Query 043635
Match_columns 560
No_of_seqs 210 out of 340
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10536 PMD: Plant mobile dom 100.0 2.6E-59 5.7E-64 491.1 9.6 275 98-388 1-363 (363)
2 PF06698 DUF1192: Protein of u 92.4 0.1 2.2E-06 42.3 2.5 31 525-555 16-46 (59)
3 COG5509 Uncharacterized small 90.1 0.24 5.1E-06 40.2 2.4 31 527-557 22-52 (65)
4 TIGR01837 PHA_granule_1 poly(h 64.8 6.3 0.00014 36.0 3.1 26 527-552 93-118 (118)
5 PF09331 DUF1985: Domain of un 57.0 16 0.00035 34.2 4.4 62 138-200 65-134 (142)
6 PHA01819 hypothetical protein 55.1 18 0.00039 32.3 4.1 56 482-553 38-93 (129)
7 PF05597 Phasin: Poly(hydroxya 44.5 21 0.00046 33.4 3.0 26 528-553 107-132 (132)
8 PF09032 Siah-Interact_N: Siah 41.2 22 0.00047 30.7 2.3 27 533-559 29-55 (79)
9 PF05377 FlaC_arch: Flagella a 36.6 32 0.00069 27.8 2.5 21 532-552 2-22 (55)
10 COG3132 Uncharacterized protei 31.0 39 0.00084 33.5 2.5 22 531-552 186-207 (215)
11 PRK04406 hypothetical protein; 30.2 48 0.001 28.1 2.7 16 532-547 6-21 (75)
12 COG3937 Uncharacterized conser 29.1 52 0.0011 30.0 2.9 23 530-552 83-105 (108)
13 PF06698 DUF1192: Protein of u 27.9 56 0.0012 26.7 2.6 25 529-553 27-51 (59)
14 PRK02119 hypothetical protein; 22.1 77 0.0017 26.7 2.5 15 533-547 5-19 (73)
15 PRK11239 hypothetical protein; 21.4 74 0.0016 32.3 2.6 20 533-552 186-205 (215)
16 PF01166 TSC22: TSC-22/dip/bun 20.3 93 0.002 25.5 2.4 28 525-552 16-43 (59)
No 1
>PF10536 PMD: Plant mobile domain; InterPro: IPR019557 This entry represents a domain found in a variety of transposases [].
Probab=100.00 E-value=2.6e-59 Score=491.11 Aligned_cols=275 Identities=36% Similarity=0.551 Sum_probs=228.5
Q ss_pred hcchhHHHHhhccccccChhHHHHHHhhhcccccceeeccccchhhHHHH-HHhc-------------------------
Q 043635 98 KAGIHEAILNSTNEIRINYDLILGLAKKWCPETKSFIFSWGEATITLEDM-MIAG------------------------- 151 (560)
Q Consensus 98 ~~GI~~ai~~s~~~~~~d~~Li~Al~erW~peTnTF~fp~GEmTiTL~DV-mIlG------------------------- 151 (560)
++||+.+|.+| ++.+|++||.||+|||+|||||||||+|||||||+|| +|+|
T Consensus 1 ~~g~~~~i~~s--~~~~~~~li~al~erW~~et~tF~~~~gEmtiTL~DV~~llGLpi~G~pv~~~~~~~~~~~~~~ll~ 78 (363)
T PF10536_consen 1 GFGILDAIMAS--RITIDRSLISALVERWDPETNTFHFPWGEMTITLEDVAMLLGLPIDGRPVTGPLPPDWRDLCEELLG 78 (363)
T ss_pred CchhHhhhhhh--cCCCCHHHHHHHHHHhCcccCeeecccccccchhhhhhhccccccccccccCccccchhhHHHHHhc
Confidence 47999999998 9999999999999999999999999999999999999 5777
Q ss_pred -------------------------Cc---eehhHHHHHHhhhcccccCC-CCccccchHHHHHHhhhcccccchHHHHH
Q 043635 152 -------------------------GS---EIEHEAFLSLWLSRFVFPNS-NSVISRSVFPIAVKLARGTRIAHVPAVLA 202 (560)
Q Consensus 152 -------------------------G~---e~eh~AFLl~WL~~fvFp~~-~~~i~~~~~~~A~~L~~g~~~alG~avLA 202 (560)
+. +.+|+|||++||++||||++ ++.|+..++++|++|+.+++|+||+|+||
T Consensus 79 ~~~~~~~~~~~~~~~~wl~~~~~~~~~~d~~~~~rAFll~~lg~~lfp~~~~~~v~~~~l~~~~~l~~~~~~~wg~a~La 158 (363)
T PF10536_consen 79 VSPQIKSKKGSSIRLSWLEEFFSNRPEDDEEQYHRAFLLYWLGSFLFPDKSGDYVSPRYLPLAVDLARIKRYAWGSAVLA 158 (363)
T ss_pred ccccccccccccchhhheeccccccccchHHHHHHHHHHHhhhceeccCCCcceeeeeEEeeeeccccccccccHHHHHH
Confidence 01 25799999999999999999 55999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccccccccchhHHHHHHHHhhcccCC------CCccccCCCCccccccccccc
Q 043635 203 GIYIDLSFLKEKIVALSLVDSWEDENRKLEITIWSPFQLVQIWARERFKDLRP------EPSLIMRGEPRFAQWHKLMMG 276 (560)
Q Consensus 203 ~LYr~L~~as~ki~~~s~~~~~~~~~~~~~~~~~gp~~LLQ~W~~Erf~~lrP------~p~~~~~g~Pr~~rW~~~~~~ 276 (560)
+||++|++++.+.+ ....++||++|||+|+||||+.++| .|+..+.++|++++|++.+..
