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=71.9
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..|+|+.|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3344789999999999999999999999999 6777765 67889999999999999999999999999999999999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
+++
T Consensus 123 ~a~ 125 (135)
T 2lea_A 123 MAR 125 (135)
T ss_dssp ECC
T ss_pred ECC
Confidence 994
No 95
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=105.74 Aligned_cols=73 Identities=23% Similarity=0.425 Sum_probs=66.6
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..+.++|||+|||+.+++++|+++|++||. ..++++ ++||||+|.+.++|..|+..||+..++|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 455899999999999999999999999999 555554 6899999999999999999999999999999999993
No 96
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.1e-20 Score=111.72 Aligned_cols=75 Identities=28% Similarity=0.494 Sum_probs=70.2
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+.++|||+|||+.+++++|+.+|++||. ..++++. +|.++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3799999999999999999999999999 6777665 6788999999999999999999999999999999999999
No 97
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=3.8e-19 Score=106.64 Aligned_cols=75 Identities=25% Similarity=0.318 Sum_probs=65.8
Q ss_pred CCCCCCccEEEecCCCC-CCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 13 KQETENLVTLLIKHLPD-AIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~-~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
....++.++|||+|||+ .+++++|+++|++||. ..+++ .+|||||+|.+.++|..|+..|||..++|+.|+|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 33445589999999998 9999999999999999 44444 26899999999999999999999999999999999
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
++
T Consensus 91 ~a 92 (97)
T 2xnq_A 91 VS 92 (97)
T ss_dssp EC
T ss_pred ec
Confidence 99
No 98
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=105.00 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=67.5
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEe
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL-NGLRFLGKVLSVER 91 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l-~g~~i~g~~l~v~~ 91 (121)
+...+.++|||+|||+.+++++|+++|++||. ..++++. ++|||||+|.+.++|..|+..| +|..++|+.|+|.+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 33455899999999999999999999999999 5555553 4799999999999999999988 99999999999998
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
+
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 8
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.8e-19 Score=117.47 Aligned_cols=79 Identities=18% Similarity=0.347 Sum_probs=71.1
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||+.+++++|+.+|++||. ..+.++. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3444789999999999999999999999999 6666664 77889999999999999999999999999999999999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
+++
T Consensus 148 ~a~ 150 (165)
T 1rk8_A 148 WCF 150 (165)
T ss_dssp ESE
T ss_pred Eec
Confidence 994
No 100
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=114.39 Aligned_cols=78 Identities=29% Similarity=0.461 Sum_probs=70.3
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-cc--------EEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SS--------VRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV 86 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~--------~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~ 86 (121)
..+.++|||+|||+.+++++|+.+|++||. .. +++..+|.++|||||+|.+.++|..|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 455899999999999999999999999998 43 333447889999999999999999999999999999999
Q ss_pred EEEEecC
Q 043634 87 LSVERAS 93 (121)
Q Consensus 87 l~v~~a~ 93 (121)
|.|.+++
T Consensus 122 l~V~~a~ 128 (143)
T 3egn_A 122 MVVQFAR 128 (143)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9999993
No 101
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-19 Score=107.09 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=68.9
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....+.++|||+|||+.+++++|+++|++||. ..++++. .+|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 33455899999999999999999999999999 6666653 3799999999999999999999999999999999999
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
+
T Consensus 87 ~ 87 (99)
T 2cpj_A 87 C 87 (99)
T ss_dssp S
T ss_pred C
Confidence 3
No 102
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=7.3e-19 Score=107.40 Aligned_cols=74 Identities=27% Similarity=0.443 Sum_probs=67.2
Q ss_pred CccEEEecCCCCC-CCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 043634 18 NLVTLLIKHLPDA-IPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKP 95 (121)
Q Consensus 18 ~~~~l~V~nlp~~-~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 95 (121)
+.++|||+|||+. +++++|+++|++||. ..+.+ ++|||||+|.+.++|..|+..||+..++|+.|+|.+++.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3689999999999 999999999999999 55655 5799999999999999999999999999999999999534
Q ss_pred C
Q 043634 96 N 96 (121)
Q Consensus 96 ~ 96 (121)
+
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 103
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=4e-19 Score=114.71 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.++|||+|||+.+++++|+++|++||. ..+.++. ++.++|||||+|.+.++|..|+..||+..|+|+.|+|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45799999999999999999999999999 6666655 5788999999999999999999999999999999999999
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
+
T Consensus 117 ~ 117 (156)
T 1h2v_Z 117 A 117 (156)
T ss_dssp S
T ss_pred C
Confidence 4
No 104
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=2e-19 Score=108.30 Aligned_cols=73 Identities=18% Similarity=0.388 Sum_probs=67.0
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++|||+|||..+++++|+.+|++||. ..++++ .++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 34799999999999999999999999999 666665 45799999999999999999999999999999999998
No 105
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-18 Score=104.66 Aligned_cols=79 Identities=27% Similarity=0.428 Sum_probs=67.2
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhh--CCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHY--GASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~--G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
....+.++|||+|||+.+++++|+++|++| |. +..+. ..+|||||+|.+.++|..|+..|||..++|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~--v~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA--VERVK--KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTC--EEEEE--ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcc--eEEEE--EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 344558999999999999999999999999 76 33332 1268999999999999999999999999999999999
Q ss_pred cCCCCc
Q 043634 92 ASKPNE 97 (121)
Q Consensus 92 a~~~~~ 97 (121)
+ +++.
T Consensus 86 a-~~~~ 90 (99)
T 2cpd_A 86 A-KPVD 90 (99)
T ss_dssp C-CCCC
T ss_pred C-CCCC
Confidence 9 5443
No 106
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=108.00 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=69.2
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
...+.++|||+|||+.+++++|+.+|++||. ..++++.. +|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a- 96 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG- 96 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec-
Confidence 3445799999999999999999999999999 55555433 799999999999999999999999999999999999
Q ss_pred CCCc
Q 043634 94 KPNE 97 (121)
Q Consensus 94 ~~~~ 97 (121)
+++.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 4433
No 107
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=109.41 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=69.8
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.....++|||+|||+.+++++|+++|.+||...++++. +++++|||||+|.+.++|.+|+ .+|+..|+|+.|.|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 34558999999999999999999999999986566655 7889999999999999999999 57999999999999988
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
.
T Consensus 90 ~ 90 (102)
T 1wez_A 90 S 90 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 108
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=110.81 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=70.6
Q ss_pred CCCccEEEecCCCCCCCHHHHH---HHHhhhCC-ccEEEcc---C---CCcccEEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLS---RIFSHYGA-SSVRPCS---A---GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGK 85 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~---~~f~~~G~-~~~~~~~---~---~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~ 85 (121)
....++|||+|||+.+++++|+ ++|++||. ..+.++. + +.++|||||+|.+.++|.+|+..|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3447999999999999999999 99999999 6666665 2 24569999999999999999999999999999
Q ss_pred EEEEEecCCCCc
Q 043634 86 VLSVERASKPNE 97 (121)
Q Consensus 86 ~l~v~~a~~~~~ 97 (121)
.|+|.++ .++.
T Consensus 92 ~l~V~~a-~~k~ 102 (111)
T 2cpi_A 92 TLKASLG-TTKY 102 (111)
T ss_dssp EEEEESC-CCCS
T ss_pred EEEEEec-cccc
Confidence 9999999 5443
No 109
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=111.06 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=70.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
.++|||+|||+.+++++|+.+|.+||. ..++++. ++.++|||||+|.+.++|..|+.. ++..|+|+.|+|.++ .
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a-~ 104 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA-V 104 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC-S
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC-C
Confidence 699999999999999999999999999 6777765 578899999999999999999987 999999999999999 5
Q ss_pred CCcc
Q 043634 95 PNEE 98 (121)
Q Consensus 95 ~~~~ 98 (121)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 4433
No 110
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=110.20 Aligned_cols=78 Identities=27% Similarity=0.443 Sum_probs=68.6
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccE---EEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSV---RPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~---~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..+.++|||+|||+.+++++|+++|.+||. ..+ ..+.++.++|||||+|.+.++|..|+..|||..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345799999999999999999999999998 322 1112788899999999999999999999999999999999999
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
++
T Consensus 102 a~ 103 (115)
T 2cpx_A 102 GK 103 (115)
T ss_dssp CC
T ss_pred cc
Confidence 93
No 111
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=109.40 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=68.9
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++|||+|||+.+++++|+.+|++||. ..++++. .|.++|||||+|.+.++|..|+. +++..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 44799999999999999999999999999 6677665 57889999999999999999998 8999999999999988
No 112
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=108.00 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=69.4
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-cc-EEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SS-VRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~-~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
+.....++|||+|||+.+++++|+++|.+||. .. ++++. +|.++|||||+|.+.++|..|+.. ++..++|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 33455899999999999999999999999998 43 55554 788899999999999999999987 999999999999
Q ss_pred Eec
Q 043634 90 ERA 92 (121)
Q Consensus 90 ~~a 92 (121)
.++
T Consensus 89 ~~~ 91 (104)
T 1wg5_A 89 FKS 91 (104)
T ss_dssp EEE
T ss_pred EEC
Confidence 988
No 113
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=8.6e-19 Score=103.45 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=66.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..+.++|||+|||+.+++++|+.+|++||. ..++++ ++||||+|.+.++|..|+..|||..++|+.|+|.+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 445899999999999999999999999999 445554 4599999999999999999999999999999999993
No 114
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=9.7e-20 Score=104.05 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=64.8
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 21 TLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 21 ~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+|||+|||+.+++++|+++|++||. ..+.++. ++.++|||||+|.+.++|.+|+. +++..++|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999 6666655 67889999999999999999997 9999999999999875
No 115
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=6.3e-20 Score=114.24 Aligned_cols=74 Identities=14% Similarity=0.276 Sum_probs=68.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+ .|||..|+|+.|+|.+++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 589999999999999999999999999 6666664 6888999999999999999999 899999999999999994
No 116
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=105.32 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=66.7
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcC-CeeCCeEEEEEecCC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG-LRFLGKVLSVERASK 94 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g-~~i~g~~l~v~~a~~ 94 (121)
.+.++|||+|||+.+++++|+++|++||. .....+ .++|||||+|.+.++|..|+..||| ..++|+.|+|.++ .
