Query 043635
Match_columns 560
No_of_seqs 210 out of 340
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2er8_A Regulatory protein Leu3 58.3 4.2 0.00015 31.8 1.8 23 530-552 49-71 (72)
2 3ra3_A P1C; coiled coil domain 48.3 15 0.00053 24.0 2.9 20 531-550 8-27 (28)
3 1zme_C Proline utilization tra 46.6 13 0.00043 28.7 2.9 21 531-551 45-65 (70)
4 2pnv_A Small conductance calci 40.5 18 0.00063 26.6 2.7 20 532-551 18-37 (43)
5 1hwt_C Protein (heme activator 35.5 9.7 0.00033 30.3 0.5 21 531-551 59-79 (81)
6 1pyi_A Protein (pyrimidine pat 28.7 32 0.0011 28.1 2.6 23 530-552 48-70 (96)
7 3coq_A Regulatory protein GAL4 27.3 38 0.0013 27.1 2.9 21 531-551 46-66 (89)
8 1dip_A Delta-sleep-inducing pe 24.9 41 0.0014 27.5 2.5 27 525-551 17-43 (78)
9 1t3j_A Mitofusin 1; coiled coi 24.4 48 0.0017 28.4 3.0 21 531-551 55-75 (96)
10 3nmd_A CGMP dependent protein 20.9 65 0.0022 26.2 2.9 22 531-552 41-62 (72)
11 3efg_A Protein SLYX homolog; x 20.8 51 0.0017 27.0 2.4 15 533-547 10-24 (78)
12 2dtc_A RAL guanine nucleotide 20.6 45 0.0015 29.6 2.1 36 510-549 79-114 (126)
13 4dac_A Computationally designe 20.0 78 0.0027 20.7 2.6 16 535-550 6-21 (28)
No 1
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=58.26 E-value=4.2 Score=31.84 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcc
Q 043635 530 RQILHLEEWISRLEAVVAKLKAG 552 (560)
Q Consensus 530 ~~~~~le~~i~~le~~i~~lk~~ 552 (560)
.-+.+||++|..||..|+.|.++
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~~ 71 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTSD 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 36788999999999999998876
No 2
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.33 E-value=15 Score=23.97 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHHHHh
Q 043635 531 QILHLEEWISRLEAVVAKLK 550 (560)
Q Consensus 531 ~~~~le~~i~~le~~i~~lk 550 (560)
.-..||+.|.-|...|+.||
T Consensus 8 endaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 33446677777777777766
No 3
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=46.62 E-value=13 Score=28.74 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhc
Q 043635 531 QILHLEEWISRLEAVVAKLKA 551 (560)
Q Consensus 531 ~~~~le~~i~~le~~i~~lk~ 551 (560)
.+..||.||..||..|+.|++
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999976
No 4
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=40.55 E-value=18 Score=26.60 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHhc
Q 043635 532 ILHLEEWISRLEAVVAKLKA 551 (560)
Q Consensus 532 ~~~le~~i~~le~~i~~lk~ 551 (560)
-.+||.||..||.+++-|-+
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999887753
No 5
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=35.48 E-value=9.7 Score=30.31 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhc
Q 043635 531 QILHLEEWISRLEAVVAKLKA 551 (560)
Q Consensus 531 ~~~~le~~i~~le~~i~~lk~ 551 (560)
.+..||+||..||..|..|+.
T Consensus 59 ~~~~L~~ri~~LE~~l~~l~~ 79 (81)
T 1hwt_C 59 ELKKLRERVKSLEKTLSKVHS 79 (81)
T ss_dssp HHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 577899999999999988864
No 6
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=28.73 E-value=32 Score=28.13 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=19.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcc
Q 043635 530 RQILHLEEWISRLEAVVAKLKAG 552 (560)
Q Consensus 530 ~~~~~le~~i~~le~~i~~lk~~ 552 (560)
..+..||+||..||..+.+|...
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~~ 70 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGVD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 35778999999999999998753
No 7
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.35 E-value=38 Score=27.07 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhc
Q 043635 531 QILHLEEWISRLEAVVAKLKA 551 (560)
Q Consensus 531 ~~~~le~~i~~le~~i~~lk~ 551 (560)
.+..||+||..||..++.|..
T Consensus 46 ~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 46 HLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 577899999999999999853
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=24.93 E-value=41 Score=27.53 Aligned_cols=27 Identities=37% Similarity=0.297 Sum_probs=23.9
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHhc
Q 043635 525 CDMSKRQILHLEEWISRLEAVVAKLKA 551 (560)
Q Consensus 525 ~~~~~~~~~~le~~i~~le~~i~~lk~ 551 (560)
+|.-|..|.|||.|+++||..=.-||.
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556688999999999999999988886
No 9
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.40 E-value=48 Score=28.38 Aligned_cols=21 Identities=29% Similarity=0.318 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhc
Q 043635 531 QILHLEEWISRLEAVVAKLKA 551 (560)
Q Consensus 531 ~~~~le~~i~~le~~i~~lk~ 551 (560)
.|..||.+|++||.++.++|.
T Consensus 55 EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 55 EIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 566677777777777766654
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.92 E-value=65 Score=26.24 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhcc
Q 043635 531 QILHLEEWISRLEAVVAKLKAG 552 (560)
Q Consensus 531 ~~~~le~~i~~le~~i~~lk~~ 552 (560)
-|.+||.+|...|..|++|+..
T Consensus 41 ~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888764
No 11
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.83 E-value=51 Score=26.98 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHH
Q 043635 533 LHLEEWISRLEAVVA 547 (560)
Q Consensus 533 ~~le~~i~~le~~i~ 547 (560)
.+||+||..||..+|
T Consensus 10 ~~le~Ri~~LE~klA 24 (78)
T 3efg_A 10 QELEARLVELETRLS 24 (78)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556665555544
No 12
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=20.57 E-value=45 Score=29.57 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=29.8
Q ss_pred cccccCCCCCcccccccccchhhhhHHHHHHHHHHHHHHH
Q 043635 510 VRIQNGEGGGSKCDCCDMSKRQILHLEEWISRLEAVVAKL 549 (560)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~i~~le~~i~~l 549 (560)
..|.+.+.|+.+.|++ -...++|.||..|...|...
T Consensus 79 F~L~~~~~G~~Y~fqA----~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 79 FQLNNPDKGNVYKFQT----GSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp EEEECTTSCSEEEEEC----SSHHHHHHHHHHHHHHHTSC
T ss_pred EEEeeCCCCCEEEEeC----CCHHHHHHHHHHHHHHHhcC
Confidence 3777777899999999 46689999999999988644
No 13
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=20.01 E-value=78 Score=20.69 Aligned_cols=16 Identities=44% Similarity=0.596 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 043635 535 LEEWISRLEAVVAKLK 550 (560)
Q Consensus 535 le~~i~~le~~i~~lk 550 (560)
|++-+.|||+.+-||.
T Consensus 6 ldanvkrlekevgkle 21 (28)
T 4dac_A 6 LDANVKRLEKEVGKLE 21 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhhhh
Confidence 4555566666666554
Done!