T Consensus 159 ~ly~~L~~~~~~~~--------------~~~~~~g~~~llq~W~werf~~~rP~~~~~~~~~~~~~~~P~~~rW~~~~~~ 224 (363)
T PF10536_consen 159 YLYRDLCKASRKSA--------------SQSNIGGPLWLLQLWAWERFPVGRPKLITAQKPNPIPDRPPRAARWCDRKST 224 (363)
T ss_pred HHHHHHHHHhhhcc--------------cccccccceeeeccchhheeecccccccccccccccccCCCeeeeeeccccc
Confidence 99999999987643 1468999999999999999999999 566778999999999987633
Q ss_pred cccceecccccc--------ccceeEEcCCCCchh--h-----hhhhhcccccccccceeeeEeCchHHhhhhCCCCCCC
Q 043635 277 DENVRMVPMFYG--------EKEMRVLVDGDLPEE--L-----QSWGQCLRVSELLGLDHVEQYFPHRITRQFGMDQDLP 341 (560)
Q Consensus 277 ~en~r~~~~fY~--------d~~~Wv~~d~~~~~e--l-----~sf~~cir~~~LVG~~~vE~Y~P~RVaRQFGm~Q~iP 341 (560)
..+......+|+ +...|.||......+ + .....+.+.|+||||++||+|+||||||||||+|+||
T Consensus 225 ~~~~~~~~~~~r~~lD~l~~~~v~W~PY~~~~~~~~~l~~~~~~~~~~~~~~~~Lv~~~~vE~y~P~Rv~RQFG~~Q~iP 304 (363)
T PF10536_consen 225 TSTSARDYEFYRNELDSLTPDQVEWRPYTDDEENEDFLPDECEEDESFWRSRCPLVGFDIVEWYLPHRVARQFGLDQDIP 304 (363)
T ss_pred ccccccchHHHHHhhhhcccceeeeecCcchhhhhcccchhhcchhhhhhhcCcccccceeeeeeeeehhhccccCCCCC
Confidence 222221122333 456799987644333 1 1234555899999999999999999999999999999
Q ss_pred CCCCCC-----CC--CcchhhhhhhccccceeeecCCCCCCCCcc-----HHHHHHhhh
Q 043635 342 ACVAPA-----NE--SPKSACSSFCKLVTYAKLYIPSRHYEAGRT-----TRYLKRWKK 388 (560)
Q Consensus 342 g~v~r~-----~~--~~~~aW~~y~~~~~~~~l~IPs~~~~~~vT-----~~Y~~Ww~~ 388 (560)
+++.+. +. ....+|.+|.....+.....|++.....++ .+|++||++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~W~~~ 363 (363)
T PF10536_consen 305 PPDPRSLLHNIDRRKKRGRAWKDWSRRHQRYIEEWPSRLEHIVVTPHDESDEYMRWWRR 363 (363)
T ss_pred CCCCccceeeecccccccchHHHHHHHHHHHHhhhcccccCccccCCcCcchHhHhhCC
Confidence 875432 22 234789999998888888888887777777 999999985
No 2
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=92.43 E-value=0.1 Score=42.32 Aligned_cols=31 Identities=39% Similarity=0.393 Sum_probs=27.3
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHhccccc
Q 043635 525 CDMSKRQILHLEEWISRLEAVVAKLKAGKFH 555 (560)
Q Consensus 525 ~~~~~~~~~~le~~i~~le~~i~~lk~~~~~ 555 (560)
.|++-.++.||++||..||.+|++++++.-.