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a-~ 81 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS-V 81 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC-C
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc-c
Confidence 45799999999999999999999999998 443232 2468999999999999999999999 9999999999999 4
Q ss_pred CC
Q 043634 95 PN 96 (121)
Q Consensus 95 ~~ 96 (121)
++
T Consensus 82 ~~ 83 (93)
T 2cqh_A 82 SK 83 (93)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=5.1e-20 Score=106.83 Aligned_cols=71 Identities=15% Similarity=0.368 Sum_probs=64.4
Q ss_pred ccEEEecCCCCCC------CHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCe-EEEE
Q 043634 19 LVTLLIKHLPDAI------PQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGK-VLSV 89 (121)
Q Consensus 19 ~~~l~V~nlp~~~------~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~-~l~v 89 (121)
+++|||+|||+.+ ++++|+++|++||. ..+.++. +|.++|||||+|.+.++|..|+..|||..++|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 77999999999999 6666665 788899999999999999999999999999999 8876
No 118
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=5.6e-19 Score=109.40 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=69.5
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC----ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~----~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
.....++|||+|||+.+++++|+++|+.||. ..++++. .|+++|||||+|.+.++|.+|+. +|+..|+|+.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 3445899999999999999999999999987 4566665 68889999999999999999998 999999999999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|.++
T Consensus 92 V~~a 95 (118)
T 2db1_A 92 VFKS 95 (118)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9998
No 119
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=107.62 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=70.8
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC--ccEEEc-c---CCCcccEEEEEeCCHHHHHHHHHHhc--CCeeCCeEE
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA--SSVRPC-S---AGRLRNCVFVDFGNEPLASQAQMQLN--GLRFLGKVL 87 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~--~~~~~~-~---~~~~~g~afv~f~~~~~a~~ai~~l~--g~~i~g~~l 87 (121)
..+.++|||+|||+.+++++|+.+|.+||. ..+.++ . ++.++|||||+|.+.++|..|+..|+ +..++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345899999999999999999999999986 456665 2 56889999999999999999999996 589999999
Q ss_pred EEEecCCCCcc
Q 043634 88 SVERASKPNEE 98 (121)
Q Consensus 88 ~v~~a~~~~~~ 98 (121)
+|.++ .++..
T Consensus 85 ~V~~a-~~~~~ 94 (109)
T 2dis_A 85 AVDWA-EPEID 94 (109)
T ss_dssp EEEES-CSSCS
T ss_pred EEEEc-CCCCC
Confidence 99999 54433
No 120
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-19 Score=108.27 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=69.1
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCCc--cEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGAS--SVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~--~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..+.++|||+|||+.+++++|+++|..||.. .++++. +|.++|||||+|.+.++|..|+.. |+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3457999999999999999999999999984 377766 788899999999999999999976 99999999999999
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
+
T Consensus 91 a 91 (114)
T 2cpy_A 91 V 91 (114)
T ss_dssp E
T ss_pred C
Confidence 9
No 121
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-20 Score=108.10 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=68.9
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.++|||+|||+.+++++|+++|++||. ..++++. ++.++|||||+|.+.++|..|+..|||..++|+.+++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45899999999999999999999999999 6666654 6788999999999999999999999999999999987765
No 122
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.8e-19 Score=107.33 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=70.7
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCee--------C
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRF--------L 83 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i--------~ 83 (121)
...+.++|||+|||+.+++++|+.+|.+||. ..++++. ++.++|||||+|.+.++|..|+..|||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3345799999999999999999999999999 6666665 678899999999999999999999999999 5
Q ss_pred CeEEEEEecCCC
Q 043634 84 GKVLSVERASKP 95 (121)
Q Consensus 84 g~~l~v~~a~~~ 95 (121)
++.|.|.++ .|
T Consensus 101 ~~~l~v~~a-~p 111 (114)
T 1x5o_A 101 TEPLLCKFS-GP 111 (114)
T ss_dssp SSCBEEEEC-CC
T ss_pred CCceeEEcc-CC
Confidence 788999999 44
No 123
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=111.73 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-cc-EEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SS-VRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~-~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++|||+|||+.+++++|+++|..||. .. +.+.. +|.++|||||+|.+.++|..||. +|+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 34799999999999999999999999999 44 33332 78899999999999999999998 9999999999999999
No 124
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=103.52 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=66.6
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
++|||+|||+.+++++|+++|++||. ..+.++. ++.++|||||+|.+.++|..|+..++ ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999 6777765 57889999999999999999999999 9999999999987
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=106.44 Aligned_cols=72 Identities=25% Similarity=0.350 Sum_probs=66.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
++|||+|||+.+++++|+++|++||. ..+.++.. ++|||||+|.+.++|..|+..|||..++|+.|+|.+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 58999999999999999999999999 66666544 68999999999999999999999999999999999994
No 126
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=108.90 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=66.7
Q ss_pred CCCCccEEEecCCCCC-CCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcC--CeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDA-IPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNG--LRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~-~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g--~~i~g~~l~v~ 90 (121)
...+.++|||+|||+. +++++|+.+|++||. ..++++. .+|||||+|.+.++|..|+..|++ ..|.|+.|+|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4556899999999998 999999999999999 6666653 479999999999999999998864 56999999999
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
++
T Consensus 98 ~a 99 (112)
T 1x4f_A 98 LS 99 (112)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 127
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=106.85 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=67.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.++|||+|||+.+++++|+++|+.|+...++++. .|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 7899999999999999999999999446777775 6788999999999999999999 79999999999999888
No 128
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=9e-20 Score=107.58 Aligned_cols=72 Identities=21% Similarity=0.411 Sum_probs=67.8
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.+ |..|+..|||..++|+.|+|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 68999999999999999999999999 7777776 5888999999999999 99999999999999999999999
No 129
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=1.4e-18 Score=111.46 Aligned_cols=77 Identities=23% Similarity=0.290 Sum_probs=68.9
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....+.++|||+|||+.+++++|+.+|++||. ..++++.. ++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34455899999999999999999999999999 55555543 5799999999999999999999999999999999999
No 130
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.1e-19 Score=107.37 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=65.9
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..++|||+|||+.+++++|+.+|++||. ..+.++ ..+|||||+|.+.++|..|+..|||..++|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3789999999999999999999999999 444443 357899999999999999999999999999999999994
No 131
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.5e-19 Score=105.25 Aligned_cols=73 Identities=27% Similarity=0.318 Sum_probs=65.7
Q ss_pred CCCccEEEecCCCC-CCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 16 TENLVTLLIKHLPD-AIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 16 ~~~~~~l~V~nlp~-~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..+.++|||+|||+ .+++++|+.+|++||. ..+++ .+|||||+|.+.++|..|+..|||..+.|+.|+|.+++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE-----ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 45589999999999 9999999999999999 55555 26899999999999999999999999999999999993
No 132
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-18 Score=102.04 Aligned_cols=75 Identities=27% Similarity=0.330 Sum_probs=65.9
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
..+.++|||+|| .+++++|+++|.+||. ..+.+ +.++|||||+|.+.++|..|+..|||..++|+.|+|.++ .
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i---~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a-~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM---DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA-R 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE---ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC-S
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe---cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC-C
Confidence 345899999996 8999999999999999 44444 456799999999999999999999999999999999999 4
Q ss_pred CC
Q 043634 95 PN 96 (121)
Q Consensus 95 ~~ 96 (121)
++
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 133
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=102.12 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=66.8
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEE-EccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVR-PCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~-~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
...++|||+|||+.+++++|+.+|++||. ..++ ++. ....+.|||+|.+.++|..|+..|||..++|+.|+|.++ .
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~-~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a-~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT-DSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI-P 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC-SSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC-C
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec-CCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc-C
Confidence 34799999999999999999999999999 5553 443 222345999999999999999999999999999999999 4
Q ss_pred CC
Q 043634 95 PN 96 (121)
Q Consensus 95 ~~ 96 (121)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 134
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=1.4e-18 Score=110.19 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC----ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~----~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
....++|||+|||+.+++++|+++|++||. ..++++. .|+++|||||+|.+.++|.+|+. +|+..|+|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 344799999999999999999999999996 3566665 68889999999999999999998 9999999999999
Q ss_pred Eec
Q 043634 90 ERA 92 (121)
Q Consensus 90 ~~a 92 (121)
.++
T Consensus 120 ~~a 122 (136)
T 2hgl_A 120 FKS 122 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 988
No 135
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=6.1e-19 Score=107.40 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=69.1
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC----ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA----SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~----~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
+....++|||+|||+.+++++|+++|..||. ..++++. .|.++|||||+|.+.++|..|+. +|+..++|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3455899999999999999999999999776 4577765 67889999999999999999998 999999999999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|.++
T Consensus 86 V~~a 89 (107)
T 2lmi_A 86 VYEI 89 (107)
T ss_dssp CEEC
T ss_pred EEEC
Confidence 9988
No 136
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=3.9e-18 Score=112.46 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=71.3
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..+.++|||+|||+.+++++|+++|++||. ..+.++. ++.++|||||+|.+.++|..|+..|||..|+|+.|+|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 344799999999999999999999999999 6777766 6788999999999999999999999999999999999999
No 137
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=2.8e-18 Score=115.71 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=70.3
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..|.++|||+|||+.+++++|+++|++||. .+++++. ++.++|||||+|.+.++|..|+..+|+..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 345789999999999999999999999999 6777765 788999999999999999999999999999999999998
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
+.
T Consensus 92 ~~ 93 (213)
T 4f02_A 92 SQ 93 (213)
T ss_dssp CC
T ss_pred cc
Confidence 83
No 138
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=7e-19 Score=120.29 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=68.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhC--C-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYG--A-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G--~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.++|||+|||+.+++++|+++|++|| . ..++++. ++.++|||||+|.+.++|.+||..||+..|+|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 57899999999999999999999999 7 5666665 7889999999999999999999999999999999999998
No 139
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=3e-18 Score=100.82 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++|||+|||+.+++++|+++|++| . ..+++. .++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 347899999999999999999999999 7 666663 66899999999999999999999999999999999998
No 140
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=6.6e-19 Score=100.48 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=64.0
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 21 TLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 21 ~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+|||+|||+.+++++|+++|++||. ..+.++. ++.++|||||+|.+.++|..|+. +++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999 6666654 57889999999999999999997 4889999999999875
No 141
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.3e-18 Score=100.47 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=63.5
Q ss_pred CCCccE-EEecCCCCCCCHHH----HHHHHhhhC-CccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 16 TENLVT-LLIKHLPDAIPQDT----LSRIFSHYG-ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 16 ~~~~~~-l~V~nlp~~~~~~~----L~~~f~~~G-~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
.+|..+ |||+|||+.+++++ |+++|++|| . |..+ ++ |+|||.|.+.++|.+|++.|||..+.|+.|+|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~--Vl~V-tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGK--VLSI-TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCC--EEEC-CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCe--eEEE-ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 344554 99999999999987 668999995 7 4444 44 99999999999999999999999999999999
Q ss_pred EecCCCCc
Q 043634 90 ERASKPNE 97 (121)
Q Consensus 90 ~~a~~~~~ 97 (121)
.+| +.++
T Consensus 79 ~~A-~~~s 85 (96)
T 2diu_A 79 SFT-PKNR 85 (96)
T ss_dssp ESS-CCSC
T ss_pred Eec-CCCc
Confidence 999 4443
No 142
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=7.1e-19 Score=110.20 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=67.9
Q ss_pred CCCCCccEEEecCCCCCCCHHHHHHHHhhhCCc--cEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 14 QETENLVTLLIKHLPDAIPQDTLSRIFSHYGAS--SVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 14 ~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~--~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
......++|||+|||+.+++++|+++|++|+.. .++++. .|+++|||||+|.+.++|.+|+.. ++..|+|+.|.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 334457899999999999999999999999554 666665 678899999999999999999974 779999999999
Q ss_pred Eec
Q 043634 90 ERA 92 (121)
Q Consensus 90 ~~a 92 (121)
..+
T Consensus 116 ~~a 118 (126)
T 2hgm_A 116 FKS 118 (126)
T ss_dssp EEE
T ss_pred EEC
Confidence 887
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=104.01 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=65.3
Q ss_pred CCCCccEEEe--cCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCee-----CCeE
Q 043634 15 ETENLVTLLI--KHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRF-----LGKV 86 (121)
Q Consensus 15 ~~~~~~~l~V--~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i-----~g~~ 86 (121)
...|..+||| |||++.+++++|+++|++||. ..+.++ . .+|||||+|.+.++|.+|+..|||..+ .|+.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-P--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-T--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-C--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3455788999 779999999999999999999 444433 3 479999999999999999999999998 6889
Q ss_pred EEEEec
Q 043634 87 LSVERA 92 (121)
Q Consensus 87 l~v~~a 92 (121)
|.|.++
T Consensus 98 l~v~~a 103 (114)
T 2cq2_A 98 LYLNFV 103 (114)
T ss_dssp CEEEEE
T ss_pred EEEEec
Confidence 999999
No 144
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=7.9e-18 Score=109.43 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=66.3
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG--KVLSVERAS 93 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g--~~l~v~~a~ 93 (121)
.....|||+||++.+++++|+++|++||. ..+.+. .+..+|||||+|.+.++|..|+..|||..|.| +.|+|++++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~-~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEE-ESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEE-eCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 33678999999999999999999999999 555543 33457899999999999999999999999965 999999994
No 145
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.4e-17 Score=107.23 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=71.3
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...+.++|||+|||..+++++|+++|++||. ..+.++. +|.++|+|||+|.+.++|.+|+..|||..++|+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 3445899999999999999999999999999 6666654 68889999999999999999999999999999999999
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
++
T Consensus 163 ~a 164 (166)
T 3md3_A 163 WA 164 (166)
T ss_dssp ES
T ss_pred ec
Confidence 98
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=1e-17 Score=108.21 Aligned_cols=76 Identities=28% Similarity=0.386 Sum_probs=70.0
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
+.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|..|+..|+|..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4789999999999999999999999999 5666654 67889999999999999999999999999999999999993
No 147
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.3e-17 Score=107.42 Aligned_cols=75 Identities=27% Similarity=0.416 Sum_probs=69.5
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
.++|||+|||+.+++++|+++|+.||. ..++++. +|.++|||||+|.+.++|..|+..|+|..+.|+.|+|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 689999999999999999999999999 6666655 77888999999999999999999999999999999999993
No 148
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6e-20 Score=113.24 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=71.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-cc--------EEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeC
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SS--------VRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFL 83 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~--------~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~ 83 (121)
..+.++|||+|||+.+++++|+++|++||. .. ++++. ++.++|||||+|.+.++|..|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345899999999999999999999999999 44 55554 5788999999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 043634 84 GKVLSVERASKPN 96 (121)
Q Consensus 84 g~~l~v~~a~~~~ 96 (121)
|+.|+|.++ .++
T Consensus 84 g~~l~V~~a-~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFA-TRR 95 (116)
Confidence 999999999 443
No 149
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=7e-18 Score=98.67 Aligned_cols=72 Identities=22% Similarity=0.433 Sum_probs=62.8
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhh----C-------CccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHY----G-------ASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGK 85 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~----G-------~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~ 85 (121)
.+.++|||+|||+.+++++|+++|++| | . +..+.....+|||||+|.+.++|..|+ .|||..++|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~--v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP--VLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCS--EEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCc--ceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 458999999999999999999999999 7 5 433332344799999999999999999 9999999999
Q ss_pred EEEEEe
Q 043634 86 VLSVER 91 (121)
Q Consensus 86 ~l~v~~ 91 (121)
.|+|++
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999874
No 150
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=2.2e-18 Score=103.86 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=67.6
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.++|||+|||+.+++++|+.+|++||. ..++++. +|.++|||||+|.+.++|..|+. ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34799999999999999999999999999 6666665 77889999999999999999997 999999999999988
No 151
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=1.6e-17 Score=104.34 Aligned_cols=77 Identities=16% Similarity=0.367 Sum_probs=66.6
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccE-EEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNC-VFVDFGNEPLASQAQMQLNGLRFLG--KVLSVE 90 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~-afv~f~~~~~a~~ai~~l~g~~i~g--~~l~v~ 90 (121)
.+.+...|||+||++.+++++|+++|++||. .++++.. +.+|+ |||+|.+.++|..|+..|||..|.| +.|+|+
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3445688899999999999999999999999 5565543 23577 9999999999999999999999988 899999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
+++
T Consensus 102 ~ak 104 (130)
T 3zzy_A 102 FSK 104 (130)
T ss_dssp ECS
T ss_pred ecC
Confidence 994
No 152
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=6.6e-18 Score=113.88 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=70.1
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKPN 96 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~~ 96 (121)
.++|||+|||+.+++++|+++|++||. ..++++. .+.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++ .++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a-~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF-KSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-CCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc-CCC
Confidence 578999999999999999999999999 6676665 5667899999999999999999999999999999999999 543
No 153
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=1.1e-18 Score=111.12 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=68.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....++|||+|||+.+++++|+++|++||...++++. .++++|||||+|.+.++|..|| .+|+..|+|+.|.|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3447899999999999999999999999976666665 6788999999999999999999 78999999999999988
No 154
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=1.6e-17 Score=122.78 Aligned_cols=77 Identities=19% Similarity=0.368 Sum_probs=70.9
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.++|||+|||+.+++++|..+|++||. ..|.++. ++.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999 6666664 7888999999999999999999999999999999999999
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
.