T Consensus 16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 16 EDLSLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999987543
No 3
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=90.09 E-value=0.24 Score=40.24 Aligned_cols=31 Identities=35% Similarity=0.365 Sum_probs=26.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhccccccc
Q 043635 527 MSKRQILHLEEWISRLEAVVAKLKAGKFHYK 557 (560)
Q Consensus 527 ~~~~~~~~le~~i~~le~~i~~lk~~~~~~~ 557 (560)
.+-.++.|||+||..|...|++|||++...|
T Consensus 22 LsllsV~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 22 LSLLSVAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456889999999999999999999876544
No 4
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=64.81 E-value=6.3 Score=36.04 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhcc
Q 043635 527 MSKRQILHLEEWISRLEAVVAKLKAG 552 (560)
Q Consensus 527 ~~~~~~~~le~~i~~le~~i~~lk~~ 552 (560)
+++.++..|+.||..||..|.+|+.|
T Consensus 93 ~tk~ev~~L~~RI~~Le~~l~~l~~~ 118 (118)
T TIGR01837 93 PSREEIEALSAKIEQLAVQVEELRRA 118 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34679999999999999999999864
No 5
>PF09331 DUF1985: Domain of unknown function (DUF1985); InterPro: IPR015410 This domain is functionally uncharacterised; it is found in a set of Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.
Probab=56.98 E-value=16 Score=34.23 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=45.7
Q ss_pred ccchhhHHHHH-Hh-c-----CceehhHHHHHHhhhcccccCC-CCccccchHHHHHHhhhcccccchHHH
Q 043635 138 GEATITLEDMM-IA-G-----GSEIEHEAFLSLWLSRFVFPNS-NSVISRSVFPIAVKLARGTRIAHVPAV 200 (560)
Q Consensus 138 GEmTiTL~DVm-Il-G-----G~e~eh~AFLl~WL~~fvFp~~-~~~i~~~~~~~A~~L~~g~~~alG~av 200 (560)
.+-++|+.||. +| . +..+-..|+ ++.++..+.+.+ ...|+..++.++.+|+.-..||||...
T Consensus 65 ~~~~vtv~dv~~~L~~~~~~~~~~Rlrla~-L~~v~gvl~~~~~~~~i~~~~~~~v~Dl~~f~~yPWGr~s 134 (142)
T PF09331_consen 65 REEDVTVEDVIAKLKKMKKWDSEDRLRLAL-LLFVDGVLIATSKTTKIPKEHLKMVDDLEKFLNYPWGRYS 134 (142)
T ss_pred ccccCcHHHHHHHHhhcccCChhhHHHHHH-HHhhheeeeccCCCCCCCHHHHHHHhhHHHHhcCCcHHHH
Confidence 35679999993 33 2 133333444 456676777666 888999999999999999999999874
No 6
>PHA01819 hypothetical protein
Probab=55.13 E-value=18 Score=32.32 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=39.9
Q ss_pred ccccccCCcchhhccccCCCCCCCCCcccccccCCCCCcccccccccchhhhhHHHHHHHHHHHHHHHhccc
Q 043635 482 KNVPVNVGSEMAVEDSTDGKAGNPSHDMVRIQNGEGGGSKCDCCDMSKRQILHLEEWISRLEAVVAKLKAGK 553 (560)
Q Consensus 482 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~le~~i~~lk~~~ 553 (560)
+.+|.-+.-....|..|++|.+....| . |.+|.+-..||.||.-||..|.-.-...