T Consensus 180 ~ 180 (437)
T 3pgw_S 180 R 180 (437)
T ss_pred C
Confidence 3
No 155
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=3.9e-17 Score=101.95 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=63.9
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccE-EEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNC-VFVDFGNEPLASQAQMQLNGLRFLG--KVLSVERASK 94 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~-afv~f~~~~~a~~ai~~l~g~~i~g--~~l~v~~a~~ 94 (121)
...|||+||++.+++++|+.+|++||. ..+++... .|| |||+|.+.++|..|+..|||..|.| +.|+|.++ +
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A-k 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA-R 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC-S
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe-c
Confidence 455789999999999999999999999 55655432 386 9999999999999999999999987 68999999 4
Q ss_pred CC
Q 043634 95 PN 96 (121)
Q Consensus 95 ~~ 96 (121)
++
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=105.39 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=67.4
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-----ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-----SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-----~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
...++|||+|||+.+++++|+++|++||. ..++++. +|+++|||||+|.+.++|..|+.. |+..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 44789999999999999999999999986 2566665 788999999999999999999976 999999999999
Q ss_pred Eec
Q 043634 90 ERA 92 (121)
Q Consensus 90 ~~a 92 (121)
..+
T Consensus 100 ~~a 102 (123)
T 2dha_A 100 FRS 102 (123)
T ss_dssp EEE
T ss_pred EEC
Confidence 887
No 157
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=2.1e-17 Score=97.59 Aligned_cols=75 Identities=20% Similarity=0.398 Sum_probs=58.9
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCe--eCCeEEEEEe
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLR--FLGKVLSVER 91 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~--i~g~~l~v~~ 91 (121)
...+.++|||+|||+.+++++|+++|++||. ..++++. .++|||||+|.+.++|. .+++.. +.|+.|.|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--PFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--SCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--CCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEE
Confidence 3455899999999999999999999999999 5555553 47899999999999887 356655 4599999999
Q ss_pred cCCCC
Q 043634 92 ASKPN 96 (121)
Q Consensus 92 a~~~~ 96 (121)
+ .++
T Consensus 81 a-~~k 84 (89)
T 3d2w_A 81 A-EPK 84 (89)
T ss_dssp C-C--
T ss_pred c-CCC
Confidence 9 554
No 158
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=2.2e-17 Score=111.05 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=67.5
Q ss_pred CccEEEecCCC-CCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLP-DAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp-~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
++++|||+||| +.+++++|+++|++||. .+++++.. .+|||||+|.+.++|..|+..|||..+.|+.|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 47899999999 89999999999999999 66666643 47999999999999999999999999999999999994
No 159
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.74 E-value=2.4e-17 Score=107.40 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=70.1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKP 95 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 95 (121)
.+.++|||+|||+.+++++|+++|++||. ++.+. ++.++|||||+|.+.++|.+|+..|||..++|+.|+|.++ .+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~--v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a-~~ 173 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALE--IRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT-GE 173 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSE--EEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC-SS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCe--EEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec-CC
Confidence 34799999999999999999999999998 55444 7888999999999999999999999999999999999999 54
Q ss_pred C
Q 043634 96 N 96 (121)
Q Consensus 96 ~ 96 (121)
+
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 3
No 160
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=2.5e-17 Score=114.78 Aligned_cols=79 Identities=28% Similarity=0.423 Sum_probs=72.4
Q ss_pred CCCCccEEEecCCCCCCCHHHHH----HHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLS----RIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~----~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
+..+.++|||+|||+.+++++|+ ++|++||. ..++++.++.++|||||+|.+.++|..|+..|||..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 44568999999999999999966 89999999 66777778889999999999999999999999999999999999
Q ss_pred EecC
Q 043634 90 ERAS 93 (121)
Q Consensus 90 ~~a~ 93 (121)
.+++
T Consensus 85 ~~a~ 88 (282)
T 3pgw_A 85 QYAK 88 (282)
T ss_pred EEec
Confidence 9993
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=3.3e-17 Score=108.48 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=71.6
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.+.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45799999999999999999999999999 5666654 6778999999999999999999999999999999999999
Q ss_pred CCCC
Q 043634 93 SKPN 96 (121)
Q Consensus 93 ~~~~ 96 (121)
.++
T Consensus 192 -~~~ 194 (198)
T 2yh0_A 192 -SVG 194 (198)
T ss_dssp -CCC
T ss_pred -CCC
Confidence 544
No 162
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=97.38 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=62.5
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++|||+|||+.+++++|+.+|++||. ..+ +......+ ||||+|.+.++|..|+. |||..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 34689999999999999999999999999 444 22221122 99999999999999999 9999999999999988
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=2.4e-17 Score=109.00 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCCCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
+....+.++|||+|||+.+++++|+++|+.||. ..+.++. +|.++|||||+|.+.++|..|+.. ++..++|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 334456899999999999999999999999999 6666665 678899999999999999999965 89999999999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|.++
T Consensus 86 v~~~ 89 (196)
T 1l3k_A 86 PKRA 89 (196)
T ss_dssp EEEC
T ss_pred eecc
Confidence 9998
No 164
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=2.9e-17 Score=106.56 Aligned_cols=76 Identities=24% Similarity=0.419 Sum_probs=69.6
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...++|||+|||+.+++++|+++|++||. ..++++. +|.++|+|||+|.+.++|.+|+..|||..++|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 33799999999999999999999999999 5666554 6788999999999999999999999999999999999987
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=1.1e-17 Score=103.03 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=62.2
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE-----EEEE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV-----LSVE 90 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~-----l~v~ 90 (121)
...++|||+|||+.+++++|+++|.+||. ..+.++.. |||||+|.+.++|..||..|||..|+|+. |+|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 34799999999999999999999999999 45555433 89999999999999999999999999988 7777
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
.+
T Consensus 90 ~~ 91 (115)
T 3beg_B 90 VD 91 (115)
T ss_dssp EC
T ss_pred cC
Confidence 76
No 166
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.8e-17 Score=105.09 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=67.5
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
++|||+|||+.+++++|+++|++||. ..++++. .+.++|||||+|.+.++|..|+..++|..+.|+.|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 58999999999999999999999999 6666665 57788999999999999999999999999999999999993
No 167
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=6.3e-17 Score=100.63 Aligned_cols=72 Identities=28% Similarity=0.315 Sum_probs=65.2
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..+.++|||+|+ .+++++|+.+|++||. ..+.+. .++|||||+|.+.++|..|+..|||..++|+.|+|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 345899999996 6999999999999999 666664 56799999999999999999999999999999999999
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=6e-17 Score=108.50 Aligned_cols=76 Identities=16% Similarity=0.362 Sum_probs=69.9
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
+.++|||+|||..+++++|+++|++||. ..++++. +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 3589999999999999999999999999 6666665 67889999999999999999999999999999999999993
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=99.99 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=62.8
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc---C---CCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS---A---GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~---~---~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...++|||+|||+.+++++|+++|++||...+.++. + |.++|||||+|.+.++|..|+..|+ .++|+.+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 447999999999999999999999999993355555 3 6889999999999999999999885 4778777776
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=3.3e-17 Score=105.82 Aligned_cols=76 Identities=14% Similarity=0.306 Sum_probs=69.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASK 94 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~ 94 (121)
.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|.+|+. ++|..++|+.|.|.++ .
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a-~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA-E 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC-C
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec-C
Confidence 679999999999999999999999999 6777765 68889999999999999999997 8999999999999999 5
Q ss_pred CC
Q 043634 95 PN 96 (121)
Q Consensus 95 ~~ 96 (121)
|+
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.7e-17 Score=95.98 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=61.3
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERASKP 95 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~~~ 95 (121)
.+.++|||+|||+.+++++|+++|++||. ..++++. .++|||||+|.+.++|++++.. ...+.|+.|.|.++ .+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a-~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK--PFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA-EP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS--SCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC-CC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec--CCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec-CC
Confidence 45799999999999999999999999999 5566553 3689999999999998754321 24558999999999 54
Q ss_pred Cc
Q 043634 96 NE 97 (121)
Q Consensus 96 ~~ 97 (121)
+.
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 172
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4e-17 Score=101.89 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=64.7
Q ss_pred cEEEecCC----CCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCC----HHH----HHHHHH--HhcCCe
Q 043634 20 VTLLIKHL----PDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGN----EPL----ASQAQM--QLNGLR 81 (121)
Q Consensus 20 ~~l~V~nl----p~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~----~~~----a~~ai~--~l~g~~ 81 (121)
++|||+|| |+.+++.+|+.+|++||. .++.++. +|.++|||||+|.+ ..+ |..|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 999999999999999999 7777666 89999999999996 322 788888 789999
Q ss_pred eCCeEEEEEec
Q 043634 82 FLGKVLSVERA 92 (121)
Q Consensus 82 i~g~~l~v~~a 92 (121)
|+|+.|+|.+.
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999988
No 173
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1.4e-16 Score=105.31 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=68.2
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
+.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a- 180 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA- 180 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC-
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec-
Confidence 4689999999999999999999999999 6666664 678899999999999999999976 899999999999999
Q ss_pred CCCc
Q 043634 94 KPNE 97 (121)
Q Consensus 94 ~~~~ 97 (121)
.++.
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 5443
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=1.4e-16 Score=103.37 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=68.0
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeC---CeEEEEEe
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFL---GKVLSVER 91 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~---g~~l~v~~ 91 (121)
+.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|.+|+..|||..+. +++|.|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 4789999999999999999999999999 6666665 6778999999999999999999999998776 49999998
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
|
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 7
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1.3e-16 Score=106.84 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=67.3
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.++|||+|||+.+++++|+++|+.||. ..++++. ++.++|||||+|.+.++|..|+..|++..++|+.|.|.++
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 689999999999999999999999999 6677765 6778999999999999999999999999999999999887
No 176
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=9.2e-17 Score=104.60 Aligned_cols=78 Identities=24% Similarity=0.332 Sum_probs=68.0
Q ss_pred CCCCccEEEecCCCCCCCHHHHHHHHhhhCC-cc--EEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 15 ETENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SS--VRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~--~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
+..+.++|||+|||+.+++++|+++|..||. .. +....++.++|||||+|.+.++|..|+ .|||..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 4455899999999999999999999999987 33 222237888999999999999999999 5999999999999999
Q ss_pred cC
Q 043634 92 AS 93 (121)
Q Consensus 92 a~ 93 (121)
+.
T Consensus 88 ~~ 89 (175)
T 1fje_B 88 PK 89 (175)
T ss_dssp CC
T ss_pred CC
Confidence 93
No 177
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=1.9e-16 Score=102.19 Aligned_cols=76 Identities=32% Similarity=0.435 Sum_probs=68.6
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG--KVLSVE 90 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g--~~l~v~ 90 (121)
.+.++|||+|||..+++++|+++|++||. ..+.++. ++.++|+|||+|.+.++|..|+..|||..+.| +.|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 44789999999999999999999999999 5666555 67788999999999999999999999999988 999998
Q ss_pred ec
Q 043634 91 RA 92 (121)
Q Consensus 91 ~a 92 (121)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=2e-16 Score=107.64 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=68.7
Q ss_pred CCCCccEEEecCCCC-CCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 15 ETENLVTLLIKHLPD-AIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~-~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
...+.++|||+|||+ .+++++|+++|++||. ..++++... +|||||+|.+.++|..|+..|+|..+.|+.|.|.++
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 345589999999999 9999999999999999 556665432 789999999999999999999999999999999999
Q ss_pred C
Q 043634 93 S 93 (121)
Q Consensus 93 ~ 93 (121)
.
T Consensus 108 ~ 108 (229)
T 2adc_A 108 K 108 (229)
T ss_dssp S
T ss_pred c
Confidence 4
No 179
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=2.7e-16 Score=101.15 Aligned_cols=75 Identities=29% Similarity=0.428 Sum_probs=67.0
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE--EEEEe
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV--LSVER 91 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~--l~v~~ 91 (121)
+.++|||+|||..+++++|+++|++||. ..++++. +|.++|||||+|.+.++|.+|+..|||..+.|+. |+|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4789999999999999999999999999 5666654 6778999999999999999999999999999975 77776
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=2.9e-16 Score=104.77 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=66.1
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
.++|||+|||+.+++++|+.+|++||. ..++++. ++.++|||||+|.+.++|..|+..++ ..++|+.|.|.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 589999999999999999999999999 6666665 67889999999999999999997655 5999999999988
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=1.2e-15 Score=106.29 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=66.7
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEecC
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL-GKVLSVERAS 93 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~-g~~l~v~~a~ 93 (121)
.+.++|||+|||..+++++|+++|++||. ..++++.. .+|||||+|.+.++|..|+..|||..+. |+.|+|.+++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG--RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC--CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 34789999999999999999999999999 55655532 2589999999999999999999999999 9999999983
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=5.9e-16 Score=107.92 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=72.6
Q ss_pred CCCccEEEecCCCCCC-CHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 16 TENLVTLLIKHLPDAI-PQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~-~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..+.++|||+|||+.+ ++++|+++|+.||. ..++++. +|.++|+|||+|.+.++|..|+..|||..++|+.|+|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3457999999999995 99999999999999 6777665 788899999999999999999999999999999999999
Q ss_pred cCCCCc
Q 043634 92 ASKPNE 97 (121)
Q Consensus 92 a~~~~~ 97 (121)
+ .++.
T Consensus 261 a-~~~~ 265 (284)
T 3smz_A 261 C-APGP 265 (284)
T ss_dssp C-CSSS
T ss_pred e-cCCC
Confidence 9 5443
No 183
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.7e-15 Score=91.82 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=67.4
Q ss_pred CCCCccEEEecCCCCCCC-----------HHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCee
Q 043634 15 ETENLVTLLIKHLPDAIP-----------QDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRF 82 (121)
Q Consensus 15 ~~~~~~~l~V~nlp~~~~-----------~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i 82 (121)
.+.+.++|+|.||..... +++|+.+|++||. ..+.+ ....++|||||+|.+.++|..|+..|||..+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 445689999999954432 5799999999999 66644 3334789999999999999999999999999
Q ss_pred CCeEEEEEecCCCCc
Q 043634 83 LGKVLSVERASKPNE 97 (121)
Q Consensus 83 ~g~~l~v~~a~~~~~ 97 (121)
+|+.|+|.++ .++.
T Consensus 90 ~gr~l~v~~a-~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAW-DGTT 103 (112)
T ss_dssp TTEECEEEEC-CSCC
T ss_pred CCcEEEEEEe-CCCC
Confidence 9999999999 5443
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=1.9e-16 Score=108.76 Aligned_cols=74 Identities=24% Similarity=0.347 Sum_probs=66.9
Q ss_pred CCccEEEecCCCCCC---------CHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCee----
Q 043634 17 ENLVTLLIKHLPDAI---------PQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRF---- 82 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~---------~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i---- 82 (121)
...++|||+||+..+ ++++|+.+|++||. ..++++. ++|||||+|.+.++|+.|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 347999999999998 79999999999999 5666653 479999999999999999999999999
Q ss_pred --------CCeEEEEEecC
Q 043634 83 --------LGKVLSVERAS 93 (121)
Q Consensus 83 --------~g~~l~v~~a~ 93 (121)
.|+.|.|.+|+
T Consensus 209 ~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp STTGGGGGGSCCCEEEECC
T ss_pred cccccccCCCCEEEEEEcc
Confidence 89999999993
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=6.6e-16 Score=106.96 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=67.2
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 16 TENLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
..+.++|||+|||+.+++++|+.+|+.||. ..+.+. .++|||||+|.+.++|..|+..++|..+.|+.|.|.++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 344799999999999999999999999999 556553 34799999999999999999999999999999999998
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=4.6e-16 Score=100.38 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=65.9
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|..|+.. +..++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4789999999999999999999999999 6666665 688899999999999999999974 67899999999888
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=7e-16 Score=107.94 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCCccEEEecCCCCC-CCHHHHHHHHhhhCC-ccEEEcc--C--CCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 043634 16 TENLVTLLIKHLPDA-IPQDTLSRIFSHYGA-SSVRPCS--A--GRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSV 89 (121)
Q Consensus 16 ~~~~~~l~V~nlp~~-~~~~~L~~~f~~~G~-~~~~~~~--~--~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v 89 (121)
..+.++|||+|||+. +++++|+++|++||. ..++++. . |.++|||||+|.+.++|.+|+ .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345799999999999 999999999999999 6666665 3 788999999999999999999 99999999999999
Q ss_pred EecCCCC
Q 043634 90 ERASKPN 96 (121)
Q Consensus 90 ~~a~~~~ 96 (121)
.++ .++
T Consensus 286 ~~a-~~k 291 (292)
T 2ghp_A 286 SLA-DKK 291 (292)
T ss_dssp EEC-CCC
T ss_pred EEe-cCC
Confidence 999 443
No 188
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=1.1e-15 Score=99.11 Aligned_cols=76 Identities=21% Similarity=0.413 Sum_probs=66.1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhh----CCc-----cEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHY----GAS-----SVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVL 87 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~----G~~-----~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l 87 (121)
.+.++|||+|||+.+++++|+++|++| |.. .+..+..+.++|||||+|.+.++|..|+ .+||..+.|+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 357899999999999999999999999 520 3554555667899999999999999999 899999999999
Q ss_pred EEEecC
Q 043634 88 SVERAS 93 (121)
Q Consensus 88 ~v~~a~ 93 (121)
.|.++.