T Consensus 38 tee~tedktvetieeen~nklept~td---------e-------dsskfdpvvleqri~sleqq~ttflssq 93 (129)
T PHA01819 38 TEESTEDKTVETIEEENENKLEPTTTD---------E-------DSSKFDPVVLEQRIASLEQQVTTFLSSQ 93 (129)
T ss_pred ccCCcccchhhHHHHhccccCCCcccc---------c-------cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777778888889998655422 1 2234466789999999999987654433
No 7
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=44.51 E-value=21 Score=33.45 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhccc
Q 043635 528 SKRQILHLEEWISRLEAVVAKLKAGK 553 (560)
Q Consensus 528 ~~~~~~~le~~i~~le~~i~~lk~~~ 553 (560)
++.++.+|++||+.|++.|.+|..+|
T Consensus 107 s~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 107 SRKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 36799999999999999999998764
No 8
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=41.20 E-value=22 Score=30.67 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHhcccccccCC
Q 043635 533 LHLEEWISRLEAVVAKLKAGKFHYKSQ 559 (560)
Q Consensus 533 ~~le~~i~~le~~i~~lk~~~~~~~~~ 559 (560)
.-|-+.|.+||+.|++|+.++..++.|
T Consensus 29 ~~L~~ei~klE~eI~~~~~~~~a~~~q 55 (79)
T PF09032_consen 29 DLLTNEIRKLETEIKKLKEAKAAQEEQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHCHH-H--SSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 345678999999999999988877665
No 9
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.62 E-value=32 Score=27.75 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcc
Q 043635 532 ILHLEEWISRLEAVVAKLKAG 552 (560)
Q Consensus 532 ~~~le~~i~~le~~i~~lk~~ 552 (560)
+.+||+.+.+|+..|.-+|+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~e 22 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKE 22 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999988864
No 10
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.98 E-value=39 Score=33.52 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhcc
Q 043635 531 QILHLEEWISRLEAVVAKLKAG 552 (560)
Q Consensus 531 ~~~~le~~i~~le~~i~~lk~~ 552 (560)
.-..||+||.-||..++.||+-
T Consensus 186 ~s~dlearv~aLe~eva~L~~r 207 (215)
T COG3132 186 ASSDLEARVEALEQEVAELRAR 207 (215)
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 4556999999999999999873
No 11
>PRK04406 hypothetical protein; Provisional
Probab=30.21 E-value=48 Score=28.14 Aligned_cols=16 Identities=50% Similarity=0.572 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHHH
Q 043635 532 ILHLEEWISRLEAVVA 547 (560)
Q Consensus 532 ~~~le~~i~~le~~i~ 547 (560)
+..+|+||..||..|+
T Consensus 6 ~~~le~Ri~~LE~~lA 21 (75)
T PRK04406 6 IEQLEERINDLECQLA 21 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666665554
No 12
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=29.10 E-value=52 Score=29.95 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcc
Q 043635 530 RQILHLEEWISRLEAVVAKLKAG 552 (560)
Q Consensus 530 ~~~~~le~~i~~le~~i~~lk~~ 552 (560)
.+..+|..||.+||+.|++|+..
T Consensus 83 ~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 83 SEMDELTERVDALERQVADLENK 105 (108)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999864
No 13
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.94 E-value=56 Score=26.69 Aligned_cols=25 Identities=44% Similarity=0.526 Sum_probs=20.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHhccc
Q 043635 529 KRQILHLEEWISRLEAVVAKLKAGK 553 (560)
Q Consensus 529 ~~~~~~le~~i~~le~~i~~lk~~~ 553 (560)
..-|..||+.|.|+|+.|++=+|.|
T Consensus 27 ~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 27 EERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999876654
No 14
>PRK02119 hypothetical protein; Provisional
Probab=22.05 E-value=77 Score=26.71 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHH
Q 043635 533 LHLEEWISRLEAVVA 547 (560)
Q Consensus 533 ~~le~~i~~le~~i~ 547 (560)
..+|+||.+||..++
T Consensus 5 ~~~e~Ri~~LE~rla 19 (73)
T PRK02119 5 QNLENRIAELEMKIA 19 (73)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666655544
No 15
>PRK11239 hypothetical protein; Provisional
Probab=21.40 E-value=74 Score=32.30 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHhcc
Q 043635 533 LHLEEWISRLEAVVAKLKAG 552 (560)
Q Consensus 533 ~~le~~i~~le~~i~~lk~~ 552 (560)
..||+||..||..|+.||+.
T Consensus 186 ~~Le~rv~~Le~eva~L~~~ 205 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQR 205 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55888999999998888864
No 16
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.30 E-value=93 Score=25.48 Aligned_cols=28 Identities=39% Similarity=0.367 Sum_probs=23.9
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHhcc
Q 043635 525 CDMSKRQILHLEEWISRLEAVVAKLKAG 552 (560)
Q Consensus 525 ~~~~~~~~~~le~~i~~le~~i~~lk~~ 552 (560)
+|.-|..|.+|+.|++.||..=.-||.-
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566789999999999999999988863
Done!