T Consensus 81 ~v~~~~ 86 (172)
T 2g4b_A 81 KIRRPH 86 (172)
T ss_dssp EEECCS
T ss_pred eecCCc
Confidence 999883
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=7.7e-16 Score=99.82 Aligned_cols=75 Identities=21% Similarity=0.465 Sum_probs=66.0
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CC--CcccEEEEEeCCHHHHHHHHHHhcCCeeC---CeEEE
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AG--RLRNCVFVDFGNEPLASQAQMQLNGLRFL---GKVLS 88 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~--~~~g~afv~f~~~~~a~~ai~~l~g~~i~---g~~l~ 88 (121)
..++|||+|||+.+++++|+++|++||. ..++++. ++ .++|||||+|.+.++|..|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3689999999999999999999999999 6666665 33 78999999999999999999999998876 57778
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
+.++
T Consensus 82 ~~~~ 85 (175)
T 3nmr_A 82 MKPA 85 (175)
T ss_dssp EEEC
T ss_pred Eccc
Confidence 8777
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=2.6e-15 Score=91.16 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=66.6
Q ss_pred CCCccEEEecCCCC-----CCCHHHHHHHHhhhCC-ccEEEcc----CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 043634 16 TENLVTLLIKHLPD-----AIPQDTLSRIFSHYGA-SSVRPCS----AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGK 85 (121)
Q Consensus 16 ~~~~~~l~V~nlp~-----~~~~~~L~~~f~~~G~-~~~~~~~----~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~ 85 (121)
..+.++|+|+|+.. .-++++|+..|++||. .++.++. ++.++|+|||+|.+.++|.+|+..|||..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34578999999963 2367999999999999 6676665 257799999999999999999999999999999
Q ss_pred EEEEEec
Q 043634 86 VLSVERA 92 (121)
Q Consensus 86 ~l~v~~a 92 (121)
.|.|.++
T Consensus 85 ~i~v~~a 91 (105)
T 2pe8_A 85 VVKACFY 91 (105)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 9999999
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=1.4e-15 Score=102.29 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=65.0
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhCCc---cEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCe----EEE
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYGAS---SVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGK----VLS 88 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G~~---~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~----~l~ 88 (121)
.+.++|||+|||+.+++++|+++|++||.. +++++. .+..+|+|||+|.+.++|..|+..|||..|.|+ ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 346789999999999999999999999982 455554 445569999999999999999999999999986 577
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.63 E-value=8.2e-16 Score=101.69 Aligned_cols=75 Identities=20% Similarity=0.361 Sum_probs=65.5
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-c--------cEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-S--------SVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~--------~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
..++|||+|||+.+++++|+++|++||. . .+..+..+.++|||||+|.+.++|..|+ .|||..++|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 4789999999999999999999999943 1 2554556677899999999999999999 8999999999999
Q ss_pred EEecC
Q 043634 89 VERAS 93 (121)
Q Consensus 89 v~~a~ 93 (121)
|.++.
T Consensus 82 v~~~~ 86 (198)
T 2yh0_A 82 IRRPH 86 (198)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99883
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=2.8e-15 Score=104.50 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=69.6
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc---CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS---AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~---~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
+.++|||+|||+.+++++|+++|++||. ..++++. +|.++|||||+|.+.++|..|+..|+|..++|+.|.|.++
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4689999999999999999999999999 6666654 7888999999999999999999999999999999999999
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=3e-15 Score=99.29 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=67.3
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhC-C-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG-A-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL-GKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G-~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~-g~~l~v~~a 92 (121)
.+.++|||+|||..+++++|+++|++|| . ..++++.. .+|+|||+|.+.++|..|+..|||..++ |+.|+|.++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 4589999999999999999999999999 7 66666543 3689999999999999999999999999 999999999
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=100.95 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=66.6
Q ss_pred ccEEEecCCCC-CCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 19 LVTLLIKHLPD-AIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 19 ~~~l~V~nlp~-~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
+++|||+|||+ .+++++|+++|++||. ..++++... +|||||+|.+.++|..|+..|||..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 9999999999999999 666666532 7899999999999999999999999999999999994
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=4.3e-15 Score=101.03 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=66.6
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhhhC-C-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSHYG-A-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL-GKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~~G-~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~-g~~l~v~~a 92 (121)
.+.++|||+|||+.+++++|+++|++|| . ..++++. ..+|+|||+|.+.++|..|+..|||..++ |+.|+|.++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 3479999999999999999999999999 7 5555543 24789999999999999999999999999 999999999
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=5e-15 Score=103.59 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=67.5
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhC-C-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYG-A-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERAS 93 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G-~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a~ 93 (121)
..++|||+|||+.+++++|+++|..|| . ..+.++. .|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a- 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS- 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC-
Confidence 478999999999999999999999999 7 6676665 5678899999999999999999999999999999999998
Q ss_pred CCC
Q 043634 94 KPN 96 (121)
Q Consensus 94 ~~~ 96 (121)
.+.
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=2.9e-14 Score=98.67 Aligned_cols=76 Identities=25% Similarity=0.380 Sum_probs=67.0
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhc-CCeeC---CeEEEEE
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLN-GLRFL---GKVLSVE 90 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~-g~~i~---g~~l~v~ 90 (121)
+.++|||+|||+.+++++|+++|+.||. ..+.++. +|.++|||||+|.+.++|.+|+..|| +..+. ++.|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 4689999999999999999999999999 5666655 78889999999999999999999995 55555 8999999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
++.
T Consensus 175 ~~~ 177 (261)
T 3sde_A 175 PME 177 (261)
T ss_dssp ECC
T ss_pred ecc
Confidence 983
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=4.1e-15 Score=90.14 Aligned_cols=69 Identities=25% Similarity=0.424 Sum_probs=59.4
Q ss_pred ecCCCCCCCHHHHHHHH------------hhhCC-ccEEEcc--CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 043634 24 IKHLPDAIPQDTLSRIF------------SHYGA-SSVRPCS--AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLS 88 (121)
Q Consensus 24 V~nlp~~~~~~~L~~~f------------~~~G~-~~~~~~~--~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~ 88 (121)
+.|||+.+++++|++.| ++||. ..+.++. .+.++|||||+|.+.++|.+|+..|||..++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777887777666 99999 6777776 567899999999999999999999999999999999
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 200
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.53 E-value=7.3e-14 Score=100.35 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCCCCccEEEecC--CCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeC---Ce-
Q 043634 13 KQETENLVTLLIKH--LPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFL---GK- 85 (121)
Q Consensus 13 ~~~~~~~~~l~V~n--lp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~---g~- 85 (121)
.....|..+|||+| |++.+++++|+++|++||. ..+.+. .+||||||+|.+.++|.+|++.|||..+. |+
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~---~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC---TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44566789999999 5899999999999999999 444333 25799999999999999999999999883 45
Q ss_pred -EEEEEec
Q 043634 86 -VLSVERA 92 (121)
Q Consensus 86 -~l~v~~a 92 (121)
.|.|.++
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 5677777
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=8.7e-14 Score=84.39 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=64.3
Q ss_pred CCccEEEecCC--CCCCC--------HHHHHHHHhhhCC-ccEEEcc--C---CCcccEEEEEeCCHHHHHHHHHHhcCC
Q 043634 17 ENLVTLLIKHL--PDAIP--------QDTLSRIFSHYGA-SSVRPCS--A---GRLRNCVFVDFGNEPLASQAQMQLNGL 80 (121)
Q Consensus 17 ~~~~~l~V~nl--p~~~~--------~~~L~~~f~~~G~-~~~~~~~--~---~~~~g~afv~f~~~~~a~~ai~~l~g~ 80 (121)
.|.+.|.+.|+ |..+. +++|+..|++||. .++.++. . +.++|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45788899998 43443 3689999999999 6677765 1 356899999999999999999999999
Q ss_pred eeCCeEEEEEec
Q 043634 81 RFLGKVLSVERA 92 (121)
Q Consensus 81 ~i~g~~l~v~~a 92 (121)
.++|+.|+|.++
T Consensus 83 ~f~GR~i~v~~~ 94 (105)
T 3v4m_A 83 KFANRVVVTKYC 94 (105)
T ss_dssp EETTEECEEEEE
T ss_pred EeCCCEEEEEEe
Confidence 999999999988
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.7e-13 Score=80.50 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=57.4
Q ss_pred ccEEEecCCC-------CCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 19 LVTLLIKHLP-------DAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 19 ~~~l~V~nlp-------~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
...|-|.-.. ..+++++|+.+|++||. ..+.++ +.++|||||+|.+.++|..|+..++ .+.|+.|+|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEE
Confidence 4455555443 46899999999999999 555555 5778999999999999999998754 4689999999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
+++
T Consensus 86 ~a~ 88 (100)
T 2d9o_A 86 WLE 88 (100)
T ss_dssp CSS
T ss_pred Ecc
Confidence 993
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=9.8e-13 Score=81.31 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=63.9
Q ss_pred CccEEEecCCCC--CC---CHHHHHHHHhhhCC-ccEEEcc--C-----CCcccEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 043634 18 NLVTLLIKHLPD--AI---PQDTLSRIFSHYGA-SSVRPCS--A-----GRLRNCVFVDFGNEPLASQAQMQLNGLRFLG 84 (121)
Q Consensus 18 ~~~~l~V~nlp~--~~---~~~~L~~~f~~~G~-~~~~~~~--~-----~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g 84 (121)
+.+.|++.|+-. .+ -+++|+..|++||. .++.++. . +.++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999832 22 35899999999999 6676665 2 3567999999999999999999999999999
Q ss_pred eEEEEEec
Q 043634 85 KVLSVERA 92 (121)
Q Consensus 85 ~~l~v~~a 92 (121)
+.|+|.++
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999988
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=1.2e-11 Score=75.89 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=61.3
Q ss_pred CccEEEecCCCCCCC----------HHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 043634 18 NLVTLLIKHLPDAIP----------QDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV 86 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~----------~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~ 86 (121)
+.+.|.+.|+=..-. +++|+..|++||. .++.+... ..+|++||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 466788888733221 2589999999999 77776653 24899999999999999999999999999999
Q ss_pred EEEEec
Q 043634 87 LSVERA 92 (121)
Q Consensus 87 l~v~~a 92 (121)
|+|.++
T Consensus 85 i~v~~~ 90 (114)
T 3s6e_A 85 ITAAYV 90 (114)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 999998
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.7e-11 Score=71.05 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=58.5
Q ss_pred CCccEEEecCCCC----CCCH----HHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 043634 17 ENLVTLLIKHLPD----AIPQ----DTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVL 87 (121)
Q Consensus 17 ~~~~~l~V~nlp~----~~~~----~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l 87 (121)
+|..+|+|.-.+. ++-. .+|.+.|++||. ..++++. +.+||+|.+.++|.+|+. |||..++|+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 4577888887662 3333 679999999998 5555553 238999999999999997 99999999999
Q ss_pred EEEecCCCC
Q 043634 88 SVERASKPN 96 (121)
Q Consensus 88 ~v~~a~~~~ 96 (121)
+|..++..+
T Consensus 79 kV~lkt~dW 87 (91)
T 2dnr_A 79 TIALKSPSG 87 (91)
T ss_dssp EEEECCCSS
T ss_pred EEEeCCCCc
Confidence 999994334
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=4.2e-11 Score=74.08 Aligned_cols=78 Identities=18% Similarity=0.069 Sum_probs=64.4
Q ss_pred CCCCCCccEEEecCCCCC-CCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCC-HHHHHHHHHHhc--CCeeCCeEEE
Q 043634 13 KQETENLVTLLIKHLPDA-IPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGN-EPLASQAQMQLN--GLRFLGKVLS 88 (121)
Q Consensus 13 ~~~~~~~~~l~V~nlp~~-~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~-~~~a~~ai~~l~--g~~i~g~~l~ 88 (121)
+....+++.|||+||++. ++.++|+.+|++||. |..+.--.....|||.|.+ ..+|..|+..++ +..|.|..+.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~--V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGE--IKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCC--EEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCC--EEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 344566999999999999 999999999999999 6555511122479999999 889999999995 6889999988
Q ss_pred EEec
Q 043634 89 VERA 92 (121)
Q Consensus 89 v~~a 92 (121)
++..
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8876
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.7e-10 Score=67.12 Aligned_cols=70 Identities=17% Similarity=0.320 Sum_probs=57.4
Q ss_pred CCccEEEecCCCCC------CCH---HHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 043634 17 ENLVTLLIKHLPDA------IPQ---DTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKV 86 (121)
Q Consensus 17 ~~~~~l~V~nlp~~------~~~---~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~ 86 (121)
+|..+|+|.-++.. ..+ .+|.+.|.+||. ..++++.. -+||+|.+.++|.+||+ |+|..++|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 45788999888643 232 579999999998 66666532 39999999999999998 9999999999
Q ss_pred EEEEec
Q 043634 87 LSVERA 92 (121)
Q Consensus 87 l~v~~a 92 (121)
|+|.+.
T Consensus 87 L~V~~k 92 (95)
T 1ufw_A 87 VKISGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999876
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=2.5e-09 Score=72.14 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=54.9
Q ss_pred CCHHHHHHHHhhhCC-ccEEEcc-------CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 31 IPQDTLSRIFSHYGA-SSVRPCS-------AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 31 ~~~~~L~~~f~~~G~-~~~~~~~-------~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
-.+++|+..|++||. .++.++. ++.++|++||+|.+.++|.+|+..|||..++|+.|.+.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 345789999999999 6666654 3478899999999999999999999999999999999988
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.46 E-value=3.5e-06 Score=50.79 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=60.6
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhh-----CC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHY-----GA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVER 91 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~-----G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~ 91 (121)
..++|-+-|||..+++..++.+..++ |. ..+.+. .. -+.|+|+|.|...|-+|.-.|+|..|.|++|++.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~-pD--H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV-SD--FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE-TT--TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe-cC--CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 37889999999999999999999999 76 333332 22 36899999999999999889999999999999874
Q ss_pred c
Q 043634 92 A 92 (121)
Q Consensus 92 a 92 (121)
.
T Consensus 97 v 97 (117)
T 2l9w_A 97 I 97 (117)
T ss_dssp H
T ss_pred H
Confidence 4
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.19 E-value=1.9e-05 Score=46.53 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=47.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHh
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQL 77 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l 77 (121)
.+.+++ +.|..+...||.++|+.||...|+++.. .-|||.|.+.+.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC----CeEEEEecCHHHHHHHHHhc
Confidence 677777 9999999999999999999866777763 48999999999999988765
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.10 E-value=1.5e-05 Score=47.67 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=60.4
Q ss_pred CCccEEEecCCCCCC-CH----HHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 043634 17 ENLVTLLIKHLPDAI-PQ----DTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVE 90 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~-~~----~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~ 90 (121)
..+++|+|.||+..+ .. +.++.+|..|+. ....++.+ -....|.|.+.++|.+|-..||+..++|+.++|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 347889999998864 32 567899999998 55555543 2367899999999999999999999999999999
Q ss_pred ecC
Q 043634 91 RAS 93 (121)
Q Consensus 91 ~a~ 93 (121)
++.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 983
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.77 E-value=0.00014 Score=42.54 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=51.0
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEcc----CC-CcccEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCS----AG-RLRNCVFVDFGNEPLASQAQMQLNGLRFLG 84 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~----~~-~~~g~afv~f~~~~~a~~ai~~l~g~~i~g 84 (121)
++|-|++||+.++++++.+.++.... .....+. .+ .....|||.|.+.+++..-.+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 57899999999999999999998776 3333333 11 223689999999999999889999987653
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=0.0004 Score=41.31 Aligned_cols=72 Identities=24% Similarity=0.317 Sum_probs=55.3
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhh---hCCccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 17 ENLVTLLIKHLPDAIPQDTLSRIFSH---YGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 17 ~~~~~l~V~nlp~~~~~~~L~~~f~~---~G~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
....+|.|.|||+.+.++.|+-+|.. -|.-.+..+. .+ +-|+|+|.+...+++.+.. ..+.|++..|.|...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcC
Confidence 44889999999999999999999986 2332233333 22 6899999999999988853 356888888888654
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.73 E-value=3.2e-05 Score=45.72 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=46.4
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhc
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 78 (121)
.+.++| +.|..+...||.++|+.||...|+++.. .-|||.|.+.+.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 466777 9999999999999999999855677653 489999999999999988663
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.12 E-value=0.0037 Score=38.14 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=54.6
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCC-eEEEEEec
Q 043634 18 NLVTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLG-KVLSVERA 92 (121)
Q Consensus 18 ~~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g-~~l~v~~a 92 (121)
..+-|.|-+.|+.. .+.+...|.+||. ..... .....+-.|.|.+..+|++|+. .||..++| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 37889999999986 5668889999999 33333 1224699999999999999995 69999985 56777765
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.70 E-value=0.0018 Score=38.15 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=47.1
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEcc--CC------CcccEEEEEeCCHHHHHHHHHHhcCCeeCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCS--AG------RLRNCVFVDFGNEPLASQAQMQLNGLRFLG 84 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~--~~------~~~g~afv~f~~~~~a~~ai~~l~g~~i~g 84 (121)
+-+|-|+.||+.+|++++.+.++..-. +.+.. .| .....|||.|.+.++...=.+.++|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 678999999999999987766665433 32222 11 123578999999999988888999977643
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.84 E-value=0.0097 Score=37.34 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=26.0
Q ss_pred EEEcc-CCCcccEEEEEeCCHHHHHHHHHHhcC
Q 043634 48 VRPCS-AGRLRNCVFVDFGNEPLASQAQMQLNG 79 (121)
Q Consensus 48 ~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~g 79 (121)
++++. ....+|||||+|.+.++|++|+..+++
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcc
Confidence 34444 446789999999999999999988875
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.63 E-value=0.065 Score=33.15 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=51.6
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCC-cc-EEEcc---------------CC-CcccEEEEEeCCHHHHHHHHHHhcCC
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGA-SS-VRPCS---------------AG-RLRNCVFVDFGNEPLASQAQMQLNGL 80 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~-~~-~~~~~---------------~~-~~~g~afv~f~~~~~a~~ai~~l~g~ 80 (121)
.+.|.|=+.|+... ..+.+.|++||. .. ..... .+ ....+-.|+|.+..+|.+|+ ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 35566777766655 557788999999 32 11110 00 12468899999999999999 57999
Q ss_pred eeCCeEEEEEec
Q 043634 81 RFLGKVLSVERA 92 (121)
Q Consensus 81 ~i~g~~l~v~~a 92 (121)
.++|..|.|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999998888877
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.38 E-value=0.14 Score=38.48 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=46.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhhhCCccEEEccCCCcccEEEEEeCCHHHHHHHHHHhc
Q 043634 19 LVTLLIKHLPDAIPQDTLSRIFSHYGASSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLN 78 (121)
Q Consensus 19 ~~~l~V~nlp~~~~~~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~ 78 (121)
+..++|+ +|..+...+|.++|+.||...|+++.. ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widd----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDD----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSS----SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcC----CeEEEEECCHHHHHHHHHHHH
Confidence 5677777 889999999999999999855666543 479999999999999988874
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.31 E-value=0.0071 Score=37.77 Aligned_cols=38 Identities=16% Similarity=0.064 Sum_probs=34.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEec
Q 043634 54 GRLRNCVFVDFGNEPLASQAQMQL-NGLRFLGKVLSVERA 92 (121)
Q Consensus 54 ~~~~g~afv~f~~~~~a~~ai~~l-~g~~i~g~~l~v~~a 92 (121)
...+|+++++|.+.+.|++|+..+ ||..++| .+.+.++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a 48 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDA 48 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccc
Confidence 355799999999999999999999 9999999 9999987
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.24 E-value=0.018 Score=42.91 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=36.5
Q ss_pred cEEEecCCCCCCCHHHHHHHHhhhCC-ccEEEccCCCcccEEEEEeCCHHHHHHHHH
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSHYGA-SSVRPCSAGRLRNCVFVDFGNEPLASQAQM 75 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~~G~-~~~~~~~~~~~~g~afv~f~~~~~a~~ai~ 75 (121)
+.|+|. .|..+++.+|.++|++||. .++.+-.. ...|+.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CCeEEEEEeCCHHHHHHHHh
Confidence 789997 7999999999999999999 44443332 22699999999988876653
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=76.04 E-value=7.2 Score=20.94 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=40.4
Q ss_pred EEEec-CCCCCCCHHHHHHHHhhhCC---ccEEEccCCCcccEEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 043634 21 TLLIK-HLPDAIPQDTLSRIFSHYGA---SSVRPCSAGRLRNCVFVDFGNEPLASQAQMQLNGLRFLGKVLSVERA 92 (121)
Q Consensus 21 ~l~V~-nlp~~~~~~~L~~~f~~~G~---~~~~~~~~~~~~g~afv~f~~~~~a~~ai~~l~g~~i~g~~l~v~~a 92 (121)
++||. +--..+...+|..++..-+. ..+-.+.-. ..|.||+... ..+..++..|++..+.|+.+.|+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 34553 22334666778888875433 334333311 2488888865 4577888999999999999998876
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=75.66 E-value=8.1 Score=24.85 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=38.9
Q ss_pred ccEEEecCCCC-C--------CCHHHHHHHH--hhhCCccEEEcc-CCCcccEEEEEeCCHH-HHHHHH
Q 043634 19 LVTLLIKHLPD-A--------IPQDTLSRIF--SHYGASSVRPCS-AGRLRNCVFVDFGNEP-LASQAQ 74 (121)
Q Consensus 19 ~~~l~V~nlp~-~--------~~~~~L~~~f--~~~G~~~~~~~~-~~~~~g~afv~f~~~~-~a~~ai 74 (121)
+.++.|-|+|. . .+..+|.+.| ..|....++.+. ...+.|++.|.|..-- -...|+
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 56677888887 2 4447899977 889886666666 4446789999999543 344444
No 224
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=36.79 E-value=6 Score=24.66 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=16.6
Q ss_pred HHHHHHHhhhCCccEEEccCCCcccEEEEEeC
Q 043634 34 DTLSRIFSHYGASSVRPCSAGRLRNCVFVDFG 65 (121)
Q Consensus 34 ~~L~~~f~~~G~~~~~~~~~~~~~g~afv~f~ 65 (121)
+|+.++|...|. |++... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~--Vkwfn~--~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGI--CKWFNV--RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEE--EEEEET--TTTEEEEEEE
T ss_pred CcccccccceeE--EEEEEC--CCCeeEEeeC
Confidence 345566666676 666653 3689999865
No 225
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=30.48 E-value=51 Score=18.29 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=18.4
Q ss_pred cCCCCCCCHHHHHHHHhhhCC
Q 043634 25 KHLPDAIPQDTLSRIFSHYGA 45 (121)
Q Consensus 25 ~nlp~~~~~~~L~~~f~~~G~ 45 (121)
|.|+..+++++|+.++.+...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~~ 70 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVAG 70 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHSC
T ss_pred CCCCCCcCHHHHHHHHHHHcc
Confidence 678889999999999998755
No 226
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=24.35 E-value=1.7e+02 Score=19.97 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=29.0
Q ss_pred HHHHHhhhCCccEEEcc-CCCcccEEEEEeCCHHHHHHHHHHhc
Q 043634 36 LSRIFSHYGASSVRPCS-AGRLRNCVFVDFGNEPLASQAQMQLN 78 (121)
Q Consensus 36 L~~~f~~~G~~~~~~~~-~~~~~g~afv~f~~~~~a~~ai~~l~ 78 (121)
+++.|..+|. ..+.. .|...|+-|+-+-+.+.+...++.+-
T Consensus 47 ~~~~~~~~~~--~~~~~~~ga~gg~~~~~~~~~~~a~~~~~~l~ 88 (291)
T 1o57_A 47 IKQTFEQQGI--GTLLTVPGAAGGVKYIPKMKQAEAEEFVQTLG 88 (291)
T ss_dssp HHHHHHHTTS--EEEEEECSTTCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--ceEEEecCCCCceEEcccCCHHHHHHHHHHHH
Confidence 4577888877 33333 67777888999988888887766553
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=23.80 E-value=64 Score=18.03 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=20.0
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcC
Q 043634 55 RLRNCVFVDFGNEPLASQAQMQLNG 79 (121)
Q Consensus 55 ~~~g~afv~f~~~~~a~~ai~~l~g 79 (121)
..+||.||++....+...++....|
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred ccCCEEEEEEecchhHHHHHHCCCC
Confidence 4689999999988887777766655
No 228
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=23.23 E-value=62 Score=17.98 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=17.3
Q ss_pred cCCCCCCCHHHHHHHHhhhC
Q 043634 25 KHLPDAIPQDTLSRIFSHYG 44 (121)
Q Consensus 25 ~nlp~~~~~~~L~~~f~~~G 44 (121)
|.|+..+++++|+.++.+..
T Consensus 48 Gqi~~ki~e~~L~~lL~~i~ 67 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGIA 67 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHh
Confidence 67888999999999998864
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.27 E-value=77 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.4
Q ss_pred cEEEecCCCCCCCHHHHHHHHhh
Q 043634 20 VTLLIKHLPDAIPQDTLSRIFSH 42 (121)
Q Consensus 20 ~~l~V~nlp~~~~~~~L~~~f~~ 42 (121)
..+.|+|||+.++..-|..++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH
T ss_pred ccEEEecCcccccHHHHHHHhcC
Confidence 45789999999999999999977
Done!